Query 001392
Match_columns 1088
No_of_seqs 1399 out of 5247
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 23:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2002 TPR-containing nuclear 100.0 2E-120 3E-125 1019.0 97.9 1000 1-1054 3-1017(1018)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-51 3E-56 531.8 86.5 699 32-798 151-885 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-50 2.6E-55 523.1 90.7 735 21-833 37-800 (899)
4 KOG2002 TPR-containing nuclear 100.0 2E-45 4.4E-50 414.3 73.0 582 110-763 146-763 (1018)
5 PRK11447 cellulose synthase su 100.0 3.6E-42 7.8E-47 442.8 76.0 652 37-778 25-739 (1157)
6 PRK11447 cellulose synthase su 100.0 5.3E-42 1.2E-46 441.3 76.4 622 83-785 28-706 (1157)
7 KOG4626 O-linked N-acetylgluco 100.0 9.3E-44 2E-48 379.3 35.9 447 107-611 61-508 (966)
8 KOG4626 O-linked N-acetylgluco 100.0 3.1E-43 6.8E-48 375.3 38.8 462 125-730 45-506 (966)
9 PRK09782 bacteriophage N4 rece 100.0 9.3E-37 2E-41 372.8 71.0 663 40-796 44-723 (987)
10 PRK09782 bacteriophage N4 rece 100.0 1.7E-34 3.6E-39 353.1 66.3 650 25-793 63-753 (987)
11 PLN03077 Protein ECB2; Provisi 100.0 5.9E-32 1.3E-36 340.8 70.7 671 35-835 46-723 (857)
12 TIGR00990 3a0801s09 mitochondr 100.0 4.3E-31 9.3E-36 320.2 55.6 436 129-625 128-574 (615)
13 PLN03077 Protein ECB2; Provisi 100.0 5.6E-30 1.2E-34 322.9 64.5 641 25-779 69-720 (857)
14 TIGR00990 3a0801s09 mitochondr 100.0 7.5E-31 1.6E-35 318.0 54.0 444 85-594 129-577 (615)
15 KOG2076 RNA polymerase III tra 100.0 4.6E-28 9.9E-33 273.2 60.4 670 40-776 139-892 (895)
16 KOG0495 HAT repeat protein [RN 100.0 2.3E-26 4.9E-31 248.6 66.9 598 107-790 264-891 (913)
17 KOG2076 RNA polymerase III tra 100.0 3.1E-27 6.7E-32 266.6 60.4 651 108-799 153-881 (895)
18 KOG0495 HAT repeat protein [RN 100.0 2.8E-24 6.2E-29 232.5 61.1 597 34-744 279-881 (913)
19 PRK10049 pgaA outer membrane p 100.0 1.3E-26 2.8E-31 285.6 49.3 435 114-597 2-465 (765)
20 PRK15174 Vi polysaccharide exp 100.0 1.5E-25 3.3E-30 270.1 47.2 325 107-442 55-385 (656)
21 PRK15174 Vi polysaccharide exp 100.0 2.1E-25 4.6E-30 268.8 48.4 336 126-476 40-380 (656)
22 PRK10049 pgaA outer membrane p 100.0 3.3E-25 7.1E-30 273.3 48.9 397 110-562 31-464 (765)
23 PLN03218 maturation of RBCL 1; 100.0 8.6E-23 1.9E-27 252.2 66.5 546 145-779 354-909 (1060)
24 KOG0547 Translocase of outer m 100.0 6.1E-25 1.3E-29 230.9 39.4 429 163-705 116-567 (606)
25 PLN03218 maturation of RBCL 1; 100.0 1.9E-22 4E-27 249.3 65.1 546 112-744 355-910 (1060)
26 KOG0547 Translocase of outer m 99.9 7.9E-25 1.7E-29 230.0 36.6 427 129-623 116-567 (606)
27 PLN03081 pentatricopeptide (PP 99.9 2.2E-23 4.8E-28 256.7 50.1 466 270-834 89-559 (697)
28 KOG1127 TPR repeat-containing 99.9 3.1E-22 6.7E-27 226.5 54.3 656 42-796 401-1121(1238)
29 PLN03081 pentatricopeptide (PP 99.9 4.8E-23 1E-27 253.8 50.5 463 130-705 89-558 (697)
30 PRK14574 hmsH outer membrane p 99.9 1.6E-22 3.5E-27 243.2 53.3 468 122-627 28-518 (822)
31 KOG1127 TPR repeat-containing 99.9 5.3E-22 1.1E-26 224.6 52.9 598 131-790 565-1234(1238)
32 KOG2003 TPR repeat-containing 99.9 2.1E-23 4.5E-28 216.1 37.1 457 108-634 215-700 (840)
33 PRK14574 hmsH outer membrane p 99.9 2.7E-22 5.8E-27 241.2 51.4 442 106-596 46-521 (822)
34 KOG2003 TPR repeat-containing 99.9 9.4E-24 2E-28 218.6 32.6 478 129-689 202-708 (840)
35 KOG1173 Anaphase-promoting com 99.9 1.8E-22 4E-27 216.9 41.4 509 165-796 19-535 (611)
36 KOG1173 Anaphase-promoting com 99.9 1.8E-22 4E-27 216.9 39.6 447 107-602 29-532 (611)
37 KOG1155 Anaphase-promoting com 99.9 1.1E-20 2.4E-25 198.0 42.4 364 196-622 163-536 (559)
38 KOG1155 Anaphase-promoting com 99.9 5.3E-20 1.1E-24 193.0 47.3 446 41-557 79-539 (559)
39 KOG1126 DNA-binding cell divis 99.9 2.3E-22 5E-27 221.2 29.1 312 81-411 315-626 (638)
40 KOG0548 Molecular co-chaperone 99.9 2.2E-21 4.8E-26 208.3 35.5 252 307-618 226-485 (539)
41 KOG1156 N-terminal acetyltrans 99.9 2.2E-18 4.8E-23 188.5 57.1 449 128-623 7-469 (700)
42 KOG4162 Predicted calmodulin-b 99.9 2.7E-18 5.9E-23 191.5 57.9 387 340-789 321-793 (799)
43 KOG1156 N-terminal acetyltrans 99.9 1.4E-19 3.1E-24 197.7 46.7 486 271-833 10-569 (700)
44 KOG1126 DNA-binding cell divis 99.9 1.5E-21 3.2E-26 214.9 27.3 204 521-743 417-620 (638)
45 PRK11788 tetratricopeptide rep 99.9 3.3E-20 7.2E-25 214.0 39.6 301 128-438 35-347 (389)
46 KOG1915 Cell cycle control pro 99.9 2.1E-18 4.5E-23 180.9 47.2 499 115-669 60-584 (677)
47 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 217.8 32.5 272 344-706 37-313 (389)
48 KOG0624 dsRNA-activated protei 99.9 1.1E-19 2.5E-24 182.9 34.4 344 124-598 34-380 (504)
49 KOG0624 dsRNA-activated protei 99.9 4.7E-20 1E-24 185.6 30.7 332 38-418 36-383 (504)
50 KOG0548 Molecular co-chaperone 99.9 1E-19 2.2E-24 195.7 35.1 471 131-700 5-485 (539)
51 KOG4162 Predicted calmodulin-b 99.9 2.8E-18 6.1E-23 191.4 44.1 433 126-626 321-787 (799)
52 KOG1915 Cell cycle control pro 99.9 1.3E-16 2.7E-21 167.7 52.4 474 148-683 59-548 (677)
53 KOG1174 Anaphase-promoting com 99.9 1.6E-17 3.5E-22 171.6 40.0 313 312-688 203-518 (564)
54 KOG1174 Anaphase-promoting com 99.8 2.4E-17 5.3E-22 170.3 36.7 416 301-792 93-513 (564)
55 KOG3785 Uncharacterized conser 99.8 1.9E-16 4.1E-21 160.4 38.5 452 172-783 32-494 (557)
56 PF13429 TPR_15: Tetratricopep 99.8 1.8E-19 4E-24 196.4 14.0 265 452-779 12-277 (280)
57 KOG1129 TPR repeat-containing 99.8 2E-17 4.3E-22 165.9 26.3 418 132-605 8-475 (478)
58 TIGR00540 hemY_coli hemY prote 99.8 2.2E-16 4.8E-21 181.1 38.1 303 131-440 87-401 (409)
59 PF13429 TPR_15: Tetratricopep 99.8 8.3E-19 1.8E-23 191.3 13.4 263 166-438 12-277 (280)
60 PRK12370 invasion protein regu 99.8 1.1E-16 2.5E-21 190.4 32.2 251 143-405 276-535 (553)
61 KOG1129 TPR repeat-containing 99.8 2.3E-17 4.9E-22 165.4 20.6 275 136-418 187-471 (478)
62 KOG2047 mRNA splicing factor [ 99.8 2.3E-13 4.9E-18 148.7 52.9 659 36-765 23-709 (835)
63 PRK12370 invasion protein regu 99.8 2E-16 4.4E-21 188.2 31.4 269 157-437 251-534 (553)
64 KOG2047 mRNA splicing factor [ 99.8 1.4E-12 3.1E-17 142.6 56.0 601 112-785 44-693 (835)
65 PRK10747 putative protoheme IX 99.8 3.7E-15 7.9E-20 170.0 37.6 296 131-439 87-391 (398)
66 TIGR00540 hemY_coli hemY prote 99.8 7.4E-15 1.6E-19 168.5 39.7 290 107-405 97-399 (409)
67 KOG2376 Signal recognition par 99.7 6.1E-14 1.3E-18 152.5 42.3 149 540-736 356-513 (652)
68 KOG2376 Signal recognition par 99.7 5.8E-14 1.3E-18 152.7 41.7 459 106-617 24-515 (652)
69 KOG3785 Uncharacterized conser 99.7 1E-13 2.2E-18 140.8 40.7 450 137-707 31-493 (557)
70 KOG1125 TPR repeat-containing 99.7 4E-16 8.8E-21 169.6 21.8 265 201-469 289-563 (579)
71 PRK10747 putative protoheme IX 99.7 1.5E-14 3.2E-19 165.1 35.5 297 165-477 87-390 (398)
72 PRK11189 lipoprotein NlpI; Pro 99.7 4.4E-15 9.6E-20 161.9 29.7 152 108-264 40-195 (296)
73 KOG1125 TPR repeat-containing 99.7 1.2E-15 2.5E-20 166.0 24.2 257 452-769 289-561 (579)
74 COG3063 PilF Tfp pilus assembl 99.7 5.2E-15 1.1E-19 143.1 25.3 210 197-413 35-244 (250)
75 PRK11189 lipoprotein NlpI; Pro 99.7 6.3E-15 1.4E-19 160.7 27.6 149 141-294 39-191 (296)
76 KOG1840 Kinesin light chain [C 99.7 5.9E-14 1.3E-18 158.1 35.0 256 298-588 192-479 (508)
77 COG3063 PilF Tfp pilus assembl 99.7 1.1E-14 2.3E-19 141.0 24.1 201 129-336 36-238 (250)
78 KOG0550 Molecular chaperone (D 99.7 3.6E-15 7.9E-20 155.0 21.8 274 106-408 61-353 (486)
79 KOG1840 Kinesin light chain [C 99.7 1.4E-13 3E-18 155.1 35.6 255 263-553 194-478 (508)
80 TIGR02521 type_IV_pilW type IV 99.7 2.1E-14 4.6E-19 152.4 27.4 197 83-294 31-229 (234)
81 TIGR02521 type_IV_pilW type IV 99.7 3.2E-14 6.9E-19 151.1 28.2 202 197-405 31-232 (234)
82 COG2956 Predicted N-acetylgluc 99.7 1.3E-12 2.9E-17 132.1 36.4 300 131-476 38-346 (389)
83 KOG0550 Molecular chaperone (D 99.7 5E-15 1.1E-19 154.0 19.2 311 164-600 51-361 (486)
84 COG2956 Predicted N-acetylgluc 99.6 4.6E-13 1E-17 135.3 31.4 285 250-586 51-345 (389)
85 PF12569 NARP1: NMDA receptor- 99.6 8.6E-13 1.9E-17 151.0 37.4 317 128-477 4-334 (517)
86 PLN02789 farnesyltranstransfer 99.6 1.8E-13 3.9E-18 148.3 28.2 228 108-389 34-268 (320)
87 PLN02789 farnesyltranstransfer 99.6 1.2E-13 2.6E-18 149.6 26.8 240 521-781 33-304 (320)
88 cd05804 StaR_like StaR_like; a 99.6 2.6E-12 5.6E-17 146.2 36.5 205 124-333 2-214 (355)
89 cd05804 StaR_like StaR_like; a 99.6 2.8E-12 6E-17 145.9 33.8 201 81-297 4-215 (355)
90 PF12569 NARP1: NMDA receptor- 99.6 6.1E-12 1.3E-16 144.0 36.1 324 448-833 4-392 (517)
91 KOG4340 Uncharacterized conser 99.6 8.6E-12 1.9E-16 124.3 30.2 308 173-584 21-335 (459)
92 KOG4340 Uncharacterized conser 99.6 5.6E-12 1.2E-16 125.5 28.4 423 138-631 20-452 (459)
93 TIGR03302 OM_YfiO outer membra 99.5 2.7E-12 5.9E-17 136.3 24.6 194 123-373 28-234 (235)
94 PRK14720 transcript cleavage f 99.5 5E-09 1.1E-13 125.4 53.2 228 121-388 24-269 (906)
95 TIGR03302 OM_YfiO outer membra 99.5 3.9E-12 8.4E-17 135.1 24.4 194 158-408 29-235 (235)
96 PRK15359 type III secretion sy 99.5 8E-13 1.7E-17 126.8 15.9 127 114-244 13-139 (144)
97 COG3071 HemY Uncharacterized e 99.4 1.3E-09 2.8E-14 114.6 35.8 295 134-438 90-390 (400)
98 KOG1130 Predicted G-alpha GTPa 99.4 3.7E-12 8E-17 132.1 15.8 278 275-589 24-345 (639)
99 COG3071 HemY Uncharacterized e 99.4 2.3E-09 5E-14 112.7 33.6 293 168-476 90-389 (400)
100 PRK10370 formate-dependent nit 99.4 4.6E-11 1E-15 121.1 20.6 123 108-231 53-178 (198)
101 PRK15359 type III secretion sy 99.4 1.1E-11 2.4E-16 119.0 15.1 125 148-279 13-137 (144)
102 KOG1130 Predicted G-alpha GTPa 99.4 3.2E-11 6.8E-16 125.3 19.1 157 321-477 171-344 (639)
103 PRK14720 transcript cleavage f 99.3 4.1E-11 8.9E-16 142.8 20.9 225 520-795 26-268 (906)
104 KOG3060 Uncharacterized conser 99.3 3.5E-10 7.5E-15 111.3 23.4 211 51-276 23-233 (289)
105 KOG3617 WD40 and TPR repeat-co 99.3 1.3E-08 2.8E-13 114.6 38.2 403 306-784 913-1364(1416)
106 PRK04841 transcriptional regul 99.3 1.6E-09 3.5E-14 139.5 36.8 387 305-744 341-761 (903)
107 PRK04841 transcriptional regul 99.3 6.7E-09 1.4E-13 133.7 42.1 344 131-477 377-760 (903)
108 KOG3060 Uncharacterized conser 99.3 6.1E-10 1.3E-14 109.6 23.7 209 423-685 26-235 (289)
109 KOG2053 Mitochondrial inherita 99.3 1.1E-06 2.3E-11 101.7 53.3 239 138-409 19-259 (932)
110 KOG1128 Uncharacterized conser 99.3 9E-11 1.9E-15 131.5 19.9 218 42-298 400-617 (777)
111 COG5010 TadD Flp pilus assembl 99.3 2.7E-10 5.8E-15 113.7 20.0 178 113-295 52-229 (257)
112 TIGR02552 LcrH_SycD type III s 99.3 9E-11 2E-15 112.5 15.6 119 115-234 4-122 (135)
113 PRK10370 formate-dependent nit 99.3 1.6E-10 3.5E-15 117.2 17.9 124 655-785 53-179 (198)
114 KOG1128 Uncharacterized conser 99.3 5.4E-10 1.2E-14 125.3 21.8 238 448-762 398-635 (777)
115 COG5010 TadD Flp pilus assembl 99.2 1.6E-09 3.5E-14 108.2 21.3 178 146-331 51-228 (257)
116 PRK15179 Vi polysaccharide bio 99.2 1.6E-09 3.5E-14 129.1 23.5 155 113-271 71-225 (694)
117 TIGR02552 LcrH_SycD type III s 99.2 6.1E-10 1.3E-14 106.7 15.3 119 149-271 4-122 (135)
118 KOG0553 TPR repeat-containing 99.2 3.5E-10 7.5E-15 114.9 13.4 116 130-246 83-198 (304)
119 PRK15363 pathogenicity island 99.1 6.9E-10 1.5E-14 103.7 13.7 108 120-228 26-134 (157)
120 KOG3617 WD40 and TPR repeat-co 99.1 2.6E-06 5.6E-11 96.6 44.0 100 622-743 1074-1174(1416)
121 KOG2053 Mitochondrial inherita 99.1 7.7E-06 1.7E-10 94.8 48.8 486 107-625 22-539 (932)
122 PF04733 Coatomer_E: Coatomer 99.1 1E-09 2.2E-14 117.7 14.5 237 523-788 33-274 (290)
123 PRK15179 Vi polysaccharide bio 99.1 6.5E-09 1.4E-13 124.0 21.6 176 41-234 50-225 (694)
124 COG4783 Putative Zn-dependent 99.1 9.1E-09 2E-13 111.3 20.5 153 159-335 303-455 (484)
125 PRK10866 outer membrane biogen 99.1 4E-08 8.7E-13 102.9 24.9 204 126-368 30-238 (243)
126 KOG0553 TPR repeat-containing 99.1 2.1E-09 4.5E-14 109.4 13.8 109 105-214 92-200 (304)
127 PRK10866 outer membrane biogen 99.1 4E-08 8.6E-13 103.0 23.6 201 160-402 30-238 (243)
128 PF04733 Coatomer_E: Coatomer 99.0 2.7E-09 5.9E-14 114.5 14.7 258 136-412 9-272 (290)
129 COG4783 Putative Zn-dependent 99.0 6.7E-08 1.4E-12 104.8 24.8 153 193-372 303-455 (484)
130 PF13525 YfiO: Outer membrane 99.0 2.8E-08 6.1E-13 101.8 20.8 190 127-362 4-198 (203)
131 PLN03088 SGT1, suppressor of 99.0 7.4E-09 1.6E-13 115.6 16.7 113 131-244 5-117 (356)
132 KOG2471 TPR repeat-containing 99.0 2.2E-07 4.7E-12 99.5 25.7 165 380-571 210-381 (696)
133 PF13525 YfiO: Outer membrane 99.0 6.4E-08 1.4E-12 99.1 21.4 187 161-396 4-198 (203)
134 PRK15363 pathogenicity island 99.0 1.4E-08 3.1E-13 95.0 14.7 105 156-264 28-133 (157)
135 KOG1914 mRNA cleavage and poly 99.0 7E-05 1.5E-09 82.1 43.9 436 118-624 10-503 (656)
136 TIGR02795 tol_pal_ybgF tol-pal 98.9 3E-08 6.5E-13 92.5 14.7 108 128-235 2-114 (119)
137 KOG2300 Uncharacterized conser 98.9 0.00016 3.4E-09 78.3 42.9 424 163-670 8-514 (629)
138 COG4785 NlpI Lipoprotein NlpI, 98.9 1.5E-07 3.2E-12 90.4 17.7 133 81-226 63-196 (297)
139 KOG3616 Selective LIM binding 98.9 3.8E-05 8.2E-10 86.2 38.7 327 104-475 454-818 (1636)
140 PLN03088 SGT1, suppressor of 98.9 4.7E-08 1E-12 109.2 16.3 112 165-280 5-116 (356)
141 KOG1941 Acetylcholine receptor 98.9 5.4E-07 1.2E-11 93.1 22.2 305 277-618 15-356 (518)
142 KOG1914 mRNA cleavage and poly 98.8 0.00043 9.4E-09 76.2 45.2 396 152-622 10-464 (656)
143 KOG1941 Acetylcholine receptor 98.8 1.7E-06 3.7E-11 89.5 25.0 245 306-587 84-359 (518)
144 COG4785 NlpI Lipoprotein NlpI, 98.8 1.5E-07 3.3E-12 90.3 15.6 196 128-333 65-265 (297)
145 COG4235 Cytochrome c biogenesi 98.8 1.2E-07 2.6E-12 97.7 15.9 121 110-231 138-261 (287)
146 PRK15331 chaperone protein Sic 98.8 1E-07 2.2E-12 89.6 13.1 110 119-230 28-137 (165)
147 PRK02603 photosystem I assembl 98.8 2.3E-07 5E-12 92.6 16.1 119 125-267 32-153 (172)
148 KOG2300 Uncharacterized conser 98.7 0.00036 7.8E-09 75.6 39.4 213 537-765 287-540 (629)
149 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.5E-07 5.5E-12 86.2 14.4 109 306-414 3-114 (119)
150 KOG1070 rRNA processing protei 98.7 4.2E-06 9.1E-11 100.6 27.3 229 17-264 1435-1664(1710)
151 PF13414 TPR_11: TPR repeat; P 98.7 4.8E-08 1.1E-12 80.7 8.1 67 127-193 2-69 (69)
152 cd00189 TPR Tetratricopeptide 98.7 1.4E-07 3E-12 83.5 11.7 98 130-228 2-99 (100)
153 KOG1070 rRNA processing protei 98.7 6.5E-06 1.4E-10 99.1 28.2 220 178-406 1440-1664(1710)
154 COG4235 Cytochrome c biogenesi 98.7 6.8E-07 1.5E-11 92.3 17.5 120 178-298 138-257 (287)
155 PRK11906 transcriptional regul 98.7 9.1E-07 2E-11 96.9 19.4 135 132-270 259-408 (458)
156 PRK11906 transcriptional regul 98.7 1.2E-06 2.5E-11 96.1 20.1 149 109-262 273-435 (458)
157 KOG2471 TPR repeat-containing 98.7 5.8E-05 1.2E-09 81.5 31.9 277 109-389 32-382 (696)
158 PRK10803 tol-pal system protei 98.7 5.6E-07 1.2E-11 94.9 16.9 107 128-234 142-254 (263)
159 PF12895 Apc3: Anaphase-promot 98.7 4.3E-08 9.4E-13 84.5 7.0 81 141-223 2-84 (84)
160 CHL00033 ycf3 photosystem I as 98.7 5.8E-07 1.3E-11 89.4 16.1 99 112-211 17-120 (168)
161 PF09976 TPR_21: Tetratricopep 98.7 1E-06 2.3E-11 85.0 17.2 110 112-223 29-144 (145)
162 PRK10803 tol-pal system protei 98.7 3.7E-07 8E-12 96.2 14.7 110 674-785 141-252 (263)
163 PF13414 TPR_11: TPR repeat; P 98.7 9.4E-08 2E-12 79.0 8.1 67 161-228 2-69 (69)
164 COG4105 ComL DNA uptake lipopr 98.6 7.3E-06 1.6E-10 82.8 22.4 190 127-365 33-227 (254)
165 KOG3081 Vesicle coat complex C 98.6 9.9E-06 2.1E-10 81.1 22.8 151 566-738 115-265 (299)
166 PF09976 TPR_21: Tetratricopep 98.6 1.1E-06 2.4E-11 84.8 16.2 119 139-261 22-145 (145)
167 KOG3081 Vesicle coat complex C 98.6 1.3E-05 2.8E-10 80.3 23.0 234 523-787 39-279 (299)
168 PRK10153 DNA-binding transcrip 98.6 2E-06 4.3E-11 100.0 20.4 141 124-269 333-488 (517)
169 COG1729 Uncharacterized protei 98.6 4.7E-07 1E-11 92.3 13.2 108 678-787 144-252 (262)
170 KOG0543 FKBP-type peptidyl-pro 98.6 6.4E-07 1.4E-11 95.5 14.5 139 42-191 210-355 (397)
171 PF13432 TPR_16: Tetratricopep 98.6 1.3E-07 2.7E-12 77.0 7.2 63 133-195 2-64 (65)
172 COG4105 ComL DNA uptake lipopr 98.6 1.4E-05 3.1E-10 80.7 23.2 200 523-784 32-238 (254)
173 KOG3616 Selective LIM binding 98.6 0.0028 6E-08 71.8 54.3 178 274-476 712-910 (1636)
174 PF12895 Apc3: Anaphase-promot 98.6 5.7E-08 1.2E-12 83.8 5.3 81 107-188 2-84 (84)
175 PRK02603 photosystem I assembl 98.6 9.6E-07 2.1E-11 88.2 14.9 108 302-409 32-153 (172)
176 PF14938 SNAP: Soluble NSF att 98.6 1.2E-06 2.6E-11 95.0 16.7 203 383-622 42-266 (282)
177 KOG0543 FKBP-type peptidyl-pro 98.6 7.2E-07 1.6E-11 95.2 14.3 130 311-440 214-357 (397)
178 cd00189 TPR Tetratricopeptide 98.6 7.3E-07 1.6E-11 78.8 12.2 98 164-265 2-99 (100)
179 KOG0985 Vesicle coat protein c 98.6 0.0045 9.7E-08 72.9 51.9 537 37-688 675-1326(1666)
180 PRK10153 DNA-binding transcrip 98.6 1.4E-06 3.1E-11 101.3 17.1 125 107-233 355-489 (517)
181 COG0457 NrfG FOG: TPR repeat [ 98.5 0.0002 4.4E-09 75.6 32.6 119 109-228 38-161 (291)
182 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00029 6.3E-09 74.3 33.7 226 142-408 37-268 (291)
183 KOG4648 Uncharacterized conser 98.5 3.9E-08 8.5E-13 100.4 3.0 244 131-418 100-343 (536)
184 PF13432 TPR_16: Tetratricopep 98.5 3E-07 6.5E-12 74.8 7.4 64 167-231 2-65 (65)
185 CHL00033 ycf3 photosystem I as 98.5 3.2E-06 6.9E-11 84.1 15.5 109 50-176 9-120 (168)
186 PF13512 TPR_18: Tetratricopep 98.5 3.5E-06 7.6E-11 77.7 14.2 86 127-212 9-99 (142)
187 PF14938 SNAP: Soluble NSF att 98.5 2.3E-06 5E-11 92.9 15.1 183 391-625 30-228 (282)
188 PF10345 Cohesin_load: Cohesin 98.5 0.011 2.3E-07 71.9 50.0 472 250-778 37-605 (608)
189 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.5E-06 9.7E-11 92.6 16.9 118 137-261 178-295 (395)
190 COG1729 Uncharacterized protei 98.4 4.4E-06 9.5E-11 85.3 15.1 110 271-380 144-253 (262)
191 PRK15331 chaperone protein Sic 98.4 2.4E-06 5.1E-11 80.5 12.0 106 158-268 33-138 (165)
192 COG3898 Uncharacterized membra 98.4 0.0012 2.6E-08 69.9 31.2 263 128-404 120-391 (531)
193 COG3898 Uncharacterized membra 98.4 0.0014 3E-08 69.3 31.4 293 171-478 93-393 (531)
194 KOG1258 mRNA processing protei 98.4 0.0096 2.1E-07 67.5 39.9 185 449-688 298-488 (577)
195 PF13512 TPR_18: Tetratricopep 98.4 9.5E-06 2.1E-10 74.8 13.5 110 674-785 9-134 (142)
196 PF07079 DUF1347: Protein of u 98.4 0.0077 1.7E-07 65.4 46.1 439 105-619 17-521 (549)
197 KOG1258 mRNA processing protei 98.3 0.013 2.9E-07 66.3 40.0 394 144-606 61-488 (577)
198 PF10345 Cohesin_load: Cohesin 98.3 0.011 2.3E-07 71.8 42.7 409 322-783 38-567 (608)
199 PF14559 TPR_19: Tetratricopep 98.3 1.9E-06 4E-11 70.9 7.0 56 140-195 3-58 (68)
200 COG5107 RNA14 Pre-mRNA 3'-end 98.3 0.01 2.3E-07 64.1 35.8 424 116-622 30-495 (660)
201 PF12688 TPR_5: Tetratrico pep 98.3 1.7E-05 3.8E-10 72.2 13.5 97 128-225 1-103 (120)
202 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.9E-10 87.9 16.0 118 171-295 178-295 (395)
203 PF07079 DUF1347: Protein of u 98.3 0.012 2.6E-07 63.9 39.7 132 655-793 394-539 (549)
204 PF14559 TPR_19: Tetratricopep 98.3 2.4E-06 5.1E-11 70.3 6.9 65 173-238 2-66 (68)
205 KOG4234 TPR repeat-containing 98.2 1.4E-05 2.9E-10 76.2 12.0 102 132-234 99-205 (271)
206 PF12688 TPR_5: Tetratrico pep 98.2 2.1E-05 4.5E-10 71.7 12.7 98 306-403 2-102 (120)
207 PF13371 TPR_9: Tetratricopept 98.2 6.2E-06 1.4E-10 68.9 8.7 62 171-233 4-65 (73)
208 KOG2796 Uncharacterized conser 98.2 0.00056 1.2E-08 68.4 22.8 234 39-300 68-318 (366)
209 KOG4234 TPR repeat-containing 98.2 1.9E-05 4.2E-10 75.2 11.7 110 166-278 99-212 (271)
210 KOG2796 Uncharacterized conser 98.2 0.00023 4.9E-09 71.1 19.2 162 541-723 165-332 (366)
211 PF13424 TPR_12: Tetratricopep 98.1 7.3E-06 1.6E-10 69.5 7.4 69 712-780 3-76 (78)
212 KOG4648 Uncharacterized conser 98.1 9.6E-07 2.1E-11 90.5 1.9 233 308-597 100-339 (536)
213 PF13371 TPR_9: Tetratricopept 98.1 1.5E-05 3.3E-10 66.5 8.8 70 349-418 2-71 (73)
214 COG4700 Uncharacterized protei 98.1 0.00022 4.8E-09 67.4 16.9 133 108-246 74-208 (251)
215 COG4700 Uncharacterized protei 98.1 0.00062 1.3E-08 64.5 18.8 110 655-770 103-213 (251)
216 KOG4507 Uncharacterized conser 98.1 0.00094 2E-08 73.9 23.0 117 117-234 202-320 (886)
217 KOG4555 TPR repeat-containing 98.0 0.00034 7.3E-09 62.1 15.1 99 131-229 46-147 (175)
218 PF13424 TPR_12: Tetratricopep 97.9 1.5E-05 3.3E-10 67.5 5.2 73 672-744 2-76 (78)
219 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.9E-05 1.1E-09 83.6 9.8 69 123-191 70-141 (453)
220 KOG2396 HAT (Half-A-TPR) repea 97.9 0.073 1.6E-06 58.9 40.9 101 522-622 457-559 (568)
221 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.067 1.5E-06 58.1 39.9 479 150-746 30-534 (660)
222 KOG1586 Protein required for f 97.8 0.0061 1.3E-07 60.3 22.1 106 680-785 118-230 (288)
223 KOG4555 TPR repeat-containing 97.8 0.00036 7.8E-09 61.9 12.2 99 679-782 47-147 (175)
224 KOG1586 Protein required for f 97.8 0.0046 1E-07 61.1 20.8 99 527-625 115-227 (288)
225 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 7.9E-05 1.7E-09 82.0 9.9 70 157-226 70-141 (453)
226 KOG1550 Extracellular protein 97.8 0.005 1.1E-07 73.4 25.2 264 524-833 243-539 (552)
227 PF06552 TOM20_plant: Plant sp 97.8 0.00027 5.9E-09 67.4 11.3 33 109-141 6-38 (186)
228 KOG2610 Uncharacterized conser 97.8 0.0021 4.5E-08 66.6 18.3 174 565-750 109-283 (491)
229 KOG4507 Uncharacterized conser 97.7 0.0069 1.5E-07 67.4 22.8 112 676-793 607-719 (886)
230 PF05843 Suf: Suppressor of fo 97.7 0.001 2.3E-08 71.8 16.9 127 655-786 15-143 (280)
231 KOG1550 Extracellular protein 97.7 0.016 3.4E-07 69.1 27.7 175 110-293 228-422 (552)
232 PF05843 Suf: Suppressor of fo 97.7 0.001 2.2E-08 71.9 15.6 134 130-267 3-140 (280)
233 PF06552 TOM20_plant: Plant sp 97.6 0.00048 1E-08 65.7 11.0 96 144-240 7-123 (186)
234 KOG1585 Protein required for f 97.6 0.0083 1.8E-07 59.8 19.2 197 350-584 39-252 (308)
235 KOG4642 Chaperone-dependent E3 97.6 0.00014 3.1E-09 71.6 6.9 93 167-263 15-107 (284)
236 KOG4642 Chaperone-dependent E3 97.6 0.00048 1E-08 68.1 10.5 122 348-469 16-138 (284)
237 KOG2396 HAT (Half-A-TPR) repea 97.6 0.21 4.6E-06 55.4 42.6 88 112-200 89-177 (568)
238 PF10300 DUF3808: Protein of u 97.6 0.1 2.2E-06 60.7 31.2 121 283-406 248-377 (468)
239 KOG1585 Protein required for f 97.6 0.009 2E-07 59.5 18.7 203 377-617 32-251 (308)
240 PF04184 ST7: ST7 protein; In 97.6 0.0044 9.5E-08 68.5 18.3 187 568-785 177-381 (539)
241 PF10300 DUF3808: Protein of u 97.5 0.0017 3.7E-08 75.4 16.0 172 45-225 193-375 (468)
242 PF13428 TPR_14: Tetratricopep 97.5 0.00022 4.8E-09 52.3 5.6 43 128-170 1-43 (44)
243 KOG2610 Uncharacterized conser 97.5 0.0049 1.1E-07 64.0 16.6 162 311-476 109-275 (491)
244 PF04184 ST7: ST7 protein; In 97.5 0.0033 7E-08 69.5 15.9 165 106-272 180-384 (539)
245 KOG0985 Vesicle coat protein c 97.4 0.5 1.1E-05 56.7 57.9 350 39-471 983-1335(1666)
246 PF13281 DUF4071: Domain of un 97.4 0.015 3.2E-07 63.8 20.2 132 559-695 141-279 (374)
247 PF13428 TPR_14: Tetratricopep 97.4 0.00036 7.7E-09 51.2 5.5 42 198-239 2-43 (44)
248 KOG0376 Serine-threonine phosp 97.4 0.00024 5.2E-09 77.8 5.6 99 107-206 17-115 (476)
249 PF08631 SPO22: Meiosis protei 97.3 0.23 5E-06 53.7 28.5 68 232-299 85-152 (278)
250 COG2909 MalT ATP-dependent tra 97.3 0.66 1.4E-05 55.5 33.4 277 302-624 344-649 (894)
251 PF02259 FAT: FAT domain; Int 97.3 0.066 1.4E-06 60.6 25.6 151 264-420 142-302 (352)
252 KOG0376 Serine-threonine phosp 97.2 0.00049 1.1E-08 75.5 6.4 110 132-242 8-117 (476)
253 KOG0545 Aryl-hydrocarbon recep 97.1 0.0053 1.1E-07 61.0 11.7 122 448-594 178-299 (329)
254 PF13281 DUF4071: Domain of un 97.1 0.066 1.4E-06 58.8 21.3 104 164-268 143-260 (374)
255 PF13431 TPR_17: Tetratricopep 97.1 0.00043 9.3E-09 47.2 2.8 32 117-148 2-33 (34)
256 PF02259 FAT: FAT domain; Int 97.1 0.34 7.4E-06 54.7 28.4 159 672-833 143-339 (352)
257 PF08631 SPO22: Meiosis protei 97.1 0.22 4.8E-06 53.8 25.2 101 524-624 34-152 (278)
258 KOG0530 Protein farnesyltransf 97.1 0.13 2.8E-06 52.2 20.8 183 112-295 61-251 (318)
259 PRK15180 Vi polysaccharide bio 97.1 0.11 2.4E-06 56.8 21.7 127 107-234 302-428 (831)
260 PF13431 TPR_17: Tetratricopep 97.1 0.00044 9.5E-09 47.1 2.6 32 664-695 2-33 (34)
261 COG2909 MalT ATP-dependent tra 97.1 0.66 1.4E-05 55.6 29.7 238 525-775 415-684 (894)
262 KOG2041 WD40 repeat protein [G 97.1 0.94 2E-05 52.2 31.9 187 250-474 750-936 (1189)
263 KOG0545 Aryl-hydrocarbon recep 97.1 0.0049 1.1E-07 61.2 10.5 100 128-228 178-295 (329)
264 KOG2062 26S proteasome regulat 97.0 1 2.2E-05 52.5 40.6 304 353-725 368-690 (929)
265 KOG0890 Protein kinase of the 97.0 2.4 5.3E-05 56.4 41.0 378 273-684 1388-1798(2382)
266 COG3118 Thioredoxin domain-con 97.0 0.072 1.6E-06 55.4 19.1 133 128-264 134-266 (304)
267 KOG0551 Hsp90 co-chaperone CNS 97.0 0.036 7.9E-07 58.0 16.7 79 715-793 82-162 (390)
268 PF07719 TPR_2: Tetratricopept 97.0 0.0017 3.7E-08 44.4 5.1 33 751-783 2-34 (34)
269 PF04910 Tcf25: Transcriptiona 97.0 0.019 4E-07 64.1 15.9 175 25-229 25-225 (360)
270 COG2976 Uncharacterized protei 96.9 0.077 1.7E-06 51.6 16.9 103 306-409 90-192 (207)
271 KOG0890 Protein kinase of the 96.9 3.1 6.7E-05 55.4 44.2 363 45-441 1388-1787(2382)
272 PF00515 TPR_1: Tetratricopept 96.9 0.002 4.3E-08 44.1 4.6 32 751-782 2-33 (34)
273 COG2976 Uncharacterized protei 96.8 0.051 1.1E-06 52.8 15.0 103 269-375 90-192 (207)
274 PRK13184 pknD serine/threonine 96.8 2.5 5.4E-05 52.9 33.5 141 44-195 479-624 (932)
275 PF00515 TPR_1: Tetratricopept 96.8 0.0022 4.8E-08 43.9 4.3 32 129-160 2-33 (34)
276 PF07719 TPR_2: Tetratricopept 96.8 0.0031 6.8E-08 43.1 4.9 33 129-161 2-34 (34)
277 KOG0551 Hsp90 co-chaperone CNS 96.7 0.043 9.4E-07 57.4 14.8 100 128-228 81-184 (390)
278 KOG0128 RNA-binding protein SA 96.7 2.1 4.5E-05 50.9 34.5 262 141-438 92-376 (881)
279 KOG0128 RNA-binding protein SA 96.7 2.1 4.6E-05 50.9 37.5 114 655-772 440-556 (881)
280 KOG0530 Protein farnesyltransf 96.7 0.3 6.4E-06 49.7 19.7 146 524-673 146-301 (318)
281 PF08424 NRDE-2: NRDE-2, neces 96.7 0.11 2.4E-06 57.4 18.9 83 179-262 48-130 (321)
282 KOG2041 WD40 repeat protein [G 96.7 1.9 4.1E-05 49.8 29.6 267 15-331 660-936 (1189)
283 COG3118 Thioredoxin domain-con 96.6 0.1 2.2E-06 54.4 16.5 151 161-319 133-286 (304)
284 PRK15180 Vi polysaccharide bio 96.6 1.6 3.5E-05 48.1 25.8 120 208-333 300-419 (831)
285 COG0790 FOG: TPR repeat, SEL1 96.5 0.26 5.6E-06 54.0 20.5 172 537-728 53-236 (292)
286 PRK13184 pknD serine/threonine 96.5 2.1 4.5E-05 53.6 29.5 104 274-381 481-591 (932)
287 KOG3364 Membrane protein invol 96.3 0.04 8.7E-07 49.8 9.9 87 713-799 31-120 (149)
288 PF04910 Tcf25: Transcriptiona 96.3 0.15 3.2E-06 57.0 16.8 150 119-268 31-227 (360)
289 PF03704 BTAD: Bacterial trans 96.3 0.2 4.4E-06 48.1 15.9 125 309-448 10-136 (146)
290 PF03704 BTAD: Bacterial trans 96.2 0.095 2.1E-06 50.5 13.2 60 164-224 64-123 (146)
291 KOG1308 Hsp70-interacting prot 96.1 0.0029 6.2E-08 66.3 2.3 94 134-228 120-213 (377)
292 KOG1464 COP9 signalosome, subu 96.1 0.6 1.3E-05 47.5 18.1 113 529-642 149-285 (440)
293 COG0790 FOG: TPR repeat, SEL1 96.0 0.96 2.1E-05 49.5 21.9 167 107-282 54-236 (292)
294 PF04781 DUF627: Protein of un 96.0 0.041 9E-07 48.4 8.4 106 46-157 2-107 (111)
295 KOG2062 26S proteasome regulat 96.0 4.6 0.0001 47.4 37.7 252 524-799 396-657 (929)
296 PF08424 NRDE-2: NRDE-2, neces 95.9 0.59 1.3E-05 51.6 19.5 142 337-478 14-184 (321)
297 KOG1464 COP9 signalosome, subu 95.9 0.54 1.2E-05 47.8 16.7 221 356-607 41-286 (440)
298 PF13174 TPR_6: Tetratricopept 95.9 0.012 2.5E-07 39.8 3.8 30 753-782 3-32 (33)
299 KOG1308 Hsp70-interacting prot 95.9 0.0046 9.9E-08 64.9 2.3 89 107-195 127-215 (377)
300 PF13174 TPR_6: Tetratricopept 95.8 0.02 4.4E-07 38.6 4.7 32 715-746 1-32 (33)
301 COG5159 RPN6 26S proteasome re 95.7 1.9 4.2E-05 44.4 20.0 177 449-673 126-317 (421)
302 KOG1463 26S proteasome regulat 95.7 3.4 7.5E-05 43.9 23.8 165 272-436 132-314 (411)
303 PF13176 TPR_7: Tetratricopept 95.7 0.015 3.3E-07 40.2 3.9 28 716-743 1-28 (36)
304 PF13181 TPR_8: Tetratricopept 95.7 0.018 4E-07 39.2 4.2 31 751-781 2-32 (34)
305 PF14853 Fis1_TPR_C: Fis1 C-te 95.6 0.064 1.4E-06 40.6 7.1 43 751-793 2-44 (53)
306 KOG2114 Vacuolar assembly/sort 95.6 7.2 0.00016 46.7 32.8 246 275-594 341-596 (933)
307 PF09613 HrpB1_HrpK: Bacterial 95.5 0.18 3.9E-06 48.0 11.3 85 129-214 11-95 (160)
308 PF13181 TPR_8: Tetratricopept 95.5 0.025 5.5E-07 38.5 4.2 30 130-159 3-32 (34)
309 KOG3783 Uncharacterized conser 95.4 5.6 0.00012 45.3 24.0 252 251-558 250-524 (546)
310 KOG2422 Uncharacterized conser 95.4 1.2 2.6E-05 50.5 18.7 158 108-266 252-451 (665)
311 PF04781 DUF627: Protein of un 95.0 0.29 6.2E-06 43.2 10.1 103 168-296 2-106 (111)
312 COG5159 RPN6 26S proteasome re 95.0 5.3 0.00012 41.4 22.8 164 272-435 129-311 (421)
313 KOG3783 Uncharacterized conser 95.0 6 0.00013 45.1 22.6 97 112-208 251-349 (546)
314 PF09986 DUF2225: Uncharacteri 94.9 0.27 5.8E-06 50.4 11.3 71 713-783 117-198 (214)
315 COG4649 Uncharacterized protei 94.8 1 2.3E-05 42.9 13.8 98 271-370 97-195 (221)
316 KOG1463 26S proteasome regulat 94.8 6.8 0.00015 41.8 23.7 179 236-420 133-328 (411)
317 PF09613 HrpB1_HrpK: Bacterial 94.8 0.38 8.1E-06 45.9 11.0 69 111-179 27-95 (160)
318 PF14561 TPR_20: Tetratricopep 94.7 0.27 5.9E-06 42.4 9.3 65 148-212 8-73 (90)
319 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.16 3.5E-06 38.5 6.5 41 130-170 3-43 (53)
320 KOG0163 Myosin class VI heavy 94.3 6.2 0.00013 46.1 20.9 24 679-706 750-773 (1259)
321 COG4649 Uncharacterized protei 94.1 4.4 9.6E-05 38.8 16.1 126 134-262 64-195 (221)
322 KOG2422 Uncharacterized conser 93.8 9.4 0.0002 43.8 20.9 156 538-706 251-450 (665)
323 KOG3824 Huntingtin interacting 93.8 0.27 5.9E-06 50.9 8.3 65 106-170 128-192 (472)
324 PRK10941 hypothetical protein; 93.7 0.54 1.2E-05 49.8 10.9 76 345-420 184-259 (269)
325 PRK10941 hypothetical protein; 93.7 0.48 1E-05 50.2 10.5 60 136-195 189-248 (269)
326 PF13176 TPR_7: Tetratricopept 93.6 0.11 2.5E-06 35.9 3.8 29 752-780 1-29 (36)
327 PF14561 TPR_20: Tetratricopep 93.4 0.66 1.4E-05 40.0 9.1 65 113-177 7-73 (90)
328 TIGR02561 HrpB1_HrpK type III 93.4 2.1 4.7E-05 40.1 12.7 83 131-214 13-95 (153)
329 KOG3364 Membrane protein invol 93.4 1.3 2.8E-05 40.5 10.9 79 161-239 31-113 (149)
330 KOG3807 Predicted membrane pro 93.3 11 0.00024 39.9 18.9 200 201-418 188-404 (556)
331 PRK11619 lytic murein transgly 93.2 26 0.00056 42.7 41.0 213 347-583 246-463 (644)
332 PF09986 DUF2225: Uncharacteri 93.0 1.2 2.6E-05 45.7 11.7 102 423-554 91-194 (214)
333 KOG1029 Endocytic adaptor prot 92.9 1.3 2.8E-05 51.6 12.7 14 871-884 357-370 (1118)
334 PF10602 RPN7: 26S proteasome 92.9 0.57 1.2E-05 46.5 9.1 65 269-333 37-101 (177)
335 KOG3824 Huntingtin interacting 92.9 0.33 7.2E-06 50.2 7.4 69 170-239 124-192 (472)
336 COG5116 RPN2 26S proteasome re 92.5 23 0.0005 40.5 24.8 193 22-228 39-239 (926)
337 COG1747 Uncharacterized N-term 92.4 23 0.0005 40.1 22.1 208 340-593 64-293 (711)
338 KOG2581 26S proteasome regulat 92.3 20 0.00044 39.3 20.6 102 524-625 168-279 (493)
339 PF12968 DUF3856: Domain of Un 92.3 3.9 8.5E-05 36.4 12.0 95 685-779 19-129 (144)
340 TIGR02561 HrpB1_HrpK type III 92.2 1.5 3.2E-05 41.1 10.1 68 112-179 28-95 (153)
341 smart00028 TPR Tetratricopepti 92.2 0.24 5.3E-06 32.4 4.0 31 130-160 3-33 (34)
342 PF10602 RPN7: 26S proteasome 92.1 1.2 2.7E-05 44.1 10.3 104 676-781 37-144 (177)
343 PF12968 DUF3856: Domain of Un 91.8 8.2 0.00018 34.5 13.4 110 412-553 9-128 (144)
344 smart00028 TPR Tetratricopepti 91.8 0.27 5.9E-06 32.2 3.8 29 715-743 2-30 (34)
345 PF04190 DUF410: Protein of un 91.7 21 0.00045 38.0 21.7 140 521-687 86-240 (260)
346 PF13041 PPR_2: PPR repeat fam 91.5 0.68 1.5E-05 34.8 6.0 48 713-761 2-49 (50)
347 KOG1538 Uncharacterized conser 91.4 15 0.00034 42.4 18.6 58 130-187 587-657 (1081)
348 PF10579 Rapsyn_N: Rapsyn N-te 91.3 0.85 1.8E-05 37.4 6.5 58 718-775 10-68 (80)
349 KOG2412 Nuclear-export-signal 91.2 27 0.00058 39.9 19.9 10 753-762 123-132 (591)
350 PRK12798 chemotaxis protein; R 91.0 27 0.00059 38.9 19.7 176 592-782 111-289 (421)
351 KOG3807 Predicted membrane pro 90.6 23 0.00049 37.7 17.6 21 768-788 380-400 (556)
352 PRK11619 lytic murein transgly 90.4 51 0.0011 40.3 38.6 321 41-403 34-373 (644)
353 PF12854 PPR_1: PPR repeat 90.1 0.61 1.3E-05 31.7 4.1 29 38-66 5-33 (34)
354 KOG1538 Uncharacterized conser 90.0 44 0.00096 39.0 22.2 27 524-550 803-829 (1081)
355 COG3914 Spy Predicted O-linked 90.0 4.9 0.00011 46.2 13.3 127 113-240 50-185 (620)
356 KOG1310 WD40 repeat protein [G 89.9 0.81 1.8E-05 51.1 7.0 96 134-230 380-478 (758)
357 COG1747 Uncharacterized N-term 89.7 42 0.0009 38.2 26.7 97 159-262 63-159 (711)
358 KOG1029 Endocytic adaptor prot 89.7 2.8 6.1E-05 49.0 11.2 10 876-885 352-361 (1118)
359 KOG0529 Protein geranylgeranyl 89.5 28 0.00062 38.5 18.1 163 111-273 46-234 (421)
360 COG5191 Uncharacterized conser 89.4 0.61 1.3E-05 48.5 5.3 72 124-195 103-175 (435)
361 COG3914 Spy Predicted O-linked 89.3 14 0.0003 42.7 16.1 128 147-278 50-186 (620)
362 PF12862 Apc5: Anaphase-promot 89.2 2.3 5E-05 37.1 8.2 65 686-750 9-77 (94)
363 PTZ00266 NIMA-related protein 89.1 2.1 4.6E-05 53.8 10.8 9 1017-1025 602-610 (1021)
364 COG5191 Uncharacterized conser 89.0 0.97 2.1E-05 47.1 6.4 89 151-240 96-185 (435)
365 PF13374 TPR_10: Tetratricopep 89.0 0.77 1.7E-05 32.7 4.3 30 715-744 3-32 (42)
366 COG4976 Predicted methyltransf 88.8 0.65 1.4E-05 46.4 4.8 58 172-230 5-62 (287)
367 PF04190 DUF410: Protein of un 88.1 40 0.00086 35.9 21.3 156 106-282 69-242 (260)
368 KOG1839 Uncharacterized protei 87.9 3.9 8.5E-05 51.5 11.7 173 346-553 936-1127(1236)
369 KOG2581 26S proteasome regulat 87.3 20 0.00042 39.5 14.9 107 41-161 170-280 (493)
370 PF10579 Rapsyn_N: Rapsyn N-te 87.1 6.1 0.00013 32.6 8.5 61 200-260 9-69 (80)
371 KOG4422 Uncharacterized conser 87.0 55 0.0012 36.4 32.3 200 123-332 202-425 (625)
372 COG4976 Predicted methyltransf 87.0 1.2 2.6E-05 44.6 5.4 59 137-195 4-62 (287)
373 PF13374 TPR_10: Tetratricopep 86.9 1.3 2.8E-05 31.4 4.5 29 751-779 3-31 (42)
374 PF13041 PPR_2: PPR repeat fam 86.7 1.3 2.8E-05 33.2 4.5 45 593-637 3-47 (50)
375 PF15015 NYD-SP12_N: Spermatog 86.5 13 0.00027 41.0 13.0 86 168-256 182-284 (569)
376 PF11207 DUF2989: Protein of u 86.2 5 0.00011 40.0 9.2 81 685-770 116-198 (203)
377 PF12854 PPR_1: PPR repeat 86.1 1.3 2.9E-05 30.0 3.8 29 747-775 4-32 (34)
378 PF04053 Coatomer_WDAD: Coatom 86.0 14 0.0003 42.7 14.2 133 306-475 296-429 (443)
379 KOG2561 Adaptor protein NUB1, 85.6 14 0.0003 40.8 12.8 24 755-778 272-295 (568)
380 KOG1839 Uncharacterized protei 85.6 6.3 0.00014 49.8 11.8 142 264-405 969-1128(1236)
381 PF04053 Coatomer_WDAD: Coatom 85.4 31 0.00068 39.8 16.8 132 135-295 268-400 (443)
382 COG2912 Uncharacterized conser 84.7 5 0.00011 41.9 8.9 63 108-170 195-257 (269)
383 KOG3654 Uncharacterized CH dom 84.6 8.4 0.00018 42.8 10.8 13 1011-1023 511-523 (708)
384 PF12862 Apc5: Anaphase-promot 84.6 6.3 0.00014 34.4 8.4 55 138-192 8-71 (94)
385 KOG1310 WD40 repeat protein [G 84.1 3.4 7.3E-05 46.5 7.7 89 107-195 387-478 (758)
386 PF11207 DUF2989: Protein of u 83.9 8.4 0.00018 38.4 9.6 75 393-468 123-198 (203)
387 KOG0163 Myosin class VI heavy 83.7 1E+02 0.0023 36.7 22.1 20 662-681 763-782 (1259)
388 PF07720 TPR_3: Tetratricopept 83.6 3.4 7.4E-05 28.5 4.9 20 131-150 4-23 (36)
389 PF15015 NYD-SP12_N: Spermatog 83.3 5.3 0.00011 43.8 8.5 31 39-69 171-205 (569)
390 KOG1832 HIV-1 Vpr-binding prot 83.2 1 2.2E-05 53.3 3.5 12 821-832 1258-1269(1516)
391 PF11817 Foie-gras_1: Foie gra 83.1 57 0.0012 34.4 16.5 86 692-777 155-245 (247)
392 PF07720 TPR_3: Tetratricopept 83.0 3.8 8.3E-05 28.2 4.9 30 164-193 3-34 (36)
393 COG3629 DnrI DNA-binding trans 82.9 23 0.0005 37.7 13.1 62 130-191 155-216 (280)
394 PF10516 SHNi-TPR: SHNi-TPR; 82.8 2.5 5.4E-05 29.5 4.0 29 715-743 2-30 (38)
395 PF07721 TPR_4: Tetratricopept 82.3 1.8 3.9E-05 27.3 2.9 22 716-737 3-24 (26)
396 COG3629 DnrI DNA-binding trans 82.2 22 0.00048 37.8 12.6 65 375-439 152-217 (280)
397 PF06936 Selenoprotein_S: Sele 81.3 11 0.00025 37.4 9.5 15 917-931 112-126 (190)
398 PLN03237 DNA topoisomerase 2; 79.9 27 0.00059 45.7 14.5 31 1007-1037 1259-1293(1465)
399 PF11817 Foie-gras_1: Foie gra 79.9 80 0.0017 33.3 16.3 91 424-551 153-244 (247)
400 PF07721 TPR_4: Tetratricopept 79.3 2.8 6.2E-05 26.3 3.1 23 130-152 3-25 (26)
401 COG2912 Uncharacterized conser 79.1 16 0.00034 38.4 10.1 76 345-420 184-259 (269)
402 KOG4014 Uncharacterized conser 78.3 70 0.0015 31.3 14.1 48 655-704 87-141 (248)
403 KOG1832 HIV-1 Vpr-binding prot 78.2 1.2 2.6E-05 52.7 1.9 14 1063-1076 1488-1501(1516)
404 KOG0529 Protein geranylgeranyl 77.9 82 0.0018 35.1 15.3 136 104-240 85-238 (421)
405 PF11214 Med2: Mediator comple 77.3 40 0.00086 29.5 10.1 14 854-867 59-72 (105)
406 COG4941 Predicted RNA polymera 77.1 1.1E+02 0.0023 33.2 15.3 132 655-792 270-407 (415)
407 PRK12798 chemotaxis protein; R 76.7 1.4E+02 0.003 33.7 22.1 29 343-371 258-286 (421)
408 PF10255 Paf67: RNA polymerase 76.0 27 0.00057 39.4 11.5 64 307-370 124-192 (404)
409 PF10255 Paf67: RNA polymerase 75.4 4.8 0.0001 45.2 5.5 63 163-225 123-192 (404)
410 PRK06568 F0F1 ATP synthase sub 74.3 85 0.0018 30.2 13.2 45 840-884 28-72 (154)
411 PF10446 DUF2457: Protein of u 74.0 4.7 0.0001 44.5 4.9 11 1021-1031 107-117 (458)
412 KOG4014 Uncharacterized conser 73.9 93 0.002 30.5 16.0 186 229-441 32-236 (248)
413 KOG2063 Vacuolar assembly/sort 73.8 1.5E+02 0.0032 37.2 17.7 114 307-420 506-636 (877)
414 PF04840 Vps16_C: Vps16, C-ter 73.6 1.5E+02 0.0032 32.7 25.4 80 524-617 207-286 (319)
415 PF00244 14-3-3: 14-3-3 protei 73.3 1.2E+02 0.0027 31.6 15.9 43 165-207 4-46 (236)
416 PTZ00121 MAEBL; Provisional 72.9 38 0.00083 43.4 12.4 14 114-127 136-149 (2084)
417 PF04097 Nic96: Nup93/Nic96; 71.6 62 0.0013 39.4 14.3 355 203-619 117-531 (613)
418 COG0711 AtpF F0F1-type ATP syn 71.4 1E+02 0.0022 30.0 13.1 44 839-882 29-72 (161)
419 PF01535 PPR: PPR repeat; Int 70.9 4.5 9.7E-05 26.2 2.6 28 42-69 2-29 (31)
420 TIGR03504 FimV_Cterm FimV C-te 70.1 5 0.00011 29.1 2.7 25 718-742 3-27 (44)
421 PF10516 SHNi-TPR: SHNi-TPR; 69.7 9.9 0.00021 26.6 4.0 28 130-157 3-30 (38)
422 KOG0687 26S proteasome regulat 69.4 1E+02 0.0022 33.2 13.0 100 127-226 103-210 (393)
423 KOG4691 Uncharacterized conser 69.0 84 0.0018 30.6 11.2 51 875-927 121-171 (227)
424 COG3947 Response regulator con 68.5 17 0.00036 38.2 7.1 58 382-439 285-343 (361)
425 TIGR03504 FimV_Cterm FimV C-te 68.5 9.7 0.00021 27.6 4.0 26 44-69 3-28 (44)
426 KOG0686 COP9 signalosome, subu 68.5 1.6E+02 0.0035 32.8 14.6 100 377-476 151-257 (466)
427 KOG4364 Chromatin assembly fac 68.4 53 0.0012 38.4 11.6 11 1036-1046 502-512 (811)
428 PRK09174 F0F1 ATP synthase sub 68.1 1.1E+02 0.0023 31.2 12.9 41 843-883 80-120 (204)
429 KOG4814 Uncharacterized conser 67.2 2.7E+02 0.0058 33.1 34.7 86 106-191 366-457 (872)
430 PF12739 TRAPPC-Trs85: ER-Golg 66.8 1.8E+02 0.0039 33.5 16.2 23 312-334 377-399 (414)
431 PF05890 Ebp2: Eukaryotic rRNA 66.7 1.2E+02 0.0025 32.5 13.2 9 921-929 169-177 (271)
432 PF10373 EST1_DNA_bind: Est1 D 66.7 1.9E+02 0.004 31.0 16.8 62 660-726 1-62 (278)
433 smart00386 HAT HAT (Half-A-TPR 65.8 15 0.00033 23.9 4.5 28 212-239 2-29 (33)
434 COG3947 Response regulator con 65.4 28 0.00061 36.6 8.0 60 344-403 281-340 (361)
435 KOG4279 Serine/threonine prote 64.9 55 0.0012 38.9 11.0 101 127-228 200-318 (1226)
436 PF00244 14-3-3: 14-3-3 protei 64.7 1.9E+02 0.004 30.3 16.6 60 200-261 4-64 (236)
437 PF10037 MRP-S27: Mitochondria 64.6 2.6E+02 0.0057 32.1 23.9 91 567-671 74-168 (429)
438 KOG2114 Vacuolar assembly/sort 64.6 3.4E+02 0.0075 33.4 30.0 68 382-452 711-779 (933)
439 KOG0276 Vesicle coat complex C 64.4 96 0.0021 36.3 12.5 84 126-223 664-747 (794)
440 COG4455 ImpE Protein of avirul 64.4 48 0.001 33.4 9.0 59 137-195 10-68 (273)
441 KOG4279 Serine/threonine prote 63.8 1.3E+02 0.0028 36.1 13.5 78 607-689 257-334 (1226)
442 TIGR00756 PPR pentatricopeptid 63.1 7.1 0.00015 26.0 2.4 28 42-69 2-29 (35)
443 PF01535 PPR: PPR repeat; Int 62.9 10 0.00022 24.5 3.1 26 717-742 3-28 (31)
444 KOG2063 Vacuolar assembly/sort 62.8 4E+02 0.0088 33.6 21.5 21 47-67 353-373 (877)
445 PF12739 TRAPPC-Trs85: ER-Golg 62.7 2.2E+02 0.0047 32.8 15.8 174 42-228 210-401 (414)
446 KOG3054 Uncharacterized conser 62.3 76 0.0016 32.2 9.9 6 865-870 122-127 (299)
447 smart00386 HAT HAT (Half-A-TPR 61.9 19 0.00041 23.4 4.4 27 143-169 2-28 (33)
448 smart00299 CLH Clathrin heavy 61.5 1.4E+02 0.0031 27.9 14.3 38 351-388 16-53 (140)
449 PF13812 PPR_3: Pentatricopept 61.4 7.2 0.00016 25.9 2.2 29 41-69 2-30 (34)
450 PRK06231 F0F1 ATP synthase sub 61.0 1.7E+02 0.0038 29.8 12.9 41 843-883 75-115 (205)
451 COG5536 BET4 Protein prenyltra 61.0 1.1E+02 0.0024 32.2 11.2 168 107-275 45-234 (328)
452 KOG3677 RNA polymerase I-assoc 60.9 1.1E+02 0.0025 33.9 11.8 64 307-370 237-300 (525)
453 KOG4814 Uncharacterized conser 60.8 3.5E+02 0.0076 32.2 31.4 87 655-746 368-460 (872)
454 PF09477 Type_III_YscG: Bacter 60.2 1.2E+02 0.0027 26.8 11.4 78 140-223 18-95 (116)
455 TIGR00756 PPR pentatricopeptid 60.0 18 0.00039 23.9 4.1 26 717-742 3-28 (35)
456 PF06098 Radial_spoke_3: Radia 59.9 1.4E+02 0.0031 32.0 12.4 7 856-862 142-148 (291)
457 PF07946 DUF1682: Protein of u 59.9 47 0.001 36.6 9.3 13 818-830 236-248 (321)
458 KOG0686 COP9 signalosome, subu 59.4 44 0.00095 37.0 8.5 110 308-419 153-280 (466)
459 KOG2393 Transcription initiati 59.4 14 0.00031 41.9 5.0 11 1021-1031 336-346 (555)
460 KOG2891 Surface glycoprotein [ 58.7 61 0.0013 33.2 8.8 6 659-664 180-185 (445)
461 PRK08475 F0F1 ATP synthase sub 58.2 1.9E+02 0.0041 28.3 12.8 41 843-883 49-89 (167)
462 PLN03086 PRLI-interacting fact 58.2 58 0.0013 38.4 9.9 16 871-886 21-36 (567)
463 PF14863 Alkyl_sulf_dimr: Alky 58.0 29 0.00063 32.8 6.2 51 126-176 68-118 (141)
464 PRK13454 F0F1 ATP synthase sub 57.8 2.1E+02 0.0045 28.6 13.1 39 844-882 59-97 (181)
465 KOG0546 HSP90 co-chaperone CPR 57.6 16 0.00034 39.6 4.8 77 343-419 276-352 (372)
466 CHL00118 atpG ATP synthase CF0 57.0 1.9E+02 0.0041 27.9 13.0 39 844-882 50-88 (156)
467 cd00280 TRFH Telomeric Repeat 56.3 1.4E+02 0.003 29.5 10.3 126 40-172 13-154 (200)
468 PF10373 EST1_DNA_bind: Est1 D 54.8 27 0.00058 37.7 6.5 62 544-605 1-62 (278)
469 PRK14472 F0F1 ATP synthase sub 54.5 2.3E+02 0.0049 28.0 13.0 41 843-883 45-85 (175)
470 PF09670 Cas_Cas02710: CRISPR- 54.2 1.7E+02 0.0038 33.1 12.9 61 166-226 135-198 (379)
471 PF12921 ATP13: Mitochondrial 54.1 1.2E+02 0.0025 28.2 9.5 81 677-757 4-95 (126)
472 KOG3756 Pinin (desmosome-assoc 53.6 2.4E+02 0.0052 30.1 12.2 38 889-927 184-221 (340)
473 KOG0066 eIF2-interacting prote 53.1 10 0.00022 41.8 2.7 21 1011-1031 90-110 (807)
474 PF10037 MRP-S27: Mitochondria 53.0 1.8E+02 0.004 33.3 12.6 102 672-776 63-164 (429)
475 PF13812 PPR_3: Pentatricopept 52.8 21 0.00046 23.6 3.4 27 677-703 3-29 (34)
476 cd02680 MIT_calpain7_2 MIT: do 52.6 95 0.0021 25.7 7.5 39 691-749 3-41 (75)
477 KOG4521 Nuclear pore complex, 52.1 6.3E+02 0.014 32.5 18.9 128 308-439 986-1133(1480)
478 PF13025 DUF3886: Protein of u 52.1 56 0.0012 26.4 5.9 21 877-897 22-42 (70)
479 KOG4364 Chromatin assembly fac 52.0 99 0.0021 36.4 10.1 11 917-927 365-375 (811)
480 KOG4422 Uncharacterized conser 52.0 4E+02 0.0086 30.1 35.9 68 524-591 521-593 (625)
481 KOG0546 HSP90 co-chaperone CPR 51.9 17 0.00038 39.3 4.0 127 452-602 226-352 (372)
482 COG3064 TolA Membrane protein 51.8 2E+02 0.0044 30.6 11.3 6 1020-1025 258-263 (387)
483 KOG0276 Vesicle coat complex C 51.8 1.4E+02 0.0031 35.0 11.2 133 306-475 615-748 (794)
484 PLN03086 PRLI-interacting fact 51.4 1.1E+02 0.0023 36.4 10.6 20 867-886 10-29 (567)
485 KOG4661 Hsp27-ERE-TATA-binding 50.9 99 0.0021 35.3 9.7 83 856-939 594-677 (940)
486 KOG3654 Uncharacterized CH dom 50.8 98 0.0021 34.9 9.4 9 887-895 423-431 (708)
487 PF09670 Cas_Cas02710: CRISPR- 50.7 2.1E+02 0.0045 32.5 12.8 62 527-588 133-198 (379)
488 PRK14471 F0F1 ATP synthase sub 50.0 2.5E+02 0.0055 27.3 13.2 92 838-929 30-122 (164)
489 KOG2141 Protein involved in hi 49.3 11 0.00024 44.4 2.3 107 942-1082 172-285 (822)
490 KOG1497 COP9 signalosome, subu 49.3 2.3E+02 0.005 30.6 11.4 104 40-156 103-212 (399)
491 COG4455 ImpE Protein of avirul 49.1 76 0.0017 32.1 7.6 76 527-602 3-78 (273)
492 PF10952 DUF2753: Protein of u 49.1 1E+02 0.0022 28.0 7.6 63 717-779 4-79 (140)
493 PF09205 DUF1955: Domain of un 48.6 2.3E+02 0.005 26.4 12.7 112 655-778 16-148 (161)
494 PRK15490 Vi polysaccharide bio 47.8 78 0.0017 37.5 8.8 82 105-188 19-100 (578)
495 cd09243 BRO1_Brox_like Protein 47.5 1.2E+02 0.0026 33.8 10.0 76 785-863 110-192 (353)
496 PRK14474 F0F1 ATP synthase sub 47.5 3.2E+02 0.007 28.8 12.7 88 838-925 27-116 (250)
497 TIGR03321 alt_F1F0_F0_B altern 47.4 3.4E+02 0.0074 28.6 13.0 92 838-929 27-123 (246)
498 PF07946 DUF1682: Protein of u 47.4 1E+02 0.0022 34.0 9.5 66 857-922 254-319 (321)
499 COG5187 RPN7 26S proteasome re 47.1 3.8E+02 0.0083 28.5 13.7 176 392-604 53-237 (412)
500 smart00299 CLH Clathrin heavy 46.9 2.5E+02 0.0054 26.3 14.4 127 348-540 13-140 (140)
No 1
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-120 Score=1019.02 Aligned_cols=1000 Identities=40% Similarity=0.651 Sum_probs=897.4
Q ss_pred CceeeeccCCCCceEEEeCCCCCCChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001392 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1088)
Q Consensus 1 ~~~~~ip~~~~~e~v~i~~~~lp~~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~ 80 (1088)
|+||+|||++++|||+||+++|| |++||++||++|.+++++|+.+|.+||++|+.++|+.||+.++. +.+..|.++..
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~-~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLI-DANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhh-cccchhcchHH
Confidence 57999999999999999999999 99999999999999999999999999999999999999999984 34556889999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~~~ 158 (1088)
+.+.+++.||.+|..+|.....+..++..+..|+.+|+.+.+++......++..+..++..|.. +.|...|..+++..
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988888999999999999999999999999999999999988875 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|+|+.++++.|++.+..|+|..|+.+|++++..+|...+.+++++|.|++++|+.+.|+..|.++++++|.++.++..||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1088)
.+.+...+...+..++..+.+++..+|.+|.+++.|+..|+..|+|..+..+...++..+...+..+++++++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999899999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC----CHHH
Q 001392 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1088)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1088)
|+|++|..+|..+++. .+..++.+++++|++|+..|+++.|+.+|+++++..|++.+++..||.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999886 6789
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1088)
Q Consensus 395 A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a 474 (1088)
|..++.+++...|.+..+|+.++.++..++...++.+|..|+.++...+..+++++++++|..++..|++.+|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999888888889999999999988888899999999999999999999999999999
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH
Q 001392 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1088)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1088)
+....... ... .....+.++.||+|+++...+++..|...|..+++.
T Consensus 479 ~~~~~~~~--------------------------------n~d-e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVA--------------------------------NKD-EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhc--------------------------------Ccc-ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 87411000 000 002235778999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHH
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 633 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~a~~~ 633 (1088)
+|.++++|+++|.+....++..+|..+++.++..+..+|.+|..+|.+|++...|..|...|..++..... +|.|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988885443 59999999
Q ss_pred hhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001392 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1088)
Q Consensus 634 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1088)
|||+ |+...+...++++.+.+.+++|+++|.++|+.+|.|.+|.+|+|++++..|++.+|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9998 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
+++|+|+||||+.+|+|..||++|+.|+++|...+++.++.+||++|+..|++.+|+.++.+|+++.|.++.+.||+|++
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001392 794 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER-EEQQ 872 (1088)
Q Consensus 794 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~e~~ 872 (1088)
+++.+..+++..++|+++|..++.+|+.|+++|.+|+..++. +|+++.+.+++++|+++++++..|+.++++ .|++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998743 899999999999999999999999987765 4445
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCchhhhhhccCCCCccccc
Q 001392 873 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH 949 (1088)
Q Consensus 873 ~~~k~---e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1088)
.++|+ +.+++.++.+|++|++||++..++..+++++|.++..+.++.|.+..+.|+.+++..+++ .+++ .
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~---~~~~----~ 909 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKR---GDDS----D 909 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCC---CCcC----c
Confidence 54555 456666778889999999999999999998988888888889999999999998886443 1111 2
Q ss_pred cccccccCCcccccccCcCcc-ccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCCC
Q 001392 950 SEKRRRKGGKRRKKDKSSRSH-YETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAAAGLEDS 1026 (1088)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 1026 (1088)
+.-++|||||||||+++++.+ +..+++|.+.+++...+........+++++.+. ...+-+++++.++ ..+..+++++
T Consensus 910 ~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~~ 989 (1018)
T KOG2002|consen 910 SDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREASEESDRP 989 (1018)
T ss_pred ccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchhhccCCc
Confidence 444555555555553333333 344445667777777777776666665333222 2233344445555 8888999887
Q ss_pred -CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001392 1027 -DVDDEMAPSITAARRRRALSESDDDEPF 1054 (1088)
Q Consensus 1027 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1088)
|+|.|..+++. .||++++|.|||..++
T Consensus 990 ~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 990 IESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred cccccccCcccc-cccchhhccccccccc
Confidence 77777888888 9999999999987653
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-51 Score=531.81 Aligned_cols=699 Identities=21% Similarity=0.239 Sum_probs=514.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHH
Q 001392 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (1088)
Q Consensus 32 ~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~ 111 (1088)
++...|.....|+.+|..|+.+|++++|+.+++.++...+ ....++..++.++...|...
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~----------- 210 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLGNIE----------- 210 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHhcCCHH-----------
Confidence 4445666777888888888888888888888888765433 22345666777777766655
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
+|+..|.+++..+|.++.+++.++.+++..|++++|...|+.++...|+++.+++..|.+++..|++++|+..|++++..
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
+|.. ...++.+|.++..+|++++|...|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 291 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 366 (899)
T TIGR02917 291 APEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAAL 366 (899)
T ss_pred CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHH
Confidence 6665 33455556666666666666666666666666666555556665555555 5555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---------------
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--------------- 336 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------- 336 (1088)
..++.++...|++++|..++..++... |.....+..+|.++...|++++|+..|..++...+
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 555555555555555555555555332 33344444445444444444444444444332110
Q ss_pred ----------------CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 337 ----------------KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 337 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
..|.....+..+|.++...|++++|+.+|.+++..+|.+..++..++.++...|++++|+..|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455667788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001392 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1088)
Q Consensus 401 k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~ 479 (1088)
+++...|.+..++..++.++ ..|++++|+..+.+++...+. ....+..++.++...|++++|+..+++++...+
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888 888888888888888776433 356677788888888888888888888776432
Q ss_pred hhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc
Q 001392 480 WLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555 (1088)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 555 (1088)
... ............ ......+..+.. ..|.++.++..++.++...|++++|...|++++..+
T Consensus 599 ~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 599 DSP-------EAWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 110 000000000000 122233333322 456778888899999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhh
Q 001392 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1088)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg 635 (1088)
|++..++..++.++...|++++|+.+++.+....|.++.++..+|.++...|++++|+..|.+++...|.. ..+..++
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~ 743 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLH 743 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887764 4555677
Q ss_pred hHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchh
Q 001392 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1088)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1088)
.+ |... |++++|...+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| +++.
T Consensus 744 ~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~ 805 (899)
T TIGR02917 744 RA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAV 805 (899)
T ss_pred HH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHH
Confidence 77 7777 8999999999999999999999999999999999999999999999999887 6788
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 795 (1088)
++.++|+++...|+ .+|+.+|++++.. .+.++.++..+|.+++..|++++|+.+|+++++.+|.++.++++++.++.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 99999999999999 8899999999987 56678888999999999999999999999999999999999999998765
Q ss_pred HHH
Q 001392 796 KFS 798 (1088)
Q Consensus 796 ~~~ 798 (1088)
+.+
T Consensus 883 ~~g 885 (899)
T TIGR02917 883 ATG 885 (899)
T ss_pred HcC
Confidence 544
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-50 Score=523.06 Aligned_cols=735 Identities=20% Similarity=0.212 Sum_probs=586.3
Q ss_pred CCCCChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh
Q 001392 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE 100 (1088)
Q Consensus 21 ~lp~~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~ 100 (1088)
+.......+..++...|.....|+.+|.+|+.+|++++|+..+++++...+.. ...+..++.+|...|...
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK---------NQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------hhhHHHHHHHHHHCCCHH
Confidence 44555667778888899999999999999999999999999999987654321 123333444444443322
Q ss_pred hhh------------------------hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 101 TKQ------------------------REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE 156 (1088)
Q Consensus 101 ~~~------------------------~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 156 (1088)
... -.+.+++++|...|++++..+|.++.+++.+|.+++..|++++|+..+++++.
T Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 100 01234456899999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
.+|.+..++..+|.+++..|++++|+..|++++..+|.+ +.+++.++.++...|++++|...+.++++..|+++.+++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL 266 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 999999999999999999999999999999999999988 6778889999999999999999999999999998888888
Q ss_pred HHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 001392 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316 (1088)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~ 316 (1088)
.+.++...|+ +++|+..|.+++..+|.+..++..++.+++..|+++.|...+..++... |....++..++.++.
T Consensus 267 ~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~ 340 (899)
T TIGR02917 267 KALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASIQL 340 (899)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Confidence 8888888888 9999999999999999988888888999999999999999999888654 555678888899999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 001392 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (1088)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (1088)
..|++++|+..+..++. ..|.....+..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++|+
T Consensus 341 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 341 RLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Confidence 99999999999998886 556677788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001392 397 ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475 (1088)
Q Consensus 397 ~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al 475 (1088)
..|.+++...|........++..+ ..|++++|+..+.++....+. .+.++..+|.++...|++++|+.+|.+++
T Consensus 418 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-----NASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988888888888888 889999999888887764332 46788889999999999999999999998
Q ss_pred hcchhhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 001392 476 GDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1088)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1088)
...+... ............ ......+..+.. ..|.+..++..++.++...|++++|..++.++
T Consensus 493 ~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 493 SIEPDFF-------PAAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred hhCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7543111 000000000000 122233333332 45667777888888888888888888888888
Q ss_pred HHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHH
Q 001392 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631 (1088)
Q Consensus 552 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~ 631 (1088)
+..+|.....+..++.++...|++++|+.+++.++...|.++.+|..+|.++...|++++|+..|++++...|. +..++
T Consensus 560 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 638 (899)
T TIGR02917 560 AELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALAL 638 (899)
T ss_pred HHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888777665 55666
Q ss_pred HHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC
Q 001392 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711 (1088)
Q Consensus 632 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~ 711 (1088)
..++.+ |... |++++|+.+|++++..+|++..++..++.++...|++++|+.++..+....|
T Consensus 639 ~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 700 (899)
T TIGR02917 639 LLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP----- 700 (899)
T ss_pred HHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----
Confidence 677777 7776 7888888888888888888888888888888888888888888888877776
Q ss_pred CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHH
Q 001392 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1088)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla 791 (1088)
..+.++..+|.+++..|++++|+..|+.++...+. ..++..++.++...|++.+|...+++++...|+++.+++++|
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS---SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56777888888888888888888888888876432 266777888888888888888888888888888888888777
Q ss_pred HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001392 792 VAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 792 ~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
.++... +..+.|..+|..+....
T Consensus 778 ~~~~~~-------------------g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 778 ELYLAQ-------------------KDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHC-------------------cCHHHHHHHHHHHHHhC
Confidence 765443 35788999999987654
No 4
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-45 Score=414.28 Aligned_cols=582 Identities=17% Similarity=0.166 Sum_probs=510.4
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1088)
++.|...|.-+++..|.+..+++++|.+.+..|+|..|+.+|..++..+|.. +...+++|.|+.+.|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 6689999999999999999999999999999999999999999999999976 567789999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 189 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
++++|.+ ..++..+|.+-.... .+..+...+.++...+|.||.++..|+..++..|+ +..+..+...++...-
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 677777777666554 57889999999999999999999999999999999 9999999999988764
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001392 266 YC---AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1088)
Q Consensus 266 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1088)
.. ...++.+|..|..+|+|++|..+|..++...+.+ ..-.++.+|..|...|+++.|...|.+++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 43 4559999999999999999999999999765443 356789999999999999999999999998 667888
Q ss_pred hhHhhHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 001392 343 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 413 (1088)
Q Consensus 343 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~-----~p~~~~~~ 413 (1088)
.+...+|.+|...+ ..+.|..++.+++...|.+..+|..++.+|....-+ .++.+|.+++.. .+--+..+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88999999999886 678899999999999999999999999998776544 449999888743 35568899
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccc
Q 001392 414 IDLGELL-ISSDTGAALDAFKTARTLLKK-A----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (1088)
Q Consensus 414 ~~la~l~-~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 487 (1088)
.++|.++ ..|++..|...|..+...... . +......+.++++.++-..+++..|...|...+.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 999999999999999987331 1 1123356789999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 001392 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567 (1088)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 567 (1088)
..|..+..+..+|.+....++..+|..++..++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 578899999999988888899999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHCC--CChhHHHhhhhhhhcc------------cchHHHHHHHHHhhhcCCCCChHHHHH
Q 001392 568 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 633 (1088)
Q Consensus 568 ~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~d~~a~~~ 633 (1088)
++.....+..|..-|...++.-. .++.+...||++++.. +.+.+|++.|.+++...|. +.|+-..
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999987777665433 3455667788877653 4578999999999999988 8899899
Q ss_pred hhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001392 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1088)
Q Consensus 634 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1088)
+|.+ +... |++..|..+|.++..--..++.+|.++|.||..+|+|..|+++|+.++...-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 9988 7777 999999999999998887888999999999999999999999999999987322 68
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 001392 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763 (1088)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~ 763 (1088)
+.++..||.+++..|.+.+|......++.. .|.++.+.+++|.+..+.
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 999999999999999999999999999998 567788888888877653
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-42 Score=442.83 Aligned_cols=652 Identities=14% Similarity=0.119 Sum_probs=532.4
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001392 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1088)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~ 116 (1088)
..+.+..+..++....+++.+.|.+.|.+++..+| +.+.++..++.+++..|+.. +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 45677889999999999999999999999887654 34667888888888888877 99999
Q ss_pred HHHHhhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001392 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1088)
++++++++|+++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|++.
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 66788899999999999999999999888754 2323333344569999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-------------
Q 001392 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1088)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1088)
+|+..|++++..+|.+ +.+++.+|.++...|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987655432221111000001111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 001392 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1088)
Q Consensus 247 ----~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1088)
...+..|...+.+.....++.......++..+...|++++|+..|++++... |..+.++..+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 0113344444444333322222233456888999999999999999999764 667899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001392 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1088)
+|+.+|.+++...+..+.. ......+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999854332221 11234568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCCHHHH
Q 001392 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESA 467 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A 467 (1088)
+++|+.+|++++..+|.+..++..++.++..+++++|+.+++.+....+.. ........+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999995568899998887654332111 0011134567789999999999999
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHH
Q 001392 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (1088)
Q Consensus 468 ~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (1088)
+..|++++. ..|.++.+++.+|.+|...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 5678899999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC----------hhHHHhhhhhhhcccchHHHHHHHH
Q 001392 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1088)
|++++..+|+++..++.++.++...+++++|+.+++++....... ......++..+...|++++|+.+++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998754322111 1123456788899999999999987
Q ss_pred HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHH
Q 001392 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (1088)
Q Consensus 618 ~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 697 (1088)
..|. +...++.+|.+ |... |++++|+..|++++..+|.++.++.+++.++...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444 55667889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhhccHHHHHHHH
Q 001392 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 773 (1088)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~----~~~~l~~La~~~~~~g~~~~A~~~l 773 (1088)
|++++...| +++.++..+|.++..+|++++|+.+|+.++...+..+ ++.++..+|+++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998876 7788999999999999999999999999998754322 2456777899999999999999999
Q ss_pred HHHHH
Q 001392 774 LRAIH 778 (1088)
Q Consensus 774 ~~al~ 778 (1088)
++++.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99985
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.3e-42 Score=441.26 Aligned_cols=622 Identities=17% Similarity=0.088 Sum_probs=505.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
...+...+.++...++.+ .|...+.+++.++|+++.++..++.+++..|++++|...+++++..+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 445666777777766655 899999999999999999999999999999999999999999999999998
Q ss_pred HHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 163 ~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
.+. +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678899999999999999999999988874322233344444569999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----
Q 001392 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (1088)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---- 302 (1088)
+|+++.++..+|.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876544322211111111112222233333332222211111
Q ss_pred -------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
........+|.++...|++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1112223568899999999999999999998 567888999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001392 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1088)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~ 434 (1088)
+.+|++.. ....+|.++...|++++|+..|++++..+|.++.++..+|.++ ..|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99987642 2234578889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccC
Q 001392 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (1088)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1088)
++...|. ...++..++.++. .+++++|+.++..+....+. .....
T Consensus 411 aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-----------------------~~~~~------ 455 (1157)
T PRK11447 411 ALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-----------------------SIDDI------ 455 (1157)
T ss_pred HHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-----------------------HHHHH------
Confidence 9988554 3677888888875 46789999888765431100 00000
Q ss_pred CCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh
Q 001392 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1088)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 594 (1088)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|++++|+..|++++..+|.++.
T Consensus 456 -----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 456 -----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred -----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 001123457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH---------HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~---------a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
+++.++.++...+++.+|+..++++.......... ..+.+++. +... |++++|+.+++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~ 597 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH
Confidence 99999999999999999999999865432221111 12334555 5555 89999998877
Q ss_pred HHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
.+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|...|++.+|+..|+.++..
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 6899999999999999999999999999999999998 78999999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 746 ~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
.+.++.++..+|.++...|++++|..+|++++...|.++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 5566888999999999999999999999999999887654
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-44 Score=379.31 Aligned_cols=447 Identities=20% Similarity=0.275 Sum_probs=429.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
-|+|.+|.++.+.....||.+...+..++.++++..+++.....-..+++.+|....++-.+|.++..+|+++.|+.+|+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
.++++.|+. .+.|+++|.|+...|+.+.|..+|..+++++|....+...+|.+....|. ..+|..+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 88899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
...+|..||.++...|+...|+..|++++... |....+|+++|.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 99999999999999999999999999999664 77779999999999999999999999999998 6789999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~ 425 (1088)
++|.+|+.+|..+-||.+|++++...|+.+.++.+||.++...|+..+|..+|.+++.+.|+.+.+..+||.++ +.|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001392 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1088)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1088)
+.|..+|.+++...|.. ....+++|.+|-+.|++++|+.+|++++.
T Consensus 371 e~A~~ly~~al~v~p~~-----aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEF-----AAAHNNLASIYKQQGNLDDAIMCYKEALR----------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhh-----hhhhhhHHHHHHhcccHHHHHHHHHHHHh-----------------------------
Confidence 99999999999998774 78899999999999999999999999998
Q ss_pred hhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 585 (1088)
+.|..+.++.++|.+|..+|+...|+..|.+++..+|..++++.+||.+|...|+..+|+..|+.+
T Consensus 417 --------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 417 --------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred --------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCChhHHHhhhhhhhcccchHH
Q 001392 586 LKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
+++.|+.++++.++..++.-..+|..
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999888766655544
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-43 Score=375.32 Aligned_cols=462 Identities=20% Similarity=0.255 Sum_probs=343.3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1088)
+......+.++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ..++-++|
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHH
Confidence 33444466667777777777777777777777777777777777777777777777777767777777766 56666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
.++...|++..|+..|+.++++.|++.++|.++|.++...|+ ...|..+|..+++++|...
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~---------------- 184 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLY---------------- 184 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchh----------------
Confidence 777777777777777777777777777777777777776666 6666666666666665443
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1088)
.+...+|..+...|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..
T Consensus 185 ---------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 185 ---------------------CARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred ---------------------hhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHH
Confidence 3334456666666666666666666665 4455555666666666666666666666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
|+++++++|+...+|++||.+|...+.++.|+..|.+++.+.|++.
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---------------------------------- 286 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---------------------------------- 286 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch----------------------------------
Confidence 6666666666666666666666666666666666666655555544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc
Q 001392 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1088)
.++.++|.+|+..|..+.|+..|++++. ..|..
T Consensus 287 ----~a~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F 319 (966)
T KOG4626|consen 287 ----VAHGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNF 319 (966)
T ss_pred ----hhccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCc
Confidence 4555566666666777777777777776 56777
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhh
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~ 604 (1088)
+.++.++|.++...|+..+|..+|.+++..+|+++++.++||.++..+|.++.|..+|.+++..+|....++.++|.+|.
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Q 001392 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 684 (1088)
++|++++|+..|+.++++.|. -..++..+|+. |-.. |+...|++.|.+++..+|....+..+||.+
T Consensus 400 qqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hcccHHHHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 888888888888888888776 56677788888 8888 999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCH
Q 001392 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 730 (1088)
Q Consensus 685 l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~ 730 (1088)
|...|+..+|+..|+.++...| +.++++.|+++|+.--.++
T Consensus 466 ~kDsGni~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hhccCCcHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999998 8899999999988665443
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=9.3e-37 Score=372.82 Aligned_cols=663 Identities=11% Similarity=0.004 Sum_probs=515.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
....+..|..+...|++++|+..|+.++..+|+ ...++..|+.+|+.+|+.. +|+..+++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------n~~~~~~LA~~yl~~g~~~-----------~A~~~~~k 103 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD---------NIPLTLYLAEAYRHFGHDD-----------RARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHH-----------HHHHHHHH
Confidence 347788888888889999999999999877653 3667899999999999877 89999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHh
Q 001392 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~ 191 (1088)
+++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.+ |.+.+...+++. .+.+..
T Consensus 104 Av~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~ 177 (987)
T PRK09782 104 QLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA 177 (987)
T ss_pred HHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC
Confidence 999999988888877666 999999999999999999999999999998 555555555554 333333
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
+|.. ..+.+.++.+|..+|+++.|+..+.++++..|.+...+..|+.+|... ++ +.++.++...++ .++.+
T Consensus 178 ~~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk---~d~~l 249 (987)
T PRK09782 178 SPEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF---TDPQS 249 (987)
T ss_pred CCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc---cCHHH
Confidence 3333 556777799999999999999999999999999999999999988873 43 666666554322 78889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
+..++..|...|+.+.|..++...-......|......+.+++..... ..|...|.+= ..+....+...++.
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~ 321 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHH
Confidence 999999999999999999999987766666666666677766654332 2233333331 22445556667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
.+...+.+..+..+ +...|.++. ...........+.+.++...+..+.+..|.+...+..++.+. ..|+..+|.
T Consensus 322 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 322 VLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 99999999955533 455676664 222222334557888999999999998899999999999999 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcc--hhhhhcccccchhhhhhhhhHHHhhh
Q 001392 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGDG--IWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~l~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
..|+.+... +. ....+..+...++.+|...+. ...+..+...+-... .|..-... ....
T Consensus 397 ~~~~~~~~~-~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~ 460 (987)
T PRK09782 397 DLLLQRYPF-QG-DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG--------------IADN 460 (987)
T ss_pred HHHHHhcCC-Cc-ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh--------------hhhh
Confidence 999998875 22 122245677789999998877 444433321111100 00000000 0000
Q ss_pred hhhhhhhccCCCCcCCCCc--chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
...+.. .+...|. .+.+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++|+..|
T Consensus 461 ~~~~~~------al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 461 CPAIVR------LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred HHHHHH------hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHH
Confidence 011111 1114466 88999999999998 899999999999999999854 4666777788999999999999
Q ss_pred HHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHH
Q 001392 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662 (1088)
Q Consensus 583 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 662 (1088)
++++...|. ...+..+|.++...|++.+|...|.+++...|.. ......++.. .... |++++|+.
T Consensus 533 rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~-l~~~------------Gr~~eAl~ 597 (987)
T PRK09782 533 QKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQ-RYIP------------GQPELALN 597 (987)
T ss_pred HHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHH-HHhC------------CCHHHHHH
Confidence 998777555 4567889999999999999999999999987663 3333333333 3334 89999999
Q ss_pred HHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001392 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742 (1088)
Q Consensus 663 ~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~ 742 (1088)
.|++++..+|+ +.++.++|.++.+.|++++|+..|++++...| +++.++.++|.++...|++++|+..|++++.
T Consensus 598 ~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 598 DLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999996 89999999999999999999999999999998 7899999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHH
Q 001392 743 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (1088)
Q Consensus 743 ~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~ 796 (1088)
. .|.++.+++.+|.++...|++++|+..|++++.+.|++..+.+-++.+.+.
T Consensus 672 l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 672 G--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 8 677899999999999999999999999999999999999998888876443
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=353.11 Aligned_cols=650 Identities=12% Similarity=0.020 Sum_probs=504.8
Q ss_pred ChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhh
Q 001392 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR 104 (1088)
Q Consensus 25 ~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~ 104 (1088)
--..+..+|...|.+..+++.+|.+|..+|++++|+..+++++..++.. ...+..|+.+ +
T Consensus 63 A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n---------~~~~~~La~i----~------- 122 (987)
T PRK09782 63 AIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD---------ARLERSLAAI----P------- 122 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHh----c-------
Confidence 3456677788899999999999999999999999999999998876532 2233334443 3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
++.+|+..|++++..+|.+..+++.++.. |.+.+....|+. .+.+..+|......+.++.+|..+|
T Consensus 123 ----~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 123 ----VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ----cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 34489999999999999999999999998 666655555554 3333334445556777799999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHH
Q 001392 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~ 255 (1088)
+|++|+..+.++++..|.+ ...+..++.+|.. +++ +.+..++...++ .++.++..++..+...|+ .++|..
T Consensus 197 dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~~A~~ 268 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KARLQH 268 (987)
T ss_pred CHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HHHHHH
Confidence 9999999999999999999 6668889999888 577 888888765333 788999999999999999 666665
Q ss_pred HHHH---HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 256 KMQR---AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 256 ~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+.+ +...+|.+..-++.++...... ..+..-+.. . ..+.....+..+...+...++++-+..+ +
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 336 (987)
T PRK09782 269 YLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTV--Q---FADNRQYVVGATLPVLLKEGQYDAAQKL----L 336 (987)
T ss_pred HHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhh--h---hHHHHHHHHHHHHHHHHhccHHHHHHHH----h
Confidence 5554 4444566666666666543321 111111111 0 0122224455567888888988855544 1
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---C
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---D 409 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~---~ 409 (1088)
. ..|.... ...........+.+.++...+...++..|.+...+..++....+.|+..+|...|+.++...++ +
T Consensus 337 ~---~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 337 A---TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred c---CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 1 1233322 2222222334578888888888888888999999999999999999999999999999875322 2
Q ss_pred HHHHHHHHHHH-hcCC---HHHH----------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001392 410 AQAFIDLGELL-ISSD---TGAA----------------------LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1088)
Q Consensus 410 ~~~~~~la~l~-~~~~---~~~A----------------------~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (1088)
......++.+| .... ...+ ...+..+....+..+....+.+++++|.++.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 33444777777 4433 2222 33334444444332211267899999999988 89
Q ss_pred HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHH
Q 001392 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 543 (1088)
Q Consensus 464 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 543 (1088)
+.+|+..|.+++.. .|.. .....+|.++...|++++
T Consensus 492 ~~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 492 PGVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred cHHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCHHH
Confidence 99999999999873 3433 236667788889999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 544 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 544 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
|+..|++++...|. ...++.+|.++...|++.+|..++.+++..+|.+...+..++......|++++|...|++++...
T Consensus 528 Ai~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 528 ALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 99999998776555 45678899999999999999999999999999998888777777777899999999999999998
Q ss_pred CCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHH
Q 001392 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703 (1088)
Q Consensus 624 ~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~ 703 (1088)
|. ..++..+|.+ +... |++++|+..|++++..+|+++.+++++|.++...|++++|+.+|+++++
T Consensus 607 P~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 607 PS--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred CC--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 85 6677888988 8888 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 704 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
..| +++.+++++|.++..+|++++|+..|++++.. .|.++.+....|.+.....++..|.+.+.++..++|..
T Consensus 672 l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 672 GLP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred hCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 998 88999999999999999999999999999998 67778999999999999999999999999999999977
Q ss_pred hhHHhHHHHH
Q 001392 784 YTLRFDAGVA 793 (1088)
Q Consensus 784 ~~~~~nla~~ 793 (1088)
. +...++-+
T Consensus 745 ~-a~~~~g~~ 753 (987)
T PRK09782 745 S-IGLRSGAM 753 (987)
T ss_pred h-hccccchH
Confidence 6 55555443
No 11
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-32 Score=340.84 Aligned_cols=671 Identities=13% Similarity=0.055 Sum_probs=549.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHH
Q 001392 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1088)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1088)
..+.+...+..+...|++.|++.+|..+|..+......+ ....+..+...+...+.. ..|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~-----------~~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAV-----------EEGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCH-----------HHHH
Confidence 345667789999999999999999999999986543211 112334444444444443 3788
Q ss_pred HHHHHHhhcCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 115 ~~~~~a~~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
.++..+++..+. +......+...|.+.|+++.|...|+.+. +.+..+|..+...|.+.|++++|+.+|.++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888888877653 34455667778899999999999999874 45778999999999999999999999999987542
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
.....++..+...+...+++..+...+..++.... .+...+..|...|.+.|+ ++.|...|.+.. ..+...|+
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n 257 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWN 257 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhH
Confidence 22245566677778888999999999998887643 256677888889999998 999999999754 34668899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.+...|...|++.+|..+|..+.... ...+..++..+..++...|+.+.|.+++..+.+. .......++..+...|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMY 333 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHH
Confidence 99999999999999999999998653 2334577888889999999999999999999864 3344567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
.+.|++++|...|+.+.. .+...|..+...|.+.|++++|+.+|.++.... |+.. .+..+...+ ..|+++.|.
T Consensus 334 ~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 999999999999998743 467789999999999999999999999987654 6554 444444566 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001392 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
.++..+.+. +...+..+++.+...|.+.|++++|...|.++..
T Consensus 410 ~l~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 410 KLHELAERK----GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred HHHHHHHHh----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 999887764 4455678999999999999999999999987643
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
.+..+|..+...|...|+..+|+.+|.+++...+.+..++..+...+...|..+.+..++..+++..
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 2556888999999999999999999999987656667888888889999999999999999998875
Q ss_pred -CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH
Q 001392 590 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1088)
Q Consensus 590 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 668 (1088)
..+..+...+..+|.+.|++++|...|..+ ..+..+|..|... |... |+.++|+.+|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 344557788999999999999999999976 3478889999988 9988 99999999999999
Q ss_pred hcCCC-CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC
Q 001392 669 VQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (1088)
Q Consensus 669 ~~~p~-~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~ 747 (1088)
..+.. +..+++.+...+.+.|.+++|..+|..+.+..+-. .+...|..+..+|.+.|++++|.++++.+ +..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 86532 67778888889999999999999999999655311 25678999999999999999999998876 356
Q ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 001392 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 827 (1088)
Q Consensus 748 ~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~ 827 (1088)
+++.+|..|..+|...|+.+.+....++++++.|+++..+..++.+|... +.+++|.++++
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~-------------------g~~~~a~~vr~ 715 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA-------------------GKWDEVARVRK 715 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC-------------------CChHHHHHHHH
Confidence 78999999999999999999999999999999999999888888875443 35788888888
Q ss_pred HHhhCCCC
Q 001392 828 HLSAASNL 835 (1088)
Q Consensus 828 ~l~~~~~~ 835 (1088)
.+...+-.
T Consensus 716 ~M~~~g~~ 723 (857)
T PLN03077 716 TMRENGLT 723 (857)
T ss_pred HHHHcCCC
Confidence 88776544
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.3e-31 Score=320.16 Aligned_cols=436 Identities=16% Similarity=0.135 Sum_probs=350.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+..+|..++..|+|++|+..|.+++...|+ +..+..+|.+|...|+|++|+..|.+++.++|++ ..+++.+|.++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 45678899999999999999999999999995 7789999999999999999999999999999999 778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001392 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1088)
.+|++++|+..|..++..++.+......+....+ ...+...+..++...|.+...+..++.++... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998888776654433222211111 12344556667777887766666666654221 111111
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 289 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
..+.... ...+.....+..++..+ ...+.|++|+..|.+++......|....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1122111 12233334445555443 34578999999999999743335677788999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
++++..+|.+..++..+|.++...|++++|+..|.+++..+|+++.+++.+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999987654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc
Q 001392 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1088)
....+.++|.++...|++++|+..|.+++. ..|.+
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 477888999999999999999999999987 45778
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH------HHHHH-HHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la-~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
+.+++.+|.++...|++++|+..|.+++...|..... ++..+ .++...|++++|+.++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999988864322 22222 2334469999999999999999999999999
Q ss_pred hhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 598 MLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
.+|.++...|++++|+..|++++.+.+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
No 13
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-30 Score=322.93 Aligned_cols=641 Identities=14% Similarity=0.057 Sum_probs=533.3
Q ss_pred ChHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001392 25 DASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1088)
Q Consensus 25 ~~~~l~~~L~~e--~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1088)
++..++..+... +.+...|..+...+..++.+..+..++..++...+.. .+.+.+.|...|.+.|...
T Consensus 69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~n~li~~~~~~g~~~-- 138 (857)
T PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL--------GVRLGNAMLSMFVRFGELV-- 138 (857)
T ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC--------CchHHHHHHHHHHhCCChH--
Confidence 444444444443 3456678888899999999999999999876553321 2346677888888888876
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Q 001392 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDS 181 (1088)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A 181 (1088)
.|..+|.++.. .+..+|..+...|.+.|++++|+..|..+.... ..+...+..+...+...+++..+
T Consensus 139 ---------~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 139 ---------HAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred ---------HHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 89999998853 467899999999999999999999999998643 23556666666777888999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
..++..++.........++..+..+|.+.|+++.|...|.++.. .+...|..+...|.+.|+ +.+|+..|.+..
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~ 280 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 99999998876544467788899999999999999999998643 356778899999999999 999999999998
Q ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001392 262 EIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1088)
Q Consensus 262 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1088)
... ..+..++..+...+...|+.+.+.+++..+.... ...+..++..+...|...|++++|..+|..+.. .
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~ 352 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------K 352 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------C
Confidence 753 3356778888889999999999999999988753 344568899999999999999999999998642 3
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001392 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLG 417 (1088)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la 417 (1088)
+..+|..+...|.+.|++++|+.+|..+.... |+ ..++..+...+...|+++.|..++..+.+.. ..+..++..|.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45679999999999999999999999987654 44 4566666778899999999999999999875 34677888899
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001392 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1088)
Q Consensus 418 ~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1088)
..| ..|++++|...|+++.. .+...|+.+...|...|++.+|+.+|.+++..
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------- 484 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------- 484 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-------------------
Confidence 999 99999999999987532 24678999999999999999999999999752
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCCh
Q 001392 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNL 575 (1088)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 575 (1088)
..| +..++..+..++...|..+.+..++..+++.. ..+...+..+..+|.+.|++
T Consensus 485 -----------------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 485 -----------------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred -----------------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 233 55666677778889999999999999998754 23456778889999999999
Q ss_pred HHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHH
Q 001392 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655 (1088)
Q Consensus 576 ~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~ 655 (1088)
++|...|..+ +.+..+|..+...|.+.|+.++|+.+|+++...+..++..++..+... |... |
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g 603 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------G 603 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------C
Confidence 9999999886 567889999999999999999999999999998777788888888777 8888 9
Q ss_pred HHHHHHHHHHHHHhcC--CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHH
Q 001392 656 HLEKAKELYTRVIVQH--TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1088)
Q Consensus 656 ~~~~A~~~~~~al~~~--p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (1088)
.+++|..+|+.+.... ..+...+..+..+|.+.|++++|..+++++. .. .++.+|..|...+...|+.+.|
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHHH
Confidence 9999999999998543 2367889999999999999999999999873 22 3578899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 734 i~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
....+++++. .|.++..+..|+.+|...|+|++|.++.+.+...
T Consensus 677 e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 677 ELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999987 6777889999999999999999999999888764
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.5e-31 Score=318.03 Aligned_cols=444 Identities=17% Similarity=0.131 Sum_probs=362.6
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1088)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1088)
.+..+|..|+..|+ |.+|+.+|++++...|+ +..+..+|.+|+..|++++|+..|.+++..+|++..+
T Consensus 129 ~~k~~G~~~~~~~~-----------~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a 196 (615)
T TIGR00990 129 KLKEKGNKAYRNKD-----------FNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196 (615)
T ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH
Confidence 45556666665555 45999999999999995 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
++.+|.++...|+|++|+..|..++...+.........+...+ ...+......++...|.+...+..++..+...
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 9999999999999999999999888776655222111111111 13455667777788888777777666654322
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1088)
. ...+...+......+|.....+..++..+. ..+.|++|+..|+.++......|....++..+|.++...|++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 272 R----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred c----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 1 222233344555566665555555554433 357899999999999987655677788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 401 (1088)
++|+..|.+++. ..|....+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++
T Consensus 348 ~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 348 LEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998 67888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001392 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1088)
Q Consensus 402 ~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~ 480 (1088)
++.++|++..+++.+|.++ ..|++++|+..|++++...|. .+.+++.+|.++...|++++|+..|.+++...+.
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999 999999999999999987654 4789999999999999999999999999985321
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHH-HHHHhcCCHHHHHHHHHHHHHHcCCcH
Q 001392 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA-RLLEQIHDTVAASVLYRLILFKYQDYV 559 (1088)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (1088)
.. ........+...+ .++...|++++|+.+|++++..+|++.
T Consensus 500 ~~-------------------------------------~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 500 TK-------------------------------------PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred cc-------------------------------------cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 00 0001122223333 334457999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh
Q 001392 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1088)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 594 (1088)
.++..+|.++...|++++|+.+|++++.+.+....
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999876544
No 15
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=4.6e-28 Score=273.21 Aligned_cols=670 Identities=17% Similarity=0.172 Sum_probs=374.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
+.-.+..|+..+-+|++++|+.++.+++..++. ....+.+||.+|-.+|..+ ++....-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 446677777777778888888888877766542 2446777777777777666 77777777
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---
Q 001392 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--- 196 (1088)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--- 196 (1088)
|..++|++...|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|++..|+..|.+++...|...
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 77778888888888888888888888888888888888888877778888888888888888888888888777331
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH--hCC------
Q 001392 197 -GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE--IYP------ 265 (1088)
Q Consensus 197 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~--~~p------ 265 (1088)
...-...+..+...++-+.|+..++.++.... ...+.+..++.+++.... ++.|+..+..... ..+
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 12223446666677777777777777776322 123345566666666555 6666655544433 000
Q ss_pred --------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 001392 266 --------------------YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1088)
Q Consensus 266 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1088)
.+..+ ..+..++......+....+........-.....+..++.++.+|...|.+..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 01111 122333333333333333333333222123344556666666666666666666
Q ss_pred HHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
.+|..++.. ....+...|+.+|.||..+|.++.|+++|++++...|++..+...|+.++.++|+.++|.+.+..+..-
T Consensus 435 ~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 666666542 112234456666666666666666666666666666666666666666666666666666666654422
Q ss_pred CCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHH
Q 001392 406 DPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLN--NIGVIHFEKGEFESAHQSFKD 473 (1088)
Q Consensus 406 ~p~---------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~l~~ 473 (1088)
++. ..........++ ..|+.++=+.....++..+....... +.... ..+......+.+..-......
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f-~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIF-PRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHhhccccccccchhHHHHHH
Confidence 211 122233333444 45555443332222222111100000 00000 000000001111111111111
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC---CCcCCCCcch----HHHHhHHHHHHhcCCHHHHHH
Q 001392 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG---NHVELPWNKV----TVLFNLARLLEQIHDTVAASV 546 (1088)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~ 546 (1088)
+..... +.....+-...+ .......... .....+..++.+.+++.+|..
T Consensus 592 ~~~k~~------------------------~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 592 AREKAT------------------------DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred HHhccC------------------------chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 111000 000000000000 0000111122 344456778889999999999
Q ss_pred HHHHHHHHcCC--cH----HHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCChhHHHhhhhhhhcccchHHHHHH
Q 001392 547 LYRLILFKYQD--YV----DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKET 615 (1088)
Q Consensus 547 ~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (1088)
+...++...-- +. ..-+....+.+..+++..|..+++.++.. +|..+.+|...-.+....++-.--...
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888764321 11 22233344566789999999999999888 666666666433344444544333444
Q ss_pred HHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcC------
Q 001392 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG------ 689 (1088)
Q Consensus 616 ~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g------ 689 (1088)
+..++...+..+++..+..|.. .+.. +.+.-|+..|-++...+|++|.....+|.++.+..
T Consensus 728 ~~~~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~ 794 (895)
T KOG2076|consen 728 IMRLLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVS 794 (895)
T ss_pred HHHHhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555445444445665 6666 88999999999999999999988888887776531
Q ss_pred ----CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC--------CCC--HHHHHH
Q 001392 690 ----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY--------NTD--AQILLY 755 (1088)
Q Consensus 690 ----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~--------~~~--~~~l~~ 755 (1088)
..-.++.++.+..+.-... ....+.+|+|.+|...|-..-|+.+|+++|...|. .-+ -.+-++
T Consensus 795 ~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N 871 (895)
T KOG2076|consen 795 NRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN 871 (895)
T ss_pred hhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh
Confidence 2234445554444433211 24556677777777777777777777777665321 111 445566
Q ss_pred HHHHHHhhccHHHHHHHHHHH
Q 001392 756 LARTHYEAEQWQDCKKSLLRA 776 (1088)
Q Consensus 756 La~~~~~~g~~~~A~~~l~~a 776 (1088)
|..+|...|+..-|.+++.+-
T Consensus 872 L~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 872 LHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred hhhhhccCCcHHHHHHHHHhh
Confidence 666666667766666666543
No 16
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.3e-26 Score=248.55 Aligned_cols=598 Identities=16% Similarity=0.133 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
-++..+|..++....+.+|.+|..|+.-|.+--..|++..|..+..+-....|.+...|+.-+ ++...+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999998888887654 3445566666667
Q ss_pred HHHHhCCCChhHHHHHHHH---------------------------HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 187 RALQVHPSCPGAIRLGIGL---------------------------CRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.++...|.+ ..+|+..+. ....+...+.|+..+.++++..|.+.+.|..|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 777777766 444433222 2223344555666666666666666666666665
Q ss_pred HHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHh
Q 001392 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHS 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~la~~~~~ 317 (1088)
+.. |..|...++++-+.-|.++.+|..-+.+--..|+.+.+.++..+.+.... ....+.+.|+.-+..+..
T Consensus 419 Let-------YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LET-------YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHH-------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 422 66666777777777777777777777777777777777777776664322 223344566666666666
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 001392 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1088)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1088)
.|..-.+..+....+...-...+.-..|..-++.+.+.+.++-|+..|..+++.+|....+|...+.+-...|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 66666666666655543334445555677777777777777777777777777777777777777776666777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 398 ~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+|++++...|.....|+..+..+ ..|+...|..++..++...|. +.+++..-..+.+....++.|..+|.++-.
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777777777777777776 677777777777777766443 356666666677777777777777777665
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 001392 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1088)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1088)
.. ....+|+.-+.+...+++.++|+.+++.+++.+|
T Consensus 647 ~s--------------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 IS--------------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cC--------------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 32 2445666666676777777777777777777777
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhh
Q 001392 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 636 (1088)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~ 636 (1088)
++...|+.+|.++..+++.+.|...|...++.-|.++.+|..++.+-.+.|....|..+|.++.-.+|+ +...|+....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777666 3333322222
Q ss_pred HHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 001392 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (1088)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (1088)
+ =+.. |+.+.|..+..++|+..|++...|..-..+.-+-++-..++..+++.- .++.+
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce---------~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE---------HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc---------CCchh
Confidence 2 1222 777777777777777777766666555555555555444444444431 45677
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHH
Q 001392 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1088)
Q Consensus 717 ~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nl 790 (1088)
++..|..++...++++|.+.|+++++..+ .+..++.++-..+...|.-++-..+|.+.....|.+...+-.+
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 77777777777777777777777777733 3344444555566667777777777777777777665544433
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=3.1e-27 Score=266.57 Aligned_cols=651 Identities=15% Similarity=0.097 Sum_probs=459.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
|++++|+.++..+++++|.++.+|+.+|.+|-++|+.+++..++-.+-.++|++...|..++.....+|++..|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HH-HHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV----EA-LVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 188 al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a-~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
+++.+|.+ ....+..+.+|.++|++..|...|.+++.+.|... .. ....+..+...++ -+.|++.+..++.
T Consensus 233 AI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s 308 (895)
T KOG2076|consen 233 AIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALS 308 (895)
T ss_pred HHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHh
Confidence 99999999 66788899999999999999999999999999321 11 2223445555555 5888888888888
Q ss_pred h--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------hcCC----CCCchHHHHHHHHH
Q 001392 263 I--YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------VTNH----GPTKSHSYYNLARS 314 (1088)
Q Consensus 263 ~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------~~~~----~~~~~~~~~~la~~ 314 (1088)
. +--....++.++.+|....+++.+......... .... .+....+...++.+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 3 333456678899999999999999888777665 1110 11112224455555
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCCHH
Q 001392 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIE 393 (1088)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~ 393 (1088)
....+...+++..+..-- .-.....+..++.++..+...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++
T Consensus 389 ~L~~~e~~e~ll~~l~~~--n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED--NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred cccccchHHHHHHHHHHh--cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 555566666655554322 1124556778999999999999999999999999886543 4679999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001392 394 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 394 ~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
.|+..|.+++...|++..+.+.|+.++ ..|++++|++.+.....-. +...-.....+......+++..|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999 9999999999988755221 11111223567788899999999999855
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 548 (1088)
.....++........+-. . .+. .+.. .......+........+.......++........
T Consensus 547 ~t~~~Lv~~~~~~~~~f~-----------~---~~k----~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l 606 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFP-----------R---NKK----KRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKAL 606 (895)
T ss_pred HHHHHHHHHHHHHHHhcc-----------h---HHH----HHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcc
Confidence 555555442111000000 0 000 0000 0000012333444444545444444432222211
Q ss_pred HHH-----HHHcCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC--CCh----hHHHhhhhhhhcccchHHHH
Q 001392 549 RLI-----LFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYP----NALSMLGDLELKNDDWVKAK 613 (1088)
Q Consensus 549 ~~~-----l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~----~~~~~l~~~~~~~g~~~~A~ 613 (1088)
... .....-. ...+..+..++.+.+.+++|..++..++...- .+. ...+....+-+..+++..|.
T Consensus 607 ~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~ 686 (895)
T KOG2076|consen 607 SDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAF 686 (895)
T ss_pred cchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 111 1111112 24455666778899999999999998887642 122 23344445567789999999
Q ss_pred HHHHHhhhcCCC-CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC-HHHHhhHHHHHHhcCCc
Q 001392 614 ETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQF 691 (1088)
Q Consensus 614 ~~~~~al~~~~~-~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~l~~~g~~ 691 (1088)
.+++.++....- .+++ ...+.++.+...... ++-.-=..++..++..+|.+ +......|..+...+.+
T Consensus 687 ~~lR~~i~~~~~~~~~~-q~~l~n~~~s~~~~~---------~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~ 756 (895)
T KOG2076|consen 687 SYLRSVITQFQFYLDVY-QLNLWNLDFSYFSKY---------GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASF 756 (895)
T ss_pred HHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhccCccCCcceeeeechhHhhccch
Confidence 999988875211 1222 112233101111000 44444455566677778887 66667779999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHc--c--------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001392 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ--G--------NFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~--g--------~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 761 (1088)
.-|+..|.++....| ++|-+-+.+|..+..+ + ..-+++.++.+..+.-.......++|++|++|.
T Consensus 757 ~~Al~~y~ra~~~~p-----d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 757 KHALQEYMRAFRQNP-----DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH 831 (895)
T ss_pred HHHHHHHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 999999999999998 6677766666555432 2 234556665555544212224789999999999
Q ss_pred hhccHHHHHHHHHHHHHhCCCC------------hhHHhHHHHHHHHHHH
Q 001392 762 EAEQWQDCKKSLLRAIHLAPSN------------YTLRFDAGVAMQKFSA 799 (1088)
Q Consensus 762 ~~g~~~~A~~~l~~al~~~p~~------------~~~~~nla~~~~~~~~ 799 (1088)
..|-..-|+.+|++++.+.|.+ ..+.||+.++|+.-++
T Consensus 832 ~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn 881 (895)
T KOG2076|consen 832 QIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGN 881 (895)
T ss_pred HcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCc
Confidence 9999999999999999998743 3578999999887765
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=2.8e-24 Score=232.47 Aligned_cols=597 Identities=13% Similarity=0.100 Sum_probs=500.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHH
Q 001392 34 KAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1088)
Q Consensus 34 ~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A 113 (1088)
+..|..+..|+.-|+.--..|++..|..++.++.+.++.. + .+|+..-+.. ..+.|
T Consensus 279 etnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-------e---------DvWLeaiRLh--------p~d~a 334 (913)
T KOG0495|consen 279 ETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-------E---------DVWLEAIRLH--------PPDVA 334 (913)
T ss_pred hcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-------H---------HHHHHHHhcC--------ChHHH
Confidence 3466778899999999999999999999999998876632 1 1122222211 11257
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+..++++..|+++..|+..+.+-.. ...=...+.+++...|++...|-. .....+.+.|..++.++.+..|
T Consensus 335 K~vvA~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAveccp 407 (913)
T KOG0495|consen 335 KTVVANAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECCP 407 (913)
T ss_pred HHHHHHHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhcc
Confidence 788889999999999999987766443 344567899999999998877653 3456777889999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh---C--CCCH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI---Y--PYCA 268 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~---~--p~~~ 268 (1088)
.+ ..+|+ +|.++.-|+.|...+.++-+.-|.+...|..-+.+.-..|+ .+....++.+.+.. + .-+.
T Consensus 408 ~s-~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~r 479 (913)
T KOG0495|consen 408 QS-MDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEINR 479 (913)
T ss_pred ch-HHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeecH
Confidence 98 55554 45566789999999999999999999999999999999988 55555555555432 1 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1088)
..|..-|..+-..|..-.+..+....+...-........|..-+..+...+-++-|..+|..+++ -.|.....|...
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq---vfp~k~slWlra 556 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ---VFPCKKSLWLRA 556 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh---hccchhHHHHHH
Confidence 67777788888888888888888888877666677778999999999999999999999999998 445666678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~ 427 (1088)
+..-..-|..+.-..+|++++...|.....|...+..+...|+...|..++..++..+|++..+|+.-..+. ....++.
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 888888899999999999999999999999999999999999999999999999999999999999988888 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
|..+|.++....+ ...+|..-+.+...+++.++|+.+++++++
T Consensus 637 aR~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~rllEe~lk------------------------------- 679 (913)
T KOG0495|consen 637 ARDLLAKARSISG------TERVWMKSANLERYLDNVEEALRLLEEALK------------------------------- 679 (913)
T ss_pred HHHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHHHHHHHHHH-------------------------------
Confidence 9999999887433 368888889999999999999999999998
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 587 (1088)
..|....+|..+|.++..+++.+.|...|...++..|..+..|+.|+.+-...|..-.|...+.++.-
T Consensus 680 ------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 680 ------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred ------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 588 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
.||.+..+|.....+-++.|+.+.|.....++++..|++.. .| ...+ ++.. +. ++-. .+..+
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~-LW--aEaI-~le~-~~---------~rkT----ks~DA 809 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-LW--AEAI-WLEP-RP---------QRKT----KSIDA 809 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch-hH--HHHH-Hhcc-Cc---------ccch----HHHHH
Confidence 99999999999999999999999999999999999987332 11 1111 2221 10 2222 23345
Q ss_pred HhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 668 l~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
++....|+..+..+|.++....++++|.++|.+++...| ++.++|..+-..+...|.-+.-.++|..|...-
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 556677888999999999999999999999999999998 889999999999999999999999999988763
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.3e-26 Score=285.61 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=334.6
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
+.++.. .+..|-++........++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++...|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555 5566777777777888888999999999999999888888888899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
.+ +.++..+|.++...|++++|+..+++++...|++.. +..+|.++...|+ +.+|+..+++++..+|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 667889999999999999999999999999999999 9999999999888 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHh-----cCCH---HHHHHHHHHHHHhcCCCCCchh-
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFIF- 343 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~~~- 343 (1088)
++.++...+..+.|+..++.+...+.. ..........+.+.+.. .+++ ++|+..|+.++...+..|....
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999898888766531100 00001122222333322 2334 7888899988865444443321
Q ss_pred ---hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 001392 344 ---PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 415 (1088)
Q Consensus 344 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~----~~~~~~ 415 (1088)
+.+.....+...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 222212344677999999999999988764322 344446889999999999999999999888765 355666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcC--------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001392 416 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484 (1088)
Q Consensus 416 la~l~-~~~~~~~A~~~~~~a~~~~~~~~--------~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~ 484 (1088)
++.++ ..+++++|+..+..+....|... .+. ...++..++.++...|++++|+..|++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 88999999999998887654210 011 134566778888888888888888888876
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHH
Q 001392 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564 (1088)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (1088)
..|.++.+++.+|.++...|++++|+..+++++..+|++..+++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 456777888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 565 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
++.++...|++++|...++.++...|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888888888888888888876543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.5e-25 Score=270.14 Aligned_cols=325 Identities=11% Similarity=0.019 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.|++.+|..++..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
+++..+|.+ ..++..+|.++...|++++|+..+.+++...|+++.++..++. +...|+ +.+|+..+.+++..+|.
T Consensus 135 ~Al~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 135 QAWLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCC
Confidence 999999999 7789999999999999999999999999999999988877644 677788 99999999999998763
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCCc
Q 001392 267 -CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEF 341 (1088)
Q Consensus 267 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~ 341 (1088)
.......++.++...|++++|+..+..++... |..+.+++.+|.++...|++++ |+..|.+++. ..|..
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~ 283 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDN 283 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCC
Confidence 44455667888999999999999999999754 6778999999999999999986 8999999998 56788
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~- 420 (1088)
..++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|.+++..+|.+...+..++.++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc
Q 001392 421 ISSDTGAALDAFKTARTLLKKA 442 (1088)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~ 442 (1088)
..|++++|+..|++++...|..
T Consensus 364 ~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999999987764
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=2.1e-25 Score=268.84 Aligned_cols=336 Identities=13% Similarity=0.047 Sum_probs=240.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
.+.......+..++..|++.+|+..+..++...|.++.++..+|.+....|++++|+..|++++..+|++ +.++..+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~ 118 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVAS 118 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHH
Confidence 3445566678888999999999999999999999999999999999999999999999999999999999 778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
++...|++++|+..|++++.++|+++.++..++.++...|+ +++|+..+.+++...|.++.++..++ .++..|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~---~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK---ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHH
Confidence 99999999999999999999999999999999999999998 99999999999999998887765543 366677777
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH----H
Q 001392 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS----A 361 (1088)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A 361 (1088)
+|+..+..++...+ +........++.++...|++++|+..|.+++. ..|....+++.+|.++...|++++ |
T Consensus 195 eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 195 EDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 77777766654321 11122334445566666666666666666665 345555566666666666666654 5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001392 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~ 440 (1088)
+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.++ ..|++++|+..|.+++...|
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 66666666666666666666666666666666666666666666666666666666555 55555555555555554322
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
. ....+..+|.++...|++++|+..|++++.
T Consensus 350 ~-----~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 350 V-----TSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred c-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 123333344555555555555555555554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=3.3e-25 Score=273.26 Aligned_cols=397 Identities=12% Similarity=0.005 Sum_probs=333.4
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
+.+|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++.+|+..+++++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1088)
...|++ +. ++.+|.++...|++++|+..|++++...|++..++..++.++...+. .+.|+..++++.. .|....
T Consensus 111 ~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~---~e~Al~~l~~~~~-~p~~~~ 184 (765)
T PRK10049 111 SGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL---SAPALGAIDDANL-TPAEKR 184 (765)
T ss_pred HhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHhCCC-CHHHHH
Confidence 999999 55 89999999999999999999999999999999999999999988887 8889999987765 554211
Q ss_pred -----HHHHHHHHHHh-----cCCH---HHHHHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 270 -----ALNYLANHFFF-----TGQH---FLVEQLTETALAVTNHGPTK----SHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 270 -----~~~~la~~~~~-----~g~~---~~A~~~~~~~l~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
....+..+... .+++ +.|+..++.++...+..|.. ..+.+.....+...|++++|+..|++++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 12222222222 2334 67888888888664444432 1222222334567899999999999998
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
...+..|... ...+|.+|+..|++++|+.+|++++...|.+ ......++.++...|++++|+.++.++....|.
T Consensus 265 ~~~~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 265 AEGQIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred ccCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 7422224433 3446899999999999999999999888765 456777888899999999999999999988763
Q ss_pred ---------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001392 409 ---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 472 (1088)
Q Consensus 409 ---------------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 472 (1088)
...++..++.++ ..|++++|+..+++++...|. .+.++..+|.++...|++++|+..++
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 245677888889 999999999999999987655 47899999999999999999999999
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 001392 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (1088)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (1088)
+++. ..|++..+++.+|.++...|++++|...++.++
T Consensus 418 ~al~-------------------------------------------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 418 KAEV-------------------------------------------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHh-------------------------------------------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9998 578899999999999999999999999999999
Q ss_pred HHcCCcHHHH
Q 001392 553 FKYQDYVDAY 562 (1088)
Q Consensus 553 ~~~p~~~~~~ 562 (1088)
+..|+++.+.
T Consensus 455 ~~~Pd~~~~~ 464 (765)
T PRK10049 455 AREPQDPGVQ 464 (765)
T ss_pred HhCCCCHHHH
Confidence 9999987554
No 23
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=8.6e-23 Score=252.24 Aligned_cols=546 Identities=13% Similarity=0.040 Sum_probs=415.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
..++.+++..+... .+...+..+-..+.+.|++.+|+.+|+.+...+.-. ....+..+..++...|....|..+|..+
T Consensus 354 ~~~~~~~~~~~~~~-~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 354 ENSLAAYNGGVSGK-RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhHHHhccccCCC-CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33444444444333 344455555556678899999999999887765322 1333444566677888899998888776
Q ss_pred HhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001392 224 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1088)
Q Consensus 224 l~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1088)
.. | +...|..+...+...|+ ++.|...|..+.+... .+..+++.+...|...|+++.|..+|+.+.... ..
T Consensus 433 ~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~ 504 (1060)
T PLN03218 433 RN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VE 504 (1060)
T ss_pred CC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CC
Confidence 54 4 56677777777888887 8889999988877653 467888899999999999999999999988642 23
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHH
Q 001392 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---PDNCETL 379 (1088)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~ 379 (1088)
.+..+|..+...|.+.|++++|+.+|..+... ....+..+|..+...|.+.|++++|..+|..+.... ..+..++
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 35688999999999999999999999998753 223446678899999999999999999999997631 2346788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 457 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 457 (1088)
..+..+|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+... +..++..+++.+...
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHH
Confidence 889999999999999999999998876 56778899999999 999999999999987653 445567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHh
Q 001392 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1088)
Q Consensus 458 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1088)
+.+.|++++|..+|..+...+ .+.+..++..+...|.+
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G------------------------------------------~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQG------------------------------------------IKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcC------------------------------------------CCCCHHHHHHHHHHHHh
Confidence 999999999999999998743 23367789999999999
Q ss_pred cCCHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCChhHHHhhhhhhhcccchHHHHH
Q 001392 538 IHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1088)
.|++++|..+|..+... .| +..+|..+...|.+.|++++|..+|.++.... ..+..++..+...+.+.|+++.|..
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998763 34 46889999999999999999999999987654 2345677778889999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHH
Q 001392 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1088)
Q Consensus 615 ~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A 694 (1088)
+|..+++.+..++...+..+..+ +. +.+.+|......++..++.++. ...+....|
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~~---------~~n~w~~~A 831 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRPQ---------IENKWTSWA 831 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhccccc---------cccchHHHH
Confidence 99999998877777766666433 21 4467777766666555433222 222344679
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 001392 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 774 (1088)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~ 774 (1088)
+.+|+++++..-. .+..+|..+-.|+...+....+..+++.+.. -+..++..++..|...+.. ...+|...|+
T Consensus 832 l~lf~eM~~~Gi~----Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~ 904 (1060)
T PLN03218 832 LMVYRETISAGTL----PTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGE--YDPRAFSLLE 904 (1060)
T ss_pred HHHHHHHHHCCCC----CCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhcc--ChHHHHHHHH
Confidence 9999999987621 2456677777788888888888777766432 2345566777777776622 1358999999
Q ss_pred HHHHh
Q 001392 775 RAIHL 779 (1088)
Q Consensus 775 ~al~~ 779 (1088)
.+...
T Consensus 905 em~~~ 909 (1060)
T PLN03218 905 EAASL 909 (1060)
T ss_pred HHHHc
Confidence 98885
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.1e-25 Score=230.90 Aligned_cols=429 Identities=16% Similarity=0.163 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.++-.+|.-+++.|+|++|+++|.+++.+.|+. +..|.+++.||..+|++++.++...++++++|+.+.+++..+..+-
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 345556677777777777777777777777776 4556777777777777777777777777777777777777777777
Q ss_pred hhchHHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1088)
..|+ +.+|+....-..-+. -.+......+-..+-. .+..-....+. .+..|..+...+.-. |+.
T Consensus 195 ~lg~---~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k-~nr~p~lPS~~fi~s--yf~---- 259 (606)
T KOG0547|consen 195 QLGK---FDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLK-ENRPPVLPSATFIAS--YFG---- 259 (606)
T ss_pred hhcc---HHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhc-ccCCCCCCcHHHHHH--HHh----
Confidence 7777 666665433211110 0011000000001100 01111111111 011222222211100 000
Q ss_pred HHHHHHHHHHHHhcCCCC-CchhhHhhHHHHHHHc---CCHHHHHHHHHHHHHhC----CCc---------HHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKL---GDFRSALTNFEKVLEIY----PDN---------CETLKALGH 384 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~----p~~---------~~~~~~la~ 384 (1088)
.|..-+......+ +...+-..-+.-+... ..|..|...+.+..... ..+ ..++...|.
T Consensus 260 -----sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 260 -----SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred -----hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 0000000000000 0000000000011111 13444444443332211 001 345555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (1088)
.++-.|++-.|...|.+++.++|.+...|+.++.+| ....+.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y--------------------------------------~d~~~~ 376 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAY--------------------------------------ADENQS 376 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHH--------------------------------------hhhhcc
Confidence 555666666666666666666665555555444444 444455
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHH
Q 001392 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544 (1088)
Q Consensus 465 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 544 (1088)
.+-...|.++.. ++|.++.+|+..|.++.-++++++|
T Consensus 377 ~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 377 EKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred HHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 555555555555 5677788888888888888888888
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCC
Q 001392 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1088)
Q Consensus 545 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 624 (1088)
+.-|++++.++|+++.++..++.+..+++.+.++...|+.+....|+.++++...|.++..+++++.|.+.|.+++.+.|
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred CCCh-----HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHH
Q 001392 625 GKDS-----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 699 (1088)
Q Consensus 625 ~~d~-----~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ 699 (1088)
..+. ..++.-+.+ .++ ..+++..|+.+++++++++|.+..++.+||.+..++|+.++|+++|+
T Consensus 494 ~~~~~~v~~~plV~Ka~l-~~q-----------wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALL-VLQ-----------WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ccccccccchhhhhhhHh-hhc-----------hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5221 112222222 111 11899999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 001392 700 QVQEAA 705 (1088)
Q Consensus 700 ~~~~~~ 705 (1088)
+.....
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 998865
No 25
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=1.9e-22 Score=249.30 Aligned_cols=546 Identities=11% Similarity=0.005 Sum_probs=383.0
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
.++.+++....-.+ +...++..-..+.+.|++.+|+.+|+.+...+. .+...+..+...+...|.+.+|+.+|..+.
T Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 355 NSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 45555555554433 444555566667788888888888888876652 344444555666777888888888887665
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC-CC
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 267 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~ 267 (1088)
. |+ ..++..+..+|...|+++.|..+|..+.+.... +...+..+...|.+.|+ ++.|..+|..+..... .+
T Consensus 434 ~--pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 434 N--PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred C--CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCC
Confidence 4 44 456777777888888888888888888876543 56777888888888888 8888888888877653 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
..+|+.+...|.+.|++++|..+|..+.... ...+..+|..+...|...|++++|..+|..+............+|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 7888888888888888888888888887542 22345778888888888888888888888887521112233566788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCC
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSD 424 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~ 424 (1088)
+...|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|+.+|.++.... ..+...|..+...+ ..|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 8888888888888888888888765 4567788888888888888889988888887753 22466777788888 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
+++|..++..+.+. +...+..+++.+...|.+.|++++|..+|..+...+
T Consensus 665 ~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-------------------------- 714 (1060)
T PLN03218 665 LDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-------------------------- 714 (1060)
T ss_pred HHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------------------------
Confidence 88888888877653 455567888888888888999999988888876532
Q ss_pred hhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~ 583 (1088)
..| +..+|..+...|.+.|++++|..+|..+.... ..+..+|..+...+...|+++.|..++.
T Consensus 715 ---------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 715 ---------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred ---------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223 56778888888888899999998888887642 2345677777788888888888988888
Q ss_pred HHHHHCCC-ChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHH
Q 001392 584 EALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662 (1088)
Q Consensus 584 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 662 (1088)
.+++.... +..++..+..++. +.+.+|.......+... .++. +... +....|+.
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----------~g~~-~~~n------------~w~~~Al~ 833 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----------SGRP-QIEN------------KWTSWALM 833 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----------cccc-cccc------------chHHHHHH
Confidence 88876522 2333443332222 24555555544333221 1222 2222 44567888
Q ss_pred HHHHHHhcCC-CCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001392 663 LYTRVIVQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (1088)
Q Consensus 663 ~~~~al~~~p-~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al 741 (1088)
+|++++...- .+..++..+-.++...+....+..++..+.... ...+..+|..+.+.+... ..+|..+|+.|.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~----~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA----DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC----CCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 8888888662 245555555556666666666666665543221 124566777777776321 357888888888
Q ss_pred HHh
Q 001392 742 RKF 744 (1088)
Q Consensus 742 ~~~ 744 (1088)
...
T Consensus 908 ~~G 910 (1060)
T PLN03218 908 SLG 910 (1060)
T ss_pred HcC
Confidence 764
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.9e-25 Score=230.03 Aligned_cols=427 Identities=16% Similarity=0.144 Sum_probs=325.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+-.+|+-++..|+|++|+++|..++...|+.+..+-.++-||...|+|++-++...++++++|+. .-+++..+.++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999999999999 778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh-cCCH
Q 001392 209 KLGQLGKARQAFQRALQLD-PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI--YPYCAMALNYLANHFFF-TGQH 284 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~-~g~~ 284 (1088)
.+|++.+|+.-..-..-+. -++......+-.++-. .|+.....-++. .|.-|. -..++.++.. ..+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk--------~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK--------QAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH--------HHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccc
Confidence 9999999987655332221 1122222222222222 233333433431 222221 1111111100 0000
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcC-CCCCc---------hhhHhhHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEIN-KPHEF---------IFPYYGLGQV 351 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~-~~~~~---------~~~~~~la~~ 351 (1088)
..........+.....-+.-+...+ .|..|...+.+...... ....+ +.++...|..
T Consensus 266 ----------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 266 ----------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred ----------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0000000111222222222222233 57777777776654211 11112 5677788889
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHH
Q 001392 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (1088)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~ 430 (1088)
++-.|++-.|...|+.++.++|.+...|..++.+|....+..+....|.++..++|.++.+|+..|.++ ..+++++|+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1088)
-|++++.+.|. .+..+..++.+.++.+.+.++...|+.+..
T Consensus 416 DF~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk---------------------------------- 456 (606)
T KOG0547|consen 416 DFQKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK---------------------------------- 456 (606)
T ss_pred HHHHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 99999998776 377888999999999999999999999988
Q ss_pred hccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHH-HcCChHHHHHHHH
Q 001392 511 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVN 583 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~l~ 583 (1088)
..|..+.++...|.++..+++++.|++.|..++.+.|. ++..+...|.+.. -.+++..|+.++.
T Consensus 457 ---------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 457 ---------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred ---------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 46788899999999999999999999999999999988 5555555554432 3489999999999
Q ss_pred HHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 584 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
++++++|.+..++..||.+.+++|+.++|+++|++++.+.
T Consensus 528 KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987754
No 27
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=2.2e-23 Score=256.70 Aligned_cols=466 Identities=13% Similarity=0.017 Sum_probs=349.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHH
Q 001392 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1088)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1088)
.|..+...+...|++..|..+|..+...... ..+..++..+..++...++++.|..++..+.... . .....++..+.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~-~~~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESSG-F-EPDQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-C-CcchHHHHHHH
Confidence 4555566666777777777777766543221 2344667777777777888888888877776531 2 23456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-hcCCHHH
Q 001392 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p-~~~~~~~~la~l~-~~~~~~~ 427 (1088)
.+|.+.|+++.|..+|+.+.. .+..+|..+...|.+.|++++|+.+|.++....+ .+..++..+...+ ..+....
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 888888888888888877743 3566778888888888888888888888876542 2345555555666 7777777
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
+..++..+.+. +...+..+++.+...|.+.|++++|..+|..+..
T Consensus 243 ~~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------------------------------- 287 (697)
T PLN03081 243 GQQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------------------------------- 287 (697)
T ss_pred HHHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------------
Confidence 77766655443 3344567788888888899999999888876532
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 586 (1088)
.+..+|..+...|...|++++|..+|..+.... ..+..+|..+...+...|.+++|..++..++
T Consensus 288 ---------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 288 ---------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred ---------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 256788888888999999999999998887642 2245688888888889999999999988888
Q ss_pred HHC-CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 587 KVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 587 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
+.. +.+..++..+...|.+.|+++.|..+|+++.. ++..+|..|... |... |+.++|+++|+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~ 415 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GRGTKAVEMFE 415 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CCHHHHHHHHH
Confidence 876 55677888889999999999999999987654 366778888888 8888 88999999999
Q ss_pred HHHhcCCC-CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 666 RVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 666 ~al~~~p~-~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
++...+.. +..+++.+...+.+.|.+++|..+|..+.+..+-. .+...|..+..+|.+.|++++|.++++.+
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---p~~~~y~~li~~l~r~G~~~eA~~~~~~~---- 488 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK---PRAMHYACMIELLGREGLLDEAYAMIRRA---- 488 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC---CCccchHhHHHHHHhcCCHHHHHHHHHHC----
Confidence 98876532 67788888888999999999999999998754211 24567888899999999999999887653
Q ss_pred cCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHH
Q 001392 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 824 (1088)
Q Consensus 745 ~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~ 824 (1088)
+..++..+|..|..+|...|+++.|..++++++.+.|.+...+..++.+|. ..+.+++|.+
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~-------------------~~G~~~~A~~ 549 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN-------------------SSGRQAEAAK 549 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH-------------------hCCCHHHHHH
Confidence 456778888999999999999999999999999999987666555554433 3345788888
Q ss_pred HHHHHhhCCC
Q 001392 825 VFSHLSAASN 834 (1088)
Q Consensus 825 ~f~~l~~~~~ 834 (1088)
++..+...+-
T Consensus 550 v~~~m~~~g~ 559 (697)
T PLN03081 550 VVETLKRKGL 559 (697)
T ss_pred HHHHHHHcCC
Confidence 8888877654
No 28
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.94 E-value=3.1e-22 Score=226.47 Aligned_cols=656 Identities=16% Similarity=0.064 Sum_probs=471.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH--------------hchhhhh-hhhh
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY--------------LGKIETK-QREK 106 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~--------------~g~~~~~-~~~r 106 (1088)
.....+.+......|.++..++....... |.+. .+..+.|++.+ .+..... ..-.
T Consensus 401 n~~akgl~~ie~~~y~Daa~tl~lv~~~s----~nd~------slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~ 470 (1238)
T KOG1127|consen 401 NQRAKGLAPIEANVYTDAAITLDLVSSLS----FNDD------SLSELSWCLPRALEKMMDVALLLECENSEFWVALGCM 470 (1238)
T ss_pred hhhhcchhHHHHhhchHHHHHHHHHHHhh----cCch------hhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 35666777788888888888777653321 1111 12222222221 1111000 0011
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.++...|...|-++++++|+...+|..+|..|...-+...|.++|+++..++|++..+.-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 187 RALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 187 ~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
.+-+..|.. ....|..+|..|...+++..|+..|+.++..+|.+..+|..+|.+|...|. +..|++.|.++..++|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCc
Confidence 766666543 123456699999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----C
Q 001392 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN----HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----K 337 (1088)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~ 337 (1088)
.+..+.+..+.+....|.|..+...+...+.... .....++++..++..++..|-+.+|..++++++..+. .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988875321 1234567888888889999999999999988876321 0
Q ss_pred C-CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---hcCCH------HHHHHHHHHHHHhCC
Q 001392 338 P-HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQI------EKAQELLRKAAKIDP 407 (1088)
Q Consensus 338 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~------~~A~~~~~k~l~~~p 407 (1088)
. ......|..++... .+| ....|+.+..++ ++.+.- ..+.. --|.+++-..+++..
T Consensus 708 ~~~~~~~~Wi~asdac----------~~f---~q~e~~~vn~h~-l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDAC----------YIF---SQEEPSIVNMHY-LIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI 773 (1238)
T ss_pred hhhhhHHHHHHHhHHH----------HHH---HHhcccchHHHH-HHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence 0 11122222222221 122 222244332222 111111 11111 123344444443322
Q ss_pred CCHHHHHHHHHHH-h--------cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 408 RDAQAFIDLGELL-I--------SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 408 ~~~~~~~~la~l~-~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
++..|++||.-| . ..+...|+.++.+++++..+ +...|+.+|.+ ...|++.-|..+|-+.+.
T Consensus 774 -~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-----n~~~WnaLGVl-sg~gnva~aQHCfIks~~-- 844 (1238)
T KOG1127|consen 774 -HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-----NEGLWNALGVL-SGIGNVACAQHCFIKSRF-- 844 (1238)
T ss_pred -ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-----cHHHHHHHHHh-hccchhhhhhhhhhhhhh--
Confidence 256677777654 2 22445889999999998665 37889999988 667999999999988876
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc
Q 001392 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1088)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1088)
..|.....|+|+|.++....+++-|...|..+..++|.+
T Consensus 845 -----------------------------------------sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 845 -----------------------------------------SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred -----------------------------------------ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 567788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-----hhHHHhhhhhhhcccchHHHHHHHHHh----------hhcC
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA----------SDAT 623 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a----------l~~~ 623 (1088)
...|...+.+....|+.-++...|.....+.... ...|..-...+..+|+++.-+..-+++ +...
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 9999999999999999999999998855444222 224445555667777766655554443 3333
Q ss_pred CCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc-----C-CCCHHHHhhHHHHHHhcCCchHHHHH
Q 001392 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-----H-TSNLYAANGAGVVLAEKGQFDVSKDL 697 (1088)
Q Consensus 624 ~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~-p~~~~a~~~la~~l~~~g~~~~A~~~ 697 (1088)
|. ..+++...|.. .-.. +.+..|.+.+.+.+.+ + .....+--..|.+++..|.++.|...
T Consensus 964 p~-~~fAy~~~gst-lEhL------------~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 964 PQ-LCFAYAANGST-LEHL------------EEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred cc-hhHHHHHHHhH-HHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 44 55666666655 4444 6777777777665442 1 11233666788999999999977665
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHH
Q 001392 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRA 776 (1088)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~a 776 (1088)
+...-... +....-+.+ ..+-.|+|.++.+.|++++.......+ +.++..++.+....+..+.|...+-++
T Consensus 1030 ~~~~~~ev------dEdi~gt~l--~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1030 SWKEWMEV------DEDIRGTDL--TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred hcccchhH------HHHHhhhhH--HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 54432211 111111122 226679999999999999998655555 556667888889999999999999999
Q ss_pred HHhCCCChhHHhHHHHHHHH
Q 001392 777 IHLAPSNYTLRFDAGVAMQK 796 (1088)
Q Consensus 777 l~~~p~~~~~~~nla~~~~~ 796 (1088)
+.+.|.+....+-++.++--
T Consensus 1102 ~~ls~~~~~sll~L~A~~il 1121 (1238)
T KOG1127|consen 1102 KSLSKVQASSLLPLPAVYIL 1121 (1238)
T ss_pred HHhCccchhhHHHHHHHHHH
Confidence 99999998888888776433
No 29
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=4.8e-23 Score=253.78 Aligned_cols=463 Identities=12% Similarity=0.005 Sum_probs=338.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
.|......+...|++.+|+..|..+.... +.+...+..+..++.+.+++..|..++..+..........++..+..+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56666677777778888888877776543 2345666666677777777777777777766654322245566666777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
.+.|+++.|...|..+.. | +. .+|+.+...|...|++++|
T Consensus 169 ~k~g~~~~A~~lf~~m~~--~-~~-------------------------------------~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE--R-NL-------------------------------------ASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred hcCCCHHHHHHHHhcCCC--C-Ce-------------------------------------eeHHHHHHHHHHCcCHHHH
Confidence 777777777777666532 2 23 3444444444455555555
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH
Q 001392 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1088)
..+|..+.... ......++..+..++...|....+..++..+++. .......++..+...|.+.|++++|...|+.
T Consensus 209 ~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 209 FALFREMWEDG--SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHhC--CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55555554321 1223355666666777777788777777776653 2233455677788888888888888888877
Q ss_pred HHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
+. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..++..+...+ ..|.++.|...+..+.+. +..
T Consensus 285 m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~ 357 (697)
T PLN03081 285 MP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFP 357 (697)
T ss_pred CC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCC
Confidence 63 4567788888888999999999999998887643 33566777777777 888888888888877654 444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch
Q 001392 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1088)
.+..+++.+...|.+.|++++|...|.++.. .+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------------------------------------------~d~ 391 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------------------------------------------KNL 391 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------CCe
Confidence 5577888899999999999999999987643 155
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--ChhHHHhhhhh
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGDL 602 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~l~~~ 602 (1088)
.+|+.+...|...|+.++|+.+|+++.... ..+..++..+...+...|.+++|..+|+.+....+- +...+..+..+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 678889999999999999999999988743 224677888888888999999999999998865433 34578888999
Q ss_pred hhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHH
Q 001392 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (1088)
Q Consensus 603 ~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la 682 (1088)
|.+.|++++|.+.++++ ...++..+|..|... |... |+++.|...+++++...|.++..+..++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 99999999999988764 233466777778777 7777 8899999999999999999888899999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHh
Q 001392 683 VVLAEKGQFDVSKDLFTQVQEAA 705 (1088)
Q Consensus 683 ~~l~~~g~~~~A~~~~~~~~~~~ 705 (1088)
.+|...|++++|.++++.+.+..
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999998865
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=1.6e-22 Score=243.16 Aligned_cols=468 Identities=10% Similarity=-0.031 Sum_probs=315.2
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
-..|..+...+..+.+.++.|++..|+..|.++++.+|.++.+...++.++...|++.+|+.++++++...|.. .....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-~~~ll 106 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-SRGLA 106 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-HHHHH
Confidence 34566666666666666666666666666666666666665444466666666666666666666666222222 22233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.++...|++++|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++.++...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 335566666666666666666666666666666666666666655 666666666666666664443 3334444445
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc------
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------ 355 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~------ 355 (1088)
++..+|+..+++++... |.....+..+..++...|-...|.+...+--..+ ............+.-.++.
T Consensus 183 ~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 55545666666666443 5555666666666666666666665544322111 0001001111111111111
Q ss_pred ---C---CHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-
Q 001392 356 ---G---DFRSALTNFEKVLEIYPDNC-------ETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL- 420 (1088)
Q Consensus 356 ---g---~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~- 420 (1088)
. -.+.|+.-++.++...+..+ .+..-...++...+++.+++..|+.+.... |--..+....|..|
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1 23557777777777443322 344455666778899999999999887554 33456777788888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh-hhhcccccchhhhhhhhh
Q 001392 421 ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS 498 (1088)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~-~~~~~~~~~~~~~~~~~~ 498 (1088)
..+++.+|..+|..++...+.. ..+........|...|...+++++|..++.+.....|+ .......
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~----------- 407 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP----------- 407 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC-----------
Confidence 9999999999999987654321 11222334567888899999999999999999875442 1111110
Q ss_pred HHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHH
Q 001392 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (1088)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 578 (1088)
....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.+..|
T Consensus 408 ------------------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 408 ------------------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred ------------------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 11156777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCC
Q 001392 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (1088)
Q Consensus 579 ~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d 627 (1088)
...++.++.++|.+..+...++.+++..++|.+|......++...|+..
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999999999999999999999999999998843
No 31
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.94 E-value=5.3e-22 Score=224.63 Aligned_cols=598 Identities=15% Similarity=0.085 Sum_probs=344.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
|..+|..|+..+++-.|+..|+.++..+|.+..+|.++|.+|...|.|..|++.|.++..++|.+ ....+..+.+...+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMECDN 643 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHh
Confidence 34455555555666666666777777777777777777777777777777777777777777776 55566667777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-----------HHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------AAGIRKGMEKMQRAFEIY-PYCAMALNYLANHF 278 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~ 278 (1088)
|.|.+|+..+...+........+...++.++++.-. ...+++++..|.-++... -.+...|..++...
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 777777777766666555444444444444443211 011233333333333322 23333333333222
Q ss_pred HhcCCHH--H---------------------------HHHHHHHHHhhcCCCCCchHHHHHHHHHHHh--------cCCH
Q 001392 279 FFTGQHF--L---------------------------VEQLTETALAVTNHGPTKSHSYYNLARSYHS--------KGDY 321 (1088)
Q Consensus 279 ~~~g~~~--~---------------------------A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~--------~g~~ 321 (1088)
...-..+ . +.+.+-..++. ...+..|+++|..|++ +.+.
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl----~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL----AIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH----hhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 1110000 0 11111111111 1124567777777665 1233
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 401 (1088)
..|+..+.++++ ...++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++-|...|.+
T Consensus 800 ~~Ai~c~KkaV~---L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVS---LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHH---HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 467777777776 344555667777776 5557788888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001392 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1088)
Q Consensus 402 ~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~ 480 (1088)
+..++|.+...|...+.+. ..|+.-+++..|..........+.......+.+....+..+|+++.-+..-.++-....
T Consensus 876 ~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~- 954 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL- 954 (1238)
T ss_pred hhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH-
Confidence 8888888888888777777 77777777777766555444444444456666666677777777666655544432110
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH------
Q 001392 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK------ 554 (1088)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------ 554 (1088)
-...+| ...|....++...|.++..++.+..|...+.+++..
T Consensus 955 ----------------------al~~yf----------~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 955 ----------------------ALSYYF----------LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred ----------------------HHHHHH----------hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000011 145777788888888888888888888887776541
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-HHHhhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHH
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATL 632 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~a~~ 632 (1088)
...+..+--.+|.+++..|+++.|...+... |.... -........+-.|++.++.+.|++++.+..+ .+...++
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~----~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl 1078 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKE----WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLL 1078 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhccc----chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhh
Confidence 1223346666777788888887665443321 11110 0011111124567788888888888876544 2333332
Q ss_pred HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 001392 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (1088)
Q Consensus 633 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (1088)
.-+.+..... +.-+-|...+-+++.+.|........|+.++.-..+-.....+.++....... .. -
T Consensus 1079 ~kva~~~g~~------------~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~-e~-~ 1144 (1238)
T KOG1127|consen 1079 CKVAVCMGLA------------RQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKL-EW-F 1144 (1238)
T ss_pred HHHHHHHhhc------------ccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhh-HH-h
Confidence 2222201111 55667777777788888777777777777766554443333333333332110 00 0
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-c-------------cHHHHHHHHHHHHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-E-------------QWQDCKKSLLRAIH 778 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~-g-------------~~~~A~~~l~~al~ 778 (1088)
+-+.-+..-.+|..+|+-..-.+.+++++-. .|.++.+|..|..-|... + .+..-++..+++..
T Consensus 1145 ~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL~vrya~~n~~n~v~a~~~~k~y~~t~~l~~iQ~a~~ 1222 (1238)
T KOG1127|consen 1145 CWPPGLLKELIYALQGRSVAVKKQIQRAVHS--NPGDPALWSLLSVRYAQRNAKNGVVANHGKKAYLYTAVLKTIQKAAL 1222 (1238)
T ss_pred ccChhHHHHHHHHHhhhhHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHhccCCeehhHHHHHHHHHHHHHHHHHHHh
Confidence 1222233445666777777777777777765 455566666555322111 0 12233555677777
Q ss_pred hCCCChhHHhHH
Q 001392 779 LAPSNYTLRFDA 790 (1088)
Q Consensus 779 ~~p~~~~~~~nl 790 (1088)
+.|.|+.++-.+
T Consensus 1223 L~Pwd~a~wkaL 1234 (1238)
T KOG1127|consen 1223 LSPWDPAIWKAL 1234 (1238)
T ss_pred cCCCCHHHHHHH
Confidence 888877766543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.1e-23 Score=216.06 Aligned_cols=457 Identities=19% Similarity=0.168 Sum_probs=353.3
Q ss_pred HHHHHHHHHHHHHhhc--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHH
Q 001392 108 EHFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSD 180 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~ 180 (1088)
.-+.+|+..|+-.++- .|+....-+..|.+++++.+|.+|+++|+-++..-|.- ...+...|..+.+.|.|+.
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3445888888777643 46666677788999999999999999999999888752 4567778888899999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C---------CCH-HHHHHHHH--HHHhhch
Q 001392 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--P---------ENV-EALVALAV--MDLQANE 246 (1088)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p---------~~~-~a~~~la~--~~~~~~~ 246 (1088)
|+..|+.++...|+.. +-+.+..|++..|+-++-...|.+++.+- | +++ ..++.-+. -.++.-.
T Consensus 295 ainsfdh~m~~~pn~~--a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEEAPNFI--AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHhCccHH--hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 9999999999999873 34678889999999999999999998751 1 111 11222111 1111100
Q ss_pred HHhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 001392 247 AAGIRKGMEKMQRAFEI-----YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1088)
..+-..|.+.+..+.++ .|+... .-.++-..++.....+...+.-.+.+-.+.+.|++
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~-----------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAA-----------------GCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhc-----------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 01111222222222222 122211 11122222222222333345566778889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (1088)
+.|++++.-.-+. .+.....+-.+|..+++.+ .++..|..+...++.++.-++.++.+.|.+.+..|++++|...|
T Consensus 436 ~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999998765542 2222333456666666664 37889999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 400 ~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
+.++..+.....+++++|..+ ..|+.++|+.+|-+...++.+ ++++++.++.+|-.+.+...|+++|.++..
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~s-- 586 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANS-- 586 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--
Confidence 999999999999999999999 999999999999999888776 489999999999999999999999999877
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc
Q 001392 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1088)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1088)
.-|.++.++..||.+|-+.|+..+|.+++-......|-+
T Consensus 587 -----------------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 587 -----------------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence 568899999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHh
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 634 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~l 634 (1088)
.++.-.|+..|....-+++|+.+|+++.-+.|+......+++.|+.+.|+|..|..+|+.+....|. +...+-.|
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkfl 700 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFL 700 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 9999999999999999999999999999999998888888999999999999999999999998887 54444333
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.7e-22 Score=241.23 Aligned_cols=442 Identities=12% Similarity=-0.002 Sum_probs=353.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
|+|++..|+..|.++++.+|.++.....++.++...|++++|+.++++++...|.+...+..+|.++...|+|++|+.+|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45556699999999999999997555588899999999999999999999444445556666688999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
++++..+|++ +.++..++.++...++.++|+..+.+++..+|.+... ..++.++...++ ..+|+..+++++..+|
T Consensus 126 ~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P 200 (822)
T PRK14574 126 QSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCC
Confidence 9999999999 7778899999999999999999999999999986554 555555544444 6669999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc---------C---CHHHHHHHHHHHHH
Q 001392 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASVK 333 (1088)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~al~ 333 (1088)
.+..++..+...+...|-...|.++...--..... ......-...+.-..+. . -.+.|+..+..++.
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998887754322111 00001111111111111 1 24567777777776
Q ss_pred hcCCCCC----chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-
Q 001392 334 EINKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP- 407 (1088)
Q Consensus 334 ~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p- 407 (1088)
..+..|. ...+....-.++...|++.+++..|+.+.... |-...+....|..|+..+++++|..+|..++...|
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 4444342 23345566777889999999999999987654 33456888899999999999999999999988653
Q ss_pred -----CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 408 -----RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-A---------GEEVPIEVLNNIGVIHFEKGEFESAHQSF 471 (1088)
Q Consensus 408 -----~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~-~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~l 471 (1088)
........|...+ ..+++++|..++.+.....|- . +.+.-......++.++...|++.+|...+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2333346667777 999999999999999875441 0 11111467777899999999999999999
Q ss_pred HHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 001392 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1088)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1088)
++.+. ..|.+..+...+|.++...|.+..|...++.+
T Consensus 440 e~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 440 EDLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99987 56889999999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHH
Q 001392 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (1088)
Q Consensus 552 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 596 (1088)
+..+|.+..+...++.++..++++.+|......++...|+++.+.
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999999999999999999999999998654
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=9.4e-24 Score=218.58 Aligned_cols=478 Identities=18% Similarity=0.171 Sum_probs=278.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~ 202 (1088)
.+++.++..|.....+.+|+..|+.+++. .|+....-..+|.++++..+|.+|+++|+-++..-|... ..++..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 56788999999999999999999998864 577777888999999999999999999999999888653 345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC--------------CCCH
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 268 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~--------------p~~~ 268 (1088)
+|..+.+.|.|+.|+..|..+.+..|+. .+-++|..+++..|+ .++-.+.|.+.+.+- |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~-~a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNF-IAALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccH-HhhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 8999999999999999999999999954 455677788888888 666666677776541 1111
Q ss_pred HHHHHHHH-HH--HhcCCHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 001392 269 MALNYLAN-HF--FFTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1088)
Q Consensus 269 ~~~~~la~-~~--~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1088)
.+--.+-. ++ +...+-..|++..-.+.+... ..|..+..+ .+.-..++.....+....
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~-----------------dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC-----------------DWCLESLKASQHAELAID 420 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc-----------------HHHHHHHHHhhhhhhhhh
Confidence 11111100 00 011111112222222221110 001000001 111111110001111122
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
.-.+.+..+++.|+++.|++.+.-.-+.+... ..+-.+|..+++.+ .++..|..+-..++.++.-++.++.+.|.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 23344555666666666666655444333221 12233333333332 2556666666666666666666666666655
Q ss_pred -hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001392 421 -ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1088)
Q Consensus 421 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1088)
..|++++|...|+.++..... -.+.++++|..+-.+|+.++|+.+|-+...+
T Consensus 501 f~ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i---------------------- 553 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI---------------------- 553 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----------------------
Confidence 666666666666666553222 2456666666666666666666666555431
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHH
Q 001392 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 579 (1088)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 579 (1088)
--+++.+++.++.+|..+.+..+|+++|-++...-|+++.++..|+.+|-+.|+-.+|.
T Consensus 554 ---------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 554 ---------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred ---------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 12355566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHH
Q 001392 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (1088)
Q Consensus 580 ~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 659 (1088)
.++-......|.+.++.-.++..|+...-+++|+.+|+++.-+.|....+-+ .++.+ +... |+|.+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql-miasc-~rrs------------gnyqk 678 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL-MIASC-FRRS------------GNYQK 678 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH-HHHHH-HHhc------------ccHHH
Confidence 6666666666666666666666666666666666666666555554222221 22333 4333 66666
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHHHHhcC
Q 001392 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKG 689 (1088)
Q Consensus 660 A~~~~~~al~~~p~~~~a~~~la~~l~~~g 689 (1088)
|+.+|+..-+..|.+...+-.|..+....|
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 666666666666666665555555544444
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-22 Score=216.92 Aligned_cols=509 Identities=14% Similarity=0.114 Sum_probs=355.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+..+-+-+..+.+|..|+-+-+++..+. .+ +.-.+.+|.|++-.|++..|......- .+...+..+.+..+.++...
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~-~d-p~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT-ND-PADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc-CC-hHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHH
Confidence 3334445566778888888888887776 44 333566888888888888887776654 45555666677777777776
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1088)
.+ ++.|+.++.+. ... .++..+. +.. + +......+..
T Consensus 96 k~---~~~al~vl~~~-~~~-~~~f~yy-----------------------------~~~--~----~~~l~~n~~~--- 132 (611)
T KOG1173|consen 96 KE---WDQALLVLGRG-HVE-TNPFSYY-----------------------------EKD--A----ANTLELNSAG--- 132 (611)
T ss_pred HH---HHHHHHHhccc-chh-hcchhhc-----------------------------chh--h----hceeccCccc---
Confidence 66 66666665543 000 0000000 000 0 0000000000
Q ss_pred HHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH--
Q 001392 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA-- 402 (1088)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~-- 402 (1088)
... ........++..|.+|....++++|...|..++..++.+.+++..+.....-.. .+-...+...
T Consensus 133 -~~~--------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~--~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 133 -EDL--------MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA--QEEFELLESLDL 201 (611)
T ss_pred -ccc--------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch--hHHHHHHhcccH
Confidence 000 111223346667778888888888888888888887777776666555443321 1111111110
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCH-HHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001392 403 AKIDPRDAQAFIDLGELLISSDT-GAALDAF--KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1088)
Q Consensus 403 l~~~p~~~~~~~~la~l~~~~~~-~~A~~~~--~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~ 479 (1088)
-.....+....-.+-.+.....+ +.+...- .... +...+..++...+..++..++|.+..+++...+..
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~------~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-- 273 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI------GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-- 273 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh------hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--
Confidence 00000111111111111100000 0000000 0111 11224678888899999999999999999999884
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch-HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc
Q 001392 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1088)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1088)
+|... ..-..+| ++...|+..+-..+-.+++..+|+.
T Consensus 274 -----------------------------------------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 274 -----------------------------------------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred -----------------------------------------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCC
Confidence 33333 4445556 8888899888888888999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHH
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 638 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~ 638 (1088)
+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+.-.|..++|+..|..+.+..+.... ..+.+|.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgme- 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGME- 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999998776322 23345655
Q ss_pred HHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchhH
Q 001392 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDV 716 (1088)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~ 716 (1088)
|..+ +++..|..+|.+++.+.|.++...+-+|.+....+.+.+|..+|+.++...+.. ..+.....
T Consensus 390 y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 390 YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 8888 999999999999999999999999999999999999999999999999654431 11134567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHH
Q 001392 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (1088)
Q Consensus 717 ~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~ 796 (1088)
+.||||+|.+++.+.+||..|+++|.. .+.++.++..+|.+|...|+++.|+..|.+++-+.|++..+.--|+.+++.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999998 788899999999999999999999999999999999997776666665443
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-22 Score=216.91 Aligned_cols=447 Identities=17% Similarity=0.164 Sum_probs=364.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
+..|..|+-+-+++..+. .+|.-.+.+|.+++..|+|..|......- .....+..+.+..+.++....+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888899999999999999998877665 5666788999999999999999999999988
Q ss_pred HH------HHhCCCC------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.. +...|.+ ...+.+..|.+|..+.++++|...|..++..++.+.++...+....+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33 1111211 12345667888999999999999999999999999888766654433
Q ss_pred hhchH-----H------hHHHHHHHHHHHHHh-------------C--------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 243 QANEA-----A------GIRKGMEKMQRAFEI-------------Y--------PYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 243 ~~~~~-----~------~~~~Al~~~~~al~~-------------~--------p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
..... . ...+-.+.+...+++ + ..++.++...+..++..+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 32210 0 001111111111111 1 24667788889999999999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
++..+... |....++....-+++..|+..+-..+-.+.+. ..|..+..|+.+|..|...|++.+|..+|.++..
T Consensus 267 t~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 267 TEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred hHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 99999754 44444444444488899988777777677776 7788889999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001392 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1088)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1088)
++|....+|...|..+...|.-++|+..|..+-++.|......+.+|.-| ..++++-|..+|.+++.+.|. ++-
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-----Dpl 415 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-----DPL 415 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-----cch
Confidence 99999999999999999999999999999999999999988889999999 899999999999999998776 588
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHH
Q 001392 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1088)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
+++.+|.+.+..+.|.+|..+|+.++...+ ++ ....+.-..++.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik--~~----------------------------------~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK--SV----------------------------------LNEKIFWEPTLN 459 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh--hc----------------------------------cccccchhHHHH
Confidence 999999999999999999999999984211 00 001123456889
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhh
Q 001392 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1088)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~ 602 (1088)
+||.++.+++.+.+|+..|+++|...|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..+-..|+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777776644
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-20 Score=198.02 Aligned_cols=364 Identities=17% Similarity=0.097 Sum_probs=279.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC--CCHHHHHH
Q 001392 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNY 273 (1088)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~ 273 (1088)
.+..++..|.++...|....|+..|..++...|-+..+|..|+.+...... .......-| .+...-..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----------~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----------LSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----------HHHHHhcCcccchHHHHHH
Confidence 366788899999999999999999999999999999999998876544322 222222223 33344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1088)
+..++....+.+.+..-.+..... ..|.....-...|.+.+...++++|+..|+...+ .+|....-.-....+++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHHHHhHHHH
Confidence 566666666667776666666543 2455667777788888888888899888888887 45555444455555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH
Q 001392 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF 432 (1088)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~ 432 (1088)
-..+-.+-.-+.+.+..++.--+++...+|+.|...++.++|+.+|+++++++|....+|..+|.-| ...+...|+..|
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 5555455455556667777777888888888888888888888888888888888888888888888 888888888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001392 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1088)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1088)
+.|+++.|. +...|+.+|..|..++...=|+-+|++++.
T Consensus 388 RrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~------------------------------------ 426 (559)
T KOG1155|consen 388 RRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE------------------------------------ 426 (559)
T ss_pred HHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh------------------------------------
Confidence 888888665 478888888888888888888888888887
Q ss_pred cCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH----
Q 001392 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV---- 588 (1088)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~---- 588 (1088)
..|.+..+|..||.||.++++.++|++.|..++........++.+||.+|.+.++..+|..+|.+.+..
T Consensus 427 -------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 427 -------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred -------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 668888888888888888888888888888888887777888888888888888888888888888873
Q ss_pred ---CCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 589 ---NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 589 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.|....+...|+..+.+.+++++|..+...++.-
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3555567777888888888888887776655443
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.3e-20 Score=192.98 Aligned_cols=446 Identities=16% Similarity=0.179 Sum_probs=351.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh--------hhhhHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK--------QREKEEHFIL 112 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~--------~~~r~~~~~~ 112 (1088)
...+++|..|+....++.|.-.|+...+.- .+ .+...+.+ + .|..... ...+......
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~k--~~----------FL~lysk~-L-a~~kk~~e~~~~~l~~~~~~~~~~~ 144 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSKK--SA----------FLRLYSKY-L-AGEKKSEEEMAELLGRLESFSRINS 144 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchHH--HH----------HHHHHHHH-H-hhhHHHHHHHHHhhccchhhhhhhh
Confidence 467899999999999999999999865421 11 11111111 1 0110000 0001111223
Q ss_pred HHHHHHHHhhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 113 ATQYYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1088)
Q Consensus 113 A~~~~~~a~~~----~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1088)
.+..+++-+.. ...++..++..|.++-..|....|+..|..++...|-+-.+|..++.+.- -+......
T Consensus 145 ~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-------~~e~~~~l 217 (559)
T KOG1155|consen 145 ELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-------DIEILSIL 217 (559)
T ss_pred HHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-------hHHHHHHH
Confidence 33344433322 23567788889999999999999999999999999999999999887653 23333444
Q ss_pred HHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 189 l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
...-|.+ ....-+.++.++..+.+.++++.-++..+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|.
T Consensus 218 ~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPY 294 (559)
T KOG1155|consen 218 VVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPY 294 (559)
T ss_pred HhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCC
Confidence 4334532 1333456788888889999999999999888 78888888888888888888 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
...-+-.+.++++-..+-.+..-+...+... +.-.++++..+|..|...++.++|+.+|+++++ .+|....+|.
T Consensus 295 Rl~dmdlySN~LYv~~~~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWT 368 (559)
T KOG1155|consen 295 RLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWT 368 (559)
T ss_pred cchhHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHH
Confidence 8888888888888887766666666655543 355668999999999999999999999999998 7889999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~ 425 (1088)
.+|.-|..+++...|+..|+++++++|.+..+|+.||..|..++...=|+-+|++++..-|+++..|..||.+| ..++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001392 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1088)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1088)
++|+++|.+++.... ....++..+|.+|-+.++..+|..+|.+.+.... ..
T Consensus 449 ~eAiKCykrai~~~d-----te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~----~e-------------------- 499 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGD-----TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE----LE-------------------- 499 (559)
T ss_pred HHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hh--------------------
Confidence 999999999998632 2468899999999999999999999999987310 00
Q ss_pred hhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC
Q 001392 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (1088)
....+....+...|+..+.+.+++++|..+...++.-++.
T Consensus 500 ------------g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 500 ------------GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred ------------cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 0033445566667999999999999999888877765443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-22 Score=221.23 Aligned_cols=312 Identities=21% Similarity=0.242 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
..+.++..+|..|..+.. -+..+|+..|.+.-...++...++..+|..|+..++|++|.++|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~---------y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQ---------YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455666667777665543 34568999999976667777788888999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
.....-....++....+--+---+.+.++..+|+. |..|..+|.||..+++++.|+.+|+++++++|....++..+|.-
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77777777777777777666556667778888988 77899999999999999999999999999999999999999988
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1088)
+..... ++.|+.+|++++..+|.+..+|+.+|.+|.++++++.|+-.|++++. .+|........+|.++++.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhh
Confidence 888777 99999999999999999998888888888888888888888888874 447777777788888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
.++|+.+|++|+. .+|.++...+..|.+++..+++++|+..++++-+.-|+...++..+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 8888888888876 5677777778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHH
Q 001392 401 KAAKIDPRDAQ 411 (1088)
Q Consensus 401 k~l~~~p~~~~ 411 (1088)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 88887776544
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-21 Score=208.33 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHH
Q 001392 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-------CETL 379 (1088)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~ 379 (1088)
....+|...+...++..|++.|..++. .. ..+.-+.+.+.+|+..|.+..++..+..+++..... ..++
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 456788888999999999999999987 33 455557788899999999999998888887754332 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
..+|..|...++++.|+.+|.+++..... ..++ .....++++.......-+.+.. ..-...-|..+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~ 368 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEA 368 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHH
Confidence 45666777788899999999997765433 2333 4444555555554444333321 34445569999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 538 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 538 (1088)
+..|+|..|+..|.+++. .+|.++..+.|.|.||..+
T Consensus 369 Fk~gdy~~Av~~YteAIk-------------------------------------------r~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIK-------------------------------------------RDPEDARLYSNRAACYLKL 405 (539)
T ss_pred HhccCHHHHHHHHHHHHh-------------------------------------------cCCchhHHHHHHHHHHHHH
Confidence 999999999999999988 5688999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHH
Q 001392 539 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1088)
Q Consensus 539 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1088)
|.+..|+.-.+.+++++|+.+.+|++-|.++..+.+|+.|++.|.+++..+|++.++...+..+...+........+.++
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888888887654333333444444
No 41
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.91 E-value=2.2e-18 Score=188.51 Aligned_cols=449 Identities=15% Similarity=0.154 Sum_probs=331.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...++..+.-++..++|...++..+.+++..|.++..+..+|..+...|+-++|......+++.++.+ ...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHH
Confidence 34677778888889999999999999999999999999999999999999999999999999999988 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
....+|++|+.+|..|+.++|+|...|.-++.+..+.++ ++-....-.+.++..|.....|..++..+...|++..|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 88888888888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHH
Q 001392 288 EQLTETALAVTNHGPTK-----SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1088)
..+.+...+.....+.. .++......+....|.+++|++.+..--. ..-+........+.+++..+++++|.
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 99998888765433322 34455566777788888888887765443 11223334556788899999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001392 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~ 440 (1088)
..|...+..+|++...+..+-.++....+.-+++ ..|...-+..|.. .....++.-. ....+.. .+.+.+...-
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~---~vdkyL~~~l 315 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKE---IVDKYLRPLL 315 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHH---HHHHHHHHHh
Confidence 9999999999999888888877776444444454 4555444444432 2223333322 1122222 2222222211
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC-----
Q 001392 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG----- 515 (1088)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 515 (1088)
..|. +.+..++-.+|-.-. .. .++++.+. .+.+.+...+
T Consensus 316 ~Kg~---p~vf~dl~SLyk~p~---k~-~~le~Lvt-----------------------------~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 316 SKGV---PSVFKDLRSLYKDPE---KV-AFLEKLVT-----------------------------SYQHSLSGTGMFNFL 359 (700)
T ss_pred hcCC---CchhhhhHHHHhchh---Hh-HHHHHHHH-----------------------------HHHhhcccccCCCcc
Confidence 1111 222222222222111 11 12222221 1111111111
Q ss_pred --CCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh
Q 001392 516 --NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593 (1088)
Q Consensus 516 --~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 593 (1088)
...+.+....+.++.++.-+...|+++.|..+...++...|..++.|+.-|.++...|++++|..++..+.+++-.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 011233345667788899999999999999999999999999999999999999999999999999999999987777
Q ss_pred hHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 594 NALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
.+-...+...++.++.++|..+..+..+.+
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 777788888999999999999988766544
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-18 Score=191.52 Aligned_cols=387 Identities=20% Similarity=0.187 Sum_probs=312.6
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 001392 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLG 417 (1088)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~~~~~~~la 417 (1088)
+...+|-.+...+...|++..+.++|++++...-...+.|+.++.+|...|.-..|+.+++..+... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4455677788888999999999999999998877788999999999999999999999999999988 88898888888
Q ss_pred HHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcchhhhhc
Q 001392 418 ELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG-----------EFESAHQSFKDALGDGIWLTLL 484 (1088)
Q Consensus 418 ~l~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~l~~al~~~~~~~~~ 484 (1088)
.++ ..+.+++++.+..+++...........+..+..+|.+|...- ...++++.++++++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-------- 472 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-------- 472 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh--------
Confidence 877 889999999999999997655555566788888888876542 24556666666666
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC-CcHHHHH
Q 001392 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYL 563 (1088)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~ 563 (1088)
..|.++.+.++++.-|..+++...|....+.+++.++ +.+.+|.
T Consensus 473 -----------------------------------~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh 517 (799)
T KOG4162|consen 473 -----------------------------------FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH 517 (799)
T ss_pred -----------------------------------cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence 5678889999999999999999999999999999955 5689999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCC-------------------
Q 001392 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD------------------- 624 (1088)
Q Consensus 564 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------- 624 (1088)
.++.++...+++..|+.+...++.-.|.|.........+-...++.++|+.+....+....
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 9999999999999999999999999988766555555555555665555555444332211
Q ss_pred -------------------------------------------CCCh--H----HHHHhhhHHHHHHhhhhhcChhHHHH
Q 001392 625 -------------------------------------------GKDS--Y----ATLSLGNWNYFAALRNEKRAPKLEAT 655 (1088)
Q Consensus 625 -------------------------------------------~~d~--~----a~~~lg~~~y~~~~~~~~~~~~~~~~ 655 (1088)
.++. + .|...+.. |... +
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~-~~~~------------~ 664 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADL-FLLS------------G 664 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHH-HHhc------------C
Confidence 0000 0 01111111 2222 6
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHH
Q 001392 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735 (1088)
Q Consensus 656 ~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~ 735 (1088)
+.+.|..++.++-.++|..++.++..|.++...|...+|...|..++..+| +++.+...+|.++.+.|+..-|..
T Consensus 665 ~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-----~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 665 NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-----DHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhCCcchHHH
Confidence 777888888888888999999999999999999999999999999999888 778889999999999998888888
Q ss_pred --HHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhH
Q 001392 736 --MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 736 --~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
++..+++. ++.++.+|++||.++.+.|+.+.|..+|..++++.+.+|...|.
T Consensus 740 ~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 740 RSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 88888888 77888999999999999999999999999999999888876553
No 43
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.90 E-value=1.4e-19 Score=197.70 Aligned_cols=486 Identities=16% Similarity=0.122 Sum_probs=344.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
++..+.-.+..++|...+++.+.++.. .|..++++...|..+...|+-++|..+...++. .++....+|..+|.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---NDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhc---cCcccchhHHHHHH
Confidence 333344455677888888888888863 466678889999999999999999999999987 77888889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
++....+|++|+.+|..++.+.|+|..+|..++.+..++++++-....-.+.++..|..-..|+.++..+ ..|++..|.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhh
Q 001392 430 DAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1088)
..++...+.......... .+.......++...|.+++|++.+..--..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----------------------------- 214 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----------------------------- 214 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-----------------------------
Confidence 998888776542111111 244455567777888888888887654331
Q ss_pred hhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 001392 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEA 585 (1088)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~l~~a 585 (1088)
--+........+.++..++++++|..+|...+..+|++...+..+-.++..-.+.-++. ..|...
T Consensus 215 --------------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 215 --------------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred --------------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11234455567889999999999999999999999999988888877775333333344 444443
Q ss_pred HHHCCCChh--------------------------------HHHhhhhhhhcccchHHHHHHHHHhh-------hcC---
Q 001392 586 LKVNGKYPN--------------------------------ALSMLGDLELKNDDWVKAKETFRAAS-------DAT--- 623 (1088)
Q Consensus 586 l~~~p~~~~--------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~--- 623 (1088)
-+..|.... +...+-.+|-. ... ..++++.+ ...
T Consensus 281 s~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k-~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEK-VAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred hhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhH-hHHHHHHHHHHHhhcccccCC
Confidence 333332211 11111111111 000 01222221 100
Q ss_pred C----C--CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHH
Q 001392 624 D----G--KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (1088)
Q Consensus 624 ~----~--~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 697 (1088)
+ + ..+.+ .++.. |+...+.... |+++.|..+.+.++..-|+-+..+...|.++.+.|.+++|..+
T Consensus 357 ~~~D~~~~E~Ptt--llWt~-y~laqh~D~~------g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 357 NFLDDGKQEPPTT--LLWTL-YFLAQHYDKL------GDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred CcccccccCCchH--HHHHH-HHHHHHHHHc------ccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0 0 01111 11222 3333222222 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHH--HHHHHHHccCHHHHHHHHHHHHHHhcCCC-C----------HHHHHHHHHHHHhhc
Q 001392 698 FTQVQEAASGSVFVQMPDVWIN--LAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----------AQILLYLARTHYEAE 764 (1088)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~--la~~~~~~g~~~~Ai~~~~~al~~~~~~~-~----------~~~l~~La~~~~~~g 764 (1088)
+..+.+.+ .++.++| .|...++.++.++|.++.-. |.... + ......-|.+|+++|
T Consensus 428 l~ea~elD-------~aDR~INsKcAKYmLrAn~i~eA~~~~sk----FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~ 496 (700)
T KOG1156|consen 428 LDEAQELD-------TADRAINSKCAKYMLRANEIEEAEEVLSK----FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQN 496 (700)
T ss_pred HHHHHhcc-------chhHHHHHHHHHHHHHccccHHHHHHHHH----hhhcccchhhhHHHhhhHHHhHhhhHHHHHHH
Confidence 99999975 5666666 68888999999999988544 42222 1 122223488999999
Q ss_pred cHHHHHHHHHHHHHhCCCC--hhHHhHHHHHHHHHHHhhhhh------cCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001392 765 QWQDCKKSLLRAIHLAPSN--YTLRFDAGVAMQKFSASTLQK------TRRTADEVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 765 ~~~~A~~~l~~al~~~p~~--~~~~~nla~~~~~~~~~~l~~------~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
++..|++-|..+-+.+-.- ...-|+. .|+.++.-+++-. ..++-+.. ......|++++-.|.+.+
T Consensus 497 k~g~ALKkfh~i~k~~~~~~~dqfDfht-yc~rk~tlrsYv~ll~~~d~L~~~p~y---~~Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 497 KLGLALKKFHEIEKHYKTWSEDQFDFHT-YCMRKGTLRSYVELLEWEDNLRSSPYY---LRAAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhHHH-HHHhcCcHHHHHHHHHHHHhhccChHH---HHHHHHHHHHHHHHhcCc
Confidence 9999999888877776543 3334443 3456665544332 33333333 334566888888887654
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.5e-21 Score=214.92 Aligned_cols=204 Identities=20% Similarity=0.200 Sum_probs=102.3
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
+|..+..|..+|.||..+++++.|++.|++++.++|.+..+|..+|.-+.....++.|..+|+.++..+|.+..+|+.+|
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.+|+++++++.|.-.|++++.++|. ....++.+|.+ +... |+.++|+.+|++|+.++|.|+...+.
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~-~~~~------------k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRI-QHQL------------KRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHH-HHHh------------hhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 5555555555555555555555444 33334444444 4444 44555555555555555555555555
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 681 la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
.|.++...+++++|+..++++.+..| +...+++.+|.+|.++|+.+.|+..|--|+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP-----~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVP-----QESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555555555555555555554444 44444455555555555555555544444444
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.3e-20 Score=213.95 Aligned_cols=301 Identities=20% Similarity=0.119 Sum_probs=232.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGIG 204 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~lg 204 (1088)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...+... ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999988543321 24678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH
Q 001392 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF 279 (1088)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~ 279 (1088)
.+|...|+++.|...|.++++.+|.+..++..++.++...|+ +++|+..+.+++...|.+.. .+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 99999999999988876532 3455677777
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhHhhHHHHHHHcCCH
Q 001392 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 358 (1088)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~ 358 (1088)
..|+++.|+.++.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 7777777777777777543 445567777777777777777777777777752 2222 34456677777777777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 001392 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI---SSDTGAALDAFKTA 435 (1088)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~---~~~~~~A~~~~~~a 435 (1088)
++|+..+++++...|+...+ ..++.++...|++++|+.+|.+++...|++......+...+. .|+..+++..++++
T Consensus 266 ~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 77777777777777765433 677777777777777777777777777776655444444331 34666777777666
Q ss_pred HHH
Q 001392 436 RTL 438 (1088)
Q Consensus 436 ~~~ 438 (1088)
++.
T Consensus 345 ~~~ 347 (389)
T PRK11788 345 VGE 347 (389)
T ss_pred HHH
Confidence 653
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.1e-18 Score=180.89 Aligned_cols=499 Identities=16% Similarity=0.204 Sum_probs=397.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
..|+..++.+.-+...|+..|.--..++++..|...|+++|..+..+...|+..+.+-++.+....|..++++++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34566666666777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1088)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1088)
. ...|+....+--.+|+...|.++|++.+...| +..+|......-+..+. ++.|...|++.+-.+| ....|...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP-~v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHP-KVSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecc-cHHHHHHH
Confidence 8 67788888888999999999999999999998 56788888888888777 9999999999988886 45678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1088)
+..-...|+...+..+|+.++............+...|..-..+..++.|..+|.-++...|.+. ....+-.+...-.+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r-aeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR-AEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHH
Confidence 99999999999999999999987766666666777788888889999999999999998654321 12223333333334
Q ss_pred cCCH---HHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHH
Q 001392 355 LGDF---RSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---------AQAFIDLG 417 (1088)
Q Consensus 355 ~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~---------~~~~~~la 417 (1088)
-|+. +.++ -.|+..+..+|.+.++|+....+....|+.+.-.+.|++++...|.. ...|++.+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 4543 3343 35778888999999999999999999999999999999999887754 23444444
Q ss_pred HHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhh
Q 001392 418 ELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495 (1088)
Q Consensus 418 ~l~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 495 (1088)
..- ...+.+.+..+|+.++++.|... -.-+.+|...+....++.+...|.+.+-.++..+|
T Consensus 373 lyeEle~ed~ertr~vyq~~l~lIPHkk-FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP---------------- 435 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDLIPHKK-FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP---------------- 435 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC----------------
Confidence 433 67899999999999999887632 22367888889999999999999999999998665
Q ss_pred hhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCh
Q 001392 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575 (1088)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 575 (1088)
...+.-....+-.++++++....+|++.+.-.|.+..+|...|.+-..+|+.
T Consensus 436 ----------------------------K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 436 ----------------------------KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred ----------------------------chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 3344455566677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCChh--HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcCh---
Q 001392 576 QLSIELVNEALKVNGKYPN--ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP--- 650 (1088)
Q Consensus 576 ~~A~~~l~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~--- 650 (1088)
+.|..+|.-++....-+.. +|-.+..+-...|.++.|..+|++.+...+. .-++++.+.. -..... .....
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvWisFA~f-e~s~~~-~~~~~~~~ 563 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVWISFAKF-EASASE-GQEDEDLA 563 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHHHhHHHH-hccccc-cccccchh
Confidence 9999999999876543332 6677888888999999999999999998654 2355555543 111111 11110
Q ss_pred --hHHHHHHHHHHHHHHHHHh
Q 001392 651 --KLEATHLEKAKELYTRVIV 669 (1088)
Q Consensus 651 --~~~~~~~~~A~~~~~~al~ 669 (1088)
.........|..+|+.+..
T Consensus 564 ~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 564 ELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhcchhHHHHHHHHHHHHHH
Confidence 0123466677777776654
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.1e-20 Score=217.84 Aligned_cols=272 Identities=19% Similarity=0.176 Sum_probs=152.5
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 423 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~ 423 (1088)
..+..|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------ 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------
Confidence 34455666666666666777777666666666666666666666666666666666666553221110
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhh
Q 001392 424 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (1088)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1088)
....++..+|.++...|+++.|+.+|.+++.
T Consensus 105 ----------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~--------------------------- 135 (389)
T PRK11788 105 ----------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVD--------------------------- 135 (389)
T ss_pred ----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc---------------------------
Confidence 0023344555555666666666666655554
Q ss_pred hhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHcCChHHH
Q 001392 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLS 578 (1088)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A 578 (1088)
..|....++..++.++...|++++|+..+..++...|... ..+..++.++...|++++|
T Consensus 136 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 136 ----------------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred ----------------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 2233445555566666666666666666666655554431 2344555555566666666
Q ss_pred HHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHH
Q 001392 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 658 (1088)
Q Consensus 579 ~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 658 (1088)
+.+|.+++..+|.+..++..+|.++...|++++|+..|++++...|.....++..++.+ |... |+++
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~ 266 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEA 266 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHH
Confidence 66666666666655555555666666666666666666555554443223334444555 5544 5555
Q ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001392 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 659 ~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p 706 (1088)
+|+..+++++..+|+...+ ..++.++...|++++|+.+|.+++...|
T Consensus 267 ~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 5555555555555544332 5555555555555555555555555554
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=1.1e-19 Score=182.86 Aligned_cols=344 Identities=18% Similarity=0.187 Sum_probs=277.7
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.++.-++.+|..++..|++..|+..|..++..+|++..+++.+|.+|+..|+-..|+.-+.+++++.|+. ..+++..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHHh
Confidence 466777889999999999999999999999999999999999999999999999999999999999999999 7789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
|.++.++|.++.|..-|..++..+|++... ...++.+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------- 155 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------- 155 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------------------------------------
Confidence 999999999999999999999999965432 2222111100
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
..+......++..|++..|+.+....+. ..|..+..+...+.+|...|....
T Consensus 156 -------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 156 -------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred -------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHH
Confidence 1122233345567888888888888887 667788888899999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001392 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~ 440 (1088)
||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-. |++..++.+
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----------------YKklkKv~K 271 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----------------YKKLKKVVK 271 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654432 222221111
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCC
Q 001392 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (1088)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1088)
. ..-+.-....++|.+++...++.+...|. .
T Consensus 272 ~----------les~e~~ie~~~~t~cle~ge~vlk~ep~---------------------------------------~ 302 (504)
T KOG0624|consen 272 S----------LESAEQAIEEKHWTECLEAGEKVLKNEPE---------------------------------------E 302 (504)
T ss_pred H----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------c
Confidence 1 00122234557788888888888874321 1
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
.+........+..|+..-+++.+|+..+..+|..+|+++.++...+..|.....|+.|+..|++++..++++..+...
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 222334445567788899999999999999999999999999999999999999999999999999999998776543
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=4.7e-20 Score=185.60 Aligned_cols=332 Identities=17% Similarity=0.215 Sum_probs=279.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHH
Q 001392 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (1088)
Q Consensus 38 ~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~ 117 (1088)
+..+-.+.++..++..|++.+|+..+..+++.+|+. ..+++.-+.+|+.+|+.. -|+.-|
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------Y~aifrRaT~yLAmGksk-----------~al~Dl 95 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------YQAIFRRATVYLAMGKSK-----------AALQDL 95 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------HHHHHHHHHHHhhhcCCc-----------cchhhH
Confidence 455678899999999999999999999999887754 347788899999999987 789999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCChHHHH
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---------------ALLGQACVEFNRGRYSDSL 182 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~la~~~~~~g~~~~Al 182 (1088)
.+++.+.|+...+.+.+|.+++++|.+++|..-|+.++..+|++.. .+......++..|++..|+
T Consensus 96 ~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 96 SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 9999999999999999999999999999999999999999996521 2344455667789999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
.+...++++.|.+ ..++...+.||...|....|+.-+..+-++..++.+.++.++.+++..|+ ...++..++.+++
T Consensus 176 ~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLK 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHc
Confidence 9999999999999 78899999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCc
Q 001392 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEF 341 (1088)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~ 341 (1088)
++|++-..+-.. ....+..+.++. +......++|.+++...++.++.-+. .+-.
T Consensus 252 ldpdHK~Cf~~Y-------KklkKv~K~les------------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 252 LDPDHKLCFPFY-------KKLKKVVKSLES------------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cCcchhhHHHHH-------HHHHHHHHHHHH------------------HHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 999987544321 112222222222 23345678899999999999873222 2223
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
...+..+..|+...+++.+|+..+..++..+|+++.++...+.+|+-...|+.|+..|+++.+.++++..+.-.+-.
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 33455678889999999999999999999999999999999999999999999999999999999998777655433
No 50
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-19 Score=195.69 Aligned_cols=471 Identities=16% Similarity=0.140 Sum_probs=295.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
....|...+..|+|+.|+.+|..++.++|.|...+.....+|...|+|.+|+.--.+.+.++|.. +..|..+|..+.-+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
|+|++|+..|.+.|+.+|+|.....+|+.++... + .+...|. .|..+..++..-... +-.....
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~-----~-~~~~~~~--------~p~~~~~l~~~p~t~--~~~~~~~ 147 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED-----Y-AADQLFT--------KPYFHEKLANLPLTN--YSLSDPA 147 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH-----H-Hhhhhcc--------CcHHHHHhhcChhhh--hhhccHH
Confidence 9999999999999999999999999999888222 1 1122221 222222221110000 0001111
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH-----HHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-----ALTNF 365 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~ 365 (1088)
|..++......|.....+..- ....+|.-.+..+-. . .....+......+.... .....
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d-------~r~m~a~~~l~~~~~-------~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLND-------PRLMKADGQLKGVDE-------L--LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred HHHHHHHhhcCcHhhhccccc-------HHHHHHHHHHhcCcc-------c--cccccccccCCCCCCcccccCCCCCcc
Confidence 122222222222221111111 111111111111000 0 00000000000000000 00000
Q ss_pred HHHH--HhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc
Q 001392 366 EKVL--EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA 442 (1088)
Q Consensus 366 ~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~ 442 (1088)
.... .....-......+|....+..++..|+..|.+++.++ .+...+.+.+.+| ..+.+...+.....+++.....
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 0000 0000112345567777777788888888888888888 7777777777777 7777777776666665543221
Q ss_pred CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCC
Q 001392 443 GEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (1088)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1088)
... .-...+..+|..|...++++.|+.+|.+++....
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R----------------------------------------- 329 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR----------------------------------------- 329 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-----------------------------------------
Confidence 000 0123334466677778888888888888776210
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
. ..++......+++........-.+|.-......-|..++..|+|..|+..|.+++..+|+++.++.+.+
T Consensus 330 ---t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 330 ---T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred ---C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 0 334444455666666666666666766665666677777788888888888888888888888888888
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.+|.+.|.+..|+...+.++++.|. ..-+++.-|.+ +..+ ++|++|++.|.+++..+|.+..+..+
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 8888888888777777777777665 55566666766 6666 77888888888888888887777777
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 001392 681 AGVVLAEKGQFDVSKDLFTQ 700 (1088)
Q Consensus 681 la~~l~~~g~~~~A~~~~~~ 700 (1088)
+..++..+.......++.+.
T Consensus 466 ~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 466 YRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHhhcCCCHHHHHHh
Confidence 77766654333333444444
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.8e-18 Score=191.42 Aligned_cols=433 Identities=18% Similarity=0.145 Sum_probs=341.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1088)
+++.+|-.+...+...|+|..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |.++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5778888889999999999999999999998887888999999999999999999999999999988 77767777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhhch--------HHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
..|+...+.+++++.+-.+++.... -.+.++..+|.+|...-. .....++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 8888999999999999999998432 135567777877765422 123678999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
.++++.-|...++...|......++... ....+.+|..++.++...+++..|+.+...++... +.+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhh
Confidence 9999999999999999999999999863 24456899999999999999999999999999854 344444555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH---------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH---------IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~---------~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~ 421 (1088)
+-...++.++|+..+...+........+...++. +....++..+|+..+.++ ..+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l--------------s~l~a 621 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL--------------SSLVA 621 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH--------------HHHHH
Confidence 6677899999999999988876544443333331 111111222222222222 11110
Q ss_pred cCCHHHHHHHHHHHHHHHHhc----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001392 422 SSDTGAALDAFKTARTLLKKA----GEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1088)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 493 (1088)
.+...+. +... +|.. +... ...+|...+..+...++.++|..++.++..
T Consensus 622 -~~~~~~~--se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----------------- 678 (799)
T KOG4162|consen 622 -SQLKSAG--SELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----------------- 678 (799)
T ss_pred -hhhhhcc--cccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-----------------
Confidence 0000000 0000 1110 0000 135677788889999999999999999887
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 001392 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1088)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1088)
..|..+.+++..|.++...|+..+|...|..++.++|+++.+...+|.++...|
T Consensus 679 --------------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 679 --------------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred --------------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 457788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHH--HHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCC
Q 001392 574 NLQLSIE--LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 626 (1088)
Q Consensus 574 ~~~~A~~--~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 626 (1088)
+..-|.. ++..+++++|.++++|+.+|.++.+.|+...|..+|..++++.++.
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 9888888 9999999999999999999999999999999999999999987663
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.3e-16 Score=167.67 Aligned_cols=474 Identities=16% Similarity=0.137 Sum_probs=370.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001392 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1088)
.+.|+..+..+.-+...|+..|.--..++++..|..+|+++|..+..+ ..+|+..+.+-++......|..+|.+++.+-
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 355677777777788999999999999999999999999999999887 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001392 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1088)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 307 (1088)
|.-...|+....+--..|+ +.-|.++|.+.+...|+ ..+|......-.+-+..+.|..+|++.+-.. .....
T Consensus 138 PRVdqlWyKY~ymEE~LgN---i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~H----P~v~~ 209 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGN---IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVH----PKVSN 209 (677)
T ss_pred chHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheec----ccHHH
Confidence 9999999998888888888 99999999999999885 5688888888899999999999999988543 34578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN--CETLKALGHI 385 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~ 385 (1088)
|...++.-...|+..-|..+|..++..+++.......+...|..-..+..++.|..+|.-++..-|.+ ...+..+...
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 89999999999999999999999999776655555556667777778889999999999999998887 4455544444
Q ss_pred HHhcCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC----HHHHH
Q 001392 386 YVQLGQI---EKAQ-----ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP----IEVLN 452 (1088)
Q Consensus 386 ~~~~g~~---~~A~-----~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~ 452 (1088)
--+-|+. +.++ --|++.+..+|-+.++|+.+..+. ..|+.+.-.+.|++|+...|....... ..+|.
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 4455653 3333 356778889999999999999999 889999999999999986554221111 11222
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 453 NIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 453 ~l~~-~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
+.+. .-....+.+.+.++|+.++..-|- ..-..+.+|...
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~lIPH---------------------------------------kkFtFaKiWlmy 410 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDLIPH---------------------------------------KKFTFAKIWLMY 410 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcCc---------------------------------------ccchHHHHHHHH
Confidence 2221 123568888899999988885321 122356778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHH
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
|.....+.+...|.+++-.++..+|.. ..+-....+-.++++++....+|.+.+..+|.+..+|..+|.+-..+|+++.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 888888899999999999999988874 4445555667788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHH
Q 001392 612 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1088)
Q Consensus 612 A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~ 683 (1088)
|..+|.-+++...- +..-+ |... |... +...|.+++|..+|++.|...+... +|...|.
T Consensus 490 aRaifelAi~qp~l-dmpel--lwka-YIdF--------Ei~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 490 ARAIFELAISQPAL-DMPEL--LWKA-YIDF--------EIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHHHhcCccc-ccHHH--HHHH-hhhh--------hhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 99999988875432 33322 2222 3332 1223778888888888887776544 4444443
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-17 Score=171.63 Aligned_cols=313 Identities=16% Similarity=0.093 Sum_probs=252.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001392 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1088)
+.+.+..++...|...+--+-. ...-+.++..+..+|.+++..|++.+|+..|+++.-++|.+...+-..|.++...|+
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC
Confidence 3334444444444444433221 114567778888899999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001392 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (1088)
++.-..+...++........-|+.-+.++ ..+++..|+.+-+++++..+. ....+...|.++...|+.++|+-.
T Consensus 282 ~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHHHH
Confidence 99888888888888766666666666665 888999999999999887554 367788889999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHH
Q 001392 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550 (1088)
Q Consensus 471 l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1088)
|+.+.. ..|.....|..|..+|...|.+.+|...-..
T Consensus 357 FR~Aq~-------------------------------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 357 FRTAQM-------------------------------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHh-------------------------------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 999887 5567888899999999999999999999999
Q ss_pred HHHHcCCcHHHHHHHH-HHH-HHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001392 551 ILFKYQDYVDAYLRLA-AIA-KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1088)
Q Consensus 551 ~l~~~p~~~~~~~~la-~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~ 628 (1088)
++...|.++.++..+| .++ ..-.--++|.+++++++.++|....+...++.++...|.+..++..+++.+...+ |.
T Consensus 394 ~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~ 471 (564)
T KOG1174|consen 394 TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DV 471 (564)
T ss_pred HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--cc
Confidence 9999999988888886 333 3334457799999999999999999999999999999999999999999988876 55
Q ss_pred HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc
Q 001392 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1088)
Q Consensus 629 ~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~ 688 (1088)
..+..||++ +... +.+.+|+..|..++.++|++..+.-++-.+-...
T Consensus 472 ~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 472 NLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 667779998 8877 8899999999999999999888777765554433
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.4e-17 Score=170.31 Aligned_cols=416 Identities=14% Similarity=0.093 Sum_probs=319.2
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001392 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1088)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1088)
.+...+..+..+.+|...++-+.|+........ ....+.....++..+..-++-.++.-.+..++...|- ++-
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~----t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~---aL~ 165 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPP----TLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM---ALQ 165 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCc----cccchhHHHHHHHHHhccccccHHHHhhhHHHHhcch---HHH
Confidence 455667788899999999999999988766542 2334444555666666666655666666666665443 332
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001392 381 ALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQAFIDL-GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 457 (1088)
Q Consensus 381 ~la~~~~-~~g~~~~A~~~~~k~l~~~p~~~~~~~~l-a~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 457 (1088)
.++.++. ..+-++.+-... .++...|..+..|..+ +... ..++...|...+-.+... ...+.+..++..+|.+
T Consensus 166 ~i~~ll~l~v~g~e~~S~~m-~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~---~~lr~NvhLl~~lak~ 241 (564)
T KOG1174|consen 166 VIEALLELGVNGNEINSLVM-HAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN---TTLRCNEHLMMALGKC 241 (564)
T ss_pred HHHHHHHHhhcchhhhhhhh-hheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh---ccCCccHHHHHHHhhh
Confidence 2222221 112222222221 2234455554444332 2222 344444444433322211 1223357889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHh
Q 001392 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1088)
Q Consensus 458 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1088)
++..|++.+|+..|+++.. .+|......-..|.++..
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~-------------------------------------------~dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLC-------------------------------------------ANPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred hhhhcCchHHHHHHHHHhh-------------------------------------------CChhhhhhHHHHHHHHHh
Confidence 9999999999999999887 567888888889999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHH
Q 001392 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1088)
.|+++.-..+...++.+......-|+.-+......+++..|+.+..+++..+|.+..++...|.++...|+.++|.-.|+
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 99999999999888888877778888888889999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHH-HHHHhc-CCchHHH
Q 001392 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEK-GQFDVSK 695 (1088)
Q Consensus 618 ~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la-~~l~~~-g~~~~A~ 695 (1088)
.+..+.|. +.-.+-.|..+ |+.. |.+.+|.-.-+.++..-|.+..++..+| .+++.. .--++|.
T Consensus 359 ~Aq~Lap~-rL~~Y~GL~hs-YLA~------------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 359 TAQMLAPY-RLEIYRGLFHS-YLAQ------------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HHHhcchh-hHHHHHHHHHH-HHhh------------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 99998876 66777778888 8888 9999999999999999999999998886 555544 3457899
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
.++++.+...| ....+...++.++...|.+..+|.++++.|..| +|......||.++...+.+++|+.+|..
T Consensus 425 kf~ek~L~~~P-----~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~---~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 425 KFAEKSLKINP-----IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF---PDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHhhhccCC-----ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc---cccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999998 677888999999999999999999999999975 5678899999999999999999999999
Q ss_pred HHHhCCCChhHHhHHHH
Q 001392 776 AIHLAPSNYTLRFDAGV 792 (1088)
Q Consensus 776 al~~~p~~~~~~~nla~ 792 (1088)
|+.++|++....-.+-.
T Consensus 497 ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 497 ALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHhcCccchHHHHHHHH
Confidence 99999998665544433
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.9e-16 Score=160.39 Aligned_cols=452 Identities=15% Similarity=0.169 Sum_probs=278.0
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHH
Q 001392 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251 (1088)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~ 251 (1088)
+....+|..|+.+++-.+..+......+...+|.|++++|+|++|...|.-+.+.+.-+...+++|+.+++..|. |.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HH
Confidence 345567777777776666554444345566777777777777777777777766555566667777766666666 66
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 252 KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1088)
Q Consensus 252 ~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1088)
+|.....+ .|+++.....+-. +.++.|+-++-.. |...
T Consensus 109 eA~~~~~k----a~k~pL~~RLlfh-------------------------------------lahklndEk~~~~-fh~~ 146 (557)
T KOG3785|consen 109 EAKSIAEK----APKTPLCIRLLFH-------------------------------------LAHKLNDEKRILT-FHSS 146 (557)
T ss_pred HHHHHHhh----CCCChHHHHHHHH-------------------------------------HHHHhCcHHHHHH-HHHH
Confidence 65554433 2333322222222 2223333332222 2222
Q ss_pred HHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 001392 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1088)
Q Consensus 332 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~ 411 (1088)
++ +...-...++.+.+..-.|++|+..|.+++..+|+.......++.||.++.-++-+.+++.-.+...|+++.
T Consensus 147 Lq------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 147 LQ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred Hh------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 22 122345667888888888999999999999999988888889999999999999999999999999999988
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001392 412 AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (1088)
Q Consensus 412 ~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 488 (1088)
+....+... ..|+..++ -..... .+.... |..+..+++.-+-
T Consensus 221 A~NLkacn~fRl~ngr~ae~--E~k~la---dN~~~~------------------~~f~~~l~rHNLV------------ 265 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAED--EKKELA---DNIDQE------------------YPFIEYLCRHNLV------------ 265 (557)
T ss_pred HHHHHHHHHhhhhccchhHH--HHHHHH---hccccc------------------chhHHHHHHcCeE------------
Confidence 887776654 33333222 111111 111000 1111111110000
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001392 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 568 (1088)
--.+-+.|++.+-.++..- +++..+|+..
T Consensus 266 ------------------------------------------------vFrngEgALqVLP~L~~~I---PEARlNL~iY 294 (557)
T KOG3785|consen 266 ------------------------------------------------VFRNGEGALQVLPSLMKHI---PEARLNLIIY 294 (557)
T ss_pred ------------------------------------------------EEeCCccHHHhchHHHhhC---hHhhhhheee
Confidence 0012233333333333322 2445555555
Q ss_pred HHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccc-------hHHHHHHHHHhhhcCCCC-ChHHHHHhhhHHHH
Q 001392 569 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD-------WVKAKETFRAASDATDGK-DSYATLSLGNWNYF 640 (1088)
Q Consensus 569 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~-d~~a~~~lg~~~y~ 640 (1088)
|.++++..+|+.+++. ++|..|.-+...|.++...|+ ..-|...|+-+=...... .....-+++.. ++
T Consensus 295 yL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FF 370 (557)
T ss_pred ecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HH
Confidence 5566666666555443 455555555555555555544 222333333221111111 12233456666 77
Q ss_pred HHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 001392 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720 (1088)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 720 (1088)
.. .+++..+.++..+-...-++....++++.+.+..|++.+|.++|-++..-.- .+.......|
T Consensus 371 L~------------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~L 434 (557)
T KOG3785|consen 371 LS------------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSML 434 (557)
T ss_pred HH------------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHH
Confidence 77 8899999998888887778888888999999999999999999988754321 1334455678
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 721 a~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
|.||...|++.-|..+| ++..........+..++..||+.+.+=-|.+.|...-.++|+.
T Consensus 435 ArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999999999999886 4432122225667788999999999999999999888888864
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.8e-19 Score=196.40 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
..++.+++..|++++|+.++.+.+... .+|.++..|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 356999999999999999997765421 146788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHH
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
|.+....++++.|+..|++++..++..+..+..++.+ ...+++.+|+.++..+....+ ++..+..+..++...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999888 799999999999999887664 57777888888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCC
Q 001392 612 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (1088)
Q Consensus 612 A~~~~~~al~~~~-~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~ 690 (1088)
+...+..+....+ ..+...+..+|.+ |... |++++|+.+|++++..+|+++.+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776432 3467788889998 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHH
Q 001392 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (1088)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~ 770 (1088)
.+++..++.......| .++..|..+|.+|..+|++++|+.+|+++++. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 77889999999999999999999999999998 7889999999999999999999999
Q ss_pred HHHHHHHHh
Q 001392 771 KSLLRAIHL 779 (1088)
Q Consensus 771 ~~l~~al~~ 779 (1088)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999888753
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2e-17 Score=165.88 Aligned_cols=418 Identities=16% Similarity=0.129 Sum_probs=302.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHH-HHHhC--CCC-----
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKR-ALQVH--PSC----- 195 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~-al~~~--p~~----- 195 (1088)
+.++..|++...|+...+++..+++..|.+-.+|...++++-..- +--.|...++. .+... |..
T Consensus 8 ~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~p 87 (478)
T KOG1129|consen 8 YFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKTP 87 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccCC
Confidence 567899999999999999999999999999999999988876532 22244444432 22221 111
Q ss_pred -------hhHH-----------HHHHHHH-HHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhchHHhHHHHH
Q 001392 196 -------PGAI-----------RLGIGLC-RYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGM 254 (1088)
Q Consensus 196 -------~~~~-----------~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~Al 254 (1088)
...+ ....+.. -.+-|-.+.|+..-..+-.-.|- ...-...++...+..+..+
T Consensus 88 ~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG------ 161 (478)
T KOG1129|consen 88 FTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDG------ 161 (478)
T ss_pred CCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCc------
Confidence 0000 0000011 11223344444322222111110 0011122232222222111
Q ss_pred HHHHHHHHhCCC----CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCCc---hHHHHHHHHHHHhcCCHH
Q 001392 255 EKMQRAFEIYPY----CAMA-LNYLANHFFFTGQHFLVEQLTETALAVTN----HGPTK---SHSYYNLARSYHSKGDYE 322 (1088)
Q Consensus 255 ~~~~~al~~~p~----~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~---~~~~~~la~~~~~~g~~~ 322 (1088)
-|-.+-.++|. .+.+ -...-.+|+..++...|..+....+...- ..... -..-..+|.||.+.|.+.
T Consensus 162 -~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r 240 (478)
T KOG1129|consen 162 -KFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPR 240 (478)
T ss_pred -ceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChh
Confidence 12222233332 2222 22233456667777777766555543211 11111 122345899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1088)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~ 402 (1088)
.|.+.++.++.. ...+..+..|+.+|.+..+...|+..|...+...|.++..+..++.++..+++.+.|.++|+.+
T Consensus 241 ~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 241 RAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred hhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 999999999964 4466778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001392 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1088)
Q Consensus 403 l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~ 481 (1088)
++.+|.+..+.-.++.-| ..++++-|+.+|++.+.+-- .++++++|+|.|++..++++-++..|++++....
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-----~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-- 389 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-----QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-- 389 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc--
Confidence 999999999999999988 89999999999999998733 3589999999999999999999999999997421
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH
Q 001392 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (1088)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (1088)
.+.....+|+|+|.+....|++..|...|+-++..+|++..+
T Consensus 390 --------------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 390 --------------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred --------------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 234467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhc
Q 001392 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1088)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~ 605 (1088)
+++|+.+..+.|+..+|..+++.+....|.-.+..++++.+-..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 99999999999999999999999999999988877777655443
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=2.2e-16 Score=181.06 Aligned_cols=303 Identities=14% Similarity=0.051 Sum_probs=235.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
.+..|.+.+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..+|.++.+..|++...+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 36678889999999999999999999999888899999999999999999999999999999988445666679999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1088)
|+++.|...++++++..|+++.++..++.++...|+ ++.|+..+.+..+..+.++.... .....+...+....
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999887554443322 11122233333333
Q ss_pred HHHHHHHHHhhcC-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh--HhhHHHHHHHcCCHHHHHH
Q 001392 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YYGLGQVQLKLGDFRSALT 363 (1088)
Q Consensus 287 A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~ 363 (1088)
+...+..+....+ ..+..+..+..++..+...|++++|...+.++++.. |+.... ........+..++...++.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHH
Confidence 4445555544321 223567888888889999999999999999988743 333221 1222333344577888888
Q ss_pred HHHHHHHhCCCcH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 364 NFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 364 ~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
.+++.++..|+++ ..+..+|.++.+.|++++|..+|+ .++...|++.. +..++.++ ..|+.++|..++++++..
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888889888 888888999999999999999998 56777776655 45888888 888889998888888765
Q ss_pred HH
Q 001392 439 LK 440 (1088)
Q Consensus 439 ~~ 440 (1088)
.-
T Consensus 400 ~~ 401 (409)
T TIGR00540 400 ML 401 (409)
T ss_pred Hh
Confidence 43
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=8.3e-19 Score=191.25 Aligned_cols=263 Identities=24% Similarity=0.311 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 166 LGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
+.+|.+++..|++++|+.++.+.+... |++ +..+..+|.+.+.+++++.|+.+|++++..++.++..+..++.+ ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 355777777777777777775544433 444 55666677777777777777777777777777766666666666 45
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
.++ +.+|+.++.++++..+ ++..+..++.++...++++.+..++..+.... ..+..+..|..+|.++...|++++
T Consensus 90 ~~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 90 DGD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555 7777777777666543 44555566666777777777777777766422 234556777788888888888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
|+..|++++. ..|.+..+...++.+++..|++.++...+.......|.++..+..+|.+|..+|++++|+.+|++++
T Consensus 165 A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 165 ALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 8888888887 4566777777788888888888888888777777777777788888888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 404 KIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 404 ~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
..+|+++.++..+|.++ ..|+.++|..++.++...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888 888888888887776654
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.1e-16 Score=190.36 Aligned_cols=251 Identities=12% Similarity=-0.009 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCH
Confidence 356666666666666666666666666655432 23566666666666666666 55566666666666666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1088)
++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.+
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666666666666666666666666666666 66666666666666666665555555555666666667666666
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
++... +|..+..+..+|.++...|++++|...+.++.. ..|....+...++..|...|+ .|...++.+++...
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 65432 244456667777777777777777777766654 445555566666666666663 66666666555432
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
....-...+..+|.-.|+.+.+... .++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222222366666667777666666 555443
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=165.45 Aligned_cols=275 Identities=17% Similarity=0.183 Sum_probs=243.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 136 QLLLAKGEVEQASSAFKIVLEAD---RDN-------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~~-------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
.+++..++...|-..+...+..+ |.. -.-...+|.||++.|-+.+|.+.++..+...|.. +.+..+..
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 34556677777776666655442 211 1223568999999999999999999999998874 67889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+..+...++..|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
.|+.+|.++++..- ..++.+.++|.|++..++++-++..|.+++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 99999999998764 445999999999999999999999999999866566677889999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
+-++..+|++.+++++||.+-.+.|+.+.|..++..+....|.-....++++.
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 99999999999999999999999999999999999999999987776666554
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.77 E-value=2.3e-13 Score=148.74 Aligned_cols=659 Identities=13% Similarity=0.109 Sum_probs=407.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCHH-HHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh-hhhhhhHHHHHHH
Q 001392 36 EQAPLDLWLIIAREYFKQGKVE-QFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE-TKQREKEEHFILA 113 (1088)
Q Consensus 36 e~~~~~~~~~la~~y~~~g~~~-~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~-~~~~~r~~~~~~A 113 (1088)
.|-++..|..... +++|... .-..++++++.. ++++ +.+..-|+..-... ...-.-+..|..-
T Consensus 23 np~svk~W~RYIe--~k~~sp~k~~~~lYERal~~-----lp~s--------ykiW~~YL~~R~~~vk~~~~T~~~~~~v 87 (835)
T KOG2047|consen 23 NPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKE-----LPGS--------YKIWYDYLKARRAQVKHLCPTDPAYESV 87 (835)
T ss_pred CchhHHHHHHHHH--HHccCChHHHHHHHHHHHHH-----CCCc--------hHHHHHHHHHHHHHhhccCCCChHHHHH
Confidence 4556778887653 3344443 445567777654 2222 11222233211100 0000114556777
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
-.+|++++-.-..-|..|+.....+..+|+...-...|.++|..-|- +...|-......-..+-..-++..|++.|+.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 78888888877788899999999999999999999999999988773 3455655556667778889999999999999
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
.|... -.....+...++.++|.+.+...+.. .+.+...|..+..+..+..+...--.--..++..+...
T Consensus 168 ~P~~~----eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 APEAR----EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred CHHHH----HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 99872 33456778899999999999988754 34455667777776665544211122234556666666
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhcCCCCCc
Q 001392 265 PYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKPHEF 341 (1088)
Q Consensus 265 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~~~~ 341 (1088)
++. ...|..||.+|.+.|.+++|..+|+.++...-...+...++...+ .|++..-.+.- +..........
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhhh
Confidence 654 467888999999999999999999998865422222222222111 11111111100 10011111111
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCC-----CHHHHHH
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR-----DAQAFID 415 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~-~~p~-----~~~~~~~ 415 (1088)
...-..++..-........ -.=.-++..+|+++..|.....++ .|+..+-+..|..++. .+|. -...|..
T Consensus 317 ~dl~~~~a~~e~lm~rr~~--~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPL--LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhHHHHHHHHHHHHhccch--HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 1111112211111111110 011223566888888888776654 5788888999988875 3554 3578999
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001392 416 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 494 (1088)
Q Consensus 416 la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~ 494 (1088)
+|.+| ..|+.+.|...|+++....-.. ...-..+|...|..-....+++.|+.+.+.+...+....
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------------ 459 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------------ 459 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------------
Confidence 99999 9999999999999998752111 111257888889899999999999999999987432110
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 001392 495 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 574 (1088)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 574 (1088)
+.+|+....... .--....+|..++.+....|-++.....|.+++.+---.+....+.|..+....-
T Consensus 460 ----------~~~yd~~~pvQ~---rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 460 ----------LEYYDNSEPVQA---RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKY 526 (835)
T ss_pred ----------hhhhcCCCcHHH---HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHH
Confidence 011110000000 0012456777788888888888888888888888776677777888888888888
Q ss_pred hHHHHHHHHHHHHHC--CCChhHHHhhhhhhh---cccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcC
Q 001392 575 LQLSIELVNEALKVN--GKYPNALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 649 (1088)
Q Consensus 575 ~~~A~~~l~~al~~~--p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~ 649 (1088)
++++.+.|++.+.+. |.-.++|..+-.-.. ..-..+.|..+|+++++..|....-.++ |. |...
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy-Ll---YA~l------- 595 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY-LL---YAKL------- 595 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH---HHHH-------
Confidence 888888888888876 444455554322222 2235788888888888877753332222 11 3333
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC-CCCHHHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHc
Q 001392 650 PKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727 (1088)
Q Consensus 650 ~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~ 727 (1088)
+.+-|-...|+.+|+++-..- +.....++++-+.-+ ..=-...-..+|+++++..|++ ......+..+..-...
T Consensus 596 -EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEtkl 671 (835)
T KOG2047|consen 596 -EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLETKL 671 (835)
T ss_pred -HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhhhh
Confidence 111277788888888876543 333333333322211 1112344567888888887744 3345566677777888
Q ss_pred cCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Q 001392 728 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 765 (1088)
Q Consensus 728 g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~ 765 (1088)
|..+.|..+|.-+.+..+...++..|..--..-.+.|+
T Consensus 672 GEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 672 GEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred hhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 88888888888887765444445555544444455666
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=2e-16 Score=188.21 Aligned_cols=269 Identities=15% Similarity=0.071 Sum_probs=213.8
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q 001392 157 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 222 (1088)
Q Consensus 157 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~ 222 (1088)
..|.+..+ ++..|...+.. +.+.+|+.+|++++..+|++ +.++..+|.|+..++ ++.+|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 34455442 34445444333 45789999999999999999 677888998877443 48899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001392 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1088)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1088)
+++++|+++.++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999775 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001392 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1088)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1088)
..+..++.++.+++..|++++|+..+.+++.. .+|..+.++..+|.++...|++++|...+.++....|....++..+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 44455666677788899999999999998863 2466777888999999999999999999999988888888899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 437 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~ 437 (1088)
+..|...|+ .|...++++++..-..+.....+..++ ..|+.+.+..+ +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 999888884 777777776654322222222266666 66777766655 55544
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.76 E-value=1.4e-12 Score=142.58 Aligned_cols=601 Identities=11% Similarity=0.119 Sum_probs=406.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHH--c------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLA--K------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~--~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
+-..+|+++++.-|.+...|+..-..-.. . .-|..--.+|++++-.-.+-+..|+.....+..+|+...-..
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 45678889999999999988765422221 1 235666677888877666778899999999999999999999
Q ss_pred HHHHHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 184 FYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 184 ~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
.|.++|..-|-. -..+|-.........|-.+-++..|++.|+++|....-+. ..+...++ +++|-+.+...+.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi---e~L~~~d~---~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI---EYLAKSDR---LDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---HHHHhccc---hHHHHHHHHHhcC
Confidence 999999988754 1233444445556678888999999999999998654332 33344455 7888888877765
Q ss_pred hC-------CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 263 IY-------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 263 ~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+ |.+...|..+..+..+.-+.-. +..++...+... .......|..||..|.+.|.+++|..+|.+++
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 43 5666778777777766554433 334444444322 12335678999999999999999999999999
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH--h--CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p 407 (1088)
...-...++..++-..+ .|++....+.--+. . ++. ...+-..++..-.-+.....- .-.-++..+|
T Consensus 276 ~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~ 346 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL--LNSVLLRQNP 346 (835)
T ss_pred HhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH--HHHHHHhcCC
Confidence 74433334333332222 12221111110011 0 111 112222222222211111111 1112456789
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccc
Q 001392 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (1088)
Q Consensus 408 ~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~ 486 (1088)
++...|.....++ .|+..+-+..|..++... |......+..+|..+|.+|...|+.+.|..+|.++....-
T Consensus 347 ~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y------- 418 (835)
T KOG2047|consen 347 HNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY------- 418 (835)
T ss_pred ccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-------
Confidence 9999998777666 567788888888887654 3333333468899999999999999999999999987421
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc--C--------
Q 001392 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY--Q-------- 556 (1088)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p-------- 556 (1088)
..-.+...+|...|..-....+++.|..+.+.+...- |
T Consensus 419 --------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 419 --------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 0112346788899999889999999999999887521 1
Q ss_pred --------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001392 557 --------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1088)
Q Consensus 557 --------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~ 628 (1088)
.....|..++.+....|-++.....|++++.+---.|....++|.++....-++++.+.|++.+.+.+-+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 124567777888888899999999999999999889999999999999999999999999999998776555
Q ss_pred HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC--HHHHhhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001392 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 629 ~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p 706 (1088)
+- +.+. |+...-... ...+.+.|..+|++++...|.. -..+...+..-.+-|....|+.+|+++....+
T Consensus 547 ~d---iW~t-YLtkfi~ry-----gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 547 YD---IWNT-YLTKFIKRY-----GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HH---HHHH-HHHHHHHHh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 42 2333 433311111 1156899999999999988742 12333445555567999999999999877553
Q ss_pred CCCCCCchhHHHHHHHHHHHcc----CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 707 GSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 707 ~~~~~~~~~~~~~la~~~~~~g----~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
+.-.+.+-++|...- -...-..+|++|++..|+..-.......+..-.+.|..+.|..+|.-.-++.|.
T Consensus 618 -------~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 618 -------EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred -------HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 333333434443321 123445789999988655444556667788888999999999999888887654
Q ss_pred Chh
Q 001392 783 NYT 785 (1088)
Q Consensus 783 ~~~ 785 (1088)
...
T Consensus 691 r~~ 693 (835)
T KOG2047|consen 691 RVT 693 (835)
T ss_pred cCC
Confidence 433
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=3.7e-15 Score=169.98 Aligned_cols=296 Identities=13% Similarity=0.064 Sum_probs=217.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
.+..|...+..|+|+.|.+.+.+.....+.....+...+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988887655433323344444666699999999999999999999988444455668999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH--------HHHHHHhcC
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 282 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~--------la~~~~~~g 282 (1088)
|+++.|...++++++.+|+++.++..++.+|...|+ +++|+..+.+..+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988 999999998888877665443221 111111222
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHH
Q 001392 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1088)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1088)
+.+...++.... +...+..+.+...++..+...|+.++|...+.++++ .++ ........+ .+..+++.+++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l~~--~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLLIP--RLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHHHh--hccCCChHHHH
Confidence 222222222222 222355677888888888888888888888888876 222 222222222 23448888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++.. +..++.++ ..|+.++|..+|++++...
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888888888888888888888888888888888888888887543 55788888 8888888888888877653
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=7.4e-15 Score=168.51 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.|+|..|.+.+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677999999999999998888899999999999999999999999999999885 56677899999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA----LAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
+.+++..|++ +.++..++.++...|+++.|...+.+.++..+.++..+.. ...-.+..+. ..++...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 6788999999999999999999999999876554443321 1111122222 455566777888
Q ss_pred HhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001392 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1088)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1088)
...| +++.++..++..+...|+++.|...++.+++..+.++.... ...........++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 58999999999999999999999999999986544332110 12233334456889999999999998 5
Q ss_pred CCCch--hhHhhHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
.|+++ .....+|.+++..|++++|..+|+ .+++..|+... +..+|.++.+.|+.++|..+|++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666 778899999999999999999999 57778887655 559999999999999999999998654
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.1e-14 Score=152.50 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHH--------HHCCCChhHHHhhhhhhhcccchH
Q 001392 540 DTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEAL--------KVNGKYPNALSMLGDLELKNDDWV 610 (1088)
Q Consensus 540 ~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al--------~~~p~~~~~~~~l~~~~~~~g~~~ 610 (1088)
.+..|..++......+|.. ..+.+.++.+...+|++..|+..+...+ ... ..|.+-..+..+|.+.++..
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCc
Confidence 5667777777777777765 5566667777777777777777776332 111 12223333333344444433
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCC
Q 001392 611 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (1088)
Q Consensus 611 ~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~ 690 (1088)
.|...+ ++|+.+|.....-.+.-...+...+..-...|+
T Consensus 435 ~a~~vl-----------------------------------------~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 435 SASAVL-----------------------------------------DSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred cHHHHH-----------------------------------------HHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 343433 444444444333333222333444555556688
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHH
Q 001392 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736 (1088)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~ 736 (1088)
-.+|...++++++.+| .+.+++..+...|... +.+.|+.+
T Consensus 474 ~~ea~s~leel~k~n~-----~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNP-----NDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred hHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHhc-CHHHHHHH
Confidence 8888888888888877 6678888887777664 56777765
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.8e-14 Score=152.66 Aligned_cols=459 Identities=14% Similarity=0.073 Sum_probs=300.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.++.|++|++..++++.+.|+++.++.....++.+.++|++|+...+.-....-.+ ...+..|.|.|+.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 36788899999999999999999999999999999999999995554433222222 22379999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
+ ..++.+ ..+....|..++++|+|++|..+|+..++.+.++.+.......+..... .... ..+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhccCCC
Confidence 8 344544 5567889999999999999999999999888777666554443322211 0111 334444455
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCC-------CchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 266 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGP-------TKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 266 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
. +...+++.|.++...|+|.+|+++++.++.. ...+. ....+...++.++..+|+..+|...|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 5678899999999999999999999999432 11111 113456778999999999999999999999
Q ss_pred HhcCCCC-CchhhHhhHHHHHHHcCCHH-HHHHHHHHHHHhCCC----------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 333 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYPD----------NCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 333 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
+..+.+. ....+..++..+-....-++ .++..++......++ -..++.+.+.+.+..+..+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8543222 22222333322221111111 122222222111111 12355566666666677777766666
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001392 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1088)
Q Consensus 401 k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~ 479 (1088)
..-...|............. ....+..+..++.......+. ....+...++.+.+..|++..|+..+...+. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~--~ 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLE--S 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h
Confidence 55545554433333333333 333566676666655443222 1356888889999999999999999985552 1
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHH------
Q 001392 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------ 553 (1088)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------ 553 (1088)
|.+.+. .....+.+...+..++...++...|...+..++.
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111100 0112334444555566677776667766666664
Q ss_pred -HcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHH
Q 001392 554 -KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 554 -~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1088)
..+.....+..++..-.+.|+-++|...+++.++.+|++..++..+...|... +.+.|..+-.
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 22233445555666677779999999999999999999999998888876654 4555555444
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1e-13 Score=140.82 Aligned_cols=450 Identities=14% Similarity=0.132 Sum_probs=300.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHH
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~ 215 (1088)
-++...+|.-|+.+++..+..+... ...-..+|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 3456678999999988887655433 3566788999999999999999999887743 3347788999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
|...-.+ .|+++-....+-.+..+.++ ++-+..|...+.
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklnd----Ek~~~~fh~~Lq--------------------------------- 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLND----EKRILTFHSSLQ--------------------------------- 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCc----HHHHHHHHHHHh---------------------------------
Confidence 9887766 46666655555555566665 122222222211
Q ss_pred hhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001392 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1088)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1088)
+..+-...++.+++..-.|.+|+.+|.+++. .+|.....-..++.+|.++.-|+-+.+.+.-.+...|++
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1113445566777777789999999999987 777777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~-~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 453 (1088)
+.+.+..+...++.=+-..|..-...+... +...+.+-..+-.-+ .-.+-+.|+..+-..++.. +++..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--------PEARlN 290 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--------PEARLN 290 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC--------hHhhhh
Confidence 999888888777664433344333333221 112222222221111 2233455666655555442 567778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHH
Q 001392 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (1088)
Q Consensus 454 l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (1088)
++..|.+.++..+|+.+.+. ..|..+.-+...|.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgv 324 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGV 324 (557)
T ss_pred heeeecccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHH
Confidence 88889999999999887754 34566666666777
Q ss_pred HHHhcCCHHHHHHHHHHH---HHHc------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhh
Q 001392 534 LLEQIHDTVAASVLYRLI---LFKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1088)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~---l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~ 604 (1088)
++...|+-....+.++-+ +..- -+.+.....++.+++-..++++.+.+++..-...-++....++++++++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 777776644333333222 2111 1223345566666677777888888888877777778888888888888
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH-HHhhHHH
Q 001392 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY-AANGAGV 683 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~la~ 683 (1088)
..|++.+|.+.|-++....-.++..-...|+.+ |... +++.-|..+|-+. ..|...+ .+..++.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArC-yi~n------------kkP~lAW~~~lk~--~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARC-YIRN------------KKPQLAWDMMLKT--NTPSERFSLLQLIAN 469 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH-HHhc------------CCchHHHHHHHhc--CCchhHHHHHHHHHH
Confidence 888888888888766543322222223345556 7666 7777776666432 2233333 3455677
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcC
Q 001392 684 VLAEKGQFDVSKDLFTQVQEAASG 707 (1088)
Q Consensus 684 ~l~~~g~~~~A~~~~~~~~~~~p~ 707 (1088)
.....+.+=-|.+.|..+-..+|.
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccCCC
Confidence 777788888888888887777763
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=4e-16 Score=169.60 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=192.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+..|..+++.|++.+|.-+|+.++..+|.+.++|..||.+....++ -..|+..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4567777777777777777777777777777777777777777666 6677777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKS----HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
.|.-..|...+..-+.......... .-.+...........+..-..+|..+....+ ....+.++..||.+|...|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHHhcch
Confidence 7777777777777664321100000 0000000000011112333455555554322 1256778999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a 435 (1088)
+|++|+.||+.+|...|++...|+.||-.+....+..+|+..|.+++++.|..+.++++||..+ ..|.|.+|+.+|-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhcCCCC-----CHHHHHHHHHHHHHcCCHHHHHH
Q 001392 436 RTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQ 469 (1088)
Q Consensus 436 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~ 469 (1088)
+.+.++..... ...+|..|-.++...++.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99987732211 13566666666777777664443
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.5e-14 Score=165.06 Aligned_cols=297 Identities=14% Similarity=0.110 Sum_probs=234.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQ 243 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~ 243 (1088)
.+..|.+.+..|+|..|.+.+.+.....+. +...+...+.+..+.|+++.|..+|.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 345566777899999999888776554333 34444555666699999999999999999999998644 4455899999
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH-----HHHHHHHHHHhc
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 318 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-----~~~~la~~~~~~ 318 (1088)
.|+ ++.|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999876544332211 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1088)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1088)
.+.+....++..... ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..++.++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 333333333333322 34567888999999999999999999999999994 5566555555544 44999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 399 ~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
+++.++.+|+++..++.+|.++ ..+++.+|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987544 566778999999999999999999999874
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=4.4e-15 Score=161.91 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHhhcCC---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 108 EHFILATQYYNKASRIDM---H-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p---~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
...+.++..+++++...| . .+..|+.+|.+|...|++++|+..|.+++..+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455678888888886443 2 367799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
.|+++++++|++ ..+++.+|.+++..|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.++...
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422221 22233444 88888888776654
Q ss_pred C
Q 001392 264 Y 264 (1088)
Q Consensus 264 ~ 264 (1088)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=166.05 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=208.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
+..|..+++.|+..+|.-.|+.++. .+|..+.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 4578899999999999999999988 578899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHh-------hhhhhh
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM-------LGDLEL 604 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-------l~~~~~ 604 (1088)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|..++.+-+...|........ ...-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999998888754322211 000112
Q ss_pred cccchHHHHHHHHHhhhcCCC-CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHH
Q 001392 605 KNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~~~-~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~ 683 (1088)
....+..-.+.|-.+....|. .|+-....||-+ |... |.|++|+.+|+.+|+..|+|...|+.||.
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 222344455666666555443 577778889988 8888 99999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--------HHHHHH
Q 001392 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--------AQILLY 755 (1088)
Q Consensus 684 ~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--------~~~l~~ 755 (1088)
.++...+..+|+..|++++++.| ....+++|||.+++.+|-|.+|+++|-.+|..-..+.+ -.+|..
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 78899999999999999999999999999987544211 145666
Q ss_pred HHHHHHhhccHHHH
Q 001392 756 LARTHYEAEQWQDC 769 (1088)
Q Consensus 756 La~~~~~~g~~~~A 769 (1088)
|=.++...++.+-+
T Consensus 548 LR~als~~~~~D~l 561 (579)
T KOG1125|consen 548 LRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHcCCchHH
Confidence 55555555655533
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=5.2e-15 Score=143.12 Aligned_cols=210 Identities=21% Similarity=0.201 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
..+++.+|.-|+..|++..|...++++|+.+|++..+|..++.+|...|. .+.|-+.|+++++++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45688899999999999999999999999999999999999999999988 889999999999999999988888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
.++..|.+++|...|++++..+ ..+..+.++.++|.|..+.|+++.|..+|++++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888888653 4455668888888888888888888888888887 66777778888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~ 413 (1088)
+|-.|..+++......+-....+.....+-...|+.+.+-.+=.++....|......
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 888888888888887777778888778888888888888888888778888776543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=6.3e-15 Score=160.72 Aligned_cols=149 Identities=11% Similarity=0.068 Sum_probs=121.5
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHH
Q 001392 141 KGEVEQASSAFKIVLEADR----DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1088)
.+..+.++..+.+++...| ..+.+++.+|.++...|++.+|+..|++++..+|++ +.+++.+|.++...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 3567888999999986443 336789999999999999999999999999999998 78899999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1088)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1088)
+..|.++++++|++..++..+|.++...|+ +++|+..|.+++..+|+++..... ..+....+++.+|...+...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHH
Confidence 999999999999999999999999999998 999999999999999988732111 11222344455555555443
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.69 E-value=5.9e-14 Score=158.12 Aligned_cols=256 Identities=23% Similarity=0.277 Sum_probs=196.2
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-
Q 001392 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI- 371 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 371 (1088)
....|....+...++..|..+|+|+.|+..+..+++... ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 344566666777788888888888888888888876421 12333334445888899999999999999988875
Q ss_pred -------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001392 372 -------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1088)
Q Consensus 372 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--------p~~~~~~~~la~l~-~~~~~~~A~~~~~~a 435 (1088)
+|....++.+|+.+|...|++.+|..++++++.+. |.-...+..++.++ ..+.+++|..+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34445688889999999999999999998888763 33456677778888 899999999999999
Q ss_pred HHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001392 436 RTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1088)
Q Consensus 436 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1088)
+++..+.....+ +.++.++|.+|+..|++.+|..+|++++.+....
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~------------------------------- 400 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL------------------------------- 400 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc-------------------------------
Confidence 999885433322 6789999999999999999999999999852100
Q ss_pred cCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1088)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 585 (1088)
.-...+.....+.++|..|.+.+.+.+|..+|..++.+ +|+....|.+|+.+|..+|+++.|+++...+
T Consensus 401 ----~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 401 ----LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred ----ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00023445678889999999999999999999887753 4555778889999999999999999988887
Q ss_pred HHH
Q 001392 586 LKV 588 (1088)
Q Consensus 586 l~~ 588 (1088)
+..
T Consensus 477 ~~~ 479 (508)
T KOG1840|consen 477 LNA 479 (508)
T ss_pred HHH
Confidence 754
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.68 E-value=1.1e-14 Score=140.96 Aligned_cols=201 Identities=23% Similarity=0.197 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
.+.+.+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|..+.|-+.|++++.++|++ ..++.+.|..++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-GDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-cchhhhhhHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999998 888999999999
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 209 KLGQLGKARQAFQRALQL--DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
.+|++++|...|++++.. .|..+..+.++|.|.++.|+ .+.|..+|++++..+|+.+.+...++...+..|+|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ---FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC---chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999863 23456788999999999998 8999999999999999999888888888888888888
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1088)
|..+++...... +...+++....++-...|+-+.|-.+=.+....+|
T Consensus 192 Ar~~~~~~~~~~---~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRG---GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhcc---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 888888777544 34456666666677777777777666666655443
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.6e-15 Score=155.04 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=230.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
+...|..|+..|+.|+...|.++..|..++..++..|+|++|....++.++++|..+......+.++...++..+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999998888888888888888777776555
Q ss_pred HHHH---------------HhC---CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchH
Q 001392 186 KRAL---------------QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1088)
Q Consensus 186 ~~al---------------~~~---p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1088)
+..- ..+ |.+ ..+.+..+.|+..+|+++.|...--..+++++.+..+++..|.++....+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 4211 111 222 34567788999999999999999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001392 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1088)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1088)
.+.|+..|++++.++|.+..+-... ..+.....+..-|.-.+..|.|..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~-------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS-------------------------MMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh-------------------------hhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999876432110 1123336677788899999999999999
Q ss_pred HHHHHHhcCC-CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001392 328 YMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 328 ~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~ 406 (1088)
|..++...|. ...++..|.+++.+...+|+..+|+..++.+++++|....++...|.|+..+++|+.|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999984332 123455688999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 001392 407 PR 408 (1088)
Q Consensus 407 p~ 408 (1088)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 54
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=1.4e-13 Score=155.12 Aligned_cols=255 Identities=25% Similarity=0.225 Sum_probs=210.7
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc--
Q 001392 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 335 (1088)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 335 (1088)
..|.-..+...++..|...|+|+.|+.++..++... ...+........+|.+|..++++.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 356677778889999999999999999999988651 1234445566679999999999999999999998743
Q ss_pred ---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1088)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~ 404 (1088)
..+|..+.++.+|+.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3567777889999999999999999999999998763 22345788899999999999999999999987
Q ss_pred hC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001392 405 ID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFK 472 (1088)
Q Consensus 405 ~~--------p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~ 472 (1088)
+. |.-+..+.+||.+| ..|++.+|..+|++++.+......... ...++++|..|.+.+.+.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 62 34477889999999 999999999999999999877644322 4678899999999999999999999
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 001392 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (1088)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (1088)
++..+.. . .-...|.....+.+|+.+|..+|+++.|+++...++
T Consensus 434 ~~~~i~~-~-----------------------------------~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMK-L-----------------------------------CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH-H-----------------------------------hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9987421 0 001457788899999999999999999999999888
Q ss_pred H
Q 001392 553 F 553 (1088)
Q Consensus 553 ~ 553 (1088)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=2.1e-14 Score=152.44 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
...+..++.+|...|... +|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 345555666665555444 666667776666666666666677777777777777777777776666666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 666667777777777777777777766543 222 34456666666777777777777777766666666666666666
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1088)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666 666666666666666666655555555555555555555554443
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=3.2e-14 Score=151.08 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+ +++|+..+.+++...|.++.++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455556666666666666666666666666655556666666666555 556666666666655555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
++...|++++|...+..++... ..+.....+..+|.++...|++++|...|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555444321 1122334555566666666666666666666665 33444455566666666666
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
++++|+.++++++...|.++..+..++.++...|+.+.|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666665555566666666666666666666655555443
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.3e-12 Score=132.08 Aligned_cols=300 Identities=20% Similarity=0.249 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 206 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~~lg~~ 206 (1088)
-+..|.-++...+.++|+..|..+++.+|....+.+.+|.++.+.|..+.|+.+.+.++. .|+. ...+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 455788888899999999999999999999999999999999999999999999887765 5554 23456778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
|...|-++.|...|........--..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~---------------- 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV---------------- 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh----------------
Confidence 9999999999999988876555566778888888888877 888888888887777654321
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1088)
..+..|..++..+....+++.|+..+.++++ .+|..+.+-..+|.+....|+|..|++.++
T Consensus 178 ----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 178 ----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred ----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 1235677788888888899999999999998 678888889999999999999999999999
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 367 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 367 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
.+++.+|.. +.+...|..||.++|+..+....+.++.+..+.. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt--- 314 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT--- 314 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc---
Confidence 999999886 4788889999999999999999999999887654 4445556655 555566666666555544332
Q ss_pred CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q 001392 445 EVPIEVLNNIGVIHFEK---GEFESAHQSFKDALG 476 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~---g~~~~A~~~l~~al~ 476 (1088)
...++.+....... |...+.+..+..++.
T Consensus 315 ---~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ---MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ---HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44444444444432 445666666766665
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5e-15 Score=154.02 Aligned_cols=311 Identities=16% Similarity=0.142 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
-....+..+++..+|..|+..|..++...|++ ...|...+.++..+|+++.|....+..+.++|..+......+.++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 45566667777777777777777777777777 55677777777777777777777777777777777666666666666
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
.++ ..+|...++. . .++ ....
T Consensus 130 ~~~---~i~A~~~~~~--------~-------------------------------------~~~-----------~~an 150 (486)
T KOG0550|consen 130 LSD---LIEAEEKLKS--------K-------------------------------------QAY-----------KAAN 150 (486)
T ss_pred hHH---HHHHHHHhhh--------h-------------------------------------hhh-----------HHhh
Confidence 655 4444444330 0 000 1123
Q ss_pred HHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
|+..+++.+......|....+.+.-+.++...|++.+|+..--.++++++.+..+++..|.++...++.+.|+.+|.+++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 33333333332222344445566778999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh
Q 001392 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483 (1088)
Q Consensus 404 ~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~ 483 (1088)
.++|+...+-..... .. ....+..-|.-.++.|++..|.+.|..++.+.|.
T Consensus 231 ~ldpdh~~sk~~~~~----------------~k----------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--- 281 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMM----------------PK----------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--- 281 (486)
T ss_pred ccChhhhhHHhHhhh----------------HH----------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc---
Confidence 999987544321111 11 1345566788899999999999999999986441
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHH
Q 001392 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563 (1088)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 563 (1088)
....++..|.+.+.+...+|+..+|+.-...++.++|.++.++.
T Consensus 282 ------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 282 ------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred ------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 22346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 564 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
+.|.++..+++|++|++.|+++++...+ ......+.
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 9999999999999999999999998766 44444433
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.6e-13 Score=135.31 Aligned_cols=285 Identities=18% Similarity=0.146 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1088)
.++|+..|..+++.+|....+...||++|...|..+.|+.+...++..++.. .....+...+|.-|...|-++.|..+|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444444444444444444444444445555555555555544444332221 123456788899999999999999999
Q ss_pred HHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
...+. .+.....+.-.|..+|....++++|+...++..++.+.. ...+..|+..+....+.+.|+..+.+++
T Consensus 131 ~~L~d---e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 131 NQLVD---EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHhc---chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 88875 344455677888899999999999999999998887654 4577788888888899999999999999
Q ss_pred HhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhh
Q 001392 404 KIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482 (1088)
Q Consensus 404 ~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~ 482 (1088)
+.+|++..+-+.+|.+. ..|++..|++.++.+++..+.. -++++..+..+|...|+..+....+..+....
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~---- 279 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN---- 279 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 99999999999999999 9999999999999988875543 36788888999999999999999999888732
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHH
Q 001392 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (1088)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (1088)
..+.+...++..-....-.+.|..++.+-+..+|.-- ..
T Consensus 280 ----------------------------------------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf 318 (389)
T COG2956 280 ----------------------------------------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GF 318 (389)
T ss_pred ----------------------------------------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HH
Confidence 1344555566666666777888888888888899753 33
Q ss_pred HHHHHHHHH---cCChHHHHHHHHHHH
Q 001392 563 LRLAAIAKA---RNNLQLSIELVNEAL 586 (1088)
Q Consensus 563 ~~la~~~~~---~g~~~~A~~~l~~al 586 (1088)
+++...... -|...+.+..+..++
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHH
Confidence 444333322 233555555555544
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=8.6e-13 Score=150.98 Aligned_cols=317 Identities=16% Similarity=0.162 Sum_probs=196.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...++....++...|++++|+..+......-++....+-.+|.+++++|++++|...|..++..+|++ ...+.++..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 45667777788888888888888877777777777788888888888888888888888888888887 55566666666
Q ss_pred HHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 208 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM-EKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 208 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al-~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.... ..+.-..+|.......|....+.. +...+. .|+ .+...+ .++...+.. .-|.++..+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3332 455556666666666665433321 111111 121 133222 233333322 2233333333333222
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHhhHHHHHHHcCCHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 360 (1088)
....-...++......... .|.+. ... .....+|. ...+++.+++.|...|++++
T Consensus 157 ~K~~~i~~l~~~~~~~l~~-----------------~~~~~----~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLES-----------------NGSFS----NGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHHHHHHHHHHHHHHhhcc-----------------cCCCC----Ccc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 1111111111111110000 00000 000 00001111 23566888999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
|+.++++++...|..++.+...|.+|...|++.+|...++.+..+++.+-.+....+..+ +.|++++|...+....+..
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999988887777777777 8899998887766543321
Q ss_pred HhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 440 KKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 440 ~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
. +...+ .......|.+|.+.|++..|+..|..+...
T Consensus 293 ~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 293 V--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred C--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 11111 233345688999999999999999888764
No 86
>PLN02789 farnesyltranstransferase
Probab=99.62 E-value=1.8e-13 Score=148.33 Aligned_cols=228 Identities=14% Similarity=-0.004 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYK 186 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~ 186 (1088)
+.|.+|..+|..++. ..+.+++|+..+.+++..+|.+..+|..++.++...| .+.+++..+.
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 345566666655544 3467889999999999999999999999999999998 6899999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
+++..+|++ ..+|...+.++..+|.. +.++.++.++++.+|.|..+|...+.++...|. +++++..+.++++.+
T Consensus 97 ~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d 172 (320)
T PLN02789 97 DVAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHC
Confidence 999999998 66788899888888874 678899999999999999999999999999888 999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1088)
|.+..+|+..+.++...+... . .....+.++.+..+++. ..|.+..+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~---------------------------~---~~~~~e~el~y~~~aI~---~~P~N~Sa 219 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLG---------------------------G---LEAMRDSELKYTIDAIL---ANPRNESP 219 (320)
T ss_pred CCchhHHHHHHHHHHhccccc---------------------------c---ccccHHHHHHHHHHHHH---hCCCCcCH
Confidence 999988888877654432100 0 00123456677777776 56777777
Q ss_pred HhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001392 345 YYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1088)
Q Consensus 345 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1088)
|+.++.++.. .+...+|+..+..++...|.++.++..|+.+|...
T Consensus 220 W~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 220 WRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888776 34556788888888888888888888888888753
No 87
>PLN02789 farnesyltranstransferase
Probab=99.62 E-value=1.2e-13 Score=149.64 Aligned_cols=240 Identities=12% Similarity=-0.048 Sum_probs=205.7
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
.+....++-.+-.++...+..++|+..+.+++..+|.+..+|...+.++..+| .+.+++.++.+++..+|++..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34455566666677888899999999999999999999999999999999998 68999999999999999999999999
Q ss_pred hhhhhcccch--HHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 001392 600 GDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1088)
Q Consensus 600 ~~~~~~~g~~--~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 677 (1088)
++++.+.|.. ..++..+.+++...|. +..++...+.+ +... |.+++|++++.++++.+|.|..+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchhH
Confidence 9999888873 7889999999999887 78889889988 7777 89999999999999999999999
Q ss_pred HhhHHHHHHhc---CCc----hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhcC
Q 001392 678 ANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 678 ~~~la~~l~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~al~~~~~ 746 (1088)
|+.++.++.+. |.+ +.++.+..+++...| ++..+|..++.++.. .++..+|+..+..++.. .
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~ 251 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--D 251 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--c
Confidence 99999998876 333 478888889999998 789999999999988 45677899999998875 6
Q ss_pred CCCHHHHHHHHHHHHhhc------------------cHHHHHHHHHHHHHhCC
Q 001392 747 NTDAQILLYLARTHYEAE------------------QWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~~g------------------~~~~A~~~l~~al~~~p 781 (1088)
+.++.++..|+.+|.... ...+|.+++..+-+.+|
T Consensus 252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 777889999999998642 23557777766655555
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=2.6e-12 Score=146.16 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=157.2
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1088)
||+.+.++..+|..+...|+.+.|...+..+....|.+ ....+..+.+++..|++++|+..+++++..+|.+. .++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHH
Confidence 78889999999999999999999888888888777654 45677788889999999999999999999999884 333
Q ss_pred HHHHHHHHHcCCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 201 LGIGLCRYKLGQL----GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 201 ~~lg~~~~~~g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
.. +..+..+|.+ ..+...+......+|....++..+|.++...|+ +.+|+..+++++..+|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 32 5555555444 344444443334566677777788888888888 889999999999999998888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
+++..|++++|+.++.+.+...+..+. ....+..++.++...|++++|+..|.+++.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888888865433222 234566788888888888888888888764
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.58 E-value=2.8e-12 Score=145.90 Aligned_cols=201 Identities=17% Similarity=0.121 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1088)
+....+..++.+|...|... .|...+.++.+..|.+ ....+..|.+++..|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567788888888877655 5566666666666644 456778899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1088)
+|++..++.. +..++..|.+..+...+.+++ ...|.. ...+..+|.++...|++++|...++++++++|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999988775 666666655554444444444 334444 4556678999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001392 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAV 297 (1088)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1088)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+.+++.++..
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999999 9999999999999887543 34567999999999999999999998643
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=6.1e-12 Score=144.04 Aligned_cols=324 Identities=16% Similarity=0.144 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
.+++.....++...|++++|+.++..... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 35555667777788888888888876554 23446667
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHCCCC----------
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKY---------- 592 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~l~~al~~~p~~---------- 592 (1088)
+-..|.++..+|++++|...|..++..+|++...|..+..+..... +...-..+|.+.....|..
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 7778888888888888888888888888888887777777763332 3455566676666666542
Q ss_pred ----------------------hhHHHhhhhhhhcccchHHHHHHHHHhhhc---C---C--------CCC--hHHHHHh
Q 001392 593 ----------------------PNALSMLGDLELKNDDWVKAKETFRAASDA---T---D--------GKD--SYATLSL 634 (1088)
Q Consensus 593 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~---~--------~~d--~~a~~~l 634 (1088)
|.++..+-.+|....+..-...++...+.. . + .+. .++++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 223333333333222222222222222211 0 0 011 2344555
Q ss_pred hhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 001392 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 714 (1088)
Q Consensus 635 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (1088)
+.. |... |++++|+++++++|...|+.+..+...|.+|.+.|++.+|...++.++..++ .+-
T Consensus 201 Aqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DR 262 (517)
T PF12569_consen 201 AQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADR 262 (517)
T ss_pred HHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhH
Confidence 555 5555 9999999999999999999999999999999999999999999999999986 444
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC-CC------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--Chh
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS--NYT 785 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~-~~------~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~--~~~ 785 (1088)
.+-...+..+++.|++++|...+....+....+ .+ .......|.+|.+.|++..|++.|..+.+..-. +..
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 555667888899999999999965543321111 11 223345799999999999999999998887653 334
Q ss_pred HHhHHHHHHHHHHHhhhhhcCCCHHHHHHH---HHHHHHHHHHHHHHhhCC
Q 001392 786 LRFDAGVAMQKFSASTLQKTRRTADEVRST---VAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 786 ~~~nla~~~~~~~~~~l~~~~~~~~~~~~a---~~~l~~A~~~f~~l~~~~ 833 (1088)
+-|+. +|+.++.-+.+-...+..+.+... +.-...|++++-.|.+.+
T Consensus 343 fDFH~-Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 343 FDFHS-YCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred ccHHH-HHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCc
Confidence 44444 356777766555554444444443 445566778887776643
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=8.6e-12 Score=124.26 Aligned_cols=308 Identities=16% Similarity=0.151 Sum_probs=194.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~ 252 (1088)
.+-.+|..|+.++..-.+.+|.+ ...+..+|.||+...+|..|..+|++.-.+.|......+..+..+.+.+. +..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i---~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI---YAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc---cHH
Confidence 45555666666666666666655 33345566666666666666666666555555555544444544444444 444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
|+ .+...+.. .+.....+...-+-+.+..+++..+..+.++.-
T Consensus 97 AL----------------------------------rV~~~~~D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 97 AL----------------------------------RVAFLLLD---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HH----------------------------------HHHHHhcC---CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 44 44333321 111122334444555666677777766655432
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHH
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 411 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p-~~~~ 411 (1088)
..+......+.|.+.++.|+++.|++-|+.+++...-++-+-++++.++++.+++..|+.+...+++..- ++|.
T Consensus 140 -----~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 140 -----SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred -----CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 2355667888899999999999999999999998888888888999999999999999988887776431 1111
Q ss_pred HHHHHHHHH------hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001392 412 AFIDLGELL------ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485 (1088)
Q Consensus 412 ~~~~la~l~------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~ 485 (1088)
. .+|... ..|+. +.....+ -.+.++..+.++++.|+++.|.+.+..+--..
T Consensus 215 l--gIGm~tegiDvrsvgNt---~~lh~Sa-----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa------- 271 (459)
T KOG4340|consen 215 L--GIGMTTEGIDVRSVGNT---LVLHQSA-----------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA------- 271 (459)
T ss_pred c--CccceeccCchhcccch---HHHHHHH-----------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc-------
Confidence 1 111111 11111 1111111 14667777889999999999988775432210
Q ss_pred cccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHH
Q 001392 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL 565 (1088)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 565 (1088)
....++.++.+++..-.. +++.....-+.-++.++|--.+++.++
T Consensus 272 ----------------------------------E~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 272 ----------------------------------EEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred ----------------------------------cccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCCCChHHHHHH
Confidence 223466788888776554 677778888888888999888899999
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 001392 566 AAIAKARNNLQLSIELVNE 584 (1088)
Q Consensus 566 a~~~~~~g~~~~A~~~l~~ 584 (1088)
..+|++..-++.|..++-+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 9999998888877766543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=5.6e-12 Score=125.53 Aligned_cols=423 Identities=16% Similarity=0.120 Sum_probs=275.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
+....+|..|++++......+|.+...+..+|.||+...+|..|..+|+++-.+.|.. ...++..+..+++.+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHHH
Confidence 4777899999999999999999999999999999999999999999999999999998 777888999999999999999
Q ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 218 QAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1088)
Q Consensus 218 ~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1088)
.+...+... |. ....+..-+.+....++ +..+...++ .-| +...+....|.+.++.|+++.|.+-|..+
T Consensus 99 rV~~~~~D~-~~L~~~~lqLqaAIkYse~D---l~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 99 RVAFLLLDN-PALHSRVLQLQAAIKYSEGD---LPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHhccccc---CcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 988776542 21 22333344455555555 444444433 334 46677888888888889999999888888
Q ss_pred HhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 295 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
++..+..| ...++++.++++.|++..|+++....+... ...|........-|.--...|+. +..-..
T Consensus 171 lqvsGyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~S------ 238 (459)
T KOG4340|consen 171 LQVSGYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQS------ 238 (459)
T ss_pred HhhcCCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHH------
Confidence 87765444 677888888888899998888888877632 12232211110000000011111 111111
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001392 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1088)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1088)
.-.++++..+.++++.++++.|.+.+..+--.. .-+|..+.+++..-..+++.....-+.-.+.+ .+.|.+.+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-----nPfP~ETF 313 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-----NPFPPETF 313 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-----CCCChHHH
Confidence 124567777889999999999987765442211 12466777777666677777777666666655 23578999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
.++-.+|++..-|+.|...+-+--... ..- .....+++
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------yk~-L~~Yly~L 351 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------YKF-LTPYLYDL 351 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------HHH-hhHHHHHH
Confidence 999999999998888887775432210 000 11222222
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc
Q 001392 532 ARL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (1088)
Q Consensus 532 a~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g 607 (1088)
-.. -...-..++|.+-+..+-....+.......-.......++ ...|++.|..++++. ..+....+++|+...
T Consensus 352 LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~ 428 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLE 428 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccc
Confidence 222 2233455555554444332111111100000111111111 233555566666553 456778899999999
Q ss_pred chHHHHHHHHHhhhcCCCCChHHH
Q 001392 608 DWVKAKETFRAASDATDGKDSYAT 631 (1088)
Q Consensus 608 ~~~~A~~~~~~al~~~~~~d~~a~ 631 (1088)
++..+.+.|+..+.....++.+-+
T Consensus 429 Dy~~vEk~Fr~SvefC~ehd~WkL 452 (459)
T KOG4340|consen 429 DYPMVEKIFRKSVEFCNDHDVWKL 452 (459)
T ss_pred ccHHHHHHHHHHHhhhcccceeee
Confidence 999999999999998887777643
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.51 E-value=2.7e-12 Score=136.26 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=132.5
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1088)
.++..+..++.+|..++..|++++|+..|+.++..+|.++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456788999999999999999999999999999999876 57899999999999999999999999999998733
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH
Q 001392 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1088)
Q Consensus 198 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1088)
.+++.+|.++... |++++|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 2578888888876 566677777777777777665544333222111000 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHH
Q 001392 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1088)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1088)
......+|..|...|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 011234455555566666666666666655444455555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
.++...|++++|+.+++.+....|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666666555554443
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.50 E-value=5e-09 Score=125.35 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=154.4
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----
Q 001392 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---- 196 (1088)
...+|.+..+|..++..+...|++++|+..+...+..+|+.+.+++.+|.++++.+++.+|.-+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4557889999999999999999999999999999999999999999999999999998887776 6666555441
Q ss_pred --------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 197 --------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
..+++.+|.||-++|+.++|...|+++++.+|+|+.++..+|..+... + .++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 144566666666666666666666666666666666666666666655 4 6666666666654
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001392 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1088)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1088)
. |+..++|..+..+..+++... |.....+..+ .++..... .....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i----------------~~ki~~~~-~~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRI----------------ERKVLGHR-EFTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHH----------------HHHHHhhh-ccchhH
Confidence 4 334445555555555554322 2222222221 11111110 011122
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001392 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1088)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1088)
..+.-+-..|...++|++++.++..+++.+|.+..+...++.||..
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2344455677788889999999999999999888888888888874
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=3.9e-12 Score=135.06 Aligned_cols=194 Identities=22% Similarity=0.330 Sum_probs=155.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 232 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 232 (1088)
++..+..++.+|..++..|+|+.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456688999999999999999999999999999999873 256799999999999999999999999999998776
Q ss_pred HHHHHHHHHHhhc-----hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001392 233 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1088)
Q Consensus 233 a~~~la~~~~~~~-----~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 307 (1088)
+++.+|.++.... +.+.+.+|+..|++++..+|.+..+.. +
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----------------------------------a 154 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD----------------------------------A 154 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH----------------------------------H
Confidence 6888888887651 112388899999999988888764431 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1088)
+..++..... . ......+|.+++..|++.+|+..|..++...|+. +.+++.+|.
T Consensus 155 ~~~~~~~~~~--------------~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 155 KKRMDYLRNR--------------L---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHHH--------------H---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 1111111110 0 1123468889999999999999999999997764 589999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
++...|++++|..+++.+....|+
T Consensus 212 ~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 212 AYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999888776653
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.48 E-value=8e-13 Score=126.85 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.3
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+|+++++++|++ ++.+|.++...|++++|+..|..++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56789999999874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
.+ +.+++.+|.|+..+|++++|+..|.+++.+.|+++..+..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 788999999999999999999999999999999999998888766543
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.3e-09 Score=114.57 Aligned_cols=295 Identities=18% Similarity=0.113 Sum_probs=172.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
-|..-+..|+|.+|.+...+.-+..+....+++.-|...-.+|+++.|-.++.++-+..+++...+.+..+.++...|++
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 45555566777777777777666666666666666777777777777777777777765555455666677777777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHH---HH--HHHhcCCHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL---AN--HFFFTGQHFLVE 288 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l---a~--~~~~~g~~~~A~ 288 (1088)
..|......++...|.++.++.....+|...|+ +.....++.+.-+..--+..-...+ +. ++-..++-..+.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 777777777777777777777777777777776 6666655555544332111111000 00 011111111111
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 001392 289 QLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1088)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1088)
.+.......+..-...+.....++.-+...|++++|..+...+++..- + ...... .-....+++..-++..++.
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~---D-~~L~~~--~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW---D-PRLCRL--IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc---C-hhHHHH--HhhcCCCCchHHHHHHHHH
Confidence 111111111111122345555666666677777777777777665311 1 111111 1123456666667777777
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
++..|+++..+..||.+|.+.+.|.+|..+|+.+++..| +...+..+|.++ ..|+...|...++.++..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776655 345566677777 777777777777666643
No 98
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.42 E-value=3.7e-12 Score=132.15 Aligned_cols=278 Identities=20% Similarity=0.200 Sum_probs=205.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhhHhhHHH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~ 350 (1088)
+.-+++.|++...+.+|+.+++.... ....+.+|..+|.+|+..++|.+|+++...-+. .+++....+.+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 44566677777777777777764322 233456788899999999999999988765432 23344445566778999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 404 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~k~l~ 404 (1088)
++.-.|.|++|+.++.+-+.+.. ....+++++|.+|...|+ ++.|..+|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776532 235689999999987754 3455666665555
Q ss_pred hCCC------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 405 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 405 ~~p~------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+... ...++-+||..| ..|++..|+...+.-+.+....++... ..++.++|.+|.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4322 234666777777 889999999999888888777655432 46889999999999999999999999887
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 001392 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1088)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1088)
.... +......+...|.||..|.....+++|+.++.+-+.+..
T Consensus 264 LAie-------------------------------------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIE-------------------------------------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHH-------------------------------------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4210 012334667889999999999999999999988776433
Q ss_pred ------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 557 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 557 ------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
....+++.||..+...|...+|+.+....+.+.
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 236788999999999999999998887776653
No 99
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2.3e-09 Score=112.73 Aligned_cols=293 Identities=15% Similarity=0.110 Sum_probs=228.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhch
Q 001392 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANE 246 (1088)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~ 246 (1088)
-|..-+..|+|.+|.+...+.-+..+.. ...++.-+.+--++|+++.|-.++.++-+..++ ...+....+.+.+..|+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 3455667899999999999987766665 566777888999999999999999999998554 45667888999999999
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHH-----HHHHhcCCH
Q 001392 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA-----RSYHSKGDY 321 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la-----~~~~~~g~~ 321 (1088)
+..|...+.+++...|.++.++.....+|+..|++.....++.++.+..-.++....-+-..+ .-....+..
T Consensus 169 ---~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 ---YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred ---chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999998865433332222222221 111111222
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 401 (1088)
+.=...++..-.. -...+.....++.-+..+|+.++|.+....+++..-+ +.....++ ....++...=++..++
T Consensus 246 ~gL~~~W~~~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHH
Confidence 2222233333221 1233455677888999999999999999999987533 33222222 3466889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 402 ~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
.++..|+++..+..||.++ ..+.|.+|..+|+.++...+. ...+..+|.++...|+...|.+.+++++.
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s------~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS------ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999988876443 78899999999999999999999999985
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.37 E-value=4.6e-11 Score=121.13 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 184 (1088)
+...+++..+.++++.+|+++..|+.+|.+|...|++++|+..|.+++..+|+++.++..+|.++ +..|+ +.+|..+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777654 45565 4777777
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
++++++.+|++ ..+++.+|.++...|++++|+..|++++++.|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777776 55667777777777777777777777777766543
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=1.1e-11 Score=119.01 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=115.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001392 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1088)
..+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46789999999875 5678999999999999999999999999999 7889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
|+++.+++.+|.++...|+ +++|+..|.+++...|+++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999998887776653
No 102
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.37 E-value=3.2e-11 Score=125.35 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhcCC
Q 001392 321 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 321 ~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~ 391 (1088)
++.|.++|..-++.. ++.-....++-+||..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 345556665544321 122233456888999999999999999888776665322 23588899999999999
Q ss_pred HHHHHHHHHHHHHhC----C--CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 001392 392 IEKAQELLRKAAKID----P--RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 463 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~----p--~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 463 (1088)
++.|+++|++.+.+. . ......+.||..| ...++.+|+.++.+-+.+....++.. ....++.+|..|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 999999999887542 2 2356778889988 88899999999999888776643322 26788899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 001392 464 FESAHQSFKDALGD 477 (1088)
Q Consensus 464 ~~~A~~~l~~al~~ 477 (1088)
.++|+.+....+..
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888874
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.34 E-value=4.1e-11 Score=142.83 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=178.0
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
..|.+..++..|+..+...+++++|+.++...+..+|+....|+.+|.++...+++..+..+ .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 67889999999999999999999999999999999999999999999999999887776555 44444333
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHh
Q 001392 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 679 (1088)
..+| .+...+...+...+. ..++++.||.+ |-.+ |+.++|...|+++++.+|.|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3344 333344333333333 56789999999 9999 9999999999999999999999999
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC------------
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN------------ 747 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~------------ 747 (1088)
++|+.|... ++++|+.++.+++... +..++|..+..++++.+..-+..
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998853 33455666666666655542211
Q ss_pred ------CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHH
Q 001392 748 ------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1088)
Q Consensus 748 ------~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 795 (1088)
.-+.++.-|-..|...++|++++.+|+.++...|.|..+++.++.||.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 113333344477778899999999999999999999999999999975
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=3.5e-10 Score=111.26 Aligned_cols=211 Identities=16% Similarity=0.060 Sum_probs=173.8
Q ss_pred HHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhh
Q 001392 51 FKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPST 130 (1088)
Q Consensus 51 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~ 130 (1088)
+...+.++.+++.+..+.-....-+ .++.-.++-.+..+.+..|... -|..+++++....|++..+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~---g~e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGAL---GDEIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRV 88 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhccc---CchHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhH
Confidence 3455666777766665432111000 1122233444444444455544 8999999988888999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
....|..+-..|++++|+.+|+..+..+|.|...+-....+...+|+-.+|++.+...+...+.+ ..+|..++.+|...
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999998889999999999999999999999999 78899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
|+|++|.-+++.++-+.|.++..+..+|.+++..|-..++.-|..+|.++++++|.+..+++.+..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999999999999999999999888888999999999999999988877765543
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.3e-08 Score=114.60 Aligned_cols=403 Identities=15% Similarity=0.129 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
..|.+.|..+...|+.+.|+.+|..+.. |+.+..+.+-+|+.++|-.+.++ ..+..+.+.||..
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARM 976 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHH
Confidence 5666777777777777777777776654 44455555555555555444332 2344555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHh------CCCC--------------HHHHHHHHHHH-hcC-CHHHHHHHHHH---------
Q 001392 386 YVQLGQIEKAQELLRKAAKI------DPRD--------------AQAFIDLGELL-ISS-DTGAALDAFKT--------- 434 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~------~p~~--------------~~~~~~la~l~-~~~-~~~~A~~~~~~--------- 434 (1088)
|...|++.+|+..|.++-.. ...+ +.-....+..| ..| ....|+.+|.+
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 66666666665555544321 1000 01111112222 222 33333333322
Q ss_pred ---------HHHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 435 ---------ARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 435 ---------a~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
++++. .+.....++.++..-+..+....+|++|..++-.+-....-. ..-..+.
T Consensus 1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Al----------------qlC~~~n 1120 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGAL----------------QLCKNRN 1120 (1416)
T ss_pred HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------HHHhcCC
Confidence 22222 223344568899999999999999999998876654421100 0000111
Q ss_pred hhhhhhhccC---CC-CcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHH
Q 001392 505 MQLFHRFEND---GN-HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (1088)
Q Consensus 505 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 580 (1088)
....+.+.+. .. ..........++-.+|.++.++|.|..|.+-|.++-. .+.--..+.+.|+.++-+=
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGdt~KI~F 1192 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGDTQKIRF 1192 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCCcceEEE
Confidence 1111222111 11 1111122445788899999999999999988877532 1222344556666654321
Q ss_pred HHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHH
Q 001392 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (1088)
Q Consensus 581 ~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 660 (1088)
+.+ -....++| .++.-|++.-+|..--++++.++..+.+. .++-.|++. |-..++.+-. +-..|++|
T Consensus 1193 FAn-----~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tFYTKg--qafd~LanF-Y~~cAqiEie----e~q~ydKa 1259 (1416)
T KOG3617|consen 1193 FAN-----TSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETFYTKG--QAFDHLANF-YKSCAQIEIE----ELQTYDKA 1259 (1416)
T ss_pred Eee-----ccccceee-eehhhhhhhcccccChHHHhhhHhhhhcc--hhHHHHHHH-HHHHHHhhHH----HHhhhhHH
Confidence 111 01122233 33444455556665556666555544332 234446666 6555332210 11333333
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
...++.+. .++.+...-..+...+....+.. ....+.+..-.++. .+....|...+.+
T Consensus 1260 ~gAl~eA~--------------kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~~i~qc~~l 1317 (1416)
T KOG3617|consen 1260 MGALEEAA--------------KCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAADGIRQCTTL 1317 (1416)
T ss_pred hHHHHHHH--------------HHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHHHHHHHHHH
Confidence 33332221 11111111111112222222211 01112222222222 2556666666666
Q ss_pred HHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 741 LRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 741 l~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
+..- .-++ ..++..|...|....+|..|-+.+..+....|+-.
T Consensus 1318 leep-~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1318 LEEP-ILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred hhCc-CCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 6642 2222 66778888999999999999999999999999743
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=1.6e-09 Score=139.45 Aligned_cols=387 Identities=13% Similarity=0.027 Sum_probs=244.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHH
Q 001392 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALG 383 (1088)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la 383 (1088)
...+...+..+...|++..|+..+..+- ..+.........+..+...|.+..+..++..+-. ....++......+
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 3455566777788888888887665442 2222233344566677778888776666654311 1123344556777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 001392 384 HIYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453 (1088)
Q Consensus 384 ~~~~~~g~~~~A~~~~~k~l~~~p~---------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 453 (1088)
.++...|++++|...+..+....+. .......++.++ ..|++..|...++.++...+..........+..
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 8888889999999999887654321 123334456666 889999999999988875332111011345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHH
Q 001392 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (1088)
Q Consensus 454 l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (1088)
+|.++...|+++.|...+.+++...... ........++.++|.
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~-------------------------------------g~~~~~~~~~~~la~ 539 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQH-------------------------------------DVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhh-------------------------------------cchHHHHHHHHHHHH
Confidence 8889999999999999999988632100 011113456678899
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC-----ChhHHHhhh
Q 001392 534 LLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLG 600 (1088)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~~l~ 600 (1088)
++...|++..|...+.+++.... .....+..++.++...|++++|...+.+++..... ...++..++
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 99999999999999998887421 12334567788888999999999999998876332 233556688
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCCh-HHH-HH---hhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDS-YAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~-~a~-~~---lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 675 (1088)
.++...|++..|...+..+......... ..+ .. +....+... |+.+.|..++.......+...
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHHHhcCCCCCccc
Confidence 8999999999999999988765332111 100 00 010102222 566667776655544222221
Q ss_pred H----HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 676 Y----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 676 ~----a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
. .+..++.++...|++.+|...+.+++........ .....++..+|.++..+|+..+|...+.+++..+
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1 1345666677777777777777777665422111 1223456666777777777777777777777665
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=6.7e-09 Score=133.75 Aligned_cols=344 Identities=15% Similarity=0.110 Sum_probs=251.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--------hhHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--------PGAIRL 201 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--------~~~~~~ 201 (1088)
....+..+...|.+..+...+..+-. ....++......+.+++..|++.+|..++..+....+.. ...+..
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44456777788988887777655411 112344556778888899999999999999887653221 233455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC------CHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY------CAMA 270 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~------~~~~ 270 (1088)
.++.++...|+++.|...+++++...|... .++..+|.++...|+ +..|...+.+++..... ...+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 678889999999999999999998655432 345677888888888 99999999998875332 1245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCCchh
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIF 343 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~ 343 (1088)
+..++.+++..|++..|...+..++...... +.....+..+|.++...|++++|...+.+++..... ......
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 6778999999999999999999988653221 222345667899999999999999999998764321 122345
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEKAQELLRKAAKIDPRDA----QA 412 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~----~~ 412 (1088)
++..++.++...|++..|...+..+....+.. .... ......+...|+.+.|...+.......+... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 56778999999999999999999997753321 1111 1123445567899999998877654332222 12
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 413 ~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
+..++.++ ..|++.+|...+.+++......+... ...++..+|.++...|+.++|...+.+++..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888 89999999999999998866654332 2467888999999999999999999999985
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=6.1e-10 Score=109.58 Aligned_cols=209 Identities=18% Similarity=0.063 Sum_probs=172.2
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001392 423 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1088)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1088)
.+.++-++.....+...+.. -.+....++-.+..+....|..+.|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 34555555555555544443 1111234556667777888999999999988776
Q ss_pred hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001392 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1088)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1088)
..|.+..+.-..|..+...|++++|+++|..+++.+|.+..++-+...+...+|+.-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHH
Q 001392 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1088)
Q Consensus 582 l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1088)
+...+..++.+.++|..++.+|+..|++.+|.-+++.++-..|- .+..+..++.+.|... .. .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~g-g~---------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQG-GA---------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHh-hH---------HHHHHHH
Confidence 99999999999999999999999999999999999999998887 5555678899844444 32 7889999
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHHH
Q 001392 662 ELYTRVIVQHTSNLYAANGAGVVL 685 (1088)
Q Consensus 662 ~~~~~al~~~p~~~~a~~~la~~l 685 (1088)
++|.++++++|.+..+++++-.+-
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999988888774443
No 109
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.32 E-value=1.1e-06 Score=101.68 Aligned_cols=239 Identities=14% Similarity=0.077 Sum_probs=146.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
.+..+++.+|+..+.++++..|+...+....|.++++.|++++|..+++..-...+++ ..+.-.+-.||..+|++++|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHHH
Confidence 3456788888888888888888888888888888888888888887776666666665 566677888888888888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001392 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1088)
.+|++++..+|+ ...++.+-..|.+.++ |.+-.+.--+..+..|+++..+.....+++..-.-
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~------------- 160 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS------------- 160 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC-------------
Confidence 888888888887 7777777777777766 54444444444556777776555444443322110
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH-HHH-hCCCc
Q 001392 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK-VLE-IYPDN 375 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~-~~p~~ 375 (1088)
.++.....+.. -|...+++.+..-+ .-....-....-.++...|.+++|...+.. ... ..+.+
T Consensus 161 --~~~~~~~i~l~------------LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~ 225 (932)
T KOG2053|consen 161 --ENELLDPILLA------------LAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN 225 (932)
T ss_pred --CcccccchhHH------------HHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc
Confidence 00111111111 12233333333110 011111122223445566777777777632 222 23334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
.......+..+...+++.+-.++..+++...+++
T Consensus 226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 226 LYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 4444555666677777777777777777777776
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=9e-11 Score=131.47 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHh
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1088)
.-..+|..+...|-...|+.|+++. .++.....||..+|... +|..+..+-+
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~l 451 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQEL 451 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHh
Confidence 4567899999999999999888863 36677788899988665 7888888888
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
+ .|+++..|..+|.+....--|++|..+++.. +..|...+|...++.++|.++.+.++..+.++|-. ...|+
T Consensus 452 e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf 523 (777)
T KOG1128|consen 452 E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWF 523 (777)
T ss_pred c-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHH
Confidence 7 6778889999999888877788888888765 45577778888888999999999999999999998 77899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.|.++++++..|..+|.+++.++|++..+|.+++..|...++ -.+|...+..+++.+-.+..+|-+...+....
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 999999999999999999999999999999999999999999988 88999999999999888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhc
Q 001392 282 GQHFLVEQLTETALAVT 298 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~ 298 (1088)
|.+++|++.+.+++...
T Consensus 601 ge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 88888888888877554
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.29 E-value=2.7e-10 Score=113.67 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=153.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
+...+-.....+|.+..+ +..+..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..+.++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555666778888888 8888899999998899988888888888888888888899999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
|++ ..++..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++-.|+ +..|..++..+....+.+..+..
T Consensus 131 p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 131 PTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred CCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHHH
Confidence 998 78889999999999999999999999999999999999999999998888 88899999888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
.++.+....|++..|..+...-+
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHhhcCChHHHHhhccccc
Confidence 88888888888888777665543
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=9e-11 Score=112.47 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=109.7
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
..|.+++..+|.+....+.+|..++..|++++|...|+.++..+|.++.++..+|.+++..|++.+|+..|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
+ +.+++.+|.|+...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77889999999999999999999999999999876643
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=1.6e-10 Score=117.16 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HHccC--HH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 731 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 731 (1088)
+..++++..+++++..+|+++.+|..+|.++...|+++.|+..|.+++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 8899999999985 67787 59
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 732 ~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
+|+.+++++++. ++.++.+++.||.+++..|++++|+.+|++++.+.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999998 7788999999999999999999999999999999987543
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=5.4e-10 Score=125.33 Aligned_cols=238 Identities=18% Similarity=0.119 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
...-..++.++...|-...|+..|++. ..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------------------------------------------------em 426 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------------------------------------------------EM 426 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------------------------------------------------HH
Confidence 355567889999999999999988754 45
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g 607 (1088)
|-....||...|+..+|..+..+-++ .|+.+..|..+|.+.....-+++|.++.+.. +..+...+|......+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence 66788899999999999999999888 6777888888888877776677777766653 3346677888888899
Q ss_pred chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh
Q 001392 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (1088)
Q Consensus 608 ~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~ 687 (1088)
++.++.+.|+..+.++|- ..-+|+.+|-+ +.+. +++..|...|..++..+|++..+|++++..|..
T Consensus 500 ~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred hHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 999999999999999887 67789999988 8888 999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 001392 688 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1088)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~ 762 (1088)
.|+-.+|...+.++++.+- .+..+|.|.-.+....|.+++|++.|.+.+..-....++.++..+......
T Consensus 566 ~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 9999999999999999874 678899999999999999999999999999875555677777766655444
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.22 E-value=1.6e-09 Score=108.16 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
.+...+-.....+|.+..+ ..++..++..|+-+.++.+..++...+|.+ ..+...+|......|++..|+..|.++..
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3666666777889999999 999999999999999999999999989998 66777799999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCch
Q 001392 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305 (1088)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 305 (1088)
+.|++..+|..+|.+|.+.|+ ++.|-..|.+++++.|..+.+.++++..|+..|+++.|..++..+.... +...
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~ 202 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADS 202 (257)
T ss_pred cCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCch
Confidence 999999999999999999999 9999999999999999999999999999999999999999999988654 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMAS 331 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1088)
.+..+++.+....|++..|..+..+-
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhcccc
Confidence 88889999999999999998776543
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=1.6e-09 Score=129.08 Aligned_cols=155 Identities=14% Similarity=0.004 Sum_probs=136.9
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
++..+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33334444556788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
|++ ...++.+|.++.++|++++|...|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...+
T Consensus 151 p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 151 SSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHH
Confidence 999 77889999999999999999999999999899999999999999999999 9999999999998876555443
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=6.1e-10 Score=106.67 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=109.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
..|++++..+|++..+.+.+|.+++..|++.+|+..|++++..+|.+ +.++..+|.++...|++++|...|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999998 77899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
.++..++.+|.++...|+ +.+|+..|+++++.+|.+....
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchHH
Confidence 999999999999999998 9999999999999999887543
No 118
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=3.5e-10 Score=114.91 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
.+-..|.-++..++|.+|+..|.++|.++|+|+..|..+|.+|.++|.|+.|++.++.++.++|.. ..+|..+|.+|+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence 455568888888999999999999999999999999999999999999999999999999999988 7778899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
+|++.+|+..|+++|+++|++...+..|..+-...+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988777777666555544
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=6.9e-10 Score=103.66 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=100.5
Q ss_pred HhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 120 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 120 a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
+..++ ++.-...+.+|..++..|++++|...|+.+...+|.++..|+++|.++-.+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 66778899999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+++..|.|+..+|+.+.|+..|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998763
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.6e-06 Score=96.60 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=56.5
Q ss_pred cCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHH
Q 001392 622 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (1088)
Q Consensus 622 ~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~ 701 (1088)
+.+..|+..+..-++. |... .+|++|+.++-.+-... -|.-++...+..-..++-+.+
T Consensus 1074 Ld~~sDp~ll~RcadF-F~~~------------~qyekAV~lL~~ar~~~---------~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADF-FENN------------QQYEKAVNLLCLAREFS---------GALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred cCCCCCHHHHHHHHHH-HHhH------------HHHHHHHHHHHHHHHHH---------HHHHHHhcCCCchhHHHHHhc
Confidence 4566677766666776 7766 78888888765543311 122223333333222222222
Q ss_pred HHHh-cCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 702 QEAA-SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 702 ~~~~-p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
--.. ...+......++..+|.++.++|.|..|-+-|.++=.+
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 1000 00011123467889999999999999999888877443
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.15 E-value=7.7e-06 Score=94.77 Aligned_cols=486 Identities=14% Similarity=0.047 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.++|.+|+....+.++..|+.+.+.+..|..+++.|++++|..+++..-...+++...+-.+-.+|...+++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46788999999999999999999999999999999999999988888877788888899999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
+++..+|+ ....+.+=.+|.+.+.|.+-.++--+..+..|+++..+.....+.+..-.. ...+
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~--~~~~------------- 164 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS--ENEL------------- 164 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC--Cccc-------------
Confidence 99999999 466788888999999988877777777778888776544444333332110 0000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
....+.. -|...++..+...+ .-....-....-.++..+|.+++|..++..-+... ..+.......
T Consensus 165 ~~~i~l~------------LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~ 230 (932)
T KOG2053|consen 165 LDPILLA------------LAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLEN 230 (932)
T ss_pred ccchhHH------------HHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHH
Confidence 0001111 12222222222211 00011111122234455666777777663332210 1122222223
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH----H---------HHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----L---------GHIYVQLGQIEKAQELLRKAAKID-PRDAQA 412 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----l---------a~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~ 412 (1088)
.....+...+++.+-.+...+++...+++..++.. + +..+...+..+..++...+.+... .+-.-+
T Consensus 231 ~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA 310 (932)
T KOG2053|consen 231 KKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLA 310 (932)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence 34455566667777777777777666665111111 0 001111122333333333333321 111233
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcchhhhh
Q 001392 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKA-------GEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTL 483 (1088)
Q Consensus 413 ~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~al~~~~~~~~ 483 (1088)
++.+-.-+ ..|+.++++..|-+-....+-. ....++.....+...+. ..+....+.+.+.+-+-.-.-...
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl 390 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRL 390 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHH
Confidence 44444444 5566666554443221110000 00001111111111111 111111122222111110000000
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCC---cCCCCcch---HHHHhHHHHHHhcCCH---HHHHHHHHHHHHH
Q 001392 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH---VELPWNKV---TVLFNLARLLEQIHDT---VAASVLYRLILFK 554 (1088)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~la~~~~~~g~~---~~A~~~~~~~l~~ 554 (1088)
++.. .....+...+... +-...++.-...+.. .+..+.+. .+...+..++.+.++. -+|+-+++..+..
T Consensus 391 ~G~~-~~l~ad~i~a~~~-kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~ 468 (932)
T KOG2053|consen 391 LGLY-EKLPADSILAYVR-KLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK 468 (932)
T ss_pred hhcc-ccCChHHHHHHHH-HHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc
Confidence 0000 0000000000000 000001100011111 11111111 1223344556666654 5788899999999
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
+|.++.+...+..+|.-.|-+..|...|..+--.+-..-..-+.+-..+.-.|++.-+...+...+..+.+
T Consensus 469 s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 469 SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987643222111122223333445567888888888877776544
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1e-09 Score=117.71 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=172.1
Q ss_pred cchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC--CCChhHHHhhh
Q 001392 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 600 (1088)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~l~ 600 (1088)
......+.+.+++..+|++...+.-... ..+....+...++..+...++.+.++..+...+... +.++.+....|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4566778889999999998766544322 223334455555655544455666666665544332 23455667778
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.++...|++++|++.+.+. ...........+ |+.. ++++.|.+.++.+-+.+.+.+.+...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi-~L~~------------~R~dlA~k~l~~~~~~~eD~~l~qLa 170 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQI-LLKM------------NRPDLAEKELKNMQQIDEDSILTQLA 170 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH-HHHT------------T-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 8888999999999888753 133333334555 7777 89999999999999998888777777
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001392 681 AGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 758 (1088)
Q Consensus 681 la~~l~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~ 758 (1088)
-+++....| .+.+|.-+|+.+.+..+ .++.++..++.|++.+|+|++|...+++++.. ++.++.++.+++.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~-----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv 243 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFG-----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHH
Confidence 777777766 69999999999877665 57888899999999999999999999999987 6777999999999
Q ss_pred HHHhhccH-HHHHHHHHHHHHhCCCChhHHh
Q 001392 759 THYEAEQW-QDCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 759 ~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~ 788 (1088)
+....|+. +.+.+++.++...+|+++.+.-
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99999998 5677888888889998876543
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=6.5e-09 Score=124.02 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1088)
++.-++-...-+.|.+..+..-|-+++.. ...|+ ....++..||.+...+|..+ +|..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~ 112 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDY--VRRYP----HTELFQVLVARALEAAHRSD-----------EGLAVWRGI 112 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHH--HHhcc----ccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHH
Confidence 34444445555566665555555544321 11122 33667888888888888777 999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001392 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1088)
+.+.|++..+++.++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.++
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~ 191 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGY 191 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988988 8889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
+.+|.++...|+.++|...|++++.....-...+
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 9999999999999999999999999876655543
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=9.1e-09 Score=111.30 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|....++++.|..++..|.++.|+..++.++...|++ +..+-..+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7788899999999999999999999999999999988 777888899999999999999999999999999988899999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1088)
.+++..|+ +.+|+..++..+..+|+++..|..|+..|...|+..++ ....+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a--------------------~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA--------------------LLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH--------------------HHHHHHHHHhC
Confidence 99999998 78999999999999999999999999999998886544 34456677888
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001392 319 GDYEKAGLYYMASVKEI 335 (1088)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1088)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988754
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=4e-08 Score=102.94 Aligned_cols=204 Identities=13% Similarity=0.089 Sum_probs=129.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 200 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~ 200 (1088)
..+..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|..|+..|++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456778889999999999999999999999999988654 48889999999999999999999999988873 4556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+.+|.|+..++.- .+.....+++. ..+.....+|+..|+..+...|++..+-.
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~-------- 162 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTD-------- 162 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHH--------
Confidence 7777776544311 11111111110 01112244555666666666665542211
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
|...+..+. ...+.--+.+|+.|.+.|.|..|+.-++.++...+..+....+++.++.+|...|..++
T Consensus 163 ------A~~rl~~l~------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 163 ------ATKRLVFLK------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 111000000 00113334566677777777777777777777776667777777777777777777777
Q ss_pred HHHHHHHH
Q 001392 361 ALTNFEKV 368 (1088)
Q Consensus 361 A~~~~~~~ 368 (1088)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 76655443
No 126
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=2.1e-09 Score=109.36 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
-+.++|.+|+..|++|+.++|.++..|..++.+|.+.|.|+.|++.++.++.++|....+|..+|.+|+.+|+|.+|+..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHcCCHH
Q 001392 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~ 214 (1088)
|+++|.++|++ ..+.-.|..+-..++...
T Consensus 172 ykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 99999999999 565666665555555444
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=4e-08 Score=102.97 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHH
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 234 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 234 (1088)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4577788999999999999999999999999999883 22348899999999999999999999999999865 456
Q ss_pred HHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 001392 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1088)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~ 314 (1088)
+.+|.++...+. ..+......++.+. .......|+..++.++...+.++-..++...+..+
T Consensus 110 Y~~g~~~~~~~~--------~~~~~~~~~~~~~r-----------D~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 110 YMRGLTNMALDD--------SALQGFFGVDRSDR-----------DPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHhhhhcch--------hhhhhccCCCcccc-----------CHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 666766544432 11221111211110 01112456778888887765555444443333322
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhcCC
Q 001392 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQ 391 (1088)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~ 391 (1088)
... ...--+.+|..|.+.|.|..|+.-++.++...|+. .+++..++..|..+|.
T Consensus 171 ~~~-----------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 171 KDR-----------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHH-----------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 111 11224468899999999999999999999998875 5799999999999999
Q ss_pred HHHHHHHHHHH
Q 001392 392 IEKAQELLRKA 402 (1088)
Q Consensus 392 ~~~A~~~~~k~ 402 (1088)
.++|..+...+
T Consensus 228 ~~~a~~~~~~l 238 (243)
T PRK10866 228 NAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHH
Confidence 99998877644
No 128
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=2.7e-09 Score=114.51 Aligned_cols=258 Identities=15% Similarity=0.121 Sum_probs=134.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHH
Q 001392 136 QLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1088)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~ 214 (1088)
.-++..|+|..++..++ ....+| ........++++++.+|++...+.-+...- .|.. .+...++..+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l--~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL--QAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC--HHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH--HHHHHHHHHHhCccchH
Confidence 44566677777776555 222222 123455666677777777665554432211 2222 22233333333333444
Q ss_pred HHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 215 KARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1088)
Q Consensus 215 ~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1088)
.++..++..+.... .++...+..|.++...|+ +++|+..+.+. .+.........+++..++++.|.+.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55544444332211 233344445555655666 66666655532 345555556666666666666666666
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 293 TALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
.+.+.. .+..-+....+.+....| .+.+|..+|+.... ..+..+..+.+++.+++.+|+|++|...+..++.
T Consensus 156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 655432 221122222222333333 46777777777554 3344556666777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHH
Q 001392 371 IYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQA 412 (1088)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~k~l~~~p~~~~~ 412 (1088)
.+|+++.++.+++.+....|+. +.+.+++.++...+|.++..
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 7777777777777777777766 44556666666666666543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=6.7e-08 Score=104.75 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=114.5
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
|.. ...+++.+..++..|.++.|+..+...+...|+|+..+...+.+++..++ ..+|.+.+++++.++|..+....
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 555 55677788888888888888888888888888888888888888888777 77888888888888888877788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.+|..|+..|++.+|+.++...+.. .|.++..|..++.+|..+|+..+|... .+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~A--------------------~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALLA--------------------RAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHHH--------------------HHHHH
Confidence 8888888888888888777777743 366667788888888777776665433 34455
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001392 353 LKLGDFRSALTNFEKVLEIY 372 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1088)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 66777777777777777665
No 130
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=2.8e-08 Score=101.79 Aligned_cols=190 Identities=19% Similarity=0.257 Sum_probs=120.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1088)
.+..++..|..++..|+|.+|+..|+.++...|.+ ..+.+.+|.+++..|+|..|+..|++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677888888888888888888888888887765 46778888888888888888888888888888763 44566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.+++.+..- .+ ....+.....+|+..|+..+...|+++.+-.
T Consensus 84 ~~g~~~~~~~~~---------~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQIPG---------IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHHHH---------HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhCcc---------ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 667766554110 00 0011223366777777777777777653321
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
|...+..+. .....--+.+|..|...|.|..|+..|+.+++..+..+....++..++.+|..+|....|
T Consensus 129 -----A~~~l~~l~------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 129 -----AKKRLAELR------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -----HHHHHHHHH------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred -----HHHHHHHHH------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 111111111 011244556788888888888888888888887777777777788888888888887744
Q ss_pred H
Q 001392 362 L 362 (1088)
Q Consensus 362 ~ 362 (1088)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.00 E-value=7.4e-09 Score=115.61 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
+...|..++..|+|++|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ +.+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 67789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
|+++.|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777665444
No 132
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.2e-07 Score=99.52 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-C----CHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-V----PIEVLNN 453 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~-~----~~~~~~~ 453 (1088)
......|.++.+...+..-.+.++....+.+.+.+..+..+ ..|++.+|.+.+...-- ....+.. . .-.++++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecC
Confidence 33344456666777777777777777778888888888888 89999999887754321 1111211 1 2356799
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHH
Q 001392 454 IGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 532 (1088)
Q Consensus 454 l~~~~~~~g~~~~A~~~l~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 532 (1088)
+|.++++.|.|.-+..+|.+++. .+.... .+ +.......-.......++|+.|
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~--~g------------------------~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLR--NG------------------------LKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHh--cc------------------------CCCCcceehhcccchhhHHhhh
Confidence 99999999999999999999996 211000 00 0000000002234668999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 001392 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571 (1088)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 571 (1088)
..|...|++-.|.+.|.++....-.++..|++++.++..
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988654
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.98 E-value=6.4e-08 Score=99.14 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALV 235 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~ 235 (1088)
.+..++..|..++..|+|.+|+..|++++...|.+ .+.+.+.+|.+++..|++..|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999999876 466789999999999999999999999999999865 4567
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~ 315 (1088)
.+|.+++.... ..+ ......+...+|...|+.++...+.++-...+-..+..+-
T Consensus 84 ~~g~~~~~~~~-----~~~---------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 84 MLGLSYYKQIP-----GIL---------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHHHHHHHHH-----HHH----------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----cch---------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence 77776655422 111 0111223345688888888887766664444433332221
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCH
Q 001392 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQI 392 (1088)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~ 392 (1088)
.. ...--+.+|..|.+.|.+..|+..++.+++..|+.. .++..++.+|..+|..
T Consensus 138 --------------~~---------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 138 --------------NR---------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp --------------HH---------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred --------------HH---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 11 122245689999999999999999999999999875 6889999999999998
Q ss_pred HHHH
Q 001392 393 EKAQ 396 (1088)
Q Consensus 393 ~~A~ 396 (1088)
+.|.
T Consensus 195 ~~a~ 198 (203)
T PF13525_consen 195 QAAD 198 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8554
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.97 E-value=1.4e-08 Score=94.97 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=95.5
Q ss_pred HhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 156 EAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 156 ~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+..|.+++.++|+++.++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 445 6677889999999999999999999999999999999 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
+.+|.+++..|+ ...|...|+.++...
T Consensus 107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 999999999999 999999999988876
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=7e-05 Score=82.14 Aligned_cols=436 Identities=12% Similarity=0.037 Sum_probs=253.2
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
++-++.+|.+..+|+.+..-+-.+ .+++....|++.+...|..+.+|...+...+..++|+.-..+|.++|..--+- .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 556788999999999998877766 99999999999999999999999999999999999999999999998754442 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHH----HHHHHHh---hCCCCHHHHHHHHHHHHhhc---h---HHhHHHHHHHHHHHHHhC
Q 001392 198 AIRLGIGLCRYKLGQLGKARQ----AFQRALQ---LDPENVEALVALAVMDLQAN---E---AAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~----~~~~al~---~~p~~~~a~~~la~~~~~~~---~---~~~~~~Al~~~~~al~~~ 264 (1088)
-..+.+-.+....|+...++. +|+-++. .++.....|...+..+..-. . ...++.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 222334444444455444333 3333333 34555555655554443221 1 112444455666665443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCCC
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHE 340 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~ 340 (1088)
-.+..-+. ++|..-+.-...+. ..-.+--....|..|...++....... ..|.
T Consensus 168 m~nlEkLW---------~DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 168 MHNLEKLW---------KDYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cccHHHHH---------HHHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 22221110 11111000000000 000111122234444444444432111 0000
Q ss_pred ----c-------hhhHhhHHHHHHHcC------C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC----------
Q 001392 341 ----F-------IFPYYGLGQVQLKLG------D--FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---------- 391 (1088)
Q Consensus 341 ----~-------~~~~~~la~~~~~~g------~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---------- 391 (1088)
. +..|.++...-...+ . -....-.|++++..-+-++++|+..+..+...++
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence 0 011222221111111 0 1122335666666667777777766665555544
Q ss_pred ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001392 392 ----IEKAQELLRKAAKID-PRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1088)
Q Consensus 392 ----~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (1088)
.+++..+|++++..- ..+...++.++..- ..- ..+.....+.+++.+.... +.-++.++...-.+..
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~----~tLv~~~~mn~irR~e 380 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID----LTLVYCQYMNFIRRAE 380 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC----CceehhHHHHHHHHhh
Confidence 677778888777543 23344444444433 222 2556666666666653321 2344555555556666
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHH
Q 001392 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542 (1088)
Q Consensus 463 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 542 (1088)
-...|..+|.++-+.. ..+..+-+...+.. |...++..
T Consensus 381 GlkaaR~iF~kaR~~~-----------------------------------------r~~hhVfVa~A~mE-y~cskD~~ 418 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDK-----------------------------------------RTRHHVFVAAALME-YYCSKDKE 418 (656)
T ss_pred hHHHHHHHHHHHhhcc-----------------------------------------CCcchhhHHHHHHH-HHhcCChh
Confidence 6778888888886632 11223333333333 44568889
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CC-CChhHHHhhhhhhhcccchHHHHHHHHHh
Q 001392 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG-KYPNALSMLGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 543 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 619 (1088)
-|..+|+..+..+++.+..-+.....+...|+-..+..+|++++.. .| ....+|..+...-..-|+....+++-++.
T Consensus 419 ~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 419 TAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999998888888888888889989999999998876 22 23357777777777788887777776665
Q ss_pred hhcCC
Q 001392 620 SDATD 624 (1088)
Q Consensus 620 l~~~~ 624 (1088)
....|
T Consensus 499 ~~af~ 503 (656)
T KOG1914|consen 499 FTAFP 503 (656)
T ss_pred HHhcc
Confidence 55444
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=3e-08 Score=92.48 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~ 202 (1088)
+.+++.+|..++..|++++|+..|..++..+|++ +.+++.+|.+++..|++..|+..|+.++...|+.+ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999988876 56889999999999999999999999999988852 567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
+|.++..+|++++|...|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
No 137
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=0.00016 Score=78.26 Aligned_cols=424 Identities=13% Similarity=0.106 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC---CCC----
Q 001392 163 PALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRY-KLGQLGKARQAFQRALQLD---PEN---- 230 (1088)
Q Consensus 163 ~a~~~la~~~~~~g--~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---p~~---- 230 (1088)
.+++++|..+...| +...++++++..+...|... +..++.+|.+++ ...+++.|...++++..+. |+.
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666666666666 66777777777766666552 233455555443 4567777777777776543 222
Q ss_pred HHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHH
Q 001392 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 310 (1088)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 310 (1088)
..+...|+.+|..... .+..+...+.+++++....|... -...+.
T Consensus 88 f~a~SlLa~lh~~~~~--s~~~~KalLrkaielsq~~p~ws---------------------------------ckllfQ 132 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQ--SFPPAKALLRKAIELSQSVPYWS---------------------------------CKLLFQ 132 (629)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCCchhh---------------------------------HHHHHH
Confidence 2334455555555442 25556666666666654443110 122333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhHh--hHHHHHHHcC---CHHHHHHHHHHHHHhCCCcH-------H
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYY--GLGQVQLKLG---DFRSALTNFEKVLEIYPDNC-------E 377 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~--~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~-------~ 377 (1088)
++..+.-..++..|++.+.-..... .....+....+ ..+.++.... +...+...+..+.+....++ .
T Consensus 133 Laql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lkv 212 (629)
T KOG2300|consen 133 LAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKV 212 (629)
T ss_pred HHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 3334444444444444322111000 00000001111 1122222222 22333344444443322221 1
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHh----CC----------------------C-CHHHHHHHHHHH---hcCCHH
Q 001392 378 TLKALGHI-YVQLGQIEKAQELLRKAAKI----DP----------------------R-DAQAFIDLGELL---ISSDTG 426 (1088)
Q Consensus 378 ~~~~la~~-~~~~g~~~~A~~~~~k~l~~----~p----------------------~-~~~~~~~la~l~---~~~~~~ 426 (1088)
.+..+-.+ |...|+...+...++++-.. .+ + ...++..+..+. ..|-++
T Consensus 213 Fyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~ 292 (629)
T KOG2300|consen 213 FYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFK 292 (629)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHH
Confidence 22223322 34456666665555544221 11 1 112222222222 356678
Q ss_pred HHHHHHHHHHHHHHhcCCCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhh
Q 001392 427 AALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497 (1088)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~ 497 (1088)
++.++-++++....+..... . ..++-++..+-.-.|++.+|++....+.+.+.+.+.
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~-------------- 358 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT-------------- 358 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc--------------
Confidence 88888888887765543322 1 244556777888889999999999888764321000
Q ss_pred hHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC-c--HHHHHHHHHHHHHcCC
Q 001392 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-Y--VDAYLRLAAIAKARNN 574 (1088)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~la~~~~~~g~ 574 (1088)
.+-.....+.+.+.+|......|.++.|...|..+.+.... + ..+-.++|.+|...|+
T Consensus 359 -------------------~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 359 -------------------PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred -------------------hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc
Confidence 00011235567788888888899999999999999875432 2 4456778889999887
Q ss_pred hHHHHHHHHHHHHHCCCC----------hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH-----HHHHhhhHHH
Q 001392 575 LQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGNWNY 639 (1088)
Q Consensus 575 ~~~A~~~l~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~-----a~~~lg~~~y 639 (1088)
-+.-.+.++. ++|.+ ..+++..|.+.+.++++.+|...+.+.++.....|.. .++.||.+ +
T Consensus 420 ~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v-~ 495 (629)
T KOG2300|consen 420 AEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV-F 495 (629)
T ss_pred HHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH-H
Confidence 6554444443 55553 2267778888899999999999999999977554443 34456666 5
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
... |+..++.+..+-+++.
T Consensus 496 lsl------------gn~~es~nmvrpamql 514 (629)
T KOG2300|consen 496 LSL------------GNTVESRNMVRPAMQL 514 (629)
T ss_pred HHh------------cchHHHHhccchHHHH
Confidence 555 6666776666655554
No 138
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=1.5e-07 Score=90.38 Aligned_cols=133 Identities=26% Similarity=0.225 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
+|..+++.-|.+|-.+|-.. -|..-|.+++.+.|.-|.++..+|.-+...|+|+.|...|+.++.++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56777777777777777655 7888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH-HHHHhh
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF-QRALQL 226 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~-~~al~~ 226 (1088)
+-.+...+|..++--|+|.-|..-+.+..+.+|++|-. ...-.+-...-+..+|...+ +++...
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR--~LWLYl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR--SLWLYLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH--HHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999989988422 11112222333555565443 444443
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=3.8e-05 Score=86.18 Aligned_cols=327 Identities=12% Similarity=0.110 Sum_probs=152.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHH
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVP 163 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~ 163 (1088)
..-+++|..|..+++. +...|.....|..++.+.+..|++--|.++|..+-. ...+-..
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 3457899999887764 466787788899999999998888777777754311 1122234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
.|-.+|.+.+..++|.+|..+|-. .+... . .+ -.|..+.++++|+..-+-. -.|.........-..++.
T Consensus 533 fykvra~lail~kkfk~ae~ifle---qn~te--~---ai-gmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~d 601 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLE---QNATE--E---AI-GMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMD 601 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh---cccHH--H---HH-HHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 455555555556666666555522 11111 1 11 2344455555555433210 112111111111111111
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---------CCCchHHHHHHHHH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---------GPTKSHSYYNLARS 314 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~~~~la~~ 314 (1088)
.|. -.+|- ++...+... .....+|...|....|......-..+... .-...+.|-.-|.+
T Consensus 602 t~q---d~ka~-------elk~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdl 670 (1636)
T KOG3616|consen 602 TGQ---DEKAA-------ELKESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDL 670 (1636)
T ss_pred cCc---hhhhh-------hhccccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhH
Confidence 221 11111 111111111 11123444445444433322111100000 01112444455555
Q ss_pred HHhcCCHHHHHHHHHHHH------H--hcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001392 315 YHSKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1088)
Q Consensus 315 ~~~~g~~~~A~~~~~~al------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1088)
|....++++|+++|.+.- + .+.-+...+..-...|..+...|+++.|+..|-.+-. +..-....
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaa 742 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAA 742 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHH
Confidence 666666666666665431 1 0111112222233456666666777777666654421 11112223
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001392 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (1088)
Q Consensus 387 ~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (1088)
.....+.+|+.++..+.... .....|-.++.-| ..|+++-|...|.++- .......+|-+.|++.
T Consensus 743 i~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhccccHH
Confidence 33456666666666543322 1223344556666 6677776666665432 2233345566667777
Q ss_pred HHHHHHHHHH
Q 001392 466 SAHQSFKDAL 475 (1088)
Q Consensus 466 ~A~~~l~~al 475 (1088)
.|..+-.+..
T Consensus 809 da~kla~e~~ 818 (1636)
T KOG3616|consen 809 DAFKLAEECH 818 (1636)
T ss_pred HHHHHHHHhc
Confidence 7766665554
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.85 E-value=4.7e-08 Score=109.23 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+...|..++..|+|..|+.+|.+++..+|++ ..+++.+|.++..+|++++|+..+.+++.++|.+..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
|+ +.+|+..|++++.++|.++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666433
No 141
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.85 E-value=5.4e-07 Score=93.09 Aligned_cols=305 Identities=15% Similarity=0.104 Sum_probs=199.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHH
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQL 353 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~ 353 (1088)
-++...++++++....+.+...+........+-.+..+...+|.|++++.+--..+... .+......++.+++..+.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554443332222233444455666777777777766544433311 122334556788888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-h
Q 001392 354 KLGDFRSALTNFEKVLEIYPD-----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-I 421 (1088)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~ 421 (1088)
..-++.+++.+....+..-.. ...+...++.++..++.++++++.|+++++...++ ..++..|+.++ .
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 888888888888777765322 23567778888888899999999999998764332 45778888999 8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001392 422 SSDTGAALDAFKTARTLLKKAGE-EVP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1088)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1088)
..|+++|+-+..++..+....+- ... ..+++.++..+...|..-.|.++.+++.+... ..
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal----~~----------- 239 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL----QH----------- 239 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH----Hh-----------
Confidence 99999999999999988877652 222 46778899999999999999999999887421 00
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHH
Q 001392 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK 570 (1088)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~ 570 (1088)
...+..+.....+|.+|...|+.+.|..-|+++...... .+.++...+.++.
T Consensus 240 ----------------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 240 ----------------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred ----------------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 033446677888999999999999999999998864332 1344444444443
Q ss_pred HcCCh-----HHHHHHHHHHHHHCCCC------hhHHHhhhhhhhcccchHHHHHHHHH
Q 001392 571 ARNNL-----QLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRA 618 (1088)
Q Consensus 571 ~~g~~-----~~A~~~l~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1088)
...-. -.|+++-.+++++...- ...+..++.+|...|.-++-...+..
T Consensus 298 ~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 298 TLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 33222 33666666666654221 22556677777666665554444444
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.84 E-value=0.00043 Score=76.18 Aligned_cols=396 Identities=12% Similarity=0.058 Sum_probs=224.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 152 ~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
++-++.+|.+..+|..+..-+-.+ -+++....|++.+...|.. +.+|.......+..++|+.-...|.++|..-- +.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s-~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nl 86 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSS-PRAWKLYIERELASKDFESVEKLFSRCLVKVL-NL 86 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hH
Confidence 567788999999999999877666 9999999999999999999 67788889999999999999999999986432 34
Q ss_pred HHHHH-HHHHHHhhchH----HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cC------CHHHHHHHHHHHHhh
Q 001392 232 EALVA-LAVMDLQANEA----AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF---TG------QHFLVEQLTETALAV 297 (1088)
Q Consensus 232 ~a~~~-la~~~~~~~~~----~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g------~~~~A~~~~~~~l~~ 297 (1088)
+.|.. |..+-...+.. ....+|......-+..++.+...|...+..+-. .| +.+.....|.+++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 44433 22232223321 112233333333333556666666655544321 12 233345555555532
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh------
Q 001392 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------ 371 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------ 371 (1088)
+ . .++-.++..-..|++.+... ...-.+--....|..|...++....+
T Consensus 167 P----m-----~nlEkLW~DY~~fE~~IN~~-----------------tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r 220 (656)
T KOG1914|consen 167 P----M-----HNLEKLWKDYEAFEQEINII-----------------TARKFIGERSPEYMNARRVYQELQNLTRGLNR 220 (656)
T ss_pred c----c-----ccHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcc
Confidence 1 1 00111111111112211111 00011111223344455544444332
Q ss_pred -CCC----c-------HHHHHHHHHHHHhcC------C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC------
Q 001392 372 -YPD----N-------CETLKALGHIYVQLG------Q--IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD------ 424 (1088)
Q Consensus 372 -~p~----~-------~~~~~~la~~~~~~g------~--~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~------ 424 (1088)
.|. . ...|.++...-...+ . .....-.|++++..-+-.+..|+..+..+ ..++
T Consensus 221 ~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~ 300 (656)
T KOG1914|consen 221 NAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKG 300 (656)
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhc
Confidence 111 0 123333333221111 1 12233456666666677777777666554 4444
Q ss_pred --------HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001392 425 --------TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK---GEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1088)
Q Consensus 425 --------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 493 (1088)
..++..+|++++...... ...+++.++..--.. ..++....++.+++..
T Consensus 301 d~~~a~~~t~e~~~~yEr~I~~l~~~----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~---------------- 360 (656)
T KOG1914|consen 301 DVPDAKSLTDEAASIYERAIEGLLKE----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI---------------- 360 (656)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh----------------
Confidence 455566666665543321 112222222211111 1233444444444442
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHc
Q 001392 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI-AKAR 572 (1088)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~ 572 (1088)
...+-.-++..+...-.+..-...|..+|.++-+..-..-.++..-|.+ |...
T Consensus 361 --------------------------~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 361 --------------------------EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred --------------------------hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 1111223455555555555667888999998876443333455554544 5567
Q ss_pred CChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 573 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 573 g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
++..-|...|+-.++..++.+..-..+...+...|+-..|..+|++++..
T Consensus 415 kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999886
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.83 E-value=1.7e-06 Score=89.48 Aligned_cols=245 Identities=24% Similarity=0.253 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--CchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH--EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CE 377 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~ 377 (1088)
+++.++++.+...-++.+++.+-...+..-+..+ .-..+...++..+..++.++++++.|+.+++...++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 5677777777777777777777666554211111 122345567777778888888888888887763322 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-
Q 001392 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDP----RD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE- 445 (1088)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~k~l~~~p----~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~- 445 (1088)
++..||.++.+..++++|.-+..++..+.. ++ .-+++.++..+ ..|....|.++.+.+.++.-..++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 777788888888888888888888776532 22 34556677777 7888888888888888876655433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch
Q 001392 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1088)
.....+..+|.+|...|+.+.|..-|+.+..... +. + ..-..+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~------~~---------------------------g----drmgqv 286 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA------SL---------------------------G----DRMGQV 286 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh------hh---------------------------h----hhHHHH
Confidence 2256677789999999999999999988876310 00 0 111234
Q ss_pred HHHHhHHHHHHhcCCHHH-----HHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 526 TVLFNLARLLEQIHDTVA-----ASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~-----A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 587 (1088)
.++...|.++....-..+ |+++-++++++... ....+.+++.+|..+|.-++-...+..+-+
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 455555555554433333 77777777664332 245778899999988887776666655433
No 144
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.5e-07 Score=90.34 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=133.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+|+.|.+.|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 45678889999999999999999999999999999999999999999999999999999999999999 78899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM-QRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~-~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+--|++.-|..-|.+-.+-+|+++---..|-....... ..+|...+ +++...+ .....|+..... .|+..
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d----P~~A~tnL~qR~~~~d-~e~WG~~iV~~y---LgkiS- 214 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD----PKQAKTNLKQRAEKSD-KEQWGWNIVEFY---LGKIS- 214 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC----HHHHHHHHHHHHHhcc-HhhhhHHHHHHH---Hhhcc-
Confidence 99999999999999999999998753322222222221 44554433 3443333 222222222111 12211
Q ss_pred HHHHHHHHHhhcCCCC----CchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 287 VEQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
...+++++......+. ...++++.+|..+...|+.++|...|+-++.
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1223333332221111 1235566666666666666666666666553
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-07 Score=97.70 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~ 186 (1088)
.+.-+.-++.-+..+|+++.-|..+|.+|+..|++..|...|.+++++.|+|+..+.++|.+++... .-.++..+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4455555666677777777777777777777777777777777777777777777777777666553 3456677777
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
+++..+|.+ ..+++.+|..++..|+|.+|...|+.++...|.+.
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 777777777 55666677777777777777777777777666543
No 146
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=1e-07 Score=89.59 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=100.1
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
.+..+.+..-...+..|.-++..|++++|..+|.-..-.+|.|+..|+++|.++..+++|++|+..|..+..+.+++ +.
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~ 106 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YR 106 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CC
Confidence 34555666677889999999999999999999999999999999999999999999999999999999999999988 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
+.+..|.|+..+|+...|+..|..++. .|.+
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 789999999999999999999999998 4543
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=2.3e-07 Score=92.65 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
+....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.+ ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4566778999999999999999999999999877653 4689999999999999999999999999999988 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
.+|.++...|+...+...+..++.. +.+|+.++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666665432 677888888888888876
No 148
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=0.00036 Score=75.61 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=139.1
Q ss_pred hcCCHHHHHHHHHHHHHHc------CCcHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHHC---CC-------C
Q 001392 537 QIHDTVAASVLYRLILFKY------QDYVD--------AYLRLAAIAKARNNLQLSIELVNEALKVN---GK-------Y 592 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~------p~~~~--------~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~-------~ 592 (1088)
-.|-+++|.++-.+++... |.... .+-.++.+-.-.|++.+|+.-+..+.... |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4567788888777777532 11112 22334445556799999998887776653 43 2
Q ss_pred hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH--HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~--~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
+.+...+|......|.++.|...|..+.+.....|..+++ .++.. |+.. ++- ..+|+-.-.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~---ed~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDA---EDLYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccH---HHHHHHHHhc
Confidence 3466777887788889999999999999987776665443 44555 7665 332 2333333334
Q ss_pred CCCCH----------HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCchhHHHHHHHHHHHccCHHHHHHHHHH
Q 001392 671 HTSNL----------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739 (1088)
Q Consensus 671 ~p~~~----------~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~ 739 (1088)
.|.|. .+++..|.....++++.+|...+.+.++..... .+.-....+..||+++.-.|+..++.++..-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 45421 234555777778999999999999998865211 1112345677889999999999999999998
Q ss_pred HHHHhcCCCCHHHHH----HHHHHHHhhcc
Q 001392 740 CLRKFYYNTDAQILL----YLARTHYEAEQ 765 (1088)
Q Consensus 740 al~~~~~~~~~~~l~----~La~~~~~~g~ 765 (1088)
++......+|..+.. .+-..|...|.
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 888766677732222 23444555555
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=2.5e-07 Score=86.18 Aligned_cols=109 Identities=28% Similarity=0.364 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1088)
.+++.+|..+...|++++|+..|..++...+..+....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5677788888888888888888888877544444445677788888888888888888888888877764 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~ 414 (1088)
|.++...|++++|+.++.+++...|++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88888888888888888888888888765543
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=4.2e-06 Score=100.61 Aligned_cols=229 Identities=16% Similarity=0.208 Sum_probs=183.1
Q ss_pred EeCCCCCCChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 001392 17 VALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYL 96 (1088)
Q Consensus 17 i~~~~lp~~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~ 96 (1088)
+|++.-|++++|+..++...|...-.|+.........+.++.|.++.++|+.. ++ | ....+++-+|..+-.+-...
T Consensus 1435 ~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN--~-REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1435 RDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-IN--F-REEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred cccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CC--c-chhHHHHHHHHHHHhHHHhh
Confidence 56677899999999999999999999999999999999999999999999865 21 1 11224454555444444444
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 97 g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
|..+ .-...|++|-+.. +-..++..+..+|...+++++|.++|+.+++...+....|..+|..+++..
T Consensus 1511 G~ee-----------sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1511 GTEE-----------SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred CcHH-----------HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 4322 3456666666543 234567888899999999999999999999988888899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHH
Q 001392 177 RYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~ 255 (1088)
+-+.|..++.+++..-|.. -..+.-..+.+-++.|+.+.++.+|+-.+..+|.-.+.|..+...-...++ ......
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~ 1655 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHH
Confidence 9999999999999998883 134445577888889999999999999999999999999888888888887 778888
Q ss_pred HHHHHHHhC
Q 001392 256 KMQRAFEIY 264 (1088)
Q Consensus 256 ~~~~al~~~ 264 (1088)
+|++++.+.
T Consensus 1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred HHHHHHhcC
Confidence 888887764
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.72 E-value=4.8e-08 Score=80.69 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1088)
++.+|..+|.+++..|+|++|+..|.+++..+|+++.+++.+|.++...| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666665
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.71 E-value=1.4e-07 Score=83.55 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
+++.+|..++..|++++|+..|..++...|.+..++..+|.++...|++++|+..|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467778888888888888888888888888777788888888888888888888888888887777 4667778888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001392 210 LGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1088)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888777666
No 153
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=6.5e-06 Score=99.10 Aligned_cols=220 Identities=16% Similarity=0.196 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCH----HHHHHHHHHHHhhchHHhHHH
Q 001392 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENV----EALVALAVMDLQANEAAGIRK 252 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~----~a~~~la~~~~~~~~~~~~~~ 252 (1088)
-.+...-|.+.+..+|++ ...|+.+...+..+++.++|+..+++||.. ++.-. ..|..+-++....|. -+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHH
Confidence 344567788889999998 777888888889999999999999999974 44432 334444444444444 556
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
..+.|++|.+... ...++..|..+|...+.+..|.++++.++.... ....+|..+|..+.++.+-+.|..++.+|+
T Consensus 1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6778888877653 345788899999999999999999999998764 455899999999999999999999999999
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~ 406 (1088)
+.+|. ..+.......|++-++.|+.+.+..+|+..+..+|.-.++|..+...-.+.|+...+..+|++++.+.
T Consensus 1592 ~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 87654 45677778889999999999999999999999999999999999999999999999999999998765
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.8e-07 Score=92.27 Aligned_cols=120 Identities=22% Similarity=0.159 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHH
Q 001392 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~ 257 (1088)
.+.-+.-++.-+..+|++ ..-|..+|.+|..+|++..|...|.+++++.|+|++.+..+|.++....+.....++...|
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344445555666667776 5556667777777777777777777777777777777777776666655544556677777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001392 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1088)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 298 (1088)
.+++..+|.++.+++.||..++..|+|.+|...++.++...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777666543
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=9.1e-07 Score=96.91 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=115.7
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001392 132 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 196 (1088)
Q Consensus 132 ~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~ 196 (1088)
+.+|...+..+. ...|+.+|.+++ ..+|....++..+|.|++.. ....+|+.+..+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 667777776664 678899999999 88999999999999988765 23567888889999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
+.++..+|.+++..++++.|...|++++.++|+...+++..|.+....|+ .++|+..++++++++|....+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhHH
Confidence 77888899999999999999999999999999999999999999999988 999999999999999876543
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=1.2e-06 Score=96.11 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
....|+.+|.+++ .++|..+.++..++.+++.. ....+|....++++..+|.|+.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999999988765 23578899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-H-HHHhhchHHhHHHHH
Q 001392 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA-V-MDLQANEAAGIRKGM 254 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la-~-~~~~~~~~~~~~~Al 254 (1088)
+++.|+..|++++.++|+. +.+++..|......|+.+.|...++++++++|.-..+-...- . +|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 888999999999999999999999999999998665543322 2 444443 67777
Q ss_pred HHHHHHHH
Q 001392 255 EKMQRAFE 262 (1088)
Q Consensus 255 ~~~~~al~ 262 (1088)
..|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765433
No 157
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=5.8e-05 Score=81.48 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 001392 109 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 172 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~--~---~p----------~~~~a~~~la~~~ 172 (1088)
.|+.-+.++...-.++..+..+++..+.+ |+..|...- ...++.... . .| .+...++..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 35566677766666666555555555544 455554322 222222211 1 11 2356788899999
Q ss_pred HHcCChHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC--CCH---------
Q 001392 173 FNRGRYSDSLEFYKRALQVH----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------DP--ENV--------- 231 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~----p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p--~~~--------- 231 (1088)
+....|..|+.........- ......+.+..-..+....+.++|+.++.-.-++ .| ++.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 99999999998877665432 1122333444455555666667776554322211 00 000
Q ss_pred ----------------HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 232 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 232 ----------------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
.+.......++...+ ..-+..-...+..+..+.+.++...+..++..|++.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122233333 5555555566666667888999999999999999999999876543
Q ss_pred h-hcCC---CCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------C---------CCCCchhhHhhHHHHHHH
Q 001392 296 A-VTNH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI------N---------KPHEFIFPYYGLGQVQLK 354 (1088)
Q Consensus 296 ~-~~~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~---------~~~~~~~~~~~la~~~~~ 354 (1088)
- .... .|. ....|.++|-++++.|.|.-+..+|.++++.. + .........++.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 1 1111 111 23456899999999999999999999998511 1 112344578999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001392 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1088)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1088)
.|++-.|.++|.++...+-.+|..|..++.|+...
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998743
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=5.6e-07 Score=94.85 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=91.5
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHH
Q 001392 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1088)
Q Consensus 128 ~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1088)
...++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|++++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 36677778776 56789999999999999999987 5789999999999999999999999999888875 366788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
.+|.++..+|+++.|+..|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 889999999999999999999999999877543
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.68 E-value=4.3e-08 Score=84.53 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~ 218 (1088)
+|+|+.|+..|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|+..+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 5566655 4555566777777777777777
Q ss_pred HHHHH
Q 001392 219 AFQRA 223 (1088)
Q Consensus 219 ~~~~a 223 (1088)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77654
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.68 E-value=5.8e-07 Score=89.44 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444454444444443 4566777777777788888888888877765542 3467777777777777777777777
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLG 211 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g 211 (1088)
+++...|.. ...+..+|.++..+|
T Consensus 97 ~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 97 QALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 777777776 455666677766443
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=1e-06 Score=85.00 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001392 112 LATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.+...+..++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.+++..|+|++|+..+
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555566666666665 4455666666677777777777777766665443 345666666777777777777666
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+.+ . .+...+.++..+|.++...|++++|+..|+++
T Consensus 109 ~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 109 QQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred Hhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 542 1 11222445566667777777777777666665
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=3.7e-07 Score=96.23 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=96.4
Q ss_pred CHHHHhhHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HH
Q 001392 674 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 751 (1088)
Q Consensus 674 ~~~a~~~la~~l-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~ 751 (1088)
+...++..|..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++.+|+..|+.+++.||.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345566666655 5679999999999999999996542 3689999999999999999999999999999887665 88
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
+++.+|.++...|+++.|+.+|+++++.+|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998764
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.66 E-value=9.4e-08 Score=78.95 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 228 (1088)
++.+|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777777777777777777777 666777777777777 57777777777777776
No 164
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.64 E-value=7.3e-06 Score=82.84 Aligned_cols=190 Identities=19% Similarity=0.192 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1088)
.+..|+..|...+..|+|.+|+..|+.+....|.+ ..+.+.++.++++.++|+.|+..+++.+.+.|+++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988866 46889999999999999999999999999999873 34455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
..|.+++..= + ....+......|+..|+..+...|++.-+-.....+
T Consensus 113 lkgLs~~~~i---------------~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---- 159 (254)
T COG4105 113 LKGLSYFFQI---------------D--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---- 159 (254)
T ss_pred HHHHHHhccC---------------C--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----
Confidence 5555532210 0 001122335667777777777777765332211111
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
..+...+ +.--..+|+.|...|.+-.|+..++.+++..+..+....++..+..+|...|-.++|
T Consensus 160 -------~~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 160 -------VKLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred -------HHHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 1111111 122334555666666666666666666655444444455555555666666655555
Q ss_pred HHHH
Q 001392 362 LTNF 365 (1088)
Q Consensus 362 ~~~~ 365 (1088)
...-
T Consensus 224 ~~~~ 227 (254)
T COG4105 224 KKTA 227 (254)
T ss_pred HHHH
Confidence 5443
No 165
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=9.9e-06 Score=81.14 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=70.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhh
Q 001392 566 AAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 645 (1088)
Q Consensus 566 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~ 645 (1088)
+.++...|++++|...... ..+.++...-..++.++.+.+-|...++++.+...+ .++..|+.. |...+..
T Consensus 115 a~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided---~tLtQLA~a-wv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED---ATLTQLAQA-WVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---HHHHHHHHH-HHHHhcc
Confidence 3445555555555554443 123334444444555555555555555555544321 233334444 4443222
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001392 646 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1088)
Q Consensus 646 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (1088)
. +.+..|.-+|+.+-...|..+...++.+.+...+|++++|..+++.++...+ .+|+++.|+..+-.
T Consensus 186 g--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 186 G--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLAL 252 (299)
T ss_pred c--------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHH
Confidence 1 3344455555555444444444555555555555555555555555554443 34445555544444
Q ss_pred HccCHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQ 738 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~ 738 (1088)
..|...++..-+-
T Consensus 253 ~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 253 HLGKDAEVTERNL 265 (299)
T ss_pred HhCCChHHHHHHH
Confidence 4444444444333
No 166
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.64 E-value=1.1e-06 Score=84.83 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=96.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHcCCH
Q 001392 139 LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~ 213 (1088)
+..|++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. .+.+++.++.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36788888988999999999988 5678889999999999999999999999987654 345678899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
++|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999998663 3333455667778888888888 888888887763
No 167
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.3e-05 Score=80.32 Aligned_cols=234 Identities=11% Similarity=0.069 Sum_probs=163.3
Q ss_pred cchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HC-CCChhHHHhhh
Q 001392 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK-VN-GKYPNALSMLG 600 (1088)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~-~~-p~~~~~~~~l~ 600 (1088)
......+.+.+.|..+|.+..-+.-.... ......+...++.+...-++.+.-+.-+.+.+. .. ..+...+..-+
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 56778888899999999876554332211 112234444555555445555554444443332 22 23334556667
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.+++..|++++|.........+ +..++ -..+ +..+ .+++-|....+++.+.+-+ ..+..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~l----E~~Al--~VqI-~lk~------------~r~d~A~~~lk~mq~ided--~tLtQ 174 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENL----EAAAL--NVQI-LLKM------------HRFDLAEKELKKMQQIDED--ATLTQ 174 (299)
T ss_pred HHhhcCCChHHHHHHHhccchH----HHHHH--HHHH-HHHH------------HHHHHHHHHHHHHHccchH--HHHHH
Confidence 7899999999999998863222 33332 2233 5555 8899999999999988754 34444
Q ss_pred HHHHHHh----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 681 AGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 681 la~~l~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
||..+.. .+.+..|.-+|+.+.+..| ..+.....++.|.+.+|+|++|..+++.+|.+ .+.++.++.++
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~-----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl 247 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTP-----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccC-----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 5554443 3479999999999999775 57888999999999999999999999999998 67889999999
Q ss_pred HHHHHhhccHHHHH-HHHHHHHHhCCCChhHH
Q 001392 757 ARTHYEAEQWQDCK-KSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 757 a~~~~~~g~~~~A~-~~l~~al~~~p~~~~~~ 787 (1088)
..+-...|+..++. +.+.+....+|..+.+.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 99999999887765 45677777788776543
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.62 E-value=2e-06 Score=100.05 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=115.6
Q ss_pred CCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHH
Q 001392 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--------YSDSLEFYKRALQ 190 (1088)
Q Consensus 124 ~p~~~~~--~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--------~~~Al~~~~~al~ 190 (1088)
-|.++.+ ++.+|..++..+. +..|+.+|++++..+|++..++..++.++..... ...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3555544 4667888877665 8899999999999999999999998887766432 3455556666555
Q ss_pred h--CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 191 ~--~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
. .|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ .++|+..|.+++.++|..+
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788888888899999999999999999999 57899999999999999 9999999999999999988
Q ss_pred H
Q 001392 269 M 269 (1088)
Q Consensus 269 ~ 269 (1088)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=4.7e-07 Score=92.33 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=99.7
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~L 756 (1088)
.+..|.-+...|+|..|...|...+..+|++.+ .+.++|.||.+++.+|+|..|...|..+++.+|.++. |..++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 677788888999999999999999999998764 5789999999999999999999999999999988777 8999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCChhHH
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
|.+....|+.++|..+|+++++.+|+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999887643
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=6.4e-07 Score=95.54 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hhh-----hHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~-~~~-----~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~ 115 (1088)
..-..|..||+.|+|..|...+++++..-.... ++. ....++.++..|+.+|+++..+. .|+.
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai~ 278 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAIE 278 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHHH
Confidence 455678899999999999999999754211000 000 11123334444444444443322 4555
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHh
Q 001392 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQV 191 (1088)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-l~~~~~al~~ 191 (1088)
.+++++..+|+|+.++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+.+. .++|.+++..
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555555555555555555555555555555555555555554444444444443333322 4444444443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.60 E-value=1.3e-07 Score=77.05 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.+|..++..|++++|+.+|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777777777777777777777777777777777765
No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.60 E-value=1.4e-05 Score=80.73 Aligned_cols=200 Identities=16% Similarity=0.198 Sum_probs=141.9
Q ss_pred cchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhH---H
Q 001392 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---L 596 (1088)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~ 596 (1088)
..+..+++-|......|++.+|+..|+.+...+|.. ..+.+.++.++.+.++++.|+..+++.+.+.|.++.+ +
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356778888888888888888888888888887764 5577777888888888888888888888888877763 3
Q ss_pred HhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 001392 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1088)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 676 (1088)
+..|.+ ++.......++ ......|+.-|+.++...|++.+
T Consensus 112 YlkgLs------------------------------------~~~~i~~~~rD----q~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLS------------------------------------YFFQIDDVTRD----QSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHH------------------------------------HhccCCccccC----HHHHHHHHHHHHHHHHHCCCCcc
Confidence 333333 11111111111 14566788889999999999877
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHH
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 755 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~ 755 (1088)
+-.....+ ..+... -..--..+|..|.+.|.+..|+.-++.+++.++..+. ...+..
T Consensus 152 a~dA~~~i--------------~~~~d~--------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKARI--------------VKLNDA--------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHHHH--------------HHHHHH--------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 65533222 222221 1223346789999999999999999999999877666 678999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 756 La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
+..+|+..|-.++|.++-.-+-.-.|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999887665555556555
No 173
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=0.0028 Score=71.80 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=93.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1088)
.+..+...|+++.|+..|-.+. ....-..+......+.+|+.++..... .......|-.++..|.
T Consensus 712 wg~hl~~~~q~daainhfiea~-----------~~~kaieaai~akew~kai~ildniqd----qk~~s~yy~~iadhya 776 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN-----------CLIKAIEAAIGAKEWKKAISILDNIQD----QKTASGYYGEIADHYA 776 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh-----------hHHHHHHHHhhhhhhhhhHhHHHHhhh----hccccccchHHHHHhc
Confidence 3555666666666666554432 112222333445566666666655432 1111222444666677
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH-hcCCHHH----
Q 001392 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-AQAFIDLGELL-ISSDTGA---- 427 (1088)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~-~~~~~~la~l~-~~~~~~~---- 427 (1088)
..|+|+.|.++|.++-. ...-..+|-+.|++..|..+-.+.. .|.. ...|+..+.-+ ..|++.+
T Consensus 777 n~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred cchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 77777777776655421 1223345666677777666655543 2222 22333333333 4444433
Q ss_pred ---------HHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 428 ---------ALDAFKT------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 428 ---------A~~~~~~------a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
|+..|.+ ++++..+............+|.-+-..|+...|...|-++-.
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 3333332 233333332223346667778888888999999988877654
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.60 E-value=5.7e-08 Score=83.77 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
+++|+.|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ ...+|.++...+.+|.+++..|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35788999999999999995 466788899999999999999999999 788888889999999999999999999999
Q ss_pred HHHH
Q 001392 185 YKRA 188 (1088)
Q Consensus 185 ~~~a 188 (1088)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.60 E-value=9.6e-07 Score=88.17 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=79.9
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001392 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1088)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1088)
+.....++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+.++.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44556778888888888888888888888876433333345678888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCH--------------HHHHHHHHHHHHhCCCC
Q 001392 382 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 382 la~~~~~~g~~--------------~~A~~~~~k~l~~~p~~ 409 (1088)
+|.++...|+. .+|+.++.+++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888887763 44555555555555554
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.59 E-value=1.2e-06 Score=95.02 Aligned_cols=203 Identities=17% Similarity=0.188 Sum_probs=132.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDP------RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIG 455 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p------~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~ 455 (1088)
|.+|...+++++|...|.++....- .....+...+.++...++..|+.+|++++.++...+.... ..++..+|
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA 121 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA 121 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455555555555555543210 1134455566677555888999999999988877654333 57888999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHH
Q 001392 456 VIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1088)
Q Consensus 456 ~~~~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (1088)
.+|... |+++.|+.+|++++....... .......++..+|.+
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-------------------------------------~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-------------------------------------SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------------------------ChhhHHHHHHHHHHH
Confidence 999998 999999999999988421000 011234677889999
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-----HHHhhhhh
Q 001392 535 LEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-----ALSMLGDL 602 (1088)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-----~~~~l~~~ 602 (1088)
+...|++++|+.+|+++....-+ ....++..+.+++..|++..|...+++....+|.... +...+..+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999874322 1245667788899999999999999999999886544 33333333
Q ss_pred hhcc--cchHHHHHHHHHhhhc
Q 001392 603 ELKN--DDWVKAKETFRAASDA 622 (1088)
Q Consensus 603 ~~~~--g~~~~A~~~~~~al~~ 622 (1088)
+-.. ..+..|+..|..+..+
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS--
T ss_pred HHhCCHHHHHHHHHHHcccCcc
Confidence 3221 2367777777655444
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.2e-07 Score=95.20 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCC------------CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKP------------HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 378 (1088)
.|..|++.|+|..|...|.+++..+... .....++++++.++.+++.|..|+..+.++|..+|+|+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3445555555555555555544432210 1123468899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHH
Q 001392 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS-DTGAALDAFKTARTLLK 440 (1088)
Q Consensus 379 ~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~-~~~~A~~~~~~a~~~~~ 440 (1088)
++..|.++..+|+++.|+..|++++++.|.|-.+...|..+- ... ......+.|..+.....
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999988887 333 33444666666665443
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.57 E-value=7.3e-07 Score=78.83 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|++++|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46778888888888888888888888888877 56778888888888888888888888888888888888888888888
Q ss_pred hchHHhHHHHHHHHHHHHHhCC
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p 265 (1088)
.|+ +..|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 877 8888888888877665
No 179
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.0045 Score=72.93 Aligned_cols=537 Identities=11% Similarity=0.045 Sum_probs=262.0
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhH---HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHH
Q 001392 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVR---YERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1088)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A 113 (1088)
+.++.+-.++|.-|..+=-.+.-+++|+.--.-+.-.||-++. .+.+.+++....+-.+.|.+ .+.
T Consensus 675 rqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qi-----------kEv 743 (1666)
T KOG0985|consen 675 RQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQI-----------KEV 743 (1666)
T ss_pred HhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccH-----------HHH
Confidence 4678888899999999888888888888754443333332210 12233333333333344433 233
Q ss_pred HHHHHHHhhcCCCChh---------------------hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------
Q 001392 114 TQYYNKASRIDMHEPS---------------------TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL------- 165 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~---------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------- 165 (1088)
..+++..--.+|.... -++.--..|+..++..+=++.|-+ +.+|...+..
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhhhhcC
Confidence 3333322222221111 111223345555666555555543 3355432211
Q ss_pred -----HHHHHHH---------------HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHH----------
Q 001392 166 -----LGQACVE---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK---------- 215 (1088)
Q Consensus 166 -----~~la~~~---------------~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~---------- 215 (1088)
+....+. -++++..--+.+++..+.....+ +.++..+|.+|...++-.+
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d-~a~hnAlaKIyIDSNNnPE~fLkeN~yYD 900 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQD-PATHNALAKIYIDSNNNPERFLKENPYYD 900 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcc-hHHHhhhhheeecCCCChHHhcccCCcch
Confidence 1111122 22334444555666666666666 6667777777665543221
Q ss_pred HHHHHHHHHhhCCCC--------------------HHHHHHHHHHHHhhchHHhHHHHH--------HHHHHHHHh---C
Q 001392 216 ARQAFQRALQLDPEN--------------------VEALVALAVMDLQANEAAGIRKGM--------EKMQRAFEI---Y 264 (1088)
Q Consensus 216 A~~~~~~al~~~p~~--------------------~~a~~~la~~~~~~~~~~~~~~Al--------~~~~~al~~---~ 264 (1088)
....=.-+-+.+|.- ...+..++.......+..-+.+.+ +.+.+.+.. .
T Consensus 901 s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 901 SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCc
Confidence 111111111223321 112334455555554443344433 222333322 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1088)
..+|.....-...++..+-..+-+.++++.+-..............+... .-.-+......+..+.-.. +.|
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdny--Da~----- 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNY--DAP----- 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccC--Cch-----
Confidence 23555555666777777888888888888774322222221111111111 1112233333333332210 000
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEI----------------------YPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~ 402 (1088)
.+|.+....+-|++|...|.+.--. .-+.+.+|..+|.+..+.|...+|+..|-++
T Consensus 1053 --~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1053 --DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred --hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 1233444444444444444332000 0033455666666666666666666555443
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001392 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1088)
Q Consensus 403 l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~ 481 (1088)
+++..|.....+. ..|.|++-+.++..+.+.... +.+-..+..+|.+.++..+-...+
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E------~~id~eLi~AyAkt~rl~elE~fi---------- 1189 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE------PYIDSELIFAYAKTNRLTELEEFI---------- 1189 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC------ccchHHHHHHHHHhchHHHHHHHh----------
Confidence 4455555555555 556666655555555443322 111222333344444433322211
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH
Q 001392 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (1088)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (1088)
..| +..-.-..|.-+...|.|+.|.-+|.. +.-
T Consensus 1190 --------------------------------------~gp-N~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN 1222 (1666)
T KOG0985|consen 1190 --------------------------------------AGP-NVANIQQVGDRCFEEKMYEAAKLLYSN--------VSN 1222 (1666)
T ss_pred --------------------------------------cCC-CchhHHHHhHHHhhhhhhHHHHHHHHH--------hhh
Confidence 122 223334566666677888888777754 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHH
Q 001392 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 641 (1088)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~ 641 (1088)
|..|+..+..+|+|..|.+..+++ ++..+|-..+......+.+.-|.-+=-.++-.. .-+-.+.+. |..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivha-----deLeeli~~-Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHA-----DELEELIEY-YQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEeh-----HhHHHHHHH-HHh
Confidence 778888888888888888877764 345566666666665555544433211111111 111223333 444
Q ss_pred HhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc
Q 001392 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1088)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~ 688 (1088)
. |.+++-+.+++.++.+...+.-.+..||++|.+-
T Consensus 1292 r------------GyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1292 R------------GYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred c------------CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 4 7788888888877777766666777777777654
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.56 E-value=1.4e-06 Score=101.27 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1088)
.+.+..|+.+|+++++++|+++.++..++.++.... ++..+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 456779999999999999999999999888876642 245566666666664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001392 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1088)
++++|...|++++.++|+ ...+..+|.++...|++++|+..|.+++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999994 5689999999999999999999999999999998753
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=0.0002 Score=75.60 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 109 HFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
.+..+...+..+....+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444443 244444455555555555555555555544 3444445555555555555555555555
Q ss_pred HHHHHHhCCCChhHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Q 001392 185 YKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+..++...+.. .......+. ++...|+++.|...|.+++..+|
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55555544443 222222333 44555555555555555544333
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.54 E-value=0.00029 Score=74.34 Aligned_cols=226 Identities=30% Similarity=0.403 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 142 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
+.+..+...+..++...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+.+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 45555555555555555442 45555555555555555555555555554 23333 444555555555555555555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001392 218 QAFQRALQLDPENVEALVALAV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~-~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1088)
..+..++...+.+.......+. ++...++ +..|+..+.+++...|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~------------------------------ 162 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGD---YEEALELYEKALELDPE------------------------------ 162 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC------------------------------
Confidence 5555555554444333333333 3444444 44444444444433331
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001392 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1088)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1088)
.......+...+..+...+++..|+..+..++. ..+. ....+..++..+...+.+..|+..+..++...|..
T Consensus 163 ----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 163 ----LNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred ----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 012233444444446666777777777777765 2333 45566677777777777777777777777777765
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
...+..++..+...+.+..+...+.+++...|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666666666666666677777777777777766
No 183
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.54 E-value=3.9e-08 Score=100.41 Aligned_cols=244 Identities=13% Similarity=0.046 Sum_probs=164.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
+-..|..|+.+|+|++|+.||.+.+..+|.|+..+..+|.+|++.+.|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999988777 66788889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
|...+|..-++.+|.+.|++.+....++.+..-.. + .-+.+.-|....+.. -
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E-------~----~I~~KsT~G~~~A~Q-----------------~ 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRE-------R----KIATKSTPGFTPARQ-----------------G 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHh-------h----hHHhhcCCCCCcccc-----------------c
Confidence 99999999999999999987765554443322110 0 000111111111100 0
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
..+.+ ..-.-|..+...|.++.++..|...+... ..+.....+ +..|.+.-+++.++.-+-+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000 01123555666777777777776655421 222222222 5667777788888888877777
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
..|.........+.+---.|...++...++.++.+.|.+-.....+..
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr 343 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETR 343 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhh
Confidence 766655444444555555567778888888888888877555544443
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.52 E-value=3e-07 Score=74.82 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=47.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46777777788888888888888777776 66777778888888888888877887777777664
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.49 E-value=3.2e-06 Score=84.13 Aligned_cols=109 Identities=19% Similarity=0.120 Sum_probs=84.0
Q ss_pred HHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC--
Q 001392 50 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE-- 127 (1088)
Q Consensus 50 y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~-- 127 (1088)
||-.+.+..+...|...+... .......++..+|.++...|..+ +|+..|.+++.+.|+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTT-------SGEKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccchhhhhHhccCC-------chhHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchh
Confidence 334444555666665554321 12245667788888888777665 9999999999887653
Q ss_pred -hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 128 -PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 128 -~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
+.++..+|.++...|++++|+..|.+++..+|.+..++..+|.++...|
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999988333
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.49 E-value=3.5e-06 Score=77.65 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=73.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1088)
.+..++..|...+..|+|.+|++.|+.+....|.. ..+.+.++.+++..++|..|+..+++.++++|.+ .+.+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678889999999999999999999999888765 5788999999999999999999999999999987 356678
Q ss_pred HHHHHHHHcCC
Q 001392 202 GIGLCRYKLGQ 212 (1088)
Q Consensus 202 ~lg~~~~~~g~ 212 (1088)
.+|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888877654
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.48 E-value=2.3e-06 Score=92.86 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
+++.|...|.++ |.+| ..+++.+|...|.++.....+.+.... ...+...+.++... ++.+|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 667777666664 6677 889999999999999988876544333 35566666666555 999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc-CCHHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (1088)
.+|++++....... ....-..++..+|.+|... |+++.|+.+
T Consensus 95 ~~~~~A~~~y~~~G-------------------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~ 137 (282)
T PF14938_consen 95 ECYEKAIEIYREAG-------------------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEY 137 (282)
T ss_dssp HHHHHHHHHHHHCT--------------------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHH
T ss_pred HHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999987421000 1122467888999999999 999999999
Q ss_pred HHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh-------hHHHhhhhhhhcccchHHHHH
Q 001392 548 YRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 548 ~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~ 614 (1088)
|++++..... ...++..++.++...|+|++|+..|+++....-+++ ..+...+.+++..|++..|..
T Consensus 138 Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 138 YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999985321 256888999999999999999999999887543221 244567778999999999999
Q ss_pred HHHHhhhcCCC
Q 001392 615 TFRAASDATDG 625 (1088)
Q Consensus 615 ~~~~al~~~~~ 625 (1088)
.|++.....|.
T Consensus 218 ~~~~~~~~~~~ 228 (282)
T PF14938_consen 218 ALERYCSQDPS 228 (282)
T ss_dssp HHHHHGTTSTT
T ss_pred HHHHHHhhCCC
Confidence 99999887664
No 188
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.47 E-value=0.011 Score=71.92 Aligned_cols=472 Identities=15% Similarity=0.099 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCCCC---chHHHHHHHHHHHhcCCH
Q 001392 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~la~~~~~~g~~ 321 (1088)
+..|+.+++-+++..+- ...+.+.+|.+++ ...+++.|+..+++++.....+.. ...+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44556666655532221 2244555666655 566777777777777655433111 133455667777777776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhh-Hhh-H-HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHhcCCH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFP-YYG-L-GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~-~~~-l-a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1088)
. |...+.+.+......+..... .+. + ...+...+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 888888877754332222211 111 1 223333368888888888877654 23332 223334555566667
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------------
Q 001392 393 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 446 (1088)
Q Consensus 393 ~~A~~~~~k~l~~~----------p~~~~~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 446 (1088)
+.+++.+.++.... +....+|..+-.+. ..|++..+...++..-..+.......
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777777664321 12244444444433 66676666655555444433321110
Q ss_pred ------------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001392 447 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1088)
Q Consensus 447 ------------~------------~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1088)
+ .-++..-|......|..+.|.+++.+++..-....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~-------------------- 335 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK-------------------- 335 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--------------------
Confidence 0 11222234455555666677777777776311000
Q ss_pred hhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
.......+...... ..-..++..+ ...+....+.+.+-.+++..|...+
T Consensus 336 ------------~~~~~~~~~sl~~~-------------~~~~~~~~~l------~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 336 ------------IKSPSAPSESLSEA-------------SERIQWLRYL------QCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred ------------ccCCCCCCcCHHHH-------------HHhHHHHHHH------HHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 00000000000000 0000111110 0234455566667778887777777
Q ss_pred HHHHHHC---CC------ChhHHHhhhhhhhcccchHHHHHHHH--------HhhhcCCCCChHHHHHhhhHHHHHHhhh
Q 001392 583 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 645 (1088)
Q Consensus 583 ~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~~~~d~~a~~~lg~~~y~~~~~~ 645 (1088)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+ +..|. +.-....
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il-a~LNl-~~I~~~~ 462 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL-AALNL-AIILQYE 462 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH-HHHHH-HHHhHhh
Confidence 7666543 22 35577888888888888999998887 44444444444433 22333 2222111
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHhcCCC-CHHHHh-hHHHHHH--hcCCchHHHHHHHHHHHHh-cCCCCCC-chhHHHH
Q 001392 646 EKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAAN-GAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MPDVWIN 719 (1088)
Q Consensus 646 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~-~la~~l~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~~~~~~ 719 (1088)
..+... ..+....++..+......|+ +...++ .+..++. ..-...++...+...++.. ....... ...++..
T Consensus 463 ~~~~~~--~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 463 SSRDDS--ESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred cccchh--hhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 100000 00122222222222222222 112222 2222222 2223446777777766655 2111111 2334556
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHH-----HHHHHHHhhccHHHHHHHHHHHHH
Q 001392 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 778 (1088)
Q Consensus 720 la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~-----~La~~~~~~g~~~~A~~~l~~al~ 778 (1088)
+++.++ .|+..+.......+.......++ ..+|. .+...+...|+.++|.....+.-.
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777 78888877777777765444433 23332 345557778999998887766543
No 189
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=4.5e-06 Score=92.58 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=79.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHH
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1088)
.+...++++.|+.+|++..+.+|. +...+|.++...++..+|+.++.+++..+|.+ ..++...+..+...++++.|
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHH
Confidence 334456677777777776666653 44456666666677777777777777777766 55566667777777777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
+.+.++++...|++...|+.|+.+|...|+ ++.|+..++.+-
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCc
Confidence 777777777777777777777777777777 777776666443
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.45 E-value=4.4e-06 Score=85.35 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
.+..|.-++..|+|..|...|...++..+..+..+.++||||.+++.+|+|+.|..+|..+++..+..|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45555556666777777777777777766677777788888888888888888888888888777777777777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1088)
+...+|+.++|..+|+++++.+|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888887777665544
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=98.44 E-value=2.4e-06 Score=80.53 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.++.....+..|.-++..|++++|..+|+-+...+|.+ +..++++|.|+..+++|++|+..|..+..++++++...+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 44456788999999999999999999999999999999 77789999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
|.+++..|+ ...|+..|..++. .|.+.
T Consensus 112 gqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 999999999 9999999998887 45544
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.39 E-value=0.0012 Score=69.86 Aligned_cols=263 Identities=18% Similarity=0.127 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+.+++.-++..+..|+++.|.+-|+-++..-..-...+.++-.-..+.|.++.|..+-..+-...|.. +......-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHH
Confidence 44455556666666777777777766653211111222222223344566666766666666666666 33444444455
Q ss_pred HHcCCHHHHHHHHHHHHhh---CCCCH---HHHHHHH--HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 208 YKLGQLGKARQAFQRALQL---DPENV---EALVALA--VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~---~p~~~---~a~~~la--~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
+..|+++.|++..+..... .++-. .+.+.-+ ...+. .+ ...|...-..++++.|+...+...-+..++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-ad---p~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-AD---PASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CC---hHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 5666777766666544332 12111 1111111 11111 11 445555555666666666555555555566
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHH
Q 001392 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1088)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1088)
..|+..++-.+++.+-+..+++ .++..|....--+.++.-++++.......+++..+.+..+...+.-|++.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 6666655555555555432211 12222222222233333333333222233444444444555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001392 360 SALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 404 (1088)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~k~l~ 404 (1088)
.|..--+.+....|. ..++..|+.+-... |+-.++...+-++++
T Consensus 347 ~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555444444444442 22333333333322 444454444444443
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.38 E-value=0.0014 Score=69.32 Aligned_cols=293 Identities=16% Similarity=0.104 Sum_probs=176.2
Q ss_pred HHHHcCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHh
Q 001392 171 VEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1088)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~-~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1088)
+....|+-..|.+.-.+.-.+ ..+..+-+++.-+..-.-.|+++.|..-|+-++. +|..- +..|--+|+.....+.
T Consensus 93 iAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr~Ga 169 (531)
T COG3898 93 IAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHhccc
Confidence 333444555555554444422 2222344444445555555555555555555542 22211 1222222322222222
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc---hHHHHHHHHHHH-hcCCHHHHH
Q 001392 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYH-SKGDYEKAG 325 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~la~~~~-~~g~~~~A~ 325 (1088)
.+.|..+-..+...-|.-+.++.......+..|+++.|+++.+......-..+.. ..+...-+.... ..-+...|.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 5556666666666666666665555556666666666666666554332222211 112222222221 223567777
Q ss_pred HHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 001392 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA-QELLRKAAK 404 (1088)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~k~l~ 404 (1088)
..-..+++ ..|+++.+-..-+..++..|+..++-.+++.+.+..|. +.++. ...+.+.|+.... ++-..++..
T Consensus 250 ~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 250 DDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCcHHHHHHHHHHHHh
Confidence 77777776 67888888889999999999999999999999998874 33322 2234455554322 233344556
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 001392 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDG 478 (1088)
Q Consensus 405 ~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~al~~~ 478 (1088)
+.|++....+..+..- ..|++..|...-+.+....|. ..++..++.+--.. |+-.++..++-+++...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 6899999999999877 899999998888877776554 46677778776655 99999999999999853
No 194
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.37 E-value=0.0096 Score=67.45 Aligned_cols=185 Identities=9% Similarity=-0.046 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHH
Q 001392 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (1088)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1088)
..|..........|+++...-.|++++--+ ......|
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~c-------------------------------------------A~Y~efW 334 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPC-------------------------------------------ALYDEFW 334 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHH-------------------------------------------hhhHHHH
Confidence 455556666677888888888888877522 2356778
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc
Q 001392 529 FNLARLLEQIHDTVAASVLYRLILFK-YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (1088)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g 607 (1088)
...++.....|+..-|...+..+.+. .|..+...+.-+.+....|++..|...++.....-|+...+-...+....+.|
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 88888888888888888777777664 46667777777777778888888888888888877888777777777777778
Q ss_pred chHHHHH---HHHHhhhcCCCCChHH--HHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHH
Q 001392 608 DWVKAKE---TFRAASDATDGKDSYA--TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (1088)
Q Consensus 608 ~~~~A~~---~~~~al~~~~~~d~~a--~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la 682 (1088)
+.+.+.. .+.............. ++......|... ++.+.|...+.+++...|.+-..+..+.
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 7777763 3332222111111111 111111112222 6777888888888888888777666665
Q ss_pred HHHHhc
Q 001392 683 VVLAEK 688 (1088)
Q Consensus 683 ~~l~~~ 688 (1088)
.+....
T Consensus 483 ~~~~~~ 488 (577)
T KOG1258|consen 483 RFELIQ 488 (577)
T ss_pred HHHHhC
Confidence 555443
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=9.5e-06 Score=74.85 Aligned_cols=110 Identities=12% Similarity=0.195 Sum_probs=97.1
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~ 752 (1088)
.+..++.-|......|+|.+|++.|+.+....|.+.+ ...+.+.+|.+|++.|++.+|+..+++.++.+|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4567788888899999999999999999999997754 4689999999999999999999999999999888777 778
Q ss_pred HHHHHHHHHhhcc---------------HHHHHHHHHHHHHhCCCChh
Q 001392 753 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 753 l~~La~~~~~~g~---------------~~~A~~~l~~al~~~p~~~~ 785 (1088)
++..|.+++.... ...|+..|++.+...|++.-
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 9999999998876 78899999999999998754
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.36 E-value=0.0077 Score=65.39 Aligned_cols=439 Identities=14% Similarity=0.033 Sum_probs=225.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001392 105 EKEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1088)
.|++++.+|..+|.+........+ .++-++..-.+-..+.+.-...+...-+..|..+...+-.|...++.+.|.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 456778899999999977654443 344455555666778888888888877888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C----CCHHHHHHHHHH
Q 001392 180 DSLEFYKRALQVHPSC--------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD-P----ENVEALVALAVM 240 (1088)
Q Consensus 180 ~Al~~~~~al~~~p~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p----~~~~a~~~la~~ 240 (1088)
+|+..+......-... +-..-...+.|+..+|.+.+++..+.+.+..- | -+.+.+..+..+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 9999987665541111 01112346889999999999999999887642 2 244444443332
Q ss_pred HHhhchHHhHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHhcC-CHH---HHHHHHHHHHhhcCCCCCchHHHHH
Q 001392 241 DLQANEAAGIRKGMEKMQRAFE-----IYPYCA-MALNYLANHFFFTG-QHF---LVEQLTETALAVTNHGPTKSHSYYN 310 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~-----~~p~~~-~~~~~la~~~~~~g-~~~---~A~~~~~~~l~~~~~~~~~~~~~~~ 310 (1088)
+.+. +|-.+.+ +.|+.- .+.+.+-.++.... -|. -...++.......-..|.
T Consensus 177 lsrS-----------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~------- 238 (549)
T PF07079_consen 177 LSRS-----------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK------- 238 (549)
T ss_pred HhHH-----------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH-------
Confidence 2221 1111111 112111 11111111111100 011 011222221110000000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDNCETLKALGHI 385 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~ 385 (1088)
...--+-+++..+++.. ..|....+.-.+-.-... +.+++...++.+... ...-...+..+-..
T Consensus 239 -----e~l~~~mq~l~~We~~y----v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 239 -----ERLPPLMQILENWENFY----VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred -----hhccHHHHHHHHHHhhc----cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00111122222222211 223333322222222222 444444444443322 11112333344444
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH------HHH--hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 001392 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG------ELL--ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIG 455 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la------~l~--~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~l~ 455 (1088)
..+.++...|..++.-...++|......-.+. .+. ...++..-..++.-...+ ...+.. .-+..+...+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~-qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEI-QSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHH-HhhcccHHHHHHHHHHHH
Confidence 56778888898888888788887652221111 111 111122222222111111 111100 1134455567
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHH
Q 001392 456 VIHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1088)
Q Consensus 456 ~~~~~~g~-~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (1088)
.-++..|. -++|+.+++.++... +.+....+ ....
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-------------------------------------------~yD~ec~n-~v~~ 422 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-------------------------------------------NYDIECEN-IVFL 422 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-------------------------------------------cccHHHHH-HHHH
Confidence 77888887 788899998888732 11211111 0000
Q ss_pred HHhcCCHHHHHH--HHHHHH------H---HcC---CcHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 535 LEQIHDTVAASV--LYRLIL------F---KYQ---DYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 535 ~~~~g~~~~A~~--~~~~~l------~---~~p---~~~~~~~~la--~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
+.+ ..|..|+. .+.+.+ . +.| .+.+.-+.|+ ..+...|++.++.-+-.-..++.| ++.++..
T Consensus 423 fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RL 500 (549)
T PF07079_consen 423 FVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRL 500 (549)
T ss_pred HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 000 11111111 111111 1 112 1233334444 446788999999988888888999 7999999
Q ss_pred hhhhhhcccchHHHHHHHHHh
Q 001392 599 LGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~a 619 (1088)
+|.+++...+|.+|..+|..+
T Consensus 501 lGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 501 LGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999999998853
No 197
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.31 E-value=0.013 Score=66.32 Aligned_cols=394 Identities=14% Similarity=0.073 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQR 222 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~ 222 (1088)
.+.+...|..++...|-....|...|..-++.|....+.++|++++.--|-+ ..+|.. ++.+....|+.+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3556666777777778777788888888888888888888888888877765 343432 34444455677777777777
Q ss_pred HHhhCCCCH---HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Q 001392 223 ALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT------GQHFLVEQLTET 293 (1088)
Q Consensus 223 al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~ 293 (1088)
|+.....+. ..|-.+......+++ +..-...|.+.++.--.....++..-.-+... -..+++..+-..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 777654422 233333333333333 55666666666654221111111110000010 011111111111
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhH-------hhHHHHHHHcCCHHHHHHHH
Q 001392 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPY-------YGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~-------~~la~~~~~~g~~~~A~~~~ 365 (1088)
.... ......+... +.....+..... .+...... ...-.++.........+-.|
T Consensus 217 ~~~~---------------~~~~~~~~~~---e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 217 VAER---------------SKITHSQEPL---EELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred HHhh---------------hhcccccChh---HHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 0000 0000000011 111111110000 00000000 01112222333344444455
Q ss_pred HHHHHh-----CC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 366 EKVLEI-----YP---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 366 ~~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
+..++. .| .....|......-...|+++...-.|++++--.......|+..+... ..|+..-|-..+..+.
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 555442 12 22345666666666778888888888888776667777787777777 6677777777666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCC
Q 001392 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (1088)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1088)
++.... .+.+...-+.+.-..|++..|...|+.....
T Consensus 359 ~i~~k~----~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------------------------------------- 395 (577)
T KOG1258|consen 359 KIHVKK----TPIIHLLEARFEESNGNFDDAKVILQRIESE--------------------------------------- 395 (577)
T ss_pred hhcCCC----CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---------------------------------------
Confidence 654332 2455555566666677777777777777663
Q ss_pred CcCCCCcchHHHHhHHHHHHhcCCHHHHHH---HHHHHHH--HcCCc-HHHHHHHHHH-HHHcCChHHHHHHHHHHHHHC
Q 001392 517 HVELPWNKVTVLFNLARLLEQIHDTVAASV---LYRLILF--KYQDY-VDAYLRLAAI-AKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~l~--~~p~~-~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~ 589 (1088)
. |....+-...+......|+.+.+.. ++..... .++.- ...+...+.. +.-.++.+.|...+.+++...
T Consensus 396 ---~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 396 ---Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred ---C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 2 4455555555556666677666663 3332222 11111 2223333333 344567777777777777777
Q ss_pred CCChhHHHhhhhhhhcc
Q 001392 590 GKYPNALSMLGDLELKN 606 (1088)
Q Consensus 590 p~~~~~~~~l~~~~~~~ 606 (1088)
|.+...+..+..+....
T Consensus 472 ~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 472 PDCKVLYLELIRFELIQ 488 (577)
T ss_pred CccHHHHHHHHHHHHhC
Confidence 77777666666554443
No 198
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.31 E-value=0.011 Score=71.84 Aligned_cols=409 Identities=18% Similarity=0.130 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCchhhHhhHHHHHH-HcCCHHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHhcCCHH
Q 001392 322 EKAGLYYMASVKEINKP-HEFIFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYP--DNC----ETLKALGHIYVQLGQIE 393 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~ 393 (1088)
..|+..++.+++..+.+ ...+.+++.+|.+++ ...+++.|..++++++.+.. +.. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45666666666422221 223445777887777 67788888888888876653 222 24456677777777666
Q ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHH--HH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 001392 394 KAQELLRKAAKIDPR----DAQAFIDLGE--LL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFE 465 (1088)
Q Consensus 394 ~A~~~~~k~l~~~p~----~~~~~~~la~--l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 465 (1088)
|...+.+.+..... .....+.+.. +. ..+++..|+..++.........+.+.- ..+....+.++...+...
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888888876433 2222222222 22 336899999999888877553322111 223333466677778888
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHH--HHHhcCCHHH
Q 001392 466 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVA 543 (1088)
Q Consensus 466 ~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~ 543 (1088)
.+++.++.+........ .... ..+....++..+-. ++...|++..
T Consensus 197 d~~~~l~~~~~~~~~~q-------------------------------~~~~--~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQ-------------------------------LDPS--VHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred hHHHHHHHHHHHHhhcc-------------------------------cCCC--CCcHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888888865321000 0000 11223334444433 3455677666
Q ss_pred HHHHHHHH---HH---HcC---C---------------------c------------HHHHHHHHHHHHHcCChHHHHHH
Q 001392 544 ASVLYRLI---LF---KYQ---D---------------------Y------------VDAYLRLAAIAKARNNLQLSIEL 581 (1088)
Q Consensus 544 A~~~~~~~---l~---~~p---~---------------------~------------~~~~~~la~~~~~~g~~~~A~~~ 581 (1088)
+...++++ +. ..| . . .-+|..-+......+..+.|.++
T Consensus 244 ~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~ 323 (608)
T PF10345_consen 244 SKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKF 323 (608)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHH
Confidence 66554443 22 111 0 0 12334444556666777788888
Q ss_pred HHHHHHHCCC-------C-------------------hhHHHhhhhhhhcccchHHHHHHHHHhhhcCC---C-----CC
Q 001392 582 VNEALKVNGK-------Y-------------------PNALSMLGDLELKNDDWVKAKETFRAASDATD---G-----KD 627 (1088)
Q Consensus 582 l~~al~~~p~-------~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~-----~d 627 (1088)
+.++++.-.+ . ..+....+++.+-.++|..|...+..+..... . ..
T Consensus 324 ~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 403 (608)
T PF10345_consen 324 LEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY 403 (608)
T ss_pred HHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh
Confidence 8887764211 0 01344567777788999999999988776421 1 23
Q ss_pred hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH--------HHHhcCCC---CHHHHhhHHHHHHhcCCchH---
Q 001392 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTS---NLYAANGAGVVLAEKGQFDV--- 693 (1088)
Q Consensus 628 ~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~al~~~p~---~~~a~~~la~~l~~~g~~~~--- 693 (1088)
++.++..|-. +... |+.+.|...|. .+....+. .+.+..++.+++...+.-..
T Consensus 404 ~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 404 PLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 4555555555 5555 99999999998 55555555 34556677777776665443
Q ss_pred -HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH-------HccCHHHHHHHHHHHHHHh-cCCCC----HHHHHHHHHHH
Q 001392 694 -SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF-------AQGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTH 760 (1088)
Q Consensus 694 -A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~-------~~g~~~~Ai~~~~~al~~~-~~~~~----~~~l~~La~~~ 760 (1088)
+..++.++..... +.+..++..+++++ ..-...++...+..+++.+ ....+ ..++..++..+
T Consensus 471 ~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 471 ELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred HHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4455554433221 12222333332221 1223458888888888876 33333 34456677777
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC
Q 001392 761 YEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 761 ~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
+ .|+..+.......++++....
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhh
Confidence 7 788888777666677665543
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.30 E-value=1.9e-06 Score=70.91 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=26.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
..|++++|+..|++++..+|++..+++.+|.+++..|++++|...+.+++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444444444444444444444444444444444444444444444443
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.29 E-value=0.01 Score=64.06 Aligned_cols=424 Identities=12% Similarity=0.027 Sum_probs=225.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
-+..-++-+|++...|+.+..-+-.+|.+++-.+.|+++..-.|--+.+|......-+..++|..-..+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999988888777888777766677788998888999888765443
Q ss_pred hhHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch------HHhHHHHHHHHHHH
Q 001392 196 PGAIRLGIGLCRYKLG---------QLGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1088)
Q Consensus 196 ~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~Al~~~~~a 260 (1088)
++|...-..-.+.+ ..-+|.+..-.+.-.+|.....|...+.....-.. ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 23322211111111 11222222222333567766677666655443221 12244445556666
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----
Q 001392 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---- 336 (1088)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---- 336 (1088)
+..--.+..-+. .+|+.-+.-+.++-.. ...| ...--|-.|...|+.......
T Consensus 188 l~tP~~nleklW---------~dy~~fE~e~N~~Tar-----------Kfvg---e~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 188 LQTPMGNLEKLW---------KDYENFELELNKITAR-----------KFVG---ETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred HcCccccHHHHH---------HHHHHHHHHHHHHHHH-----------HHhc---ccCHHHHHHHHHHHHHHHHhccccc
Confidence 554322221110 1111111111111100 0000 000012233333333322110
Q ss_pred CCCCchh-----------hHhhHHHHHHHc-----CC-HHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 337 KPHEFIF-----------PYYGLGQVQLKL-----GD-FRS-ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1088)
Q Consensus 337 ~~~~~~~-----------~~~~la~~~~~~-----g~-~~~-A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1088)
.+|-+.. -|.++...-... |+ ... ---.+++++...|-.+++|+.....+...++-+.|+..
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t 324 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT 324 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH
Confidence 0010000 122222221111 11 111 22245666666677777777777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 001392 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSFKDA 474 (1088)
Q Consensus 399 ~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~l~~a 474 (1088)
..+.+...|. ....++.+| ...+.+....+|+++...+... +..+..-.. .|+++...+++-+-
T Consensus 325 v~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 325 VERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHHHHHHH
Confidence 7766655554 556666677 5555555555566555433221 000000000 11221111111100
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH
Q 001392 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1088)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1088)
. ....-++..+...-.+..-.+.|..+|.++-+.
T Consensus 393 ~----------------------------------------------~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 393 I----------------------------------------------NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred H----------------------------------------------hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 0 011223333333333444467777777776654
Q ss_pred cCCcHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 555 YQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 555 ~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.--...+|..-|.+ +...|++..|...|+-.+...|+++.....+-.++...++-..|..+|+.++..
T Consensus 427 ~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 427 GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 32223444444444 557788999999999999999998887777778888889999999999877654
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.29 E-value=1.7e-05 Score=72.18 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS---CPGAIRL 201 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~~ 201 (1088)
|.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|.++...|++++|+.++++++...|+ + ..+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~ 79 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRV 79 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHH
Confidence 3567888888888899999999999888865443 568888888888889999999998888888777 4 55667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888888877664
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=1.8e-05 Score=87.85 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=79.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhH
Q 001392 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1088)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1088)
++...++++.|+.+|+++...+|+. ...++.++...++..+|+..+.+++...|.+...+...+.+++..++ +
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~---~ 250 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK---Y 250 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---H
Confidence 3344566777777777776666542 34466666666777777777777777777776666677777777766 6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
+.|+...+++....|.+...|..|+.+|...|+++.|+..++.+-
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777777777777777777777776666543
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.27 E-value=0.012 Score=63.94 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc--------CCchHHHHHHHHHHHHhcCCCCCCchhHHHHH--HHHH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK--------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINL--AHVY 724 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l--a~~~ 724 (1088)
+.-++|+.+++.+++..|.+...-+.. ..+.+. ..+..-+.+-.-+-+.+-.+....+...-.-| |..+
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v-~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIV-FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 447899999999999998887544322 211111 11222222222222222112222334444444 4667
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC----ChhHHhHHHHH
Q 001392 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS----NYTLRFDAGVA 793 (1088)
Q Consensus 725 ~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~nla~~ 793 (1088)
+.+|+|.++.-+-.-..+. .|.+.++..+|.+.+...+|.+|..++.. +-|+ |..+.-.+++|
T Consensus 473 ysqgey~kc~~ys~WL~~i---aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKI---APSPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HhcccHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 8899999998776655554 55899999999999999999999998864 3343 24455556666
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.4e-06 Score=70.27 Aligned_cols=65 Identities=34% Similarity=0.565 Sum_probs=36.5
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
+..|+|++|+..|++++..+|++ ..+++.+|.|+...|++++|...+.+++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555566666666666656655 455555666666666666666666666555555555544444
No 205
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.4e-05 Score=76.22 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
-.-|.-+|..|+|.+|..-|..+|...|..+ ..|...|.++++++.++.|+..+.+++.++|.+ ..+....+.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAea 177 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEA 177 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHH
Confidence 3446666666666666666666666666442 344555555666666666666666666666655 3444555666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
|.++..|+.|+.-|.++++.+|....+.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 6666666666666666666666544433
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.23 E-value=2.1e-05 Score=71.68 Aligned_cols=98 Identities=27% Similarity=0.265 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1088)
.+.+.+|.++-..|+.++|+.+|.+++......+....+++.+|.++...|++++|+..++..+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456667777777777777777777776633233344556667777777777777777777777776666 55666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l 403 (1088)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 677777777777777666554
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.22 E-value=6.2e-06 Score=68.87 Aligned_cols=62 Identities=29% Similarity=0.589 Sum_probs=29.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001392 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1088)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1088)
+++..++|+.|+.++++++..+|.+ +..++..|.|+..+|++.+|+..|+++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 3444444444444444444444444 3444444444444444444444444444444444443
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00056 Score=68.37 Aligned_cols=234 Identities=18% Similarity=0.205 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh----HHHHHH--HHHHHHHH----HHHhchhhhhhhhhHH
Q 001392 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV----RYERIA--ILNALGVY----YTYLGKIETKQREKEE 108 (1088)
Q Consensus 39 ~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~----~~~~~~--~~~~la~~----y~~~g~~~~~~~~r~~ 108 (1088)
.+.+|+..-.++.+...+++|..-|+..-+.+...+|-.+ .+++.. +-+.|-++ ...+|...
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpq-------- 139 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQ-------- 139 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcH--------
Confidence 5668999999999999999999888876555443332111 111100 11122222 22333322
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
+.+.-+.... ..+.....-+.+|.. +..+...++-+ ....+.++.++.-.|.|.-.+..+.+
T Consensus 140 ---esLdRl~~L~--------~~V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~ 202 (366)
T KOG2796|consen 140 ---ESLDRLHKLK--------TVVSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHS 202 (366)
T ss_pred ---HHHHHHHHHH--------HHHHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 1111111110 111111222222222 22333333322 23445556666666666666666766
Q ss_pred HHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----D--PENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 188 al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
++..+|...+.....+|.+-++.|+.+.|..+|+++-+. + ..+..+..+.+.+++..++ +..|...|.+++
T Consensus 203 vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn---~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 203 VIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN---FAEAHRFFTEIL 279 (366)
T ss_pred HHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc---hHHHHHHHhhcc
Confidence 666665544556666666666677776666666643322 1 1233344555555665555 666666666666
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001392 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300 (1088)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 300 (1088)
..+|.++.+.+..|.+.+..|+...|++..+.++...+.
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 667766666666666666666666666666666654433
No 209
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.9e-05 Score=75.23 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
-.-|.-+|..|+|.+|..-|..+|...|..+ ..++.+.|.|+.+++.++.|+....++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3446677888888888888888888887763 334667788888888888888888888888888888888888888
Q ss_pred HhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
.+... +++|+..|.+++..+|....+.-..+.+-
T Consensus 179 ek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 179 EKMEK---YEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred Hhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 88766 88888888888888888776665555543
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00023 Score=71.09 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCChhHHHhhhhhhhcccchHHHHHHHHHh
Q 001392 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 619 (1088)
.+..+..+++-+ ..+.+.++.++.-.|.|.-....++++++.+ |..|.....+|.+.++.|+.+.|..+|+..
T Consensus 165 ~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 165 EESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345555555533 3455566666777777777788888887777 566777778888888888888888888754
Q ss_pred hhcCCC-----CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHH
Q 001392 620 SDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1088)
Q Consensus 620 l~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A 694 (1088)
-+.... ........++-+ |.-. +++..|...|.+++..+|.++.+.++.|.++.-.|+...|
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 432211 112233334444 5555 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 001392 695 KDLFTQVQEAASGSVFVQMPDVWINLAHV 723 (1088)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~ 723 (1088)
++.++.+....|+.. .+..+.+||-.+
T Consensus 306 iK~~e~~~~~~P~~~--l~es~~~nL~tm 332 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRHY--LHESVLFNLTTM 332 (366)
T ss_pred HHHHHHHhccCCccc--hhhhHHHHHHHH
Confidence 999999999888542 234455555433
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.14 E-value=7.3e-06 Score=69.49 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC-C----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001392 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1088)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~-~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~ 780 (1088)
+...++.++|.+|..+|++++|+.+|++++......+ + +.++..+|.+|...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5577899999999999999999999999998742222 1 6678899999999999999999999998763
No 212
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.12 E-value=9.6e-07 Score=90.49 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=159.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1088)
.-..|..|+.+|.|++|+.+|.+++. ..|.++..+.+.+.+|++...|..|..-+..++.++.....+|...+.+-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999997 567777889999999999999999999999999999888999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCC-----HHH--HHHHHHHHHH
Q 001392 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-----IEV--LNNIGVIHFE 460 (1088)
Q Consensus 388 ~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~--~~~l~~~~~~ 460 (1088)
.+|...+|...++.++.+.|.+....-.++.+-. ..++. + .........+ ... ...-|..++.
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S---l~E~~------I-~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk 246 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS---LRERK------I-ATKSTPGFTPARQGMIQILPIKKPGYKFSK 246 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc---hHhhh------H-HhhcCCCCCccccchhhhccccCcchhhhh
Confidence 9999999999999999999997766555544331 11110 0 0000000000 011 1223566666
Q ss_pred cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCC
Q 001392 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540 (1088)
Q Consensus 461 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 540 (1088)
.|.++.++.++..-+.. ...+..+-.+ +..|.+.-+
T Consensus 247 ~~~~~~~i~~~~~~~A~-------------------------------------------~~~~~~L~~~-~~~~~KI~~ 282 (536)
T KOG4648|consen 247 KAMRSVPVVDVVSPRAT-------------------------------------------IDDSNQLRIS-DEDIDKIFN 282 (536)
T ss_pred hhccccceeEeeccccc-------------------------------------------cCccccCccc-HHHHHHHhh
Confidence 67776666665443321 0011111112 455566667
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
++.++.-..+.+...|.+.....+.+..-.-.|...++...++.++.+.|.+.....
T Consensus 283 ~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 283 SNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKE 339 (536)
T ss_pred cchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchh
Confidence 778877777777667766555555555555566677777777777777776655433
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.11 E-value=1.5e-05 Score=66.54 Aligned_cols=70 Identities=31% Similarity=0.388 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
..+|...++++.|+.+++.++..+|+++..+..+|.++...|++.+|+..|.++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678889999999999999999999999999999999999999999999999999999988877665543
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.11 E-value=0.00022 Score=67.45 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-DRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
..+.+|.+.+..+ |. ....+.+|..+...|++.+|...|++++.- ...++..++++|...+..+++..|...++
T Consensus 74 R~~Rea~~~~~~A----pT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 74 RHLREATEELAIA----PT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred HHHHHHHHHHhhc----hh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3444555544443 53 445788999999999999999999999863 46788999999999999999999999999
Q ss_pred HHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 187 RALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 187 ~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
++.+.+|.. .+...+.+|..+..+|.+..|...|+.++...| .+.+....+..+..+|.
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr 208 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGR 208 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcc
Confidence 999998864 467788999999999999999999999999888 45666777777888875
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.06 E-value=0.00062 Score=64.53 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHh-cCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHH
Q 001392 655 THLEKAKELYTRVIV-QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~-~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (1088)
|++.+|...|.+++. +.-.++..+.+++...+..+++..|...++++.+..|.- ..|+..+.+|.+|..+|.+..|
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~---r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF---RSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc---CCCCchHHHHHHHHhcCCchhH
Confidence 444444444444433 122344444444444455555555555555554444321 3444555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHH
Q 001392 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (1088)
Q Consensus 734 i~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~ 770 (1088)
...|+.++..+ +++....+.+..+.++|+..+|.
T Consensus 180 esafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 180 ESAFEVAISYY---PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHH
Confidence 55555555543 22333344444445555444443
No 216
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.05 E-value=0.00094 Score=73.93 Aligned_cols=117 Identities=20% Similarity=0.093 Sum_probs=81.9
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
...+++.+|.+...+..-+.-+..+|+..+|+.++..++-..|.. -.+++.+|.++.+.|...+|--++.-++.-.|.
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 334455555554444444444556788888888888887776654 346778888888888888887777777666665
Q ss_pred ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
. ...++.+|.++..+|.+......|..+.+.+|....+.
T Consensus 282 ~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 282 F-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred c-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 5 44477788888888888888888888888887654443
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.01 E-value=0.00034 Score=62.05 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~ 207 (1088)
+-..|..+...|+++.|++.|.+++...|.++.+|...|..+.-.|+.++|+..+.+++++.... ....+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888999999999999999999999999999999999999999999999999999986433 234578899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 001392 208 YKLGQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1088)
..+|+.+.|+.-|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887653
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.92 E-value=1.5e-05 Score=67.54 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=60.9
Q ss_pred CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 672 p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
|.-..+++++|.+|...|++++|+.+|+++++... ++..+....++.++|.++..+|++++|+.+|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45567889999999999999999999999998741 12223457789999999999999999999999999864
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.89 E-value=4.9e-05 Score=83.57 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=43.9
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.+|+++..|+.+|.+|+..|+|++|+..|++++.++|++..+ |+.+|++|..+|++++|+..|++++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666666666666666666666666666666666666533 666666666666666666666666664
No 220
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.073 Score=58.92 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=79.1
Q ss_pred CcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
+...+.-..+-..+...|-+.+|...|......-|-....+..+..+-.. .-+...+..+|..++.....++.+|..+
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 44556666677778888899999999999988888877777666655322 2347788999999999888999999988
Q ss_pred hhhhhcccchHHHHHHHHHhhhc
Q 001392 600 GDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
-..-...|..+.+-.++.++++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 88888888888877777777663
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.87 E-value=0.067 Score=58.09 Aligned_cols=479 Identities=11% Similarity=0.088 Sum_probs=237.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001392 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 150 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1088)
.++.-++.+|+|...|+.+..-+-.+|.+++-.+.|+++..-.|-. +.+|......-...+++......|.++|...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-EHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-cHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 4556678899999999999999999999999999999999888877 44454444444455778888888888886533
Q ss_pred CHHHHHHHHHHHHhhch------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 001392 230 NVEALVALAVMDLQANE------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT 303 (1088)
Q Consensus 230 ~~~a~~~la~~~~~~~~------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 303 (1088)
+.+.|...-..-.+.++ ...+-+|.+..-.+.-.+|.....|...+..+-.-..
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~-------------------- 167 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEE-------------------- 167 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccc--------------------
Confidence 24444333222222211 0112334443333444456555555554443321100
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Q 001392 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI---YPDNCETLK 380 (1088)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~ 380 (1088)
++ ....+.+.+.-...|.+++. .+-. ++-.++..-.+++. -+.++... ....+.. .
T Consensus 168 -------~~-kwEeQqrid~iR~~Y~ral~---tP~~------nleklW~dy~~fE~---e~N~~TarKfvge~sp~y-m 226 (660)
T COG5107 168 -------LG-KWEEQQRIDKIRNGYMRALQ---TPMG------NLEKLWKDYENFEL---ELNKITARKFVGETSPIY-M 226 (660)
T ss_pred -------cc-cHHHHHHHHHHHHHHHHHHc---Cccc------cHHHHHHHHHHHHH---HHHHHHHHHHhcccCHHH-H
Confidence 00 01123334455555666553 1111 11111111111111 11111100 0001110 0
Q ss_pred HHHHHHHhcCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHH-h-----cCC-HHHHH-HHHHHHHHHHHhcCCCCC
Q 001392 381 ALGHIYVQLGQIEKAQELL-----RKAAKIDPRDAQAFIDLGELL-I-----SSD-TGAAL-DAFKTARTLLKKAGEEVP 447 (1088)
Q Consensus 381 ~la~~~~~~g~~~~A~~~~-----~k~l~~~p~~~~~~~~la~l~-~-----~~~-~~~A~-~~~~~a~~~~~~~~~~~~ 447 (1088)
.--..|....+....+..+ +++-+.......-|.+....- . .++ ..+-+ -++++++..++- .
T Consensus 227 ~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~-----~ 301 (660)
T COG5107 227 SARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYY-----A 301 (660)
T ss_pred HHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhh-----h
Confidence 0000011111111111000 000000000011122222211 1 111 11111 123444444332 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
+++|+.........++-+.|+.....++.. .+.+
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~----------------------------------------------spsL 335 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM----------------------------------------------SPSL 335 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC----------------------------------------------CCch
Confidence 567776666666777777777766665542 3335
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhh
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK---ARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~ 604 (1088)
.+.++.+|...++.+....+|.++...-. --+..+..-. .-|+++...+++-+-. ..-..+|..+.+.-.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~----r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~ 408 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLK----RKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVL 408 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHH----HHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHH
Confidence 66677777776666666666666543100 0000000000 0123322222221111 122334444445445
Q ss_pred cccchHHHHHHHHHhhhcC-CCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHH
Q 001392 605 KNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~-~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~ 683 (1088)
+..-...|..+|-++-+.. ..++.|..+++.. |... |++.-|..+|+--+...|+++...+..-.
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E--~~~~------------~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE--YYAT------------GDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH--HHhc------------CCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 5556778888888776654 5566666555443 3344 77788888888888888887777777777
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001392 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 684 ~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 746 (1088)
.+...++-..|..+|+++++..... .-..+|-.+...-..-|+...++.+=+.+...+|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKT---QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHh---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 7777888888888888776654311 12345555555556667777777766666666543
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0061 Score=60.28 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=71.5
Q ss_pred hHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-----HHH
Q 001392 680 GAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQI 752 (1088)
Q Consensus 680 ~la~~l~~-~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~~~ 752 (1088)
.+|.+|.. ..++.+|+..|+++-+-+.+.... .....++..+..-...++|.+||..|+++....-+++- -..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 34555543 367778888888887776542111 12345666677777889999999999998775322221 122
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 753 l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
++.-|.|++-..+.-.+...+++...++|.-..
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 344566777779999999999999999996433
No 223
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.83 E-value=0.00036 Score=61.85 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=83.5
Q ss_pred hhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHH
Q 001392 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYL 756 (1088)
Q Consensus 679 ~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~L 756 (1088)
..-|.++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-++++++..+.... .+.+..-
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3457888899999999999999999988 78899999999999999999999999999988543333 5567778
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
|.+|...|+.+.|..-|..+-++...
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 88999999999999999988887653
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0046 Score=61.11 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=74.0
Q ss_pred HHHhHHHHHHhc-CCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-----
Q 001392 527 VLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----- 594 (1088)
Q Consensus 527 ~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~----- 594 (1088)
.+..+|.+|..- .++++|+.+|+++-.-... -..+++..+......++|.+|+..|+++....-+++.
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 445567777655 7889999999988764332 2457788888888999999999999998877655554
Q ss_pred --HHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
.++.-|.+++-..+.-.+...+++.....|.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3345577777778877788888887777776
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.82 E-value=7.9e-05 Score=81.96 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=65.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+++++|.||..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999832 46999999999999999999999999997
No 226
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.78 E-value=0.005 Score=73.37 Aligned_cols=264 Identities=19% Similarity=0.178 Sum_probs=186.4
Q ss_pred chHHHHhHHHHHHhc-----CCHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHH
Q 001392 524 KVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKV 588 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~l~~al~~ 588 (1088)
+....+.+|.+|..- .+++.|+.+|+.+... .-.++.+.+.+|.+|.... +...|+.++.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 667777788877653 5889999999998761 1225567888999988753 667799999998776
Q ss_pred CCCChhHHHhhhhhhhccc---chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 589 NGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
. ++.+.+.+|.++..-. ++..|..+|..+...+ ...+.+.++.+ |....... .+...|..+|.
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G~gv~--------r~~~~A~~~~k 388 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELGLGVE--------RNLELAFAYYK 388 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhCCCcC--------CCHHHHHHHHH
Confidence 5 6778888999887765 5789999999998876 45667777777 66552222 67899999999
Q ss_pred HHHhcCCCCHHHHhhHHHHHHhc-CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH------c----cCHHHHH
Q 001392 666 RVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA------Q----GNFALAM 734 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~------~----g~~~~Ai 734 (1088)
++...+ ++.+...++.++... +.++.+...+....+..- .....+.+.+... . .+...+.
T Consensus 389 ~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~-------~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 389 KAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGY-------EVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhh-------hHHhhHHHHHHHhccccccccccccchhHHH
Confidence 999988 556666666655543 888888877777776542 1112222222211 1 2566677
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhcCCCHH
Q 001392 735 KMYQNCLRKFYYNTDAQILLYLARTHYEA----EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTAD 810 (1088)
Q Consensus 735 ~~~~~al~~~~~~~~~~~l~~La~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~ 810 (1088)
..|.++.. ..++.+...||.+|+.. .++..|...|.++.... ....||++.+ ...+.
T Consensus 460 ~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~-~e~g~----------- 520 (552)
T KOG1550|consen 460 SLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM-HEHGE----------- 520 (552)
T ss_pred HHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH-HhcCc-----------
Confidence 77666654 35678888999999885 34888999999988877 8999999995 44443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Q 001392 811 EVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 811 ~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
..-. +..|.+++.+.+..+
T Consensus 521 ---g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 521 ---GIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred ---Ccch-hHHHHHHHHHHHhcC
Confidence 1122 677777777776644
No 227
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.77 E-value=0.00027 Score=67.36 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc
Q 001392 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~ 141 (1088)
.|+.|.+.+......+|.++..++.-|.+++..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555443
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0021 Score=66.65 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=133.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc-CCCCChHHHHHhhhHHHHHHh
Q 001392 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFAAL 643 (1088)
Q Consensus 565 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~d~~a~~~lg~~~y~~~~ 643 (1088)
-+.+....|++.+|.....+.+.-.|.+..++..--.+++-+|+...-...+++++.. ++....|+++. |.. -|..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~-Gmy-aFgL- 185 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH-GMY-AFGL- 185 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH-HHH-HhhH-
Confidence 3455667899999999999999999999999999889999999999999999998876 44433444321 211 1111
Q ss_pred hhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 001392 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 723 (1088)
Q Consensus 644 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~ 723 (1088)
.+.|.|++|.+.-+++++++|.+.++...++.++...|++.++.++..+--..-..+. .....-|...+.+
T Consensus 186 --------~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 186 --------EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-MLASHNYWHTALF 256 (491)
T ss_pred --------HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-HHHhhhhHHHHHh
Confidence 1239999999999999999999999999999999999999999999887655432111 1223456677888
Q ss_pred HHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 724 YFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 724 ~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
++..+.|+.|+.+|..-+-+-....|.
T Consensus 257 ~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhcccchhHHHHHHHHHHHHHhhccch
Confidence 999999999999998766544344553
No 229
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.73 E-value=0.0069 Score=67.39 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHH
Q 001392 676 YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754 (1088)
Q Consensus 676 ~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~ 754 (1088)
+...++|-+|. -.|+...|+.++..+....|. .......+||.+++..|-...|-.++.++|.. ....|-..+
T Consensus 607 w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~sepl~~~ 680 (886)
T KOG4507|consen 607 WLILNEAGLYWRAVGNSTFAIACLQRALNLAPL----QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--NSSEPLTFL 680 (886)
T ss_pred EEEeecccceeeecCCcHHHHHHHHHHhccChh----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cccCchHHH
Confidence 33344555554 579999999999999988873 33456789999999999999999999999998 466688999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 755 ~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.+|+++....+.+.|++.|+.|+++.|+++.+.-.+-.+
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999999999999887766554
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.73 E-value=0.001 Score=71.80 Aligned_cols=127 Identities=12% Similarity=0.186 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (1088)
+..+.|..+|.++++..+.+...|...|.+-.. .++...|..+|+.+++..| .++..|..+...+...|+...|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 779999999999997666677888888888666 5666669999999999998 7899999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhH
Q 001392 734 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (1088)
Q Consensus 734 i~~~~~al~~~~~~~-~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 786 (1088)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999998854333 34677777778888999999999999999999986553
No 231
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.70 E-value=0.016 Score=69.15 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG--- 176 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g--- 176 (1088)
...|..+|+.+... .+..+.+.+|.+|+.- .+.+.|+.+|..+... .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45788888887654 4677777778777655 5789999999888761 1125667888888888743
Q ss_pred --ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhH
Q 001392 177 --RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1088)
Q Consensus 177 --~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1088)
++..|+.+|.++-.....+ ..+.+|.|+..-. ++..|..+|..|... .+..+.+.++.++..- |-..+.
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6788999998888776544 4677888887765 567888888888654 5778888888777653 223347
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTET 293 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 293 (1088)
..|..++.++...+ ++.+...++.++... +.+..+...+..
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHH
Confidence 88888888888877 444444444443322 555444443333
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.001 Score=71.88 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
+|+.......+.+..+.|..+|.++++..+.+...|...|.+.+. .++.+.|..+|+.+++..|.+ ..++......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 344444444444444555555555543333334444444444344 233333555555555555544 334444444444
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
..|+.+.|+.+|++++..-|... ..|......-...|+ ......+..++.+..|..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPED 140 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhh
Confidence 55555555555555544433322 334444444444554 555555555555555543
No 233
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.65 E-value=0.00048 Score=65.74 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCC-
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRG----------RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ- 212 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----------~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~- 212 (1088)
|+.|.+.++.....+|.++.+++.-|.++..+. -+++|+.-|+.++.++|+. ..+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhh
Confidence 688999999999999999999988888877653 3678999999999999999 7788889999987763
Q ss_pred ----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 213 ----------LGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 213 ----------~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
|++|..+|+++...+|+|......|...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7899999999999999998887777665
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0083 Score=59.77 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=111.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHH-HHHH
Q 001392 350 QVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKID-----PRDAQAF-IDLG 417 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-----p~~~~~~-~~la 417 (1088)
.+|...++|++|..++.++.+-+.++ ..++-..+.+...+..+.++..+|+++..+. |+....- -.-+
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 34444444555555544444332221 1233333444444455555555555554432 3322222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001392 418 ELLISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1088)
Q Consensus 418 ~l~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1088)
.++...+++.|+.+|++++.+....+... ..+.+...+.++.+...|.+|-..|.+-......
T Consensus 119 k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---------------- 182 (308)
T KOG1585|consen 119 KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---------------- 182 (308)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH----------------
Confidence 44577889999999999998877643322 2467777888899999999988888765442110
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHc
Q 001392 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKAR 572 (1088)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~ 572 (1088)
+ ..-+.....+.....++....++..|...|+..-++ .|+...+.-+|...| ..
T Consensus 183 --------------~-------~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 183 --------------C-------DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred --------------H-------hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 0 011223334445555666667899999988876553 344455555555444 56
Q ss_pred CChHHHHHHHHH
Q 001392 573 NNLQLSIELVNE 584 (1088)
Q Consensus 573 g~~~~A~~~l~~ 584 (1088)
|+.++....+..
T Consensus 241 gD~E~~~kvl~s 252 (308)
T KOG1585|consen 241 GDIEEIKKVLSS 252 (308)
T ss_pred CCHHHHHHHHcC
Confidence 777776665543
No 235
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00014 Score=71.64 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=69.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
..|..++....|..|+..|.+++.++|.. +..+.+.+.|++++.+++.+.....++++++|+.+.+.+.+|...+....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34555666777777777777777777777 56677777888888888888777888888888777777777777777766
Q ss_pred HHhHHHHHHHHHHHHHh
Q 001392 247 AAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~ 263 (1088)
+..|+..+++++.+
T Consensus 94 ---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 ---YDEAIKVLQRAYSL 107 (284)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 77777777777554
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00048 Score=68.08 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=94.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~ 426 (1088)
-|..++....|..|+.+|.+++.++|..+..+.+.+.||++.++++.+.....+++++.|+.+..++.+|..+ ....+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4555666677888889999999999988888889999999999999999999999999999999999998888 888889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001392 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (1088)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (1088)
.|+..+.++..+......+....+...|-.+-...=...++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 9999999888887766555445555555544444333334333
No 237
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.21 Score=55.42 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQ 190 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~ 190 (1088)
.-..+|..+....+.++..|.......-+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 556788899988899999999999988888989999999999999999999999999988888776 9999999999999
Q ss_pred hCCCChhHHH
Q 001392 191 VHPSCPGAIR 200 (1088)
Q Consensus 191 ~~p~~~~~~~ 200 (1088)
.+|++ +.+|
T Consensus 169 ~npds-p~Lw 177 (568)
T KOG2396|consen 169 FNPDS-PKLW 177 (568)
T ss_pred cCCCC-hHHH
Confidence 99999 5544
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.57 E-value=0.1 Score=60.74 Aligned_cols=121 Identities=20% Similarity=0.183 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
....+..++....... |..+-..+..|+++...|+.++|+..|++++.... -..-....++.++.++....+|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4455666666666443 55556677777777777777777777777663111 1122345577888888888888888
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHhC
Q 001392 362 LTNFEKVLEIYPDN-CETLKALGHIYVQLGQI-------EKAQELLRKAAKID 406 (1088)
Q Consensus 362 ~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~k~l~~~ 406 (1088)
..+|..+.+.+.-+ ....+..|.|+...++. ++|..+|.++....
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 88888888865543 34555667788888887 88888888876543
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.009 Score=59.52 Aligned_cols=203 Identities=15% Similarity=0.111 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001392 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1088)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1088)
..+..-+.+|...+++++|...+.++.+-..++ ..++-..+.+. ....+.++..+|+++...+...|.+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 345555777888899999999999998654443 23444555566 78899999999999999999888777666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHH
Q 001392 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1088)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
.-...+.-....-+.+.|+.+|++++..-.. +. ....-...+-
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~-----~d--------------------------------r~~ma~el~g 154 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEE-----DD--------------------------------RDQMAFELYG 154 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-----cc--------------------------------hHHHHHHHHH
Confidence 5555666667888999999999999873110 00 0111334566
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHH------HcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC----CCChhHHHhh
Q 001392 530 NLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GKYPNALSML 599 (1088)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p~~~~~~~~l 599 (1088)
..++++.+...+.+|...+.+-.. ..|.....+.....+++...++..|..+++...++. |++..+..+|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 678889999999998877765433 233334456666667777889999999999877654 4445566565
Q ss_pred hhhhhcccchHHHHHHHH
Q 001392 600 GDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~ 617 (1088)
-.. +..|+.++...++.
T Consensus 235 L~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 235 LTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHH-hccCCHHHHHHHHc
Confidence 555 35577776666654
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.56 E-value=0.0044 Score=68.46 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=118.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhh
Q 001392 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (1088)
Q Consensus 568 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~ 647 (1088)
-..+..+...-++.-.+++.++|+++.++..++.- ...-..+|..+|+++++.... .++.. ....
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~----- 241 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ----- 241 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh-----
Confidence 34456677777888888888888888888777642 233467778888877765322 11111 0000
Q ss_pred cChhHHHHHHHHHHHHHHHHHhcCCC--CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001392 648 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1088)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (1088)
...-+-..+..-+. .+++...+|.+..+.|+.++|++.|+.+++..|.. ++..++.+|..+++
T Consensus 242 ------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LL 306 (539)
T PF04184_consen 242 ------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALL 306 (539)
T ss_pred ------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHH
Confidence 00001111111112 35566788999999999999999999999887732 46679999999999
Q ss_pred HccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcc---------------HHHHHHHHHHHHHhCCCChh
Q 001392 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~-~g~---------------~~~A~~~l~~al~~~p~~~~ 785 (1088)
.++.|.++..++.+. .....+..+.+.|.-+..-.+ .|+ -..|.+.+.+|++.+|.-|.
T Consensus 307 elq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 307 ELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 999999999886553 211123445555544333222 111 23477889999999998764
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.53 E-value=0.0017 Score=75.36 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcC
Q 001392 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124 (1088)
Q Consensus 45 ~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~ 124 (1088)
.+....=-.|+-+.++++|..+..... ....+..+..|+.+..-.+..... . ...+...|..++.......
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~-------i~~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~y 263 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSEN-------IRSPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKRY 263 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCC-------cchHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHhC
Confidence 333444455788888888888755321 111233333333222222222210 1 3456678999999999999
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1088)
|+.+..++..|.++...|+.++|+..|+.++..... ....++.+|.++..+++|++|...|.++.+.+..+.....
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 999999999999999999999999999988743221 2456888999999999999999999999998888777778
Q ss_pred HHHHHHHHHcCCH-------HHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQL-------GKARQAFQRALQ 225 (1088)
Q Consensus 201 ~~lg~~~~~~g~~-------~~A~~~~~~al~ 225 (1088)
+..|.|+..+|+. ++|...|.++-.
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8899999999988 666666665543
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.53 E-value=0.00022 Score=52.29 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
|.+|+.+|..|...|++++|+..|+++++.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567888888888888888888888888888888888887764
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0049 Score=64.01 Aligned_cols=162 Identities=12% Similarity=0.082 Sum_probs=126.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHH
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-YPDN---CETLKALGHIY 386 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~ 386 (1088)
-+.+....|++.+|...+.+.++ ..|....++..--.+++..|+...-...+++++.. +|+. ..+.-.++..+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 34456677899999999999998 55666666666777888899999999999999876 5554 45666778888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001392 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (1088)
Q Consensus 387 ~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (1088)
...|-+++|.+.-+++++++|.+..+...++.++ ..+++.++.++..+....-... .-....-|...+.++...+.|+
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-WMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-hHHHhhhhHHHHHhhhcccchh
Confidence 8999999999999999999999999999999999 8999999988876654433211 1111234556788888999999
Q ss_pred HHHHHHHHHHh
Q 001392 466 SAHQSFKDALG 476 (1088)
Q Consensus 466 ~A~~~l~~al~ 476 (1088)
.|+.+|..-+-
T Consensus 265 ~aleIyD~ei~ 275 (491)
T KOG2610|consen 265 KALEIYDREIW 275 (491)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.47 E-value=0.0033 Score=69.45 Aligned_cols=165 Identities=15% Similarity=0.167 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CC-
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------DN- 161 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~- 161 (1088)
|+.+...-++.-.+|++++|+.+.+|+.++.-.. ....+|..+|+++++... .+
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 3455667788889999999999999988875322 235667777776665311 01
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHH
Q 001392 162 -VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALA 238 (1088)
Q Consensus 162 -~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la 238 (1088)
+.+...+|.|+.+.|+.++|++.|+.+++..|. +...++..+..|+..++.|.++...+.+.-.. -|+.....+.-+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 345577899999999999999999999998876 34668899999999999999999999886433 245555555555
Q ss_pred HHHHhh-ch------------HHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 239 VMDLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 239 ~~~~~~-~~------------~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
.+..+. ++ ...-..|++.+.++++.||.-+..+.
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 443331 11 11234577889999999998876543
No 245
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.5 Score=56.69 Aligned_cols=350 Identities=14% Similarity=0.152 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcC-CCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHH
Q 001392 39 PLDLWLIIAREYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (1088)
Q Consensus 39 ~~~~~~~la~~y~~~g~~~~a~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~ 117 (1088)
+++---....++.-.+-..+-+++|++++ ++++ |++. ..+.+.|.-.-.+. + -...+.+.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~---Fse~----~nLQnLLiLtAika---d---------~trVm~YI 1043 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV---FSEN----RNLQNLLILTAIKA---D---------RTRVMEYI 1043 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc---cccc----hhhhhhHHHHHhhc---C---------hHHHHHHH
Confidence 33334444567778888888888888864 3221 3222 11222221111111 1 11345555
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
+++...|. . ..|.+....+-|++|..+|.+. .-|..+...+. -..++.+.|.++.+++- .+
T Consensus 1044 ~rLdnyDa---~---~ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VLi---e~i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1044 NRLDNYDA---P---DIAEIAIENQLYEEAFAIFKKF----DMNVSAIQVLI---ENIGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred HHhccCCc---h---hHHHHHhhhhHHHHHHHHHHHh----cccHHHHHHHH---HHhhhHHHHHHHHHhhC------Ch
Confidence 55544332 1 2466777788889999888764 12333333222 24466667766665542 26
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1088)
.+|..+|.+-.+.|...+|+..|-++ +++..+.....+....|. |++-+.++.-+.+.-. .+.+-..|...
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 78889999999999999999988765 456666677777777777 8877777776655432 22233445556
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCC
Q 001392 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (1088)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 357 (1088)
|...++..+.+.++. .|.. .-.-..|.-++..|.|+.|.-+|...- .|..++..+..+|+
T Consensus 1176 yAkt~rl~elE~fi~--------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vS-----------N~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVS-----------NFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHhchHHHHHHHhc--------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHH
Confidence 666776655544432 1222 334567888888888988887776543 26778888889999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001392 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1088)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~~~~A~~~~~~a 435 (1088)
|+.|....+++ ++..+|.....++...+.+.-|.-+ .++ --+..-+-.+...| ..|-+++-+..++.+
T Consensus 1236 yQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiC-----GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1236 YQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQIC-----GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhc-----CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 99998888776 4566777777777666655444221 111 11344455666677 777777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 436 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 471 (1088)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l 471 (1088)
+.+-... ...+..+|.+|.+- ++++-.+++
T Consensus 1306 LGLERAH-----MgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1306 LGLERAH-----MGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred hchhHHH-----HHHHHHHHHHHHhc-CHHHHHHHH
Confidence 6653331 44555566665543 334433333
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.42 E-value=0.015 Score=63.84 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH----CCCChhHHHhhhhhhhc---ccchHHHHHHHHHhhhcCCCCChHHH
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 631 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~d~~a~ 631 (1088)
++....+-..|....+|+.-+.+.+.+-.+ -++.+.+.+.+|.++.+ .|+.++|+.++..++.....+++-++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344455555566666666666666655544 34455666677777776 67777777777776665555566666
Q ss_pred HHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHH
Q 001392 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1088)
Q Consensus 632 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~ 695 (1088)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++.-.|.-.+..
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccch
Confidence 667777 66553321111 11559999999999999996 5566666777777777544433
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.00036 Score=51.17 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677777777777777777777777777777777777664
No 248
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.36 E-value=0.00024 Score=77.81 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
...|+.|+..|.++++++|+.+..+-.++.+++..++|..|+.-+.++++.+|....+|+..|.+....+.+.+|+..|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCChhHHHHHHHHH
Q 001392 187 RALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~ 206 (1088)
....+.|+. +.+...+..|
T Consensus 97 ~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 97 KVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HhhhcCcCc-HHHHHHHHHH
Confidence 666666666 3433333333
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.33 E-value=0.23 Score=53.71 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001392 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1088)
Q Consensus 232 ~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 299 (1088)
.++..++.+++..+......+|...+..+-...|+.+.++..-..+....++.+.+...+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 34667778888877777778888888888777888777776666666667778888888888876543
No 250
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.33 E-value=0.66 Score=55.55 Aligned_cols=277 Identities=17% Similarity=0.058 Sum_probs=166.1
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch-hhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc
Q 001392 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-----DN 375 (1088)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 375 (1088)
+...+.+..-+..+...|...+|+...-.+- +|... ......+.-++..++..- +..+++.-| .+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 4446777888888888999999988765542 22221 122233333444444332 333333333 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~--~-------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
+......+.......++.+|..++.++...-|. . ....-..+.+. ..++++.|....+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 566666777778888999999988887654332 1 12222233444 7899999999999999998886666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch
Q 001392 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1088)
....++..+|.+..-.|++.+|..+...+.+..... +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------------------------------------~~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-------------------------------------DVYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------------------------------------ccHHHHH
Confidence 667888899999999999999999999887742100 0112244
Q ss_pred HHHHhHHHHHHhcCCHHHHH--HHHHHH----HHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH----CCCChh-
Q 001392 526 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 594 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~- 594 (1088)
.+.+..+.++..+|+...|. ..|... +...|-........+.++...-+++.+..-....+.. .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 55566678888888443333 223222 2233432222222222222222244444444333333 233222
Q ss_pred --HHHhhhhhhhcccchHHHHHHHHHhhhcCC
Q 001392 595 --ALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1088)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 624 (1088)
+++.++.++...|+.++|...+..+.....
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 234678888888888888888887766443
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.33 E-value=0.066 Score=60.61 Aligned_cols=151 Identities=13% Similarity=0.033 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCCc
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEF 341 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~ 341 (1088)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+..+...|+..+|+..+...+. ..... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~-~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN-ID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-cc
Confidence 3345567788888888889998888888887764322 222567788888888888998899888888776 21111 00
Q ss_pred hhhHhhHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCHHHH
Q 001392 342 IFPYYGLGQVQLK--LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL------GQIEKAQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 342 ~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~k~l~~~p~~~~~~ 413 (1088)
......+...... ............ ......++..+|...... +..+.++..|..++..+|....+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred cccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 0000000000000 000000000000 011234556666666555 677777777777777777777777
Q ss_pred HHHHHHH
Q 001392 414 IDLGELL 420 (1088)
Q Consensus 414 ~~la~l~ 420 (1088)
+.+|..+
T Consensus 296 ~~~a~~~ 302 (352)
T PF02259_consen 296 HSWALFN 302 (352)
T ss_pred HHHHHHH
Confidence 7777654
No 252
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.24 E-value=0.00049 Score=75.50 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g 211 (1088)
-..+..++.-+.|+.|+..|.+++.++|+++..+-.++..+++.++|..|+.-+.++++.+|.. ...|+..|..+..++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3467778888999999999999999999999999999999999999999999999999999998 677899999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.+.+|...|+....+.|+.+.+...+..+..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999999988777665543
No 253
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0053 Score=61.01 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
..++..-|.-++..|+|.+|...|..|+..-......+.... ...+++......+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-------------------------~eW~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE-------------------------PEWLELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC-------------------------hHHHHHHHhhhHH
Confidence 456677788999999999999999999863211111000000 0001122335567
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 594 (1088)
+.|++.|+...|++-++++....++..+|.+..+|++.|.+....=+..+|..-|..++.++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8889999999999999999999999999999999999999988888889999999999998886443
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.066 Score=58.83 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHHHHH
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQRA-LQLDPENVEALV 235 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~a~~ 235 (1088)
....+-.+|....+|+.-+.+++.+-.+ -++. ..+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3444444555555666555555554443 1222 4445556666666 66666666666663 333444566666
Q ss_pred HHHHHHHhh------chHHhHHHHHHHHHHHHHhCCCCH
Q 001392 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 236 ~la~~~~~~------~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
.+|.+|... .+....++|+..|.+++..+|+.-
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 666555432 123347888999999998886543
No 255
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.11 E-value=0.00043 Score=47.19 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=18.4
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001392 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~ 148 (1088)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.10 E-value=0.34 Score=54.71 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=110.6
Q ss_pred CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHH-HhcCCC--
Q 001392 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYNT-- 748 (1088)
Q Consensus 672 p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~-~~~~~~-- 748 (1088)
......+..++.+..+.|+++.|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .+....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345667888999999999999999999999886532211 2578889999999999999999999999888 222110
Q ss_pred ----------------------C-------HHHHHHHHHHHHhh------ccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 749 ----------------------D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 749 ----------------------~-------~~~l~~La~~~~~~------g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
. ..++..+|.-.... +..+++.+.|..+.+++|.....++++|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1 34455556555556 777888999999999999999999999997
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001392 794 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 794 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
+.......-.... ...+ .....-+..|+..|-.-...+
T Consensus 302 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 302 NDKLLESDPREKE-ESSQ-EDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HHHHHHhhhhccc-ccch-hHHHHHHHHHHHHHHHHHhhC
Confidence 6555442221111 1111 233444555666665544444
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.09 E-value=0.22 Score=53.81 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=79.0
Q ss_pred chHHHHhHHHHHHhcC-CHHHHHHHHHHHHHHc----------CCc----HHHHHHHHHHHHHcCChH---HHHHHHHHH
Q 001392 524 KVTVLFNLARLLEQIH-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEA 585 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~----------p~~----~~~~~~la~~~~~~g~~~---~A~~~l~~a 585 (1088)
-..++++.|......+ +++.|..++++++..- |+. ..++..++.++...+.++ +|..+++.+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4568899999999999 9999999999998752 111 446777888888777654 456666667
Q ss_pred HHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCC
Q 001392 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1088)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 624 (1088)
-...|+.+.++...-.++.+.++.+.+...+.+++...+
T Consensus 114 ~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 677788888887777777778999999999999998765
No 258
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.13 Score=52.18 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=146.0
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1088)
.|+++...++..+|.+-.+|..+-.++-..+ ++.+-+.++..++..+|.|...|..+-.+.-..|++. .-+.+.+.++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776654 5788899999999999999999999999999999988 8899999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-c--hHHhHHHHHHHHHHHHHhCCC
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-N--EAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~--~~~~~~~Al~~~~~al~~~p~ 266 (1088)
..+..+ -.+|...--|+...+.++.-+.+...+++.+-.|-.||...-.+.... | .....+.-+.+..+.+.+.|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988877 566777788888888899999999999999888877776543322221 1 112356677888899999999
Q ss_pred CHHHHHHHHHHHHh-cC--CHHHHHHHHHHHH
Q 001392 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1088)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~~l 295 (1088)
+..+|+.|..++.. .| .+..+..+...+.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999888875 44 2344444444444
No 259
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.08 E-value=0.11 Score=56.78 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
+|++..|.+-+..+++..|.+|......+.+....|.|+.|...+..+-..-..-..+...+-+.++..|+++.|+....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 56777888888889999999999999999999999999999999987766655556677777788899999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
-++...-.. +.+....+...-.+|-++++...|++.+.++|.....|
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888766666 44444445566788999999999999999988644333
No 260
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.07 E-value=0.00044 Score=47.13 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=20.3
Q ss_pred HHHHHhcCCCCHHHHhhHHHHHHhcCCchHHH
Q 001392 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1088)
Q Consensus 664 ~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~ 695 (1088)
|+++++++|+|+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.07 E-value=0.66 Score=55.57 Aligned_cols=238 Identities=15% Similarity=0.081 Sum_probs=141.6
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN- 594 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~- 594 (1088)
+......+.......++.+|..+..++...-|. .....-..+.+....|+++.|.++.+.++..-|.+..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 344444556666677777777777766653332 1233444566677788888888888888877665433
Q ss_pred ----HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHH-----hhhHHHHHHhhhhhcChhHHHHH--HHHHHHH
Q 001392 595 ----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS-----LGNWNYFAALRNEKRAPKLEATH--LEKAKEL 663 (1088)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~-----lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~~ 663 (1088)
++..+|.+..-.|++.+|..+...+.+.....+.+-+.. -..+ .... |+ +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~~ 561 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEKA 561 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHHH
Confidence 566777788888888888888877776544444442211 1222 2222 42 2222222
Q ss_pred H----HHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCch-hHHHHHHHHHHHccCHHHHHHHH
Q 001392 664 Y----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMP-DVWINLAHVYFAQGNFALAMKMY 737 (1088)
Q Consensus 664 ~----~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~-~~~~~la~~~~~~g~~~~Ai~~~ 737 (1088)
| .+-+...|...+..-..+.++...-+++.+..-.....+.... ...+..+ -+++.|+.+++..|++++|....
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3 2334445655555555555554443466666666555554321 1111122 23358899999999999999999
Q ss_pred HHHHHHhcCCC-C----HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 738 QNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 738 ~~al~~~~~~~-~----~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
..+......+. . ..+.......|...|+...|...+.+
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99888765542 1 12222233445668999999888766
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.94 Score=52.19 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1088)
+++|...|-.+-.. + ....++...|+|-.+.+++...-. ...+.....++..+|..+.....++.|.++|.
T Consensus 750 feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766543221 1 223456778888888777764321 12233446789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
..-. .-+++.+++....|++- +.+...-|++...+-.+|.++...|.-++|.+.|-+.- .|.
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk- 882 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK- 882 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-
Confidence 7642 33456777777777653 34444458888999999999999999999999886642 221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1088)
Q Consensus 410 ~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a 474 (1088)
+ .+..+...+++.+|.+..++. ..+....+....+.-+...++.-+|++..+++
T Consensus 883 --a--Av~tCv~LnQW~~avelaq~~-------~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 --A--AVHTCVELNQWGEAVELAQRF-------QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred --H--HHHHHHHHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 122233556677776654432 11111223333444556667788888877776
No 263
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0049 Score=61.24 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDN----------VPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
+.++...|+-++..|+|.+|...|..++.. .|.. .+.+++.+.|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356677888888888888888888777532 2322 2334444444455555555555555555
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
...|.+ ..+++..|.+....=+..+|..-|.++|+++|
T Consensus 258 ~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 555544 34444444444444444555555555555444
No 264
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=1 Score=52.46 Aligned_cols=304 Identities=14% Similarity=0.079 Sum_probs=151.3
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-hcCC
Q 001392 353 LKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-IDLGELL-ISSD 424 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~-~~la~l~-~~~~ 424 (1088)
+..|+...|.+.+...+-.. |. ..-+++.+|.++...|.- ...++...++...+....+ ..||.-+ ..|
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG- 444 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMG- 444 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcc-
Confidence 35678888888877766442 11 134788888888877765 7778877776654332211 1122212 222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
..-...|++....+..........+-..+|.+....++.+.-..++.-+.+.
T Consensus 445 -Sa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ET--------------------------- 496 (929)
T KOG2062|consen 445 -SANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQET--------------------------- 496 (929)
T ss_pred -cccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhh---------------------------
Confidence 2223455555554433211111223344555555555443333344333321
Q ss_pred hhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-cCC-cHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQD-YVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~-~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
......--..+|..+...|+.++|..+.++++.- +|- .....+.++..|.-.|+..--..++
T Consensus 497 ----------------QHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 497 ----------------QHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred ----------------hHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Confidence 1112233334555666667777888887777652 222 1234556677777777765544444
Q ss_pred HHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH-HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHH
Q 001392 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1088)
Q Consensus 583 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~-a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1088)
.-++.-..++..-...++.-+.-..+.+.-..+..-+.+.+..+-.| +-+.||-. + .. .-...|+
T Consensus 561 h~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIa-C-AG------------tG~~eAi 626 (929)
T KOG2062|consen 561 HVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIA-C-AG------------TGLKEAI 626 (929)
T ss_pred cccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhh-h-cC------------CCcHHHH
Confidence 44333222333322222322333345555555555444444433333 34455533 2 22 2245677
Q ss_pred HHHHHHHhcCCCCH---HHHhhHHHHHHhcC-----CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001392 662 ELYTRVIVQHTSNL---YAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1088)
Q Consensus 662 ~~~~~al~~~p~~~---~a~~~la~~l~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (1088)
.+++-+.. +|.+. -|+..+|.+++++. ++..-.+.|.+++.. .+.++...+|-++.
T Consensus 627 ~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d-------KhEd~~aK~GAilA 690 (929)
T KOG2062|consen 627 NLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND-------KHEDGMAKFGAILA 690 (929)
T ss_pred HHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh-------hhhHHHHHHHHHHH
Confidence 77777666 66532 35556666666553 333334444444432 24555666665543
No 265
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=2.4 Score=56.36 Aligned_cols=378 Identities=12% Similarity=0.040 Sum_probs=205.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.++.+-++.+.|..|..+++.-.............++.+-.+|...++++.-......-. ..+ .+.......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~----sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADP----SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCc----cHHHHHHHH
Confidence 677888899999999999988521111112223445555568989999888776665321 112 244556667
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALD 430 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~--~~~~~~~A~~ 430 (1088)
...|++..|..+|+++++..|+....+...-......+.+...+...+-.....+....-|+.++.-- ..++++.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 78899999999999999999998877777777777888888888877776666666666666666533 6666655444
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE-----SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1088)
++. . +......+. .+|.+.....+-+ ..++..+..+-..-...-.++ +........+.....
T Consensus 1540 ~l~--~------~n~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~----Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1540 YLS--D------RNIEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEG----SYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhh--c------ccccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccc----hHHHHHHHHHHHHHH
Confidence 322 0 000000111 0344333332211 111211111110000000000 000001111111000
Q ss_pred hhhhhh-ccC--CCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHH-H--HcC----CcHHHHHHHHHHHHHcCCh
Q 001392 506 QLFHRF-END--GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL-F--KYQ----DYVDAYLRLAAIAKARNNL 575 (1088)
Q Consensus 506 ~~~~~~-~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~--~~p----~~~~~~~~la~~~~~~g~~ 575 (1088)
.-++.+ ... .........+..-|.+....-....+..+-+-.+++.+ . .+| ....+|+..|.+....|.+
T Consensus 1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 000000 000 00000111111222222222111122333333333332 2 233 3478999999999999999
Q ss_pred HHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCC---------ChH-------HHHHhhhHHH
Q 001392 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK---------DSY-------ATLSLGNWNY 639 (1088)
Q Consensus 576 ~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------d~~-------a~~~lg~~~y 639 (1088)
+.|...+-.+.+.. -+.+....+..++..|+...|+..++..+..+-.. ... +.+.++.+
T Consensus 1687 q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~-- 1762 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKY-- 1762 (2382)
T ss_pred HHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHH--
Confidence 99999998887766 56788899999999999999999999999644221 111 12222211
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Q 001392 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684 (1088)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 684 (1088)
..... .-....-+.+|..+.+..|.....++.+|..
T Consensus 1763 ~~es~---------n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1763 LEESG---------NFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred HHHhc---------chhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 11100 0234455678899999998655555555533
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.072 Score=55.42 Aligned_cols=133 Identities=17% Similarity=0.083 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...-+..+......|++.+|...|..++...|.+..+.+.+|.++...|+.+.|..++...-.................+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455666777777888888888888888888877788888888888888777777766543322222111000011222
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
.+.....+. ..+++.+..+|++..+-+.++..+...|+ .+.|+..+-..++.+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d 266 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRD 266 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhc
Confidence 222222211 22344445566666666666666666666 666666666555554
No 267
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.036 Score=57.98 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHH
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~ 792 (1088)
..|-.-|+-|++.++|..|+..|.+.|+.--..++ ...|.+-+-|.+..|+|..|+.-..+++.++|.+.-.++.-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34445577888888888888888888887333333 5556677888888888888888888888888888887777777
Q ss_pred H
Q 001392 793 A 793 (1088)
Q Consensus 793 ~ 793 (1088)
|
T Consensus 162 c 162 (390)
T KOG0551|consen 162 C 162 (390)
T ss_pred H
Confidence 6
No 268
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.99 E-value=0.0017 Score=44.40 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
.+++.+|.+++..|++++|+++|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777764
No 269
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.99 E-value=0.019 Score=64.05 Aligned_cols=175 Identities=19% Similarity=0.210 Sum_probs=120.7
Q ss_pred ChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001392 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1088)
Q Consensus 25 ~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~--y~~~g~~~~~ 102 (1088)
||..|+.+|..-|--.+..++++.++..+|+...|..++++|+-. | ++. ++.....+ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 899999999999999999999999999999999999999998621 1 000 00000000 00011100
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCC
Q 001392 103 QREKEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (1088)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~---~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a-~~~la~~~~~~g~ 177 (1088)
+--..+.|- .+++.....+.++|-+..|+++++-.+.++|. ++.. ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 000012222 34556678888999999999999999999998 6654 4444555677788
Q ss_pred hHHHHHHHHHHHHhCC-C---ChhHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 001392 178 YSDSLEFYKRALQVHP-S---CPGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p-~---~~~~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1088)
|+--+.+++....... + ..+...+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888888887655211 1 1245678889999999888 7888888888887664
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.077 Score=51.61 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
.+...++..+...|++++|...++.++....+..-...+-..++.+++..|.++.|+..+...... .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 345556777777777777777777776432222223344566777777788888777777655321 1123345567778
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 386 YVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
+...|+..+|+..|.+++...+..
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 888888888888888877776443
No 271
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=3.1 Score=55.44 Aligned_cols=363 Identities=13% Similarity=0.076 Sum_probs=198.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHH-HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001392 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERI-AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1088)
Q Consensus 45 ~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 123 (1088)
++|.+-++.|.|..|+..+++-...+. ..... ..+..|-.+|..++..... .-... ....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDgV-----------~Gv~~-~r~a 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDGV-----------EGVSA-RRFA 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcchh-----------hhHHH-Hhhc
Confidence 678888999999999999998421111 11222 2334444466666655421 11111 0122
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+| .+..........|++..|..+|+++++.+|++...+.+.-...+..|.+...+...+-.....++........-
T Consensus 1449 ~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1449 DP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLG 1524 (2382)
T ss_pred Cc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHH
Confidence 33 45666777778899999999999999999999989998888999999999998877776665555533333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHH--hHHHHHHHHHHHHHhCC--------CCHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA--GIRKGMEKMQRAFEIYP--------YCAMALNY 273 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~--~~~~Al~~~~~al~~~p--------~~~~~~~~ 273 (1088)
-.+-|++++++.-..... ..+-.+..+.. +|.+.+.....+ ...+.+...+..+ +.| .....+..
T Consensus 1525 ~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~ 1599 (2382)
T KOG0890|consen 1525 VEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEI 1599 (2382)
T ss_pred HHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHH
Confidence 345588888887665544 12222233321 444444332211 1112222222111 111 00011111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCCchhhHhh
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPHEFIFPYYG 347 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~ 347 (1088)
+..+... -+. ....+........ .......|.+....-....+..+-+-.+++++-.. .........|+.
T Consensus 1600 ~~kLH~l-~el---~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1600 LMKLHLL-LEL---ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHHH-HHH---HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 1111100 000 0011111111111 11112222222222112222333344444443322 123456678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC----------C------H
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PR----------D------A 410 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~----------~------~ 410 (1088)
.|++....|+++.|..++-++.+.. -+.+....|..+...|+-..|+.++++.+..+ |+ . .
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~ 1753 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFK 1753 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhh
Confidence 9999999999999999888887765 56788888999999999999999999998654 22 1 1
Q ss_pred HHHHHHHHHH-hcCCH--HHHHHHHHHHHHHHHh
Q 001392 411 QAFIDLGELL-ISSDT--GAALDAFKTARTLLKK 441 (1088)
Q Consensus 411 ~~~~~la~l~-~~~~~--~~A~~~~~~a~~~~~~ 441 (1088)
.+.+.++... ..++. ..-+++|..+..+.+.
T Consensus 1754 ~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1754 KAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 2233333333 44442 3445666677666654
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.88 E-value=0.002 Score=44.11 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
.+++.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.051 Score=52.82 Aligned_cols=103 Identities=21% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1088)
.+...++..++..|+++.|+..+..++..+......+.+-..++++...+|.+++|+..+..... ...........
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHh
Confidence 34556778888889999999999888876666666677888999999999999999998876542 22233446678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1088)
|.++...|+-.+|+..|.+++...+..
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999999987544
No 274
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.80 E-value=2.5 Score=52.90 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001392 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1088)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 123 (1088)
+.+-.++.....|+.|+..+.++..+ ||+- .+--.+.+.+|...+..+....+ ...|.+|+..|+++..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRES-----FPGR-KEGYEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLHG- 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhc-----CCCc-ccchHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhcC-
Confidence 34446677888899999999997655 4432 24456777788777766655432 2678999999998754
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-----RYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-----~~~~Al~~~~~al~~~p~~ 195 (1088)
.|.-|.-|+++|.+|-..|+|++-+++|..+++..|++|..-...-.+.++.. +-..|+...--++..-|..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 47788899999999999999999999999999999998876555555444432 2344555555556666665
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.79 E-value=0.0022 Score=43.89 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666654
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.77 E-value=0.0031 Score=43.08 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
.+|+.+|.+++..|++++|+..|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345555666666666666666666666655543
No 277
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.043 Score=57.44 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+..+-.-|+-|++..+|..|+.+|...|+..-. |...|..+|.+.+..|+|..|+.-+.+++..+|.. .-+++.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhh
Confidence 345566789999999999999999999887433 35678888999999999999999999999999998 6678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+.|++.+.++..|..+.+..+.++-
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999888877654
No 278
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=2.1 Score=50.92 Aligned_cols=262 Identities=12% Similarity=0.028 Sum_probs=132.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---HcCCHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKAR 217 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~---~~g~~~~A~ 217 (1088)
.|.-++=+..++.-+.+++.+......+..++...|++.+-...-..+..+.|.+ +.+|.....-.. ..+....+.
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccCcchhHHH
Confidence 3344444555555555566666666666666666666666555555555555555 344433332222 124445555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001392 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1088)
..|++++. +-+++..|...+......++ .+...+++.....+|.+++..
T Consensus 171 ~~~ekal~-dy~~v~iw~e~~~y~~~~~~------------------------------~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 171 ELFEKALG-DYNSVPIWEEVVNYLVGFGN------------------------------VAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHhccc------------------------------cccccccchhhhHHHHHHHhh
Confidence 55555552 33444444444444443332 112234445555555555543
Q ss_pred cCCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh----hHhhHH---HHHHHcCCHHHHHHH--
Q 001392 298 TNHGPT----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF----PYYGLG---QVQLKLGDFRSALTN-- 364 (1088)
Q Consensus 298 ~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~la---~~~~~~g~~~~A~~~-- 364 (1088)
....-. ....+..+-..|...-..++-+.++...+.. |.... .+.... .......+++.|...
T Consensus 220 ~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~ 295 (881)
T KOG0128|consen 220 LGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLA 295 (881)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHH
Confidence 222111 1122333333344334445556666555531 11111 011111 111123344444443
Q ss_pred -----HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 001392 365 -----FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTART 437 (1088)
Q Consensus 365 -----~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~--~~~~~~~A~~~~~~a~~ 437 (1088)
++..+...|.....|..+.......|....-...+++++.-.+.+...|+..+... ..+-...+...+.++++
T Consensus 296 ~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R 375 (881)
T KOG0128|consen 296 KILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR 375 (881)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc
Confidence 33344444444556667777777888888888889999888888888998888776 44444445555554444
Q ss_pred H
Q 001392 438 L 438 (1088)
Q Consensus 438 ~ 438 (1088)
.
T Consensus 376 ~ 376 (881)
T KOG0128|consen 376 S 376 (881)
T ss_pred C
Confidence 3
No 279
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=2.1 Score=50.87 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHH
Q 001392 655 THLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~-p~~~~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 732 (1088)
..+..|..+|....... -.....+...|.+.+ .+++.+.++.+.+.+.....+ .....|+....+-...|+...
T Consensus 440 ~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~ 515 (881)
T KOG0128|consen 440 AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPS 515 (881)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchh
Confidence 66778888887766642 122334555566665 467899999999888775431 223378888888888899999
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHH
Q 001392 733 AMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKS 772 (1088)
Q Consensus 733 Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~ 772 (1088)
|..++..|+..-..+.+ -.++...-+.-...|.++.....
T Consensus 516 ~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 516 ARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 99999999886444443 34444444555555666655443
No 280
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.3 Score=49.71 Aligned_cols=146 Identities=11% Similarity=0.002 Sum_probs=67.2
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-cCC-----hHHHHHHHHHHHHHCCCChhHHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RNN-----LQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~-----~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
+..+|...--+....+.++.-+.+...+++.+--+-.+|...-.+... .|- .+.-+.+....+.+.|++..+|.
T Consensus 146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWn 225 (318)
T KOG0530|consen 146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWN 225 (318)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHH
Confidence 344444444444444555555555555555444333444332222111 111 22234555666666777777777
Q ss_pred hhhhhhhc-cc--chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH-hcCCC
Q 001392 598 MLGDLELK-ND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHTS 673 (1088)
Q Consensus 598 ~l~~~~~~-~g--~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~ 673 (1088)
.|.-++.. .| ....-.......+...+...++.+.-+..+ |...+...+.+.+. -..+|..+|+.+- +.+|-
T Consensus 226 YL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~~---~a~~a~~ly~~La~~~Dpi 301 (318)
T KOG0530|consen 226 YLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAEE---LARKAVKLYEDLAIKVDPI 301 (318)
T ss_pred HHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccchH---HHHHHHHHHHHHhhccCcH
Confidence 66666553 33 122233333333323344456666666666 52222222211111 1223777776655 56664
No 281
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.68 E-value=0.11 Score=57.38 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHH
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1088)
+.-+.+|++|++.+|.+ ..+++.+-.+..+....+....-|++++..+|++...|..........-..-.+......|.
T Consensus 48 E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45677888888888877 66677777777777788888888888888888888777665544333211111455555555
Q ss_pred HHHH
Q 001392 259 RAFE 262 (1088)
Q Consensus 259 ~al~ 262 (1088)
+++.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 5554
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=1.9 Score=49.82 Aligned_cols=267 Identities=15% Similarity=0.097 Sum_probs=146.5
Q ss_pred EEEeCCCCCCChHHHHHHHH--------hccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHH
Q 001392 15 VRVALDQLPRDASDILDILK--------AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAIL 86 (1088)
Q Consensus 15 v~i~~~~lp~~~~~l~~~L~--------~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~ 86 (1088)
|.+-+..|. |+..|++.+. +..+.+..|-.+|..-...-.++-|...|-+.-+ |++. .+.
T Consensus 660 i~~~ikslr-D~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d------Y~Gi-----k~v 727 (1189)
T KOG2041|consen 660 IEVMIKSLR-DVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD------YAGI-----KLV 727 (1189)
T ss_pred EEEEehhhh-hHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc------ccch-----hHH
Confidence 333334444 4555554443 2345677999999887777777777777666422 3332 233
Q ss_pred HHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 001392 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPA 164 (1088)
Q Consensus 87 ~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a 164 (1088)
-.|+.++...-+.. ...---|.|++|.+.|-.+.+.| ....++...|+|-.-.++++.--.-+ ..-..+
T Consensus 728 krl~~i~s~~~q~a-ei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A 798 (1189)
T KOG2041|consen 728 KRLRTIHSKEQQRA-EISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDA 798 (1189)
T ss_pred HHhhhhhhHHHHhH-hHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHH
Confidence 33444433221110 00112356678888887665443 12344566777766665554321111 112467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+..+|..+..+..+.+|.++|.+.- -.-++..|++++..|++- +.....-|++...+-.+|.++...
T Consensus 799 ~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 799 FRNIGETFAEMMEWEEAAKYYSYCG---------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhh
Confidence 8888888888888999888887642 123466788888777653 334445677777777888888887
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1088)
|. -++|++.|-+. ..|... .......+++.+|..+..+.. -|.........+.-+...++.-+|
T Consensus 866 GM---C~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~ea 929 (1189)
T KOG2041|consen 866 GM---CDQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEA 929 (1189)
T ss_pred ch---HHHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHH
Confidence 77 67777766542 122211 122344455666666555432 111112222223334455566666
Q ss_pred HHHHHHH
Q 001392 325 GLYYMAS 331 (1088)
Q Consensus 325 ~~~~~~a 331 (1088)
++.++++
T Consensus 930 Ie~~Rka 936 (1189)
T KOG2041|consen 930 IEKDRKA 936 (1189)
T ss_pred HHHhhhc
Confidence 6665554
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.1 Score=54.43 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HH-
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LA- 238 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la- 238 (1088)
....-+..+.-....|++.+|...|..++...|.+ ..+.+.++.||...|+.+.|...+...-..... ..+.. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHH
Confidence 44566777788899999999999999999999999 788999999999999999999888763222111 11222 11
Q ss_pred -HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 001392 239 -VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1088)
Q Consensus 239 -~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 317 (1088)
.++..... .. -+..+.+.+..+|++..+.+.++..+...|+.+.|...+-.++.... ...+......+..++..
T Consensus 210 i~ll~qaa~---~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 210 IELLEQAAA---TP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHhc---CC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccCcHHHHHHHHHHHh
Confidence 22222211 11 12346667778999999999999999999999888888777775421 12223444444444444
Q ss_pred cC
Q 001392 318 KG 319 (1088)
Q Consensus 318 ~g 319 (1088)
.|
T Consensus 285 ~g 286 (304)
T COG3118 285 FG 286 (304)
T ss_pred cC
Confidence 44
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.59 E-value=1.6 Score=48.13 Aligned_cols=120 Identities=12% Similarity=0.009 Sum_probs=62.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
+..|+.-.|-.-+..++...|..+......+.+....|+ |+.+...+..+-..-.....+...+....+..|.+..|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~---ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY---YEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh---HHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344555555555555666666666555555555555555 55555555444333333333444444555555666666
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
..+...++... -..+++...-+-.....|-++++..++++.+.
T Consensus 377 ~s~a~~~l~~e---ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 377 LSTAEMMLSNE---IEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHhccc---cCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 66555555321 22223333333444445556666666666554
No 285
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.50 E-value=0.26 Score=54.04 Aligned_cols=172 Identities=19% Similarity=0.122 Sum_probs=119.4
Q ss_pred hcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCCChhHHHhhhhhhhc----ccc
Q 001392 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 608 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~----~g~ 608 (1088)
..+.+..|...+..+-.. ....+...++.++... .+..+|..+|..+ ....++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccC
Confidence 446777777777776552 2236777777777654 4678899999844 445678888999999877 448
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc
Q 001392 609 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1088)
Q Consensus 609 ~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~ 688 (1088)
..+|..+|.++...+...-..+...++.+ |.... .. ..-......|+..|.++.... ++.+...+|.+|..-
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QA----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hh----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999988654224446677777 65541 00 000134457888888887766 667777888777653
Q ss_pred ----CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHcc
Q 001392 689 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (1088)
Q Consensus 689 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 728 (1088)
.++.+|..+|.++.+.. + +..+++++ +++..|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 37788888888888865 3 67777888 666656
No 286
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.48 E-value=2.1 Score=53.55 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
.-.++...+.|+.|+..|.+.....+......++.+..|.....+ | .+.+|+.-|.+.. ..+..+.-|.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 556 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEYL 556 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHHH
Confidence 345677778889999999988877766666677888888776543 2 4778888887765 5677777799
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1088)
+.|.+|...|++++-+++|.-+++.+|.+|..-..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 99999999999999999999999999988754433
No 287
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.31 E-value=0.04 Score=49.82 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHcc---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhH
Q 001392 713 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g---~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
.....++++|++.... +..+.|.+++..++..+....-..+|+|+..+++.|+|+.++++....++..|+|..+.--
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 5678899999998764 5678899999999742223337889999999999999999999999999999999876544
Q ss_pred HHHHHHHHHH
Q 001392 790 AGVAMQKFSA 799 (1088)
Q Consensus 790 la~~~~~~~~ 799 (1088)
--.+..++..
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 4444444433
No 288
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.28 E-value=0.15 Score=57.02 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=110.1
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 001392 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 169 (1088)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~a~~~la 169 (1088)
..++.+|.+..+++.++.++..+|++..|..++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999998888887531 11 12 24567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 001392 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1088)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1088)
..+.++|-+..|+++++-++.++|. ++-.+++.+-....+.++++--+..++........ -+...+..+..++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 8888999999999999999999998 77777888888888889998888877766552111 12344555555555
Q ss_pred hchH------------HhHHHHHHHHHHHHHhCCCCH
Q 001392 244 ANEA------------AGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 244 ~~~~------------~~~~~Al~~~~~al~~~p~~~ 268 (1088)
.++. ...+.|-..+.+|+...|.-.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5541 113677888888888776443
No 289
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.25 E-value=0.2 Score=48.15 Aligned_cols=125 Identities=21% Similarity=0.198 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001392 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1088)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1088)
...|......|+...++..+.+++.....+.-..... ..-.......+... ...++..++..+..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~ 74 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL------YLDALERLAEALLE 74 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 3445666778888999999999887553221111000 01111112222222 34567778888999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-CCCCCH
Q 001392 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GEEVPI 448 (1088)
Q Consensus 389 ~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-~~~~~~ 448 (1088)
.|+++.|+..+.+++..+|.+..++..+..++ ..|+...|+..|.++...+... +..+.+
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 99999999999999999999999999999999 9999999999999998887753 444443
No 290
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.095 Score=50.49 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 224 (1088)
++..++..+...|++..|+..+++++..+|-+ ..++..+..+|...|+...|+..|.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34445555556666666666666666666666 5556666666666666666666665543
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.14 E-value=0.0029 Score=66.32 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=78.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
.+.-.+..|.++.|+..|..++.++|.+...+..++.+++.+++...|+.-|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556677888889999988888888888888888888888888889999998888888888 55567788888888888
Q ss_pred HHHHHHHHHHHhhCC
Q 001392 214 GKARQAFQRALQLDP 228 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p 228 (1088)
.+|...|..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 888888888888764
No 292
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.12 E-value=0.6 Score=47.53 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=76.6
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh--h
Q 001392 529 FNLARLLEQIHDTVAASVLYRLILFKYQ------------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP--N 594 (1088)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--~ 594 (1088)
..+|.+|...|.+..-.++++++-..+. .....|..-..+|..+.+...-..+|.+++.+...-| .
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3577788888888777777776654322 1245666667788888888888888999988764333 2
Q ss_pred ----HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCC------hHHHHHhhhHHHHHH
Q 001392 595 ----ALSMLGDLELKNDDWVKAKETFRAASDATDGKD------SYATLSLGNWNYFAA 642 (1088)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d------~~a~~~lg~~~y~~~ 642 (1088)
+.-.-|.++++.|+|++|-..|-.+.+.++... ..-++-|+++ +...
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANM-LmkS 285 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM-LMKS 285 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHH-HHHc
Confidence 233456788999999999999999988765422 2234455555 4444
No 293
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.04 E-value=0.96 Score=49.49 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 178 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~ 178 (1088)
..++..|...+..+... .++...+.++.+|... .+..+|...|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 45666788888877652 3346677777777654 35788999998543 45578888888888877 4589
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhH
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1088)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++-... ++.+.+.+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 999999999988754431234667777776642 2336888888877665 777888888776553 323458
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
.+|+.+|.++-.... ...++.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 888888888887766 66666666 555555
No 294
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.01 E-value=0.041 Score=48.37 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCC
Q 001392 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1088)
Q Consensus 46 la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 125 (1088)
.|..|+.+|+.-.|+++++..+..-... . ....++..-|.++..++....+...|...+--|+.+|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5789999999999999999976432110 0 112456666777777777666667777788888888888888888
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1088)
..+..++.+|.-+-..--|++++.-.++++..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888887777667778888777777764
No 295
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=4.6 Score=47.40 Aligned_cols=252 Identities=11% Similarity=-0.008 Sum_probs=124.3
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHcCChHH-HHHHHHHHHHHCCCChh--HHHhh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA-YLRLAAIAKARNNLQL-SIELVNEALKVNGKYPN--ALSML 599 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~~-A~~~l~~al~~~p~~~~--~~~~l 599 (1088)
..-+++.+|.++...|.- ...++...++...+.+.. -..||.-+..+|--.+ -.+.++..+..+..-.. +-..+
T Consensus 396 EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred ccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 345778888888777764 778887777755433221 1233333444553322 22333343333322111 33344
Q ss_pred hhhhhcccchHHHHH-HHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC-CC-CHH
Q 001392 600 GDLELKNDDWVKAKE-TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS-NLY 676 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~-~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~-~~~ 676 (1088)
|.+.+.... .+|+. .+.-+.+.... ...--+.+|-. +... |+.+.|-.+.++++.-. |- -..
T Consensus 474 Gl~mlGt~~-~eaiedm~~Ya~ETQHe-ki~RGl~vGia-L~~y------------grqe~Ad~lI~el~~dkdpilR~~ 538 (929)
T KOG2062|consen 474 GLLMLGTAN-QEAIEDMLTYAQETQHE-KIIRGLAVGIA-LVVY------------GRQEDADPLIKELLRDKDPILRYG 538 (929)
T ss_pred hhHhhCcCc-HHHHHHHHHHhhhhhHH-HHHHHHHHhHH-HHHh------------hhhhhhHHHHHHHhcCCchhhhhh
Confidence 544443333 23333 22222111111 11111223333 3333 67778888888877643 21 112
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
-.+.++..|+-.|+...-..++.-++. +++ ++..-.-.+|..+.-..+++.-....+-..+.|...-...+-..|
T Consensus 539 Gm~t~alAy~GTgnnkair~lLh~aVs-D~n----DDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 539 GMYTLALAYVGTGNNKAIRRLLHVAVS-DVN----DDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred hHHHHHHHHhccCchhhHHHhhccccc-ccc----hHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHH
Confidence 345667778878877655444444333 221 233333333333333456666666655444432111113344567
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCC---hhHHhHHHHHHHHHHH
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQKFSA 799 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~nla~~~~~~~~ 799 (1088)
|.+|.-.|. .+|+..++-+.. +|.+ ..+...+|+++-++..
T Consensus 614 GIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 614 GIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred hhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhccc
Confidence 777777776 678888887766 6654 3455666666544433
No 296
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.95 E-value=0.59 Score=51.63 Aligned_cols=142 Identities=15% Similarity=0.051 Sum_probs=108.7
Q ss_pred CCCCchhhHhhHHHHHHHcC------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 337 KPHEFIFPYYGLGQVQLKLG------------DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1088)
Q Consensus 337 ~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~ 404 (1088)
.+|..+.+|..++...-..- -.+.-+.+|+++++.+|++...+..+..+..+....+.....+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555555555544433322 145667899999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHH-h---cCCHHHHHHHHHHHHHHHHhcCCCC-------------CHHHHHHHHHHHHHcCCHHHH
Q 001392 405 IDPRDAQAFIDLGELL-I---SSDTGAALDAFKTARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESA 467 (1088)
Q Consensus 405 ~~p~~~~~~~~la~l~-~---~~~~~~A~~~~~~a~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A 467 (1088)
.+|+++..|....... . .-.+......|.+++..+....... -..++..+.......|..+.|
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 9999999998877765 2 2357888899998888876643221 135566677788899999999
Q ss_pred HHHHHHHHhcc
Q 001392 468 HQSFKDALGDG 478 (1088)
Q Consensus 468 ~~~l~~al~~~ 478 (1088)
+..++-.++.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 99999999853
No 297
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.90 E-value=0.54 Score=47.83 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHH-hcCC
Q 001392 356 GDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKID-----PRD-AQAFIDLGELL-ISSD 424 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-----p~~-~~~~~~la~l~-~~~~ 424 (1088)
..+++|+..|++++++.+.-. .++..+..++++++++++-...|.+++..- .+. ......+-... ...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 467778888888887766543 466677778888888888887777766431 111 11222222222 3444
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhh
Q 001392 425 TGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1088)
..--..+|+..+..+..... .........+|.+|+..|.|..-..++++....+....--
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe------------------- 181 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE------------------- 181 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc-------------------
Confidence 44445566666555554321 1122344568999999999999888888876643211000
Q ss_pred hhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc--HHHH----HHHHHHHHHcCChHH
Q 001392 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDAY----LRLAAIAKARNNLQL 577 (1088)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~----~~la~~~~~~g~~~~ 577 (1088)
...........++..-..+|..+.+-..-..+|.+++.+.... +... -.=|.++.+.|.+++
T Consensus 182 ------------dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 182 ------------DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEK 249 (440)
T ss_pred ------------hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHH
Confidence 0000112234455556778888888888889999998754332 1111 122455778899999
Q ss_pred HHHHHHHHHHHCCCC-----hh--HHHhhhhhhhccc
Q 001392 578 SIELVNEALKVNGKY-----PN--ALSMLGDLELKND 607 (1088)
Q Consensus 578 A~~~l~~al~~~p~~-----~~--~~~~l~~~~~~~g 607 (1088)
|..-|-++++..... .. -+..+++++++.|
T Consensus 250 AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 250 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 998888888765322 22 3445667766665
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.89 E-value=0.012 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 753 l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
++.+|+++...|++++|+.+|++++..+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444444444444444444444444443
No 299
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.87 E-value=0.0046 Score=64.88 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
+|.++.|+..|..++.++|.....+..++.+++..++...|++-|..++.++|+...-+-..+.....+|++.+|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 56677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC
Q 001392 187 RALQVHPSC 195 (1088)
Q Consensus 187 ~al~~~p~~ 195 (1088)
.+.+++-+.
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 999886443
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.80 E-value=0.02 Score=38.60 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 746 (1088)
++++++|.++..+|++++|+..|+.++..||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47899999999999999999999999999875
No 301
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=1.9 Score=44.42 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHH
Q 001392 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (1088)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1088)
.+-..++.+++..|.|.+|+......+..-. .....+...+++
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vh 168 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVH 168 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehh
Confidence 3445678889999999999998877765210 111345566677
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHH-----HcCCcHHHHH--HHHHHHHHcCChHHHHHHHHHHHHHC---CCChhHHHh
Q 001392 529 FNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVN---GKYPNALSM 598 (1088)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~--~la~~~~~~g~~~~A~~~l~~al~~~---p~~~~~~~~ 598 (1088)
..-..+|....+..++...+..+-. -+|....+-+ .-|...+.-.+|..|..+|-++++-. ..+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Confidence 7777888888888777776665543 2343333222 23445667778889999988887644 223333332
Q ss_pred hhhhhh---cccchHHHHHHHH--HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 001392 599 LGDLEL---KNDDWVKAKETFR--AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (1088)
Q Consensus 599 l~~~~~---~~g~~~~A~~~~~--~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 673 (1088)
+-.+++ ..+..++....+. ..++...+.+..++...+.. |-.. ...+|..|+.-|..-+..+|-
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea-~~NR----------sL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA-FGNR----------SLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH-hCCC----------cHhhHHHHHHHhhHHhccCHH
Confidence 222221 2233333222222 12222333344444444433 2211 116778888888777776654
No 302
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=3.4 Score=43.91 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCCchhh--
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFP-- 344 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~-- 344 (1088)
..++.+|+..++|.+|+.+...++. ..+..+...+.+..-..+|+...+..+|...+..+....+. .|....+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 4578889999999999998888774 23444555677778888899999999998888877642211 1111111
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHhCC---CcH---HHHHHHHHHHHhcCCHHHHHHHH--HHHHHhCCCCHHHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYP---DNC---ETLKALGHIYVQLGQIEKAQELL--RKAAKIDPRDAQAFIDL 416 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~---~~~~~la~~~~~~g~~~~A~~~~--~k~l~~~p~~~~~~~~l 416 (1088)
=..-|.++....+|..|..+|-.+++-+. +.+ .++..+..|-...+..++.-.++ +.+++....+..+...+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 12335556666899999999998887532 122 34444555555667766655544 34556666778888888
Q ss_pred HHHH---hcCCHHHHHHHHHHHH
Q 001392 417 GELL---ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 417 a~l~---~~~~~~~A~~~~~~a~ 436 (1088)
+..+ ...+|..|+.-|..-+
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHH
Confidence 8888 3446666666665443
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.74 E-value=0.015 Score=40.23 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
+|.+||.+|..+|+|++|+.+|+++|..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777776544
No 304
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.71 E-value=0.018 Score=39.20 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p 781 (1088)
.+++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455666666666666666666666666665
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.63 E-value=0.064 Score=40.64 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
..+++||.++++.|+|.+|+++.+.++++.|+|..+.--...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3578999999999999999999999999999998765444443
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=7.2 Score=46.66 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=133.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1088)
..+++.+..|.-|+.+...-- ........+....|..++..|++++|...|-+.+..+ .|..+. .-+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi------~kfLd 409 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEVI------KKFLD 409 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHHH------HHhcC
Confidence 445666677777776665432 1122335677788999999999999999999988532 122221 22233
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHhcCCHHHHHH
Q 001392 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF----IDLGELLISSDTGAALD 430 (1088)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~----~~la~l~~~~~~~~A~~ 430 (1088)
.....+-..+++.+.+..-.+..--..|-.+|.++++.++-.++..+ .+ ..... ..+-.++..+-.++|.-
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~-~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CD-KGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CC-CcceeeeHHHHHHHHHHhChHHHHHH
Confidence 34445555666666665555555666778899999998876555544 33 11111 11111113333333322
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1088)
... +.+. . ...+-.++...|+|++|+.++..+-
T Consensus 485 LA~-------k~~~--h---e~vl~ille~~~ny~eAl~yi~slp----------------------------------- 517 (933)
T KOG2114|consen 485 LAT-------KFKK--H---EWVLDILLEDLHNYEEALRYISSLP----------------------------------- 517 (933)
T ss_pred HHH-------Hhcc--C---HHHHHHHHHHhcCHHHHHHHHhcCC-----------------------------------
Confidence 222 1111 1 1223456677899999999986541
Q ss_pred hccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-cCCc-HH----HHHHHHHHHHHcCChHHHHHHHHH
Q 001392 511 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDY-VD----AYLRLAAIAKARNNLQLSIELVNE 584 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~-~~----~~~~la~~~~~~g~~~~A~~~l~~ 584 (1088)
.+.........|..+.. ..+++-..++-+.+.. ++.. .. .-..+-.+..-.+++..-..++..
T Consensus 518 ----------~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~ 586 (933)
T KOG2114|consen 518 ----------ISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLES 586 (933)
T ss_pred ----------HHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHH
Confidence 12233455556666655 3455555555444432 2111 00 001122233445677777777776
Q ss_pred HHHHCCCChh
Q 001392 585 ALKVNGKYPN 594 (1088)
Q Consensus 585 al~~~p~~~~ 594 (1088)
+....|+.++
T Consensus 587 ~~E~s~~s~e 596 (933)
T KOG2114|consen 587 MSEISPDSEE 596 (933)
T ss_pred HHhcCCCchh
Confidence 7777776655
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.53 E-value=0.18 Score=48.00 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..++....+-+..++.+++..++.-+--..|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3456666677777888888888888888888888888888888888888888888888887777776 666777888888
Q ss_pred HcCCHH
Q 001392 209 KLGQLG 214 (1088)
Q Consensus 209 ~~g~~~ 214 (1088)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 887764
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.48 E-value=0.025 Score=38.50 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 159 (1088)
+|+.+|.+|...|++++|+..|+++++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666665555
No 309
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=5.6 Score=45.30 Aligned_cols=252 Identities=17% Similarity=0.114 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1088)
....+.+.......|+++..+...+..+...|+.+.|+..++..+. ..........++.+|.++..+.+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555566666777888888888888888888887777777776664 111122234566777778888888888888877
Q ss_pred HHHhcCCCCCchhh-Hhh-HHHHHHH--------cCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 001392 331 SVKEINKPHEFIFP-YYG-LGQVQLK--------LGDFRSALTNFEKVL---EIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1088)
Q Consensus 331 al~~~~~~~~~~~~-~~~-la~~~~~--------~g~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1088)
..+. .+...+ |.. .|.+++. .|+-+.|..+++... ...|.+..+-.. -..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHH
Confidence 7652 122222 222 2233322 223333333333222 222222111000 0111111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHHH--HhcCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 001392 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTLL--KKAGEEVPI--EVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 398 ~~~k~l~~~p~~~~--~~~~la~l~---~~~~~~~A~~~~~~a~~~~--~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~ 468 (1088)
+-.+.- .++..+. .++.++.++ ......+.. ++.... +... ..+. -.+..+|.++..+|+...|.
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~ 469 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAP 469 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 111110 1111221 235555555 222222222 222222 2222 2223 33455799999999999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCC-HHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVL 547 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 547 (1088)
.+|...++.... ........+.++|.+|.++..+|. ..++..+
T Consensus 470 ~~f~i~~~~e~~------------------------------------~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~ 513 (546)
T KOG3783|consen 470 KCFKIQVEKESK------------------------------------RTEDLWAVPFALYELALLYWDLGGGLKEARAL 513 (546)
T ss_pred HHHHHHHHHHHh------------------------------------hccccccccHHHHHHHHHHHhcccChHHHHHH
Confidence 999988863110 001234467899999999999988 8999999
Q ss_pred HHHHHHHcCCc
Q 001392 548 YRLILFKYQDY 558 (1088)
Q Consensus 548 ~~~~l~~~p~~ 558 (1088)
+.++-....+|
T Consensus 514 L~kAr~~~~dY 524 (546)
T KOG3783|consen 514 LLKAREYASDY 524 (546)
T ss_pred HHHHHhhcccc
Confidence 99887766554
No 310
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=1.2 Score=50.55 Aligned_cols=158 Identities=19% Similarity=0.170 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhhc------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 001392 108 EHFILATQYYNKASRI------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------ 157 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~------------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------ 157 (1088)
.-|++|...|.-+... .|.+...++.++.++..+|+.+-|..+..++|-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3466777666666443 4677889999999999999988777777666531
Q ss_pred ---CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHcCCHHHHHHHHHHHH-----h
Q 001392 158 ---DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRAL-----Q 225 (1088)
Q Consensus 158 ---~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~ 225 (1088)
.|.|- .+++.....+-+.|-+..|+.+++-+++++|. +|-.+.+.+-....+..+|.--+..++..- .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 12232 34455556677889999999999999999998 655555556666667777777777766652 2
Q ss_pred hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
.-| |...-+.+|.+|+.......-..|...+.+|+...|.
T Consensus 412 ~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 334 3333455666666665544567788888888888874
No 311
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.01 E-value=0.29 Score=43.22 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 168 QACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
+|.-++..|++-+|+++.+.++..++++. +.++...|.++..+. ...+..+....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH----------
Confidence 35556677777777777777777666552 134444555554332 111111122111
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001392 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1088)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1088)
...+++.|.++..+.|..+..++.+|.-+-....|+++..-.++.+.
T Consensus 60 ----Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 60 ----LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred ----HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22344555566666666666666666665555566666666666554
No 312
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=5.3 Score=41.37 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhH-
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPY- 345 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~- 345 (1088)
..++.+++..|.|..|+.+....+. ..+..+.....+..-..+|+...+..++...+..+....+ -.|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567889999999999998887764 3345566667788888899999988888887776654221 112222222
Q ss_pred -hhHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHH---HHHHhcCCHHHHHHHHH--HHHH-hCCCCHHHHHH
Q 001392 346 -YGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKALG---HIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFID 415 (1088)
Q Consensus 346 -~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la---~~~~~~g~~~~A~~~~~--k~l~-~~p~~~~~~~~ 415 (1088)
..-|..++...+|..|..+|-.+++-.. .+..+...|- ..-...+..++...++. ..++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 2234556667789999999988887542 2333332222 22222344444433332 2222 23445667777
Q ss_pred HHHHH---hcCCHHHHHHHHHHH
Q 001392 416 LGELL---ISSDTGAALDAFKTA 435 (1088)
Q Consensus 416 la~l~---~~~~~~~A~~~~~~a 435 (1088)
.+..+ ...++..|+.-|..-
T Consensus 289 vaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHH
Confidence 77777 334566666655543
No 313
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=6 Score=45.08 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
...+.+.......|+++...+..+..+...|+.+.|+..+...+...-. ....++.+|.++....+|..|-..+..+.
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555556667888888888888888888888888888777651101 13456778888888888999988888888
Q ss_pred HhCCCChhHHHHHHHHHHH
Q 001392 190 QVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+..+.....+..|.||.
T Consensus 331 desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 331 DESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred hhhhhhHHHHHHHHHHHHh
Confidence 8777664443444455554
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.88 E-value=0.27 Score=50.36 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHHccCHHH-------HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001392 713 MPDVWINLAHVYFAQGNFAL-------AMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~-------Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p 781 (1088)
...++..+||+|..+|+... |+..|+.++.....+.. ..+++.+|.++++.|++++|+++|.+++....
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35677888899988888544 45555555544322221 67888999999999999999999999988654
Q ss_pred CC
Q 001392 782 SN 783 (1088)
Q Consensus 782 ~~ 783 (1088)
.+
T Consensus 197 ~s 198 (214)
T PF09986_consen 197 AS 198 (214)
T ss_pred CC
Confidence 43
No 315
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=1 Score=42.87 Aligned_cols=98 Identities=15% Similarity=0.043 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK-SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1088)
.+..+.+....|+...|...|..+-.....+... -.+...-+.++...|.|++.....+.... ..+|-...+.-.||
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~--d~n~mR~sArEALg 174 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG--DGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC--CCChhHHHHHHHHh
Confidence 3344555555555555555555554333222111 12233334445555555555444433321 13344444555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 001392 350 QVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
..-++.|++..|...|..+..
T Consensus 175 lAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccchHHHHHHHHHHHc
Confidence 666666666666666665544
No 316
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=6.8 Score=41.81 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=113.6
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCC-ch
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFE----IYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPT-KS 305 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~-~~ 305 (1088)
.+..+|...++ |.+|+......+. ++. .-..+...-...|+...+..+|...+..+....+. +|. .+
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 45667777776 8888877665543 232 23345555677888888888888777776644322 221 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh---hHhhHHHHHHHcCCHHHHHHH--HHHHHHhCCCcHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF---PYYGLGQVQLKLGDFRSALTN--FEKVLEIYPDNCETLK 380 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~--~~~~l~~~p~~~~~~~ 380 (1088)
..-..-|..+....+|..|..||-.+.+.+..-...+. ++-.+..+-+..+..++.-.. -..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 33344466777779999999999999985543333333 333344445556666654443 4456666666788888
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 381 ALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
..+.++.+. .+|..|+.-|..-+..+| .+...+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Ly 328 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLY 328 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHH
Confidence 888887654 478888888888776655 3444444444
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.76 E-value=0.38 Score=45.87 Aligned_cols=69 Identities=16% Similarity=0.015 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1088)
..+..++.-+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....|..+.+--.++.|++..|+..
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 378888888888899999999999999999999999999999999999999999999999999998754
No 318
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.75 E-value=0.27 Score=42.36 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHcCC
Q 001392 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1088)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~ 212 (1088)
+..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+|.. ...++-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345556666666666666666666666666666666666666666544 23344444444444444
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.53 E-value=0.16 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.046 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
.++.+|..+++.|+|.+|..+++.+++..|+|..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667777777777777777777777777777666555443
No 320
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.29 E-value=6.2 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=13.7
Q ss_pred hhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001392 679 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 679 ~~la~~l~~~g~~~~A~~~~~~~~~~~p 706 (1088)
+++-.+++.-|.+.+ |+++...+|
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHhcCH
Confidence 445555566666543 666666554
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=4.4 Score=38.82 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRY 208 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~~ 208 (1088)
.+.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+...|+..|..+-.-.|.. ....++.-+.++.
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3444455677777777777766554433 3455667777777777777777777776655433 1234566666677
Q ss_pred HcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 209 KLGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
..|-|+.-..-.+-.- ..+|--..+.-.||....+.|+ +..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 7777766554444321 1123334455566666666666 6666666666554
No 322
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=9.4 Score=43.77 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHHH------------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC----------------
Q 001392 538 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 589 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---------------- 589 (1088)
..-|++|...|.-+... +|-+++.++.++.++..+|+.+.|..++.+++-..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777666666553 45668899999999999999999888888776431
Q ss_pred -----CCChh---HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHH
Q 001392 590 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1088)
Q Consensus 590 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1088)
|.+-. +++.....+.+.|-|..|.++.+-++++.|..|+++...+.++ |...+ .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2333444556779999999999999999999999988888888 55441 5666666
Q ss_pred HHHHHH-----HhcCCCCHHHHhhHHHHHHhcCC---chHHHHHHHHHHHHhc
Q 001392 662 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 662 ~~~~~a-----l~~~p~~~~a~~~la~~l~~~g~---~~~A~~~~~~~~~~~p 706 (1088)
++++.. +..-|+..+. ..+|..|..... -..|...+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666554 3344554332 345666665554 5678888999988775
No 323
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.77 E-value=0.27 Score=50.85 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
++|..++|..+|..|+.++|.++.++...|...-..++.-+|-.+|-+++..+|.|..++..+++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34444556666666666666666666666655555555566666666666666665555555443
No 324
>PRK10941 hypothetical protein; Provisional
Probab=93.70 E-value=0.54 Score=49.84 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=68.8
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
..++-.+|...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..+...|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999998876655554
No 325
>PRK10941 hypothetical protein; Provisional
Probab=93.69 E-value=0.48 Score=50.23 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=29.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.+|...++++.|+.+.+.++...|+++.-+.-+|.+|.+.|.+..|+.-++..+...|++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 344444455555555555555555544444445555555555555555555555444444
No 326
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.61 E-value=0.11 Score=35.85 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~ 780 (1088)
++..||.+|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999966543
No 327
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.42 E-value=0.66 Score=40.02 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGR 177 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~ 177 (1088)
.+.-+.+.+..+|.+..+.+.+|..++..|++++|+..|-.++..+++. ..+.-.+-.++-..|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3566788889999999999999999999999999999999999988765 4444444444444444
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.38 E-value=2.1 Score=40.07 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
++......+..++.+++..++..+--+.|+.+..-..-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 44444455558888888888888888888888888888888999999999999998888777666 56667788888888
Q ss_pred CCHH
Q 001392 211 GQLG 214 (1088)
Q Consensus 211 g~~~ 214 (1088)
|+..
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7654
No 329
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.37 E-value=1.3 Score=40.51 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 161 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g---~~~~Al~~~~~al~-~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
.....+.+|.++.... +..+.+.+++.+++ -.|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3556777777777664 45677888888886 5666656667788888888889999988888888888888877554
Q ss_pred HHH
Q 001392 237 LAV 239 (1088)
Q Consensus 237 la~ 239 (1088)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 433
No 330
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.27 E-value=11 Score=39.88 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+.+-...|+..+...-+..-..+++++|.+..++..|+.-.... +.+|...|+++++...... ........
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~y----r~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIY----RQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHH----hhHHHHhh
Confidence 44566677777888888888889999999999998888654443 6777788887776532111 11111111
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
.|...+|. .+ .+......+-..++.+..++|+..+|++.+....+.++. .....++-++...+....-|..
T Consensus 259 ~~~~~da~------~r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQ------LR--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhh------hh--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 00 011122344556788888999999999999888763321 0111223344444444444444
Q ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHH-------------hcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 361 ALTNFEKVLEIY-PDNCETLKALGHIYV-------------QLGQ---IEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 361 A~~~~~~~l~~~-p~~~~~~~~la~~~~-------------~~g~---~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
....+-+.-.+. |.+....+.-+.+-. +.|- -..|++.+.++++.+|.-+..++.+-.
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 333333322221 333333322222111 1111 124666777777777777666655543
No 331
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.22 E-value=26 Score=42.73 Aligned_cols=213 Identities=10% Similarity=-0.064 Sum_probs=113.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-Hh
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LI 421 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l-~~ 421 (1088)
.++..-....+.+.|...+.+......-+. .++..++.-....+...+|...+..+.....+. ..+-....+ +.
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHHH
Confidence 334444566677888888887655443322 234444444444333567777777655332222 222222222 27
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001392 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1088)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1088)
.+++......+..+-.... ......+-+|..+...|+.++|..+|..+..... +...+.
T Consensus 325 ~~dw~~~~~~i~~L~~~~~-----~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~----------------fYG~LA 383 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAK-----EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRG----------------FYPMVA 383 (644)
T ss_pred ccCHHHHHHHHHhcCHhhc-----cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------------cHHHHH
Confidence 7888776666665422211 2467888899998889999999999999855211 111111
Q ss_pred hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001392 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1088)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1088)
...+..--.+....................+..+...|....|...+..++.. .+......++.+....|.++.++..
T Consensus 384 a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 384 AQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000000000000000000000112344566677778888888777776654 2345566677777777777777665
Q ss_pred HH
Q 001392 582 VN 583 (1088)
Q Consensus 582 l~ 583 (1088)
..
T Consensus 462 ~~ 463 (644)
T PRK11619 462 TI 463 (644)
T ss_pred Hh
Confidence 54
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.96 E-value=1.2 Score=45.69 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001392 423 SDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1088)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1088)
..++.|+..|.-|+-...-.+.... +.++..++++|...|+.+....++++|+....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~--------------------- 149 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYE--------------------- 149 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH---------------------
Confidence 3455555555555544332222221 56677788888888887666666666665211
Q ss_pred HhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH
Q 001392 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1088)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1088)
............-....+.+.+|.+..+.|++++|..+|.+++..
T Consensus 150 ---------~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 150 ---------EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred ---------HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 000000010112235678888999999999999999999988863
No 333
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=1.3 Score=51.64 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 001392 871 QQNRQRQEAARQAA 884 (1088)
Q Consensus 871 ~~~~~k~e~~r~~~ 884 (1088)
+++|.++|.+|+.+
T Consensus 357 kkererqEqErk~q 370 (1118)
T KOG1029|consen 357 KKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555543
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.88 E-value=0.57 Score=46.49 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
.++..+|.+|...|+++.|.+.|.++.............++.+.++....+++.....+..++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555666666666666665555544433344445555566666666666666655555544
No 335
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.87 E-value=0.33 Score=50.21 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=49.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.-..+.|+.++|..+|..++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33456677777777777777777777 6667777777777777777777777777777777777766553
No 336
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=23 Score=40.47 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=99.1
Q ss_pred CCCChHHHHHHHHhccCCHH--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHHH
Q 001392 22 LPRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTY 95 (1088)
Q Consensus 22 lp~~~~~l~~~L~~e~~~~~--~~~~la~~y~~~g~~~~a~~~l~~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~~ 95 (1088)
+.+|...+..+-....-+.. +-+-+...||..|.|++|+...-++-.. +...||-.-.+..+.++.....-.+.
T Consensus 39 Isddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~ 118 (926)
T COG5116 39 ISDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYI 118 (926)
T ss_pred hhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhh
Confidence 34444455555555555555 7778889999999999999987776431 11222211122333333333222222
Q ss_pred hchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 001392 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEF 173 (1088)
Q Consensus 96 ~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~ 173 (1088)
-|......... ..+++.+....-.+...-+.+|.... |.. +...+.+++...+. ...++.++....
T Consensus 119 ~~~~d~iD~~l-------~~v~e~i~~kc~~~se~~~~lgIa~e--g~r---ldiie~~l~~~~d~di~~ylL~Lait~v 186 (926)
T COG5116 119 GGDKDIIDRIL-------DFVLEVIGAKCVDDSEIGYLLGIAAE--GLR---LDIIEKYLSDGNDCDIINYLLDLAITLV 186 (926)
T ss_pred CCCcccchHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHH--HHH---HHHHHHHHhCCCcccHHHHHHHHHHHHh
Confidence 22211100111 11222222222222233333333322 111 23344444433222 234555555544
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
....+. -.++...+...|..+..-++.++.|+..+++-..|...+.+..+.+.
T Consensus 187 ~~~~fr--~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 187 EEEGFR--KEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hhHHHH--HHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 443333 24566666777766444477889999999999999999999877543
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.38 E-value=23 Score=40.08 Aligned_cols=208 Identities=13% Similarity=-0.025 Sum_probs=126.3
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1088)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l 419 (1088)
-+-..+..+..++.......-....+.+++... .+-.+++.++.+|... ..++-..+++++++.+-++...-..|+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 333445555566666666666677788888764 5677888899999888 55777788888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhh
Q 001392 420 LISSDTGAALDAFKTARTLLKK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498 (1088)
Q Consensus 420 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~ 498 (1088)
|...+...+..+|.+++..+-. .....--++|..+.. +-..+.+.-+....+....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~--------------------- 198 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTK--------------------- 198 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHh---------------------
Confidence 8668888888888888765322 111111123332221 1122333333333332221
Q ss_pred HHHhhhhhhhhhhccCCCCcCCCCcchHH-HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------
Q 001392 499 MLQFKDMQLFHRFENDGNHVELPWNKVTV-LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA------ 571 (1088)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 571 (1088)
.......+ +..+-.-|....++.+|+.++..+++.+..+..+.-.+..-+..
T Consensus 199 ---------------------lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~ 257 (711)
T COG1747 199 ---------------------LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHS 257 (711)
T ss_pred ---------------------hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccch
Confidence 11112222 22333556667788888888888887776665555544444333
Q ss_pred --------------cCChHHHHHHHHHHHHHCCCCh
Q 001392 572 --------------RNNLQLSIELVNEALKVNGKYP 593 (1088)
Q Consensus 572 --------------~g~~~~A~~~l~~al~~~p~~~ 593 (1088)
-.++..++.-|...+..+..+-
T Consensus 258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 4566677777777766665443
No 338
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=20 Score=39.35 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=66.5
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHH----cCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CC--CCh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQD--YVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG--KYP 593 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p--~~~ 593 (1088)
.+.+|+.+..+|...|+...-..++...+.. +.. -....+.|...|...+.++.|-.+..+..-- .. ...
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A 247 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence 5578888889999988876666666555542 111 2344556667777778888887777664311 11 122
Q ss_pred hHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 594 NALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
..++.+|.+-.-+++|..|.++|-.++...|.
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34556777777777888888888888777765
No 339
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.30 E-value=3.9 Score=36.44 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCC---CC----CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC----CCC----
Q 001392 685 LAEKGQFDVSKDLFTQVQEAASGSV---FV----QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD---- 749 (1088)
Q Consensus 685 l~~~g~~~~A~~~~~~~~~~~p~~~---~~----~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~----~~~---- 749 (1088)
....|.|.+|...++++.+.....+ .. -+.-++-.|+..+..+|+|++++..-..+|..|.. ..+
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 3455777777777777777653110 00 13446677788899999999999999999987743 333
Q ss_pred -HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 750 -AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 750 -~~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
..+.+.-+.++...|+.++|++.|+.+-++
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333446677888899999999999887654
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.23 E-value=1.5 Score=41.07 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1088)
.+..++.-+--+-|+.+..-+.-|.+++..|+|.+|+..|+.+....+..+.+.-.++.|++.+|+..
T Consensus 28 D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 28 DAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 77778887777889999999999999999999999999999999888888999999999999888753
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.18 E-value=0.24 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
+++.+|.++...|+++.|+..|..+++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555555666666666666666555555543
No 342
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.09 E-value=1.2 Score=44.14 Aligned_cols=104 Identities=10% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH----H
Q 001392 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA----Q 751 (1088)
Q Consensus 676 ~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~----~ 751 (1088)
.++..+|..|.+.|+++.|++.|.++++...++. ...++++++..+.+..|++.....+..++-.......+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 5678999999999999999999999988764321 357788999999999999999999999987765554442 3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~p 781 (1088)
+..+-|..+...++|..|-+.|-.+..-..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 344567777888999999988876655443
No 343
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.79 E-value=8.2 Score=34.52 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=67.0
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001392 412 AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV-------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1088)
Q Consensus 412 ~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~ 481 (1088)
+|..|+..- ..|-+++|...+.+++......+... +..++..|+..+..+|+|++++..-..++.--.+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 344444433 56778888888888887765543221 13556677888889999999888888877621111
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1088)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1088)
..+.... -..-+.+.++.+..+...|+.++|+..|+.+-+
T Consensus 89 GEL~qde--------------------------------GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 89 GELHQDE--------------------------------GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --TTSTH--------------------------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccc--------------------------------chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1110000 011345667788899999999999999987654
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.78 E-value=0.27 Score=32.18 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
.+|+++|.++..+|++..|+..|+.+++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34555666666666666666666655554
No 345
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.69 E-value=21 Score=38.04 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=65.1
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
...++..+..+|..|.+.|++.+|..+|-.. ++...... +.......| .|.....+..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~ 145 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKG---------------YPSEADLFIA 145 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHT---------------SS--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhc---------------CCcchhHHHH
Confidence 3458899999999999999999988877432 22222211 222222222 3333343333
Q ss_pred hh-hhhhcccchHHHHHHHHHhhhc----CCC--------CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 599 LG-DLELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 599 l~-~~~~~~g~~~~A~~~~~~al~~----~~~--------~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
.+ .-|+..++...|...+....+. .|. ...+.++....+ ...... +++ ...+..-.+.|.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e--~~~----~~~F~~L~~~Y~ 218 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCE--RDN----LPLFKKLCEKYK 218 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHH--HT-----HHHHHHHHHHTH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHh--cCc----HHHHHHHHHHhC
Confidence 33 3356667777777766655543 221 111222222222 121211 111 134555555566
Q ss_pred HHHhcCCCCHHHHhhHHHHHHh
Q 001392 666 RVIVQHTSNLYAANGAGVVLAE 687 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~ 687 (1088)
..|..+|........+|.+|..
T Consensus 219 ~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 219 PSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp H---HHHHTHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHHHHHCC
Confidence 6666666666666666666664
No 346
>PF13041 PPR_2: PPR repeat family
Probab=91.47 E-value=0.68 Score=34.78 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 761 (1088)
+..+|..+.+.|.+.|++++|.++|+++.+. +-.++..++..+..+++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 3567778888888888888888888888765 35677777777666654
No 347
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.44 E-value=15 Score=42.44 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEA-------------DRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
-|-.+|...+..=+++-|.+.|.++-.. .....+--..+|.++.-.|+|.+|.++|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3666666666666677777666654211 011112234556666667777777777764
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.29 E-value=0.85 Score=37.39 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=47.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 718 ~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
+.-|.-++.+.+..+|+..+.+++++.+.+++ ..++-+|..+|+..|++.+++.+...
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888999999999999999766666 67788999999999999998877544
No 349
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=91.16 E-value=27 Score=39.86 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 001392 753 LLYLARTHYE 762 (1088)
Q Consensus 753 l~~La~~~~~ 762 (1088)
+..|+..+..
T Consensus 123 l~~L~~~~~~ 132 (591)
T KOG2412|consen 123 LNKLGLKESA 132 (591)
T ss_pred HHHHHHhhcc
Confidence 3444444443
No 350
>PRK12798 chemotaxis protein; Reviewed
Probab=90.98 E-value=27 Score=38.94 Aligned_cols=176 Identities=15% Similarity=0.027 Sum_probs=116.0
Q ss_pred ChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC
Q 001392 592 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (1088)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 671 (1088)
+.+....-|..-+-.|+..++.+.+..+....-......++.|.....+.. .+..+|+.+|+.+--.-
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 344444555556667888888888876655443333444444433322233 67889999999998888
Q ss_pred CCCH--HHHhhH-HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC
Q 001392 672 TSNL--YAANGA-GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (1088)
Q Consensus 672 p~~~--~a~~~l-a~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~ 748 (1088)
|... .+.... ..+....|+.+++..+-.+....+..|+|..+- +..++..+...++-. -...+..++..+....
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F--~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQF--AQRFVDLVVRLDDEI-RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHH--HHHHHHHHHhccccc-cHHHHHHHHHhcCchh
Confidence 8843 344444 344468899999999999999988776665433 333333333333221 2233666777654444
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 749 ~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
...+|..+++.-.-.|+..-|.-.-.+++.+...
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~ 289 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP 289 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC
Confidence 4788999999999999999999999999998743
No 351
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.63 E-value=23 Score=37.66 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCChhHHh
Q 001392 768 DCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 768 ~A~~~l~~al~~~p~~~~~~~ 788 (1088)
.|++.+.++++.+|.-|....
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 588889999999998765443
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.42 E-value=51 Score=40.26 Aligned_cols=321 Identities=9% Similarity=-0.018 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1088)
..++.-|...++.|++..+..+....-+.... ..+-+..+..+... .....+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~--------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLY--------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcH--------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 46788899999999999998888875332111 11222221111111 011234445
Q ss_pred hhcCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 121 SRIDMHEPSTWVGKGQLL---LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
+..+|+.|.....+.... ...+++..-+.++ ...|.+.......+..+...|+-.+|.....++....... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 566677776655554433 2345565544422 2347777777778888888999888888777776554333 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHH-----------Hhh-chHHhHHHHHHHHHHHHHhC
Q 001392 198 AIRLGIGLCRYKLGQLGKARQAFQRAL-QLDPENVEALVALAVMD-----------LQA-NEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~-----------~~~-~~~~~~~~Al~~~~~al~~~ 264 (1088)
..+-.+-..+...|.+.... ++.++. .+.-++......+.... ... .+ .... ...+...
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~----~~~~~~~ 235 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTV----ETFARTT 235 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHH----HHHhhcc
Confidence 22232333333333322222 111111 11111111111111110 000 00 0111 1111111
Q ss_pred -CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc
Q 001392 265 -PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1088)
Q Consensus 265 -p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1088)
|... .....++..-+...+.+.|..++........-.+ ....+...+|......+...+|...+..+... ...
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----~~~ 311 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----SQS 311 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----cCC
Confidence 1111 1122223333455566777777776533221111 11233344444443433355666666654421 112
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
.........+.+..+++..+...+..+-..........+.+|..+...|+.++|..+|.++.
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22233333445577777777777766544334456777888888777888888888888764
No 353
>PF12854 PPR_1: PPR repeat
Probab=90.08 E-value=0.61 Score=31.70 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001392 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1088)
Q Consensus 38 ~~~~~~~~la~~y~~~g~~~~a~~~l~~a 66 (1088)
++.-.|..+...|++.|++++|.++|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45668999999999999999999999875
No 354
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.04 E-value=44 Score=38.98 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=16.1
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRL 550 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1088)
...+++-.|+.+....++++|.+.|.+
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 345566666666666666666655543
No 355
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=4.9 Score=46.15 Aligned_cols=127 Identities=23% Similarity=0.163 Sum_probs=96.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 001392 113 ATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-AL 189 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~--g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-al 189 (1088)
++..+...+.++|.++..++.. ...+...+....+.-.+...+..+|.++.+...++..+...|..-.++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555556666788888775554 66777778888999999999999999999999999988888777666666655 77
Q ss_pred HhCCCChhHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 190 QVHPSCPGAIR------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 190 ~~~p~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
...|.+ .... +.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777877 3322 3357778888888999999999999999886665554444
No 356
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.88 E-value=0.81 Score=51.12 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=64.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
.|.-.+..+.+..|+..|.+++...|.....+...|.++++. |+.-.|+.-...+++++|.. ..+++.++.++..+
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el 458 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNEL 458 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHH
Confidence 333344445566777777777777777777777777776665 45556666666777777766 55677777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 001392 211 GQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~ 230 (1088)
+++.+|+.....+....|.+
T Consensus 459 ~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hhHHHhhhhHHHHhhcCchh
Confidence 77777777766666666643
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.71 E-value=42 Score=38.20 Aligned_cols=97 Identities=14% Similarity=0.006 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|-+-..+..+..++.....+.-...++.+++....+- ..++.++.||... ..++-...|++.++.+-++...-..|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3444444555455544445555555666666654432 3456666776666 445556666666666666666656666
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
..|.. ++ ...+..+|.+++.
T Consensus 140 ~~yEk-ik---~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKYEK-IK---KSKAAEFFGKALY 159 (711)
T ss_pred HHHHH-hc---hhhHHHHHHHHHH
Confidence 55555 33 4556666666554
No 358
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.67 E-value=2.8 Score=48.99 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 001392 876 RQEAARQAAL 885 (1088)
Q Consensus 876 k~e~~r~~~~ 885 (1088)
|-|++|+.|+
T Consensus 352 reE~ekkere 361 (1118)
T KOG1029|consen 352 REEEEKKERE 361 (1118)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 359
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=28 Score=38.54 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA------------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 177 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~------------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~- 177 (1088)
..++.+=.+.+..+|....+|..+-.++.. +.-+++-+.+...++..+|++..+|..+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 367777778888889887777665433322 2245667788888999999999999999999988764
Q ss_pred -hHHHHHHHHHHHHhCCCChhHHHHHH---HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh------ch-
Q 001392 178 -YSDSLEFYKRALQVHPSCPGAIRLGI---GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 246 (1088)
Q Consensus 178 -~~~Al~~~~~al~~~p~~~~~~~~~l---g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 246 (1088)
+..=+.++.++++.+|.+--...+.. +..-.......+=+.+..+++.-++.|..+|.....+.... |+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 68889999999999998832222222 22222222355667788888888999999998877666522 21
Q ss_pred --HHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 247 --AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 247 --~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
..-...-+.....++-.+|.+..+|++
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 223556677788888889988887766
No 360
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.35 E-value=0.61 Score=48.54 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
-|+++..|...+.-....|.|.+--..|.+++..+|.|+..|.. -+.-++-.++++.+..+|.++++.+|.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 34555555555555455555555555555555555555555543 3333444455555555555555555544
No 361
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=14 Score=42.69 Aligned_cols=128 Identities=17% Similarity=0.063 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 001392 147 ASSAFKIVLEADRDNVPALLGQ--ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-A 223 (1088)
Q Consensus 147 A~~~~~~al~~~p~~~~a~~~l--a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-a 223 (1088)
++..+..-+..+|.++..++.. ...+...+....+.-.+..++..+|.. ...+..++......|..-.+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555555566788887765444 666677788889999999999999998 55677888887778777777666655 8
Q ss_pred HhhCCCCHHHHHHH------HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 224 LQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 224 l~~~p~~~~a~~~l------a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
....|.+......+ +......+. ..++...+.++....|.++.+...+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 88889888776655 555555555 67777788888888888877666555543
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.18 E-value=2.3 Score=37.13 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=43.0
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 686 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
...|++..|++.+.+..+......... ...+++++|.++...|++++|+..++.++.......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 356777777777777776654322111 23566777777888888888888888888776555553
No 363
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=89.12 E-value=2.1 Score=53.82 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.7
Q ss_pred HHHhcCCCC
Q 001392 1017 RLAAAGLED 1025 (1088)
Q Consensus 1017 ~~~~~~~~~ 1025 (1088)
.|-..|+.|
T Consensus 602 ~~~r~~~~~ 610 (1021)
T PTZ00266 602 DSMRSGVHD 610 (1021)
T ss_pred hhhhcccch
Confidence 444444433
No 364
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.04 E-value=0.97 Score=47.12 Aligned_cols=89 Identities=10% Similarity=0.163 Sum_probs=73.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001392 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1088)
|.++....|+++..|...+....+.|-|.+--.+|..++..+|.+ ..+|.. -+.-+...++++.++..|.+++..+|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 444455678889999998888888899999999999999999999 666655 555677789999999999999999999
Q ss_pred CHHHHHHHHHH
Q 001392 230 NVEALVALAVM 240 (1088)
Q Consensus 230 ~~~a~~~la~~ 240 (1088)
++..|...-.+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99888765543
No 365
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.97 E-value=0.77 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
.++.++|.+|..+|++.+|+.++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 466778888888888888888888877653
No 366
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.78 E-value=0.65 Score=46.37 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=34.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
....++.+.|.++|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555666666666666666655 4455666666666666666666666666666543
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.12 E-value=40 Score=35.93 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG--QACVEFNRGRYSDSLE 183 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~Al~ 183 (1088)
|..-...|+.+- +.-...-.+|..+...|..++..|++.+|...|-.. +++.+... +-
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll-------------- 128 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLL-------------- 128 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHH--------------
Confidence 444445555555 222222356777788888888888877777666432 11111111 11
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC----------CHHHHHHH--HHHHHhhchH
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEALVAL--AVMDLQANEA 247 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~~~l--a~~~~~~~~~ 247 (1088)
+.......|.............|..+++...|...+...++. +|+ ....+..+ -..-+..++.
T Consensus 129 -~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~ 207 (260)
T PF04190_consen 129 -EEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL 207 (260)
T ss_dssp -HHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H
T ss_pred -HHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH
Confidence 111122334442222333445566778888888877666655 332 22222111 1222223333
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
..+..-...|...++.+|.....+..+|..|+...
T Consensus 208 ~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 208 PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 33444445555555556666666666777666533
No 368
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.86 E-value=3.9 Score=51.52 Aligned_cols=173 Identities=21% Similarity=0.208 Sum_probs=123.9
Q ss_pred hhHHHHHHHcCCHHHHHH------HHHHH-HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCH
Q 001392 346 YGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDA 410 (1088)
Q Consensus 346 ~~la~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~--------~p~~~ 410 (1088)
...++.....|.+.+|.+ ++... ..++|.....+..++.++...++.++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 445666667777777776 55533 3457888899999999999999999999988877543 25566
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccc
Q 001392 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GE--EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (1088)
Q Consensus 411 ~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~ 486 (1088)
..+.+++... ..++...|+..+.++.....-. +. +....+..+++.++...++++.|+.+++.|+..... +..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~--v~g- 1092 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK--VLG- 1092 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh--hcC-
Confidence 7777787666 7778888999888888765432 22 223456688999999999999999999999873210 000
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1088)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1088)
...-.....+..+++++...+++..|....+....
T Consensus 1093 --------------------------------~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1093 --------------------------------PKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --------------------------------ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 01122455666778888888888888777666554
No 369
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=20 Score=39.46 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1088)
..|+.+..+|-..|+...-...|...+....-.+ .......+.++|-..|+..+. |+.|..+..+.
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh---d~e~qavLiN~LLr~yL~n~l-----------ydqa~~lvsK~ 235 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRH---DEEGQAVLINLLLRNYLHNKL-----------YDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC---cchhHHHHHHHHHHHHhhhHH-----------HHHHHHHhhcc
Confidence 3677777788888876666655555433222111 112344556666666655443 34666666665
Q ss_pred hhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 121 SRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 121 ~~~~----p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
.--+ ...+..++.+|.+..-+++|..|.++|-+++...|++
T Consensus 236 ~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 236 VYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4211 1234556777888888888888888888888888864
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.08 E-value=6.1 Score=32.58 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHH
Q 001392 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1088)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~a 260 (1088)
.+..|.-++...+..+|+..|.++++..++....+..||.+.....+.|.+.+.+.+...-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888888888888888887777777776555544444477766654443
No 371
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.02 E-value=55 Score=36.39 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=104.9
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHh--CCCChhH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQA-CVEFNRGRYSDSLEFYKRALQV--HPSCPGA 198 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la-~~~~~~g~~~~Al~~~~~al~~--~p~~~~~ 198 (1088)
.-|..+..+..+..-+++--..+.|..+|+..-.... -...++.++. .+-+..| .++...++.. .|+. .
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pnl--~ 274 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPNL--F 274 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCch--H
Confidence 3355555554444444444678889988887654322 2334444333 2233333 5666666654 4654 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH---------h
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQ------LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE---------I 263 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~---------~ 263 (1088)
++..+-.|..+-|+++.|+..+.+++. ..|.-.. ++.+.....+.+++ ...+..++..+.. +
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS-yh~iik~f~re~dp--~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS-YHLIIKNFKRESDP--QKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHhcccCCc--hhhhHHHHHHHHHhhccCcccCC
Confidence 678889999999999999988877664 3554333 33333344444431 2344444444432 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCC-chHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPT-KSHS-YYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.|.+...+.....++....+..-|.++..-.-...+- .+. .... |..+-.+.+.....+.-...|..++
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443344444777777666665544321110 111 1112 2223334444555666666666555
No 372
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.97 E-value=1.2 Score=44.56 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=45.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.....|+.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566777777777777777777777777777777777777777777788877777776
No 373
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.94 E-value=1.3 Score=31.43 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
.++..||.+|...|++.+|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999999876
No 374
>PF13041 PPR_2: PPR repeat family
Probab=86.72 E-value=1.3 Score=33.22 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=32.6
Q ss_pred hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhH
Q 001392 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 637 (1088)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~ 637 (1088)
..+|..+...+.+.|++++|.++|+++.+.+-.++.+++..+.+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777778888888888888888777766677776665544
No 375
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.48 E-value=13 Score=40.97 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=57.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 168 QACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~--------p~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
-|..++++++|..|..-|..+|.+. |.. ...+.-.+..||.++++.+.|+....+.+.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3455666666666666666665542 111 12234457888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhchHHhHHHHHHH
Q 001392 231 VEALVALAVMDLQANEAAGIRKGMEK 256 (1088)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~ 256 (1088)
..-++..|.+.....+ |.+|-..
T Consensus 262 frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHH
Confidence 8877777777777666 5555543
No 376
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.18 E-value=5 Score=39.96 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=62.7
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh
Q 001392 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYE 762 (1088)
Q Consensus 685 l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~--~~~~~l~~La~~~~~ 762 (1088)
+...-.-..|...|-++-... ..+++...+.||..|.+ .+..+|+.+|-.+|...... .++.++..|+.++++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~----~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTP----ELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 344445567777776664432 24678899999988874 78999999999999987443 459999999999999
Q ss_pred hccHHHHH
Q 001392 763 AEQWQDCK 770 (1088)
Q Consensus 763 ~g~~~~A~ 770 (1088)
.|+++.|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999885
No 377
>PF12854 PPR_1: PPR repeat
Probab=86.09 E-value=1.3 Score=30.04 Aligned_cols=29 Identities=10% Similarity=-0.021 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 747 NTDAQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
.+|..+|..|...|++.|+.++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555555555555555555555543
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.00 E-value=14 Score=42.70 Aligned_cols=133 Identities=26% Similarity=0.220 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
.....++..+..+|.++.|+.+-.. ....+ .+.++.|+++.|.+.... .+++..|..||..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----------~~~rF---eLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----------PDHRF---ELALQLGNLDIALEIAKE-----LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------------HHHHH---HHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----------hHHHh---HHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHH
Confidence 4466677777788888888765422 12233 344677888887766533 2467788888988
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001392 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (1088)
....|+++-|..+|.++- + +..|..+| ..|+.+.-.+....+.. .+ -++..-.+++..|+.
T Consensus 357 AL~~g~~~lAe~c~~k~~-----d---~~~L~lLy~~~g~~~~L~kl~~~a~~----~~------~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK-----D---FSGLLLLYSSTGDREKLSKLAKIAEE----RG------DINIAFQAALLLGDV 418 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH----TT-------HHHHHHHHHHHT-H
T ss_pred HHHcCCHHHHHHHHHhhc-----C---ccccHHHHHHhCCHHHHHHHHHHHHH----cc------CHHHHHHHHHHcCCH
Confidence 888899888888888752 2 33445555 66665443333332221 11 122333456667888
Q ss_pred HHHHHHHHHHH
Q 001392 465 ESAHQSFKDAL 475 (1088)
Q Consensus 465 ~~A~~~l~~al 475 (1088)
++.+.++.+.-
T Consensus 419 ~~cv~lL~~~~ 429 (443)
T PF04053_consen 419 EECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 88877776653
No 379
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.64 E-value=14 Score=40.84 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=17.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Q 001392 755 YLARTHYEAEQWQDCKKSLLRAIH 778 (1088)
Q Consensus 755 ~La~~~~~~g~~~~A~~~l~~al~ 778 (1088)
.-|.+.|+.|+-++|.++|+.+..
T Consensus 272 LQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 272 LQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 347778888888888888776654
No 380
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.60 E-value=6.3 Score=49.79 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK----- 333 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 333 (1088)
.|.....+..++.++...|+++.|+.+..++.- .....+.....+.+++...+..++...|+..+.++..
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 444444555555555555555555554444431 1223344555666666666666666666666666554
Q ss_pred hcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
..+..|.......+++.++...+.++.|+.+++.++..+ | .....+..++.++...+++..|+...+....+
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 112455556666667777777777777777777776542 2 23456666777777777777777666655443
No 381
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.43 E-value=31 Score=39.80 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=63.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
-...+..|+++.+....... ..-|.- ..-....+..+.++|.++.|+.+.. + +..++.+ ..++|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeL---Al~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFEL---ALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHH---HHhcCCH
Confidence 34455667777776666421 111221 2334455555666666666665532 1 3334433 3456776
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1088)
+.|...... .+++..|..||...+..|+ ++-|..+|+++-. +..|..+|...|+.+...++...
T Consensus 335 ~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKE-----LDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCC-----CSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHh-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHH
Confidence 666654432 2356677777777777777 6666666665421 22344445555555444444444
Q ss_pred HH
Q 001392 294 AL 295 (1088)
Q Consensus 294 ~l 295 (1088)
+.
T Consensus 399 a~ 400 (443)
T PF04053_consen 399 AE 400 (443)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 382
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=84.66 E-value=5 Score=41.94 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
+.+..|..+..+.+.++|.++.-+-.+|.+|.+.|.+.-|+..+...+...|+.+.+-...+.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 334467777777777777777777777777777777777777777777777777666555544
No 383
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=84.64 E-value=8.4 Score=42.76 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=6.0
Q ss_pred hhhhhhHHHhcCC
Q 001392 1011 EENANDRLAAAGL 1023 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~ 1023 (1088)
++..-.+|-+-|-
T Consensus 511 ~sv~~~~lcaidq 523 (708)
T KOG3654|consen 511 ESVHSGLLCAIDQ 523 (708)
T ss_pred Hhhhhhhhccccc
Confidence 3344455544443
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.59 E-value=6.3 Score=34.38 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 138 LLAKGEVEQASSAFKIVLEADR----DN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p----~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
.+..|+|..|++.+.+.+.... .. ..+++.+|.+....|++++|+..+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455666666555555543321 11 2345555666666666666666666665543
No 385
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=84.14 E-value=3.4 Score=46.48 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
......|+..|.+++...|.....+..++.++++. |+.-.|+.-+..++.++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34556899999999999999999999999988876 566778888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001392 184 FYKRALQVHPSC 195 (1088)
Q Consensus 184 ~~~~al~~~p~~ 195 (1088)
....+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
No 386
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.91 E-value=8.4 Score=38.42 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001392 393 EKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 393 ~~A~~~~~k~l~~~-p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
+.|...|-++-... -+++...+.||..|...+..+++..+-+++.+... +...+++++..|+.++...|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44554444433221 23566666666666666666677766666666544 23455777777777777777777664
No 387
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.73 E-value=1e+02 Score=36.68 Aligned_cols=20 Identities=0% Similarity=0.145 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCCCHHHHhhH
Q 001392 662 ELYTRVIVQHTSNLYAANGA 681 (1088)
Q Consensus 662 ~~~~~al~~~p~~~~a~~~l 681 (1088)
.-|+++.+.+|.+...+...
T Consensus 763 aEFDqiMksDPe~m~~lv~k 782 (1259)
T KOG0163|consen 763 AEFDQIMKSDPETMLELVAK 782 (1259)
T ss_pred HHHHHHHhcCHHHHHHHHHH
Confidence 34788888898876555433
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.62 E-value=3.4 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSA 150 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~ 150 (1088)
|+.+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 389
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.29 E-value=5.3 Score=43.76 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=22.0
Q ss_pred CHHHHHHH----HHHHHHcCCHHHHHHHHHhcCCC
Q 001392 39 PLDLWLII----AREYFKQGKVEQFRQILEEGSSP 69 (1088)
Q Consensus 39 ~~~~~~~l----a~~y~~~g~~~~a~~~l~~a~~~ 69 (1088)
..+-|+.. |..+|++|+|..|.--|..+++.
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLel 205 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALEL 205 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34456555 56899999998888777776654
No 390
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.21 E-value=1 Score=53.33 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhC
Q 001392 821 NAVRVFSHLSAA 832 (1088)
Q Consensus 821 ~A~~~f~~l~~~ 832 (1088)
+|+.-|.++...
T Consensus 1258 ~aIh~FD~ft~~ 1269 (1516)
T KOG1832|consen 1258 EAIHRFDQFTDY 1269 (1516)
T ss_pred HHHhhhhhheec
Confidence 566666666644
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.07 E-value=57 Score=34.43 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccH
Q 001392 692 DVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQW 766 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~ 766 (1088)
...+.++.++.+......-. -...+...+|.-|+..|++++|+.+|+.+...|....- ..++..|..|+...|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 34455666666555321111 13446678899999999999999999999887754333 66777888999999999
Q ss_pred HHHHHHHHHHH
Q 001392 767 QDCKKSLLRAI 777 (1088)
Q Consensus 767 ~~A~~~l~~al 777 (1088)
+..+.+.-+++
T Consensus 235 ~~~l~~~leLl 245 (247)
T PF11817_consen 235 EDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHh
Confidence 98887765543
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.04 E-value=3.8 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH--HHHHhCC
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYK--RALQVHP 193 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~--~al~~~p 193 (1088)
.++++|..++.+|+|++|+.+|+ -+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 45555666666666666666632 4444444
No 393
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.87 E-value=23 Score=37.67 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
++..++..+...|+++.+...++..+..+|-+-.+|..+...|+..|+...|+..|.++-..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777777776553
No 394
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.80 E-value=2.5 Score=29.53 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
++|..||.+-+..++|.+|+.-|++|+..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999875
No 395
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.30 E-value=1.8 Score=27.26 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMY 737 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~ 737 (1088)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 396
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.15 E-value=22 Score=37.81 Aligned_cols=65 Identities=23% Similarity=0.409 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
...++..++..+...|+++.++..+++.+..+|-+-..|..+...| ..|+...|+..|.++....
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3456677777777778888888888888888888877777777777 7788888888887777643
No 397
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=81.32 E-value=11 Score=37.35 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhccC
Q 001392 917 EEHFQRVKEQWRSST 931 (1088)
Q Consensus 917 ~~~~~~~~~~~~~~~ 931 (1088)
|++.++..+.|-+..
T Consensus 112 EEKRrqkie~we~~q 126 (190)
T PF06936_consen 112 EEKRRQKIEMWESMQ 126 (190)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445556675543
No 398
>PLN03237 DNA topoisomerase 2; Provisional
Probab=79.87 E-value=27 Score=45.68 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=17.9
Q ss_pred CchhhhhhhhHHHhcCCCCC----CCCCCCCCCch
Q 001392 1007 DDDVEENANDRLAAAGLEDS----DVDDEMAPSIT 1037 (1088)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 1037 (1088)
+++.-.+-+++|++-.|.-+ -.-.++.|+++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1465)
T PLN03237 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293 (1465)
T ss_pred ccccHHHHHHHHHhccccCCCCcccccccccccch
Confidence 33444567888999888432 22233555555
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.86 E-value=80 Score=33.34 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001392 424 DTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1088)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1088)
.....+..+.++...+...+.... ..+...+|..|+..|++++|..+|+.+........
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------------------- 212 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------------------- 212 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 445567777888887776544222 45667899999999999999999999864211000
Q ss_pred hhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 001392 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1088)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1088)
-......++..+..|+...|+.+..+.+.-++
T Consensus 213 -----------------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 213 -----------------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11224556777788888888888777665444
No 400
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.33 E-value=2.8 Score=26.33 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFK 152 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~ 152 (1088)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665553
No 401
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=79.14 E-value=16 Score=38.38 Aligned_cols=76 Identities=28% Similarity=0.293 Sum_probs=66.7
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
..++-..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...+...|+++.+-..-..+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455677888999999999999999999999999999999999999999999999999999999987766555544
No 402
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=78.32 E-value=70 Score=31.25 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc-----C--CchHHHHHHHHHHHH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-----G--QFDVSKDLFTQVQEA 704 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~-----g--~~~~A~~~~~~~~~~ 704 (1088)
+++..|++.|..+-. .+.+.+...+|.++... + +..+|..++.++-+.
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 445555555555443 22334444444444321 1 245566666665554
No 403
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.21 E-value=1.2 Score=52.72 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=6.5
Q ss_pred chhccCcchhhccC
Q 001392 1063 DELQDSDGELREND 1076 (1088)
Q Consensus 1063 ~~~~~~~~~~~~~~ 1076 (1088)
++.++.+|++-|.+
T Consensus 1488 D~Dee~~~~~~d~~ 1501 (1516)
T KOG1832|consen 1488 DEDEEDDGEMQDFM 1501 (1516)
T ss_pred ccchhhhhhhhccc
Confidence 44444455544433
No 404
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.90 E-value=82 Score=35.12 Aligned_cols=136 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFNR----GR 177 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~ 177 (1088)
..+...++.-+.+...+++.+|+...+|..+..++.+.+. +..=+.++.++++.+|.|..+|..+=.+.-.. ..
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 3456677888999999999999999999999999998874 68889999999999999988876554444332 23
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
..+=+.+..+++.-++.+ -.+|.....++-. .|+ ...-+.....|+-.+|++..+|+..-.+
T Consensus 165 ~~~El~ftt~~I~~nfSN-YsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWL 238 (421)
T KOG0529|consen 165 EKEELEFTTKLINDNFSN-YSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWL 238 (421)
T ss_pred chhHHHHHHHHHhccchh-hhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHh
Confidence 677788999999988887 3444444443331 231 2233445566677799999998874333
No 405
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=77.26 E-value=40 Score=29.52 Aligned_cols=14 Identities=14% Similarity=0.295 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 001392 854 HLLDAAKIHREAAE 867 (1088)
Q Consensus 854 ~~l~~~~~~~~~~~ 867 (1088)
++|......+..++
T Consensus 59 ~ILDd~~~~l~~sk 72 (105)
T PF11214_consen 59 SILDDTESKLNDSK 72 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 406
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.08 E-value=1.1e+02 Score=33.16 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHh-hHHHHHHh-----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHcc
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAAN-GAGVVLAE-----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~-~la~~l~~-----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 728 (1088)
+-++++..++.+++....--++... .++.++.. .-++..-..+|+-.....| +|.+-+|.+......-
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap------SPvV~LNRAVAla~~~ 343 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP------SPVVTLNRAVALAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC------CCeEeehHHHHHHHhh
Confidence 6677777888887776533333322 23333332 2366666777777777775 6778888888887777
Q ss_pred CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHH
Q 001392 729 NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1088)
Q Consensus 729 ~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~ 792 (1088)
-...++.+.+-....-.-....-.+..-|..+.+.|+..+|...|.+++.+.++...-.|-...
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 7888888877766541112223334456778889999999999999999999887665554433
No 407
>PRK12798 chemotaxis protein; Reviewed
Probab=76.68 E-value=1.4e+02 Score=33.70 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=14.2
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHHh
Q 001392 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1088)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1088)
..|+.++..-.-.|+.+-|...-.+++.+
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 34444455555555555555555544444
No 408
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.99 E-value=27 Score=39.42 Aligned_cols=64 Identities=27% Similarity=0.279 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-----cCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 307 SYYNLARSYHSKGDYEKAGLYYMASVKE-----INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
+...+.++++..|+|..|++.+...--. ...++-.+..++.+|.+|+.+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888877654210 012344556677888888888888888888877764
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.38 E-value=4.8 Score=45.17 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~a-------l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|.||..+++|.+|+..|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888889999998887643 2222444466788999999999999999999998764
No 410
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=74.26 E-value=85 Score=30.18 Aligned_cols=45 Identities=9% Similarity=-0.035 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 840 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 884 (1088)
Q Consensus 840 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~~ 884 (1088)
+-...++.|...+.+-|..+....+++++...+...++.++|+.+
T Consensus 28 PI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA 72 (154)
T PRK06568 28 AILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLR 72 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456677777777777777777766665555556665555543
No 411
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=74.04 E-value=4.7 Score=44.53 Aligned_cols=11 Identities=55% Similarity=0.903 Sum_probs=9.3
Q ss_pred cCCCCCCCCCC
Q 001392 1021 AGLEDSDVDDE 1031 (1088)
Q Consensus 1021 ~~~~~~~~~~~ 1031 (1088)
+|++|||+++|
T Consensus 107 ~GFAdSDDEdD 117 (458)
T PF10446_consen 107 AGFADSDDEDD 117 (458)
T ss_pred ccccccccccc
Confidence 79999988865
No 412
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=73.94 E-value=93 Score=30.47 Aligned_cols=186 Identities=12% Similarity=0.029 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhcCCCCC
Q 001392 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-----TGQHFLVEQLTETALAVTNHGPT 303 (1088)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~~~~~~~ 303 (1088)
..+++-..|+..+.... .+++.|..+|..-..-+ ..+...+.++.+++. .++...|++.+..+-. ..
T Consensus 32 K~Pe~C~lLgdYlEgi~--knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~-----~n 103 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQ--KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD-----AN 103 (248)
T ss_pred CCchHHHHHHHHHHHHH--HHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc-----cC
Confidence 35566666665443331 23666666666543332 234455555554442 2345556666555542 44
Q ss_pred chHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 001392 304 KSHSYYNLARSYHSK-----G--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-- 374 (1088)
Q Consensus 304 ~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-- 374 (1088)
.+.+...+|.+++.- + +..+|..++.++.. -.+..+.+.|...|+.-.+ + +....|.
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd-----l~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g 169 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD-----LEDGEACFLLSTMYMGGKE--K-------FKTNAPGEG 169 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc-----CCCchHHHHHHHHHhccch--h-------hcccCCCCC
Confidence 556666666666542 2 25666777766653 3344455555555543211 1 1111221
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHh
Q 001392 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-----DTGAALDAFKTARTLLKK 441 (1088)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~-----~~~~A~~~~~~a~~~~~~ 441 (1088)
.+. ..+..+.-..+.++|.++--++.++. ++.+.-++++.|..| +..+|..+-.++.++...
T Consensus 170 ~p~---~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e 236 (248)
T KOG4014|consen 170 KPL---DRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEE 236 (248)
T ss_pred CCc---chhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHH
Confidence 111 12233344567788888877777664 667777777777444 456777776666666543
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.76 E-value=1.5e+02 Score=37.24 Aligned_cols=114 Identities=18% Similarity=0.032 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCchhhHhhHHHHHHHcCCH--HHHHHHHHHHHHhCCCcHH------
Q 001392 307 SYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDF--RSALTNFEKVLEIYPDNCE------ 377 (1088)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~------ 377 (1088)
-+..|+..|...|++++|++++........ .++.....+-.....+...+.. +-..++-.-++..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 456667777777777777777777765221 1122222222333333334433 4444444444444443210
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 001392 378 -------TLKALGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL 420 (1088)
Q Consensus 378 -------~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~-~~~~~~~la~l~ 420 (1088)
.-.....-|.......-++.+++.++..... +...+..++.+|
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 0011112234556677777788877766544 444555555555
No 414
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=73.60 E-value=1.5e+02 Score=32.67 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=46.9
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~ 603 (1088)
+-..|+....++...++|++-..+... +. .|..|.-...++...|+..+|..++.+ +. . .....+|
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s--kK---sPIGyepFv~~~~~~~~~~eA~~yI~k---~~----~--~~rv~~y 272 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS--KK---SPIGYEPFVEACLKYGNKKEASKYIPK---IP----D--EERVEMY 272 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC--CC---CCCChHHHHHHHHHCCCHHHHHHHHHh---CC----h--HHHHHHH
Confidence 445666667777777777765554332 22 234455555566667777777777666 11 1 3445566
Q ss_pred hcccchHHHHHHHH
Q 001392 604 LKNDDWVKAKETFR 617 (1088)
Q Consensus 604 ~~~g~~~~A~~~~~ 617 (1088)
++.|+|.+|.+...
T Consensus 273 ~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 273 LKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHH
Confidence 77777777766533
No 415
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=73.25 E-value=1.2e+02 Score=31.62 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..+|.+..+.|+|++.+.++++++..+|.....-+..+..+|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3455666666666666666666666666555444444444444
No 416
>PTZ00121 MAEBL; Provisional
Probab=72.85 E-value=38 Score=43.37 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=5.9
Q ss_pred HHHHHHHhhcCCCC
Q 001392 114 TQYYNKASRIDMHE 127 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~ 127 (1088)
+..|.-++..-|.+
T Consensus 136 lAMyqGlf~~CP~~ 149 (2084)
T PTZ00121 136 LAMYQGLFKRCPLD 149 (2084)
T ss_pred HHHHhchhhcCCCc
Confidence 33344444444433
No 417
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.57 E-value=62 Score=39.40 Aligned_cols=355 Identities=13% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch----HHhHHHHHHHHHHHHHh----CCCCHHHHHHH
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE----AAGIRKGMEKMQRAFEI----YPYCAMALNYL 274 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----~~~~~~Al~~~~~al~~----~p~~~~~~~~l 274 (1088)
+...+.+.|.+++|..+....-.........+......+....+ ...-.+-...|++.+.. ||....++..+
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~il 196 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKIL 196 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHhcCCCCCch-hhHhhH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK-----AGLYYMASVKEINKPHEFI-FPYYGL 348 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~-~~~~~l 348 (1088)
|.+-.............+. ..|+.+..+-.....-.. .+.-+++.+..++...... ..-...
T Consensus 197 g~cD~~~~~~~~V~~tiED------------~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Y 264 (613)
T PF04097_consen 197 GRCDLSRRHLPEVARTIED------------WLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLY 264 (613)
T ss_dssp HT--CCC-S-TTC--SHHH------------HHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------H
T ss_pred hcCCccccchHHHhCcHHH------------HHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHhc
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELLIS 422 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~~~ 422 (1088)
..+++-.|+|+.|+.++-. .+.+..--..+|.++...|-+.-.-..-...+..++.+ +.........+..
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-----------HHH------HHhcchhhhhcc
Q 001392 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS-----------FKD------ALGDGIWLTLLD 485 (1088)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-----------l~~------al~~~~~~~~~~ 485 (1088)
.+...|+.+|--+..... .......+..+..+....+++..-+-. +.+ ...
T Consensus 341 td~~~Al~Y~~li~~~~~---~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~--------- 408 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKD---PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDD--------- 408 (613)
T ss_dssp T-HHHHHHHHHGGGGS-S---CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SS---------
T ss_pred cCHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCC---------
Q ss_pred cccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHH
Q 001392 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL 565 (1088)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 565 (1088)
.......+....|.-....|++.+|+.+|.-+-..+.--.-.-..|
T Consensus 409 ----------------------------------~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L 454 (613)
T PF04097_consen 409 ----------------------------------DEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL 454 (613)
T ss_dssp ----------------------------------SSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------------------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHcCC-----------hHHHHHHHHHHHH-------HCCCChhHHHhhhhh-----hhcccchHHHHHHHHHh
Q 001392 566 AAIAKARNN-----------LQLSIELVNEALK-------VNGKYPNALSMLGDL-----ELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 566 a~~~~~~g~-----------~~~A~~~l~~al~-------~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~a 619 (1088)
+.+...... ...|..+.+..-. ..+....+...|-.+ ++..|+|+.|+..+++.
T Consensus 455 s~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 455 SQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 418
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=71.44 E-value=1e+02 Score=30.04 Aligned_cols=44 Identities=20% Similarity=0.076 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 839 GFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (1088)
Q Consensus 839 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~ 882 (1088)
|+-..-...|...+.+-+..++....+++....+..++++++|+
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~ 72 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEARE 72 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677777777777777766666666666666666663
No 419
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=70.87 E-value=4.5 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~ 69 (1088)
.|..+...|++.|++++|..++.++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 5889999999999999999999987654
No 420
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.14 E-value=5 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=14.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 001392 718 INLAHVYFAQGNFALAMKMYQNCLR 742 (1088)
Q Consensus 718 ~~la~~~~~~g~~~~Ai~~~~~al~ 742 (1088)
++||..|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3555556666666666666555553
No 421
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=69.70 E-value=9.9 Score=26.59 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1088)
++..+|.+.+..++|++|+.-|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666666665543
No 422
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.40 E-value=1e+02 Score=33.17 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=60.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR------DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGA 198 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~ 198 (1088)
-..++..+|..|++.|+-+.|++.|.+.....- +-..+.+.+|..|....-..+.+...+.+++...+- ...
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 356888899999999999999988887765431 123345556666655544455555555555444332 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
.....|..+....++.+|...|-.++..
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 3344556666666777777666665544
No 423
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.95 E-value=84 Score=30.58 Aligned_cols=51 Identities=29% Similarity=0.292 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 001392 875 QRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW 927 (1088)
Q Consensus 875 ~k~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1088)
.++.++|..|+++++ ++.++..+++..+++++..+++.|.++.+....+.=
T Consensus 121 ~~~~~~R~~Rla~~~--~E~~~~i~ee~~~~~e~~~a~k~qae~eVl~~iers 171 (227)
T KOG4691|consen 121 RRLHELRIARLAQEE--REQEQRIAEEQARKAEEVQAWKQQAEREVLQLIERS 171 (227)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544322 222333334444455555556666666555555544
No 424
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.54 E-value=17 Score=38.17 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=29.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 382 la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
.+..|...|.+.+|+.+.++++.++|-+...+..+..++ ..|+--.+.+.|++..+.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 344445555555555555555555555555555555555 5555555555554444433
No 425
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.54 E-value=9.7 Score=27.64 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001392 44 LIIAREYFKQGKVEQFRQILEEGSSP 69 (1088)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~~ 69 (1088)
+.+|.+|+..|+.+.|..+|+..+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 67999999999999999999998743
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.48 E-value=1.6e+02 Score=32.80 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH---HhcCCCCCHH
Q 001392 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDP---RDAQAFIDLGELL-ISSDTGAALDAFKTARTLL---KKAGEEVPIE 449 (1088)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p---~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~ 449 (1088)
.++..+|.-|...|+++.|+..|-++-...- .....+.++..+- ..++|..-..+..++.... .+.....++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4677788888889999999999988554432 2355666666666 7888888887777776652 1222233455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 450 VLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+...-|.+++..++|..|..+|-.+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666667778888899999999976654
No 427
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=68.40 E-value=53 Score=38.42 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=6.5
Q ss_pred chHHHHhhhcC
Q 001392 1036 ITAARRRRALS 1046 (1088)
Q Consensus 1036 ~~~~~~~~~~~ 1046 (1088)
|.+.+.||-|-
T Consensus 502 S~~VsarrPlA 512 (811)
T KOG4364|consen 502 SQVVSARRPLA 512 (811)
T ss_pred ccccccCCccc
Confidence 55566666664
No 428
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=68.12 E-value=1.1e+02 Score=31.23 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (1088)
Q Consensus 843 ~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~ 883 (1088)
..+..|...+...+..+.....++++...+...++.++|..
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666655555555555555543
No 429
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.25 E-value=2.7e+02 Score=33.06 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001392 106 KEEHFILATQYYNKASRIDMHEP------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1088)
|.++|..+++.|...++.-|.+. ...-.++.+|+...+++.|.+++..+-+.+|.++...+..-.+....++-.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 46778888888888887777653 334446778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHh
Q 001392 180 DSLEFYKRALQV 191 (1088)
Q Consensus 180 ~Al~~~~~al~~ 191 (1088)
+|+.........
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 888887776654
No 430
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=66.75 E-value=1.8e+02 Score=33.47 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=14.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Q 001392 312 ARSYHSKGDYEKAGLYYMASVKE 334 (1088)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~ 334 (1088)
|..|...|+...|+..|..+...
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 45566666667776666666653
No 431
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=66.74 E-value=1.2e+02 Score=32.47 Aligned_cols=9 Identities=11% Similarity=0.545 Sum_probs=5.7
Q ss_pred HHHHHhhhc
Q 001392 921 QRVKEQWRS 929 (1088)
Q Consensus 921 ~~~~~~~~~ 929 (1088)
-+....|+.
T Consensus 169 le~Ik~~kK 177 (271)
T PF05890_consen 169 LEKIKKWKK 177 (271)
T ss_pred HHHHHHHHh
Confidence 455567876
No 432
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.66 E-value=1.9e+02 Score=31.00 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 001392 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 726 (1088)
Q Consensus 660 A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~ 726 (1088)
|..+|.+|+.+.|.+...++.+|.+....|+.-.|+-+|-+++-... ..+.+..||...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~-----Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRI-----PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999988888875432 357788899888877
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.79 E-value=15 Score=23.88 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
+.+.|..+|++++...|.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455555666666655655555554443
No 434
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.37 E-value=28 Score=36.60 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=53.7
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
.+...+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.++..|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345567888899999999999999999999999999999999999999999999888764
No 435
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.93 E-value=55 Score=38.92 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChh
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--------NVPALLGQACVE-FNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~la~~~-~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
.+++-..+-..|....+|+.-+++.+..- .-|+ +...++..|.-- -+-|+-.+|+...-.+++......+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34555566666777777877777666543 3332 112222222111 1236677787777777776544445
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCC
Q 001392 198 AIRLGIGLCRYKL---------GQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 198 ~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p 228 (1088)
+.+...|.+|-.+ +..+.|+.+|+++.+..|
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 5555556655432 345556666666666665
No 436
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.75 E-value=1.9e+02 Score=30.33 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
++.++.+..+.|+|++++.++.+++..+|. +..-...++.+|-.. .+....+...+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~--i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNV--IGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc--cccchHHHHhhhhHh
Confidence 466889999999999999999999999876 344455555554332 111444444444433
No 437
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=64.63 E-value=2.6e+02 Score=32.05 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=59.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHCCCC----hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHH
Q 001392 567 AIAKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642 (1088)
Q Consensus 567 ~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~ 642 (1088)
.......+.+.+..++.+.-.. |.. +.+...+...++..|..+.++.++..=+..+--+|.++.+.|-+. ++..
T Consensus 74 n~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~-fl~~ 151 (429)
T PF10037_consen 74 NNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH-FLKK 151 (429)
T ss_pred hhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH-Hhhc
Confidence 3333444455566665554322 222 223446677788888888888888876665544577777777777 7777
Q ss_pred hhhhhcChhHHHHHHHHHHHHHHHHHhcC
Q 001392 643 LRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (1088)
Q Consensus 643 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 671 (1088)
|++..|.++...+...+
T Consensus 152 ------------~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 152 ------------GNYKSAAKVATEMMLQE 168 (429)
T ss_pred ------------ccHHHHHHHHHHHHHhh
Confidence 88888888887766544
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.61 E-value=3.4e+02 Score=33.38 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=40.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 001392 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 452 (1088)
Q Consensus 382 la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 452 (1088)
+..++.+..+++.++.+.+.. .+.++..|..+-..+ ..+..+.-.+...+.++.......-++..++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~ 779 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQ 779 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 344555666777777666654 455677777777766 66666666666666666655533333334443
No 439
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.41 E-value=96 Score=36.25 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
++..-|-.+|...+..|++..|.++|.++-. ...++ .++-..|+-+.-..+-..+-+....+ . .=.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~Ll---Ll~t~~g~~~~l~~la~~~~~~g~~N-~-----AF~ 729 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLL---LLYTSSGNAEGLAVLASLAKKQGKNN-L-----AFL 729 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhh---hhhhhcCChhHHHHHHHHHHhhcccc-h-----HHH
Confidence 4566788888888888888888888877632 22222 22333444332222222222222222 1 125
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 001392 206 CRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~a 223 (1088)
||+..|+++++...+...
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 778888888888776653
No 440
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.39 E-value=48 Score=33.45 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.++..+.+.+|+...+.-++..|.+......+-.++.-.|+|++|+.-++-+-.+.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44555666666666666666666666666566666666666666666666666666655
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.80 E-value=1.3e+02 Score=36.09 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~ 686 (1088)
|+-.+|+...-.+++......+-.++.-|.+ |-...-. +.-...+..+.|+..|++++...|. .++-.+++.++.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRI-YKDmF~~---S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRI-YKDMFIA---SNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLR 331 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechh-hhhhhhc---cCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHH
Confidence 5666777776666665433222223334555 4333111 0001128889999999999999996 334445566665
Q ss_pred hcC
Q 001392 687 EKG 689 (1088)
Q Consensus 687 ~~g 689 (1088)
..|
T Consensus 332 aaG 334 (1226)
T KOG4279|consen 332 AAG 334 (1226)
T ss_pred Hhh
Confidence 555
No 442
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.12 E-value=7.1 Score=25.98 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~ 69 (1088)
.|..+...|++.|++++|..+|..+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5888999999999999999999997654
No 443
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=62.85 E-value=10 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=14.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 001392 717 WINLAHVYFAQGNFALAMKMYQNCLR 742 (1088)
Q Consensus 717 ~~~la~~~~~~g~~~~Ai~~~~~al~ 742 (1088)
|..+..+|.+.|++++|..+|+.+.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555555555555555555555543
No 444
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.80 E-value=4e+02 Score=33.56 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcC
Q 001392 47 AREYFKQGKVEQFRQILEEGS 67 (1088)
Q Consensus 47 a~~y~~~g~~~~a~~~l~~a~ 67 (1088)
|..++.+|+|++|...|.++.
T Consensus 353 a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 353 AFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHHhhc
Confidence 788999999999999998863
No 445
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.70 E-value=2.2e+02 Score=32.81 Aligned_cols=174 Identities=16% Similarity=0.046 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhh-hhH-HHHHHHHHHHHHHHHHhchhhh---hhhhhHHHHHHHHHH
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYA-DVR-YERIAILNALGVYYTYLGKIET---KQREKEEHFILATQY 116 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~-~~~-~~~~~~~~~la~~y~~~g~~~~---~~~~r~~~~~~A~~~ 116 (1088)
..-.+|-.++--|+|+-|..+++.+... |. |.. .--..++-..+.+.+..+..-. .+..-+..++.|...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~D-----f~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKD-----FKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHH-----HhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 4456888999999999999999986431 22 111 1112233334444444443321 112234677888888
Q ss_pred HHHHh----hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC--C---CHHHHHHHHHHH--HHcCChHHHHH
Q 001392 117 YNKAS----RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DR--D---NVPALLGQACVE--FNRGRYSDSLE 183 (1088)
Q Consensus 117 ~~~a~----~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p--~---~~~a~~~la~~~--~~~g~~~~Al~ 183 (1088)
|.++- ..........+..+.++...|.+.+|...+-+.... .. . ....+-..|.++ ........-..
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence 88842 222233456666777788888888877766666544 21 1 222333334443 11100000000
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
-+++ .+..++.-|.-|...|+...|..+|..++....
T Consensus 365 r~RK--------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 365 RFRK--------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hhHH--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0000 022344567778888999999999988887643
No 446
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.26 E-value=76 Score=32.22 Aligned_cols=6 Identities=50% Similarity=0.556 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001392 865 AAEREE 870 (1088)
Q Consensus 865 ~~~~~e 870 (1088)
+++..+
T Consensus 122 e~E~~e 127 (299)
T KOG3054|consen 122 EAEEAE 127 (299)
T ss_pred HHHHHH
Confidence 333333
No 447
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.94 E-value=19 Score=23.39 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001392 143 EVEQASSAFKIVLEADRDNVPALLGQA 169 (1088)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1088)
+++.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344455555555555554444444433
No 448
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=61.46 E-value=1.4e+02 Score=27.93 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=20.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1088)
.+...+.+...+.+++.++..++.++.....+..+|.+
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 33344555555555555555554455555555555544
No 449
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=61.39 E-value=7.2 Score=25.94 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~ 69 (1088)
..|..+..+|.+.|+++.|..+|+.+...
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987543
No 450
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=60.99 E-value=1.7e+02 Score=29.77 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (1088)
Q Consensus 843 ~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~ 883 (1088)
.....|.......+..++...+++++...+.+.+++.++..
T Consensus 75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~e 115 (205)
T PRK06231 75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQ 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777666666555555555555543
No 451
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.96 E-value=1.1e+02 Score=32.16 Aligned_cols=168 Identities=11% Similarity=0.022 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA--------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--G 176 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g 176 (1088)
...-..|++.-...+..+|..-.+|..+-.+... ..-++.-+..+..+++.+|.+...|..+-.++-.- .
T Consensus 45 keys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~ 124 (328)
T COG5536 45 KEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKP 124 (328)
T ss_pred hhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCc
Confidence 3444567777777777778777777665544433 12356667888888999999988888777766554 6
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHhhchH
Q 001392 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLC------RYKLGQLGKARQAFQRALQLDPENVEALVAL---AVMDLQANEA 247 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l---a~~~~~~~~~ 247 (1088)
++..-+.+.++++..+|.+ -.+|...-.| ...-..+..-.+.-..++..++.|..||... ....+..|+.
T Consensus 125 ~~~rEl~itkklld~DsrN-yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 125 SWGRELFITKKLLDSDSRN-YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred ccchhHHHHHHHhcccccc-cceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
Confidence 6777888888888888877 2222221111 2233334444555556677788888887666 3333334442
Q ss_pred Hh---HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001392 248 AG---IRKGMEKMQRAFEIYPYCAMALNYLA 275 (1088)
Q Consensus 248 ~~---~~~Al~~~~~al~~~p~~~~~~~~la 275 (1088)
.+ +.+-+.+.-.++-.+|.+..++..+-
T Consensus 204 isqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 204 ISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred chHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 21 45556666666667777776665543
No 452
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=60.93 E-value=1.1e+02 Score=33.92 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
++..+.+.+.-.|++....+.+...-+..-.......+-+..|.+|+..++|.+|+..|-.++-
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777788855544444332221111112222337788888999999999888877764
No 453
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.79 E-value=3.5e+02 Score=32.17 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCHH------HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHcc
Q 001392 655 THLEKAKELYTRVIVQHTSNLY------AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~------a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 728 (1088)
.+|..++++|...+..-|.+.+ ..-.++.+|....+++.|.+++.++-+..| .++-..+.+-.+...-|
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-----~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-----QSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHhc
Confidence 8899999999999988877543 234678888888899999999999999887 56666666777777889
Q ss_pred CHHHHHHHHHHHHHHhcC
Q 001392 729 NFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 729 ~~~~Ai~~~~~al~~~~~ 746 (1088)
+-.+|+.........+..
T Consensus 443 ~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSSEDE 460 (872)
T ss_pred chHHHHHHHHHHHhhhcc
Confidence 999999998888877643
No 454
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.24 E-value=1.2e+02 Score=26.83 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=50.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHH
Q 001392 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1088)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~ 219 (1088)
-....++|..+.+-.-........+.+.+...+.++|+|++|+.. ...... +++--..+.|-+++|--+++...
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~-----~~~~~~-pdL~p~~AL~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLL-----PQCHCY-PDLEPWAALCAWKLGLASALESR 91 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHH-----HTTS---GGGHHHHHHHHHHCT-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHh-----cccCCC-ccHHHHHHHHHHhhccHHHHHHH
Confidence 334577887777665444443455667778889999999999221 122222 45555688999999999999888
Q ss_pred HHHH
Q 001392 220 FQRA 223 (1088)
Q Consensus 220 ~~~a 223 (1088)
+.+.
T Consensus 92 l~rl 95 (116)
T PF09477_consen 92 LTRL 95 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 455
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.04 E-value=18 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=14.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 001392 717 WINLAHVYFAQGNFALAMKMYQNCLR 742 (1088)
Q Consensus 717 ~~~la~~~~~~g~~~~Ai~~~~~al~ 742 (1088)
|..+..+|.+.|++++|..+|..+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555555666666666555544
No 456
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=59.93 E-value=1.4e+02 Score=32.01 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 001392 856 LDAAKIH 862 (1088)
Q Consensus 856 l~~~~~~ 862 (1088)
|.++...
T Consensus 142 lEQAl~E 148 (291)
T PF06098_consen 142 LEQALME 148 (291)
T ss_pred HHHHHHH
Confidence 5554443
No 457
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=59.90 E-value=47 Score=36.63 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 001392 818 ELENAVRVFSHLS 830 (1088)
Q Consensus 818 ~l~~A~~~f~~l~ 830 (1088)
-+..+..+...+.
T Consensus 236 l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 236 LLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHhh
Confidence 3444445555554
No 458
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.37 E-value=44 Score=36.98 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh----------CCCcHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----------YPDNCE 377 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~ 377 (1088)
+..+|..|...|+++.|+..|.++..-.......+..+.++..+-+..|+|.....+..++... -|. .
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~--k 230 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA--K 230 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc--c
Confidence 3444444445555555555554433322222233334444444444555554444444444332 122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Q 001392 378 TLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDLGEL 419 (1088)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~k~l~~--------~p~~~~~~~~la~l 419 (1088)
+...-|.+....+++..|..+|-.+..- .|.+..+|..|..+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 3344445555556888888777655321 35556666555443
No 459
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=59.37 E-value=14 Score=41.94 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=5.6
Q ss_pred cCCCCCCCCCC
Q 001392 1021 AGLEDSDVDDE 1031 (1088)
Q Consensus 1021 ~~~~~~~~~~~ 1031 (1088)
.|..|+|+|++
T Consensus 336 ~desDeedd~e 346 (555)
T KOG2393|consen 336 SDESDEEDDLE 346 (555)
T ss_pred ccccccccCcc
Confidence 45555555443
No 460
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.65 E-value=61 Score=33.23 Aligned_cols=6 Identities=50% Similarity=0.545 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001392 659 KAKELY 664 (1088)
Q Consensus 659 ~A~~~~ 664 (1088)
.|.+.|
T Consensus 180 ~a~eaf 185 (445)
T KOG2891|consen 180 KAFEAF 185 (445)
T ss_pred HHHHHh
Confidence 333333
No 461
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=58.20 E-value=1.9e+02 Score=28.33 Aligned_cols=41 Identities=7% Similarity=0.174 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (1088)
Q Consensus 843 ~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~ 883 (1088)
.....|...+...+..+.....++++...+..+++.++|+.
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~e 89 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEK 89 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555555555555443
No 462
>PLN03086 PRLI-interacting factor K; Provisional
Probab=58.19 E-value=58 Score=38.41 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001392 871 QQNRQRQEAARQAALA 886 (1088)
Q Consensus 871 ~~~~~k~e~~r~~~~~ 886 (1088)
++.+.|++.+|+.+++
T Consensus 21 ~~~~~~~~~~~~~~~~ 36 (567)
T PLN03086 21 QRAKLKLERERKAKEE 36 (567)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 463
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.99 E-value=29 Score=32.80 Aligned_cols=51 Identities=24% Similarity=0.146 Sum_probs=38.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
......+..+...+..|++.-|..+++.++..+|+|..+...++.++..+|
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888888888888888887776554
No 464
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=57.77 E-value=2.1e+02 Score=28.55 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 844 KINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (1088)
Q Consensus 844 ~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~ 882 (1088)
.+..|.....+.+..+....+++++...+...++..+|+
T Consensus 59 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~ 97 (181)
T PRK13454 59 VLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARA 97 (181)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555555444444444444443
No 465
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=57.58 E-value=16 Score=39.60 Aligned_cols=77 Identities=22% Similarity=0.159 Sum_probs=64.7
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1088)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l 419 (1088)
..+.+++.+-+..+.+..|+.....++..++....+++..+..+....++++|++.+..+....|++......+..+
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34556788888889999998888888888888889999999999999999999999999999999987766555443
No 466
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=57.04 E-value=1.9e+02 Score=27.94 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 844 KINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (1088)
Q Consensus 844 ~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~ 882 (1088)
....|.+.....+..+.....+++....+.+.++..+|.
T Consensus 50 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ 88 (156)
T CHL00118 50 VLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARK 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555555544455555444
No 467
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.26 E-value=1.4e+02 Score=29.51 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc---CCCchhhhhhhhHHHHHHHHHHHHHHHHHh--chhh---hhhhhhHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEEG---SSPEIDEYYADVRYERIAILNALGVYYTYL--GKIE---TKQREKEEHFI 111 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~la~~y~~~--g~~~---~~~~~r~~~~~ 111 (1088)
.++++--+..|++.|++.+|.++.+.+ +.. +.. ....+... ..+..+..+. |..- .+..++--=++
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~-~~~----~~a~~~k~-l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLE 86 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVG-PLK----LTATQLKT-LRIMQFLSRIAEGKNLDCQFENDEELTPLE 86 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhc-ccc----ccccchhH-hHHHHHHHHHHcCCCCCCccCCCCCcChHH
Confidence 467788899999999999998876653 211 110 00011111 1122222222 2211 00111112245
Q ss_pred HHHHHHHHHhhcCCCCh--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEP--------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~--------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 172 (1088)
.|+.+++.+-+-.|... ..-.....++...|.+++|.+.+++... +|++......++.+-
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 67777766654443210 1112234556777777777777777766 665554444444443
No 468
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=54.77 E-value=27 Score=37.66 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhc
Q 001392 544 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1088)
Q Consensus 544 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~ 605 (1088)
|..+|.+++...|.....|+.+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999988888887655557777777777666
No 469
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=54.51 E-value=2.3e+02 Score=28.04 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001392 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (1088)
Q Consensus 843 ~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~ 883 (1088)
+....|.....+.+..+....+++.+...+..++++.+++.
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~e 85 (175)
T PRK14472 45 SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAE 85 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555544444555555443
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.21 E-value=1.7e+02 Score=33.12 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
...+..+++.++|..|..+|..+...-|.... ...+..|..+|..-++.+|...++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455566666777777777666664222211 12333566677788888888888877654
No 471
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=54.11 E-value=1.2e+02 Score=28.19 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=52.7
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHHHhc-----------CCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAAS-----------GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~~~p-----------~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
...++..+++..|+.+....+++.+-.... +++...+..++..++++|...|++..|+++.....+.|+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 445566777788888887777777655442 222222456677777777777888888888777777776
Q ss_pred CCCCHHHHHHHH
Q 001392 746 YNTDAQILLYLA 757 (1088)
Q Consensus 746 ~~~~~~~l~~La 757 (1088)
-+-...++..|-
T Consensus 84 I~i~~~~W~~Ll 95 (126)
T PF12921_consen 84 IPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHH
Confidence 554455555443
No 472
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=53.64 E-value=2.4e+02 Score=30.08 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 001392 889 ARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW 927 (1088)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1088)
......+++-+.+++|+++.+++...+.+. +.+..+.|
T Consensus 184 ~e~l~~qe~~l~~~rr~r~~ElR~l~~kka-~~q~~e~w 221 (340)
T KOG3756|consen 184 REQLEKQERELLEERRARQTELRLLEQKKA-LAQLFEEW 221 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333344444445666666666665555443 34477778
No 473
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=53.12 E-value=10 Score=41.76 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=13.4
Q ss_pred hhhhhhHHHhcCCCCCCCCCC
Q 001392 1011 EENANDRLAAAGLEDSDVDDE 1031 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~ 1031 (1088)
++.++-.|-+--|.|+|+|+.
T Consensus 90 ~e~~e~~~~~~~l~~~~~de~ 110 (807)
T KOG0066|consen 90 DEKPEKSLPANDLDDEDDDEA 110 (807)
T ss_pred ccchhhcCcccccCCCCchhh
Confidence 345556666777887766644
No 474
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=53.02 E-value=1.8e+02 Score=33.30 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHH
Q 001392 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 751 (1088)
Q Consensus 672 p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~ 751 (1088)
|-+....-.++.......+.+.+..++-+.+... .+.+ ..+.+...+...|+..|..+.++.++..=+. |+--+|.-
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~-~~~~-~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~ 139 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP-NCSY-LLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNF 139 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc-cccc-ccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChh
Confidence 4344444444444444555666666666665532 1111 1123333555566666777777776655443 23344555
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRA 776 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~a 776 (1088)
....|...+.+.|++..|.++.-.+
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEM 164 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHH
Confidence 6666666677777777766665443
No 475
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.84 E-value=21 Score=23.57 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHH
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQE 703 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~ 703 (1088)
.++.+..++.+.|+++.|..+|..+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555555566666666666665554
No 476
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.63 E-value=95 Score=25.67 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC
Q 001392 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (1088)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~ 749 (1088)
+++|+.++.++++.+ ..|+|++|+.+|..++..|-.-.+
T Consensus 3 l~kai~Lv~~A~~eD--------------------~~gny~eA~~lY~~ale~~~~ekn 41 (75)
T cd02680 3 LERAHFLVTQAFDED--------------------EKGNAEEAIELYTEAVELCINTSN 41 (75)
T ss_pred HHHHHHHHHHHHHhh--------------------HhhhHHHHHHHHHHHHHHHHHhcC
Confidence 356666666665543 348899999999999988754333
No 477
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.13 E-value=6.3e+02 Score=32.52 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALG 383 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la 383 (1088)
|....+.+...+-.+.+.++-..|++..+. .|..+..+..+-..+..+|.+-+|...+ -.+|+.. ..+..+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHH
Confidence 333444555556666666666666664432 2333333444445555566666554432 2244422 3445555
Q ss_pred HHHHhcCCHH------------HHHH-HHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHH-HHHHHHHHH
Q 001392 384 HIYVQLGQIE------------KAQE-LLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALD-AFKTARTLL 439 (1088)
Q Consensus 384 ~~~~~~g~~~------------~A~~-~~~k~l~~~p~~~~~~~~la~l~--~~~~~~~A~~-~~~~a~~~~ 439 (1088)
.+++..|.++ +... +++.+-+..|....-++.+-..+ ..+++.+|-. .|+.+.++-
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 5555555433 2223 34444444444444444444444 6677766654 455555553
No 478
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=52.12 E-value=56 Score=26.42 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001392 877 QEAARQAALAEEARRKAEEQK 897 (1088)
Q Consensus 877 ~e~~r~~~~~~~~~~~~~~~~ 897 (1088)
+-+.++...+++.+++++++.
T Consensus 22 Lka~k~eLk~~ee~r~e~e~~ 42 (70)
T PF13025_consen 22 LKAKKQELKAEEEKRKEEERA 42 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333333333444444443333
No 479
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=52.05 E-value=99 Score=36.38 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q 001392 917 EEHFQRVKEQW 927 (1088)
Q Consensus 917 ~~~~~~~~~~~ 927 (1088)
|++-++..+..
T Consensus 365 E~rkkr~~aei 375 (811)
T KOG4364|consen 365 ELRKKRHEAEI 375 (811)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 480
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.00 E-value=4e+02 Score=30.11 Aligned_cols=68 Identities=28% Similarity=0.165 Sum_probs=49.5
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc---CCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKY---QDY--VDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 591 (1088)
.+..+..++.++.+.|.+++|.+++...+..+ |.+ ..+...+.......+....|+.+++-++..+-.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 45677778888999999999999988887643 332 334455556677778888899888888666533
No 481
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=51.93 E-value=17 Score=39.28 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
-..+.-.++.+++..|..-+.+++..... ....... ++ .............+..++
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~---~s~~~~~------------------e~---~~~~~~~~~~r~~~~~n~ 281 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSE---QSRDREK------------------EQ---ENRIPPLRELRFSIRRNL 281 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcc---ccccccc------------------cc---ccccccccccccccccch
Confidence 34567788899999999999888763210 0000000 00 000111233344566678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhh
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~ 602 (1088)
+.+-...+.+..|+..-..++..++....++++.+..+....++++|+..+..+....|++..+...+...
T Consensus 282 ~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 282 AAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred HHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 88888899999998887777777888889999999999999999999999999999999988766555444
No 482
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=51.84 E-value=2e+02 Score=30.58 Aligned_cols=6 Identities=67% Similarity=0.927 Sum_probs=2.5
Q ss_pred hcCCCC
Q 001392 1020 AAGLED 1025 (1088)
Q Consensus 1020 ~~~~~~ 1025 (1088)
+++|.|
T Consensus 258 ~aaldD 263 (387)
T COG3064 258 AAALDD 263 (387)
T ss_pred HhhHHH
Confidence 334444
No 483
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.82 E-value=1.4e+02 Score=34.96 Aligned_cols=133 Identities=20% Similarity=0.191 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
+....++..+..+|-.++|+.+- .+|+. .+ .+.++.|+++.|..+..++ ++..-|..||.+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s--------~D~d~---rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS--------TDPDQ---RF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC--------CChhh---hh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHH
Confidence 55667777788888888776543 22222 22 3456788888887765544 567789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001392 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (1088)
....+++..|.++|.++... .. |-.++ ..|+.+.-... -......+ ..+.--.+|+..|++
T Consensus 676 al~~~~l~lA~EC~~~a~d~-----~~---LlLl~t~~g~~~~l~~l----a~~~~~~g------~~N~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARDL-----GS---LLLLYTSSGNAEGLAVL----ASLAKKQG------KNNLAFLAYFLSGDY 737 (794)
T ss_pred HhhcccchhHHHHHHhhcch-----hh---hhhhhhhcCChhHHHHH----HHHHHhhc------ccchHHHHHHHcCCH
Confidence 99999999999999987432 22 22333 34443321111 11111111 122233467888999
Q ss_pred HHHHHHHHHHH
Q 001392 465 ESAHQSFKDAL 475 (1088)
Q Consensus 465 ~~A~~~l~~al 475 (1088)
+++.+++.+.-
T Consensus 738 ~~C~~lLi~t~ 748 (794)
T KOG0276|consen 738 EECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhcC
Confidence 99998887653
No 484
>PLN03086 PRLI-interacting factor K; Provisional
Probab=51.43 E-value=1.1e+02 Score=36.36 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001392 867 EREEQQNRQRQEAARQAALA 886 (1088)
Q Consensus 867 ~~~e~~~~~k~e~~r~~~~~ 886 (1088)
++.+.|++.|.+.||...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (567)
T PLN03086 10 EKLEREQRERKQRAKLKLER 29 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544433
No 485
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=50.94 E-value=99 Score=35.34 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHhhhccCchh
Q 001392 856 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL-LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS 934 (1088)
Q Consensus 856 l~~~~~~~~~~~~~e~~~~~k~e~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1088)
.++-.....+++.-+.. ..++++.|+.|++++.+|..|+..+.| .+..-.+++++|.+.+..++...-...-..-.+.
T Consensus 594 ksqdRks~srekr~~~s-fdk~kE~Rr~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmEr 672 (940)
T KOG4661|consen 594 KSQDRKSRSREKRRERS-FDKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMER 672 (940)
T ss_pred hhhhhHHHHHHhhhhhh-HHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhc
Q 001392 935 KRRER 939 (1088)
Q Consensus 935 ~~~~~ 939 (1088)
.|.++
T Consensus 673 ERLEr 677 (940)
T KOG4661|consen 673 ERLER 677 (940)
T ss_pred HHHHH
No 486
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=50.75 E-value=98 Score=34.91 Aligned_cols=9 Identities=100% Similarity=1.176 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001392 887 EEARRKAEE 895 (1088)
Q Consensus 887 ~~~~~~~~~ 895 (1088)
+|++|+++|
T Consensus 423 eearrkaee 431 (708)
T KOG3654|consen 423 EEARRKAEE 431 (708)
T ss_pred HHHHHhhHh
Confidence 333444333
No 487
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.70 E-value=2.1e+02 Score=32.46 Aligned_cols=62 Identities=21% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcH--HHHHHHH--HHHHHcCChHHHHHHHHHHHHH
Q 001392 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYV--DAYLRLA--AIAKARNNLQLSIELVNEALKV 588 (1088)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la--~~~~~~g~~~~A~~~l~~al~~ 588 (1088)
.....+..+...++|..|..++..+...-|... ..+..++ ..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334556778899999999999999988634333 3444443 3455778899999999987765
No 488
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=49.99 E-value=2.5e+02 Score=27.31 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-
Q 001392 838 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQ- 916 (1088)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 916 (1088)
+++-......|...+...+..+....+++++...+...++..+|+....--..-+++-++..++...+.+++..+...+
T Consensus 30 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a 109 (164)
T PRK14471 30 WKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQA 109 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhc
Q 001392 917 EEHFQRVKEQWRS 929 (1088)
Q Consensus 917 ~~~~~~~~~~~~~ 929 (1088)
...+...++....
T Consensus 110 ~~~i~~ek~~a~~ 122 (164)
T PRK14471 110 KASIESEKNAAMA 122 (164)
T ss_pred HHHHHHHHHHHHH
No 489
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=49.34 E-value=11 Score=44.35 Aligned_cols=107 Identities=26% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCccc-------cccccccccCCcccccccCcCccccchhhhhcccCCCCCCcchhccCCCCCCCCCCCCCCchhhhhh
Q 001392 942 NDDDEV-------GHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENA 1014 (1088)
Q Consensus 942 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1088)
+|+.++ ..|.++..-.|.|+++... .+.|-+.+.|-+.++.|+++-..+- ..++.+
T Consensus 172 nd~~~~~~~~~l~~~~~~~~~~~ke~k~~~~~-----~eqe~dd~~m~~~Ee~e~e~~e~~e-------~~~~~~----- 234 (822)
T KOG2141|consen 172 NDDGKLKLPKVLDSDGSKLLLDFKERKKKKEK-----EEQELDDDGMEGEEEFEDEESEDSE-------SGDEED----- 234 (822)
T ss_pred ccccccccchhhhhhHHHhhhhhhHHHHHHhh-----hhhhhhccCCccccccccccccccc-------cccccc-----
Q ss_pred hhHHHhcCCCCCCCCCCCCCCchHHHHhhhcCCCCCChhhhhcCCCCcchhccCcchhhccCCCCCCC
Q 001392 1015 NDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSNGG 1082 (1088)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1088)
..|-.|+|+++|.-.++. |+++..+-...+.+..+.++++||+.+.++-.+
T Consensus 235 -----~sgs~~~~e~e~e~~~~d------------e~~e~~~~~~d~d~i~E~~~~~i~~s~~~~~~e 285 (822)
T KOG2141|consen 235 -----DSGSEDEDESEDEKDSVD------------EEEESEEDNEDDDGISEISNSEIRDSALKKSEE 285 (822)
T ss_pred -----cccCcccchhhhhccchh------------hhhhhhhcccCCccccccccccccCCccccCCC
No 490
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.31 E-value=2.3e+02 Score=30.55 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
....+.+|..|-+.++|..|.+.|.-+-......-+... -++.....++.+|+..+... +|..+.++
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~--~kl~l~iriarlyLe~~d~v-----------eae~~inR 169 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVE--QKLLLCIRIARLYLEDDDKV-----------EAEAYINR 169 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhH--HHHHHHHHHHHHHHhcCcHH-----------HHHHHHHH
Q ss_pred H--hhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 001392 120 A--SRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLE 156 (1088)
Q Consensus 120 a--~~~~p~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~ 156 (1088)
+ +..+..++...+..-.+|.+. ++|-+|...|-++..
T Consensus 170 aSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 170 ASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.08 E-value=76 Score=32.11 Aligned_cols=76 Identities=13% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhh
Q 001392 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1088)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~ 602 (1088)
.......-+.+.+...+|+...+.-++..|.+......+-.+++-.|+|++|..-++-+-.+.|++..-...+-.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
No 492
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=49.07 E-value=1e+02 Score=28.04 Aligned_cols=63 Identities=17% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-------------AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 717 ~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-------------~~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
+..+|...++.+++-.++-.|++|+.....-.. +....+||..|...|+.+-.+++++-|-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
No 493
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=48.59 E-value=2.3e+02 Score=26.40 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCC---CHHHHhhHHHHHHhc-----------------CCchHHHHHHHHHHHHhcCCCCCCch
Q 001392 655 THLEKAKELYTRVIVQHTS---NLYAANGAGVVLAEK-----------------GQFDVSKDLFTQVQEAASGSVFVQMP 714 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~---~~~a~~~la~~l~~~-----------------g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (1088)
|..++..++..+.....|- |....+-+-.+-+.- |++..-+..|-.+ ...
T Consensus 16 G~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~----------n~~ 85 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR----------NKL 85 (161)
T ss_dssp T-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT----------T--
T ss_pred chHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh----------cch
Q ss_pred hHHHHHH-HHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 001392 715 DVWINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (1088)
Q Consensus 715 ~~~~~la-~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~ 778 (1088)
.-|+.+| .++..+|+-+.=-+.+....+. ...+|.++..+|.+|.+.|+..++-..+.+|-+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 494
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.82 E-value=78 Score=37.50 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
++++.++.+....+.-+..........+..+..+-..|..++|-.+|+..+..+|+ ..++..|..+++.|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Q ss_pred HHHH
Q 001392 185 YKRA 188 (1088)
Q Consensus 185 ~~~a 188 (1088)
++++
T Consensus 97 ~~~~ 100 (578)
T PRK15490 97 LKKV 100 (578)
T ss_pred HHHh
No 495
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=47.55 E-value=1.2e+02 Score=33.84 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-------CCCCCCHHHHHHHHHHHHHHHH
Q 001392 785 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNL-------HLHGFDEKKINTHVEYCKHLLD 857 (1088)
Q Consensus 785 ~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~ 857 (1088)
.+.||+|.++.+.+........++.+.+..+..-+..|-.+|..|...-.+ +..-++...+..-..+| |.
T Consensus 110 sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~lm---LA 186 (353)
T cd09243 110 SMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYINQC---TA 186 (353)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHHHH---HH
Q ss_pred HHHHHH
Q 001392 858 AAKIHR 863 (1088)
Q Consensus 858 ~~~~~~ 863 (1088)
+++.+.
T Consensus 187 QAQE~~ 192 (353)
T cd09243 187 EAQEVT 192 (353)
T ss_pred HHHHHH
No 496
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=47.48 E-value=3.2e+02 Score=28.84 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001392 838 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL--AEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 915 (1088)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1088)
+++-.+....|...+.+.+..+.....++++...+..++++.+++.+. -++++.+++..+.....+.+.+.+..+..-
T Consensus 27 ~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a 106 (250)
T PRK14474 27 YKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEW 106 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 001392 916 QEEHFQRVKE 925 (1088)
Q Consensus 916 ~~~~~~~~~~ 925 (1088)
+.+--.+...
T Consensus 107 ~~~ie~Ek~~ 116 (250)
T PRK14474 107 LEQLEREKQE 116 (250)
T ss_pred HHHHHHHHHH
No 497
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=47.44 E-value=3.4e+02 Score=28.58 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001392 838 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL--AEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 915 (1088)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1088)
+++-......|...+.+.+..+.....++++...+..++++++++... -++++.+++..+....++.+.+.+..+..-
T Consensus 27 ~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a 106 (246)
T TIGR03321 27 YRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKW 106 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H---HHHHHHHHHhhhc
Q 001392 916 Q---EEHFQRVKEQWRS 929 (1088)
Q Consensus 916 ~---~~~~~~~~~~~~~ 929 (1088)
+ +....+..+.++.
T Consensus 107 ~~~ie~E~~~a~~~l~~ 123 (246)
T TIGR03321 107 QEALRREQAALSDELRR 123 (246)
T ss_pred HHHHHHHHHHHHHHHHH
No 498
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=47.41 E-value=1e+02 Score=33.97 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001392 857 DAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 922 (1088)
Q Consensus 857 ~~~~~~~~~~~~~e~~~~~k~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1088)
..+.....+.++.+.+.-.|...+.+..++++.+++++.+++.++...---+|+++..+.+.+-+.
T Consensus 254 ~e~~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~eeKe~kk~~ 319 (321)
T PF07946_consen 254 PEAKKKAKKNREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSPEEQRKYEEKERKKEQ 319 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
No 499
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.13 E-value=3.8e+02 Score=28.50 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHH---hcCCHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001392 392 IEKAQELLRKAAKI--DPRDAQAFIDLGELL---ISSDTGAALDAF-KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~--~p~~~~~~~~la~l~---~~~~~~~A~~~~-~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (1088)
.++-..-+-+.+.. +|.....|+.+-.-. ....-++-++-+ ++..+.-...|.....+++.++|..|.+.++.+
T Consensus 53 ~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 53 IDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred HHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHH
Q 001392 466 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 545 (1088)
Q Consensus 466 ~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 545 (1088)
.+.++..+.+......+ ..-+..-....+|.+|..+.-..+.+
T Consensus 133 ng~~~~~~~~~~a~stg-------------------------------------~KiDv~l~kiRlg~~y~d~~vV~e~l 175 (412)
T COG5187 133 NGFEWMRRLMRDAMSTG-------------------------------------LKIDVFLCKIRLGLIYGDRKVVEESL 175 (412)
T ss_pred hHHHHHHHHHHHHHhcc-------------------------------------cchhhHHHHHHHHHhhccHHHHHHHH
Q ss_pred HHHHHHHHHcCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhh
Q 001392 546 VLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1088)
Q Consensus 546 ~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~ 604 (1088)
+....+++...+. .......|.......++.+|..++-..+........+-+.-+.-|.
T Consensus 176 E~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 176 EVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHH
No 500
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=46.91 E-value=2.5e+02 Score=26.28 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 427 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~ 427 (1088)
+...+...+.+...+.+++.++..++.++.....+..+|.+. +..+.+.++.. .++....-..+..+...+-++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHHHHHHHHHHcCcHHH
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1088)
+.-.+.+ ...+.....++... ++++.|++++
T Consensus 88 ~~~l~~k-------------~~~~~~Al~~~l~~~~d~~~a~~~~----------------------------------- 119 (140)
T smart00299 88 AVELYKK-------------DGNFKDAIVTLIEHLGNYEKAIEYF----------------------------------- 119 (140)
T ss_pred HHHHHHh-------------hcCHHHHHHHHHHcccCHHHHHHHH-----------------------------------
Q ss_pred hhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCC
Q 001392 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540 (1088)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 540 (1088)
....++..|..++..+.....
T Consensus 120 -------------~~~~~~~lw~~~~~~~l~~~~ 140 (140)
T smart00299 120 -------------VKQNNPELWAEVLKALLDKPR 140 (140)
T ss_pred -------------HhCCCHHHHHHHHHHHHccCC
Done!