Query 001392
Match_columns 1088
No_of_seqs 1399 out of 5247
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 01:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.9E-38 1.7E-42 384.0 45.2 509 193-795 80-595 (597)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3E-37 1E-41 355.2 45.8 383 346-797 3-386 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-36 4.5E-41 349.8 50.9 383 133-573 4-387 (388)
4 2xpi_A Anaphase-promoting comp 100.0 4.1E-37 1.4E-41 375.9 49.0 481 82-637 83-593 (597)
5 3fp2_A TPR repeat-containing p 100.0 3.1E-33 1.1E-37 336.6 41.1 460 128-791 25-503 (537)
6 2gw1_A Mitochondrial precursor 100.0 6.2E-33 2.1E-37 331.9 41.8 426 128-601 6-491 (514)
7 2gw1_A Mitochondrial precursor 100.0 3.1E-32 1.1E-36 325.8 44.8 439 305-793 6-492 (514)
8 3fp2_A TPR repeat-containing p 100.0 1.6E-32 5.5E-37 330.3 40.1 454 79-597 21-500 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 2.9E-30 9.8E-35 303.2 44.5 380 111-625 9-413 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 8.7E-30 3E-34 299.0 43.0 329 89-458 25-373 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 2.3E-28 7.9E-33 276.9 45.7 345 128-607 3-354 (359)
12 3ieg_A DNAJ homolog subfamily 100.0 8.6E-28 3E-32 272.2 43.0 323 83-420 3-350 (359)
13 4g1t_A Interferon-induced prot 100.0 9.1E-29 3.1E-33 292.4 35.1 393 127-625 50-462 (472)
14 4g1t_A Interferon-induced prot 100.0 3.8E-28 1.3E-32 287.0 35.9 363 306-743 52-459 (472)
15 3hym_B Cell division cycle pro 100.0 1.7E-26 5.9E-31 258.3 35.7 301 118-425 12-321 (330)
16 2xm6_A Protein corresponding t 100.0 1.3E-24 4.4E-29 257.6 47.6 392 303-783 37-471 (490)
17 2xm6_A Protein corresponding t 100.0 4.6E-24 1.6E-28 252.9 52.1 328 113-475 26-394 (490)
18 3hym_B Cell division cycle pro 99.9 3.3E-25 1.1E-29 247.8 35.4 293 83-393 22-322 (330)
19 2ooe_A Cleavage stimulation fa 99.9 2.3E-24 7.7E-29 258.3 43.6 430 117-624 2-494 (530)
20 1fch_A Peroxisomal targeting s 99.9 1.2E-25 4.2E-30 255.9 30.7 289 108-439 39-360 (368)
21 2ooe_A Cleavage stimulation fa 99.9 3.2E-23 1.1E-27 248.3 47.1 442 257-783 2-496 (530)
22 1fch_A Peroxisomal targeting s 99.9 4.6E-25 1.6E-29 251.0 28.3 311 137-476 34-358 (368)
23 4eqf_A PEX5-related protein; a 99.9 3.5E-24 1.2E-28 243.6 28.5 279 114-436 47-354 (365)
24 4eqf_A PEX5-related protein; a 99.9 2.9E-24 9.9E-29 244.3 26.7 294 149-476 48-355 (365)
25 2h6f_A Protein farnesyltransfe 99.9 4.2E-24 1.4E-28 241.0 25.2 261 120-420 89-363 (382)
26 3cv0_A Peroxisome targeting si 99.9 1.8E-23 6.1E-28 233.3 29.9 271 127-441 20-318 (327)
27 2h6f_A Protein farnesyltransfe 99.9 6.7E-24 2.3E-28 239.3 26.2 259 517-797 89-366 (382)
28 3cv0_A Peroxisome targeting si 99.9 2.2E-23 7.6E-28 232.5 25.8 273 448-782 21-318 (327)
29 1xi4_A Clathrin heavy chain; a 99.9 6.2E-19 2.1E-23 215.4 62.0 294 36-400 981-1274(1630)
30 1xi4_A Clathrin heavy chain; a 99.9 4.3E-19 1.5E-23 216.8 57.8 359 311-777 1055-1426(1630)
31 3e4b_A ALGK; tetratricopeptide 99.9 2.2E-22 7.4E-27 234.7 24.8 386 309-779 7-421 (452)
32 3uq3_A Heat shock protein STI1 99.9 6.7E-22 2.3E-26 212.1 26.6 240 524-793 4-256 (258)
33 3u4t_A TPR repeat-containing p 99.9 5.5E-22 1.9E-26 215.0 25.9 253 127-386 2-265 (272)
34 3uq3_A Heat shock protein STI1 99.9 2.8E-21 9.5E-26 207.3 27.6 240 127-418 4-255 (258)
35 3u4t_A TPR repeat-containing p 99.9 4.8E-22 1.6E-26 215.5 21.8 250 524-793 2-264 (272)
36 3e4b_A ALGK; tetratricopeptide 99.9 1.1E-21 3.7E-26 228.7 25.8 317 132-476 7-350 (452)
37 2pl2_A Hypothetical conserved 99.9 3.2E-21 1.1E-25 200.9 24.4 199 125-331 2-211 (217)
38 2pl2_A Hypothetical conserved 99.9 3.9E-21 1.3E-25 200.3 23.4 197 83-295 5-212 (217)
39 3sf4_A G-protein-signaling mod 99.9 6.7E-21 2.3E-25 219.6 25.1 316 126-468 7-367 (406)
40 3mkr_A Coatomer subunit epsilo 99.9 1.1E-19 3.8E-24 198.2 32.8 157 48-232 7-165 (291)
41 3mkr_A Coatomer subunit epsilo 99.9 3E-20 1E-24 202.8 27.4 261 135-413 6-272 (291)
42 3sf4_A G-protein-signaling mod 99.9 4.8E-21 1.6E-25 220.8 21.7 282 339-670 6-336 (406)
43 4a1s_A PINS, partner of inscut 99.8 3E-20 1E-24 214.8 22.3 279 448-782 48-375 (411)
44 3ro2_A PINS homolog, G-protein 99.8 7.7E-20 2.6E-24 204.2 22.8 283 448-782 5-335 (338)
45 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.8E-19 6.1E-24 195.4 24.1 248 106-365 17-269 (275)
46 4a1s_A PINS, partner of inscut 99.8 1.3E-19 4.4E-24 209.5 23.7 286 159-478 45-373 (411)
47 2q7f_A YRRB protein; TPR, prot 99.8 3.4E-19 1.2E-23 189.1 22.5 215 127-385 22-236 (243)
48 3ro2_A PINS homolog, G-protein 99.8 5.9E-19 2E-23 197.0 25.1 282 162-477 5-332 (338)
49 1ouv_A Conserved hypothetical 99.8 7.7E-18 2.6E-22 182.5 32.2 233 124-412 2-258 (273)
50 2ond_A Cleavage stimulation fa 99.8 1.4E-18 4.7E-23 192.0 26.6 256 111-384 33-305 (308)
51 1ouv_A Conserved hypothetical 99.8 8.7E-18 3E-22 182.1 32.4 226 91-376 7-256 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.1E-19 3.8E-24 197.0 16.7 231 135-374 12-247 (275)
53 3vtx_A MAMA; tetratricopeptide 99.8 1.2E-18 4.2E-23 176.2 23.3 171 83-268 5-175 (184)
54 4e6h_A MRNA 3'-END-processing 99.8 7.1E-16 2.4E-20 184.9 50.8 451 112-630 50-578 (679)
55 4abn_A Tetratricopeptide repea 99.8 1.8E-18 6.2E-23 202.8 27.7 238 83-328 54-315 (474)
56 2q7f_A YRRB protein; TPR, prot 99.8 1.3E-18 4.3E-23 184.7 24.0 216 83-316 23-238 (243)
57 2ho1_A Type 4 fimbrial biogene 99.8 3.6E-18 1.2E-22 182.4 27.1 213 123-379 31-246 (252)
58 2vq2_A PILW, putative fimbrial 99.8 7.8E-18 2.7E-22 176.0 28.4 141 124-268 4-147 (225)
59 2vq2_A PILW, putative fimbrial 99.8 1.1E-17 3.8E-22 174.8 29.5 218 158-416 4-222 (225)
60 2ho1_A Type 4 fimbrial biogene 99.8 6.2E-18 2.1E-22 180.7 27.3 211 199-416 39-249 (252)
61 3vtx_A MAMA; tetratricopeptide 99.8 7.5E-18 2.6E-22 170.4 25.0 168 126-297 3-170 (184)
62 2ond_A Cleavage stimulation fa 99.8 2.4E-17 8.3E-22 181.9 29.6 228 542-787 33-278 (308)
63 4abn_A Tetratricopeptide repea 99.8 4.6E-18 1.6E-22 199.3 24.0 221 142-399 82-315 (474)
64 3ulq_A Response regulator aspa 99.8 2.4E-17 8.1E-22 188.4 28.8 167 274-440 109-295 (383)
65 3ulq_A Response regulator aspa 99.8 1E-17 3.4E-22 191.6 23.6 247 306-591 104-371 (383)
66 4i17_A Hypothetical protein; T 99.8 5.1E-17 1.8E-21 170.7 27.0 153 125-281 4-166 (228)
67 4e6h_A MRNA 3'-END-processing 99.8 9.6E-15 3.3E-19 175.1 49.2 476 214-789 49-580 (679)
68 4i17_A Hypothetical protein; T 99.8 3.4E-17 1.2E-21 172.0 23.5 207 84-315 8-224 (228)
69 3qky_A Outer membrane assembly 99.8 3.8E-17 1.3E-21 175.6 22.8 218 121-395 8-251 (261)
70 4gyw_A UDP-N-acetylglucosamine 99.7 3.8E-17 1.3E-21 198.6 23.0 171 123-297 4-174 (723)
71 1b89_A Protein (clathrin heavy 99.7 1.2E-17 4.2E-22 185.1 16.4 403 140-629 15-420 (449)
72 4gyw_A UDP-N-acetylglucosamine 99.7 4E-17 1.4E-21 198.4 21.5 173 79-266 5-177 (723)
73 3qky_A Outer membrane assembly 99.7 1.8E-16 6E-21 170.4 23.4 213 155-427 8-250 (261)
74 3nf1_A KLC 1, kinesin light ch 99.7 1.1E-17 3.6E-22 184.8 12.9 248 520-782 22-310 (311)
75 3q15_A PSP28, response regulat 99.7 2.6E-16 8.9E-21 179.3 24.4 240 344-622 103-365 (378)
76 3q15_A PSP28, response regulat 99.7 2.9E-16 9.8E-21 179.0 23.5 239 526-780 102-366 (378)
77 3nf1_A KLC 1, kinesin light ch 99.7 5.5E-17 1.9E-21 179.1 16.8 252 339-625 24-310 (311)
78 3dra_A Protein farnesyltransfe 99.7 3.8E-15 1.3E-19 160.8 30.5 220 112-332 51-285 (306)
79 1b89_A Protein (clathrin heavy 99.7 6.5E-18 2.2E-22 187.2 8.7 329 351-777 12-353 (449)
80 1hz4_A MALT regulatory protein 99.7 5.1E-15 1.8E-19 168.3 29.8 279 129-442 15-326 (373)
81 3dra_A Protein farnesyltransfe 99.7 3.7E-15 1.3E-19 160.9 26.9 243 139-419 43-302 (306)
82 1hz4_A MALT regulatory protein 99.7 7.1E-15 2.4E-19 167.1 30.3 290 163-483 15-328 (373)
83 4ga2_A E3 SUMO-protein ligase 99.7 1.1E-16 3.8E-21 155.4 12.9 139 107-246 10-149 (150)
84 4ga2_A E3 SUMO-protein ligase 99.7 8.1E-17 2.8E-21 156.4 10.4 146 134-283 3-149 (150)
85 1qqe_A Vesicular transport pro 99.7 1.3E-15 4.3E-20 166.6 20.1 256 112-420 3-284 (292)
86 3as5_A MAMA; tetratricopeptide 99.7 3.9E-15 1.3E-19 149.9 22.3 172 82-268 7-178 (186)
87 3urz_A Uncharacterized protein 99.7 2.1E-15 7E-20 155.7 18.6 166 127-295 3-184 (208)
88 2pzi_A Probable serine/threoni 99.7 1.2E-15 4E-20 187.1 19.7 191 122-323 388-586 (681)
89 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.8E-15 2E-19 154.4 21.5 207 127-409 3-217 (225)
90 1qqe_A Vesicular transport pro 99.7 3E-15 1E-19 163.5 20.1 233 391-685 32-284 (292)
91 3as5_A MAMA; tetratricopeptide 99.6 8.3E-15 2.8E-19 147.5 21.6 167 128-298 8-174 (186)
92 4gco_A Protein STI-1; structur 99.6 2.1E-15 7E-20 141.3 15.2 121 119-240 4-124 (126)
93 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.9E-15 2E-19 154.4 20.3 210 524-785 3-219 (225)
94 2pzi_A Probable serine/threoni 99.6 2.7E-15 9.4E-20 183.8 19.5 172 107-283 404-583 (681)
95 3urz_A Uncharacterized protein 99.6 1.5E-14 5.1E-19 149.2 20.8 177 448-683 4-198 (208)
96 3dss_A Geranylgeranyl transfer 99.6 3E-13 1E-17 146.4 30.6 245 112-420 48-319 (331)
97 3edt_B KLC 2, kinesin light ch 99.6 6.6E-15 2.2E-19 159.6 17.6 153 107-263 21-198 (283)
98 3dss_A Geranylgeranyl transfer 99.6 3.3E-13 1.1E-17 146.1 28.3 250 139-456 40-317 (331)
99 3q7a_A Farnesyltransferase alp 99.6 4.9E-13 1.7E-17 145.3 29.3 172 112-284 72-258 (349)
100 3edt_B KLC 2, kinesin light ch 99.6 2.4E-14 8.1E-19 155.1 19.1 212 265-477 40-281 (283)
101 4gco_A Protein STI-1; structur 99.6 1.3E-14 4.6E-19 135.7 13.9 122 666-794 4-125 (126)
102 3gyz_A Chaperone protein IPGC; 99.6 9.9E-15 3.4E-19 140.7 13.0 119 112-231 20-138 (151)
103 2r5s_A Uncharacterized protein 99.6 1.7E-14 5.8E-19 144.4 14.1 168 124-296 2-172 (176)
104 2r5s_A Uncharacterized protein 99.6 1.1E-14 3.6E-19 145.9 12.0 171 556-743 3-173 (176)
105 3q7a_A Farnesyltransferase alp 99.6 6.1E-13 2.1E-17 144.5 26.4 249 520-787 49-340 (349)
106 3qou_A Protein YBBN; thioredox 99.6 8.7E-14 3E-18 151.3 19.2 169 124-296 113-283 (287)
107 2vsy_A XCC0866; transferase, g 99.5 9.7E-14 3.3E-18 167.3 19.1 165 107-275 2-169 (568)
108 2vgx_A Chaperone SYCD; alterna 99.5 6.5E-14 2.2E-18 135.3 12.5 121 113-234 6-126 (148)
109 3qou_A Protein YBBN; thioredox 99.5 3.9E-13 1.3E-17 146.2 19.4 174 553-743 111-284 (287)
110 3gyz_A Chaperone protein IPGC; 99.5 5E-14 1.7E-18 135.8 10.3 123 655-784 16-138 (151)
111 1p5q_A FKBP52, FK506-binding p 99.5 8.4E-15 2.9E-19 163.1 4.7 183 108-295 79-292 (336)
112 2xcb_A PCRH, regulatory protei 99.5 1.9E-13 6.6E-18 131.1 13.0 126 114-240 4-129 (142)
113 2ifu_A Gamma-SNAP; membrane fu 99.5 3.7E-13 1.3E-17 148.0 16.7 166 421-625 48-226 (307)
114 2ifu_A Gamma-SNAP; membrane fu 99.5 2E-12 6.9E-17 142.2 21.3 230 107-397 4-253 (307)
115 4f3v_A ESX-1 secretion system 99.5 3.6E-13 1.2E-17 141.4 13.5 211 131-383 10-248 (282)
116 2fo7_A Synthetic consensus TPR 99.4 4.8E-12 1.7E-16 119.3 19.6 134 129-266 2-135 (136)
117 3rjv_A Putative SEL1 repeat pr 99.4 2.7E-12 9.2E-17 132.5 19.0 179 542-743 3-197 (212)
118 2vsy_A XCC0866; transferase, g 99.4 1.6E-12 5.3E-17 156.7 19.8 165 141-312 2-169 (568)
119 2vgx_A Chaperone SYCD; alterna 99.4 6.3E-13 2.2E-17 128.3 12.9 121 661-788 7-127 (148)
120 2uy1_A Cleavage stimulation fa 99.4 1.7E-10 5.9E-15 134.6 35.9 209 358-621 195-412 (493)
121 4f3v_A ESX-1 secretion system 99.4 7.6E-13 2.6E-17 139.0 14.0 206 201-418 11-249 (282)
122 1p5q_A FKBP52, FK506-binding p 99.4 3.8E-13 1.3E-17 149.7 11.9 150 110-263 129-294 (336)
123 2fo7_A Synthetic consensus TPR 99.4 7.6E-12 2.6E-16 117.9 18.9 134 85-230 3-136 (136)
124 3upv_A Heat shock protein STI1 99.4 2.7E-12 9.3E-17 120.1 15.3 116 126-242 2-123 (126)
125 3rjv_A Putative SEL1 repeat pr 99.4 5.7E-12 2E-16 130.0 19.1 173 112-296 4-196 (212)
126 2e2e_A Formate-dependent nitri 99.4 2.1E-12 7.2E-17 129.1 14.2 130 107-237 23-155 (177)
127 2c2l_A CHIP, carboxy terminus 99.4 1.5E-12 5.3E-17 140.8 13.4 197 125-333 1-198 (281)
128 2xcb_A PCRH, regulatory protei 99.4 2E-12 6.8E-17 124.0 12.6 125 662-793 5-129 (142)
129 2c2l_A CHIP, carboxy terminus 99.4 3.1E-12 1E-16 138.5 14.3 198 447-706 3-201 (281)
130 1a17_A Serine/threonine protei 99.4 2.8E-11 9.4E-16 119.1 20.1 132 128-263 13-146 (166)
131 3mv2_B Coatomer subunit epsilo 99.4 8.9E-12 3E-16 132.6 17.3 229 526-790 46-293 (310)
132 3sz7_A HSC70 cochaperone (SGT) 99.4 5.6E-12 1.9E-16 124.2 14.6 118 124-242 7-124 (164)
133 1dce_A Protein (RAB geranylger 99.4 1.4E-11 4.9E-16 146.0 20.1 175 111-286 46-244 (567)
134 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.4E-11 8.1E-16 125.5 18.4 131 130-267 8-154 (213)
135 2lni_A Stress-induced-phosphop 99.3 9.7E-12 3.3E-16 117.1 14.1 121 124-245 12-132 (133)
136 2e2e_A Formate-dependent nitri 99.3 5E-12 1.7E-16 126.3 12.5 131 137-271 19-152 (177)
137 2vyi_A SGTA protein; chaperone 99.3 1.8E-11 6.3E-16 114.6 15.7 122 124-246 8-129 (131)
138 3upv_A Heat shock protein STI1 99.3 2E-11 6.9E-16 114.1 15.5 116 159-278 1-122 (126)
139 2uy1_A Cleavage stimulation fa 99.3 3.1E-09 1.1E-13 124.0 37.5 207 542-778 196-412 (493)
140 1hh8_A P67PHOX, NCF-2, neutrop 99.3 4.4E-11 1.5E-15 123.4 19.4 133 84-230 7-154 (213)
141 2fbn_A 70 kDa peptidylprolyl i 99.3 3.6E-12 1.2E-16 130.1 10.6 134 112-246 22-171 (198)
142 1a17_A Serine/threonine protei 99.3 5.2E-11 1.8E-15 117.1 18.5 135 80-226 10-146 (166)
143 1na0_A Designed protein CTPR3; 99.3 6.9E-11 2.3E-15 109.6 18.0 120 124-244 4-124 (125)
144 2fbn_A 70 kDa peptidylprolyl i 99.3 3.4E-12 1.1E-16 130.3 9.7 156 130-288 6-176 (198)
145 3mv2_B Coatomer subunit epsilo 99.3 1.8E-10 6E-15 122.6 22.8 256 128-413 14-290 (310)
146 4gcn_A Protein STI-1; structur 99.3 3.2E-11 1.1E-15 112.8 15.1 106 128-234 8-119 (127)
147 3q49_B STIP1 homology and U bo 99.3 4.5E-11 1.6E-15 113.4 16.1 120 123-243 4-128 (137)
148 3sz7_A HSC70 cochaperone (SGT) 99.3 4.7E-11 1.6E-15 117.5 16.3 116 671-793 7-122 (164)
149 1hxi_A PEX5, peroxisome target 99.3 2.3E-11 7.8E-16 112.7 12.8 103 129-232 18-120 (121)
150 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3.2E-13 1.1E-17 157.1 0.2 176 109-289 201-406 (457)
151 2qfc_A PLCR protein; TPR, HTH, 99.3 9.8E-11 3.4E-15 127.7 19.9 193 20-226 54-266 (293)
152 1elw_A TPR1-domain of HOP; HOP 99.3 1E-10 3.4E-15 107.3 16.6 114 127-241 3-116 (118)
153 2qfc_A PLCR protein; TPR, HTH, 99.3 1.9E-10 6.5E-15 125.4 21.7 182 555-749 71-272 (293)
154 2lni_A Stress-induced-phosphop 99.3 6E-11 2E-15 111.6 15.3 122 158-283 12-133 (133)
155 2vyi_A SGTA protein; chaperone 99.3 5.4E-11 1.9E-15 111.4 14.6 123 158-284 8-130 (131)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 6.4E-12 2.2E-16 146.1 9.4 142 110-255 250-406 (457)
157 3rkv_A Putative peptidylprolyl 99.2 6.7E-11 2.3E-15 116.1 14.4 116 128-244 11-145 (162)
158 3u3w_A Transcriptional activat 99.2 1E-10 3.6E-15 127.5 17.3 169 564-745 80-268 (293)
159 2hr2_A Hypothetical protein; a 99.2 3.8E-11 1.3E-15 113.7 11.8 106 128-234 11-139 (159)
160 4gcn_A Protein STI-1; structur 99.2 8.2E-11 2.8E-15 110.0 13.9 104 674-782 7-115 (127)
161 2dba_A Smooth muscle cell asso 99.2 1.3E-10 4.5E-15 111.7 15.4 120 122-242 22-144 (148)
162 2xev_A YBGF; tetratricopeptide 99.2 2.4E-10 8.3E-15 107.0 16.5 114 129-242 3-121 (129)
163 1na0_A Designed protein CTPR3; 99.2 4.6E-10 1.6E-14 103.9 17.9 121 158-282 4-125 (125)
164 3q49_B STIP1 homology and U bo 99.2 2E-10 6.7E-15 108.9 14.9 118 156-277 3-125 (137)
165 1hxi_A PEX5, peroxisome target 99.2 1.6E-10 5.6E-15 106.8 13.8 102 163-268 18-119 (121)
166 2kck_A TPR repeat; tetratricop 99.2 1.2E-10 4.2E-15 105.6 12.5 107 123-230 1-110 (112)
167 1dce_A Protein (RAB geranylger 99.2 7.8E-10 2.7E-14 131.1 22.8 173 144-323 45-244 (567)
168 3rkv_A Putative peptidylprolyl 99.2 2.5E-10 8.6E-15 112.0 15.6 122 674-797 10-145 (162)
169 4b4t_Q 26S proteasome regulato 99.2 1.3E-09 4.4E-14 126.2 24.2 175 378-589 57-246 (434)
170 3u3w_A Transcriptional activat 99.2 2.2E-10 7.4E-15 124.9 16.6 170 275-444 82-272 (293)
171 3gw4_A Uncharacterized protein 99.2 2.1E-10 7.3E-15 117.0 14.8 165 604-782 3-179 (203)
172 1elw_A TPR1-domain of HOP; HOP 99.1 8.9E-10 3.1E-14 100.8 16.4 114 161-278 3-116 (118)
173 4b4t_Q 26S proteasome regulato 99.1 2.7E-09 9.3E-14 123.5 24.2 204 127-333 3-244 (434)
174 2hr2_A Hypothetical protein; a 99.1 2.2E-10 7.4E-15 108.6 11.9 106 162-270 11-138 (159)
175 1zu2_A Mitochondrial import re 99.1 1.6E-10 5.6E-15 109.1 10.6 105 104-232 12-126 (158)
176 3gw4_A Uncharacterized protein 99.1 6.8E-10 2.3E-14 113.3 16.0 158 317-477 4-176 (203)
177 2xev_A YBGF; tetratricopeptide 99.1 1.2E-09 4E-14 102.2 15.9 114 163-279 3-121 (129)
178 1elr_A TPR2A-domain of HOP; HO 99.1 7.2E-10 2.5E-14 103.6 14.4 118 127-245 3-126 (131)
179 2if4_A ATFKBP42; FKBP-like, al 99.1 9.2E-11 3.2E-15 130.4 8.9 138 127-268 178-333 (338)
180 2dba_A Smooth muscle cell asso 99.1 1.5E-09 5.1E-14 104.1 16.0 119 157-278 23-143 (148)
181 1wao_1 Serine/threonine protei 99.1 4.5E-11 1.5E-15 139.5 5.0 136 128-267 6-154 (477)
182 1elr_A TPR2A-domain of HOP; HO 99.1 1.2E-09 4.1E-14 102.1 13.9 119 673-797 2-125 (131)
183 2kck_A TPR repeat; tetratricop 99.1 1.7E-09 5.8E-14 97.8 13.5 106 521-626 2-110 (112)
184 1wao_1 Serine/threonine protei 99.1 2.2E-11 7.6E-16 142.0 0.9 126 107-233 19-157 (477)
185 1ihg_A Cyclophilin 40; ppiase 99.0 1.6E-09 5.6E-14 121.5 15.7 117 129-246 224-356 (370)
186 3k9i_A BH0479 protein; putativ 99.0 3.3E-10 1.1E-14 104.1 8.4 88 108-195 4-94 (117)
187 2if4_A ATFKBP42; FKBP-like, al 99.0 2.4E-10 8.2E-15 127.0 8.7 141 80-232 176-334 (338)
188 1zu2_A Mitochondrial import re 99.0 6.6E-10 2.3E-14 105.0 9.9 112 141-277 15-134 (158)
189 3k9i_A BH0479 protein; putativ 99.0 3.5E-10 1.2E-14 103.9 8.0 95 140-235 2-99 (117)
190 3ro3_A PINS homolog, G-protein 99.0 2.5E-09 8.4E-14 104.2 13.2 141 629-782 10-161 (164)
191 1ihg_A Cyclophilin 40; ppiase 99.0 4E-09 1.4E-13 118.4 14.4 124 162-289 223-362 (370)
192 3ro3_A PINS homolog, G-protein 98.9 5.4E-09 1.9E-13 101.7 12.3 136 81-227 7-159 (164)
193 2kat_A Uncharacterized protein 98.8 2E-08 6.8E-13 91.7 12.3 99 659-762 3-101 (115)
194 2kat_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 89.9 12.3 83 112-194 3-85 (115)
195 4g26_A Pentatricopeptide repea 98.8 2.1E-07 7.1E-12 108.4 21.5 187 595-790 28-215 (501)
196 1na3_A Designed protein CTPR2; 98.7 6.5E-08 2.2E-12 83.6 11.6 82 128-210 9-90 (91)
197 1na3_A Designed protein CTPR2; 98.7 9E-08 3.1E-12 82.7 11.7 84 160-244 7-90 (91)
198 4g26_A Pentatricopeptide repea 98.7 9.2E-07 3.2E-11 103.0 22.6 184 561-762 28-222 (501)
199 2l6j_A TPR repeat-containing p 98.7 1.1E-08 3.7E-13 92.6 4.8 91 128-218 4-99 (111)
200 1klx_A Cysteine rich protein B 98.7 3.1E-07 1.1E-11 86.7 15.0 120 655-791 9-136 (138)
201 3ma5_A Tetratricopeptide repea 98.7 8.2E-08 2.8E-12 85.0 10.0 87 671-762 3-89 (100)
202 2l6j_A TPR repeat-containing p 98.6 2.6E-08 9E-13 89.9 6.0 96 524-619 3-104 (111)
203 3ma5_A Tetratricopeptide repea 98.6 8E-08 2.7E-12 85.1 8.6 71 124-194 3-73 (100)
204 1klx_A Cysteine rich protein B 98.6 1.3E-06 4.5E-11 82.4 16.1 121 107-238 8-136 (138)
205 2kc7_A BFR218_protein; tetratr 98.6 1E-07 3.5E-12 84.1 7.8 64 132-195 4-68 (99)
206 2kc7_A BFR218_protein; tetratr 98.5 1.6E-07 5.5E-12 82.8 8.2 92 165-268 3-95 (99)
207 3u64_A Protein TP_0956; tetrat 98.5 1.4E-05 4.7E-10 82.6 22.9 106 520-625 147-272 (301)
208 3ly7_A Transcriptional activat 98.5 2.9E-06 9.8E-11 91.8 18.2 144 120-268 186-344 (372)
209 3ly7_A Transcriptional activat 98.5 2.1E-06 7.2E-11 92.8 15.5 123 108-232 213-345 (372)
210 2v5f_A Prolyl 4-hydroxylase su 98.4 2.6E-06 8.8E-11 75.7 12.1 81 713-793 4-89 (104)
211 3bee_A Putative YFRE protein; 98.4 2E-06 6.7E-11 74.3 10.6 72 124-195 2-76 (93)
212 3n71_A Histone lysine methyltr 98.3 2.8E-06 9.5E-11 98.0 13.8 125 314-438 318-464 (490)
213 3n71_A Histone lysine methyltr 98.3 4.2E-06 1.4E-10 96.5 15.3 136 418-588 317-464 (490)
214 3u64_A Protein TP_0956; tetrat 98.3 5.8E-05 2E-09 78.0 20.6 192 544-746 51-272 (301)
215 1pc2_A Mitochondria fission pr 98.2 7.1E-06 2.4E-10 76.5 11.8 93 145-237 15-111 (152)
216 3bee_A Putative YFRE protein; 98.2 7.7E-06 2.6E-10 70.5 10.8 72 158-230 2-76 (93)
217 1pc2_A Mitochondria fission pr 98.1 1.8E-05 6.2E-10 73.7 11.9 89 108-196 12-105 (152)
218 2v5f_A Prolyl 4-hydroxylase su 98.0 4.5E-05 1.5E-09 67.6 11.6 77 162-238 5-87 (104)
219 3qww_A SET and MYND domain-con 97.9 2.8E-05 9.7E-10 88.0 11.1 100 687-786 310-423 (433)
220 3qww_A SET and MYND domain-con 97.7 9.1E-05 3.1E-09 83.9 11.3 104 460-598 310-426 (433)
221 1nzn_A CGI-135 protein, fissio 97.7 0.00015 5.2E-09 64.8 10.0 94 693-793 19-117 (126)
222 1nzn_A CGI-135 protein, fissio 97.7 0.00023 7.7E-09 63.7 11.1 97 144-240 17-117 (126)
223 3qwp_A SET and MYND domain-con 97.7 0.00032 1.1E-08 79.6 14.2 107 457-598 296-415 (429)
224 3qwp_A SET and MYND domain-con 97.6 0.00026 8.9E-09 80.3 12.5 93 278-370 297-399 (429)
225 4ady_A RPN2, 26S proteasome re 97.5 0.076 2.6E-06 64.4 32.1 244 525-800 413-677 (963)
226 4h7y_A Dual specificity protei 97.4 0.0014 4.8E-08 59.7 11.7 108 520-628 8-129 (161)
227 3ffl_A Anaphase-promoting comp 97.4 0.00075 2.6E-08 63.1 9.8 112 129-241 21-165 (167)
228 4ady_A RPN2, 26S proteasome re 97.2 0.72 2.5E-05 56.1 44.1 44 200-245 233-276 (963)
229 1y8m_A FIS1; mitochondria, unk 97.2 0.0048 1.6E-07 56.0 12.4 80 712-793 37-120 (144)
230 4h7y_A Dual specificity protei 97.0 0.011 3.9E-07 53.8 13.6 58 209-269 72-129 (161)
231 3o48_A Mitochondria fission 1 97.0 0.0066 2.2E-07 54.3 11.6 79 713-793 39-121 (134)
232 1y8m_A FIS1; mitochondria, unk 97.0 0.016 5.4E-07 52.6 13.9 82 159-240 36-120 (144)
233 3ffl_A Anaphase-promoting comp 96.9 0.0045 1.5E-07 57.9 10.4 138 270-420 22-165 (167)
234 3o48_A Mitochondria fission 1 96.8 0.019 6.5E-07 51.4 13.0 82 160-241 38-122 (134)
235 3txn_A 26S proteasome regulato 96.8 0.31 1.1E-05 53.5 25.5 171 41-226 20-210 (394)
236 3spa_A Mtrpol, DNA-directed RN 96.7 0.013 4.4E-07 71.1 14.3 114 674-789 126-240 (1134)
237 3txn_A 26S proteasome regulato 96.6 0.14 4.6E-06 56.4 20.9 294 525-833 19-344 (394)
238 3spa_A Mtrpol, DNA-directed RN 96.2 0.019 6.6E-07 69.6 12.0 111 628-756 127-242 (1134)
239 4gns_B Protein CSD3, chitin bi 96.0 1.3 4.4E-05 53.0 26.3 112 110-223 265-397 (754)
240 3kae_A CDC27, possible protein 95.9 0.1 3.4E-06 48.1 12.1 61 125-190 30-90 (242)
241 1qsa_A Protein (soluble lytic 95.8 2.3 7.8E-05 49.9 27.0 142 42-213 8-152 (618)
242 3kae_A CDC27, possible protein 95.7 1.3 4.5E-05 40.9 20.9 99 306-412 34-150 (242)
243 4b4t_R RPN7, 26S proteasome re 93.9 0.43 1.5E-05 53.8 13.4 107 675-783 131-241 (429)
244 4gns_B Protein CSD3, chitin bi 93.2 0.28 9.5E-06 58.7 10.6 57 679-740 341-397 (754)
245 1qsa_A Protein (soluble lytic 92.8 19 0.00063 42.2 36.7 410 129-582 7-436 (618)
246 3mkq_A Coatomer beta'-subunit; 92.6 4.4 0.00015 49.8 21.3 191 135-393 606-800 (814)
247 4b4t_P 26S proteasome regulato 92.6 3.3 0.00011 46.6 18.1 101 377-477 138-247 (445)
248 4b4t_P 26S proteasome regulato 92.6 9.3 0.00032 42.9 21.8 99 524-622 136-247 (445)
249 3mkq_A Coatomer beta'-subunit; 92.2 4.1 0.00014 50.1 20.2 130 309-475 633-763 (814)
250 4b4t_R RPN7, 26S proteasome re 92.0 0.75 2.6E-05 51.8 11.8 121 108-228 111-239 (429)
251 1zbp_A Hypothetical protein VP 91.2 1.1 3.6E-05 45.7 10.4 118 106-230 9-133 (273)
252 1zbp_A Hypothetical protein VP 91.1 2.3 8E-05 43.2 12.8 59 137-195 6-64 (273)
253 3lpz_A GET4 (YOR164C homolog); 90.9 18 0.00063 38.2 26.6 219 41-281 36-295 (336)
254 3mkq_B Coatomer subunit alpha; 90.6 3.1 0.00011 39.6 12.4 45 353-402 16-60 (177)
255 3mkq_B Coatomer subunit alpha; 90.3 6.4 0.00022 37.4 14.4 45 173-223 16-60 (177)
256 4b4t_S RPN3, 26S proteasome re 90.3 0.62 2.1E-05 52.4 8.6 128 655-784 150-304 (523)
257 4fhn_B Nucleoporin NUP120; pro 89.4 20 0.00069 45.8 23.0 168 167-358 817-987 (1139)
258 2ff4_A Probable regulatory pro 89.2 3.5 0.00012 45.6 13.7 89 134-223 121-231 (388)
259 4fhn_B Nucleoporin NUP120; pro 88.0 12 0.00041 47.9 19.5 144 133-284 817-987 (1139)
260 2ff4_A Probable regulatory pro 87.6 14 0.00047 40.7 17.3 124 312-451 122-248 (388)
261 4b4t_S RPN3, 26S proteasome re 87.5 4.5 0.00015 45.6 12.9 66 306-373 232-301 (523)
262 1ya0_A SMG-7 transcript varian 84.0 3.8 0.00013 46.5 10.4 77 344-420 154-230 (497)
263 1ya0_A SMG-7 transcript varian 83.2 4.9 0.00017 45.6 10.9 80 164-244 154-233 (497)
264 2wpv_A GET4, UPF0363 protein Y 79.5 65 0.0022 33.8 23.9 108 41-152 34-158 (312)
265 3lpz_A GET4 (YOR164C homolog); 77.9 75 0.0026 33.6 27.9 109 349-471 42-159 (336)
266 3lvg_A Clathrin heavy chain 1; 72.6 0.001 3.6E-08 72.7 -21.9 268 161-470 53-326 (624)
267 1wy6_A Hypothetical protein ST 70.6 60 0.0021 29.1 13.9 143 43-192 10-155 (172)
268 1wy6_A Hypothetical protein ST 67.8 39 0.0013 30.3 9.7 82 687-780 73-155 (172)
269 1ko6_B Nuclear pore complex pr 60.3 2.7 9.2E-05 31.7 0.9 17 1021-1037 3-19 (64)
270 3lvg_A Clathrin heavy chain 1; 59.8 0.00069 2.4E-08 74.1 -26.3 228 520-797 49-276 (624)
271 2qx5_A Nucleoporin NIC96; mRNA 48.3 66 0.0023 37.7 10.5 100 148-260 281-382 (661)
272 3t5v_B Nuclear mRNA export pro 48.1 18 0.00062 40.3 5.5 62 722-783 184-254 (455)
273 4gq2_M Nucleoporin NUP120; bet 47.2 1.8E+02 0.0061 36.1 14.9 52 134-189 816-867 (950)
274 4gq2_M Nucleoporin NUP120; bet 46.1 36 0.0012 42.4 8.4 52 348-403 816-867 (950)
275 3esl_A Checkpoint serine/threo 45.3 2.2E+02 0.0074 27.5 13.3 52 689-743 93-144 (202)
276 2p58_C Putative type III secre 44.2 1.4E+02 0.0049 25.0 11.9 75 142-223 21-95 (116)
277 2uwj_G Type III export protein 43.1 1.5E+02 0.0051 24.9 10.8 75 142-223 20-94 (115)
278 3r9m_A BRO1 domain-containing 42.0 1.1E+02 0.0036 33.2 10.4 49 784-832 114-162 (376)
279 2qx5_A Nucleoporin NIC96; mRNA 41.3 4.9E+02 0.017 30.4 18.7 77 347-435 299-382 (661)
280 2w2u_A Hypothetical P60 katani 40.1 38 0.0013 27.5 4.8 18 726-743 31-48 (83)
281 2v6y_A AAA family ATPase, P60 39.1 40 0.0014 27.4 4.8 18 726-743 23-40 (83)
282 2npm_A 14-3-3 domain containin 38.0 3.3E+02 0.011 27.4 15.6 44 526-569 29-76 (260)
283 3t5x_A PCI domain-containing p 38.0 28 0.00096 34.0 4.5 34 750-783 14-47 (203)
284 3re2_A Predicted protein; meni 37.9 2.8E+02 0.0096 29.2 11.7 81 679-779 239-325 (472)
285 2ijq_A Hypothetical protein; s 35.6 1.2E+02 0.0043 28.0 8.1 61 131-191 35-104 (161)
286 3u84_A Menin; MLL, JUND, ledgf 34.8 3.1E+02 0.011 29.4 11.6 81 679-779 261-347 (550)
287 3rk3_E Complexin-1; snare prot 34.8 1.3E+02 0.0045 22.0 6.1 12 886-897 17-28 (63)
288 2w2u_A Hypothetical P60 katani 34.6 45 0.0015 27.0 4.4 13 140-152 31-43 (83)
289 3esl_A Checkpoint serine/threo 34.3 3.2E+02 0.011 26.3 14.1 85 696-781 58-146 (202)
290 3ax2_A Mitochondrial import re 34.0 92 0.0031 24.5 5.8 30 132-161 21-50 (73)
291 2wvi_A Mitotic checkpoint seri 33.5 2.3E+02 0.0078 26.3 9.6 51 731-781 77-127 (164)
292 3t5v_B Nuclear mRNA export pro 33.4 94 0.0032 34.6 8.2 68 83-161 176-254 (455)
293 3u84_A Menin; MLL, JUND, ledgf 33.3 70 0.0024 34.2 6.6 122 42-189 219-345 (550)
294 2v6y_A AAA family ATPase, P60 33.2 48 0.0017 26.9 4.4 16 174-189 23-38 (83)
295 1g70_B RSG-1.2 peptide; peptid 32.5 17 0.00057 20.8 1.0 13 1032-1044 6-18 (26)
296 3mv2_A Coatomer subunit alpha; 32.5 1.4E+02 0.0048 31.1 8.7 25 44-68 118-142 (325)
297 3rau_A Tyrosine-protein phosph 32.5 1.8E+02 0.006 31.3 10.1 46 785-833 118-163 (363)
298 4aez_C MAD3, mitotic spindle c 29.0 3.2E+02 0.011 26.8 10.1 86 694-781 96-181 (223)
299 4aez_C MAD3, mitotic spindle c 28.6 2.1E+02 0.0073 28.0 8.9 52 691-745 130-181 (223)
300 4a1g_A Mitotic checkpoint seri 28.4 3.4E+02 0.012 24.7 9.9 84 695-780 48-131 (152)
301 1o9d_A 14-3-3-like protein C; 28.3 4.7E+02 0.016 26.3 16.9 61 128-188 8-72 (260)
302 2ijq_A Hypothetical protein; s 28.0 2.1E+02 0.0071 26.5 8.2 61 165-225 35-103 (161)
303 3uzd_A 14-3-3 protein gamma; s 26.7 4.9E+02 0.017 26.0 16.1 160 131-296 7-202 (248)
304 3ax2_A Mitochondrial import re 26.6 1.4E+02 0.0048 23.4 5.7 29 202-230 22-50 (73)
305 3t5x_A PCI domain-containing p 26.5 1.1E+02 0.0039 29.6 6.7 33 129-161 15-47 (203)
306 1wfd_A Hypothetical protein 15 26.2 71 0.0024 26.5 4.4 18 726-743 27-44 (93)
307 2wvi_A Mitotic checkpoint seri 25.2 3.9E+02 0.013 24.7 9.6 50 692-744 77-126 (164)
308 3bu8_A Telomeric repeat-bindin 25.1 4.8E+02 0.016 25.3 11.8 133 40-176 16-162 (235)
309 3c3r_A Programmed cell death 6 24.3 2.7E+02 0.0093 30.0 9.9 45 785-832 143-187 (380)
310 4a5x_A MITD1, MIT domain-conta 24.1 1.1E+02 0.0036 25.0 4.9 18 726-743 28-45 (86)
311 1o9d_A 14-3-3-like protein C; 23.9 5.6E+02 0.019 25.7 17.2 60 525-584 8-71 (260)
312 2br9_A 14-3-3E, 14-3-3 protein 23.9 5.3E+02 0.018 25.4 16.9 45 526-570 6-51 (234)
313 3obv_E Protein diaphanous homo 23.7 7.6E+02 0.026 27.2 15.9 12 844-855 365-376 (457)
314 2cpt_A SKD1 protein, vacuolar 23.6 89 0.003 27.2 4.6 18 726-743 30-47 (117)
315 2v6x_A Vacuolar protein sortin 23.1 1.1E+02 0.0036 24.9 4.8 18 726-743 25-42 (85)
316 3mkr_B Coatomer subunit alpha; 22.0 3.9E+02 0.013 27.8 9.8 25 44-68 106-130 (320)
317 1wfd_A Hypothetical protein 15 21.5 1E+02 0.0035 25.6 4.4 16 174-189 27-42 (93)
318 1v9d_A Diaphanous protein homo 20.3 5.2E+02 0.018 27.2 11.0 13 819-831 268-280 (340)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-38 Score=384.05 Aligned_cols=509 Identities=12% Similarity=0.019 Sum_probs=409.6
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
|......+..++..+...|++++|+..|.+++...|++ ..++.++.++...|+ +.+|+..|.+++.. |.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD---YARAKCLLTKEDLY-NRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC---HHHHHHHHHHTCGG-GTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc---HHHHHHHHHHHhcc-ccchhHHH
Confidence 43335566777777777788888888887777777743 566677777777777 77777777766543 55666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.++.+|...|++++|+.+|++.. |.... +..+...+ ......+..+.+++.+|.+|
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~------~~~~~-----~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETN------PFRKD-----EKNANKLL-------------MQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSC------TTC----------------------------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccC------Ccccc-----cccccccc-------------ccccccchhHHHHHHHHHHH
Confidence 66666666666666666666321 11100 00000000 00012244577899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCC-HHHHHHHHHHH-hcCCHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL---LRKAAKIDPRD-AQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---~~k~l~~~p~~-~~~~~~la~l~-~~~~~~~ 427 (1088)
...|++++|+.+|++++..+|.+..++..++.++...+....+... +.++...++.. ...+..++..| ..|++++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999999999999999999999999998877655443333221 23332222211 22334446667 8889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
|+..|.+++.. + .+..+++.++.++...|++++|+.+|++++.
T Consensus 291 A~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------- 333 (597)
T 2xpi_A 291 AEDYLSSINGL-E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILE------------------------------- 333 (597)
T ss_dssp HHHHHHTSTTG-G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHhhcC-C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------
Confidence 99999888765 2 3588999999999999999999999999987
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 587 (1088)
..|.+..++..++.++...|++++|..++..++...|.++.++..++.++...|++++|+.+|++++.
T Consensus 334 ------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 334 ------------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp ------------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 588 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
.+|.++.+|..++.+|...|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|+++
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSS 467 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876 67788889999 9888 9999999999999
Q ss_pred HhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCc-hhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 668 l~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~-~~~~~-~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
+..+|.++.+++.+|.++...|++++|+.+|+++++..|.. ..|+. ..+|.++|.+|...|++++|+..|++++..
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 545 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-- 545 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999986531 11232 679999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHH
Q 001392 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1088)
Q Consensus 746 ~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 795 (1088)
.+.++.++..+|.+|...|++++|+.+|+++++++|+++.++++++.+|.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 57789999999999999999999999999999999999999999998753
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3e-37 Score=355.16 Aligned_cols=383 Identities=20% Similarity=0.254 Sum_probs=345.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001392 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 424 (1088)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~ 424 (1088)
+.+|..++..|++++|+..|.+++..+|+++.++..++.++...|++++|..++.+++..+|.++.++..+|.++ ..|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 356778888888888888888888888888888888888888888888888888888888888888888888888 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
+++|+..|++++...|. ...++.++|.++...|++++|+..|.+++.
T Consensus 83 ~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------- 129 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Confidence 88888888888877544 467888889999999999999999988887
Q ss_pred hhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 584 (1088)
..|....++..+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 130 ---------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 130 ---------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ---------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHH
Q 001392 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664 (1088)
Q Consensus 585 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 664 (1088)
++.++|+++.++..+|.++...|++++|+..|.+++...|. +..++..+|.+ |... |++++|+..|
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~ 260 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTY 260 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHH-HHHc------------CCHHHHHHHH
Confidence 99999999999999999999999999999999999998886 67778888988 8888 9999999999
Q ss_pred HHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 665 ~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
++++..+|.++.++..+|.++...|++++|+.+|+++++..| .++.++.++|.++...|++++|+..|++++..
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 334 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 999999999999999999999999999999999999999987 78899999999999999999999999999987
Q ss_pred cCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 745 ~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
.|.++.++..+|.+|...|++++|+..|++++.+.|+++.+++++|.++..+
T Consensus 335 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 5677899999999999999999999999999999999999999999987654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-36 Score=349.76 Aligned_cols=383 Identities=22% Similarity=0.279 Sum_probs=272.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCC
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~ 212 (1088)
.+|..++..|++++|+..|..++..+|+++.++..++.+++..|++++|..+++.++..+|.+ +.+++.+|.++...|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCC
Confidence 457778888888888888888888888888888888888888888888888888888888887 6678888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1088)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1088)
+++|+..|++++.++|++..++..+|.++...|+ +++|+..|.+++..+|++..++..++.++...|++++|+..+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888888888888888888888888887 8888888888888888777777777766666666666666666
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001392 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1088)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1088)
+++... |..+.++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+..|.+++..+
T Consensus 160 ~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 160 KAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666543 44556666666666667777777777776666 345566666677777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001392 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1088)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1088)
|+++.++..+|.++...|++++|+..|++++..+|.++.++..++.++ ..|++++|+..|++++...|. .+.++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 308 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSL 308 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHH
Confidence 777777777777777777777777777777777776666666666666 666666666666666655332 35555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
..+|.++...|++++|+..|++++. ..|.+..+++++
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~l 345 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCCcHHHHHHH
Confidence 6666666666666666666666655 334455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1088)
|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666665555444
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-37 Score=375.90 Aligned_cols=481 Identities=14% Similarity=0.078 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
.+..+..++..|...|... +|+.+|.+++...| +...++.+|.+|...|++++|+..|.+++.. |.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 149 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYK-----------CAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS 149 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC
T ss_pred HHHHHHHHHHHHHHccCch-----------HHHHHHHHHHhhCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccc
Confidence 3456778888888877766 89999999999888 4577889999999999999999999998654 678
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+.++..++.+|...|++++|+.+|++. .|.. ...+++.+|.+|.+.|++++|+..|+++
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999863 3443 3678999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHH---HHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001392 224 LQLDPENVEALVALAVMDLQANEAAGIRKGMEK---MQRAFEIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1088)
Q Consensus 224 l~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~---~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 299 (1088)
+..+|.+..++..++.++...+. ...+... +......++.. ..++..++..|...|++++|..++..++..
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 301 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTAD---EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-- 301 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHH---HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--
T ss_pred HHhCchhhHHHHHHHHhhcccch---hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--
Confidence 99999999999999887765544 2221111 33333322221 123344577788889999999999888764
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001392 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1088)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1088)
+....+++.++.+|...|++++|+.+|.+++. ..|....++..++.++...|++++|+..|.+++...|.++.++
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILE---IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 45678899999999999999999999999987 3456777888999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
..+|.+|...|++++|+.+|.+++...|.+..+|..++.++ ..|++++|+..|++++...+. ...+++.+|.++
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~ 451 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----THLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----CSHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999998876443 467888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 538 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 538 (1088)
...|++++|+.+|++++. ..|.++.++..+|.++...
T Consensus 452 ~~~g~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYA-------------------------------------------LFQYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHTCHHHHHHHHHHHHH-------------------------------------------HCCCCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH-------------------------------------------hCCCChHHHHHHHHHHHHh
Confidence 999999999999999987 3456788899999999999
Q ss_pred CCHHHHHHHHHHHHHH------cCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHH
Q 001392 539 HDTVAASVLYRLILFK------YQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 539 g~~~~A~~~~~~~l~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
|++++|+.+|++++.. +|+. ..++..++.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999887 5654 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHhhhH
Q 001392 612 AKETFRAASDATDGKDSYATLSLGNW 637 (1088)
Q Consensus 612 A~~~~~~al~~~~~~d~~a~~~lg~~ 637 (1088)
|...|++++...|. +..++..++++
T Consensus 569 A~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 569 AITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 99999999998887 66667667765
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=3.1e-33 Score=336.62 Aligned_cols=460 Identities=13% Similarity=0.121 Sum_probs=276.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..++..|++++|+..|++++..+|+++.+++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-SKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666665 45556666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
..+|++++|+..|+ ++..+|+....+.. .+...+. ...|+..+.+++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~a~~~~~~~l~~~~~~~------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNL---NKQAMKVLNENLSKDEGRG------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHH---HHHHHHHHHHHCC-------------------------
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHH---HHHHHHHHHHHHHhCcccc-------------------
Confidence 66666666666663 55555554433211 1111111 3334444444333332211
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH
Q 001392 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1088)
............+....+...++..+..
T Consensus 158 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 158 ----------------------------------------------------SQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp -----------------------------------------------------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred ----------------------------------------------------ccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 0001111122223333344444333333
Q ss_pred HHHhCCCcHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001392 368 VLEIYPDNCETLKALGHIY--------VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~ 439 (1088)
.....+........++.++ ...|++++|+..|.+++..+|+++..+..++.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------------- 244 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL--------------------- 244 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH---------------------
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH---------------------
Confidence 3333333233333333222 22346777777777777777777665544332
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcC
Q 001392 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (1088)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1088)
++..+|.++...|++++|+..|.+++..
T Consensus 245 ----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~------------------------------------------ 272 (537)
T 3fp2_A 245 ----------ALCYTGIFHFLKNNLLDAQVLLQESINL------------------------------------------ 272 (537)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhc------------------------------------------
Confidence 2344566666667777777777666652
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
.|. ..+++.+|.++...|++++|+.+|.+++..+|+++.++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus 273 -~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 348 (537)
T 3fp2_A 273 -HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI-- 348 (537)
T ss_dssp -CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH--
T ss_pred -CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 333 5566666666666666666666666666666666666666666666666666666666666666665554444
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHh
Q 001392 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 679 (1088)
.+|.+ |... |++++|+.+|++++..+|.++.++.
T Consensus 349 ---------------------------------~la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 349 ---------------------------------QLACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp ---------------------------------HHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred ---------------------------------HHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 45555 5555 6666667777777777788888888
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHc----------cCHHHHHHHHHHHHHHhcCCC
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNT 748 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~----------g~~~~Ai~~~~~al~~~~~~~ 748 (1088)
.+|.++...|++++|+..|++++...|..... .....++.+|.++... |++++|+..|++++.. .+.
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~ 460 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPR 460 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCC
Confidence 88888888899999999999998888743221 2233466778999999 9999999999999998 567
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHH
Q 001392 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1088)
Q Consensus 749 ~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla 791 (1088)
++.++..+|.+|...|++++|+.+|++++.+.|.++.....+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 7899999999999999999999999999999999877655443
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-33 Score=331.85 Aligned_cols=426 Identities=15% Similarity=0.132 Sum_probs=353.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..++..|+|++|+..|++++..+| ++.++..+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 45788888888888888888888888888888 68888888888888888888888888888888888 67788888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHH---------------------------
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA--------------------------- 260 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~a--------------------------- 260 (1088)
..+|++++|+..|++++..+|.+......+..............+++..+..+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 88888888888888888888865544333322222221111122222111111
Q ss_pred -------HHh--------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----h--cCCC----CCchHHHHHH
Q 001392 261 -------FEI--------YPYCAMALNYLANHFFF---TGQHFLVEQLTETALA-----V--TNHG----PTKSHSYYNL 311 (1088)
Q Consensus 261 -------l~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~~~~----~~~~~~~~~l 311 (1088)
+.. .|.++.++..++..++. .|+++.|+.++..++. . .+.. |..+.+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000 14558888888988887 8999999999999998 3 2222 5567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001392 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1088)
|.++...|++++|+.+|.+++.. .|. ..++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999984 455 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001392 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (1088)
+++|+..|.+++...|.++.++..++.++ ..|++++|+..+.+++...+. .+.++..+|.++...|++++|+.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999987554 368899999999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHh---cCCHHHHHHH
Q 001392 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVL 547 (1088)
Q Consensus 471 l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~ 547 (1088)
|.+++...+... .......+++.+|.++.. .|++++|+..
T Consensus 395 ~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 395 YDLAIELENKLD-------------------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHTSS-------------------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHhhhccc-------------------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 999988532100 011124589999999999 9999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhh
Q 001392 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (1088)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~ 601 (1088)
|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876643
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=325.81 Aligned_cols=439 Identities=15% Similarity=0.129 Sum_probs=359.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001392 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1088)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1088)
+..++.+|..++..|++++|+..|.+++.. .| ...+++.+|.++...|++++|+.+|++++..+|+++.++..+|.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL---KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc---Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 467888999999999999999999999874 34 47788999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH---HHHH------------------------
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF---KTAR------------------------ 436 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~---~~a~------------------------ 436 (1088)
+|...|++++|+..|.+++...|.+......+...+ .......+...+ ..+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999998886644333222222 111111111111 0000
Q ss_pred ----HHHHhcC---------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001392 437 ----TLLKKAG---------EEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1088)
Q Consensus 437 ----~~~~~~~---------~~~~~~~~~~l~~~~~~---~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1088)
....... .+.....+..+|.+++. .|++++|+.+|.+++...... +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~---------------- 223 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ--L---------------- 223 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH--T----------------
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh--h----------------
Confidence 0000000 01126777888888886 899999999999998721000 0
Q ss_pred HhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHH
Q 001392 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (1088)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 580 (1088)
..........|..+.+++.+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+.
T Consensus 224 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 224 -----------DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp -----------TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGG
T ss_pred -----------ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHH
Confidence 0000000012567889999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHH
Q 001392 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (1088)
Q Consensus 581 ~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 660 (1088)
++.+++..+|.++.++..+|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A 357 (514)
T 2gw1_A 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------NKFDDC 357 (514)
T ss_dssp HHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------TCHHHH
T ss_pred HHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH-HHHc------------CCHHHH
Confidence 999999999999999999999999999999999999999998887 66788889988 8887 999999
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHH---ccCHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA---QGNFALAMKM 736 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~---~g~~~~Ai~~ 736 (1088)
+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|.... .....+++++|.++.. .|++++|+..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999984211 1113499999999999 9999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 737 ~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
|++++.. .+.++.++..+|.+|...|++++|+.+|++++.++|+++.++..+.+.
T Consensus 438 ~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 438 LEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999998 567799999999999999999999999999999999999988887664
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.6e-32 Score=330.34 Aligned_cols=454 Identities=16% Similarity=0.131 Sum_probs=352.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001392 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1088)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 158 (1088)
.......+..+|..|+..|... +|+.+|++++..+|+++.+++.+|.+++..|++++|+..|++++..+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778899999999998887 89999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---H
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---V 235 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~ 235 (1088)
|+++.+++.+|.++...|++++|+..|+ ++..+|..... + ...+...+....|+..+.+++...|...... .
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH-H---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 9999999999999999999999999996 88888876322 2 2344555667889999999988765432110 1
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhcCCCCC----
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF--------FTGQHFLVEQLTETALAVTNHGPT---- 303 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~~~~~~---- 303 (1088)
.....++...+ ...++..+.+....++........++.++. ..|++.+|+.+++.++...+..+.
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred hHHHHHHHhcC---hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 11111222222 333443333333333443333333333322 224566666666666654332221
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001392 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1088)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1088)
...++..+|.++...|++++|+.+|.+++.. .|. ..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1356788899999999999999999999984 455 788999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001392 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1088)
Q Consensus 384 ~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (1088)
.++...|++++|+..|.+++..+|.++.++..+|.++ ..|++++|+..|.+++...|. .+.++..+|.++...|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 999999999999999988554 3678999999999999
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc----
Q 001392 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI---- 538 (1088)
Q Consensus 463 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 538 (1088)
++++|+..|++++...+... ........++.+|.++...
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQE-------------------------------------KIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-------------------------------------SCSSTTHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHcCCcch-------------------------------------hhHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999998543110 1112334567788899988
Q ss_pred ------CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 539 ------HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 539 ------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++.++|..+....
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887644
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.9e-30 Score=303.15 Aligned_cols=380 Identities=19% Similarity=0.164 Sum_probs=290.7
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1088)
..+...+..++..+|.++..++.+|..++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34556666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 191 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
.+|.+ ..+++.+|.++..+|++++|+..|++++..+|++. .++..++.++..
T Consensus 89 ~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------ 143 (450)
T 2y4t_A 89 LKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------ 143 (450)
T ss_dssp HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred cCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------------------
Confidence 77776 55666777777777777777777777777776665 444444433211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
..++.+|.++...|++++|+.+|.+++. ..|....++..
T Consensus 144 --------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~ 182 (450)
T 2y4t_A 144 --------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELREL 182 (450)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHH
Confidence 2345567778888899999999999887 45677888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 427 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~ 427 (1088)
+|.++...|++++|+.+|++++..+|.++.++..+|.+|...|++++|+.+|.+++...|++...+..++.+.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~------- 255 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------- 255 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999988877665432
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
....+..+|.++...|++++|+.+|.+++...
T Consensus 256 -------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------- 287 (450)
T 2y4t_A 256 -------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE----------------------------- 287 (450)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------
Confidence 02334567888999999999999999998742
Q ss_pred hhhhccCCCCcCCCCcc----hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 583 (1088)
|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+
T Consensus 288 --------------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 288 --------------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333 45788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCChhHHHhhh------------hhhhccc-----chHHHHHHHHH-hhhcCCC
Q 001392 584 EALKVNGKYPNALSMLG------------DLELKND-----DWVKAKETFRA-ASDATDG 625 (1088)
Q Consensus 584 ~al~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-al~~~~~ 625 (1088)
+++.++|+++.++..++ .+|...| ...++...|++ ++...|+
T Consensus 354 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999888 4455555 45667777776 5655554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=8.7e-30 Score=299.04 Aligned_cols=329 Identities=15% Similarity=0.174 Sum_probs=267.4
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1088)
Q Consensus 89 la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1088)
-+..+..+|... .+.|+|.+|+.+|++++..+|.++.+++.+|.+++..|++++|+..|.+++..+|+++.++..+
T Consensus 25 ~~~~~~~~~~~~----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKL----LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 455667777665 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
|.++...|++++|+..|++++..+|.+ . .++..++.++.. ..++.+|.++...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSE-NEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcC
Confidence 999999999999999999999999987 5 556666655432 23456777888888
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 001392 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1088)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1088)
+ +.+|+..|.+++..+|.++.++..++.+|...|++++|+.++..++... |..+.+++.+|.++...|++++|+
T Consensus 158 ~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 158 D---YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp C---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8 9999999999999999999999999999999999999999999988764 556688888898998999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHhhH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhc
Q 001392 326 LYYMASVKEINKPHEFIFPYYGL------------GQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQL 389 (1088)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~ 389 (1088)
.+|.+++. ..|.....+..+ |.++...|++++|+.+|++++...|.++ .++..+|.++...
T Consensus 232 ~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 232 SEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 99888887 345555555444 7777777777777777777777777764 3667777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 390 g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
|++++|+.++.+++..+|+++.++..+|.++ ..|++++|+..|++++.+.|. .+.++..++.+.
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 373 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-----DQQIREGLEKAQ 373 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-----CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHH
Confidence 7777777777777777777777777777777 777777777777777765433 355555555443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2.3e-28 Score=276.88 Aligned_cols=345 Identities=19% Similarity=0.184 Sum_probs=269.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..++..|++++|+..|.+++..+|+++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-TAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666 45566666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 208 YKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
...|++++|+..|++++..+| ++..++..++.++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------------------- 120 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------------------------- 120 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-----------------------------------------
Confidence 666666666666666666666 444444444432110
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1088)
..+..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+
T Consensus 121 ---------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 121 ---------------------QRLRSQALDAFDGADYTAAITFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp ---------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 2345677788888999999999999887 4567788899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
|++++...|.++.++..+|.++...|++++|+..|.+++...|++..++..+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------ 232 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------------------ 232 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999988765544332
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc
Q 001392 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1088)
.......+|.++...|++++|+..|++++... |.+
T Consensus 233 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------------~~~ 267 (359)
T 3ieg_A 233 --KLNKLIESAEELIRDGRYTDATSKYESVMKTE-------------------------------------------PSV 267 (359)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSS
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------------------------------CCc
Confidence 03445567889999999999999999998842 223
Q ss_pred h----HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 525 V----TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 525 ~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
. .++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..++
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 2 457789999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhccc
Q 001392 601 DLELKND 607 (1088)
Q Consensus 601 ~~~~~~g 607 (1088)
.++...+
T Consensus 348 ~~~~~~~ 354 (359)
T 3ieg_A 348 KAQRLLK 354 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765544
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=8.6e-28 Score=272.16 Aligned_cols=323 Identities=17% Similarity=0.150 Sum_probs=285.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
+..+..+|..|...|+.. +|+.+|.+++..+|.++.+++.+|.+++..|++++|+..|.+++..+|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLA-----------DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 456788899988888766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChhHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhC
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHP---SCPGAIRLGI------------GLCRYKLGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~ 227 (1088)
.++..+|.++...|++++|+..|++++...| .+ ..++..+ |.++...|++++|+..|.+++..+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 66 5555555 799999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001392 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1088)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 307 (1088)
|.++.++..+|.++...|+ +++|+..+.+++..+|.++.++..+|.++...|++++|...+..++...+..+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGE---PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999776433321111
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001392 308 ---------YYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (1088)
Q Consensus 308 ---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (1088)
...+|.++...|++++|+..|.+++...+..+. ...++..+|.++...|++++|+.+|++++..+|+++.
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 224488899999999999999999885332111 1134667899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
++..+|.++...|++++|+..|+++++++|++..++..++.+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888776
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=9.1e-29 Score=292.38 Aligned_cols=393 Identities=17% Similarity=0.121 Sum_probs=242.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEA---------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--- 194 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--- 194 (1088)
.+..+..+|.++...|++++|+..|++++.+ +|....++..+|.+|+.+|++++|+.+|++++.+.|.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566778999999999999999999999876 5777889999999999999999999999999987431
Q ss_pred ----ChhHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 195 ----CPGAIRLGIGLCRYKLG--QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 195 ----~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
..+.++..+|.++...| ++++|+.+|+++++++|+++.++..++.++...++.+...+|+..|++++.++|.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 12567777887777654 799999999999999999999999999988777665557889999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1088)
.++..++..+...+ ...|++++|..+|.+++. ..|....++..+
T Consensus 210 ~~~~~l~~~~~~~~---------------------------------~~~~~~~~a~~~~~~al~---~~~~~~~~~~~l 253 (472)
T 4g1t_A 210 YLKVLLALKLHKMR---------------------------------EEGEEEGEGEKLVEEALE---KAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------------hhhhHHHHHHHHHHHHHH---hCccHHHHHHHH
Confidence 87776665543332 233455666666666665 445666667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~ 427 (1088)
|.+|...|++++|+..|.++++.+|+++.++..+|.+|...+....+.. ....+... ..+.++.
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR---------------ENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHHhhHHH
Confidence 7777777777777777777777777777777777766643321111000 00011111 1223344
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
|+..+.+++...+. ...++..+|.++...|++++|+.+|++++...+
T Consensus 319 A~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---------------------------- 365 (472)
T 4g1t_A 319 AVAHLKKADEANDN-----LFRVCSILASLHALADQYEEAEYYFQKEFSKEL---------------------------- 365 (472)
T ss_dssp HHHHHHHHHHHCTT-----TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC----------------------------
T ss_pred HHHHHHHHhhcCCc-----hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC----------------------------
Confidence 55555555554332 133445555566666666666666666555211
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHH-HHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 586 (1088)
.+.....+++.+|.+ +...|++++|+..|.+++.+.|.+...... ...+..++.+++
T Consensus 366 ------------~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l 423 (472)
T 4g1t_A 366 ------------TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRL 423 (472)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHH
Confidence 000011233444433 234556666666666666666655332211 122344455566
Q ss_pred HHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 587 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
..+|.++.++..+|.+|...|++++|+..|+++++..+.
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 666666666666666666666666666666666665443
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.8e-28 Score=287.03 Aligned_cols=363 Identities=15% Similarity=0.072 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC-------
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEI------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------- 372 (1088)
.+|..+|.+++.+|++++|+.+|+++++.. ...+....++.++|.+|...|++++|+.+|++++.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 344445555555555555555555544321 1123334444455555555555555555555554431
Q ss_pred -CCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 373 -PDNCETLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 373 -p~~~~~~~~la~~~~~~--g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~----~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
+..+.++..+|.++... +++++|+.+|++++.++|+++.++..++.++ ..++..+|+..|++++.+.|.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~---- 207 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD---- 207 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS----
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc----
Confidence 22344444444444333 2345555555555555555555555444442 223444455555555444222
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCC
Q 001392 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
.+.++..+|..+.. .|++++|..+|++++. ..
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-------------------------------------------~~ 243 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-------------------------------------------KA 243 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHH-------------------------------------------HC
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------------------------------------------hC
Confidence 23444444433332 2344555555555554 23
Q ss_pred CcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------------------cCChHHHHHHH
Q 001392 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-------------------RNNLQLSIELV 582 (1088)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------------------~g~~~~A~~~l 582 (1088)
|....++.++|.+|...|++++|+..|.+++..+|+++.++..+|.+|.. .+.++.|+..+
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555432 23356677777
Q ss_pred HHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH--HHHHhhhHHHHHHhhhhhcChhHHHHHHHHH
Q 001392 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (1088)
Q Consensus 583 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~--a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 660 (1088)
.+++.++|.+..++..+|.+|...|++++|+..|++++...+.+... .+..+|.+.+... |++++|
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~A 391 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM------------KCEDKA 391 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS------------SCHHHH
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC------------CCHHHH
Confidence 77777777777777777777777777777777777777765542221 2334444412222 566777
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
+..|.+++.++|.+......+ ..+..++.+++...| .++.+|.++|.+|..+|++++|+++|+++
T Consensus 392 i~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p-----~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNG-----ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC------CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777654432221 233445555666555 55666666666666666666666666666
Q ss_pred HHH
Q 001392 741 LRK 743 (1088)
Q Consensus 741 l~~ 743 (1088)
+..
T Consensus 457 Le~ 459 (472)
T 4g1t_A 457 LES 459 (472)
T ss_dssp ---
T ss_pred Hhc
Confidence 665
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-26 Score=258.26 Aligned_cols=301 Identities=17% Similarity=0.225 Sum_probs=276.4
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
...+...|.++..++.+|..++..|++++|+..|++++..+|.+..++..++.+++..|++++|+.++++++..+|.+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-P 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-T
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-H
Confidence 345566688899999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 198 AIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
.+++.+|.++...| ++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|.+++...|.+..++..+|.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE---HDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC------CCCchhhHhhHHH
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK------PHEFIFPYYGLGQ 350 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~ 350 (1088)
++...|+++.|+.++..++... |..+.++..+|.++...|++++|+.+|.+++...+. .+....++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999654 667799999999999999999999999999985421 1555678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDT 425 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~--~~~~~ 425 (1088)
++...|++++|+.+|++++...|+++.++..+|.++...|++++|+.+|++++.++|+++.++..++.++ ..|+.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 55554
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1.3e-24 Score=257.64 Aligned_cols=392 Identities=15% Similarity=0.140 Sum_probs=306.9
Q ss_pred CchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 001392 303 TKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPD 374 (1088)
Q Consensus 303 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~ 374 (1088)
..+.+++.+|.+|.. .+++++|+.+|.++.. ...+.+++.+|.+|.. .+++++|+.+|+++... .
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-----QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 345777777777777 7888888888888876 2456778888888888 88888888888888764 5
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h----cCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 375 NCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 375 ~~~~~~~la~~~~~----~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~----~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
++.+++.||.+|.. .+++++|+.+|+++... .++.+++.||.+| . .+++++|+.+|+++...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 77888888888887 77888888888888764 5778888888888 4 66888888888888763
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCC
Q 001392 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
.++..++.+|.+|.. .+++++|+.+|+++...
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------------------- 216 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------------------------------------------- 216 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------------------------------------------
Confidence 147788888888887 78888888888888762
Q ss_pred CcchHHHHhHHHHHHh----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCh
Q 001392 522 WNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYP 593 (1088)
Q Consensus 522 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~ 593 (1088)
.++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.+|+++... .++
T Consensus 217 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 217 -GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 256778888888886 78888888888888764 557788888888888 88888999999888754 567
Q ss_pred hHHHhhhhhhhcc-----cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH
Q 001392 594 NALSMLGDLELKN-----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1088)
Q Consensus 594 ~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 668 (1088)
.+++.+|.+|... +++++|+..|++++... +..+++.||.+ |..... .+++++|+.+|++++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-y~~~g~---------~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI-YFRLGS---------EEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-HHHSCC---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH-HHhCCC---------cccHHHHHHHHHHHH
Confidence 7888888888877 88999999999888764 45677788888 766410 058899999999998
Q ss_pred hcCCCCHHHHhhHHHHHHh----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 001392 669 VQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNC 740 (1088)
Q Consensus 669 ~~~p~~~~a~~~la~~l~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~a 740 (1088)
.. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.++++||.+|.. .+++.+|+.+|+++
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 87 578899999999998 789999999999998853 58899999999998 89999999999999
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 741 LRKFYY-NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 741 l~~~~~-~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
+...+. +.++.+...||.++.. +...|.....+.++..|.+
T Consensus 430 ~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~ 471 (490)
T 2xm6_A 430 STNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPE 471 (490)
T ss_dssp HHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHH
T ss_pred HHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHH
Confidence 988533 3357778888877654 3345555555555555543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=4.6e-24 Score=252.92 Aligned_cols=328 Identities=17% Similarity=0.144 Sum_probs=205.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 184 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~ 184 (1088)
++..+.++.. +.++.+++.+|.+|+. .+++++|+..|++++.. .++.+++.+|.+|.. .+++++|+.+
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4555665544 6788999999999998 89999999999999876 578899999999998 8999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hchHHhHHHHHHH
Q 001392 185 YKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEK 256 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~ 256 (1088)
|+++.... + +..++.+|.+|.. .+++++|+.+|+++... +++.+++.||.+|.. .++ +.+|+.+
T Consensus 102 ~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~ 173 (490)
T 2xm6_A 102 YKKAALKG--L-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD---YVMAREW 173 (490)
T ss_dssp HHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHH
T ss_pred HHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHH
Confidence 99998753 4 5678889999988 78999999999998764 578888888888876 455 8888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh----cCCHHHHHHHH
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYY 328 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 328 (1088)
|+++... .++.+++.++.+|.. .+++++|..++.++... ..+.+++.+|.+|.. .+++++|+.+|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8887765 356666666666655 55555555555555542 223455555555554 45555555555
Q ss_pred HHHHHhcCCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 001392 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELL 399 (1088)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~ 399 (1088)
.+++. .....+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|
T Consensus 247 ~~a~~-----~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAE-----QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHT-----TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 55543 1233445555555554 45555555555555432 3444555555555544 4555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 001392 400 RKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSF 471 (1088)
Q Consensus 400 ~k~l~~~p~~~~~~~~la~l~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~l 471 (1088)
+++.+. .++.+++.+|.+| ..| ++++|+.+|+++... .++..++++|.+|.. .+++++|+.+|
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 555443 2344444444444 222 344444444444332 123444444444444 34444444444
Q ss_pred HHHH
Q 001392 472 KDAL 475 (1088)
Q Consensus 472 ~~al 475 (1088)
++++
T Consensus 391 ~~A~ 394 (490)
T 2xm6_A 391 RKAA 394 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.3e-25 Score=247.76 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..++..++..++..|... +|+.+|++++..+|.++.++..++.+++..|++++|+..|.+++..+|.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFK-----------MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 346677888888877766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 163 ~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
.+++.+|.++...| ++++|+..|++++..+|.. +.++..+|.++...|++++|+..|++++...|++..++..+|.++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999 9999999999999999998 678999999999999999999999999999999999999999999
Q ss_pred HhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC------CCCchHHHHHHHHHH
Q 001392 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSY 315 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~~~~la~~~ 315 (1088)
...|+ +++|+..|++++..+|.++.++..+|.++...|++++|+..+..++...+. .+..+.++..+|.++
T Consensus 170 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNN---SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999976422 145568999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HhcCCHH
Q 001392 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY-VQLGQIE 393 (1088)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~ 393 (1088)
...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++..+|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 45678889999999999999999999999999999999999999999998 4556543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=2.3e-24 Score=258.28 Aligned_cols=430 Identities=13% Similarity=0.058 Sum_probs=333.7
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001392 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1088)
|+++++.+|.+..+|+.++.. ...|++++|...|++++...|.++.+|..++..+...|++++|..+|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~- 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H- 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-
Confidence 678899999999999999984 7899999999999999999999999999999999999999999999999999999 4
Q ss_pred hHHHHHHHH-HHHHcCCHHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHh---------hchHHhHHHHHHHHHH
Q 001392 197 GAIRLGIGL-CRYKLGQLGKARQ----AFQRALQL---DPENVEALVALAVMDLQ---------ANEAAGIRKGMEKMQR 259 (1088)
Q Consensus 197 ~~~~~~lg~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~la~~~~~---------~~~~~~~~~Al~~~~~ 259 (1088)
..+|+.++. +....|+++.|+. .|++++.. +|.+...|..++.+... .|+ ++.|..+|++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHH
Confidence 456777764 4456788877765 88888764 56778888888877655 455 9999999999
Q ss_pred HHHhCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH---Hh
Q 001392 260 AFEIYPYCAM--ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KE 334 (1088)
Q Consensus 260 al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~ 334 (1088)
++. .|.... .+...+......|. . ..... +....+++..|...|.... ..
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~-~----~~~~~-------------------l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINI-H----LAKKM-------------------IEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCH-H----HHHHH-------------------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhch-h----HHHHH-------------------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999 565432 22222221111110 0 00000 0112345666766665521 11
Q ss_pred cCC-----CCCc-------hhhHhhHHHHHHHc----CC----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh------
Q 001392 335 INK-----PHEF-------IFPYYGLGQVQLKL----GD----FRSALTNFEKVLEIYPDNCETLKALGHIYVQ------ 388 (1088)
Q Consensus 335 ~~~-----~~~~-------~~~~~~la~~~~~~----g~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 388 (1088)
+.. +|.. ...|.......... ++ ...++..|++++..+|.++.+|..+|.++..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 111 2221 12333332222211 22 2478899999999999999999999999986
Q ss_pred -cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 389 -LGQIE-------KAQELLRKAAK-IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 389 -~g~~~-------~A~~~~~k~l~-~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
.|+++ +|+.+|++++. ..|++..+|+.++.++ ..|++++|...|++++...+. .+..+|..++.++
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI----DPTLVYIQYMKFA 366 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS----CHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc----CchHHHHHHHHHH
Confidence 78877 99999999997 7999999999999999 999999999999999986332 1136899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHH-HHh
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQ 537 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~ 537 (1088)
.+.|++++|+.+|.+++.. .|....++...+.+ +..
T Consensus 367 ~~~~~~~~A~~~~~~Al~~-------------------------------------------~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKARED-------------------------------------------ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------TTCCTHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-------------------------------------------cCCchHHHHHHHHHHHHH
Confidence 9999999999999999983 33344555555544 446
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh----HHHhhhhhhhcccchHHHH
Q 001392 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKAK 613 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~ 613 (1088)
.|++++|..+|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++. +|..++.+....|+.+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999877665 8888888889999999999
Q ss_pred HHHHHhhhcCC
Q 001392 614 ETFRAASDATD 624 (1088)
Q Consensus 614 ~~~~~al~~~~ 624 (1088)
.++.+++...|
T Consensus 484 ~~~~r~~~~~p 494 (530)
T 2ooe_A 484 KVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHCc
Confidence 99999998776
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=1.2e-25 Score=255.87 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=192.9
Q ss_pred HHHHHHHH-HHHHHhhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001392 108 EHFILATQ-YYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (1088)
Q Consensus 108 ~~~~~A~~-~~~~a~~~~p~~~----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al 182 (1088)
++|.+|+. .|++++...|.++ ..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 34558998 9999999988774 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------------HHHHHhhch
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------------AVMDLQANE 246 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------------a~~~~~~~~ 246 (1088)
..|++++..+|.+ ..++..+|.++...|++++|+..|.+++..+|.+..++..+ +.++ ..|+
T Consensus 119 ~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (368)
T 1fch_A 119 SALRRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL 196 (368)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc
Confidence 9999999999998 77899999999999999999999999999999887665433 2222 2222
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 001392 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1088)
+.+|+..|.+++..+|.. + .+.++..+|.++...|++++|+.
T Consensus 197 ---~~~A~~~~~~a~~~~p~~----------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 197 ---FLEVKELFLAAVRLDPTS----------------------------------I-DPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp ---HHHHHHHHHHHHHHSTTS----------------------------------C-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCcCc----------------------------------c-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 333333333333333330 0 22444445555555555555555
Q ss_pred HHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001392 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~ 406 (1088)
+|.+++. ..|....+++.+|.++...|++++|+.+|++++...|.++.++..+|.+|...|++++|+.+|++++.+.
T Consensus 239 ~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 239 CFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5555554 2344445555555555555555555555555555555555555555655555566666666655555555
Q ss_pred CCC-----------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 407 PRD-----------AQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 407 p~~-----------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
|.+ ..+|..++.++ ..|+++.|..++.+++..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 554 55555555555 5555555555555544443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=3.2e-23 Score=248.32 Aligned_cols=442 Identities=10% Similarity=0.053 Sum_probs=330.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1088)
|++++..+|.+..+|..++.. ...|+++.|..+|++++.. .|.....|..++..+...|+++.|..+|.+++.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~--- 74 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM--- 74 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Confidence 678889999999999999884 7789999999999999865 477788999999999999999999999999987
Q ss_pred CCCCchhhHhhHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCcHHHHHHHHHHHHh---------cCCHHHHHHHH
Q 001392 337 KPHEFIFPYYGLGQ-VQLKLGDFRSALT----NFEKVLEI---YPDNCETLKALGHIYVQ---------LGQIEKAQELL 399 (1088)
Q Consensus 337 ~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~ 399 (1088)
..| .+..|..++. +....|+++.|.. .|++++.. +|.+..+|...+.+... .|+++.|..+|
T Consensus 75 ~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 75 KVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp TCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred cCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 334 4556777664 3345677776655 77777654 45677888887777665 67888999999
Q ss_pred HHHHHhCCCCH--HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 400 RKAAKIDPRDA--QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 400 ~k~l~~~p~~~--~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
++++. .|... ..|....... ..+. ..+ ...+....+++..|...|.....
T Consensus 154 ~~al~-~P~~~~~~~~~~~~~~e~~~~~-~~~-------------------------~~~l~~~~~~~~~A~~~~~~~~~ 206 (530)
T 2ooe_A 154 QRGCV-NPMINIEQLWRDYNKYEEGINI-HLA-------------------------KKMIEDRSRDYMNARRVAKEYET 206 (530)
T ss_dssp HHHTT-SCCTTHHHHHHHHHHHHHHHCH-HHH-------------------------HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHh-chhhhHHHHHHHHHHHHHhhch-hHH-------------------------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 99888 56542 2222222211 1110 000 00011123456667666655321
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCc-------chHHHHhHHHHHHh----cCCH----
Q 001392 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN-------KVTVLFNLARLLEQ----IHDT---- 541 (1088)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~la~~~~~----~g~~---- 541 (1088)
.. ..+.... ...+|. ...+|......... .++.
T Consensus 207 ~~------------------------------~~l~~~~--~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~ 254 (530)
T 2ooe_A 207 VM------------------------------KGLDRNA--PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLIT 254 (530)
T ss_dssp HH------------------------------HHCCSSS--CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHH
T ss_pred HH------------------------------HHhcccc--ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHH
Confidence 10 0000000 001121 12344433332222 1232
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-HCCCChhHHHhhhhhhhcc
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNLQ-------LSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~l~~al~-~~p~~~~~~~~l~~~~~~~ 606 (1088)
..++..|++++..+|.++.+|+.++.++.. .|+++ +|+.+|++++. +.|+++.+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999886 79987 89999999997 8999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHH-H
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV-L 685 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~-l 685 (1088)
|++++|...|++++...|.....+++.++.+ +... |++++|..+|.++++..|.+...+...+.+ +
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 9999999999999998776323577778877 6666 999999999999999999887777776666 3
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhh
Q 001392 686 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEA 763 (1088)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~La~~~~~~ 763 (1088)
...|++++|..+|+++++..| +++.+|.+++.++...|++++|..+|++++...+.++. ..++...+......
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p-----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHcCChhHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999998 78999999999999999999999999999997544332 55777778888889
Q ss_pred ccHHHHHHHHHHHHHhCCCC
Q 001392 764 EQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 764 g~~~~A~~~l~~al~~~p~~ 783 (1088)
|+.+.+..++.++++..|.+
T Consensus 477 G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp SCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHCchh
Confidence 99999999999999999954
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=4.6e-25 Score=251.05 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=251.7
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC
Q 001392 137 LLLAKGEVEQASS-AFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1088)
Q Consensus 137 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g 211 (1088)
++...|+|++|+. .|.+++...|.++ .+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCc
Confidence 6677788999998 8888888877764 568888999999999999999999999988888 677888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1088)
++++|+..|++++.++|++..++..+|.++...|+ +.+|+..|.+++..+|.+...+..++....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAG------------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSTTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHhh------------
Confidence 99999999999999999888889999998888888 888999999998888887755543322100
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
.......+..++.++ ..|++++|+.+|.+++.. .|. ...++..+|.++...|++++|+.+|++++
T Consensus 178 ---------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 178 ---------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000112333556666 889999999999999984 445 67889999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC----
Q 001392 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE---- 444 (1088)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~---- 444 (1088)
..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++ ..|++++|+..|++++.+.|....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999887522
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 445 --EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 445 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
.....++..+|.++...|++++|..++.+++.
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 22378999999999999999999999987765
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=3.5e-24 Score=243.61 Aligned_cols=279 Identities=13% Similarity=0.098 Sum_probs=196.2
Q ss_pred HHHHHHHhhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 114 TQYYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
...+..+....+.++ ..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556655555554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHhhchHHhHHHHHHHHHH
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------AVMDLQANEAAGIRKGMEKMQR 259 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------a~~~~~~~~~~~~~~Al~~~~~ 259 (1088)
..+|.+ ..++..+|.++..+|++++|+..|++++.++|++..++..+ |.++...|+ +++|+..|.+
T Consensus 127 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV---LEGVKELYLE 202 (365)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH---HHHHHHHHHH
T ss_pred hcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh---HHHHHHHHHH
Confidence 999999 78899999999999999999999999999999876666554 777777777 8888888888
Q ss_pred HHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001392 260 AFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1088)
Q Consensus 260 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1088)
++..+|. ++.++..+ |.++...|++++|+.+|.+++. .
T Consensus 203 al~~~p~~~~~~~~~~l-------------------------------------~~~~~~~g~~~~A~~~~~~al~---~ 242 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGL-------------------------------------GVLFHLSGEFNRAIDAFNAALT---V 242 (365)
T ss_dssp HHHHSCSSCCHHHHHHH-------------------------------------HHHHHHHTCHHHHHHHHHHHHH---H
T ss_pred HHHhCcCccCHHHHHHH-------------------------------------HHHHHHCCCHHHHHHHHHHHHH---h
Confidence 8888877 56555444 4455555555555555555554 2
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------
Q 001392 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--------- 408 (1088)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~--------- 408 (1088)
.|....++..+|.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 34445555666666666666666666666666666666666666666666666666666666666665544
Q ss_pred ---CHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 409 ---DAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 409 ---~~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
+..+|..++.++ ..|+.+.+.....+.+
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 245566666666 6666666555554433
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2.9e-24 Score=244.32 Aligned_cols=294 Identities=19% Similarity=0.191 Sum_probs=241.6
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001392 149 SAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1088)
Q Consensus 149 ~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 224 (1088)
..+...+...+.+ ...++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.++..+|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444 4459999999999999999999999999999998 7789999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 001392 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1088)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 304 (1088)
.++|++..++..+|.++...|+ +++|+..|.+++..+|.+..++..++ ..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~ 176 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSH---QQDACEALKNWIKQNPKYKYLVKNKK---------------------------GS 176 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCccchHHHhhhc---------------------------cc
Confidence 9999999999999999999998 99999999999999887665443332 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001392 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1088)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1088)
...+..+|.++...|++++|+.+|.+++.. .|. ...+++.+|.++...|++++|+.+|++++...|.++.++..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 245667889999999999999999999984 455 678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-------CCHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-------VPIEVLNNI 454 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~l 454 (1088)
|.+|...|++++|+.+|++++..+|+++.++..+|.++ ..|++++|+..|++++.+.|..... ....++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999998874332 125789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 001392 455 GVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 455 ~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+.++...|+.+.+.....+.+.
T Consensus 334 ~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 334 RIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999888876544
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=4.2e-24 Score=241.01 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=231.8
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhH
Q 001392 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~~~p~~~~~ 198 (1088)
++.++|.++.+|..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++ ..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HH
Confidence 5677888999999999999999999999999999999999999999999999999997 999999999999999999 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+|+.+|.++..+|++++|+..|++++.++|++..+|+.+|.++...|+ +++|+..|++++.++|.+..+|+.+|.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 99999999999999999998877777776
Q ss_pred Hh-cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC-
Q 001392 279 FF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG- 356 (1088)
Q Consensus 279 ~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g- 356 (1088)
.. .|.+++|+ .+.++.+|.+++. ..|.+..+|+.++.++...|
T Consensus 245 ~~l~~~~~eA~--------------------------------~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 245 SNTTGYNDRAV--------------------------------LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTTCSCSHHH--------------------------------HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCG
T ss_pred HHhcCcchHHH--------------------------------HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCc
Confidence 66 33323332 2334577777777 56778888888898888887
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Q 001392 357 -DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKA-AKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 357 -~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~k~-l~~~p~~~~~~~~la~l~ 420 (1088)
++.+|+..+.++ +.+|+++.++..+|.+|...| .+++|+.+|+++ ++++|.....|..++..+
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 688999999888 888999999999999998874 258999999999 899999999999888877
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.8e-23 Score=233.34 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=195.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
++..++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..++..+|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL--------------AV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--------------a~-~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
+...|++++|+..|.+++..+|.+..++..+ +. ++...|+ +.+|+..+.+++..+|.++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~-- 173 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE---YRECRTLLHAALEMNPNDAQ-- 173 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH---HHHHHHHHHHHHHHSTTCHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc---HHHHHHHHHHHHhhCCCCHH--
Confidence 9999999999999999999999887776665 33 3444444 66666666666666665553
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHH
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1088)
++..+|.++...|++++|+.+|.+++. ..|....++..+|.+
T Consensus 174 -----------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 174 -----------------------------------LHASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGAT 215 (327)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHH
Confidence 344444444455555555555555554 234445556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHH
Q 001392 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------------DAQAFIDLGEL 419 (1088)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~------------~~~~~~~la~l 419 (1088)
+...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++...|. ++.++..++.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666 56666666666
Q ss_pred H-hcCCHHHHHHHHHHHHHHHHh
Q 001392 420 L-ISSDTGAALDAFKTARTLLKK 441 (1088)
Q Consensus 420 ~-~~~~~~~A~~~~~~a~~~~~~ 441 (1088)
+ ..|+++.|...+++++...+.
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcch
Confidence 6 666666666666665555544
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=6.7e-24 Score=239.33 Aligned_cols=259 Identities=9% Similarity=-0.020 Sum_probs=240.7
Q ss_pred CcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHCCCChhH
Q 001392 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNA 595 (1088)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~~ 595 (1088)
.+...|....+++++|.++...|++++|+..|.+++..+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3457788999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH
Q 001392 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1088)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 675 (1088)
|+.+|.++...|++++|+..|++++.+.|. +..++..+|.+ +... |++++|+.+|++++.++|.+.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999988 88899999999 8888 999999999999999999999
Q ss_pred HHHhhHHHHHHh-cCCchHH-----HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHcc--CHHHHHHHHHHHHHHhcCC
Q 001392 676 YAANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYN 747 (1088)
Q Consensus 676 ~a~~~la~~l~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g--~~~~Ai~~~~~al~~~~~~ 747 (1088)
.+++++|.++.. .|.+++| +..|.+++...| ++..+|+++|.++...| ++.+|+..++.+ .. .+
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p 306 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SH 306 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TC
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CC
Confidence 999999999999 6666888 599999999998 78999999999999988 699999999887 44 67
Q ss_pred CCHHHHHHHHHHHHhhc---------cHHHHHHHHHHH-HHhCCCChhHHhHHHHHHHHH
Q 001392 748 TDAQILLYLARTHYEAE---------QWQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 748 ~~~~~l~~La~~~~~~g---------~~~~A~~~l~~a-l~~~p~~~~~~~nla~~~~~~ 797 (1088)
.++.++..||.+|...| .+++|+.+|+++ ++++|.....+.+++.++..+
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 77999999999999985 358999999999 999999999999998876544
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=2.2e-23 Score=232.54 Aligned_cols=273 Identities=13% Similarity=0.080 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
...++.+|..++..|++++|+.+|++++. ..|.++.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~ 57 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEA 57 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHH
Confidence 34567788888888888888888888887 34567788
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhh--------
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------- 599 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l-------- 599 (1088)
++.+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+.++.+++...|.+..++..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888777766
Q ss_pred ------hh-hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCC
Q 001392 600 ------GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672 (1088)
Q Consensus 600 ------~~-~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 672 (1088)
+. ++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|++++..+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRP 203 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCC
Confidence 66 677888888888888888887776 66777778877 7777 888888888888888888
Q ss_pred CCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC----
Q 001392 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 748 (1088)
Q Consensus 673 ~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~---- 748 (1088)
.++.++..+|.++...|++++|+.+|++++...| .++.++.++|.+|..+|++++|+..|++++...+...
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 8888888888888888888888888888888776 6677888888888888888888888888888754310
Q ss_pred ------CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 749 ------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 749 ------~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
++.++..+|.++...|++++|..++++++...|.
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 4677788888888888888888888777766554
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=6.2e-19 Score=215.37 Aligned_cols=294 Identities=13% Similarity=0.112 Sum_probs=166.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001392 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1088)
Q Consensus 36 e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~ 115 (1088)
|..+++---.++.+|...|.+.+|+.+|++++-. +.. |++. ..+..+..++.+....++. .+.+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~-fs~n--~~LqnlLi~tAIkaD~~Rv-----------~eyI~ 1045 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSV-FSEH--RNLQNLLILTAIKADRTRV-----------MEYIN 1045 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCc-cccc--HHHHHHHHHHHHHhChhhH-----------HHHHH
Confidence 3444555566778888888888888888887622 222 3332 2222232233333322221 13333
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.++..+ .-..|.++...|.+++|..+|+++- .+..+ +...+...+++++|+++++++ +.
T Consensus 1046 kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~ 1104 (1630)
T 1xi4_A 1046 RLDNYD---------APDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NE 1104 (1630)
T ss_pred Hhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CC
Confidence 332221 1237888888888888888888862 11111 122233777888888887765 22
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001392 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1088)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la 275 (1088)
+.+|+.+|.++...|++++|+.+|.++ +++.++..++.++...|+ +++|+.+|..+.+..+.. .+-..+|
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk---yEEAIeyL~mArk~~~e~-~Idt~La 1174 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN---WEELVKYLQMARKKARES-YVETELI 1174 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcccc-cccHHHH
Confidence 667888888888888888888888765 677788888888888887 888888888777766432 2222355
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc
Q 001392 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1088)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1088)
.+|.+.++++....+ +. ......+..+|..+...|+|++|..+|.++- .|..++.++.+.
T Consensus 1175 faYAKl~rleele~f----I~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEF----IN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHL 1234 (1630)
T ss_pred HHHHhhcCHHHHHHH----Hh-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHh
Confidence 555555555432222 11 1112334445555555555555555555431 244555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
|+++.|++++.++ .+..+|...+.++...|++..|..+..
T Consensus 1235 ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555555555544 333455555555555555555544443
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=4.3e-19 Score=216.79 Aligned_cols=359 Identities=12% Similarity=0.072 Sum_probs=250.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1088)
+|.++...|.+++|..+|+++.. . ...+...+...+++++|+++++++ +.+.+|+.+|.++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-------~---~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-------N---TSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-------H---HHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC
Confidence 56666666777777777666421 1 111222233666666666666644 44666667777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (1088)
++.+|+..|.++ +++..|..++.++ ..|++++|+.+|..+.+..+. +.+-..+|.+|.+.++++. +.
T Consensus 1120 ~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------~~Idt~LafaYAKl~rlee-le 1187 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------SYVETELIFALAKTNRLAE-LE 1187 (1630)
T ss_pred CHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc------ccccHHHHHHHHhhcCHHH-HH
Confidence 777777776554 5666666666666 667777777777666654322 1222236666666666653 33
Q ss_pred HHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHH
Q 001392 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (1088)
Q Consensus 470 ~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (1088)
.| +. .+ +...+..+|..+...|++++|..+|.
T Consensus 1188 ~f---I~--------------------------------------------~~-n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1188 EF---IN--------------------------------------------GP-NNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HH---Hh--------------------------------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33 11 12 33566789999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH
Q 001392 550 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629 (1088)
Q Consensus 550 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~ 629 (1088)
.+ ..|..++.++..+|+++.|++.+.++ .++.+|...+.++...|++..|..+... +... +.
T Consensus 1220 kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~----~d 1281 (1630)
T 1xi4_A 1220 NV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH----AD 1281 (1630)
T ss_pred hh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC----HH
Confidence 85 58999999999999999999999998 5678999999999999999999998875 3222 22
Q ss_pred HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh--cCCchHHHHHHHHHHHHhcC
Q 001392 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE--KGQFDVSKDLFTQVQEAASG 707 (1088)
Q Consensus 630 a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~--~g~~~~A~~~~~~~~~~~p~ 707 (1088)
.+..++.. |... |.+++|+.+|++++.++|.+...+..+|.++++ -+++.+++++|..-+...|-
T Consensus 1282 eLeeli~y-Ye~~------------G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1282 ELEELINY-YQDR------------GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred HHHHHHHH-HHHc------------CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 34467777 8777 999999999999999999999999888888886 45888888888876664320
Q ss_pred CCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHH----------HhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001392 708 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR----------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1088)
Q Consensus 708 ~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~----------~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al 777 (1088)
-..-.....|..+..+|.+.|+|+.|+...-.... .-....++.+++.....|. +....++..|..++
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 1426 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHHHHHHHh
Confidence 00013577899999999999999999943222210 0113566888888877777 45556666666655
No 31
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=2.2e-22 Score=234.67 Aligned_cols=386 Identities=12% Similarity=0.085 Sum_probs=272.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
..+|..+...|++++|+.+|.++... .++.+++.+|.+|...|++ .+|+.+|++++.. ++.+++.+|.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCTGGGTCC-------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 45788899999999999999999863 4567788999999999988 8999999999875 77889999997
Q ss_pred HHhcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 001392 386 YVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (1088)
Q Consensus 386 ~~~~g-----~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 459 (1088)
+...+ ++++|+.+|++++... ++.+++.||.+| ..+....+...+.......+.. .+..++.+|.+|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 77665 7899999999998854 455899999998 5555444444444333333221 3578888999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcC
Q 001392 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1088)
Q Consensus 460 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1088)
..+.++.+.......... ....++.+++++|.+|...|
T Consensus 153 ~~~~~~~~~~~a~~~~~~------------------------------------------a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKA------------------------------------------ALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHTCGGGGHHHHHHHHHH------------------------------------------HTTTCTTHHHHHHHHHHHTT
T ss_pred cCCCcccCHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHHcC
Confidence 998665555443322221 01123448899999999999
Q ss_pred ---CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCCChhHHHhhhhh-h--hcccch
Q 001392 540 ---DTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDW 609 (1088)
Q Consensus 540 ---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~l~~~-~--~~~g~~ 609 (1088)
++.+|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH
Confidence 999999999999999999888889999998765 78999999999987 8899999999998 4 567889
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh--
Q 001392 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-- 687 (1088)
Q Consensus 610 ~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~-- 687 (1088)
.+|+.+|+++.... +..+++.||.+ |....... .++.+|+.+|+++. |.++.+.+.||.+|..
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y~~G~g~~--------~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKL-YYEGKWVP--------ADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCSSSC--------CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHH-HHcCCCCC--------CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 99999999988764 67788888988 76321000 37899999999988 8899999999988887
Q ss_pred --cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001392 688 --KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1088)
Q Consensus 688 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 761 (1088)
..++.+|+.+|+++.+. .++.++++||.+|.. ..++.+|+.+|+.+... .++.....++.+..
T Consensus 333 g~~~d~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN-------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEA 401 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT-------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34889999999998874 357889999999885 35899999999998875 34555566665543
Q ss_pred h--hccHHHHHHHHHHHHHh
Q 001392 762 E--AEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 762 ~--~g~~~~A~~~l~~al~~ 779 (1088)
. .++..+|...+++....
T Consensus 402 ~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHh
Confidence 3 34555666666555443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.7e-22 Score=212.13 Aligned_cols=240 Identities=12% Similarity=0.026 Sum_probs=225.4
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-------hhHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNAL 596 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~~ 596 (1088)
.+..++.+|.++...|++++|+.+|.+++..+ .++.++..+|.++...|++++|+.++.+++.+.|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 56789999999999999999999999999999 889999999999999999999999999999999877 6899
Q ss_pred HhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 001392 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1088)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 676 (1088)
..+|.++...|++++|+..|++++...|. +.+ +... |++++|+..|.+++..+|.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchHH
Confidence 99999999999999999999999998775 344 6666 9999999999999999999999
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
++..+|.++...|++++|+..|++++...| .++.++.++|.+|...|++++|+..|++++.. .+.++.++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l 213 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRK 213 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHH
Confidence 999999999999999999999999999997 77899999999999999999999999999998 57779999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhC------CCChhHHhHHHHH
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 793 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~nla~~ 793 (1088)
|.++...|++++|+.+|+++++++ |.+..++..++.+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999 8888887777665
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=5.5e-22 Score=214.98 Aligned_cols=253 Identities=13% Similarity=0.088 Sum_probs=187.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGI 203 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~l 203 (1088)
++..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++. .|.+ ...+++.+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999998 4433 23348899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
|.++..+|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|++++..+|.++.++..+|...+..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN---FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 9999999999999999888888877744444457
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC-----chhhHhhHHHHHHHc
Q 001392 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD---YEKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKL 355 (1088)
Q Consensus 284 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~ 355 (1088)
+++|+..++.++... |....+++.+|.++...|+ +++|+..|.+++......+. ...++..+|.++...
T Consensus 158 ~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 777777777766544 4445666666666666666 66666666666654322122 123455555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001392 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1088)
|++++|+.+|++++.++|+++.++..++.+.
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 5555555555555555555555555544443
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.8e-21 Score=207.29 Aligned_cols=240 Identities=18% Similarity=0.187 Sum_probs=179.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1088)
.+..++.+|.+++..|++++|+.+|.+++..+ .++.++..+|.++...|++++|+..|.+++...|... ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35678889999999999999999999999988 8889999999999999999999999999998887653 5678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+.+|.++..+|++++|+..|++++.+.|. +.++...|+ +.+|+..+.+++..+|.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~----------- 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRN---AEKELKKAEAEAYVNPEKAE----------- 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHH---HHHHHHHHHHHHHCCHHHHH-----------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhH---HHHHHHHHHHHHHcCcchHH-----------
Confidence 88999999999999999999999988886 344555565 78888888888777766554
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
++..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++
T Consensus 141 --------------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 141 --------------------------EARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp --------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------------HHHHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHH
Confidence 444555555555556666666666555 234455666667777777777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 001392 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGE 418 (1088)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~------p~~~~~~~~la~ 418 (1088)
|+.+|++++..+|+++.++..+|.++...|++++|+.+|++++.+. |.+..++..++.
T Consensus 192 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777766 666666555544
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=4.8e-22 Score=215.49 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=224.7
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhH----HHhh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA----LSML 599 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~----~~~l 599 (1088)
++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++.+++. .|.++.. +..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999 5555544 8999
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHh
Q 001392 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 679 (1088)
|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+..|++++..+|.++.++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSY-FYNK------------GNFPLAIQYMEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH-HHHT------------TCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHH-HHHc------------cCHHHHHHHHHHHhhcCCCcHHHHH
Confidence 99999999999999999999999887 67788899999 9988 9999999999999999999999999
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccC---HHHHHHHHHHHHHHhcCCCC------H
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTD------A 750 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~Ai~~~~~al~~~~~~~~------~ 750 (1088)
.+|......+++++|+..|+++++..| .++.+++.+|.++..+|+ +.+|+..|++++......++ .
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 999444445699999999999999998 778999999999999999 99999999999998633333 3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.++..+|.+|...|++++|+.+|++++.++|+++.++-.++.+
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 6888999999999999999999999999999999888777765
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=1.1e-21 Score=228.75 Aligned_cols=317 Identities=17% Similarity=0.113 Sum_probs=162.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+|..++..|++++|+..|.++... .++.+++.+|.+++..|++ .+|+.+|++++.. + +.+++.+|.++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~-~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S-PRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHH
Confidence 34566777777777777777776554 3566666777777766666 6777777777655 2 344666677555
Q ss_pred HcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 209 KLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 209 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
..+ ++++|+.+|++++.. +++.+++.||.+|...+....-.+++..+.++... .++.+++.++.+|...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 554 666777777777663 33446677777766655421123344444444332 234555566666666654
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc----C
Q 001392 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----G 356 (1088)
Q Consensus 284 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g 356 (1088)
++.+............ ...+.+++.+|.+|...| ++++|+.+|.++.. ..+.....++.+|.+|... +
T Consensus 157 ~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCC
Confidence 4443333222221110 112236666666666666 66666666666665 3344444445666666544 5
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC-----CHHHH
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHI-Y--VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-----DTGAA 428 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~-----~~~~A 428 (1088)
++++|+.+|+++. |+++.+++.+|.+ | ...+++++|+.+|+++... .++.+++.||.+|..| ++.+|
T Consensus 232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666666665 5566666666665 3 3455666666666666543 3566666666666433 66666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 001392 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALG 476 (1088)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~al~ 476 (1088)
+.+|+++. +. .+..++++|.+|.. ..++.+|+.+|+++..
T Consensus 307 ~~~~~~Aa---~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 307 EAHFEKAV---GR-----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHTTT---TT-----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHh---CC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 66666554 11 35556666655554 2366666666666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=3.2e-21 Score=200.94 Aligned_cols=199 Identities=18% Similarity=0.116 Sum_probs=148.0
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1088)
|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888 67788888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 205 LCRYKL-----------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 205 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
.++... |++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|+++++++ .++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcc-cchHHHHH
Confidence 888888 888888888888888888888888888888888877 888888888888887 77777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1088)
+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|+..|.++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777777666543 455566666666666666666666666554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=3.9e-21 Score=200.32 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..++..+|.++...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 5 ~~~~~~lg~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp CHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 457788899998888776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 163 PALLGQACVEFNR-----------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 163 ~a~~~la~~~~~~-----------g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
.+++.+|.++... |++++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++++ +++
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 9999999999999 99999999999999999999 7789999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 232 ~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
.+++.+|.++...|+ +++|+..|++++..+|+++.++..++.++...|++++|+..++++-
T Consensus 152 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999988654
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=6.7e-21 Score=219.58 Aligned_cols=316 Identities=17% Similarity=0.193 Sum_probs=232.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----Ch
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CP 196 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~ 196 (1088)
.....++.+|.+++..|++++|+.+|++++...|.++ .++..+|.+++..|++++|+..|++++...+. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4556778888888999999999999999888888874 57788888888888888888888888776311 12
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhchHHh----------HHHHHHHHHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAG----------IRKGMEKMQRA 260 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~~~~~~----------~~~Al~~~~~a 260 (1088)
..++..+|.++..+|++++|+..|.+++.+.|.. ..++..+|.++...|+... ..++...
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 5567778888888888888888888888776532 2245555555554443000 0000000
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001392 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1088)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1088)
++.|+.++..++... ...+....++..+|.++...|++++|+.+|.+++...+.
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 444444444444321 122334567888899999999999999999998874432
Q ss_pred C---CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 338 P---HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 338 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
. +....++..+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|++++|+.+|.+++.+.+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 2 2234478889999999999999999999998876544 678899999999999999999999999987544
Q ss_pred C------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 001392 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 409 ~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
. ..++..+|.++ ..|++++|+.++++++.+.+..+... ...++..+|.++...|+...+.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 3 67888999999 99999999999999999987754322 2578888999999988764433
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.1e-19 Score=198.20 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=94.5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001392 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (1088)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 127 (1088)
...+..|+|..|+..++.....++. ........++.+|+.+|+.. .|+..++. .+|..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~--------~~~e~~~~l~r~yi~~g~~~-----------~al~~~~~---~~~~~ 64 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE--------RDVERDVFLYRAYLAQRKYG-----------VVLDEIKP---SSAPE 64 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH--------HHHHHHHHHHHHHHHTTCHH-----------HHHHHSCT---TSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch--------hhHHHHHHHHHHHHHCCCHH-----------HHHHHhcc---cCChh
Confidence 4456667777777766665444321 12334455566666666554 55554433 23444
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
..++..++..+...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++ |.+ ..++..+|.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHH
Confidence 455555666666666666666666666654 466666666666666666666666666665 554 455666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
++..+|++++|+..|++++..+|++..
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~ 165 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATL 165 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHH
Confidence 666666666666666666666666543
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=3e-20 Score=202.75 Aligned_cols=261 Identities=10% Similarity=0.026 Sum_probs=169.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
...++..|+|..|+..++++...+|.+ ..+...++.+|+..|+++.|+..++.. +|.. ..++..++..+...|++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-LQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-HHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-HHHHHHHHHHHcCCCcH
Confidence 455667788888887777766666655 346677777777888887777766541 3332 44556677777777777
Q ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 214 GKARQAFQRALQL--DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1088)
Q Consensus 214 ~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1088)
++|+..+++++.. +|+++.+++.+|.++...|+ +++|+..|.+ |.++.++..++.++...|++++|+..+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~---~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN---PDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC---HHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC---HHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777764 47777777777777777777 7777777776 667777777777777777777777777
Q ss_pred HHHHhhcCCCCCchHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 292 ETALAVTNHGPTKSHSYYNLA--RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
+.++... |.........+ ..+...|++++|+.+|++++. ..|..+.+++.+|.++...|++++|+..|++++
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD---KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7666553 22222221111 222334666666666666665 344556666666666666666666666666666
Q ss_pred HhCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHH
Q 001392 370 EIYPDNCETLKALGHIYVQLGQIEK-AQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~k~l~~~p~~~~~~ 413 (1088)
..+|+++.++.++|.++...|+..+ +..++++++.++|+++.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 6666666666666666666666654 3456666666666666543
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=220.79 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=215.5
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCC
Q 001392 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 408 (1088)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~k~l~~------~p~ 408 (1088)
......++.+|.++...|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|.+++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44555677788888888888888888888888887763 57778888888888888888888888766 244
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 001392 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 466 (1088)
Q Consensus 409 ~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------------------~~~ 466 (1088)
...++..+|.++ ..|++++|+.++.+++.+.+..+... ...++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 467788888888 88899999999998888877653321 14688899999999999 999
Q ss_pred HHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHH
Q 001392 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546 (1088)
Q Consensus 467 A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 546 (1088)
|+.+|.+++...... ...+....++.++|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-------------------------------------GDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------------------------cCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999999888742100 0234466789999999999999999999
Q ss_pred HHHHHHHHcCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC------hhHHHhhhhhhhcccchHHHHH
Q 001392 547 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 547 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 614 (1088)
+|.+++...|.. ..++..+|.++...|++++|+.++.+++.+.|.. ..++..+|.++...|++++|+.
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876543 3489999999999999999999999999887665 5688889999999999999999
Q ss_pred HHHHhhhcCCCCC-----hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 615 TFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 615 ~~~~al~~~~~~d-----~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
.|.+++...+... ..++..+|.+ |... |++++|+.+|++++..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNA-YTAL------------GNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHH
Confidence 9998887543211 2234444444 4444 5555555555555444
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.85 E-value=3e-20 Score=214.80 Aligned_cols=279 Identities=16% Similarity=0.071 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc---
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--- 524 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 524 (1088)
...+..+|..++..|++++|+.+|++++... |.+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 84 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-------------------------------------------TEDLRT 84 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------------------------------------------ccChhH
Confidence 4567789999999999999999999999842 223
Q ss_pred -hHHHHhHHHHHHhcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------CCC
Q 001392 525 -VTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGK 591 (1088)
Q Consensus 525 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~ 591 (1088)
..+++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++.+++.+ .|.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 368899999999999999999999999987 5777899999999999999999999999999998 455
Q ss_pred ChhHHHhhhhhhhcccc-----------------hHHHHHHHHHhhhcCCC-----CChHHHHHhhhHHHHHHhhhhhcC
Q 001392 592 YPNALSMLGDLELKNDD-----------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRA 649 (1088)
Q Consensus 592 ~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~ 649 (1088)
...++..+|.+|...|+ +++|+..|.+++...+. ....++..+|.+ |...
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~------- 236 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT-------
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc-------
Confidence 66689999999999999 99999999998875321 123477788888 8888
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCH------HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchhHHHHHHH
Q 001392 650 PKLEATHLEKAKELYTRVIVQHTSNL------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAH 722 (1088)
Q Consensus 650 ~~~~~~~~~~A~~~~~~al~~~p~~~------~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~la~ 722 (1088)
|++++|+.+|++++...|... .++..+|.++...|++++|+.+|++++...+... ......++.++|.
T Consensus 237 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 237 -----GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999877533 3889999999999999999999999999886321 1122678999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 723 VYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 723 ~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
+|..+|++++|+.+|++++...+...+ ..++..+|.+|...|++.+|+.+|++++.+.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998655444 668889999999999999999999999999864
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=7.7e-20 Score=204.24 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
...+...|..++..|++++|+.+|++++...+. ..+....+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 45 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------------------------DLKTLSAI 45 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc---------------------------------------cHHHHHHH
Confidence 345677899999999999999999999984210 00112578
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh------H
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------A 595 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~ 595 (1088)
+..+|.++...|++++|+.++.+++.. .|....++..+|.++...|++++|+.++.+++.+.|.... +
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 889999999999999999999999876 4456789999999999999999999999999998765433 8
Q ss_pred HHhhhhhhhcccc--------------------hHHHHHHHHHhhhcCCC-----CChHHHHHhhhHHHHHHhhhhhcCh
Q 001392 596 LSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAP 650 (1088)
Q Consensus 596 ~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~~ 650 (1088)
+..+|.++...|+ +++|+..|.+++...+. ....++..+|.+ |...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~-------- 196 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL-------- 196 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH--------
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh--------
Confidence 8899999999999 99999999998775311 123467778888 8888
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC------HHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchhHHHHHHHH
Q 001392 651 KLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHV 723 (1088)
Q Consensus 651 ~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~la~~ 723 (1088)
|++++|+.+|++++...|.. ..++..+|.++...|++++|+.+|++++...+... ......++.++|.+
T Consensus 197 ----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 197 ----GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999999999876542 34889999999999999999999999999876321 11226789999999
Q ss_pred HHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 724 YFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 724 ~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
|..+|++++|+.+|++++..++...+ ..++..+|.+|...|++++|..+|++++.+.+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765444 668889999999999999999999999998875
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=1.8e-19 Score=195.37 Aligned_cols=248 Identities=14% Similarity=0.114 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 001392 106 KEEHFILATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~----p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 181 (1088)
..++|++|+..|.+++... |.++.+++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4688999999999999973 456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
+..|++++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++......++.. ...|+ +.+|+..+.+++
T Consensus 97 ~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHHHH
Confidence 99999999999998 77899999999999999999999999999999998776666544 45566 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001392 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1088)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1088)
...|.+...+. ++.++...++...|+..+..++...+. .+..+.+++.+|.++...|++++|+.+|.+++. ..|.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 247 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVH 247 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCch
Confidence 99888765543 566666667777777777666543211 011234555555555555555555555555554 2222
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 341 FIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
. +...+.++...|++++|+..|
T Consensus 248 ~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T---CHHHHHHHHHHHHHHHC----
T ss_pred h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 222344555555555555544
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.83 E-value=1.3e-19 Score=209.50 Aligned_cols=286 Identities=20% Similarity=0.226 Sum_probs=216.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQL------DPE 229 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~ 229 (1088)
+.....++.+|.+++..|+|++|+.+|++++...|.++. .+++.+|.++...|++++|+..|++++.+ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344667788899999999999999999999999888742 56788899999999999999999998887 455
Q ss_pred CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHH
Q 001392 230 NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1088)
Q Consensus 230 ~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 309 (1088)
...++..+|.++...|+ +.+|+..|.+++...+.. ...+....++.
T Consensus 125 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~-------------------------------~~~~~~~~~~~ 170 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGR---FDEAAICCERHLTLARQL-------------------------------GDRLSEGRALY 170 (411)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHH-------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHh-------------------------------hchHHHHHHHH
Confidence 56667777777777777 777777777776652110 11122335566
Q ss_pred HHHHHHHhcCC-----------------HHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 310 NLARSYHSKGD-----------------YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 310 ~la~~~~~~g~-----------------~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
.+|.+|...|+ +++|+.+|.+++... +..+....++..+|.++...|++++|+.+|++++
T Consensus 171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66666666666 677777776665422 2233445577888888888888888888888888
Q ss_pred HhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 370 EIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 370 ~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
...+.. ..++..+|.+|...|++++|+.+|++++...|.. ..++..+|.++ ..|++++|+.++++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775533 2378888999999999999999999988876643 67888899998 8999999999999999
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 437 TLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 437 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
.+.+..+.. ....++..+|.++...|++++|+.+|++++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 887765322 124688889999999999999999999999854
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=3.4e-19 Score=189.11 Aligned_cols=215 Identities=19% Similarity=0.218 Sum_probs=127.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.. ..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHH
Confidence 345677788888888888888888888888888888888888888888888888888888888888777 6667778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..+.+++..+|.++.++.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~-------------- 163 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ---PKLALPYLQRAVELNENDTEARF-------------- 163 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHCTTCHHHHH--------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccHHHHH--------------
Confidence 8888888888888888888777777777777777777776 77777777777776665553333
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1088)
.+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|+
T Consensus 164 -----------------------~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 164 -----------------------QFGMCLANEGMLDEALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp -----------------------HHHHHHHHHTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred -----------------------HHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 333333344444444444444443 223334444455555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHHH
Q 001392 367 KVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~ 385 (1088)
+++..+|++..++..++.+
T Consensus 218 ~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC-
T ss_pred HHHccCcchHHHHHHHHHH
Confidence 5555555555554444443
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=5.9e-19 Score=197.03 Aligned_cols=282 Identities=21% Similarity=0.228 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGIGLCRYKLGQLGKARQAFQRALQL------DPENVE 232 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 232 (1088)
...++..|.+++..|++++|+..|++++...|.++ ..++..+|.++...|++++|+..|.+++.+ .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 45677888888888888888888888888888874 356778888888888888888888888776 233345
Q ss_pred HHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 001392 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312 (1088)
Q Consensus 233 a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la 312 (1088)
++..+|.++...|+ +++|+..+.+++...|... ..+....++..+|
T Consensus 85 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~-------------------------------~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 85 ASGNLGNTLKVLGN---FDEAIVCCQRHLDISRELN-------------------------------DKVGEARALYNLG 130 (338)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhc-------------------------------CchHHHHHHHHHH
Confidence 55666666666666 6666666666655433211 1111234666777
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 313 RSYHSKGD--------------------YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 313 ~~~~~~g~--------------------~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
.++...|+ +++|+.+|.+++... +..+....++..+|.++...|++++|+.++++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777 777777777766522 2233445578888888889999999999998888
Q ss_pred HhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 370 EIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 370 ~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
...+.. ..++..+|.++...|++++|+.++.+++...|.. ..++..+|.++ ..|++++|+.++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 764332 3488889999999999999999999998876554 67888899999 9999999999999999
Q ss_pred HHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 437 TLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 437 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
...+..+... ...++..+|.++...|++++|..+|++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9877654322 1467888999999999999999999999885
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=7.7e-18 Score=182.47 Aligned_cols=233 Identities=18% Similarity=0.217 Sum_probs=160.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAI 199 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1088)
+|.++.+++.+|.+++..|++++|+.+|++++. |.++.+++.+|.++.. .+++++|+.+|++++..+ + +.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C-HHH
Confidence 467777888888888888888888888888776 6677778888888887 788888888888877764 3 566
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 200 RLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 200 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
++.+|.++.. .+++++|+..|++++.. +++.+++.+|.++.. .++ +++|+.+|++++..+ ++
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~--- 146 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD---FKKAVEYFTKACDLN--DG--- 146 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHHHHTT--CH---
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHhcC--cH---
Confidence 7777777777 77777777777777765 367777777777776 666 677777777666643 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
.+++.+|.+|.. .+++++|+.+|.+++.. ....+++.
T Consensus 147 ----------------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 187 (273)
T 1ouv_A 147 ----------------------------------DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFN 187 (273)
T ss_dssp ----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHH
Confidence 445555555555 66666666666666652 23456666
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 348 LGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQA 412 (1088)
Q Consensus 348 la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~k~l~~~p~~~~~ 412 (1088)
+|.+|.. .+++++|+.+|+++++..| +.++..+|.+|.. .+++++|+.+|++++...|.+...
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777776 6777777777777766643 6666777777776 677777777777777776654433
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.4e-18 Score=191.99 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=214.4
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA-------KGEV-------EQASSAFKIVLE-ADRDNVPALLGQACVEFNR 175 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~ 175 (1088)
.+|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. .+|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 589999999999999999999999999874 5885 999999999999 6999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hchHHhHHHHH
Q 001392 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 254 (1088)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~~~Al 254 (1088)
|++++|...|++++...|.+...++..+|.++...|++++|+..|+++++..|.+..++...+.+... .|+ +++|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Confidence 99999999999999999988433899999999999999999999999999999998888877766543 577 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
..|+++++.+|.++.++..++.++...|+++.|..+|++++.....+| ....+|..++..+...|+++.|..++.++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987533334 3567888888888889999999999999888
Q ss_pred hcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001392 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1088)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1088)
..|..+.... ++.+ ....+++.++|.++..+..||.
T Consensus 270 ~~p~~~~~~~----~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 270 AFREEYEGKE----TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HTTTTTSSCH----HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred Hcccccccch----HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 6554333221 1111 1111455677888888777663
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=8.7e-18 Score=182.05 Aligned_cols=226 Identities=18% Similarity=0.248 Sum_probs=182.9
Q ss_pred HHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALL 166 (1088)
Q Consensus 91 ~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~ 166 (1088)
..++.+|... ...+++++|+.+|.+++. |.++.+++.+|.++.. .|++++|+.+|++++..+ ++.+++
T Consensus 7 ~a~~~lg~~~----~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKS----YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHH----HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 4566677666 335789999999999998 7889999999999999 999999999999999885 899999
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 167 GQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 167 ~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
.+|.++.. .+++++|+.+|++++..+ + +.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C-ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99999999 999999999999999974 4 6789999999999 999999999999999976 688899999
Q ss_pred HHHHh----hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 001392 239 VMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1088)
Q Consensus 239 ~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~ 314 (1088)
.++.. .++ +++|+.+|++++... ++ .+++.+|.+
T Consensus 154 ~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~-------------------------------------~a~~~lg~~ 191 (273)
T 1ouv_A 154 SLYDAGRGTPKD---LKKALASYDKACDLK--DS-------------------------------------PGCFNAGNM 191 (273)
T ss_dssp HHHHHTSSSCCC---HHHHHHHHHHHHHTT--CH-------------------------------------HHHHHHHHH
T ss_pred HHHHcCCCCCCC---HHHHHHHHHHHHHCC--CH-------------------------------------HHHHHHHHH
Confidence 99988 777 888999888887653 33 445555556
Q ss_pred HHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 001392 315 YHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNC 376 (1088)
Q Consensus 315 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~ 376 (1088)
|.. .+++++|+.+|.+++.. ....+++.+|.+|.. .+++++|+.+|+++++..|...
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL-----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 666 66666666666666652 125566667777776 6777777777777777665443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=1.1e-19 Score=197.02 Aligned_cols=231 Identities=14% Similarity=0.123 Sum_probs=159.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 135 GQLLLAKGEVEQASSAFKIVLEAD----RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
+..+...|++++|+..|.+++... |.++.+++.+|.+++..|++++|+..|++++..+|.+ ..++..+|.++...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHc
Confidence 334455688999999999999873 4567889999999999999999999999999999998 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
|++++|+..|++++.++|.++.++..+|.++...|+ +++|+..|.+++..+|.++.....++.+ ...|+++.|...
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999887555444332 444555555555
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
+..++...+.. ... ..++..+...++.++|+..+.+++...+. .+....+++.+|.++...|++++|+.+|++++
T Consensus 167 ~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKE---QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCC---STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcc---hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555433221 111 22444444555555555555554431000 00112334444444444444444444444444
Q ss_pred HhCCC
Q 001392 370 EIYPD 374 (1088)
Q Consensus 370 ~~~p~ 374 (1088)
..+|.
T Consensus 243 ~~~p~ 247 (275)
T 1xnf_A 243 ANNVH 247 (275)
T ss_dssp TTCCT
T ss_pred hCCch
Confidence 44443
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=1.2e-18 Score=176.22 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..++..||.+|...|+.+ +|+..|+++++++|+++.+++.+|.+|...|++++|+..+..++...|+++
T Consensus 5 ~~iy~~lG~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFD-----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 456677777777766655 788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.++..+|.++...+++..|+..+.+++...|.+ ..++..+|.++..+|++++|+..|+++++++|.++.++..+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 888888888888888888888888888888887 6677888888888888888888888888888888888888888888
Q ss_pred hhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
..|+ +++|+..|+++++++|+++
T Consensus 153 ~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred HCCC---HHHHHHHHHHHHhCCccCH
Confidence 8887 8888888888888887654
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.81 E-value=7.1e-16 Score=184.93 Aligned_cols=451 Identities=9% Similarity=-0.052 Sum_probs=327.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYKRA 188 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~a 188 (1088)
+-+..|+..+..+|.+...|..++..+...+.+..|...|++++...|.+...|...+......++ +..+..+|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 557788999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCC--CChhHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhc------hHH
Q 001392 189 LQVHP--SCPGAIRLGIGLCRYKLGQL--------GKARQAFQRALQL----DPENVEALVALAVMDLQAN------EAA 248 (1088)
Q Consensus 189 l~~~p--~~~~~~~~~lg~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~a~~~la~~~~~~~------~~~ 248 (1088)
+...| .+ ..+|..........++. +....+|++|+.. +|.....|.....+....+ ..+
T Consensus 130 l~~~~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 130 LSKELGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp TCSSSCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 99984 34 44666655545555443 3445888988874 6767777777766544211 112
Q ss_pred hHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 001392 249 GIRKGMEKMQRAFEIYPYC-A-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1088)
Q Consensus 249 ~~~~Al~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1088)
.++.+..+|.+++.+ |.. . .+|......-...+.. .+..++ . .....|..|..
T Consensus 209 ~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~~~--------------------~---e~~~~y~~Ar~ 263 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARRHI--------------------G---ELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHHHH--------------------H---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHHHH--------------------H---HhhHHHHHHHH
Confidence 377888999999864 432 2 2221111110000000 010000 0 11123444444
Q ss_pred HHHHHHHh---c----CCC---------C-------CchhhHhhHHHHHHHcC-------CHHHHHHHHHHHHHhCCCcH
Q 001392 327 YYMASVKE---I----NKP---------H-------EFIFPYYGLGQVQLKLG-------DFRSALTNFEKVLEIYPDNC 376 (1088)
Q Consensus 327 ~~~~al~~---~----~~~---------~-------~~~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~ 376 (1088)
.|...... + +.. | .....|......-...+ ........|++++...|.++
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~ 343 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP 343 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence 44332211 0 000 0 00112222222221111 13456788999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC------CC---
Q 001392 377 ETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG------EE--- 445 (1088)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~-~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~------~~--- 445 (1088)
.+|+..+..+...|+.+.|+ .+|.+++...|.+...|+.++.+. ..|+++.|..+|++++...+... .+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999999999999999997 999999999999999999999999 99999999999999998753110 01
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCC
Q 001392 446 --------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 517 (1088)
Q Consensus 446 --------~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1088)
....+|...+.+..+.|..+.|..+|.+|+...
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--------------------------------------- 464 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--------------------------------------- 464 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---------------------------------------
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------------------------------------
Confidence 123567778888888999999999999998731
Q ss_pred cCCCCcchHHHHhHHHHHHhcC-CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---CCh
Q 001392 518 VELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG---KYP 593 (1088)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~ 593 (1088)
++....++...|.+....+ +++.|..+|+.+++..|+.+..+...+......|+.+.|..+|++++...| ...
T Consensus 465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 1123455666666666655 489999999999999999999999999999999999999999999999988 356
Q ss_pred hHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHH
Q 001392 594 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (1088)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a 630 (1088)
.+|..+..+-...|+.+.+..++.++....|+.+...
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 6888999999999999999999999999998865543
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=1.8e-18 Score=202.80 Aligned_cols=238 Identities=12% Similarity=0.015 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHhchhhhh---hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 001392 83 IAILNALGVYYTYLGKIETK---QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEAD 158 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~---~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~ 158 (1088)
+..+..+...|+........ ...-.+.+.+|+..+..+....|.++.+++.+|.++...|++ ++|+.+|++++..+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~ 133 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE 133 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC
Confidence 33444455555554433321 112356688999999999999999999999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~ 229 (1088)
|+++.+++.+|.+++..|++++|+..|++++..+|+ ..++..+|.++..+ |++++|+..|+++++++|+
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998 47899999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHhh--------chHHhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001392 230 NVEALVALAVMDLQA--------NEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1088)
Q Consensus 230 ~~~a~~~la~~~~~~--------~~~~~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 298 (1088)
+..+|..+|.++... |+ +++|+..|++++.++| .++.+++.+|.+|...|++++|+..+.+++...
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999988 77 9999999999999999 888777777777777777777777777776554
Q ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1088)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1088)
|....++..++.++...|++++|+..+
T Consensus 289 ---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 289 ---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666777776666666666544
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=1.3e-18 Score=184.70 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
...+..+|.+|...|. +.+|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+.
T Consensus 23 ~~~~~~~a~~~~~~~~-----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 91 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGD-----------YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA 91 (243)
T ss_dssp ------------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhC-----------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch
Confidence 3445556666665555 44999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++...|.+..++..+|.++.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 7789999999999999999999999999999999999999999999
Q ss_pred hhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~ 316 (1088)
..|+ +++|+..|.+++..+|.++.++..++.++...|++++|...+++++... |....++..++.+..
T Consensus 171 ~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 171 NEGM---LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHTC---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC---TTCHHHHHHHTC---
T ss_pred HcCC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC---cchHHHHHHHHHHHh
Confidence 9999 9999999999999999999888888888888888888888888887654 444566655554443
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=3.6e-18 Score=182.44 Aligned_cols=213 Identities=19% Similarity=0.148 Sum_probs=151.9
Q ss_pred cCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 123 IDMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 123 ~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
.+|.. +.+++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+ ..++.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN-ARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHH
Confidence 45554 67888899999999999999999999999999899999999999999999999999999999988887 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
.+|.++...|++++|+..|.+++. ..|.+..++..+|.++...|+ +++|+..|.+++..+|.++.++..+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l----- 181 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK---PAQAKEYFEKSLRLNRNQPSVALEM----- 181 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHH-----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcccHHHHHHH-----
Confidence 888889889999999988888888 677777777777777777777 7777777777777776665444333
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHH
Q 001392 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1088)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1088)
|.++...|++++|+.+|.+++. ..|....++..++.++...|+++
T Consensus 182 --------------------------------a~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 182 --------------------------------ADLLYKEREYVPARQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp --------------------------------HHHHHHTTCHHHHHHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHH
Confidence 3344444444444444444443 22333444444555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHH
Q 001392 360 SALTNFEKVLEIYPDNCETL 379 (1088)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~ 379 (1088)
+|..++++++...|+++.+.
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 55555555555555544433
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=7.8e-18 Score=176.03 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.++.+++.+|.+++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHH
Confidence 455666667777777777777777777777777777777777777777777777777777777777666666 5556666
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 204 GLCRYKL-GQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 204 g~~~~~~-g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
|.++... |++++|+..|++++. ..|.+..++..+|.++...|+ +++|+..|.+++..+|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ---FGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 6666666 666666666666666 344444555555555555555 5555555555555544443
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.1e-17 Score=174.82 Aligned_cols=218 Identities=17% Similarity=0.091 Sum_probs=147.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.|.++.+++.+|.+++..|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|.+++..+|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34445555555555555555555555555555555555 44455555555555555555555555555555555555555
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 317 (1088)
|.++...+ |+++.|+.+++.++. .+..|....+++.+|.++..
T Consensus 83 ~~~~~~~~------------------------------------~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 83 GWFLCGRL------------------------------------NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHTTT------------------------------------CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc------------------------------------CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHH
Confidence 55544440 444444444444444 22334555777888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcCCHHHHH
Q 001392 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQ 396 (1088)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~ 396 (1088)
.|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++...| .+..++..++.++...|+.+.|.
T Consensus 126 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp TTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 8888888888888887 3466677888889999999999999999999988888 88888888888888889999999
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 001392 397 ELLRKAAKIDPRDAQAFIDL 416 (1088)
Q Consensus 397 ~~~~k~l~~~p~~~~~~~~l 416 (1088)
.+++.+....|+++.+...+
T Consensus 203 ~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHh
Confidence 99888888888888776544
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=6.2e-18 Score=180.65 Aligned_cols=211 Identities=16% Similarity=0.104 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|.+++..+|.++.++..++.++
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME---PKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444 44444444444444554454555555555
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCH
Q 001392 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1088)
Q Consensus 279 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1088)
...|++++|+.++.+++. .+..|....++..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCCH
Confidence 555555555555555544 223455567788888888889999999999999887 4466778899999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1088)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~l 416 (1088)
++|+.+|++++...|.+..++..++.++...|++++|..++++++...|+++.+...+
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776543
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=7.5e-18 Score=170.41 Aligned_cols=168 Identities=21% Similarity=0.248 Sum_probs=155.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
.++.+|+.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.. ..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999 778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
++...++++.|...+.+++.++|.+..++..+|.++...|+ +++|+..|+++++.+|.++.++..+|.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999 999999999999999999988888888777777777
Q ss_pred HHHHHHHHHHhh
Q 001392 286 LVEQLTETALAV 297 (1088)
Q Consensus 286 ~A~~~~~~~l~~ 297 (1088)
+|+..|++++..
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777777754
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.4e-17 Score=181.90 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-HCCCChhHHHhhhhhhhcc
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNL-------QLSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~l~~al~-~~p~~~~~~~~l~~~~~~~ 606 (1088)
..|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999864 5886 899999999999 7999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~ 686 (1088)
|++++|...|++++...|.....++..+|.+ +... |++++|..+|+++++.+|.+..++.+.+.+..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999998876333478888888 7777 99999999999999999998888877776654
Q ss_pred h-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhh
Q 001392 687 E-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEA 763 (1088)
Q Consensus 687 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~--~~~~~l~~La~~~~~~ 763 (1088)
. .|++++|+.+|+++++..| +++.+|.++|.++..+|++++|+.+|++++...+.+ ....++..++..+...
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 3 7999999999999999998 789999999999999999999999999999963223 3588999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCChhHH
Q 001392 764 EQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 764 g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
|+++.|..+++++++..|+++...
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~~~~ 278 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred CCHHHHHHHHHHHHHHcccccccc
Confidence 999999999999999999876543
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=4.6e-18 Score=199.35 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=162.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
+.+++|+..+..+....|.++.+++.+|.++...|+| ++|+..|++++..+|.+ ..+++.+|.+|+..|++++|+..|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578888999998888999999999999999999999 99999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhh---------chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 221 QRALQLDPENVEALVALAVMDLQA---------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~---------~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1088)
+++++++|+ ..++..+|.++... |+ +++|+..|++++.++|.++.+++.+|.+|...
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------- 226 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH---VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL---------- 226 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------
Confidence 999999998 79999999999998 77 99999999999999999887666666555332
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 001392 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1088)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1088)
++..+. ..|++++|+..|.+++.. .| ....+++.+|.+|...|++++|+.+|+++
T Consensus 227 ----------------~~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 227 ----------------YFNTGQ---NPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ----------------HHHTTC---CHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHhhcc---ccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000000 013455555555555542 23 44445555555555555555555555555
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1088)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (1088)
+..+|++..++..++.++...|++++|+..+
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555554443
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=2.4e-17 Score=188.44 Aligned_cols=167 Identities=13% Similarity=0.068 Sum_probs=74.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC---CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC----CchhhHh
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNH---GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH----EFIFPYY 346 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~ 346 (1088)
+|.+++..|++++|+..+.+++..... .+..+.+++.+|.+|...|++++|+.+|.+++...+..+ ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455555555555555555555543221 112334455555555555555555555555554322211 1223344
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CCCHHHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK-----ID-PRDAQAFI 414 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~-----~~-p~~~~~~~ 414 (1088)
.+|.++...|++++|+.+|.+++...+.. ..++..+|.+|...|++++|+.+|.+++. .+ |..+.++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 44555555555555555555544432211 12444444444444444444444444444 22 33344444
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001392 415 DLGELL-ISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 415 ~la~l~-~~~~~~~A~~~~~~a~~~~~ 440 (1088)
.+|.++ ..|++++|+.++++++.+.+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 444444 44444444444444444433
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=1e-17 Score=191.56 Aligned_cols=247 Identities=14% Similarity=0.102 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC-------c
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------N 375 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~ 375 (1088)
..++.+|..+...|++++|+.+|.+++..... .+....+++.+|.++...|+++.|+.++.+++...+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35666999999999999999999999975332 3335678999999999999999999999999987433 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC-CCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVP 447 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~ 447 (1088)
..++..+|.+|...|++++|+.+|.+++.+.|.. ..++..+|.++ ..|++++|+.+|++++.+.+..+. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 4689999999999999999999999999875433 35899999999 999999999999999999887655 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
+.++.++|.++...|++++|+.+|++++...+.. .++.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~~~ 305 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------------GDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------------------------------CCHHHHHH
Confidence 7899999999999999999999999999853210 12233344
Q ss_pred HHhHHHHHHhcCC---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 001392 528 LFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (1088)
Q Consensus 528 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 591 (1088)
+..++.++...|+ +.+|+.++++. ...|....++..+|.++...|++++|..++++++.+...
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6779999999999 77787777765 334455678889999999999999999999999887643
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=5.1e-17 Score=170.65 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=128.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+.++..++.+|.+++..|++++|+..|.+++..+| .+..+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-ANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch-HHHHHHH
Confidence 55678899999999999999999999999999998 888888889999999999999999999999999987 7788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENV-------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--CAMALNYL 274 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~--~~~~~~~l 274 (1088)
|.++..+|++++|+..|++++.++|+++ .++..+|.++...|+ +++|+..|.++++.+|. ++.++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN---IEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc---HHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 9999999999999999999999999988 557777777777777 77788888877777777 66666666
Q ss_pred HHHHHhc
Q 001392 275 ANHFFFT 281 (1088)
Q Consensus 275 a~~~~~~ 281 (1088)
|.+|+..
T Consensus 160 ~~~~~~~ 166 (228)
T 4i17_A 160 GVLFYNN 166 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.77 E-value=9.6e-15 Score=175.14 Aligned_cols=476 Identities=10% Similarity=0.030 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ---HFLVEQL 290 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~ 290 (1088)
.+-+..|++.+..+|.+...|..++......+. +..+...|++++...|.....|...+......|. +..+..+
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~---~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQ---WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445667788888888888888888887777766 7788888888888888888888777777777776 7777777
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCH----HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDY----EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1088)
|++++.....+ .....|..........++. +.+. +.....|+
T Consensus 126 feRal~~~~~~-~sv~LW~~Yl~f~~~~~~~~~~~~~~r---------------------------------~~vr~~FE 171 (679)
T 4e6h_A 126 LARCLSKELGN-NDLSLWLSYITYVRKKNDIITGGEEAR---------------------------------NIVIQAFQ 171 (679)
T ss_dssp HHHHTCSSSCC-CCHHHHHHHHHHHHHHSCSTTTHHHHH---------------------------------HHHHHHHH
T ss_pred HHHHHHhcCCC-CCHHHHHHHHHHHHHhcccccccchhH---------------------------------HHHHHHHH
Confidence 77777543211 3344554444333333322 1111 11223444
Q ss_pred HHHHh----CCCcHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHH-hcCCHHHHHH
Q 001392 367 KVLEI----YPDNCETLKALGHIYV---------QLGQIEKAQELLRKAAKIDPRD-A-QAFIDLGELL-ISSDTGAALD 430 (1088)
Q Consensus 367 ~~l~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~k~l~~~p~~-~-~~~~~la~l~-~~~~~~~A~~ 430 (1088)
.++.. ++.+..+|........ ..++.+.+..+|.+++.+ |.. . ..|......- ..+.. .+..
T Consensus 172 rAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~ 249 (679)
T 4e6h_A 172 VVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARR 249 (679)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHH
T ss_pred HHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHH
Confidence 44432 3333444444333322 233466777788887753 432 2 1221111111 00000 0000
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh-cccccchhhhhhhhhHHHhhhhhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL-LDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
.+ . -...+|..|...+...-.......- ....... .+
T Consensus 250 ~~----------------------~---e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~----------------~~- 287 (679)
T 4e6h_A 250 HI----------------------G---ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ----------------AT- 287 (679)
T ss_dssp HH----------------------H---HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT----------------CC-
T ss_pred HH----------------------H---HhhHHHHHHHHHHHHHHHHHHhHhhcccccccc----------------ch-
Confidence 00 0 0112333444444332211000000 0000000 00
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcC-------CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHH-HH
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIH-------DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-EL 581 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~ 581 (1088)
.................|......-...+ .......+|++++...|.++..|+..+..+...|+.++|. .+
T Consensus 288 -~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 -ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp -TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred -hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 00000000000012234444443332221 1234567899999999999999999999999999999997 99
Q ss_pred HHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC-----------CCC----------ChHHHHHhhhHHHH
Q 001392 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----------DGK----------DSYATLSLGNWNYF 640 (1088)
Q Consensus 582 l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------~~~----------d~~a~~~lg~~~y~ 640 (1088)
|.+++...|.+..+|..++.+....|+++.|..+|++++... |.. ....|+..+.+ ..
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-er 445 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MK 445 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HH
Confidence 999999999999999999999999999999999999998752 221 11233333322 22
Q ss_pred HHhhhhhcChhHHHHHHHHHHHHHHHHHhc-CCCCHHHHhhHHHHHHhcC-CchHHHHHHHHHHHHhcCCCCCCchhHHH
Q 001392 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSNLYAANGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWI 718 (1088)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~l~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 718 (1088)
.. +..+.|..+|.++++. .+.....+...|.+....+ +++.|..+|+.+++..| +++..|.
T Consensus 446 R~------------~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~ 508 (679)
T 4e6h_A 446 RI------------QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYIN 508 (679)
T ss_dssp HH------------HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHH
T ss_pred Hc------------CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHH
Confidence 22 7789999999999998 4444555666666666655 59999999999999998 7788999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhH
Q 001392 719 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 719 ~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
.++......|+...|..+|++++...+.+.. ..++......-...|....+.++++++.+..|+++.+...
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999999999999999998543223 5667777777778899999999999999999998654433
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=3.4e-17 Score=172.04 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM-HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..+..+|.+|+..|+.. +|+..|++++..+| .++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 8 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYA-----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHccCHH-----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 56778899998888766 99999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEA 233 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a 233 (1088)
.++..+|.++...|++++|+..|++++...|++ + .+++.+|.++..+|++++|+..|+++++++|+ ++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999998 4 56899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 001392 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313 (1088)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~ 313 (1088)
+..+|.++...|. ..+.++..+.+..+..+ .+......+.+++|+..+++++... |....+...++.
T Consensus 156 ~~~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGA--------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHH
Confidence 9999999988765 23344444444443222 2333344555666666666666554 444455555554
Q ss_pred HH
Q 001392 314 SY 315 (1088)
Q Consensus 314 ~~ 315 (1088)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=3.8e-17 Score=175.65 Aligned_cols=218 Identities=20% Similarity=0.239 Sum_probs=154.9
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-
Q 001392 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP- 196 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~- 196 (1088)
...+|.++..++.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.+++..|+|++|+..|++++...|+++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578888889999999999999999999999999988888 88889999999999999999999999999888652
Q ss_pred -hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 197 -GAIRLGIGLCRYK--------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 197 -~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
+.+++.+|.|+.. +|++++|+..|++++..+|++..+...+..+....+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~--------------------- 146 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK--------------------- 146 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH---------------------
Confidence 4567888888888 8888888888888888888776554433332221111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
....++.+|.+|...|++++|+..|.+++...+..+....+++.
T Consensus 147 ------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 147 ------------------------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 01235556666666666666666666666654444445566666
Q ss_pred HHHHHHHc----------CCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCHHHH
Q 001392 348 LGQVQLKL----------GDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKA 395 (1088)
Q Consensus 348 la~~~~~~----------g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A 395 (1088)
+|.+|... |++++|+.+|++++..+|+++ .+...++.++...++++.+
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 77766655 777777777777777777763 4555666666666655543
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=3.8e-17 Score=198.55 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=162.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1088)
..|+++.++..+|.+|..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++|+..|+++++++|+++.++..++.++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 001392 283 QHFLVEQLTETALAV 297 (1088)
Q Consensus 283 ~~~~A~~~~~~~l~~ 297 (1088)
++++|...+++++..
T Consensus 160 ~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 160 DWTDYDERMKKLVSI 174 (723)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 998888888887753
No 71
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.2e-17 Score=185.06 Aligned_cols=403 Identities=14% Similarity=0.120 Sum_probs=195.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHH
Q 001392 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1088)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~ 219 (1088)
..|++++|..+++++ +++.+|..+|.++...|++++|+..|.++ .+ +..+..++.++...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D-~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD-PSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 445555555555555 22345555555555555565555555442 12 22445555555556666666665
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001392 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1088)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 299 (1088)
++.+.+..+ ++.+...++.+|.+.|+ +.++..++. .| +..++..+|..++..|.|+.|..+|..+
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~---l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNR---LAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp --------------------------C---HHHHTTTTT-----CC-----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCC---HHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 555555322 24445555555555555 555444443 13 2346777777777777777777777754
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001392 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1088)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1088)
..|..+|.++..+|+|+.|+..|.++ ..+.+|..++.++...|+++.|..+...+. .+| .-.
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a---d~l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA---DEL 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH---HHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH---hhH
Confidence 46788889999999999999999887 246678888889999999999977776533 444 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 456 (1088)
..++.+|.+.|.+++|+.++++++.+++.+...+..|+.+| .-++..+.++.|...+.+-+-...-..+.+|..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999999999999999999998 334555555555554444331000012567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHH
Q 001392 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1088)
Q Consensus 457 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1088)
+|...++++.|+...-...... | +. ..|..+. ..+.++.+++.....|.
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a-~----------------------~~-~~f~~~~-------~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDA-W----------------------KE-GQFKDII-------TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTT-C----------------------CH-HHHHHHH-------HHCSSTHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhh-h----------------------hh-HHHHHHH-------hchhHHHHHHHHHHHHH
Confidence 9999999999988665443210 0 00 0011100 23557788888887777
Q ss_pred hcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHH
Q 001392 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 616 (1088)
+....++..+..++...-+. .+...++.+.|+..-...++..+.. -++..+--.+-.+|....+++ .+
T Consensus 340 --~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~----~l 407 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQ----AL 407 (449)
T ss_dssp --HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHH----HH
T ss_pred --hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHH----HH
Confidence 44455566666666321121 3445566788888888888866653 345566667788888888884 45
Q ss_pred HHhhhcCCCCChH
Q 001392 617 RAASDATDGKDSY 629 (1088)
Q Consensus 617 ~~al~~~~~~d~~ 629 (1088)
+..+...+.-|..
T Consensus 408 r~si~~~~nfd~~ 420 (449)
T 1b89_A 408 RTSIDAYDNFDNI 420 (449)
T ss_dssp HHHHHHCCCSCHH
T ss_pred HHHHHHhcCcCHH
Confidence 5555555544443
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=4e-17 Score=198.37 Aligned_cols=173 Identities=19% Similarity=0.197 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001392 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1088)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 158 (1088)
.|+...+++.||.+|..+|+.+ +|+.+|+++++++|+++.+|+.+|.+|...|++++|+..|+++++.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~-----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIE-----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567889999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..+|
T Consensus 74 P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 9999999999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
.++...|+ +.+|+..+++++++.|+
T Consensus 153 ~~l~~~g~---~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 153 HCLQIVCD---WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred hHHHhccc---HHHHHHHHHHHHHhChh
Confidence 99999999 99999999999887654
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=1.8e-16 Score=170.42 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=173.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 001392 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN-- 230 (1088)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 230 (1088)
....|.++..++.+|..++..|+|++|+..|++++...|.++ +.+++.+|.|++.+|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345788999999999999999999999999999999999873 5678999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHh--------hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 001392 231 -VEALVALAVMDLQ--------ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (1088)
Q Consensus 231 -~~a~~~la~~~~~--------~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 301 (1088)
+.+++.+|.++.. .|+ +.+|+..|++++..+|+++.+...+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~a~~-------------------------- 138 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD---TRKAIEAFQLFIDRYPNHELVDDATQ-------------------------- 138 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH---HHHHHHHHHHHHHHCTTCTTHHHHHH--------------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchh---HHHHHHHHHHHHHHCcCchhHHHHHH--------------------------
Confidence 6788999999998 777 99999999999999988763321111
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Q 001392 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCET 378 (1088)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~ 378 (1088)
.+. .+. ......++.+|.+|...|++++|+..|++++..+|+ .+.+
T Consensus 139 -----------~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 139 -----------KIR--------------ELR------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp -----------HHH--------------HHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred -----------HHH--------------HHH------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHH
Confidence 000 000 011233788999999999999999999999999998 5679
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-hcCCHHH
Q 001392 379 LKALGHIYVQL----------GQIEKAQELLRKAAKIDPRDA---QAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 379 ~~~la~~~~~~----------g~~~~A~~~~~k~l~~~p~~~---~~~~~la~l~-~~~~~~~ 427 (1088)
++.+|.+|... |++++|+..|++++...|+++ .+...++.++ ..++++.
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 188 LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999977 899999999999999999995 4555566666 5555544
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=184.80 Aligned_cols=248 Identities=16% Similarity=0.123 Sum_probs=195.6
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC--
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 589 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-- 589 (1088)
..|....+++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++.+++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999984 56678899999999999999999999999999883
Q ss_pred ------CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC-----C--CCChHHHHHhhhHHHHHHhhhhhcChhHHHHH
Q 001392 590 ------GKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEATH 656 (1088)
Q Consensus 590 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~--~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~ 656 (1088)
|....++..+|.++...|++++|+..|.+++... + .....++..+|.+ |... |+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------~~ 168 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL-CQNQ------------GK 168 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------TC
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHc------------CC
Confidence 5556789999999999999999999999999863 2 1234567788888 8888 99
Q ss_pred HHHHHHHHHHHHhc--------CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcC----CCCCCchhHHH------
Q 001392 657 LEKAKELYTRVIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWI------ 718 (1088)
Q Consensus 657 ~~~A~~~~~~al~~--------~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~------ 718 (1088)
+++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++...|. ...+.....+.
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 99999999999998 7778889999999999999999999999999987542 11112233333
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 719 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 719 ~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
.++..+...+.+.+|+..+..++.. .+..+.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3444455556677777788887765 4455889999999999999999999999999998875
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=2.6e-16 Score=179.33 Aligned_cols=240 Identities=15% Similarity=0.091 Sum_probs=197.1
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhC---C---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------CH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY---P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-------DA 410 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~-------~~ 410 (1088)
.++.+|..+...|++++|+.+|.+++... + ....++..+|.+|...|+++.|+.++.+++.+.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 46778999999999999999999998763 2 24578999999999999999999999999987432 25
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001392 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (1088)
Q Consensus 411 ~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 488 (1088)
.++..+|.++ ..|++++|+.+|.+++.+.+..+... ...+++++|.+|...|++++|+.+|.+++......
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------- 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------- 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------
Confidence 6788999999 99999999999999999887654322 25688999999999999999999999998732100
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-----cCCcHHHHH
Q 001392 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYL 563 (1088)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 563 (1088)
..|..+.+++++|.++...|++++|+.++++++.. +|.....+.
T Consensus 256 -------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 256 -------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp -------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred -------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23455789999999999999999999999999997 445566777
Q ss_pred HHHHHHHHcCC---hHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 564 RLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 564 ~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|...|++++..
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888888 77888877762 222344557788999999999999999999998764
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=2.9e-16 Score=178.99 Aligned_cols=239 Identities=12% Similarity=0.029 Sum_probs=200.3
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-------
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------- 592 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------- 592 (1088)
..++.+|..+...|++++|+..|.+++...+ ..+.++..+|.++...|++..|+.++.+++.+.+..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 4677889999999999999999999997532 347799999999999999999999999999986542
Q ss_pred hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC-----CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
..++..+|.+|...|++++|+..|.+++...+. ....++..+|.+ |... |++++|+.+|.++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~~a 248 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS-YDRS------------GDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHH
Confidence 336789999999999999999999999985321 123467789999 9888 9999999999999
Q ss_pred Hh-----cCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccC---HHHHHHHHHH
Q 001392 668 IV-----QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQN 739 (1088)
Q Consensus 668 l~-----~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~Ai~~~~~ 739 (1088)
+. .+|..+.++..+|.++...|++++|+.+|++++...+....+.....+..++.++...|+ +.+|+..+++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99 888889999999999999999999999999999997654334455567788888888888 7777777765
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001392 740 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1088)
Q Consensus 740 al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~ 780 (1088)
.-. .+....++..+|.+|...|++++|..+|+++++..
T Consensus 329 ~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 329 KNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 211 11225677899999999999999999999998754
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=179.06 Aligned_cols=252 Identities=19% Similarity=0.122 Sum_probs=170.4
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----
Q 001392 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----- 405 (1088)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~----- 405 (1088)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|.+++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 444455555666666666666666666665553 3444566666777777777777777777776655
Q ss_pred ---CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 406 ---DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA--GE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 406 ---~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
.|....++..+|.++ ..|++++|+.+|.+++...... +. +....++..+|.++...|++++|+.+|++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 244466777777777 7777777777777777765432 11 1125778899999999999999999999998741
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC-
Q 001392 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD- 557 (1088)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~- 557 (1088)
... .....|....+++.+|.++...|++++|+.+|++++...|.
T Consensus 184 ~~~-----------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 184 QTK-----------------------------------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp HHT-----------------------------------SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----------------------------------hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 100 00024567789999999999999999999999999976433
Q ss_pred --------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 558 --------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 558 --------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
....+..++..+...+.+.+|..++..+....|..+.++..+|.+|...|++++|...|++++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 233444455556667788888999999999999999999999999999999999999999998875
Q ss_pred CC
Q 001392 624 DG 625 (1088)
Q Consensus 624 ~~ 625 (1088)
+.
T Consensus 309 ~~ 310 (311)
T 3nf1_A 309 KQ 310 (311)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.72 E-value=3.8e-15 Score=160.78 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=182.8
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVE----FNR---GRYSDSL 182 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~----~~~---g~~~~Al 182 (1088)
+|+.++.+++.++|.+..+|..++.++...| .+++++.++..++..+|.+..+|..++.++ ... +++.+++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 8999999999999999999999999999999 999999999999999999999999999999 777 8999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch---HHhHHHHHHHH
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG--KARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM 257 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~---~~~~~~Al~~~ 257 (1088)
.++.+++..+|.+ ..+|...+.++..+|.++ +++.++.++++.+|.|..+|...+.+....+. ...+.+++.++
T Consensus 131 ~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 131 DILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 9999999999999 788999999999999999 99999999999999999999999999887754 23488999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 258 QRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+++..+|.+..+|+.++.++...|.... +..++.+++......+..+.++..++.++...|+.++|+.+|..+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999888888777433 4445555443221223344455555555554455555555544444
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=6.5e-18 Score=187.21 Aligned_cols=329 Identities=12% Similarity=0.082 Sum_probs=156.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
+....|++++|..+++++ +.+.+|..+|.++...|++++|+..|.++ .++..+..++..+ ..|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 344667788888888887 33468888888888888888888888763 4566778888888 888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001392 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
.+++.+++..+. +.+...++.+|.+.|++.++..+++
T Consensus 82 ~yl~~ark~~~~------~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------------- 118 (449)
T 1b89_A 82 KYLQMARKKARE------SYVETELIFALAKTNRLAELEEFIN------------------------------------- 118 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------------------------------------
T ss_pred HHHHHHHHhCcc------chhHHHHHHHHHHhCCHHHHHHHHc-------------------------------------
Confidence 888877764222 4667778888888888888765552
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
.| +...+..+|..+...|++++|..+|..+ ..|..++.++..+|++++|++.+.++
T Consensus 119 -----------~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA---- 174 (449)
T 1b89_A 119 -----------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA---- 174 (449)
T ss_dssp -----------CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred -----------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence 12 3348888999999999999999999875 46888999999999999999999888
Q ss_pred CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHh
Q 001392 590 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669 (1088)
Q Consensus 590 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 669 (1088)
.++.+|..++.++...|+|..|..+...++ ..|. -+..+.++ |... |++++|+.++++++.
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad----~l~~lv~~-Yek~------------G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHAD----ELEELINY-YQDR------------GYFEELITMLEAALG 235 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHH----HHHHHHHH-HHHT------------TCHHHHHHHHHHHTT
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHh----hHHHHHHH-HHHC------------CCHHHHHHHHHHHhC
Confidence 468888888889999999999977666533 3332 23356677 7777 899999999999999
Q ss_pred cCCCCHHHHhhHHHHHHhc--CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH----
Q 001392 670 QHTSNLYAANGAGVVLAEK--GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---- 743 (1088)
Q Consensus 670 ~~p~~~~a~~~la~~l~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~---- 743 (1088)
+++....++..+|.+|++- +++.++++.|...+...|--.....+..|..+..+|...++|+.|+...-.....
T Consensus 236 le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~ 315 (449)
T 1b89_A 236 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 315 (449)
T ss_dssp STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhh
Confidence 9998999999999988864 5777777777654443320000035778899999999999999998753222100
Q ss_pred ------hcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001392 744 ------FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1088)
Q Consensus 744 ------~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al 777 (1088)
-....++.+++.....|. +....++..+..++
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 002455777777666666 55666777777777
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.69 E-value=5.1e-15 Score=168.30 Aligned_cols=279 Identities=14% Similarity=0.062 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----hH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GA 198 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~ 198 (1088)
.+++.+|.+++..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...|... ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456678888888888888888888888776542 2567778888888888888888888887655431 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
++..+|.++...|++++|+..|++++.+. |....++..+|.++...|+ +++|...+.+++...|...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-- 169 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ-- 169 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhccC--
Confidence 35667888888888888888888887764 2233445566666666666 6667777766666654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch--hhH--h
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FPY--Y 346 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~--~ 346 (1088)
.+....++..+|.++...|++++|..++.+++.......... ... .
T Consensus 170 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 170 ------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp ------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 011223445555555555555555555555554322111110 111 1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAFIDL 416 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~------~~~~~~~l 416 (1088)
.++.++...|++++|..++.+++...|.. ...+..++.++...|++++|...+.+++...+. ...++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 23344555566666666666555544321 224455666666666666666666666554321 12355566
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHHHHhc
Q 001392 417 GELL-ISSDTGAALDAFKTARTLLKKA 442 (1088)
Q Consensus 417 a~l~-~~~~~~~A~~~~~~a~~~~~~~ 442 (1088)
+.++ ..|++++|...+.+++...+..
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhccc
Confidence 6666 6677777777777777666543
No 81
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=3.7e-15 Score=160.87 Aligned_cols=243 Identities=10% Similarity=-0.029 Sum_probs=196.7
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChhHHHHHHHHHH----HHc-
Q 001392 139 LAKGEV-EQASSAFKIVLEADRDNVPALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCPGAIRLGIGLCR----YKL- 210 (1088)
Q Consensus 139 ~~~g~~-~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~----~~~- 210 (1088)
...|.+ ++|+.++..++..+|.+..+|..++.++...| .+++++.++..++..+|.+ ..+|...+.++ ..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhcc
Confidence 344444 68999999999999999999999999999999 9999999999999999999 67788888888 777
Q ss_pred --CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 211 --GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 211 --g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~--~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+++++++.++.+++..+|.+..+|...+.+....+. +. +++..+.+++..+|.+..+|.+.+.++...+...
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~---~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~- 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL---HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA- 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-
Confidence 789999999999999999999999999999988887 77 8999999999999999988887777665544300
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH-HHHHH
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNF 365 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 365 (1088)
....+++++.++.+++. ..|.+..+|+.++.++...|+... ...++
T Consensus 198 ------------------------------~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 198 ------------------------------TDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ------------------------------hhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 00115677777777776 567777777777777777776444 44466
Q ss_pred HHHHHhC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 001392 366 EKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGEL 419 (1088)
Q Consensus 366 ~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~-~~p~~~~~~~~la~l 419 (1088)
.+++... |.++.++..++.+|.+.|+.++|+.+|+.+.. .+|.....|...+..
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 6666554 77888888888888888888888888888886 688888887766553
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.69 E-value=7.1e-15 Score=167.10 Aligned_cols=290 Identities=15% Similarity=0.073 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG----AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
.++..+|.+++..|++++|+..+++++...|.... .++..+|.++...|+++.|...+.+++.+.|.....+.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 91 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--- 91 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH---
Confidence 45677788888889999999999998888776532 24667788888888888888888888876543211100
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---C--CCCchHHHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---H--GPTKSHSYYNLAR 313 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~--~~~~~~~~~~la~ 313 (1088)
...++..++.++...|++..|+..+..++.... . .+....++..+|.
T Consensus 92 ----------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 143 (373)
T 1hz4_A 92 ----------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143 (373)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 011233344444444445554444444443221 1 1344567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCC--CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-HHHH----HHHHH
Q 001392 314 SYHSKGDYEKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD--N-CETL----KALGH 384 (1088)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-~~~~----~~la~ 384 (1088)
++...|++++|..++.+++...+. ++....++..+|.++...|++++|..++++++...+. . .... ..++.
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 999999999999999999875542 2235567889999999999999999999999876322 2 2211 13456
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIH 458 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~~----~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~ 458 (1088)
++...|++++|..++.+++...|.. ...+..++.++ ..|++++|...+++++...+..+.... ..++..+|.++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 6889999999999999998876643 34567889999 999999999999999998876543222 35889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhh
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTL 483 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~ 483 (1088)
...|++++|...|.+++........
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCCHHHHHHHHHHHHHHhccccH
Confidence 9999999999999999987654443
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=1.1e-16 Score=155.39 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.+++++|+..|.+++..+|.++..++.+|.+|+..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 56677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA-FQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
+++.++|++ +.+++.+|.++..+|++++|... ++++++++|+++.++..++.++...|+
T Consensus 90 ~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999998 77899999999999999877665 589999999999999888888877664
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=8.1e-17 Score=156.37 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=133.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
+|.++...|++++|+..|..++..+|.++.+++.+|.+|+..|+|++|+..|++++.++|++ +.+++.+|.++..+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCch
Confidence 67888889999999999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
++|+..|+++++++|+++.+++.+|.++...|+ +.+|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 8777765 589999999999999988888877774
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.67 E-value=1.3e-15 Score=166.55 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=176.1
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK--G-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~--g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1088)
+|..++.++-+.-+.....+ .++.. + ++++|+.+|.++ |.++...|+|++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655433222 22332 2 499999999887 56788899999999999999
Q ss_pred HHhCCC-----ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhh-chHHhHHHHHHH
Q 001392 189 LQVHPS-----CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQA-NEAAGIRKGMEK 256 (1088)
Q Consensus 189 l~~~p~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~-~~~~~~~~Al~~ 256 (1088)
+.+.+. ....++..+|.+|..+|++++|+..|++++.+.|.. ..++..+|.++... |+ +++|+.+
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~---~~~A~~~ 140 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD---YAKAIDC 140 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC---HHHHHHH
Confidence 987532 225678899999999999999999999999886642 34566666666664 66 6777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1088)
|++++.+.|... .......++..+|.++...|++++|+.+|.+++...+
T Consensus 141 ~~~Al~~~~~~~-------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 141 YELAGEWYAQDQ-------------------------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHTT-------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-------------------------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 777666654221 0011135677888888888999999999988887443
Q ss_pred CCCCc----hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--hcCCHHHHHHHHHHHHHh
Q 001392 337 KPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-----TLKALGHIYV--QLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 337 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~k~l~~ 405 (1088)
..+.. ..+++.+|.++...|++++|+.+|++++.++|.... .+..++..+. ..+++.+|+..|.+++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 32221 125678889999999999999999999888887654 3444555554 456799999999888888
Q ss_pred CCCCHHHHHHHHHHH
Q 001392 406 DPRDAQAFIDLGELL 420 (1088)
Q Consensus 406 ~p~~~~~~~~la~l~ 420 (1088)
+|.....+..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 887666655554443
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=3.9e-15 Score=149.86 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
...++..+|.+|...|... +|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++...|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----------QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----------HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4456667777777766655 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
+.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++...|.++.++..+|.++
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 8888888888888888888888888888888887 667888888888888888888888888888888888888888888
Q ss_pred HhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
...|+ +++|+..+.+++..+|.+.
T Consensus 155 ~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred HHcCC---HHHHHHHHHHHHHcCCCch
Confidence 88888 8888888888888777654
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=2.1e-15 Score=155.66 Aligned_cols=166 Identities=17% Similarity=0.105 Sum_probs=116.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------------QACVEFNRGRYSDSLEFYKRALQ 190 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------la~~~~~~g~~~~Al~~~~~al~ 190 (1088)
++..++..|..++..|++++|+..|.+++..+|+++.+++. +|.++...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999988 78888888888888888888888
Q ss_pred hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 191 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
.+|++ +.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++...+. .....+...+.+++...| ...+
T Consensus 83 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~a 159 (208)
T 3urz_A 83 KAPNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSPTK-MQYA 159 (208)
T ss_dssp HCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCH-HHHH
T ss_pred HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCc-hhHH
Confidence 88877 66777788888888888888888888888888888888888877766553 113445555555442221 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
++.+|..+...|++++|+..|++++
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=1.2e-15 Score=187.11 Aligned_cols=191 Identities=12% Similarity=-0.005 Sum_probs=169.4
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL--------EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+|.++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.+++..|++++|+..|++++..+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56888888888777 78899999999999999 88999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
++ ..+++.+|.++..+|++++|+..|+++++++|++..+++.+|.++...|+ +++ +..|+++++++|.++.+++.
T Consensus 465 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~---~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN---TDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---CCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHH-HHHHHHHHHhCCchHHHHHH
Confidence 99 78899999999999999999999999999999999999999999999999 999 99999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
+|.++...|++++|+..|++++.. .|....+++.+|.++...+..++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPT---SRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTT---STTHHHHHHHHHHHTC-------
T ss_pred HHHHHHHcCCHHHHHHHHHhhccc---CcccHHHHHHHHHHHHccCCCCC
Confidence 999999999999999998888754 46777888888888877665333
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=5.8e-15 Score=154.44 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=136.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~ 201 (1088)
.+..++.+|..++..|+|++|+..|++++...|.++ .+++.+|.+++..|+|++|+..|++++..+|+++. .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456788899999999999999999999999888764 68899999999999999999999999999998732 3678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.++..+|.. ....+..++.++...|+ +++|+..|++++..+|+++.+...+..+
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRGYPNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHH---HHHHHHHHHHHHTTCTTCTTHHHHHHHH----
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHH---HHHHHHHHHHHHHHCcCChhHHHHHHHH----
Confidence 888888776532 11223445555556666 8888888888888888876544222111
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
+.+.. . .....+.+|.+|...|++.+|
T Consensus 140 ------------------------------~~~~~--------------~---------~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 140 ------------------------------VFLKD--------------R---------LAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp ------------------------------HHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------------------HHHHH--------------H---------HHHHHHHHHHHHHHcCcHHHH
Confidence 10000 0 001123456666666666666
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 362 LTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 362 ~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
+..|+++++.+|+++ .++..+|.+|..+|++++|+..++++....|++
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 666666666666654 456666666666666666666666666665554
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.65 E-value=3e-15 Score=163.54 Aligned_cols=233 Identities=17% Similarity=0.102 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
++++|+..|.++ +.++ ..|++++|+..|.+++.+.+..+.... +.++.++|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366666666665 3455 677888888888888777665443222 578889999999999999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc-CCHHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (1088)
.+|++++...+... .......++.++|.+|... |++++|+.+
T Consensus 98 ~~~~~Al~l~~~~g-------------------------------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 98 DSLENAIQIFTHRG-------------------------------------QFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------------------------------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99999988532100 1112356889999999996 999999999
Q ss_pred HHHHHHHcCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-------HHHhhhhhhhcccchHHHHH
Q 001392 548 YRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 548 ~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~ 614 (1088)
|++++...|.. ..++..+|.++...|++++|+.+|++++.+.|.+.. ++..+|.++...|++.+|+.
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988753 568999999999999999999999999999988764 56889999999999999999
Q ss_pred HHHHhhhcCCCCChH----HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Q 001392 615 TFRAASDATDGKDSY----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 685 (1088)
Q Consensus 615 ~~~~al~~~~~~d~~----a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l 685 (1088)
.|++++.+.|..... .+..++.. |... . .+++.+|+..|++++.++|.+...+..+-..+
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~-~~~~--~--------~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDA-VNEG--D--------SEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHH-HHTT--C--------TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHH-HHcC--C--------HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999988763221 22233333 3211 0 16799999999999999998766666554444
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=8.3e-15 Score=147.47 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=145.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...++.+|.+++..|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999988 67788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
...|++++|...|.+++..+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999998888 89999999999998888887777777777777777777
Q ss_pred HHHHHHHHhhc
Q 001392 288 EQLTETALAVT 298 (1088)
Q Consensus 288 ~~~~~~~l~~~ 298 (1088)
...+..++...
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 77777766544
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.64 E-value=2.1e-15 Score=141.28 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=112.0
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
++..++|..+..+..+|..++..|+|++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++.++|++ ..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999999999999888765
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.64 E-value=5.9e-15 Score=154.38 Aligned_cols=210 Identities=11% Similarity=0.114 Sum_probs=165.1
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh---HHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 597 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~ 597 (1088)
.+..++.+|..+...|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45788999999999999999999999999998875 478999999999999999999999999999999876 788
Q ss_pred hhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 001392 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1088)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 677 (1088)
.+|.++...+.. .+. .+..++.. +... |++++|+..|++++..+|+++.+
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~-~~~~------------~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRS-DRDP------------QQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CC------------HHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchh-hcCc------------HHHHHHHHHHHHHHHHCcCChhH
Confidence 889888776532 111 12234444 4444 99999999999999999998876
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~L 756 (1088)
...+..+. .+.. ......+.+|.+|+..|++.+|+..|+++++.+|.++. +.+++.+
T Consensus 133 ~~a~~~l~--------------~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 TDATKRLV--------------FLKD--------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp HHHHHHHH--------------HHHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHH--------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 64332211 1111 12345578899999999999999999999999765443 5789999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
|.+|...|++++|+..++++....|++..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999999997654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=2.7e-15 Score=183.79 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHh--------hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 001392 107 EEHFILATQYYNKAS--------RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 178 (1088)
.+++++|+..|++++ ..+|.++.+++.+|.+++..|++++|+..|++++..+|++..+++.+|.+++..|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 456789999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHH
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1088)
++|+..|++++.++|++ ..+++.+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+ +++|+..|+
T Consensus 484 ~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~ 558 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD---RVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999 7789999999999999999 999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 259 RAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
++++++|.+..++..++.+++..+.
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999988666
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=1.5e-14 Score=149.17 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
+..+...|..++..|++++|+..|.+++... |.++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------p~~~~~ 40 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------------------------------------------IDRTEM 40 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------------CCChHH
Confidence 5677888999999999999999999999843 334444
Q ss_pred HHh----------------HHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 001392 528 LFN----------------LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (1088)
Q Consensus 528 ~~~----------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 591 (1088)
++. +|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|++++.++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 41 YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 444 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhhhhhcccc--hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHh
Q 001392 592 YPNALSMLGDLELKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669 (1088)
Q Consensus 592 ~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 669 (1088)
++.+++.+|.+|...|+ ...+...|.+++. +.+..++++.+|.+ +... |++++|+..|+++++
T Consensus 121 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~-~~~~------------~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLS-KLFT------------TRYEKARNSLQKVIL 185 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHH-HHHH------------HTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHH-HHHc------------cCHHHHHHHHHHHHH
Confidence 99999999999987765 4566777777654 33345667777877 7777 999999999999999
Q ss_pred cCCCCHHHHhhHHH
Q 001392 670 QHTSNLYAANGAGV 683 (1088)
Q Consensus 670 ~~p~~~~a~~~la~ 683 (1088)
++|++ .+...+..
T Consensus 186 l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 186 RFPST-EAQKTLDK 198 (208)
T ss_dssp TSCCH-HHHHHHHH
T ss_pred hCCCH-HHHHHHHH
Confidence 99974 33333433
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.61 E-value=3e-13 Score=146.44 Aligned_cols=245 Identities=13% Similarity=0.049 Sum_probs=193.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YS 179 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~ 179 (1088)
+|+.++.+++.++|.+..+|..++.++...|. +++++.++..++..+|.+..+|..++.++...+. +.
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 79999999999999999999999999988776 7899999999999999999999999999999994 89
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-----------H
Q 001392 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------A 247 (1088)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------~ 247 (1088)
+++.++.+++..+|.+ ..+|...+.++...|. +++++.++.+++..+|.|..+|..++.+...... .
T Consensus 128 ~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 206 (331)
T 3dss_A 128 RELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 206 (331)
T ss_dssp HHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence 9999999999999999 7889999999999998 6999999999999999999999999988877621 1
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001392 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1088)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1088)
+.+.+++.++.+++..+|++..+|+++..++...- |
T Consensus 207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~------------------------------------~-------- 242 (331)
T 3dss_A 207 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGS------------------------------------G-------- 242 (331)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSS------------------------------------C--------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc------------------------------------C--------
Confidence 34899999999999999999988876655443220 0
Q ss_pred HHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 001392 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQIEKAQELLRKAAK 404 (1088)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~k~l~ 404 (1088)
.+.. + -...+.+++++.++.++++..|++...+..++.+.. ..+..++...++.++++
T Consensus 243 ----------~~~~-------~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 243 ----------RCEL-------S--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp ----------GGGC-------C--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ----------cccc-------c--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 0000 0 111233566666777777777766544444333322 24566777777777777
Q ss_pred hCCCCHHHHHHHHHHH
Q 001392 405 IDPRDAQAFIDLGELL 420 (1088)
Q Consensus 405 ~~p~~~~~~~~la~l~ 420 (1088)
++|.....|..+..-+
T Consensus 304 ~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 304 VDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HCGGGHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHH
Confidence 7777777776665544
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.61 E-value=6.6e-15 Score=159.57 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Q 001392 107 EEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGR 177 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~ 177 (1088)
...|.+|+..+.++...+ |..+.++..+|.+++..|++++|+.+|.+++.. .|..+.++..+|.++...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 455667777777766544 667889999999999999999999999999977 35567789999999999999
Q ss_pred hHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHH
Q 001392 178 YSDSLEFYKRALQVH--------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------DPENVEALVALAVMD 241 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~--------p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~ 241 (1088)
+++|+.+|.+++... |.. ..++..+|.++..+|++++|+..|++++.+ .|....++..+|.++
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999872 333 667889999999999999999999999988 666677888899999
Q ss_pred HhhchHHhHHHHHHHHHHHHHh
Q 001392 242 LQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
...|+ +++|+..|.+++..
T Consensus 180 ~~~g~---~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 180 LKQGK---YQDAETLYKEILTR 198 (283)
T ss_dssp HHHTC---HHHHHHHHHHHHHH
T ss_pred HHcCC---HHHHHHHHHHHHHH
Confidence 88888 88899999888876
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.59 E-value=3.3e-13 Score=146.10 Aligned_cols=250 Identities=12% Similarity=0.031 Sum_probs=195.1
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 139 LAKGEVE-QASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 139 ~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...|.+. +|+.++..++..+|.+..+|..++.++...+. +.+++.++..++..+|.+ ..+|...+.++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-y~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 3556654 89999999999999999999999999988776 789999999999999999 77899999999
Q ss_pred HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 208 YKLGQ--LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 208 ~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
..+|. +++++.++.++++.+|.|..+|...+.+....|. .+++++.++.+++..+|.+..+|+..+.++...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 99994 8999999999999999999999999999888775 1488999999999999999988888777654432210
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
.+ + .... ...+.+++++.++
T Consensus 197 ~~--------------~----------------------------------~~~~------------~~~~~~~eEle~~ 216 (331)
T 3dss_A 197 DS--------------G----------------------------------PQGR------------LPENVLLKELELV 216 (331)
T ss_dssp ------------------------------------------------------C------------CCHHHHHHHHHHH
T ss_pred cc--------------c----------------------------------cccc------------cchHHHHHHHHHH
Confidence 00 0 0000 0012356777888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----hcCCHHHHHH
Q 001392 366 EKVLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALD 430 (1088)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~----~~~~~~~A~~ 430 (1088)
.+++..+|++..+|+.+..++... +.+++++..+.+++++.|++...+..++.+. ..+..++...
T Consensus 217 ~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 217 QNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHH
Confidence 888888888888877665555544 4589999999999999999976666665543 3577889999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGV 456 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~ 456 (1088)
++.+++++.|.. ..-|..++.
T Consensus 297 ~l~~l~~~Dp~r-----~~~y~d~~~ 317 (331)
T 3dss_A 297 YFSTLKAVDPMR-----AAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHCGGG-----HHHHHHHHH
T ss_pred HHHHHHHhCcch-----hhHHHHHHH
Confidence 999999987653 444444443
No 99
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.59 E-value=4.9e-13 Score=145.27 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=160.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNR-G-RYSDSLEFYKRA 188 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g-~~~~Al~~~~~a 188 (1088)
+|+.++++++.++|.+..+|..++.++...| .+++++.++..++..+|.+..+|..++.++... + ++.+++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 7999999999999999999999999999999 599999999999999999999999999999998 8 999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch----HHhHHHHHHH
Q 001392 189 LQVHPSCPGAIRLGIGLCRYKLGQLG--------KARQAFQRALQLDPENVEALVALAVMDLQANE----AAGIRKGMEK 256 (1088)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----~~~~~~Al~~ 256 (1088)
+..+|.+ ..+|...+.++..+|.++ +++.++.++++.+|.|..+|...+.+....+. ...+.+++.+
T Consensus 152 L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 152 LLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp TSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 9999999 788999999999998888 99999999999999999999999999888764 2347899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
+.+++..+|.+..+|+.+..++...|..
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998888777653
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=2.4e-14 Score=155.14 Aligned_cols=212 Identities=18% Similarity=0.214 Sum_probs=153.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---- 335 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 335 (1088)
|..+.++..+|.+++..|++++|+.++.+++... ...+....++..+|.++...|++++|+.+|.+++...
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4445566666666666666666666666666543 3445666788888889999999999999988888643
Q ss_pred -CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Q 001392 336 -NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI- 405 (1088)
Q Consensus 336 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~- 405 (1088)
+..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|.+++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234667788899999999999999999999999988 6667788999999999999999999999999876
Q ss_pred --------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 406 --------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1088)
Q Consensus 406 --------~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a 474 (1088)
.+.....+..++..+ ..+.... ...+..+........... ...++..+|.++...|++++|+.+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRD-SAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666777777776 3333332 233444444433332221 2578899999999999999999999999
Q ss_pred Hhc
Q 001392 475 LGD 477 (1088)
Q Consensus 475 l~~ 477 (1088)
+..
T Consensus 279 l~~ 281 (283)
T 3edt_B 279 SRN 281 (283)
T ss_dssp HTT
T ss_pred HHh
Confidence 873
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=1.3e-14 Score=135.69 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=114.5
Q ss_pred HHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
++..++|....++..+|..+...|++++|+..|+++++..| .++.+|+++|.+|..+|++.+|+..|+++++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 45568999999999999999999999999999999999998 78999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHH
Q 001392 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (1088)
Q Consensus 746 ~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~ 794 (1088)
++.++.+++.+|.+|...|++++|+..|+++++++|+++.++.+++.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 7788999999999999999999999999999999999999999998874
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=9.9e-15 Score=140.72 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.+-..|.+++.++|+++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|+|++|+..|++++.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
+|++ +.+++.+|.||..+|++++|+..|++++.+.|+..
T Consensus 100 ~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999 77899999999999999999999999999999765
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.57 E-value=1.7e-14 Score=144.38 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=132.3
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.....++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| + +.++..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHH
Confidence 4555677889999999999999999999999999999999999999999999999999999999999999 6 4444444
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh
Q 001392 204 GLCR-YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFF 280 (1088)
Q Consensus 204 g~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~ 280 (1088)
+.+. ...+....|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|.. +.++..++.++..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 5442 233344457888888888888888888888888888888 888888888888888764 4467777777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 001392 281 TGQHFLVEQLTETALA 296 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~ 296 (1088)
.|++++|...|.+++.
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 7777777766666553
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.56 E-value=1.1e-14 Score=145.85 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=126.8
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhh
Q 001392 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1088)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg 635 (1088)
|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...| +......++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHH
Confidence 334455667777777777777777777777777777777777777777777777777777777777666 333333333
Q ss_pred hHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchh
Q 001392 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1088)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1088)
.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|+. ..+.
T Consensus 81 ~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 145 (176)
T 2r5s_A 81 KLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGE 145 (176)
T ss_dssp HHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTH
T ss_pred HHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHH
Confidence 3311111 223347888999999999999999999999999999999999999999888732 2356
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
++.++|.++..+|++++|+..|++++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 8999999999999999999999988764
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.56 E-value=6.1e-13 Score=144.52 Aligned_cols=249 Identities=11% Similarity=-0.058 Sum_probs=206.4
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
..+....++..+..+....+..++|+.++.+++..+|++..+|+..+.++...| .+++++.++..++..+|.+..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344455666666677777777889999999999999999999999999999999 5999999999999999999999999
Q ss_pred hhhhhhcc-c-chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHH--------HHHHHHHHHH
Q 001392 599 LGDLELKN-D-DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--------KAKELYTRVI 668 (1088)
Q Consensus 599 l~~~~~~~-g-~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al 668 (1088)
.++++... + ++.+++..+.+++...|. +..++...+.+ +... +.++ ++++++.+++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv-l~~l------------~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL-YSHF------------STLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH-HHHH------------HHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------ccccccchhhHHHHHHHHHHHH
Confidence 99999988 7 899999999999999887 77788888777 6665 5555 9999999999
Q ss_pred hcCCCCHHHHhhHHHHHHhcCC-------chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHH----------
Q 001392 669 VQHTSNLYAANGAGVVLAEKGQ-------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA---------- 731 (1088)
Q Consensus 669 ~~~p~~~~a~~~la~~l~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~---------- 731 (1088)
..+|.|..+|+..+.++...+. ++++++++.+++...| .+..+|+.+..++...|...
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-----HNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999887 6899999999999998 88999999999998877640
Q ss_pred ------HHH-HHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCChhHH
Q 001392 732 ------LAM-KMYQNCLRKFYY-------NTDAQILLYLARTHYEAEQWQDCKKSLLRAI-HLAPSNYTLR 787 (1088)
Q Consensus 732 ------~Ai-~~~~~al~~~~~-------~~~~~~l~~La~~~~~~g~~~~A~~~l~~al-~~~p~~~~~~ 787 (1088)
... ..-+.|+..... ...+.++..|+.+|...|+..+|.++|+.+. +.+|-....+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 011 222223322222 3558899999999999999999999999987 5677654443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.55 E-value=8.7e-14 Score=151.29 Aligned_cols=169 Identities=11% Similarity=-0.031 Sum_probs=154.8
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
-|.++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+. ....+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHH
Confidence 388899999999999999999999999999999999999999999999999999999999999999999965 6667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFFT 281 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~ 281 (1088)
+..+...++...|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|++ ..++..++.++...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 8888999999999999999999999999999999999999999 999999999999999988 77888888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 001392 282 GQHFLVEQLTETALA 296 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~ 296 (1088)
|+.+.|...+.+++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 888877777777663
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=9.7e-14 Score=167.28 Aligned_cols=165 Identities=17% Similarity=0.125 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.+++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---chHHhHHHHHHHHHHHHHh
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---~~~~~~~~Al~~~~~al~~ 263 (1088)
+++..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++... |+ +++|+..|++++..
T Consensus 82 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhc
Confidence 999999999 778999999999999999999999999999999999999999999999 76 99999999999999
Q ss_pred CCCCHHHHHHHH
Q 001392 264 YPYCAMALNYLA 275 (1088)
Q Consensus 264 ~p~~~~~~~~la 275 (1088)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999877666554
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=6.5e-14 Score=135.28 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=114.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
+-..|.+++.++|.++.+++.+|.+++..|++++|+..|.+++..+|.++.+|+.+|.++...|+|++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
|++ +.+++.+|.++..+|++++|+..|++++.++|+++...
T Consensus 86 p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999 77899999999999999999999999999999877553
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.51 E-value=3.9e-13 Score=146.17 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=155.0
Q ss_pred HHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH
Q 001392 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (1088)
Q Consensus 553 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~ 632 (1088)
...|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|. ..+..+
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~ 189 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGL 189 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999999999999999998884 444444
Q ss_pred HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 001392 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (1088)
Q Consensus 633 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (1088)
..+.. +... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|+. .
T Consensus 190 ~~~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~ 253 (287)
T 3qou_A 190 VAQIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---A 253 (287)
T ss_dssp HHHHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---G
T ss_pred HHHHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---c
Confidence 44444 5555 778889999999999999999999999999999999999999999999999832 2
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
.+.++.+++.+|...|+.++|+..|++++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3889999999999999999999999998864
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.50 E-value=5e-14 Score=135.80 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai 734 (1088)
+++..+-..|++++.++|+++.+++.+|.++...|++++|+.+|++++...| .++.+|+++|.+|..+|++++|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHH
Confidence 5555666778899999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 735 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 735 ~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
..|++++.. .|.++.+++.+|.+|...|++++|+.+|++++.+.|+++
T Consensus 91 ~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999 677889999999999999999999999999999999875
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.49 E-value=8.4e-15 Score=163.14 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHH----HhhcCCCChhhHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 108 EHFILATQYYNK----ASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1088)
Q Consensus 108 ~~~~~A~~~~~~----a~~~~p~~~~~~~~~g~~~~------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1088)
+.++.|+..+.. ++.++|.. +|..+|.... ..+++++|+..|..++..+|.++.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 457789999998 88888876 4444444432 45678889999999998899999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCh--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 172 EFNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
++..|+|++|+..|++++.+.|.+. ..+++.+|.|+..+|++++|+..|.+++.++|+++.+++.+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 236 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR 236 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999984 47899999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV-EQLTETAL 295 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l 295 (1088)
|.++...|+ +++|+..|++++.++|.+..++..++.++...|++.++ ...+..++
T Consensus 237 g~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 237 GEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999988888887 44555554
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.48 E-value=1.9e-13 Score=131.10 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=113.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
-..|.+++..+|.++..++.+|..++..|++++|+..|.+++..+|+++.+|+.+|.++...|+|++|+..|++++.++|
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
++ +.+++.+|.|+..+|++++|+..|++++.++|+++........+
T Consensus 84 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 84 NE-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99 77899999999999999999999999999999887665444433
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.48 E-value=3.7e-13 Score=148.04 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=98.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001392 421 ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1088)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1088)
..|++++|+..|.+++.+.+..+.... ..++.++|.+|...|++++|+.+|++++......
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------------ 109 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------------------ 109 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------------------
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------
Confidence 555555555555555555544322111 3456666666666667777777666666531100
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcC
Q 001392 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARN 573 (1088)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g 573 (1088)
........++.++|.+|.. |++++|+.+|++++...|.. ..++..+|.++...|
T Consensus 110 -------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 110 -------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 0011134566666777766 77777777777776655432 456666777777777
Q ss_pred ChHHHHHHHHHHHHHCCCCh------hHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 574 NLQLSIELVNEALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 574 ~~~~A~~~l~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
++++|+.+|++++.+.|.+. .++..+|.++...|++.+|+..|++++ ..|.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 77777777777776654432 255566666677777777777777777 5554
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.46 E-value=2e-12 Score=142.15 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA-KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.+++.+|..++.++.+..+.. ++. .|+++.|..+|.++ |.++...|+|++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 567889999999998876642 122 58999999999876 56788899999999999
Q ss_pred HHHHHhCCCC-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhhchHHhHHHHH
Q 001392 186 KRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--N----VEALVALAVMDLQANEAAGIRKGM 254 (1088)
Q Consensus 186 ~~al~~~p~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~~~~~~~~~Al 254 (1088)
.+++.+.+.. ...++..+|.+|..+|++++|+..|++++.+.+. + ..++..+|.++.. |+ +++|+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~---~~~A~ 135 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD---LSKAV 135 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC---HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC---HHHHH
Confidence 9999886532 2456788999999999999999999999987432 1 3456677777766 66 77777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1088)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1088)
.+|++++.+.|... + ......++..+|.+|...|++++|+.+|.+++..
T Consensus 136 ~~~~~Al~~~~~~~--------------~-----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 136 HLYQQAAAVFENEE--------------R-----------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT--------------C-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--------------C-----------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777776654220 0 0112356778888888888888888888888874
Q ss_pred cCCCCC---chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHhcCCHHHHHH
Q 001392 335 INKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQE 397 (1088)
Q Consensus 335 ~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 397 (1088)
.+..+. ...+++.+|.++...|++++|+.+|++++ .+|... ..+..++..+ ..++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 432221 23467888888888899999999999998 888643 2344555554 5667655544
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.45 E-value=3.6e-13 Score=141.44 Aligned_cols=211 Identities=13% Similarity=0.055 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCCh-------
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-------ACVEFNRGRYSDSLEFYKRALQVHPSCP------- 196 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~g~~~~Al~~~~~al~~~p~~~------- 196 (1088)
++..|.-+ ..+++..|...|.+++..+|..+.+|+++ +.++...+++.+++..+++.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 44455554 57999999999999999999999999999 7899999999999999999998776541
Q ss_pred -------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh
Q 001392 197 -------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 197 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
..+++.++.++...|++++|...|..++...|.+. +.+.+|.+++..++ +.+|+..|..+...
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r---~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER---WTDVIDQVKSAGKW 164 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC---HHHHHHHHTTGGGC
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC---HHHHHHHHHHhhcc
Confidence 23344566667777777777777776666666555 66666666666655 55565555533322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-ch
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FI 342 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 342 (1088)
. ++ .....+++.+|.++...|++++|+..|.+++.. +..|. ..
T Consensus 165 ~--d~---------------------------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~ 208 (282)
T 4f3v_A 165 P--DK---------------------------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACAR 208 (282)
T ss_dssp S--CH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHH
T ss_pred C--Cc---------------------------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccH
Confidence 1 00 001247788888888888888888888888741 11133 55
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001392 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1088)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1088)
.+++.+|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 67788888888888888888888888888887 66655553
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.44 E-value=4.8e-12 Score=119.28 Aligned_cols=134 Identities=25% Similarity=0.493 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
.+|+.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.. ..+++.+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHH
Confidence 4677888889999999999999999998888888888889999999999999999999999888887 667888899999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
..|++++|+..|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 99999999999999998888888888888888888888 88888888888888775
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=2.7e-12 Score=132.52 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc----chHHHHHHHH
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKAKETFR 617 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 617 (1088)
.+|+.+|+++... .++.+++.+|.++...+++++|+.+|+++... .++.+++.+|.+|.. + ++.+|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3567788887764 67889999999999999999999999998765 578899999999888 6 8899999999
Q ss_pred HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCC--CCHHHHhhHHHHHHh----cCCc
Q 001392 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAE----KGQF 691 (1088)
Q Consensus 618 ~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~l~~----~g~~ 691 (1088)
++.... +..+++.||.+ |....... +++.+|+.+|++++..+| .++.+++.||.+|.. .+++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~-y~~g~g~~--------~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARV-LVNRQAGA--------TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHTT---CHHHHHHHHHH-HTCGGGSS--------CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHCC---CHHHHHHHHHH-HHcCCCCc--------cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 887653 56777788877 76521111 678888888888888887 357888888888887 7788
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHc-c-----CHHHHHHHHHHHHHH
Q 001392 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-G-----NFALAMKMYQNCLRK 743 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~-g-----~~~~Ai~~~~~al~~ 743 (1088)
.+|+.+|+++.+. | .++.++++||.+|... | ++.+|+.+|++++..
T Consensus 146 ~~A~~~~~~A~~~-~-----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 146 VKASEYFKGSSSL-S-----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHT-S-----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 8888888888876 3 3567888888888764 3 788888888888876
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=1.6e-12 Score=156.72 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=134.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
.|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 001392 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT---GQHFLVEQLTETALAV 297 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~ 297 (1088)
+++++++|++..++..+|.++...|+ +++|+..|+++++.+|.++.++..++.++... |++++|...+++++..
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999999999999999 9999999999999876
Q ss_pred cCCCCCchHHHHHHH
Q 001392 298 TNHGPTKSHSYYNLA 312 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la 312 (1088)
.+ .....+..++
T Consensus 158 ~p---~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GV---GAVEPFAFLS 169 (568)
T ss_dssp TC---CCSCHHHHTT
T ss_pred CC---cccChHHHhC
Confidence 53 3334444444
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.43 E-value=6.3e-13 Score=128.30 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
-..|++++..+|.++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.+|..+|++++|+..|+++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHh
Q 001392 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 741 l~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 788 (1088)
+.. .|.++.+++.+|.+|...|++++|+.+|++++.+.|+++....
T Consensus 82 l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 82 AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 998 6778899999999999999999999999999999999887643
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.43 E-value=1.7e-10 Score=134.62 Aligned_cols=209 Identities=11% Similarity=0.004 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 437 (1088)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~ 437 (1088)
.......|++++...|..+.+|...+..+...|+.+.|..+|++++.. |.+...|+..+.....+. . +..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~---~---~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA---V---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH---H---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH---H---HHHHHH
Confidence 345678999999999999999999999999999999999999999999 998877776555432221 1 222221
Q ss_pred HHHhc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001392 438 LLKKA--------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 438 ~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
..... ....+..+|...+....+.+..+.|..+|.++ ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-------------------------------- 314 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-------------------------------- 314 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------------------------------
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------------------------------
Confidence 11000 00012356777777777788899999999998 41
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcC-CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 588 (1088)
++....++...|.+-...+ +++.|..+|+.+++..|+.+..+...+......|+.+.|..+|+++
T Consensus 315 -----------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~--- 380 (493)
T 2uy1_A 315 -----------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL--- 380 (493)
T ss_dssp -----------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS---
T ss_pred -----------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 1123445555566555445 6999999999999999999888888888888999999999999997
Q ss_pred CCCChhHHHhhhhhhhcccchHHHHHHHHHhhh
Q 001392 589 NGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1088)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 621 (1088)
+....+|..+..+-...|+.+.+..++++++.
T Consensus 381 -~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 -EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678888888888888999999999998875
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.43 E-value=7.6e-13 Score=138.96 Aligned_cols=206 Identities=13% Similarity=0.016 Sum_probs=160.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhhchHHhHHHHHHHHHHHHHhCCCCH-----
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----- 268 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----- 268 (1088)
+..|..+ ..+++..|...|.+++.++|+..++|+.+ +.++...+. ..+++..+++.+.+.|...
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcCChhhhhhhhc
Confidence 3444444 46788888888888888888888888888 677777666 6777778888887666433
Q ss_pred ----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 269 ----------------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 269 ----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+...++.++...|+|++|..+|..++. ..|... ..+.+|.+++..+++++|+.+|..+.
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 3445578888999999999999987764 346666 88999999999999999999998665
Q ss_pred HhcCCCCC--chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 001392 333 KEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1088)
Q Consensus 333 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p 407 (1088)
. .++. ...+++.+|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|
T Consensus 163 ~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 163 K---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp G---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred c---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4 2112 13478999999999999999999999998543 54 567899999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001392 408 RDAQAFIDLGE 418 (1088)
Q Consensus 408 ~~~~~~~~la~ 418 (1088)
. ..++..|..
T Consensus 240 ~-~~~~~aL~~ 249 (282)
T 4f3v_A 240 E-PKVAAALKD 249 (282)
T ss_dssp C-HHHHHHHHC
T ss_pred c-HHHHHHHhC
Confidence 8 777665543
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.42 E-value=3.8e-13 Score=149.68 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFN 174 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~ 174 (1088)
|.+|+..|.+++..+|.++.++..+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.+++.
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888889999999999999999999999999999999999998 6999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHH-
Q 001392 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG- 253 (1088)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A- 253 (1088)
.|+|++|+..|++++.++|.+ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++ +.+|
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~ 284 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QLARE 284 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999 78899999999999999999999999999999999999999999999988 7777
Q ss_pred HHHHHHHHHh
Q 001392 254 MEKMQRAFEI 263 (1088)
Q Consensus 254 l~~~~~al~~ 263 (1088)
...|.+++..
T Consensus 285 ~~~~~~~~~~ 294 (336)
T 1p5q_A 285 KKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4466666543
No 123
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.42 E-value=7.6e-12 Score=117.91 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1088)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1088)
++..+|.+|...|... +|+.+|.+++..+|.++.+++.+|.++...|++++|+..|.+++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHH-----------HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 4667788887777655 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
+..+|.++...|++++|+..|++++...|.. ..++..+|.++...|++++|...|.+++..+|.+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999998 6788999999999999999999999999998863
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.7e-12 Score=120.10 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=102.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
..+..|+.+|..++..|++++|+..|.+++..+|+++.++..+|.+++..|++++|+..|++++.++|.+ +.+++.+|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 80 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Confidence 4466788899999999999999999999999999999999999999999999999999999999999998 778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLD------PENVEALVALAVMDL 242 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~ 242 (1088)
++..+|++++|+..|++++.++ |.+..++..++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999998 888877777776543
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=5.7e-12 Score=130.02 Aligned_cols=173 Identities=10% Similarity=0.057 Sum_probs=130.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----RYSDSLEFYKR 187 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----~~~~Al~~~~~ 187 (1088)
+|+.+|.++... .++.+++.+|.+|...+++++|+.+|++++.. .++.+++.+|.+|.. + ++.+|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 477788888764 67888888888888888888888888888764 578888888888877 6 88888888888
Q ss_pred HHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----hchHHhHHHHHHHH
Q 001392 188 ALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQ----ANEAAGIRKGMEKM 257 (1088)
Q Consensus 188 al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~----~~~~~~~~~Al~~~ 257 (1088)
+.. +.+ +.+++.+|.+|.. .+++++|+.+|+++++..| .++.+++.||.+|.. .++ +.+|+.+|
T Consensus 79 A~~--~g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 152 (212)
T 3rjv_A 79 AVE--AGS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF 152 (212)
T ss_dssp HHH--TTC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred HHH--CCC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 865 344 5667888888877 7888888888888888777 347888888888877 555 78888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 001392 258 QRAFEIYPYCAMALNYLANHFFFT-G-----QHFLVEQLTETALA 296 (1088)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~l~ 296 (1088)
+++... |.++.+++.|+.+|... | ++++|..+++++..
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 888777 55555666666666543 2 56666666665554
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.40 E-value=2.1e-12 Score=129.12 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV-EFNRGRY--SDSLE 183 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~--~~Al~ 183 (1088)
.+++++|+..|.+++..+|.++.+|+.+|.+++..|++++|+.+|.+++..+|.++.++..+|.+ ++..|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 56777999999999999999999999999999999999999999999999999999999999999 7899999 99999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.|++++..+|.+ ..+++.+|.++...|++++|+..|.+++.++|++......+
T Consensus 103 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 103 MIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999998 77899999999999999999999999999999876554433
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=1.5e-12 Score=140.85 Aligned_cols=197 Identities=11% Similarity=0.023 Sum_probs=138.8
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1088)
|.++..++.+|..++..|++++|+..|.+++..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
.++..+|++++|+..|.+++.++|++...+.......+.. .++...........|.++.+...++.++ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------AKKKRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 9999999999999999999999886532222222222221 1122222222334556665655555543 5666
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASVK 333 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 333 (1088)
+.|+..+..++.. .|........++..+... +.+++|..+|.++..
T Consensus 152 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG---HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT---TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6666666665543 244444444444444444 556666666665543
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.38 E-value=2e-12 Score=123.95 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=112.9
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001392 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (1088)
Q Consensus 662 ~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al 741 (1088)
..|.+++..+|.+..+++.+|.++...|++++|+..|++++...| .++.+|+++|.+|..+|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 742 ~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.. .|.++.+++.+|.+|...|++++|+.+|++++.++|.++........+
T Consensus 80 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 80 LM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred hc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 98 677889999999999999999999999999999999988765554443
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=3.1e-12 Score=138.50 Aligned_cols=198 Identities=15% Similarity=0.027 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchH
Q 001392 447 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526 (1088)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1088)
.+..+..+|..++..|++++|+..|.+++. ..|.++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~ 39 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT-------------------------------------------RNPLVAV 39 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCSCCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------------hCCccHH
Confidence 367888999999999999999999999998 4577889
Q ss_pred HHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcc
Q 001392 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~ 606 (1088)
+++++|.+|...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|.+++.++|+++..+...++.....
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 119 (281)
T 2c2l_A 40 YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987765443333333322
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~ 686 (1088)
.. +...........+. +......++.+ .. |++++|++.|++++..+|.+......++.++.
T Consensus 120 ~~---~~~~~~~~~~~~~~-~~~i~~~l~~l---~~------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 180 (281)
T 2c2l_A 120 AK---KKRWNSIEERRIHQ-ESELHSYLTRL---IA------------AERERELEECQRNHEGHEDDGHIRAQQACIEA 180 (281)
T ss_dssp HH---HHHHHHHHHTCCCC-CCHHHHHHHHH---HH------------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhh-hHHHHHHHHHH---HH------------HHHHHHHHHHHhhhccccchhhhhhHHHHHHH
Confidence 22 22222222223333 44444445533 24 88999999999999999998888888888777
Q ss_pred hc-CCchHHHHHHHHHHHHhc
Q 001392 687 EK-GQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 687 ~~-g~~~~A~~~~~~~~~~~p 706 (1088)
.. +.+++|..+|.++.+..+
T Consensus 181 ~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 181 KHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHHHHHHhhhcccc
Confidence 76 778899999998877543
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.37 E-value=2.8e-11 Score=119.13 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|.+++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++..+|.+ +.+++.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999998 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhchHHhHHHHHHHHHHHHHh
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
..+|++++|+..|.+++.++|.+..++..++.+ +...|+ +++|+..+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence 999999999999999999999999888555444 666666 88888888876543
No 131
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=8.9e-12 Score=132.57 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=170.1
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhc
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~ 605 (1088)
...+.+.++|..+|++.... . .+....+...++..+ . +. |+..|++.+...+.+..++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46666778888888876421 1 111222333333333 2 22 7888888877766667777889999999
Q ss_pred ccchHHHHHHHHHhhhcCC-CCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCC------CHHHH
Q 001392 606 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 678 (1088)
Q Consensus 606 ~g~~~~A~~~~~~al~~~~-~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~ 678 (1088)
.|++++|+.++.+.+...+ .....+...++.+ |+.. |+.+.|.+.++++.+.+|+ .+...
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999888766 2245566666777 8888 8899999999999998882 33333
Q ss_pred hhHHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC--------
Q 001392 679 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-------- 746 (1088)
Q Consensus 679 ~~la~~l~~~g--~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~-------- 746 (1088)
..-+++....| ++..|..+|+++.+..| + .+..+++ ++..+|++++|...++.+++.+|.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 99999999999987765 3 2444555 899999999999999988887643
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHH
Q 001392 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nl 790 (1088)
+.++.++.+++.+.+..|+ +|.+++.++.+.+|++|.+.-..
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 6779999999999999998 89999999999999998754433
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.36 E-value=5.6e-12 Score=124.20 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=108.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
++.++..++.+|.+++..|+|++|+.+|.+++..+|.++.+++.+|.+++..|+|++|+..|++++.++|.+ ..+++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 455678899999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
|.++..+|++++|+..|++++.++|++..+++.++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999887776665443
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.4e-11 Score=145.98 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--Ch
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RY 178 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~ 178 (1088)
++|+..+++++..+|.+..+|..++.++...|+ +++|+.+++.++..+|++..+|..++.++...+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 489999999999999999999999999999998 999999999999999999999999999999999 66
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-----------
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----------- 246 (1088)
++++..+.+++..+|.+ ..+|...+.++..+| .+++++.++.++++.+|.+..+|..++.++...+.
T Consensus 126 ~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999 788999999999999 99999999999999999999999999999887511
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
.+.+++++.++.+++..+|.+..+|++++.++...+.+..
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2448999999999999999999999999999888777544
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=2.4e-11 Score=125.47 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
.++.+|..++..|++++|+..|.+++ +| ++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence 45666777777777777777777764 22 56677777777777777777777777777777776 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 210 LGQLGKARQAFQRALQLDPENV----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
+|++++|+..|++++...|.+. .+++.+|.++...|+ +++|+..|.+++..+|.+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCccc
Confidence 7777777777777777666655 677777777777777 777777777777777765
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.34 E-value=9.7e-12 Score=117.14 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=102.5
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
.|..+..++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++...|.+ ..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 456677888888888888888888888888888888888888888888888888888888888888888887 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
|.++..+|++++|+..|++++..+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888777654
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=5e-12 Score=126.35 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=118.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHHcCCH--
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQL-- 213 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~-~~~~g~~-- 213 (1088)
.+...|++++|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.+ +.+++.+|.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcch
Confidence 34667899999999999999999999999999999999999999999999999999998 7789999999 8899998
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
++|+..|.+++..+|++..+++.+|.++...|+ +++|+..|.+++..+|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999999999999 9999999999999999876443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=1.8e-11 Score=114.62 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=107.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.++..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+ +.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHH
Confidence 455677888899999999999999999999999999999999999999999999999999999999998888 6778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
|.++..+|++++|+..|++++..+|++..++..++.++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888888888888877765
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2e-11 Score=114.09 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|..+..+..+|..++..|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|++++.++|+++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456789999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHF 278 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~------p~~~~~~~~la~~~ 278 (1088)
.++...|+ +++|+..|++++.++ |.+..++..+..+.
T Consensus 80 ~~~~~~~~---~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 TAQIAVKE---YASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhC---HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999 999999999999999 88887777766654
No 139
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.33 E-value=3.1e-09 Score=123.98 Aligned_cols=207 Identities=5% Similarity=-0.009 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhh
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 621 (1088)
.....+|++++...|.++..|+..+..+...|+.+.|...|.+++.. |.+..+|..++... ..++ ....+.....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999 99988887666552 1121 1111111111
Q ss_pred cCC-------CCC-h-HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcC-Cc
Q 001392 622 ATD-------GKD-S-YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-QF 691 (1088)
Q Consensus 622 ~~~-------~~d-~-~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g-~~ 691 (1088)
... .+. . ..+.. |....+ +.+..+.|..+|.++ ...+.....+...|.+....+ +.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~-----y~~~~~--------r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRIN-----HLNYVL--------KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp ----------CHHHHHHHHHH-----HHHHHH--------HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred hhccchhhhhcccccHHHHHH-----HHHHHH--------HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh
Confidence 111 001 1 12222 322211 126789999999999 433334455555565555555 69
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHH
Q 001392 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~ 771 (1088)
+.|..+|+.++...| +++..|..++......|+.+.|..+|+.+. ....++......-...|+...+..
T Consensus 337 ~~ar~ife~al~~~~-----~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHP-----DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999887 677888888888899999999999999872 246666666666677899999999
Q ss_pred HHHHHHH
Q 001392 772 SLLRAIH 778 (1088)
Q Consensus 772 ~l~~al~ 778 (1088)
++++++.
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988885
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.33 E-value=4.4e-11 Score=123.45 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001392 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (1088)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (1088)
..++.+|..|...|... +|+..|.+++ +| ++.+++.+|.+++..|++++|+..|.+++..+|.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWK-----------GALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCHH-----------HHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 34567788888777766 9999999996 34 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+++.+|.+++..|++++|+..|++++...|.+. ..+++.+|.++..+|++++|+..|++++.++|
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999988762 27899999999999999999999999999999
Q ss_pred CC
Q 001392 229 EN 230 (1088)
Q Consensus 229 ~~ 230 (1088)
++
T Consensus 153 ~~ 154 (213)
T 1hh8_A 153 EP 154 (213)
T ss_dssp SG
T ss_pred cc
Confidence 86
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.32 E-value=3.6e-12 Score=130.07 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHc
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNR 175 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~ 175 (1088)
+|...+.......+..+..+..+|..++..|+|++|+..|.+++...|.++ .++..+|.+++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444445566788899999999999999999999999988887 7888899999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++..++..++.++...++
T Consensus 102 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 67788899999999999999999999999999998888888888887776
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=5.2e-11 Score=117.15 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1088)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 159 (1088)
......+..+|.+|...|... +|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 356777888899988888766 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
.++.+++.+|.++...|++++|+..|++++..+|.+ ..++ +.++..+...|++++|+..+.++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999998 5556 44455588899999999999887654
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.31 E-value=6.9e-11 Score=109.59 Aligned_cols=120 Identities=27% Similarity=0.503 Sum_probs=104.5
Q ss_pred CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 001392 124 DMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1088)
Q Consensus 124 ~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1088)
+|.. +.+++.+|.++...|++++|+..|.+++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHH
Confidence 4555 67888899999999999999999999999999999999999999999999999999999999999888 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+|.++...|++++|+..|++++..+|.++.++..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998888888877654
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=3.4e-12 Score=130.33 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------------
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------------- 196 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------------- 196 (1088)
..-..+......|.++.|...+.......+..+..+..+|.+++..|+|.+|+..|.+++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3344555666778888888888877777777788999999999999999999999999999999884
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 197 --GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1088)
Q Consensus 197 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1088)
..+++.+|.|+..+|++++|+..|.+++.++|.+..+++.+|.++...|+ +++|+..|++++.++|.++.++..+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 27899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhcCCHHHHH
Q 001392 275 ANHFFFTGQHFLVE 288 (1088)
Q Consensus 275 a~~~~~~g~~~~A~ 288 (1088)
+.++...++..++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877776655
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=1.8e-10 Score=122.61 Aligned_cols=256 Identities=12% Similarity=0.035 Sum_probs=166.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
|..++ -..-.|..|+|..++.-.. +..|.+ ....+.+.++++.+|+|.... .+.....+...++..
T Consensus 14 ~~~lf-~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~ 80 (310)
T 3mv2_B 14 PMDYF-NIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF 80 (310)
T ss_dssp -CCTH-HHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH
Confidence 33444 3445566777777776332 333433 345556667777777776321 111111122222222
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~ 284 (1088)
+ . +. |+..|++.+...+.+..+++.+|.++...|+ +++|+..+.+.+..+| .+..+...++.++...|+.
T Consensus 81 ~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~---~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 81 L-D-TK---NIEELENLLKDKQNSPYELYLLATAQAILGD---LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV 152 (310)
T ss_dssp H-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH
T ss_pred h-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH
Confidence 2 2 22 6777777776655556666777777777777 7777777777777775 6777777777777777777
Q ss_pred HHHHHHHHHHHhhcCCCCC----chHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 285 FLVEQLTETALAVTNHGPT----KSHSYYNL--ARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
+.|.+.++.+.... |. ...+...+ +.+....| ++.+|+.+|+++.. ..|........+. ++..+|
T Consensus 153 d~A~k~l~~~~~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln-~~~~~g 225 (310)
T 3mv2_B 153 STASTIFDNYTNAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLN-LHLQQR 225 (310)
T ss_dssp HHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHhcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHH-HHHHcC
Confidence 77777777776543 21 11333333 43355555 89999999999875 3343222222233 899999
Q ss_pred CHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001392 357 DFRSALTNFEKVLEI----------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~ 413 (1088)
++++|...++.+++. +|+++.++.+++.+....|+ .|.+++.++...+|+++.+.
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 999999999987776 48899999899888888887 88999999999999998665
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.30 E-value=3.2e-11 Score=112.78 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~ 201 (1088)
+.++..+|..++..|+|++|+..|.+++..+|+++.++..+|.+++..|+|++|+..|++++.++|... ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999987662 24678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
.+|.++..+|++++|+..|++++...|+ +...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 8999999999999999999999998884 4433
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.30 E-value=4.5e-11 Score=113.40 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=106.3
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1088)
.+|.++..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.+ +.+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999999998 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1088)
+|.++..+|++++|+..|.+++.++|+ +..+...+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 55665555555443
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.29 E-value=4.7e-11 Score=117.51 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=108.9
Q ss_pred CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 671 ~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
++.++.++..+|.++...|++++|+.+|++++...| .++.+|+++|.+|+.+|++++|+..|++++.. .+.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 455778899999999999999999999999999998 78999999999999999999999999999998 67789
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.+++.+|.+|...|++++|+.+|++++.++|+++..+++.+++
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999988777775
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.28 E-value=2.3e-11 Score=112.66 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++ ..+++.+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999998 677889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 209 KLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
.+|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999998887643
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.28 E-value=3.2e-13 Score=157.07 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=134.6
Q ss_pred HHHHHHHHHHH----HhhcCCCChhhHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 109 HFILATQYYNK----ASRIDMHEPSTWVGKGQLL------------LAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (1088)
Q Consensus 109 ~~~~A~~~~~~----a~~~~p~~~~~~~~~g~~~------------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 172 (1088)
.++.|+..+++ ++.++|.. +|...|... ...+++++|+..|..++...|.++.++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 45677776666 66676643 222222211 1345667788888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCh--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
+..|+|.+|+..|++++.+.|.+. ..+++.+|.|+..+|++++|+..|.+++.++|++..+++.+|
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 889999999999999988888874 467888889999999999999999999998888888888888
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1088)
.++...|+ +++|+..|+++++++|.+..++..++.++...+++.++..
T Consensus 359 ~a~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 359 EAQLLMNE---FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 8888989998888888888888888888877777776553
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.28 E-value=9.8e-11 Score=127.69 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=144.7
Q ss_pred CCCCCChHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhch
Q 001392 20 DQLPRDASDILDILKA-EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98 (1088)
Q Consensus 20 ~~lp~~~~~l~~~L~~-e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~ 98 (1088)
+.|.-++.++...... .+.....|...+..|+.+|++++|+..+..++...+.. ......+..+..++.+|...|.
T Consensus 54 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (293)
T 2qfc_A 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVD 130 (293)
T ss_dssp TTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCC
Confidence 4555566777665543 34556688899999999999999999998875432210 1112334445567777766665
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHH
Q 001392 99 IETKQREKEEHFILATQYYNKASRIDMHE------PSTWVGKGQLLLAKGEVEQASSAFKIVL---EADRDNV----PAL 165 (1088)
Q Consensus 99 ~~~~~~~r~~~~~~A~~~~~~a~~~~p~~------~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~a~ 165 (1088)
.. +|+..|.+++...+.. ..++..+|.+|...|++++|+.+|++++ ...|.+. .++
T Consensus 131 ~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 131 YE-----------YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HH-----------HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 55 8999999998765543 4578889999999999999999999998 4556543 688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 001392 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS-----CPGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (1088)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~ 226 (1088)
+.+|.+|...|+|++|+.+|++++...+. ....+++.+|.++..+|++++| ...|++++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999877532 1356788899999999999999 7778888764
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=1e-10 Score=107.26 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=103.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
.+..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.+ +.+++.+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999999988 6778999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
+..+|++++|+..|++++..+|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999998888887664
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.27 E-value=1.9e-10 Score=125.40 Aligned_cols=182 Identities=11% Similarity=0.045 Sum_probs=145.9
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh------HHHhhhhhhhcccchHHHHHHHHHhhhcCCCC-C
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D 627 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-d 627 (1088)
+|.....+...+..+...|++++|+..+.+++...|.... .++.+|.++...|++++|+..|.+++...+.. +
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4555667777888899999999999999999998876543 45678888899999999999999998754331 1
Q ss_pred ----hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH---hcCCCCH----HHHhhHHHHHHhcCCchHHHH
Q 001392 628 ----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 696 (1088)
Q Consensus 628 ----~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~a~~~la~~l~~~g~~~~A~~ 696 (1088)
..++..+|.+ |... |++++|+.+|++++ ...|.+. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 3478889999 9888 99999999999999 4555532 688999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCchhHHHHHHHHHHHccCHHHH-HHHHHHHHHHhcCCCC
Q 001392 697 LFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNTD 749 (1088)
Q Consensus 697 ~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~A-i~~~~~al~~~~~~~~ 749 (1088)
+|++++...+.. .....+.+++++|.+|..+|++++| ..+|++++..+....+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 999999876421 1112377899999999999999999 7779999887644444
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.27 E-value=6e-11 Score=111.64 Aligned_cols=122 Identities=17% Similarity=0.263 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.|.++.+++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|++++..+|.+..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999999999999999999999998 77899999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
|.++...|+ +++|+..|.+++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999 9999999999999999999888888888876653
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.27 E-value=5.4e-11 Score=111.36 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=114.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
+|.++.+++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|+++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667889999999999999999999999999999998 77899999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
|.++...|+ +++|+..|.+++..+|.++.++..++.++...|++
T Consensus 87 ~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNK---HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCC---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999 99999999999999999999999999888887764
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.26 E-value=6.4e-12 Score=146.10 Aligned_cols=142 Identities=16% Similarity=0.248 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFN 174 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~ 174 (1088)
|.+|+..|..++..+|..+..+..+|..++..|+|++|+..|.+++..+|.+ ..+++.+|.+++.
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888899999999999999999999999999999999998 6899999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHH
Q 001392 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1088)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1088)
.|+|++|+..|++++.++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999 78899999999999999999999999999999999999999999999988 66555
Q ss_pred H
Q 001392 255 E 255 (1088)
Q Consensus 255 ~ 255 (1088)
.
T Consensus 406 ~ 406 (457)
T 1kt0_A 406 R 406 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.24 E-value=6.7e-11 Score=116.14 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
+..+..+|..++..|+|++|+..|.+++.. +|.++.+++.+|.+++..|+|.+|+..|++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457888999999999999999999999998 66667888999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhh
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQA 244 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~ 244 (1088)
.++|.+ +.+++.+|.++..+|++++|+..|++++.++|++. .+...++.+....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999988 67788899999999999999999999999999887 5566666555444
No 158
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=1e-10 Score=127.47 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=116.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCChh------HHHhhhhhhhcccchHHHHHHHHHhhhcCCC-CCh----HHHH
Q 001392 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-KDS----YATL 632 (1088)
Q Consensus 564 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~----~a~~ 632 (1088)
..+..+...|++++|..++++++...+..+. .+..+|.++...|++++|+..|++++...+. .+. .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3355566677777777777777766655544 2234677777777888888888888774332 222 2577
Q ss_pred HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc-------CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHh
Q 001392 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (1088)
Q Consensus 633 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~ 705 (1088)
.+|.+ |... |++++|+.+|++++.. .|....+++++|.+|...|++++|+.++.++++..
T Consensus 160 ~lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 160 AIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 78888 8887 8889999999888842 12244567788888888888888888888888776
Q ss_pred cCC-CCCCchhHHHHHHHHHHHccC-HHHHHHHHHHHHHHhc
Q 001392 706 SGS-VFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFY 745 (1088)
Q Consensus 706 p~~-~~~~~~~~~~~la~~~~~~g~-~~~Ai~~~~~al~~~~ 745 (1088)
+.. .....+.+++++|.+|..+|+ +++|+..|++++..+.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 432 112236678888888888884 6888888888877653
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.24 E-value=3.8e-11 Score=113.72 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-------NVP-----ALLGQACVEFNRGRYSDSLEFYKRALQV---- 191 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----a~~~la~~~~~~g~~~~Al~~~~~al~~---- 191 (1088)
...++.+|..++..|+|++|+..|++++..+|+ +.. +|..+|.++..+|+|++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 346788899999999999999999999999888 333 7778888888888888888888888877
Q ss_pred ---CCCChhHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 192 ---HPSCPGAIR----LGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 192 ---~p~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
+|++ ..+| +.+|.++..+|++++|+..|+++++++|++....
T Consensus 91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 91 GELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 7776 5666 7777777777777777777777777777655433
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.23 E-value=8.2e-11 Score=109.97 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=94.9
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 749 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~---- 749 (1088)
...++..+|.++...|++++|+..|+++++..| +++.+|.++|.+|+.+|++++|+..|++++...|....
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 456778999999999999999999999999998 78999999999999999999999999999998655433
Q ss_pred -HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 750 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 750 -~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
..++..+|.++...|++++|+.+|++++...|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 468889999999999999999999999999985
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-10 Score=111.69 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=108.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
..+|.+...++.+|..++..|++++|+..|++++..+|++ ..+++.+|.+++..|++++|+..|++++..+|.+ ..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH
Confidence 3457788899999999999999999999999999999987 8899999999999999999999999999999988 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
+++.+|.++..+|++++|+..|++++.++|++..++..++.+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88999999999999999999999999999999988887777643
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.22 E-value=2.4e-10 Score=106.99 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGI 203 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~l 203 (1088)
..++.+|.+++..|++++|+..|.+++..+|+++ .+++.+|.+++..|+|++|+..|++++..+|+++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4678899999999999999999999999999887 7999999999999999999999999999998873 4568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
|.++..+|++++|+..|++++...|++..+...+..+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999999999999999999998877666655443
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.21 E-value=4.6e-10 Score=103.91 Aligned_cols=121 Identities=29% Similarity=0.457 Sum_probs=108.3
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 158 DRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 158 ~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
+|.+ ..+++.+|.++...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|.+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4555 7789999999999999999999999999999988 6788999999999999999999999999999999999999
Q ss_pred HHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
+|.++...|+ +++|+..|.+++..+|.++.++..++.++...|
T Consensus 83 la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999998 999999999999999999988888888776543
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.20 E-value=2e-10 Score=108.94 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=104.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 156 ~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
..+|.++..++.+|.+++..|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|++++.++|+++.+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3467889999999999999999999999999999999998 778999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-----CAMALNYLANH 277 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~-----~~~~~~~la~~ 277 (1088)
.+|.++...|+ +.+|+..|.+++.++|. +..+...+..+
T Consensus 82 ~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 82 FLGQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999887 44444444433
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.20 E-value=1.6e-10 Score=106.81 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
..++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357889999999999999999999999999999 7789999999999999999999999999999999999999999999
Q ss_pred hhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
..|+ +++|+..|++++..+|.+.
T Consensus 97 ~~g~---~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHN---ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHH---HHHHHHHHHHHHC------
T ss_pred HcCC---HHHHHHHHHHHHHhCcCCC
Confidence 9998 9999999999999998765
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.19 E-value=1.2e-10 Score=105.59 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=97.2
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--CPGAIR 200 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--~~~~~~ 200 (1088)
++|.++.+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.+++..|++++|+..|++++...|. . ..++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHH
Confidence 368888899999999999999999999999999999999999999999999999999999999999999998 7 6778
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 001392 201 LGIGLCRYKL-GQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 201 ~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 230 (1088)
+.+|.++..+ |++++|+..|.+++...|.+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 8999999999 99999999999999988865
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=7.8e-10 Score=131.06 Aligned_cols=173 Identities=12% Similarity=0.020 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC--
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-- 211 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-- 211 (1088)
.++|+..+.+++..+|.+..+|..++.++...|+ +++++..+.+++..+|++ ..+|...+.++..+|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccc
Confidence 4788999999999999999999999999999998 999999999999999999 788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQAN-EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT--------- 281 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~-~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~--------- 281 (1088)
++++++..+.++++.+|.+..+|...+.+....+ . +++++.++.++++.+|.+..+|+..+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA---PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999999999999999999999999988 6 89999999999999999999999999998775
Q ss_pred -----CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 282 -----GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 282 -----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
+.+++++.++.+++... |.+..+|+.++.++...+.+.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCccc
Confidence 34566666666666543 5555667777666666665433
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.19 E-value=2.5e-10 Score=111.98 Aligned_cols=122 Identities=12% Similarity=0.172 Sum_probs=106.2
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcC--------CC-----CCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG--------SV-----FVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~--------~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
.+..+..+|..+...|++.+|+..|.+++...+. .. .+..+.+|+++|.||+.+|++.+|+..|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456788999999999999999999999998210 00 1266789999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh-hHHhHHHHHHHHH
Q 001392 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY-TLRFDAGVAMQKF 797 (1088)
Q Consensus 741 l~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~nla~~~~~~ 797 (1088)
+.. .|.++.+++.+|.+|...|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 998 788899999999999999999999999999999999998 7788888864443
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.3e-09 Score=126.22 Aligned_cols=175 Identities=9% Similarity=0.115 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HH
Q 001392 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IE 449 (1088)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~ 449 (1088)
++..+|.+|...|++++|+.++.+++...+.. ..+...++.++ ..|+++.|+.++..++...+..+.... ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778888888888888888888887765433 23445566677 788999999999999988877644333 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHH
Q 001392 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1088)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
++.++|.++...|++.+|..++.+++.... .....+..+.++.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-------------------------------------~~~~~~~~~~~~~ 179 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFK-------------------------------------KLDDKPSLVDVHL 179 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-------------------------------------TSSCSTHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHH-------------------------------------hcccchhHHHHHH
Confidence 888999999999999999999999876321 0113456778899
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHcC---Cc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 530 NLARLLEQIHDTVAASVLYRLILFKYQ---DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
.++++|...|++.+|..+|++++...+ .. ...+..+|.++...|++.+|..+|.+++...
T Consensus 180 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 180 LESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999887532 21 4567778888889999999999999988754
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.19 E-value=2.2e-10 Score=124.95 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=108.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc---hhhHhhH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYGL 348 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~l 348 (1088)
+..++..|+++.|..++..++......+.. ...+..+|.++...|++++|+.+|.+++......++. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566666666666666666533222221 1233446777777778888888888877633222221 3357777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEI---Y----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFID 415 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~ 415 (1088)
|.+|...|++++|+.+|++++.. . +....+++++|.+|...|++++|+.++.+++.+.+.. ..+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77788888888888887777742 1 1123467777777777777777777777777664322 667777
Q ss_pred HHHHH-hcC-CHHHHHHHHHHHHHHHHhcCC
Q 001392 416 LGELL-ISS-DTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 416 la~l~-~~~-~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
+|.++ ..| .+++|+.+|++++.+....+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 77777 666 357777777777777665443
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.17 E-value=2.1e-10 Score=117.03 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=120.7
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHh------cCCCCHHH
Q 001392 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 677 (1088)
Q Consensus 604 ~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~a 677 (1088)
+..|++.+|...++.+.. .|.....++..+|.+ |... |++++|+.+|.+++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345666666663333322 333345566666666 6666 777777777777776 34456678
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CC-CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HH
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~-~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~ 751 (1088)
+..+|.++...|++++|+..|.+++....... .+ ....++.++|.++..+|++++|+..|++++.......+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88999999999999999999999998853211 11 23567899999999999999999999999987655555 34
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
++..+|.++...|++++|..+|++++.+...
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999987653
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.15 E-value=8.9e-10 Score=100.77 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
.+.+++.+|.+++..|++++|+..|++++...|.+ +.+++.+|.++...|++++|+..|.+++..+|.++.++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35678899999999999999999999999999998 77889999999999999999999999999999999999999999
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+...|+ +.+|+..|.+++..+|.++.++..++.+.
T Consensus 82 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNR---FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999998 99999999999999999998887776653
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.7e-09 Score=123.48 Aligned_cols=204 Identities=11% Similarity=0.085 Sum_probs=138.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
.|.+.+..|..+...|+|++|+..|..+++..|... .++..+|.+|...|++++|+.+|.+++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888999999999999999999999887643 357888889999999999999998888
Q ss_pred HhCCCCh-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhchHHhHHHHHHHHH
Q 001392 190 QVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1088)
Q Consensus 190 ~~~p~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1088)
...+... ..++..+|.++...|+++.|+..+..++...+ ....++..+|.++...|+ +.+|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~ 159 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---YKDSLALIN 159 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC---hHHHHHHHH
Confidence 7765431 23455677777788888888888888876532 224566677777777777 777777777
Q ss_pred HHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----CchHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 259 RAFEI------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYY 328 (1088)
Q Consensus 259 ~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1088)
+++.. .|....++..++.+|...|++.+|..++.+++......+ .....+..+|..+...|+|.+|..+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 76654 122344555666666666666666666666554322111 12344555566666666666666666
Q ss_pred HHHHH
Q 001392 329 MASVK 333 (1088)
Q Consensus 329 ~~al~ 333 (1088)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.14 E-value=2.2e-10 Score=108.57 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------Ch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-------CP----GAIRLGIGLCRYKLGQLGKARQAFQRALQL---- 226 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-------~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 226 (1088)
...+..+|..++..|+|++|+..|++++.++|+ +. ..+|.++|.|+..+|++++|+..|.+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999999 31 238999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 227 ---DPENVEAL----VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 227 ---~p~~~~a~----~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
+|++..+| +.+|.++...|+ +++|+..|+++++++|.+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999 999999999999999877643
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.14 E-value=1.6e-10 Score=109.09 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 173 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~la~~~~ 173 (1088)
..|.+.|++|+..|.++++++|.++.+|+.+|.++...|++ ++|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999998875 48888888888888888888888888777
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
..|.+ .|.. +. ..|++++|+.+|+++++++|++..
T Consensus 92 ~lg~l-------------~P~~-~~----------a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFL-------------TPDE-TE----------AKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHH-------------CCCH-HH----------HHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred Hhccc-------------Ccch-hh----------hhccHHHHHHHHHHHHHhCCCCHH
Confidence 76532 2222 00 024566666666666666666654
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.13 E-value=6.8e-10 Score=113.25 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=96.6
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhcC
Q 001392 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG 390 (1088)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g 390 (1088)
..|++++|...++.... .++....++..+|.++...|++++|+.+|.+++.. .|....++..+|.+|...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333322 22344555666666666666666666666666552 2233456666777777777
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 001392 391 QIEKAQELLRKAAKI---DPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~---~p~~----~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~ 461 (1088)
++++|+.++.+++.+ .+++ ..++..+|.++ ..|++++|+.++.+++...+..+.... ..++.++|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777776665 3322 44566677777 777777777777777776555432211 34567788888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 001392 462 GEFESAHQSFKDALGD 477 (1088)
Q Consensus 462 g~~~~A~~~l~~al~~ 477 (1088)
|++++|+.+|.+++..
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888888888774
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=1.2e-09 Score=102.24 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN---VEALVAL 237 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 237 (1088)
.+++.+|.+++..|+|++|+..|++++...|+++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 45788999999999999999999999999998832 678999999999999999999999999999999 8899999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
|.++...|+ +++|+..|++++..+|+++.+......+..
T Consensus 83 a~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGK---NTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999 999999999999999999877665555443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.12 E-value=7.2e-10 Score=103.63 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1088)
.+..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+.+|++++...|... ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999877541 5578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
+.+|.++..+|++++|+..|++++...| ++..+..++.+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988 6777777776655443
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.11 E-value=9.2e-11 Score=130.41 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=79.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
.+..+..+|..++..|+|++|+..|.+++...|.+. .+++.+|.+++..|+|++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788899999999999999999999999998876 377777777777777777777777777
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhHHHHHHHHHHHHHhCCCCH
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
.++|++ ..+++.+|.+|..+|++++|+..|++++.++|++..++..++.+.... +. ...+...|.+++...|.++
T Consensus 258 ~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 258 TEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCCC
Confidence 777777 666777777777777777777777777777777777777777664332 23 5666677777777776654
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.5e-09 Score=104.15 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=109.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
.+|.+...++.+|.+++..|+|.+|+..|++++...|++ ...+++.+|.++...|++++|+..|.+++..+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 357789999999999999999999999999999999975 256789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+.+|.++...|+ +++|+..|.+++..+|.+..++..++.+.
T Consensus 103 ~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGR---LDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999 99999999999999999998887776654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.08 E-value=4.5e-11 Score=139.47 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|+|++|+..|++++.++|.+ ..+++.+|.+|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 44566778888899999999999999999999999999999999999999999999999999999998 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhchHHhHHHHHHHHH-----------HHHHhCCCC
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQ-----------RAFEIYPYC 267 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~-----------~al~~~p~~ 267 (1088)
..+|++++|+..|+++++++|++..++..++.+ +...|+ +++|+..+. +++..+|..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999998888888887 777777 889999888 666666653
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.08 E-value=1.2e-09 Score=102.09 Aligned_cols=119 Identities=14% Similarity=0.186 Sum_probs=106.1
Q ss_pred CCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC-CC--
Q 001392 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD-- 749 (1088)
Q Consensus 673 ~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~-~~-- 749 (1088)
..+.++..+|.++...|++++|+.+|.+++...| .++.+++++|.+|...|++.+|+..|++++...+.. .+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3456788999999999999999999999999987 678999999999999999999999999999986542 33
Q ss_pred --HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 750 --AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 750 --~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
+.+++.+|.++...|++++|+.+|++++...| ++.+...++.++...
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999 688888888875443
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.05 E-value=1.7e-09 Score=97.84 Aligned_cols=106 Identities=8% Similarity=-0.069 Sum_probs=101.5
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--ChhHHHh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSM 598 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~ 598 (1088)
.|.+..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++...|++++|+.++++++..+|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhhhhcc-cchHHHHHHHHHhhhcCCCC
Q 001392 599 LGDLELKN-DDWVKAKETFRAASDATDGK 626 (1088)
Q Consensus 599 l~~~~~~~-g~~~~A~~~~~~al~~~~~~ 626 (1088)
+|.++... |++++|+..|.+++...|..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999988763
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.05 E-value=2.2e-11 Score=142.01 Aligned_cols=126 Identities=13% Similarity=0.223 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.++|++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCCHHH
Q 001392 187 RALQVHPSCPGAIRLGIGLC--RYKLGQLGKARQAFQ-----------RALQLDPENVEA 233 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~a 233 (1088)
+++..+|++ ..++..++.+ +...|++++|+..++ +++.++|+...+
T Consensus 99 ~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 99 TVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 999999998 6678888888 889999999999999 888888775444
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.04 E-value=1.6e-09 Score=121.55 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLE----------------ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
..+..+|..++..|+|++|+..|++++. .+|.+..++..+|.+++..|+|++|+..|++++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4578889999999999999999999988 566677788888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
|.+ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++
T Consensus 304 p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 877 66778888888888888888888888888888888888888777777665
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.04 E-value=3.3e-10 Score=104.11 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 108 EHFILATQYYNKASRI---DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
|++++|+.+|++++.. +|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556777778887777 5777777777788877778888888888887777777777777777777777777777777
Q ss_pred HHHHHHhCCCC
Q 001392 185 YKRALQVHPSC 195 (1088)
Q Consensus 185 ~~~al~~~p~~ 195 (1088)
|++++...|.+
T Consensus 84 ~~~al~~~p~~ 94 (117)
T 3k9i_A 84 LLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhCCCc
Confidence 77777777777
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.04 E-value=2.4e-10 Score=127.03 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCh-----------------hhHHHHHHHHHHcC
Q 001392 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP-----------------STWVGKGQLLLAKG 142 (1088)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~~g~~~~~~g 142 (1088)
+.....+..+|..|+..|++. +|+.+|.+++...|.+. .+|+.+|.+|+..|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~-----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLE-----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCH-----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566777777777776665 99999999999999876 48999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHHcCCHHHHHHHHH
Q 001392 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQ 221 (1088)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~-~~~~g~~~~A~~~~~ 221 (1088)
+|++|+..|.+++..+|+++.+++.+|.++...|+|++|+..|++++.++|++ ..++..++.+ ....+..+.+...|.
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 6778888888 445678889999999
Q ss_pred HHHhhCCCCHH
Q 001392 222 RALQLDPENVE 232 (1088)
Q Consensus 222 ~al~~~p~~~~ 232 (1088)
+++...|.++.
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999997653
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.03 E-value=6.6e-10 Score=104.97 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
.+.|++|+..|+.++..+|+++.+|+.+|.++...++++.+.... +.+++|+..|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~~l 69 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHHHH
Confidence 345666666666666666666666666666666665544222211 0245777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhch--------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 221 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1088)
+++++++|++..+|+.+|.+|...|. .+++++|+.+|+++++++|++......+..+
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777777777776642 1349999999999999999998877766543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.03 E-value=3.5e-10 Score=103.94 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=79.1
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHH
Q 001392 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1088)
Q Consensus 140 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1088)
..|++++|+..|++++.. +|+++.+++.+|.+++..|+|++|+..|++++..+|++ +.+++.+|.|+..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 368888999999999988 58888889999999999999999999999999999988 77788899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHH
Q 001392 217 RQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~ 235 (1088)
+..|++++...|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999888877644
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.00 E-value=2.5e-09 Score=104.17 Aligned_cols=141 Identities=11% Similarity=0.050 Sum_probs=118.4
Q ss_pred HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC------HHHHhhHHHHHHhcCCchHHHHHHHHHH
Q 001392 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQ 702 (1088)
Q Consensus 629 ~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~la~~l~~~g~~~~A~~~~~~~~ 702 (1088)
.++..+|.+ |... |++++|+.+|.+++...|.. ..++..+|.++...|++++|+.+|.+++
T Consensus 10 ~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778888 8888 99999999999999886542 2578899999999999999999999999
Q ss_pred HHhcCCC-CCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001392 703 EAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1088)
Q Consensus 703 ~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al 777 (1088)
...+... .+....++.++|.++...|++++|+..|++++.......+ +.++..+|.++...|++++|+.++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9875321 1123668999999999999999999999999988654444 5678899999999999999999999999
Q ss_pred HhCCC
Q 001392 778 HLAPS 782 (1088)
Q Consensus 778 ~~~p~ 782 (1088)
.+...
T Consensus 157 ~~~~~ 161 (164)
T 3ro3_A 157 EISRE 161 (164)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 87653
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.96 E-value=4e-09 Score=118.37 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQ----------------VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~----------------~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
...+..+|..++..|+|++|+..|++++. ..|.. ..+++.+|.|+..+|++++|+..|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999998 55655 67889999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001392 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1088)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1088)
++|++..+++.+|.++...|+ +++|+..|+++++++|.+..++..++.++...+++.++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999988888887777766543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.93 E-value=5.4e-09 Score=101.68 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP------STWVGKGQLLLAKGEVEQASSAFKIV 154 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~------~~~~~~g~~~~~~g~~~~A~~~~~~a 154 (1088)
....++..+|.+|...|... +|+.+|.+++...+... .++..+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFR-----------DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556667777777666555 66666666666544322 35666777777777777777777777
Q ss_pred HHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 155 LEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 155 l~~~p~~------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+...+.. ..++..+|.++...|++++|+..+++++...+.. ...++..+|.++...|++++|+..+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6654322 4466677777777777777777777776653211 2344566677777777777777777766
Q ss_pred HhhC
Q 001392 224 LQLD 227 (1088)
Q Consensus 224 l~~~ 227 (1088)
+.+.
T Consensus 156 ~~~~ 159 (164)
T 3ro3_A 156 LEIS 159 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.84 E-value=2e-08 Score=91.69 Aligned_cols=99 Identities=20% Similarity=0.175 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHH
Q 001392 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1088)
Q Consensus 659 ~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~ 738 (1088)
.|+..|++++..+|.++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.+|..+|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466777777777787777777778877777888888888888777776 567777777777777777777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh
Q 001392 739 NCLRKFYYNTDAQILLYLARTHYE 762 (1088)
Q Consensus 739 ~al~~~~~~~~~~~l~~La~~~~~ 762 (1088)
+++...+...+......+...+..
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHH
Confidence 777776555555544444444433
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.79 E-value=3.7e-08 Score=89.87 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC
Q 001392 192 HPS 194 (1088)
Q Consensus 192 ~p~ 194 (1088)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
No 195
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.79 E-value=2.1e-07 Score=108.45 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=150.8
Q ss_pred HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC-CC
Q 001392 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS 673 (1088)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~ 673 (1088)
++..+...+.+.|++++|..+|..+...+-.++.+++..|... |........ ....+..++|..+|.++.... +.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~~~~~---~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAEAATE---SSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCCCCSS---SSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCCchhh---hhhcchHHHHHHHHHHHHHhCCCC
Confidence 4556667888999999999999999888777788888777666 543311100 011278999999999998876 33
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l 753 (1088)
|..+++.+...|++.|++++|..+|.++....- ..+..+|..+...|.+.|+.++|..+|+.+... +..++..++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI----QPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 889999999999999999999999999988652 136788999999999999999999999999876 467889999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHH
Q 001392 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1088)
Q Consensus 754 ~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nl 790 (1088)
..|..+|.+.|+.++|.++|+++....-.-....|++
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999999999999988644333344444
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.74 E-value=6.5e-08 Score=83.62 Aligned_cols=82 Identities=22% Similarity=0.509 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+.+++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ ..++..+|.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555 44455555554
Q ss_pred HHc
Q 001392 208 YKL 210 (1088)
Q Consensus 208 ~~~ 210 (1088)
..+
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.72 E-value=9e-08 Score=82.72 Aligned_cols=84 Identities=27% Similarity=0.519 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.++.+++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|++++.++|++..++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 346778888888888888888888888888888887 6678888888888888888888888888888888888888887
Q ss_pred HHHhh
Q 001392 240 MDLQA 244 (1088)
Q Consensus 240 ~~~~~ 244 (1088)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 198
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.69 E-value=9.2e-07 Score=102.96 Aligned_cols=184 Identities=11% Similarity=0.003 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCChhHHHhhhhhhhcc---------cchHHHHHHHHHhhhcCCCCChHH
Q 001392 561 AYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYA 630 (1088)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~d~~a 630 (1088)
.+..+...+.+.|++++|+.+|.++...+ +.+..+|..+..++... +..+.|..+|..+...+-.++..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555667778888888888888877664 22455566665555443 457899999999999887789999
Q ss_pred HHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC-CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC
Q 001392 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (1088)
Q Consensus 631 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~ 709 (1088)
+..|... |... |++++|..+|+++.... +.+..+++.+...|++.|++++|..+|..+.+..-
T Consensus 108 yn~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~--- 171 (501)
T 4g26_A 108 FTNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV--- 171 (501)
T ss_dssp HHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC---
Confidence 9999999 9998 99999999999999875 33889999999999999999999999999998752
Q ss_pred CCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 001392 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1088)
Q Consensus 710 ~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~ 762 (1088)
..+..+|..+..+|.+.|++++|..+|+++-... ..++..++..|-..+..
T Consensus 172 -~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 -VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred -CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 2367899999999999999999999999987653 56667777666655554
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.1e-08 Score=92.56 Aligned_cols=91 Identities=13% Similarity=0.243 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hhHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLG 202 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~ 202 (1088)
+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|++ ...+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34555555555555666666666665555555555555555555555555555555555555555554 1223444
Q ss_pred HHHHHHHcCCHHHHHH
Q 001392 203 IGLCRYKLGQLGKARQ 218 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~ 218 (1088)
+|.++..+|+++.|+.
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 4555555544444433
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.68 E-value=3.1e-07 Score=86.71 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 730 (1088)
+++++|+.+|+++...++... . +|.+|...+.+++|+.+|+++.+.. ++.++++||.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHcCCCCCccH
Confidence 889999999999999875443 3 9999999999999999999999864 68999999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCChhHHhHHH
Q 001392 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1088)
Q Consensus 731 ~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~nla 791 (1088)
.+|+.+|+++... .++..++.||.+|.. .+++.+|+.+|+++.+.. ++...++++
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999875 568999999999999 899999999999999984 556666554
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.67 E-value=8.2e-08 Score=84.98 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=56.9
Q ss_pred CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 671 ~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
+|+++.+++.+|.++...|++++|+..|+++++..| +++.+|+++|.+|..+|++++|+..|++++...+...+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 567777777777777777777777777777777766 566677777777777777777777777777665544554
Q ss_pred HHHHHHHHHHHh
Q 001392 751 QILLYLARTHYE 762 (1088)
Q Consensus 751 ~~l~~La~~~~~ 762 (1088)
.....+...+..
T Consensus 78 ~~~~~l~~~l~~ 89 (100)
T 3ma5_A 78 KDLSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444433
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=2.6e-08 Score=89.93 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=88.3
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC------hhHHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALS 597 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~ 597 (1088)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++.++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred hhhhhhhcccchHHHHHHHHHh
Q 001392 598 MLGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~a 619 (1088)
.+|.++...|++..|+..|+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999998888777666543
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.62 E-value=8e-08 Score=85.08 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
+|+++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.+.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 56777777777777777777777777777777777777777777777777777777777777777766543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=1.3e-06 Score=82.40 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al 182 (1088)
.+++.+|+.+|.++.+.. ++.+. +|.+|...+.+++|+.+|+++... .++.+++.+|.+|.. .+++.+|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467889999999998876 44444 999999989999999999999886 589999999999998 89999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
.+|+++... .+ +..++.+|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 82 ~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999999886 34 6678899999999 89999999999999887 3555555444
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.57 E-value=1e-07 Score=84.12 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
+.+|..++..|++++|+..|++++..+|.++. +++.+|.+++..|++++|+..|++++..+|++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 44566666666666666666666666666666 66666666666666666666666666666665
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.54 E-value=1.6e-07 Score=82.80 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
.+.+|.+++..|++++|+..|++++..+|.+ .. +++.+|.++..+|++++|+..|++++.++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 3567889999999999999999999999998 66 89999999999999999999999999999999887743
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
+. +.+++..|.++...+|.++
T Consensus 75 -~~---~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -KM---VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -HH---HHHHHHHHCCTTHHHHCCS
T ss_pred -HH---HHHHHHHHHHHhccCcccc
Confidence 22 7778888888777776543
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.52 E-value=1.4e-05 Score=82.56 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=91.3
Q ss_pred CCCcchHHHHhHHHHHHh---c--C------CHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHc-----CChHHHHHH
Q 001392 520 LPWNKVTVLFNLARLLEQ---I--H------DTVAASVLYRLILFKYQDY--VDAYLRLAAIAKAR-----NNLQLSIEL 581 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~-----g~~~~A~~~ 581 (1088)
..+.++..++..|.+... . | ....|...++++++++|++ ..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456778888877766532 1 3 3578889999999999994 66999999999995 999999999
Q ss_pred HHHHHHHCCCC-hhHHHhhhhhhhcc-cchHHHHHHHHHhhhcCCC
Q 001392 582 VNEALKVNGKY-PNALSMLGDLELKN-DDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 582 l~~al~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~ 625 (1088)
|++++.++|+. ..+++.+|..++.. |++..|...+++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 99999999999885 9999999999999998776
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.50 E-value=2.9e-06 Score=91.76 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=108.8
Q ss_pred HhhcCCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----H---HHHH-HHH
Q 001392 120 ASRIDMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY----S---DSLE-FYK 186 (1088)
Q Consensus 120 a~~~~p~~~~~--~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~----~---~Al~-~~~ 186 (1088)
+...-|.++.+ ++.+|..++..+. +.+|+.+|+++++.+|+++.++..++.++.....+ . .++. .+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 33445666655 4567888877765 58999999999999999999999888887632111 1 1111 111
Q ss_pred H--HHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 187 R--ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 187 ~--al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
. ++...|.. +.++..++..++..|+++.|+..+++++.++| +..++..+|.++...|+ +++|+..|.+++.++
T Consensus 266 a~~a~~~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 NIVTLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM---NREAADAYLTAFNLR 340 (372)
T ss_dssp HHHTCGGGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHhcccCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 1 12345666 67778888888888999999999999999997 46778889999999998 999999999999999
Q ss_pred CCCH
Q 001392 265 PYCA 268 (1088)
Q Consensus 265 p~~~ 268 (1088)
|..+
T Consensus 341 P~~~ 344 (372)
T 3ly7_A 341 PGAN 344 (372)
T ss_dssp CSHH
T ss_pred CCcC
Confidence 9776
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.45 E-value=2.1e-06 Score=92.76 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH-------HHHH-HHHHH--HHHhCCCCHHHHHHHHHHHHHcCC
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-------EQAS-SAFKI--VLEADRDNVPALLGQACVEFNRGR 177 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~-------~~A~-~~~~~--al~~~p~~~~a~~~la~~~~~~g~ 177 (1088)
+.+.+|+.+|+++++++|+++.++..++.+|+....+ ..++ ..+.. ++..+|.++.++..++..+...|+
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 4577999999999999999999999988888632111 1111 12221 224568999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
++.|+..+++++.++|+ ...+..+|.++...|++++|+..|.+|+.++|....
T Consensus 293 ~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999975 456789999999999999999999999999997653
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.39 E-value=2.6e-06 Score=75.72 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=73.3
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~-----~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
++.-++.+|..++..|+|..|+.+|+.+++..... ..+.++..||.++++.|++..|+.++++++.+.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46778899999999999999999999999987432 3388999999999999999999999999999999999999
Q ss_pred hHHHHH
Q 001392 788 FDAGVA 793 (1088)
Q Consensus 788 ~nla~~ 793 (1088)
.|+++.
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 999863
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.38 E-value=2e-06 Score=74.29 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
+|.++..+..+|.+++..++ .++|...|++++..+|+++.+++.+|..++..|+|.+|+..+++++..+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888888888888876665 6889999999999999999999999999999999999999999998888874
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=2.8e-06 Score=97.99 Aligned_cols=125 Identities=13% Similarity=0.025 Sum_probs=64.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHH
Q 001392 314 SYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLK 380 (1088)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~ 380 (1088)
.+..+|+|++|+.+|.+++... +..|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3444555555555555554421 233344445555555555555555555555555543 2222 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 381 ALGHIYVQLGQIEKAQELLRKAAKI-----DPRDA---QAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 381 ~la~~~~~~g~~~~A~~~~~k~l~~-----~p~~~---~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
+||.+|..+|++++|..+|++++.+ .|+++ .....++.++ ..+.+.+|...|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665543 34443 2333444455 555666666666665543
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=4.2e-06 Score=96.47 Aligned_cols=136 Identities=4% Similarity=-0.139 Sum_probs=106.6
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001392 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1088)
Q Consensus 418 ~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 493 (1088)
..+ .+|++++|+..+++++.+....-.+.. ..+++++|.+|..+|+|++|+.++++++.... ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~--~~lG-------- 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM--KLYH-------- 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHSC--------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHcC--------
Confidence 345 789999999999999988776532222 57889999999999999999999999998421 1111
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH--------cCCcHHHHHHH
Q 001392 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRL 565 (1088)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l 565 (1088)
..+|.....+++||.+|..+|++++|+.+|++++.+ ||........+
T Consensus 387 -------------------------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 387 -------------------------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 156778889999999999999999999999999862 34445666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 001392 566 AAIAKARNNLQLSIELVNEALKV 588 (1088)
Q Consensus 566 a~~~~~~g~~~~A~~~l~~al~~ 588 (1088)
+.++..++.+.+|...|.++.+.
T Consensus 442 ~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 442 MQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888777553
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.28 E-value=5.8e-05 Score=77.95 Aligned_cols=192 Identities=14% Similarity=0.018 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcC---------------------ChHHHHHHHHHHHHHCCCChhHHHhhhhh
Q 001392 544 ASVLYRLILFKYQDYVDAYLRLAAIAKARN---------------------NLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1088)
Q Consensus 544 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~l~~al~~~p~~~~~~~~l~~~ 602 (1088)
.+.+++-++..+|++.......+..|..-. ++..|..+|.++....-.-.... .-+.+
T Consensus 51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~-~~~~~ 129 (301)
T 3u64_A 51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETA-YPGFT 129 (301)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh-CccHH
Confidence 456677778889998766655555543321 13345555555443210000000 00011
Q ss_pred -hhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCC--CHHHHh
Q 001392 603 -ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAAN 679 (1088)
Q Consensus 603 -~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~ 679 (1088)
-+..++. ..+..++......+...++..|.+ +...+...+.. -..-+....|...++++++++|+ +..++.
T Consensus 130 ~~~~~~~~----~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg-~~Al~~l~~A~a~lerAleLDP~~~~GsA~~ 203 (301)
T 3u64_A 130 REVFSGDE----QRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLG-SALPDTVHAAVMMLERACDLWPSYQEGAVWN 203 (301)
T ss_dssp HHHTSSCH----HHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTT-SCCHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHhcch----hhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCC-hHHHHhHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 1122221 234455554444466666655555 44432211110 01126778888899999999998 666888
Q ss_pred hHHHHHHhc-----CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH-ccCHHHHHHHHHHHHHHhcC
Q 001392 680 GAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA-QGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 680 ~la~~l~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~-~g~~~~Ai~~~~~al~~~~~ 746 (1088)
.+|.+|... |+.++|..+|++++++.|+ .+.++++.+|..++. +|++..|..++++++..-+.
T Consensus 204 ~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 204 VLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 888888874 7888888888888888872 137788888888777 48888888888888876443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=7.1e-06 Score=76.46 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~-p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
..+.+.|...+..+|.+..+.+.+|.++.+.+ ++.+++.+|+.++..+ |......++.+|..++++|+|++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34445555555555555555555555555555 4445666666555555 4233455566666666666666666666
Q ss_pred HHHHhhCCCCHHHHHHH
Q 001392 221 QRALQLDPENVEALVAL 237 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~l 237 (1088)
+++++.+|+|..+....
T Consensus 95 ~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 66666666665554433
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.22 E-value=7.7e-06 Score=70.51 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 158 DRDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
+|+++..+..+|.+++..++ ..+|..++++++..+|++ +.+++.+|..++..|+|.+|+..|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68899999999999987665 799999999999999999 7778889999999999999999999999998874
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=1.8e-05 Score=73.71 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEAD-R-DNVPALLGQACVEFNRGRYSDSL 182 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~Al 182 (1088)
+.+..+...|.+.+..+|.++.+.+..|.++...+ ++++++.+|+.+++.+ | .+..+++.+|..+++.|+|.+|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44557888888888889999999999999999998 6779999999999998 7 56899999999999999999999
Q ss_pred HHHHHHHHhCCCCh
Q 001392 183 EFYKRALQVHPSCP 196 (1088)
Q Consensus 183 ~~~~~al~~~p~~~ 196 (1088)
.+++++++..|++.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999993
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.00 E-value=4.5e-05 Score=67.56 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHP------SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
+.-.+.+|..++..|+|..|+.+|+.++...+ .....++..+|.|++++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 44556677777777777777777777776531 123667788888888888888888888888888888887766
Q ss_pred HHH
Q 001392 236 ALA 238 (1088)
Q Consensus 236 ~la 238 (1088)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.93 E-value=2.8e-05 Score=88.03 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=73.3
Q ss_pred hcCCchHHHHHHHHHHHHhcC---CCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc---CCCC---HHHHHHHH
Q 001392 687 EKGQFDVSKDLFTQVQEAASG---SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY---YNTD---AQILLYLA 757 (1088)
Q Consensus 687 ~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~---~~~~---~~~l~~La 757 (1088)
..|++++|+.+++++++.... +.+|....++.+||.+|..+|+|++|+.+|++++..+. .+.+ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888888888876532 33445566788888888888888888888888887542 2223 55677888
Q ss_pred HHHHhhccHHHHHHHHHHHHHh-----CCCChhH
Q 001392 758 RTHYEAEQWQDCKKSLLRAIHL-----APSNYTL 786 (1088)
Q Consensus 758 ~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~ 786 (1088)
.+|..+|++++|...|++|+.+ .|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888775 4555543
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.75 E-value=9.1e-05 Score=83.86 Aligned_cols=104 Identities=8% Similarity=0.027 Sum_probs=84.9
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcC
Q 001392 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1088)
Q Consensus 460 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1088)
..|+|++|+.++++++.... .++ -..+|....++.++|.+|..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~--~~l---------------------------------g~~Hp~~a~~~~nLa~~y~~~g 354 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS--SVF---------------------------------EDSNVYMLHMMYQAMGVCLYMQ 354 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT--TTB---------------------------------CTTSHHHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHhh--Ccc---------------------------------ChhchHHHHHHHHHHHHHHhhc
Confidence 46899999999999998421 111 1156677889999999999999
Q ss_pred CHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCChhHHHh
Q 001392 540 DTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (1088)
Q Consensus 540 ~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~ 598 (1088)
++++|+.++++++.+ +|+....+++||.+|..+|++++|..+|++++.+ .|++|.+...
T Consensus 355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999973 4556778999999999999999999999999886 4777765543
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.73 E-value=0.00015 Score=64.84 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHH---HHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhccHH
Q 001392 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQ 767 (1088)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~---Ai~~~~~al~~~~~~--~~~~~l~~La~~~~~~g~~~ 767 (1088)
.+...|.+....++ .+..+.+++||++....+... +|.+++..++. .. ..-..+|+||.++++.|+|.
T Consensus 19 ~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 34445555544443 467788888888888776666 88888887765 21 23678999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 768 DCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 768 ~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
+|+++++.++++.|+|..+.--...+
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999987755444443
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.73 E-value=0.00023 Score=63.72 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-CCChhHHHHHHHHHHHHcCCHHHHHHH
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~---Al~~~~~al~~~-p~~~~~~~~~lg~~~~~~g~~~~A~~~ 219 (1088)
...+...|...+..++.+..+.+.+|.++.+..+... ++.+++.++... |......++.+|..++++|+|..|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445556666666666667777777777777666555 777777776665 433456677777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q 001392 220 FQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~ 240 (1088)
++.+|+..|+|..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777765544433
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.67 E-value=0.00032 Score=79.55 Aligned_cols=107 Identities=5% Similarity=-0.078 Sum_probs=86.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHH
Q 001392 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1088)
Q Consensus 457 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1088)
-+...|++++|+..+++++.... . .....+|....++.++|.+|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~--~---------------------------------~lg~~h~~~~~~~~~L~~~y~ 340 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNS--E---------------------------------RLPDINIYQLKVLDCAMDACI 340 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSS--C---------------------------------CCCTTSHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhcc--C---------------------------------cCCccchHHHHHHHHHHHHHH
Confidence 35577999999999999997421 0 011145667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCChhHHHh
Q 001392 537 QIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~ 598 (1088)
.+|++++|+.++++++.. +|.....++.||.+|..+|++++|..++++++.+ .|++|.+...
T Consensus 341 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 999999999999999973 4555778999999999999999999999999876 5777765443
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.62 E-value=0.00026 Score=80.32 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=51.6
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHhh
Q 001392 278 FFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYG 347 (1088)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~ 347 (1088)
+...|+|++|+.++++++.. .+.+|....++.++|.+|..+|+|++|+.++.+++... +..|.....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34556666666666666542 22334445556666666666666666666666665421 233444445556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
+|.+|..+|++++|+.+|++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 225
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.51 E-value=0.076 Score=64.42 Aligned_cols=244 Identities=14% Similarity=0.069 Sum_probs=125.5
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------c----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh-
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------Y----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 593 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~- 593 (1088)
.-+++.+|.++...+ .++..++...+..... . ..+.+.||.++.-.++ +++...+..++..+....
T Consensus 413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 345555666655444 4677777777754320 1 1344556666555554 456677777665432211
Q ss_pred -hHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH--HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 594 -NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 594 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~--a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
.+-..+|.++...|+-+....++..+...... +.. +-.+||.+ .. |+.+.+-.+.+.+..
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll---~~------------g~~e~~~~li~~L~~- 552 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALI---NY------------GRQELADDLITKMLA- 552 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHH---TT------------TCGGGGHHHHHHHHH-
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhh---hC------------CChHHHHHHHHHHHh-
Confidence 24456777778888776666666655543221 221 23334432 22 444444444444333
Q ss_pred CCCCHH----HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001392 671 HTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 671 ~p~~~~----a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 746 (1088)
++ ++. +...+|..|+..|+...-..++..+... +. ++..-.-.+|..+...|+.+.+..++ .....
T Consensus 553 ~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~----d~VRraAViaLGlI~~g~~e~v~rlv----~~L~~ 622 (963)
T 4ady_A 553 SD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SN----DDVRRAAVIALGFVLLRDYTTVPRIV----QLLSK 622 (963)
T ss_dssp CS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SC----HHHHHHHHHHHHHHTSSSCSSHHHHT----TTGGG
T ss_pred CC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-Cc----HHHHHHHHHHHHhhccCCHHHHHHHH----HHHHh
Confidence 22 333 3345677778888865444466666542 20 12222233334444456654333333 32223
Q ss_pred CCCHHHHHHHHHHHHh--hcc-HHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHh
Q 001392 747 NTDAQILLYLARTHYE--AEQ-WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS 800 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~--~g~-~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~ 800 (1088)
..++.+.+..+.++-. .|. ..+++..+.++.+ + .+..++.+..+.+...+..
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D-~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-D-PVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-C-SSHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-C-CCHHHHHHHHHHHHHHhcC
Confidence 4566665554444433 233 2678888887754 3 3566666666665555543
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.41 E-value=0.0014 Score=59.67 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=93.4
Q ss_pred CCCcchHHHHhHHHHHHhcCCH------HHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 520 LPWNKVTVLFNLARLLEQIHDT------VAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~l~~a 585 (1088)
..|.++..|......+...|++ +.-+..|++++..-|. |+..|.+.+.. ...++.+.|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5688999999999999999999 8888999999987664 46667777755 5669999999999999
Q ss_pred HHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001392 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1088)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~ 628 (1088)
+.+......+|...+.+..++|+...|.+++.+++...|.+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 9998888889999999999999999999999999999887433
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.37 E-value=0.00075 Score=63.11 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------VPALLGQACVEFNRGRYSDSLEFYKRALQVH---PSC- 195 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~---p~~- 195 (1088)
.+++.....++..|.|+.|+-....++....++ ..++..+|.+++..|+|..|...|++++... +..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666667777777777777777655543222 2366777777777777777777777765531 111
Q ss_pred --------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 196 --------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 196 --------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
...+.+.++.|+..+|++.+|+..++.+-. .-..+.....||.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 125788899999999999999988775321 123666777777664
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.22 E-value=0.72 Score=56.06 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
|+.+..|..++++.+.+...|.+++. .++...-+.++..+...+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56788999999999999999999874 456666666776665543
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.17 E-value=0.0048 Score=55.99 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=67.0
Q ss_pred CchhHHHHHHHHHHHccC---HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHH
Q 001392 712 QMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 712 ~~~~~~~~la~~~~~~g~---~~~Ai~~~~~al~~~~~~~-~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
..+.+.|++||++....+ ..++|.+++..++. .+. .-..+|+||..+++.|+|.+|+++...++++.|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 468899999999999865 45799999999886 333 378999999999999999999999999999999997755
Q ss_pred hHHHHH
Q 001392 788 FDAGVA 793 (1088)
Q Consensus 788 ~nla~~ 793 (1088)
--...+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.05 E-value=0.011 Score=53.78 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=35.2
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH
Q 001392 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1088)
..++.+.|...|+.++.+......+|...|....++|+ ...|...+.+++.+.|....
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBCHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCcHH
Confidence 34566666666666666555555556666666666666 66666666666666665443
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.01 E-value=0.0066 Score=54.33 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHccC---HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHh
Q 001392 713 MPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~---~~~Ai~~~~~al~~~~~~~-~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 788 (1088)
.+.+-+++||++.+..+ ..++|.+++..++. .+. .-..+++||.++++.|+|.+|+++...++++.|+|..+.-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 68899999999998764 45799999998886 332 3789999999999999999999999999999999987655
Q ss_pred HHHHH
Q 001392 789 DAGVA 793 (1088)
Q Consensus 789 nla~~ 793 (1088)
-...+
T Consensus 117 Lk~~I 121 (134)
T 3o48_A 117 LKSMV 121 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.98 E-value=0.016 Score=52.62 Aligned_cols=82 Identities=10% Similarity=0.071 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
+.++.+.+.+|.++.+..+. ..++.+++.++...|.......+.+|..++++|+|..|+.+.+.+|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34567777777777776643 467777777777777666777778888888888888888888888888888877655
Q ss_pred HHHHH
Q 001392 236 ALAVM 240 (1088)
Q Consensus 236 ~la~~ 240 (1088)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 233
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.94 E-value=0.0045 Score=57.90 Aligned_cols=138 Identities=18% Similarity=0.138 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC------chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 001392 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT------KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1088)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1088)
++..-...++..|.|+.|+-+...++...+.++. ...++..+|.+++..|+|..|..+|.++++....-+....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444455667778888888888887766544333 2457888999999999999999999998863322111111
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
+...++. ...+.. ... .+...++.+.++.||...+++.+|+..++.+-.. -..+.+...||.+|
T Consensus 102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 1101100 000000 011 1335577777888888888888888877654221 23566677777665
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.83 E-value=0.019 Score=51.40 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 160 DNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
.++.+.+.+|.++.+..+ ...++.+++.++..+|......++.+|..++++|+|..|+.+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 356777788887777764 34688888888888876667778888888888888888888888888888888877665
Q ss_pred HHHHH
Q 001392 237 LAVMD 241 (1088)
Q Consensus 237 la~~~ 241 (1088)
...+.
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.80 E-value=0.31 Score=53.50 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh-HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
...+.+|..|.++|+.++...++..... +++.- +..-..+...|...+....... +..++--..+++.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~ 88 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP-----FLSSISKAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT-----GGGGSCHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHhchHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHH
Confidence 4789999999999999999999998643 23321 2222334555555555443222 2233333333333
Q ss_pred HhhcCCCChhhH----H--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 120 ASRIDMHEPSTW----V--GKGQLLLAKGEVEQASSAFKIVLEADRD--N----VPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 120 a~~~~p~~~~~~----~--~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
+- +.-..| + .+|..|+..|+|.+|...+.+++..-.. + ...+.....+|...+++.++...|.+
T Consensus 89 a~----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 89 AK----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 222233 2 6899999999999999999988775321 1 45677778889999999999999988
Q ss_pred HHHhC------CCChhHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 001392 188 ALQVH------PSCPGAIRLGIGLCRY-KLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 188 al~~~------p~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 226 (1088)
+.... |...+.+...-|..+. ..++|..|...|-.++..
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 86543 1123445566788888 899999999998888754
No 236
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.69 E-value=0.013 Score=71.08 Aligned_cols=114 Identities=9% Similarity=-0.082 Sum_probs=88.3
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l 753 (1088)
....++.+...|++.|++++|..+|..+.+..... ...+..+|..|...|++.|++++|.++|..+... +-.+|..+|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 45678889999999999999999998775431000 0136788999999999999999999999998765 367888999
Q ss_pred HHHHHHHHhhccH-HHHHHHHHHHHHhCCCChhHHhH
Q 001392 754 LYLARTHYEAEQW-QDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 754 ~~La~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
..|..++++.|+. ++|.++|+.+....-.-..+.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 9999999999884 67889999888875544444454
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.62 E-value=0.14 Score=56.40 Aligned_cols=294 Identities=11% Similarity=0.067 Sum_probs=164.0
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCChhHH--
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNAL-- 596 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~-- 596 (1088)
-.+.+.+|.+|...|++++-..++.......+..+ .....+...+.. -+..+.-++++..+++-..+.-..|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999888877654333322 222233333332 2444555566666655332222222
Q ss_pred ----HhhhhhhhcccchHHHHHHHHHhhhcCCCCC-h----HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 597 ----SMLGDLELKNDDWVKAKETFRAASDATDGKD-S----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 597 ----~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d-~----~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
..+|.+|+..|+|.+|...+.++.......| . ..+.....+ |... +++.++...|.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~a 165 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHHH
Confidence 3789999999999999999998887432212 1 122223334 5555 7778888888777
Q ss_pred HhcC---CCCH----HHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHH-
Q 001392 668 IVQH---TSNL----YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ- 738 (1088)
Q Consensus 668 l~~~---p~~~----~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~- 738 (1088)
.... +.++ .....-|.++. ..++|..|...|-.+...+.....+....+...++.|-+-.+...+--....
T Consensus 166 ~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~ 245 (394)
T 3txn_A 166 RTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSG 245 (394)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHS
T ss_pred HhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcc
Confidence 5532 1222 22334588888 8999999999999998777432211222334444555555554222222211
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhc-----CCCHHHHH
Q 001392 739 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT-----RRTADEVR 813 (1088)
Q Consensus 739 ~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~-----~~~~~~~~ 813 (1088)
.....+ ..+....+..|..+ +..+++.....++...-..-..|+.+.-++..+++......+.+. .-+++.+-
T Consensus 246 ~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 246 KLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred cccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHH
Confidence 111222 23334445555554 455677666665554333334566666666665555554433321 22344554
Q ss_pred HHHH-HHHHHHHHHHHHhhCC
Q 001392 814 STVA-ELENAVRVFSHLSAAS 833 (1088)
Q Consensus 814 ~a~~-~l~~A~~~f~~l~~~~ 833 (1088)
..++ ..+++...+..+...|
T Consensus 324 ~~l~ls~~evE~~L~~lI~dg 344 (394)
T 3txn_A 324 ESIQLPMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHCcCHHHHHHHHHHHHHCC
Confidence 4421 2345556666665544
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.23 E-value=0.019 Score=69.56 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=91.4
Q ss_pred hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc----CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHH
Q 001392 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703 (1088)
Q Consensus 628 ~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~ 703 (1088)
..++.+|.+. |+.. |+.++|..+|..+... -..|+.+|+.|...|++.|++++|..+|.++.+
T Consensus 127 ~~TynaLIdg-lcK~------------G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKC-CLLT------------DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4567788888 9999 9999999999876542 234899999999999999999999999999998
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHccC-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 704 AASGSVFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 704 ~~p~~~~~~~~~~~~~la~~~~~~g~-~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
.+- ..+..+|..+..++++.|+ .++|..+|+.+.... -.+|..++..+
T Consensus 194 ~G~----~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~~l 242 (1134)
T 3spa_A 194 AGL----TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAVL 242 (1134)
T ss_dssp TTC----CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHHSC
T ss_pred cCC----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcccc
Confidence 763 1368899999999999998 478999999999874 45665555544
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.04 E-value=1.3 Score=52.99 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLA---KGEVEQASSAFKIVLEA--------DRDN----------VPALLGQ 168 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~---~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~l 168 (1088)
++.|+.+|+++...+|.... ++..+.+... ..+--+|+..+...++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 34688888888888875433 2222322221 12345566666666532 1222 2356667
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+..+..+|+|+-|+.+.++++...|.. -..|+.++.||..+|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 778888899999999999999999988 778899999999999999998777654
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.88 E-value=0.1 Score=48.08 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1088)
|..+..-+.++.+++..|.|..|+-.+.. -+.+.+.+..+.|+...++|..|+..++.++.
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55557778888999999999988876642 34577888889999999999999999999984
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.81 E-value=2.3 Score=49.93 Aligned_cols=142 Identities=8% Similarity=-0.047 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHh
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1088)
..+.-|..-++.|++..+..+...+-+-... ..+.+..+..+... .....+...+
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~--------------~yl~y~~l~~~l~~-----------~~~~ev~~Fl 62 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGLKDYPLY--------------PYLEYRQITDDLMN-----------QPAVTVTNFV 62 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGGTTSTTH--------------HHHHHHHHHHTGGG-----------CCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCcH--------------HHHHHHHHHhCccc-----------CCHHHHHHHH
Confidence 4567778888999999998887765322111 11222222211111 0111344456
Q ss_pred hcCCCChhhHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 122 RIDMHEPSTWVGKGQL---LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~---~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
...|+.|..-..+... +...+++..-+.+|.. .|.+...-...+......|+-.+|......+....... +.
T Consensus 63 ~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p~ 137 (618)
T 1qsa_A 63 RANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-PN 137 (618)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-CT
T ss_pred HHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-cH
Confidence 6678887665444432 3346677766664443 37788777778888889999888888888777655444 33
Q ss_pred HHHHHHHHHHHcCCH
Q 001392 199 IRLGIGLCRYKLGQL 213 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~ 213 (1088)
.+-.+-..+...|.+
T Consensus 138 ~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCC
Confidence 334444444444433
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.68 E-value=1.3 Score=40.88 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh--------------
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-------------- 371 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------------- 371 (1088)
+.-..++.+++-.|.|..++-.+. .-+...+.+.-+.||...++|..|+.+++.++.-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~--------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH--------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH--------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 444556666667777777665553 2344555666677777777777777777777731
Q ss_pred ---CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 372 ---YPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1088)
Q Consensus 372 ---~p~~~~-~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~ 412 (1088)
+|.+-+ .+..+|.++.+.|+.++|+.+|.......|-.+.+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 233333 56677888888899999999998888887754433
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.43 Score=53.82 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH----
Q 001392 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA---- 750 (1088)
Q Consensus 675 ~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~---- 750 (1088)
..+...+|..|...|+++.|.++|.+++....++. ...++++.+..+++..+++..+...+.++.......+++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34677899999999999999999999999876543 457889999999999999999999999998877666663
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
.+..+.|.++...++|..|...|..++.-....
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 344566778888999999999998888765544
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.28 Score=58.67 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=50.5
Q ss_pred hhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 679 ~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
..-+..+..+|+++-|+.+.++++...| ..-..|+.|+.||..+|+|+.|+-.+..|
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-----seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELAL-----DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3346667788999999999999999998 78999999999999999999999886665
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.79 E-value=19 Score=42.23 Aligned_cols=410 Identities=9% Similarity=-0.044 Sum_probs=208.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH--HHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL--GIGLC 206 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~--~lg~~ 206 (1088)
...+..+...+..|++..+......+ ...|- ..+.....+....+.. .-.-+...+..+|+.+..-.+ ..-..
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 34566777888888887766654432 22333 2233333322222221 122555566778887433222 22233
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+.+.+++..-+.+|.. .|.+....+..+......|+ ...|......+.......+..+..+...+...|....
T Consensus 82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~---~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQ---SEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 4445666655554443 36777777777777777787 6667777777666655556566555555555444332
Q ss_pred H--HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------cCCCCCchhhHhhHHHHHHHc
Q 001392 287 V--EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE---------INKPHEFIFPYYGLGQVQLKL 355 (1088)
Q Consensus 287 A--~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~~~~~~~~~~~~la~~~~~~ 355 (1088)
. ..-+..++... .. .....++... . .....-...+..+... .............++......
T Consensus 155 ~~~~~R~~~al~~~--~~---~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 155 LAYLERIRLAMKAG--NT---GLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp HHHHHHHHHHHHTT--CH---HHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CH---HHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh
Confidence 1 11112222100 00 0000000000 0 0000000001111100 000011111223334444555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 001392 356 GDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~ 431 (1088)
.+.+.|...+.......+-+.. .+..++.-+...+...++...+.+.....+++..........+..+++..|...
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 6889999999887654433332 222233333334435677777777665444443333333444477999999998
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001392 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (1088)
Q Consensus 432 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1088)
|..+..... ......+-+|..+...|+..+|..+|..+..... +...+....+..--.+
T Consensus 308 ~~~l~~~~~-----~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~----------------fYg~lAa~~Lg~~~~~ 366 (618)
T 1qsa_A 308 LARLPMEAK-----EKDEWRYWQADLLLERGREAEAKEILHQLMQQRG----------------FYPMVAAQRIGEEYEL 366 (618)
T ss_dssp HHHSCTTGG-----GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS----------------HHHHHHHHHTTCCCCC
T ss_pred HHHcccccc-----ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------------hHHHHHHHHcCCCCCC
Confidence 876543211 2367788899999999999999999999876311 1111111000000000
Q ss_pred ccCCCCcCCCCc---chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 512 ENDGNHVELPWN---KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 512 ~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
. ......... ........+..+...|....|...+..++... .......++.+....|.+..++...
T Consensus 367 ~--~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 367 K--IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp C--CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0 000000000 11123455677888899999988887776542 2344556777777888887776444
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.65 E-value=4.4 Score=49.83 Aligned_cols=191 Identities=18% Similarity=0.100 Sum_probs=104.3
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 135 GQLLLAKGEVEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
....+..+++++|.. ++.. -| +...+...+..+...|.++.|+...+ + +...+ .....+|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~-~~~~f---~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------D-QDQKF---ELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------C-HHHHH---HHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------C-cchhe---ehhhhcCCH
Confidence 344556788888876 4411 11 01222555566677788888776552 2 22223 334667888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1088)
+.|.+..+ ..++...|..+|..++..++ ++.|..+|.++-. . ..+..++...|+.+.
T Consensus 669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~~---~~~A~~~y~~~~d-----~---~~l~~l~~~~~~~~~------- 725 (814)
T 3mkq_A 669 TLARDLLT-----DESAEMKWRALGDASLQRFN---FKLAIEAFTNAHD-----L---ESLFLLHSSFNNKEG------- 725 (814)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTC-----H---HHHHHHHHHTTCHHH-------
T ss_pred HHHHHHHH-----hhCcHhHHHHHHHHHHHcCC---HHHHHHHHHHccC-----h---hhhHHHHHHcCCHHH-------
Confidence 88887753 33567888888988888888 8888888776421 1 112222333343333
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
+..++......|++..|...|.+.-. +.....+|...+++++|+.+.+. ..|
T Consensus 726 --------------~~~~~~~a~~~~~~~~A~~~~~~~g~-----------~~~a~~~~~~~~~~~~A~~lA~~---~~~ 777 (814)
T 3mkq_A 726 --------------LVTLAKDAETTGKFNLAFNAYWIAGD-----------IQGAKDLLIKSQRFSEAAFLGST---YGL 777 (814)
T ss_dssp --------------HHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH---TTC
T ss_pred --------------HHHHHHHHHHcCchHHHHHHHHHcCC-----------HHHHHHHHHHcCChHHHHHHHHH---hCC
Confidence 33344444445555555554433210 22233455566667777666554 344
Q ss_pred Cc---HHHHHHHHHHHHhcCCHH
Q 001392 374 DN---CETLKALGHIYVQLGQIE 393 (1088)
Q Consensus 374 ~~---~~~~~~la~~~~~~g~~~ 393 (1088)
.. ..+....+.-+...|+..
T Consensus 778 ~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 778 GDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ChHHHHHHHHHHHHHHHhccchh
Confidence 33 234444455555556543
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=3.3 Score=46.63 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC--
Q 001392 377 ETLKALGHIYVQLGQIEKAQELLRKAAKID--PRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-- 447 (1088)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~----~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 447 (1088)
.+...|+.+|...|++.+|..++..+..-. ..+ ...++....++ ..+++.+|..++.++.........+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 455677888888888888888888775321 111 45666677777 888999998888887654333222211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
..++...|.++...++|.+|..+|..+...
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356677899999999999999999998863
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.57 E-value=9.3 Score=42.95 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=78.2
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHH---HCCCChh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALK---VNGKYPN 594 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~---~~p~~~~ 594 (1088)
...+...|+.+|...|++.+|..++..+....-. -.+.++....++...+++..|..++.++.. ..+..+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4567788999999999999999999988653211 267888888999999999999999998743 2333333
Q ss_pred ----HHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 595 ----ALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.+...|.++...++|.+|-..|..+...
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5567888899999999999999887653
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.22 E-value=4.1 Score=50.13 Aligned_cols=130 Identities=20% Similarity=0.125 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001392 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1088)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1088)
..++..+...|.++.|+...+... .. .......|+++.|.++... .++...|..+|..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-----------QK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-----------HH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc-----------hh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHH
Confidence 556666777788777775542111 11 2345677888888877533 3567888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001392 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467 (1088)
Q Consensus 389 ~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (1088)
.++++.|..+|.++- +.. .+..++ ..++.+......+.+.. .+ -+.....++...|++++|
T Consensus 694 ~~~~~~A~~~y~~~~-----d~~---~l~~l~~~~~~~~~~~~~~~~a~~----~~------~~~~A~~~~~~~g~~~~a 755 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAH-----DLE---SLFLLHSSFNNKEGLVTLAKDAET----TG------KFNLAFNAYWIAGDIQGA 755 (814)
T ss_dssp TTCHHHHHHHHHHHT-----CHH---HHHHHHHHTTCHHHHHHHHHHHHH----TT------CHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHcc-----Chh---hhHHHHHHcCCHHHHHHHHHHHHH----cC------chHHHHHHHHHcCCHHHH
Confidence 888888888888762 222 233333 34444443322222211 11 011123345567777777
Q ss_pred HHHHHHHH
Q 001392 468 HQSFKDAL 475 (1088)
Q Consensus 468 ~~~l~~al 475 (1088)
+++|.++-
T Consensus 756 ~~~~~~~~ 763 (814)
T 3mkq_A 756 KDLLIKSQ 763 (814)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77776543
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.75 Score=51.79 Aligned_cols=121 Identities=11% Similarity=0.116 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---NVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
..+.+.+..+.+-......-..++..+|..|+..|+++.|.++|.++...... -...++....+++..++|..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44445554444422233345568899999999999999999999998775432 367888888999999999999999
Q ss_pred HHHHHHhCC---CC--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 185 YKRALQVHP---SC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 185 ~~~al~~~p---~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+.++..... +. ...+....|..++..++|..|...|-.++....
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 999866532 11 223445567777888999999888888776543
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.19 E-value=1.1 Score=45.71 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
+.+.+..|+..+...++.+|.++.....+..+++-.|+|++|...++.+.+++|.....-..+-.+ -.|...=
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~~R 81 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQAR 81 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHHHH
Confidence 345566999999999999999999999999999999999999999999999999764432111110 0111111
Q ss_pred HHHHHh--CC---CChhH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 186 KRALQV--HP---SCPGA--IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 186 ~~al~~--~p---~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
..++.- .| ..++. ..+.-+......|+.++|...-..+++.-|..
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 222221 12 22122 23445666667899999999999999887754
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.14 E-value=2.3 Score=43.23 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.++..|++++|+..+...++.+|.|......+..+++-.|+++.|+.-++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34566777777777777777777777777777777777777777777777777777766
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.90 E-value=18 Score=38.24 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh-HHHHHHHHHHHHHHHHHhchhhh----------------hh
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RYERIAILNALGVYYTYLGKIET----------------KQ 103 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~----------------~~ 103 (1088)
+.+-+++.=|.++++|++|+.+|-.+... ++... ...-..+-..|..+|...+.... ..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~----ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQT----LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH----HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 35667788899999999999998885321 11110 00112223334455554432211 01
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
..|......|+.+-.+.-...-.+|..+..+|..|+..|++.+|...|- +..+ +.+..+..+-.-++..+
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~~~------- 181 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYKQD------- 181 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHHTS-------
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHHhc-------
Confidence 1234444555555444222223466677777777777777777766662 1111 11122221111111111
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCC------------------CCHHH-HHHHHHH
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ----LDP------------------ENVEA-LVALAVM 240 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p------------------~~~~a-~~~la~~ 240 (1088)
.|.............|..+++...|..+|...++ .+| ..+.. +..+..+
T Consensus 182 --------~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLll 253 (336)
T 3lpz_A 182 --------ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLL 253 (336)
T ss_dssp --------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHH
T ss_pred --------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHH
Confidence 2333222223344566778888888876655443 222 22221 2222333
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFT 281 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~ 281 (1088)
.+..+....+..-...|...++.+| .....+..+|..||..
T Consensus 254 t~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 254 SVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 3344444446666667777777777 6777777788887754
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.58 E-value=3.1 Score=39.60 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~ 402 (1088)
+..|+++.|.+..+.+ ++...|..||......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4556666665555443 34556666666666666666666666554
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.32 E-value=6.4 Score=37.38 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=27.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
...|+++.|..+.+.+ ++ ...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----ND-SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CC-HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4566666666665543 22 455666666666666666666666654
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.29 E-value=0.62 Score=52.45 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHh-----------cCCCCHHHHhhHHHHHHhcCCchHHHH----------HHHHHHHHh-cCCCCCC
Q 001392 655 THLEKAKELYTRVIV-----------QHTSNLYAANGAGVVLAEKGQFDVSKD----------LFTQVQEAA-SGSVFVQ 712 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~-----------~~p~~~~a~~~la~~l~~~g~~~~A~~----------~~~~~~~~~-p~~~~~~ 712 (1088)
+++++|..+-..++. +++-+.-.|+.++.++...|+...... .+-.+.... .......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 777777776655441 123344455666666666676654322 222222222 1111112
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~--~~---~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
...++..+-..|+..+.|+.|..+..++. ||.+ ++ ...++++|+++.-.++|.+|.++|..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35567777889999999999999988773 5533 22 56678999999999999999999999999998764
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.43 E-value=20 Score=45.83 Aligned_cols=168 Identities=11% Similarity=0.002 Sum_probs=91.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhc
Q 001392 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD-PENVEALVALAVMDLQAN 245 (1088)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~ 245 (1088)
.+...+...+.++-+.. .+...|.+ +...+.+|.++...|++++|..+|.++-.-- +.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~-~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-----------S
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-----------h
Confidence 34445666666655543 33455666 3446778888888888888888887763211 110000 0
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc--hHHHHHHHHHHHhcCCHHH
Q 001392 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK--SHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~~~~la~~~~~~g~~~~ 323 (1088)
. .. ....+..........+..+.++..++...+.++.++.+...++......... ...|..+-..+...|+|++
T Consensus 881 ~---~~-~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 V---LR-EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp S---HH-HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred h---hc-ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0 00 0000000011122234566677777888888888888888888765433321 2356667777777888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCH
Q 001392 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1088)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1088)
|...+...-. .......+..+...++..|..
T Consensus 957 Ay~aL~~~pd----~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 957 AHVALMVLST----TPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGHHHHHHHH----SSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhCCC----HHHHHHHHHHHHHHHHhCCCh
Confidence 8776654432 223333444454555555443
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.20 E-value=3.5 Score=45.56 Aligned_cols=89 Identities=25% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV----------------------PALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.|......|+...|...+..++......+ .++..++..+...|++.+|+..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444556788888888888877642211 12223334444455555555555555555
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+|-+ ..++..+..+++..|+..+|+..|.++
T Consensus 201 ~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 201 HPYR-EPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp STTC-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544 344444555555555555555544443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.03 E-value=12 Score=47.92 Aligned_cols=144 Identities=9% Similarity=-0.043 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH-------------------- 192 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-------------------- 192 (1088)
.+...+...|.++-|.. .+...|.++...+.+|.+++..|++++|..+|+++-..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34555667777766554 345678888888999999999999999999998763210
Q ss_pred C--CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH----HHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 193 P--SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVE----ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 193 p--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~----a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
+ ...+..|+.+..++.+.|.++.++..-..|++..+. +.. .|..+-..++..++ |++|...+...-. ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~~pd-~~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMVLST-TP 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHHHHH-SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHhCCC-HH
Confidence 1 112344666777888888888888888888876543 322 34555556666666 6666655543321 12
Q ss_pred CCHHHHHHHHHHHHhcCCH
Q 001392 266 YCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~ 284 (1088)
.....+..|....+..|..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 2344455555555555544
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.57 E-value=14 Score=40.66 Aligned_cols=124 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001392 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1088)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1088)
|......|+...|...+..++.....++ ..... ...+-. ....++.. ...+...++..+...|
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~-L~~~~---------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g 185 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPV-LDDLR---------DFQFVEPFATALVED------KVLAHTAKAEAEIACG 185 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSST-TGGGT---------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCC-CCCCC---------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCC
Confidence 4444557899999999999987543221 11110 011111 11112211 1235566778888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-CCCCCHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GEEVPIEVL 451 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~ 451 (1088)
++.+|+..+..++..+|-+..++..+..++ ..|+..+|+..|..+...+... +..+.+.+.
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 999999999999999999999999999998 9999999999999998876543 544444443
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.47 E-value=4.5 Score=45.59 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKP----HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
..+..+-+.|...+.|++|..+..++. ++.. ...+.-++.+|.++.-.++|.+|..++..++...|
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 334444445555555555555554442 1100 01122244455555555555555555555555444
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=83.96 E-value=3.8 Score=46.52 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
.+..+|.+......+..|..+|.++..+.|++...++.||.+....|+.-.|+-+|-+++......+.+..+|..++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 35567777777777788888888888888888888888888888888888888888888877666777777777766
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=83.16 E-value=4.9 Score=45.63 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
.+..+|.+......+..|..+|.+++.+.|.+ ..++..+|.+....|+.-.|+-+|.+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 56677777777777788888888888888877 67778888888878888888888888777666677777777766654
Q ss_pred h
Q 001392 244 A 244 (1088)
Q Consensus 244 ~ 244 (1088)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.46 E-value=65 Score=33.77 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh-HHHHHHHHHHHHHHHHHhchhhhh----------------h
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RYERIAILNALGVYYTYLGKIETK----------------Q 103 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~~----------------~ 103 (1088)
+.+-+++.=|.+++++++|+.+|..+... ++... ...-..+-..+..+|...+..... .
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~----ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~ 109 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALS----FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSE 109 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC
Confidence 46777888899999999999998886321 01100 001122223344555444332210 0
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~ 152 (1088)
..|......|+.+-.+.-...-.+|..+..+|..|...|++.+|...|-
T Consensus 110 ~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 110 PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1233344444444433322222456666666666666666666666553
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.89 E-value=75 Score=33.59 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH-hc
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFIDLGELL-IS 422 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~-----~p~~~~~~~~la~l~-~~ 422 (1088)
+.=|.+.++|++|++++-... ..+.+.|+...|..+..-+++. -|-+......+..++ ..
T Consensus 42 ~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 344677788888887655432 2333344444443333222211 123344444555555 22
Q ss_pred CC-HHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 423 SD-TGAALDAFKTARTLLKKAG--EEVPIEVLNNIGVIHFEKGEFESAHQSF 471 (1088)
Q Consensus 423 ~~-~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~l 471 (1088)
.. -..-..+..+++....+.+ ...++.++..+|..++..+++.+|..+|
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 21 1223556677777766643 3456899999999999999999999998
No 266
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.56 E-value=0.001 Score=72.73 Aligned_cols=268 Identities=13% Similarity=0.094 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
.+..|..+|.+++..+...+|+..|-++ .+|.+ +........+.|.++.-+.++.-+-+. -..+..=..|..+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~----y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS----YMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCS----SSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHH----HHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 4556666666666666666666655332 22332 334444555556666555555544332 1122222233344
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1088)
|.+.++...+++ .+ ..|+. .-....|.-++..|.|+.|.-+|..+. -|..|+.++..+|+
T Consensus 126 yAk~~rL~elEe-------fl-~~~N~-A~iq~VGDrcf~e~lYeAAKilys~is-----------N~akLAstLV~L~~ 185 (624)
T 3lvg_A 126 LAKTNRLAELEE-------FI-NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGE 185 (624)
T ss_dssp HHTSCSSSTTTS-------TT-SCCSS-SCTHHHHHHHHHSCCSTTSSTTGGGSC-----------CCTTTSSSSSSCSG
T ss_pred HHhhCcHHHHHH-------HH-cCCCc-ccHHHHHHHHHHccCHHHHHHHHHhCc-----------cHHHHHHHHHHHHH
Confidence 444443111000 00 01221 122334555555555544444333221 12234445555555
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
|..|+..-++ .+++.+|-.....+...+.+.-|..+--.++- +|+. +-.+...|...|.+++-+.+++
T Consensus 186 yq~AVdaArK--------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 186 YQAAVDGARK--------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp GGSSTTTTTT--------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHH
Confidence 5555544332 23344566666666666666666555544442 2222 1223445667799999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 001392 401 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE------VPIEVLNNIGVIHFEKGEFESAHQS 470 (1088)
Q Consensus 401 k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (1088)
..+.+...+...+..||.+|..-.+++-.+.++.... +.+.+ .....|..+..+|..-.+++.|...
T Consensus 254 aglglErAHmGmFTELaILYsKY~PeKlmEHlklf~s---riNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 254 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSS---SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 9999988999999999999966667666655543211 00000 0135677788888888898877543
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.55 E-value=60 Score=29.12 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHH--HHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001392 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI--LNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1088)
Q Consensus 43 ~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1088)
-++-|....-.|.+++.++++.+...+.+-.-|.=...+-+.. -..+...+-..|+.- .-.+-+++...+.+|-+.
T Consensus 10 kLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF--Dis~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 10 KLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYF--DLDKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS--CGGGCSCTHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhc--CcHhhhcHHHHHHHHHHh
Confidence 3566788899999999999999876543211110000000000 001112222233322 012334445666666655
Q ss_pred hhcCCCChhhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 121 SRIDMHEPSTWVGKG-QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
-.. . -++.+| ..+..+|+-++-.+.+..++...+-++..++.+|.+|.+.|+..+|-.++.++.+..
T Consensus 88 n~~----s-e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 88 NTL----N-EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp TCC----C-HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cch----H-HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 321 1 244444 455677888877777777767677778888888888888888888888888877654
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.84 E-value=39 Score=30.25 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=57.4
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHH-HHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Q 001392 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 765 (1088)
Q Consensus 687 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la-~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~ 765 (1088)
..|++..-+..|-++ ....-|+.+| .++..+|+-++=-+.+...+.. .++++.+++.+|.+|.+.|+
T Consensus 73 ~C~NlKrVi~C~~~~----------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~ 140 (172)
T 1wy6_A 73 KCQNLKSVVECGVIN----------NTLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGD 140 (172)
T ss_dssp GCSCTHHHHHHHHHT----------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTC
T ss_pred hhhcHHHHHHHHHHh----------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcc
Confidence 345666666555444 1122344554 5566788887777776665443 56779999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 001392 766 WQDCKKSLLRAIHLA 780 (1088)
Q Consensus 766 ~~~A~~~l~~al~~~ 780 (1088)
..+|-+.+.+|-+..
T Consensus 141 ~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 141 ERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhh
Confidence 999999999887754
No 269
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=60.33 E-value=2.7 Score=31.69 Aligned_cols=17 Identities=53% Similarity=0.710 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCCCCCch
Q 001392 1021 AGLEDSDVDDEMAPSIT 1037 (1088)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~ 1037 (1088)
-||.|||+||+..|+-+
T Consensus 3 YGL~DSDEEEe~~P~d~ 19 (64)
T 1ko6_B 3 YGLQDSDEEEEEHPSKT 19 (64)
T ss_pred cCccccchhhhcCCCcc
Confidence 59999999988767655
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=59.85 E-value=0.00069 Score=74.12 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=125.7
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
..-+.+.+|..+|.++...+...+|+..|-+ .+++..|.....+....|.+++-+.++..+.+. -..+.+-..|
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteL 122 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETEL 122 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHH
Confidence 3445778999999999999999999987754 234445666677777889999999888877654 3445566677
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHh
Q 001392 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 679 (1088)
..+|.+.++..+ ++..+... +..-....|+- ++.. |.|+.|.-+|..+ .-+.
T Consensus 123 i~ayAk~~rL~e----lEefl~~~---N~A~iq~VGDr-cf~e------------~lYeAAKilys~i--------sN~a 174 (624)
T 3lvg_A 123 IFALAKTNRLAE----LEEFINGP---NNAHIQQVGDR-CYDE------------KMYDAAKLLYNNV--------SNFG 174 (624)
T ss_dssp HHHHHTSCSSST----TTSTTSCC---SSSCTHHHHHH-HHHS------------CCSTTSSTTGGGS--------CCCT
T ss_pred HHHHHhhCcHHH----HHHHHcCC---CcccHHHHHHH-HHHc------------cCHHHHHHHHHhC--------ccHH
Confidence 777777777543 22222221 11122335555 5554 5555554444321 1233
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 759 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~ 759 (1088)
.|+.++.+.|+|..|.+..+++ +++.+|-.....+...+.|.-|...--..+-. +. -+--|...
T Consensus 175 kLAstLV~L~~yq~AVdaArKA----------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad---eL~elv~~ 238 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD---ELEELINY 238 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTTC----------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS---CCSGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH---HHHHHHHH
Confidence 4566666666666666554444 34455555555555555554444432222221 00 01112233
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 760 HYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 760 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
|...|.+++=+..++.++.+..-+..+.--||++|.|+
T Consensus 239 YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 239 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp SSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 44445555555555555544444444444455544433
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.25 E-value=66 Score=37.71 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=46.6
Q ss_pred HHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 148 SSAFKIVL-EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 148 ~~~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
+.-++..+ +..|....+ ....+++-.|+|+.|+.++-+. .....+++.++..+ .|-+.. -...+..
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~--~gLL~~----~~~lls~ 347 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLAS--LKLFKI----DSSTRLT 347 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHH--TTC--------------
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHH--cCCccC----CCccccc
Confidence 45555554 344444444 4566778899999999988754 22245566666555 444332 2333333
Q ss_pred CCCCHHH-HHHHHHHHHhhchHHhHHHHHHHHHHH
Q 001392 227 DPENVEA-LVALAVMDLQANEAAGIRKGMEKMQRA 260 (1088)
Q Consensus 227 ~p~~~~a-~~~la~~~~~~~~~~~~~~Al~~~~~a 260 (1088)
+|+.+.. +..|...|.+.=...+...|+.+|--+
T Consensus 348 ~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 348 KKPKRDIRFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp -------CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred CCCcccccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3332211 222222333322223377888777655
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=48.11 E-value=18 Score=40.30 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHccCHHHHHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCC
Q 001392 722 HVYFAQGNFALAMKMYQNCLR--------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL-APSN 783 (1088)
Q Consensus 722 ~~~~~~g~~~~Ai~~~~~al~--------~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~-~p~~ 783 (1088)
.+|++.|+..-+..++..+-. .|+...-+..+|++|+.+...++|.+|.+.|..|+.. .|.+
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 455555555555555443322 1222222667889999999999999999999999988 7765
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.17 E-value=1.8e+02 Score=36.07 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=32.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
+...+...|.++-|.. .+...|.++..-+.+|++++..|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455555666654332 334556666666777777777777777777776653
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.11 E-value=36 Score=42.38 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=41.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
+...+...|.++-|.+ .+...|.++..-+.+|.+|...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5566677777765443 456678888888999999999999999999998864
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.32 E-value=2.2e+02 Score=27.47 Aligned_cols=52 Identities=12% Similarity=0.159 Sum_probs=34.9
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 689 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 689 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
++...+..+|.-+....-|. ..+..|...|..+...|++.+|..+|+..++.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGT---KLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33557777777776665433 45666667777777777777777777777765
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=44.18 E-value=1.4e+02 Score=25.02 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHH
Q 001392 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (1088)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 221 (1088)
...++|..+-+- +...+....+-+.+...+.++|+|++|+.+.+ |.+.+++--.++.|-+++|-..++...+.
T Consensus 21 H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~------~~c~pdlepw~ALce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEW-LHLKGEEEAVQLIRLSSLMNRGDYASALQQGN------KLAYPDLEPWLALCEYRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHT------TSCCGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcC------CCCCchHHHHHHHHHHhcccHHHHHHHHH
Confidence 356777665544 34455544555667778999999999988764 33346666678999999999998887775
Q ss_pred HH
Q 001392 222 RA 223 (1088)
Q Consensus 222 ~a 223 (1088)
+.
T Consensus 94 ~l 95 (116)
T 2p58_C 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=43.11 E-value=1.5e+02 Score=24.89 Aligned_cols=75 Identities=23% Similarity=0.206 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHH
Q 001392 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (1088)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 221 (1088)
...++|..+-+- +...+....+-+.+...+.++|+|++|+.+.+ |.+.+++--.++.|-+++|-.+++...+.
T Consensus 20 H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~------~~c~pdlepw~ALce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEW-LERLGQDEAARLIRISSLANQGRYQEALAFAH------GNPWPALEPWFALCEWHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGT------TCCCGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcC------CCCCchHHHHHHHHHHhcccHHHHHHHHH
Confidence 346777665544 34455544455667778899999999987653 44446666778999999999998888775
Q ss_pred HH
Q 001392 222 RA 223 (1088)
Q Consensus 222 ~a 223 (1088)
+.
T Consensus 93 ~l 94 (115)
T 2uwj_G 93 GL 94 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 278
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=41.97 E-value=1.1e+02 Score=33.25 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=38.0
Q ss_pred hhHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 001392 784 YTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 832 (1088)
Q Consensus 784 ~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~ 832 (1088)
..+.||+|.++...+.........+.+.+..+..-+..|-.+|..|...
T Consensus 114 a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~ 162 (376)
T 3r9m_A 114 ISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKES 162 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888777776554334456678999999999999999999764
No 279
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=41.28 E-value=4.9e+02 Score=30.39 Aligned_cols=77 Identities=14% Similarity=-0.004 Sum_probs=36.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---H---
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL---L--- 420 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l---~--- 420 (1088)
....+++-.|+|+.|+.++-+. + ....++..++..+ .|-+.. -..++..+|..+ .++++.+ |
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~---~-~vdAVH~AIaL~~--~gLL~~----~~~lls~~~~~~--~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF---S-EMDAVHLAIGLAS--LKLFKI----DSSTRLTKKPKR--DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT---C-HHHHHHHHHHHHH--TTC-----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc---C-chhHHHHHHHHHH--cCCccC----CCcccccCCCcc--cccHHHHHHHHHHH
Confidence 4678888999999999988754 1 1122444444433 444332 223333333322 3333332 2
Q ss_pred -hcCCHHHHHHHHHHH
Q 001392 421 -ISSDTGAALDAFKTA 435 (1088)
Q Consensus 421 -~~~~~~~A~~~~~~a 435 (1088)
...+...|+.+|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 566788888877544
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=40.13 E-value=38 Score=27.49 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=12.2
Q ss_pred HccCHHHHHHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~ 743 (1088)
..|+|.+|+.+|..++..
T Consensus 31 ~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 457777777777766664
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=39.09 E-value=40 Score=27.37 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=12.9
Q ss_pred HccCHHHHHHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~ 743 (1088)
..|+|.+|+.+|..++..
T Consensus 23 ~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 457777887777777665
No 282
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=38.01 E-value=3.3e+02 Score=27.43 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHc---CC-cHHHHHHHHHHH
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKY---QD-YVDAYLRLAAIA 569 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~-~~~~~~~la~~~ 569 (1088)
.-+..++.+..+.++|++...+++++...+ +. ..+-...|..+|
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 344455666666666666666666666644 32 233444444444
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=37.99 E-value=28 Score=34.03 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 750 ~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
+..+|++|+.+...++|.+|...|..|+...|.+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4555666666666666666666666666666644
No 284
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=37.92 E-value=2.8e+02 Score=29.20 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=54.1
Q ss_pred hhHHHHHHhcC---CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHH---HHhcCCCCHHH
Q 001392 679 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQI 752 (1088)
Q Consensus 679 ~~la~~l~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al---~~~~~~~~~~~ 752 (1088)
..|-+++...| +|.-|+..+-..-+..|.+..+. ++.+|.+++ +.+..+..+--
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~--------------------~l~L~~~AI~sa~~yY~n~HvYP 298 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPP--------------------AEELFKEAITVAKREYSDHHIYP 298 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCC--------------------HHHHHHHHHHHHHHHSTTCCSHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCC--------------------HHHHHHHHHHHHHHHhccCCccc
Confidence 55667777665 56678877777777776543221 333333333 33445666777
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 753 LLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 753 l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
+.++|-.+|+.+++.+|+..+-.+-.+
T Consensus 299 YtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 299 YTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 788888999999999999888766654
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.57 E-value=1.2e+02 Score=28.00 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH---HHHHHHHcCChHHHHHHHHHHHHh
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDN------VPALLG---QACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~---la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
-+..|..++..|+|=+|-..|+.+....+.. ...++. .|...++.|+...|..++.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556778888899999999999888776543 122222 233345567777788777777663
No 286
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=34.85 E-value=3.1e+02 Score=29.44 Aligned_cols=81 Identities=11% Similarity=0.240 Sum_probs=55.8
Q ss_pred hhHHHHHHhcC---CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHH---HHhcCCCCHHH
Q 001392 679 NGAGVVLAEKG---QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQI 752 (1088)
Q Consensus 679 ~~la~~l~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al---~~~~~~~~~~~ 752 (1088)
..|-+++...| +|.-|+.-+-..-+..|.+.-+. ++.+|.+++ +.+..+..+--
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~--------------------~~~L~~~AI~sa~~~Y~n~HvYP 320 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPD--------------------PLTLYHKGIASAKTYYRDEHIYP 320 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCC--------------------HHHHHHHHHHHHHHHSTTCCSHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCC--------------------HHHHHHHHHHHHHHHhccCCccc
Confidence 56677777666 56778888888888877542221 333343333 34455666777
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 753 LLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 753 l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
|.++|-.+|+.+++.+|+..+-.+-.+
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHHHHH
Confidence 888999999999999999988766554
No 287
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=34.82 E-value=1.3e+02 Score=22.01 Aligned_cols=12 Identities=58% Similarity=0.781 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 001392 886 AEEARRKAEEQK 897 (1088)
Q Consensus 886 ~~~~~~~~~~~~ 897 (1088)
.+++.+++|+++
T Consensus 17 ~~eAlrq~Ee~R 28 (63)
T 3rk3_E 17 AQEALRQAEEER 28 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455554444
No 288
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=34.58 E-value=45 Score=27.05 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=5.7
Q ss_pred HcCCHHHHHHHHH
Q 001392 140 AKGEVEQASSAFK 152 (1088)
Q Consensus 140 ~~g~~~~A~~~~~ 152 (1088)
..|+|++|+.+|.
T Consensus 31 ~~g~y~eAl~lY~ 43 (83)
T 2w2u_A 31 KEGNAEEAITNYK 43 (83)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 4444444444443
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.34 E-value=3.2e+02 Score=26.27 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCC-CCCC---chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHH
Q 001392 696 DLFTQVQEAASGS-VFVQ---MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771 (1088)
Q Consensus 696 ~~~~~~~~~~p~~-~~~~---~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~ 771 (1088)
.++++++....+. .|.+ ...+|+.++..+ ..++...+..+|..+..+.-....+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5788888876442 2222 233455555544 2345779999999999885445557777788888999999999999
Q ss_pred HHHHHHHhCC
Q 001392 772 SLLRAIHLAP 781 (1088)
Q Consensus 772 ~l~~al~~~p 781 (1088)
+|+..++..-
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998654
No 290
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=34.01 E-value=92 Score=24.48 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
+.+|..++..|++++|...|-.++...|+-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 457777888888888888888887777653
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.54 E-value=2.3e+02 Score=26.35 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001392 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 731 ~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p 781 (1088)
..+..+|..+..+.-....+..|...|..+...|++.+|..+|+..++...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 347778888777643344467777777888888999999999998888653
No 292
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=33.38 E-value=94 Score=34.57 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcC--------C--CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID--------M--HEPSTWVGKGQLLLAKGEVEQASSAFK 152 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~--------p--~~~~~~~~~g~~~~~~g~~~~A~~~~~ 152 (1088)
+-+.+.|..+|+++++.. .+..+++..-... | .-+..++.+|..++.+++|.+|...|.
T Consensus 176 l~l~n~L~kiYFkl~~~~-----------lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~ 244 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQ-----------LCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFN 244 (455)
T ss_dssp HHHHHHHHHHHHHSSCCT-----------THHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHH
Confidence 445667788899999887 3444443322111 1 123567888999999999999999999
Q ss_pred HHHHh-CCCC
Q 001392 153 IVLEA-DRDN 161 (1088)
Q Consensus 153 ~al~~-~p~~ 161 (1088)
.|+.. .|.+
T Consensus 245 ~A~~~lcp~~ 254 (455)
T 3t5v_B 245 EAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHhcCCcc
Confidence 99888 6654
No 293
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.26 E-value=70 Score=34.20 Aligned_cols=122 Identities=12% Similarity=0.181 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHh
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1088)
.|+.+...+..+.+. -++..+-.+++++++.+. + .-+-..+.-.|-|+++..|... .|--|+-.+-.+-
T Consensus 219 SWLYl~G~~v~C~R~-MeVAa~VsaiNPsi~~~t-d-s~el~~LQq~LLWlLyd~GhL~--------rYPmALgnLgDLE 287 (550)
T 3u84_A 219 SWLYLKGSYMRCDRK-MEVAFMVCAINPSIDLHT-D-SLELLQLQQKLLWLLYDLGHLE--------RYPMALGNLADLE 287 (550)
T ss_dssp CGGGGGGCCEECCHH-HHHHHHHHTCCCBSSSSC-B-CHHHHHHHHHHHHHHHHTTTTT--------TCHHHHHHHHHHH
T ss_pred ceEEecCceEeechH-hHHHHHHHhcCCcccccc-c-HHHHHHHHHHHHHHHHhccchh--------hCchhhcchhhHh
Confidence 588887777777753 334444445666554321 1 1244455567788888888766 2445555555554
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
++.|..... .++.+|.+++.. ...++..|..+|-.+++.++|.+|+..+..+-
T Consensus 288 e~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 288 ELEPTPGRP---------------DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHSCCTTCC---------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 455432110 033444444322 23345556666666777777777776665543
No 294
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.18 E-value=48 Score=26.86 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=8.5
Q ss_pred HcCChHHHHHHHHHHH
Q 001392 174 NRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 174 ~~g~~~~Al~~~~~al 189 (1088)
+.|+|.+|+.+|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4555555555555443
No 295
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=32.54 E-value=17 Score=20.76 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=7.8
Q ss_pred CCCCchHHHHhhh
Q 001392 1032 MAPSITAARRRRA 1044 (1088)
Q Consensus 1032 ~~~~~~~~~~~~~ 1044 (1088)
+.-||.++||||-
T Consensus 6 gsrpsgaerrrrr 18 (26)
T 1g70_B 6 GSRPSGAERRRRR 18 (26)
T ss_pred CCCCchHHHHHHH
Confidence 3456677776653
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.51 E-value=1.4e+02 Score=31.15 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCC
Q 001392 44 LIIAREYFKQGKVEQFRQILEEGSS 68 (1088)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~ 68 (1088)
+..|-.++..|++.+|+..|..++.
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5568889999999999999998753
No 297
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=32.49 E-value=1.8e+02 Score=31.30 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=35.8
Q ss_pred hHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001392 785 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 785 ~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
.+.||+|.++...+.. ....+.+.+..+..-+..|-.+|..|...-
T Consensus 118 ~VLfNiaal~s~~a~~---~~r~~~~glK~A~~~fq~AAG~f~~l~~~~ 163 (363)
T 3rau_A 118 CILYNLGALHSMLGAM---DKRVSEEGMKVSCTHFQCAAGAFAYLREHF 163 (363)
T ss_dssp HHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888887666653 233466788999999999999999998763
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.99 E-value=3.2e+02 Score=26.83 Aligned_cols=86 Identities=5% Similarity=0.016 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 001392 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773 (1088)
Q Consensus 694 A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l 773 (1088)
=..++++++....+.....+..-|+.+-..|... ...+..+|..+..+.-....+..|...|..+...|++.+|..+|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777654321111111222222222221 24677788877776433444666667777778888888888888
Q ss_pred HHHHHhCC
Q 001392 774 LRAIHLAP 781 (1088)
Q Consensus 774 ~~al~~~p 781 (1088)
+..++..-
T Consensus 174 ~~Gi~~~A 181 (223)
T 4aez_C 174 QKGKRMKA 181 (223)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 88887653
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.62 E-value=2.1e+02 Score=28.03 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
.+.+..+|.-+....-|. ..+..|...|.++...|++.+|..+|+..++..-
T Consensus 130 ~~~p~~if~~L~~~~IG~---~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQ---ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CSCHHHHHHHHHHTTCST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHCCcch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 468889999998876544 5778889999999999999999999999999743
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.38 E-value=3.4e+02 Score=24.74 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 001392 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 774 (1088)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~ 774 (1088)
..++++++....+...-.+..-|+.+-..|...-.- +..+|..+..+.-....+..|..-|..+...|++.+|..+|+
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~d--p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD--LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC--HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCC--HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHhC
Q 001392 775 RAIHLA 780 (1088)
Q Consensus 775 ~al~~~ 780 (1088)
..++..
T Consensus 126 ~Gi~~~ 131 (152)
T 4a1g_A 126 RGIQNQ 131 (152)
T ss_dssp HHHHTT
T ss_pred HHHHcC
No 301
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=28.29 E-value=4.7e+02 Score=26.29 Aligned_cols=61 Identities=13% Similarity=-0.042 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHH-cCChHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD--RD-NVPALLGQACVEFN-RGRYSDSLEFYKRA 188 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~la~~~~~-~g~~~~Al~~~~~a 188 (1088)
-.-++.++.+.-+.++|++.+.++.++...+ +. +..-...+..+|-. .|....+...+..+
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissi 72 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSI 72 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3456678888888899999999999998876 43 33344444444332 24455555555543
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.95 E-value=2.1e+02 Score=26.51 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHH------HHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL------GIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~------~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
-+..+..+++.|+|=+|-+.++.+....+.. ....+. ..|...++.|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556677788888888888888887766543 222222 223344556777878877777766
No 303
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=26.73 E-value=4.9e+02 Score=25.95 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
++.+|.+.-+.++|++.+.+...++..++.-..--..+-.+.++. |....+...+..+.+........-...+..-|.
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr 86 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYR 86 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q ss_pred Hc-----------------------CCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH-
Q 001392 209 KL-----------------------GQLG--KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE- 262 (1088)
Q Consensus 209 ~~-----------------------g~~~--~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~- 262 (1088)
.. -.-. ++.-+|.++ -.+.+..++.+..........+.|...|+.|+.
T Consensus 87 ~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~Km------KGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~i 160 (248)
T 3uzd_A 87 EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKM------KGDYYRYLAEVATGEKRATVVESSEKAYSEAHEI 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHh------hhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q ss_pred ----hCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001392 263 ----IYPYCA----MALNYLANHFFFTGQHFLVEQLTETALA 296 (1088)
Q Consensus 263 ----~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1088)
+.|.+| .+++.-..+|--.++.+.|..+...++.
T Consensus 161 A~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 161 SKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 304
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=26.63 E-value=1.4e+02 Score=23.43 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
.+|..+...|++++|...|-+|+...|+-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34555555555555555555555555543
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.45 E-value=1.1e+02 Score=29.60 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
...+.+|..++..++|.+|...|..++...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 456777888888888888888888888777654
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.19 E-value=71 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=12.8
Q ss_pred HccCHHHHHHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~ 743 (1088)
..|+|.+|+.+|..++..
T Consensus 27 ~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 27 AESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 447788888877777665
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.20 E-value=3.9e+02 Score=24.71 Aligned_cols=50 Identities=20% Similarity=0.390 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
+.+..+|..+....-+. ..+..|...|.++-..|++.+|..+|+..++..
T Consensus 77 ~~p~~if~~L~~~~IG~---~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGV---SLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSST---TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcch---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 56888999998876543 678889999999999999999999999999974
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.10 E-value=4.8e+02 Score=25.31 Aligned_cols=133 Identities=12% Similarity=0.032 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh---cCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh---hhhhhhHHHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEE---GSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE---TKQREKEEHFILA 113 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~---a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~---~~~~~r~~~~~~A 113 (1088)
.++++.-+..+|+.|++.+|.++... ++....... . .....+.+.-.|.. ..-|..- .+...+.-=++.|
T Consensus 16 lDfyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~-~-~~~k~iri~QfLsR--I~eG~~LD~~Fd~~~~lTPLESA 91 (235)
T 3bu8_A 16 LKFYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKE-H-TVSRLLRVMQCLSR--IEEGENLDCSFDMEAELTPLESA 91 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCC-H-HHHHHHHHHHHHHH--HHTTTCTTEECSSSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhCccccc-c-cchhHHHHHHHHHH--HHcCCCCCcccCCCCCCChHHHH
Confidence 45778889999999999999876554 331111100 0 00011111111111 1122211 0011112234578
Q ss_pred HHHHHHHhhcCCCChh--------hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 114 TQYYNKASRIDMHEPS--------TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~--------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
+.+++.+-+-.+-... .-.....+++..|.|++|.+.|++....+|.+-.....+..+-....
T Consensus 92 l~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 92 INVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 8888877655542211 11223456778888999999998888877666656555555544433
No 309
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=24.26 E-value=2.7e+02 Score=30.02 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=32.9
Q ss_pred hHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 001392 785 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 832 (1088)
Q Consensus 785 ~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~ 832 (1088)
.+.||+|.++...+.. ....+.+.+..+..-+..|-.+|..|...
T Consensus 143 ~VLfNlgal~s~~A~~---~~r~~~eglK~A~~~fq~AAG~f~~l~~~ 187 (380)
T 3c3r_A 143 CVLFNCAALASQIAAE---QNLDNDEGLKIAAKHYQFASGAFLHIKET 187 (380)
T ss_dssp HHHHHHHHHHHHHHHT---SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888776666552 23334566889999999999999999765
No 310
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.13 E-value=1.1e+02 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=13.1
Q ss_pred HccCHHHHHHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~ 743 (1088)
..|+|.+|+.+|..++..
T Consensus 28 ~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 28 SESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 457788888887777765
No 311
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=23.93 E-value=5.6e+02 Score=25.72 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=39.7
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc--CC-cHHHHHHHHHHHHHc-CChHHHHHHHHH
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKY--QD-YVDAYLRLAAIAKAR-NNLQLSIELVNE 584 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~ 584 (1088)
-.-+..++.+..+.++|++...+++++...+ +. ...-...|..+|... |....+...+..
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3456678999999999999999999999977 54 345555555555332 333334444433
No 312
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.87 E-value=5.3e+02 Score=25.43 Aligned_cols=45 Identities=18% Similarity=0.000 Sum_probs=33.5
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHH
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAK 570 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~ 570 (1088)
.-+..++.+..+.+++++...+++++...++.. .+-...|..+|.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 445578889999999999999999999877653 444555555553
No 313
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=23.74 E-value=7.6e+02 Score=27.19 Aligned_cols=12 Identities=0% Similarity=-0.083 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 001392 844 KINTHVEYCKHL 855 (1088)
Q Consensus 844 ~~~~~~~~~~~~ 855 (1088)
-......|+...
T Consensus 365 FF~~~~~F~~~f 376 (457)
T 3obv_E 365 FFMDLHNFRNMF 376 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 314
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.60 E-value=89 Score=27.23 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=12.4
Q ss_pred HccCHHHHHHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~ 743 (1088)
..|+|.+|+.+|..++..
T Consensus 30 ~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 347777777777766654
No 315
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.06 E-value=1.1e+02 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=13.2
Q ss_pred HccCHHHHHHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~ 743 (1088)
..|+|.+|+.+|..++..
T Consensus 25 ~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 447788888887777765
No 316
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.97 E-value=3.9e+02 Score=27.82 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCC
Q 001392 44 LIIAREYFKQGKVEQFRQILEEGSS 68 (1088)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~ 68 (1088)
+..|-.++..|++.+|+..|..++.
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5668899999999999999998754
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.45 E-value=1e+02 Score=25.56 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=9.0
Q ss_pred HcCChHHHHHHHHHHH
Q 001392 174 NRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 174 ~~g~~~~Al~~~~~al 189 (1088)
..|+|.+|+.+|..++
T Consensus 27 ~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 27 AESRYQQALVCYQEGI 42 (93)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 4566666666555543
No 318
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=20.32 E-value=5.2e+02 Score=27.23 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhh
Q 001392 819 LENAVRVFSHLSA 831 (1088)
Q Consensus 819 l~~A~~~f~~l~~ 831 (1088)
+..+...|..+..
T Consensus 268 ~~~~~~~~~~l~~ 280 (340)
T 1v9d_A 268 HSNMETLYKELGD 280 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555543
Done!