Query 001393
Match_columns 1087
No_of_seqs 632 out of 2549
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 23:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5077 Ubiquitin carboxyl-ter 100.0 1E-182 3E-187 1534.3 49.8 1001 44-1075 30-1064(1089)
2 KOG1863 Ubiquitin carboxyl-ter 100.0 2E-108 3E-113 1048.4 17.9 979 49-1059 23-1034(1093)
3 cd02659 peptidase_C19C A subfa 100.0 1.2E-56 2.7E-61 514.8 32.4 320 195-522 1-333 (334)
4 PF12436 USP7_ICP0_bdg: ICP0-b 100.0 2.1E-57 4.6E-62 493.2 21.2 249 621-874 1-249 (249)
5 cd02668 Peptidase_C19L A subfa 100.0 8.2E-56 1.8E-60 505.1 29.8 308 198-519 1-324 (324)
6 cd02664 Peptidase_C19H A subfa 100.0 8.8E-55 1.9E-59 496.5 26.9 286 198-519 1-327 (327)
7 cd02663 Peptidase_C19G A subfa 100.0 1.2E-54 2.7E-59 490.1 26.6 276 198-519 1-300 (300)
8 KOG1865 Ubiquitin carboxyl-ter 100.0 1E-55 2.3E-60 498.8 17.7 298 186-521 99-410 (545)
9 cd02671 Peptidase_C19O A subfa 100.0 9.1E-54 2E-58 485.9 26.3 284 190-519 18-332 (332)
10 KOG4598 Putative ubiquitin-spe 100.0 4.1E-54 8.9E-59 483.0 16.4 468 191-717 82-624 (1203)
11 cd02657 Peptidase_C19A A subfa 100.0 2E-52 4.3E-57 473.8 25.6 288 198-519 1-305 (305)
12 cd02660 Peptidase_C19D A subfa 100.0 3.3E-52 7.1E-57 477.0 25.9 280 197-483 1-318 (328)
13 cd02667 Peptidase_C19K A subfa 100.0 3.8E-52 8.3E-57 464.7 21.5 241 198-483 1-269 (279)
14 cd02661 Peptidase_C19E A subfa 100.0 1E-49 2.2E-54 451.1 23.6 276 197-483 2-294 (304)
15 KOG1866 Ubiquitin carboxyl-ter 100.0 1.5E-51 3.3E-56 468.7 5.6 328 187-526 86-439 (944)
16 cd02658 Peptidase_C19B A subfa 100.0 4.8E-49 1E-53 447.3 24.6 273 198-519 1-311 (311)
17 cd02669 Peptidase_C19M A subfa 100.0 5.4E-49 1.2E-53 464.2 25.8 293 192-519 115-440 (440)
18 cd02662 Peptidase_C19F A subfa 100.0 4.7E-47 1E-51 414.0 22.5 203 198-483 1-229 (240)
19 cd02665 Peptidase_C19I A subfa 100.0 3.7E-46 8.1E-51 397.2 19.2 220 198-519 1-228 (228)
20 cd02666 Peptidase_C19J A subfa 100.0 7.6E-47 1.7E-51 428.3 14.0 268 197-519 2-343 (343)
21 PF14533 USP7_C2: Ubiquitin-sp 100.0 1.2E-45 2.7E-50 391.8 19.0 189 882-1077 1-198 (213)
22 COG5560 UBP12 Ubiquitin C-term 100.0 7.2E-46 1.6E-50 416.8 9.0 298 191-522 260-823 (823)
23 COG5533 UBP5 Ubiquitin C-termi 100.0 1.6E-44 3.5E-49 376.2 17.6 284 195-521 70-414 (415)
24 cd02674 Peptidase_C19R A subfa 100.0 3.5E-43 7.5E-48 381.7 18.5 211 198-482 1-219 (230)
25 PF00443 UCH: Ubiquitin carbox 100.0 4.4E-40 9.6E-45 363.4 21.4 245 196-518 1-269 (269)
26 cd02673 Peptidase_C19Q A subfa 100.0 7.9E-40 1.7E-44 355.6 19.0 230 199-519 2-245 (245)
27 KOG0944 Ubiquitin-specific pro 100.0 5.4E-40 1.2E-44 373.4 17.3 221 192-420 303-546 (763)
28 KOG1868 Ubiquitin C-terminal h 100.0 8.7E-41 1.9E-45 396.1 10.8 303 190-526 295-651 (653)
29 cd02257 Peptidase_C19 Peptidas 100.0 3.2E-37 7E-42 336.1 21.1 238 198-519 1-255 (255)
30 KOG1867 Ubiquitin-specific pro 100.0 2.1E-37 4.5E-42 362.3 15.5 298 192-522 157-485 (492)
31 cd02672 Peptidase_C19P A subfa 100.0 1.3E-35 2.9E-40 326.7 20.2 236 186-479 5-260 (268)
32 KOG1873 Ubiquitin-specific pro 100.0 4.3E-36 9.4E-41 344.4 5.4 147 344-521 680-877 (877)
33 COG5207 UBP14 Isopeptidase T [ 100.0 3.2E-34 6.9E-39 315.2 17.2 216 196-418 303-534 (749)
34 KOG1870 Ubiquitin C-terminal h 100.0 1.2E-31 2.6E-36 335.7 12.9 297 190-522 240-842 (842)
35 cd02670 Peptidase_C19N A subfa 100.0 1.3E-30 2.7E-35 280.4 13.9 184 198-479 1-221 (241)
36 PF13423 UCH_1: Ubiquitin carb 100.0 6.2E-30 1.3E-34 288.1 19.6 266 197-474 1-295 (295)
37 KOG1864 Ubiquitin-specific pro 100.0 1.5E-30 3.2E-35 309.0 12.7 285 192-483 228-557 (587)
38 KOG1871 Ubiquitin-specific pro 99.9 4.4E-26 9.5E-31 247.2 11.4 299 196-522 28-420 (420)
39 KOG1872 Ubiquitin-specific pro 99.9 2.3E-26 4.9E-31 256.1 4.1 295 197-521 106-469 (473)
40 cd03775 MATH_Ubp21p Ubiquitin- 99.9 4E-23 8.6E-28 204.9 12.6 124 54-178 2-134 (134)
41 cd03772 MATH_HAUSP Herpesvirus 99.9 1.5E-22 3.2E-27 201.7 13.8 129 52-182 2-135 (137)
42 KOG2026 Spindle pole body prot 99.9 4.5E-21 9.7E-26 207.3 14.0 275 190-483 128-429 (442)
43 cd03774 MATH_SPOP Speckle-type 99.8 1.1E-19 2.3E-24 181.6 12.3 127 51-182 3-139 (139)
44 cd03773 MATH_TRIM37 Tripartite 99.8 4.5E-19 9.7E-24 175.6 10.8 122 50-178 2-130 (132)
45 cd00270 MATH_TRAF_C Tumor Necr 99.7 1.9E-18 4.1E-23 174.8 8.0 123 53-177 1-148 (149)
46 cd03780 MATH_TRAF5 Tumor Necro 99.7 7E-18 1.5E-22 168.7 9.8 125 53-177 1-147 (148)
47 cd03776 MATH_TRAF6 Tumor Necro 99.7 6.4E-18 1.4E-22 170.4 8.2 124 53-178 1-147 (147)
48 cd03777 MATH_TRAF3 Tumor Necro 99.7 2.1E-17 4.6E-22 171.0 10.7 127 50-178 36-184 (186)
49 cd03781 MATH_TRAF4 Tumor Necro 99.7 1.8E-17 3.9E-22 168.1 9.6 123 53-177 1-153 (154)
50 cd03779 MATH_TRAF1 Tumor Necro 99.7 3.3E-17 7.3E-22 163.0 9.5 125 53-177 1-146 (147)
51 cd00121 MATH MATH (meprin and 99.7 2.9E-16 6.3E-21 152.8 12.4 123 53-178 1-126 (126)
52 cd03771 MATH_Meprin Meprin fam 99.7 2.8E-16 6E-21 159.2 10.8 124 52-177 1-166 (167)
53 KOG1275 PAB-dependent poly(A) 99.7 3.1E-16 6.8E-21 184.6 12.4 305 186-518 489-860 (1118)
54 cd03778 MATH_TRAF2 Tumor Necro 99.6 9.9E-16 2.1E-20 153.9 10.8 126 50-177 16-163 (164)
55 PF00917 MATH: MATH domain; I 99.6 5.7E-16 1.2E-20 149.9 5.9 116 59-179 1-119 (119)
56 smart00061 MATH meprin and TRA 99.5 4.1E-14 9E-19 131.0 10.8 93 55-153 2-95 (95)
57 cd03783 MATH_Meprin_Alpha Mepr 99.3 3.1E-12 6.8E-17 128.0 7.2 123 53-177 2-166 (167)
58 cd03782 MATH_Meprin_Beta Mepri 99.3 8.4E-12 1.8E-16 124.2 7.9 123 53-177 2-166 (167)
59 PF15499 Peptidase_C98: Ubiqui 98.4 1.3E-06 2.8E-11 92.0 9.1 224 200-473 6-252 (275)
60 KOG1987 Speckle-type POZ prote 97.9 5.7E-05 1.2E-09 85.6 10.3 121 55-183 6-129 (297)
61 KOG1864 Ubiquitin-specific pro 96.2 0.002 4.3E-08 78.4 1.8 197 199-396 34-275 (587)
62 KOG1870 Ubiquitin C-terminal h 95.5 0.031 6.7E-07 71.8 8.5 152 885-1040 418-576 (842)
63 COG5560 UBP12 Ubiquitin C-term 94.5 0.17 3.7E-06 60.1 9.9 121 888-1024 445-567 (823)
64 PF14533 USP7_C2: Ubiquitin-sp 93.5 0.71 1.5E-05 49.6 11.7 156 797-964 15-185 (213)
65 PF08715 Viral_protease: Papai 91.3 0.91 2E-05 51.4 9.3 100 192-326 98-199 (320)
66 PF11976 Rad60-SLD: Ubiquitin- 90.2 0.4 8.7E-06 41.8 4.2 56 708-771 13-68 (72)
67 PF12436 USP7_ICP0_bdg: ICP0-b 89.2 3.5 7.6E-05 45.4 11.6 174 867-1056 27-226 (249)
68 KOG1887 Ubiquitin carboxyl-ter 88.8 0.097 2.1E-06 64.3 -0.9 190 277-484 549-773 (806)
69 cd01763 Sumo Small ubiquitin-r 88.2 2 4.4E-05 39.1 7.5 74 686-774 8-81 (87)
70 PF05408 Peptidase_C28: Foot-a 87.7 0.23 5E-06 50.5 1.0 30 449-480 136-165 (193)
71 KOG3556 Familial cylindromatos 87.6 0.31 6.7E-06 56.6 2.1 30 196-225 368-397 (724)
72 cd06406 PB1_P67 A PB1 domain i 87.3 2.1 4.6E-05 38.1 6.7 68 593-671 12-79 (80)
73 PF11543 UN_NPL4: Nuclear pore 87.0 0.95 2.1E-05 40.6 4.5 62 706-773 14-77 (80)
74 KOG0297 TNF receptor-associate 86.8 0.42 9.2E-06 56.1 2.8 76 50-125 277-365 (391)
75 cd01768 RA RA (Ras-associating 85.4 4 8.8E-05 36.9 7.9 64 902-967 2-66 (87)
76 cd01807 GDX_N ubiquitin-like d 84.7 1.8 3.9E-05 38.0 5.1 49 1016-1071 10-58 (74)
77 smart00314 RA Ras association 83.7 5.2 0.00011 36.5 7.9 63 901-965 4-66 (90)
78 PF08817 YukD: WXG100 protein 81.6 1.8 4E-05 38.6 3.9 62 708-773 15-78 (79)
79 cd01798 parkin_N amino-termina 80.8 6.5 0.00014 34.0 7.0 49 1016-1071 8-56 (70)
80 cd01805 RAD23_N Ubiquitin-like 79.5 5.2 0.00011 35.2 6.1 70 692-776 3-74 (77)
81 cd01792 ISG15_repeat1 ISG15 ub 79.4 3.7 7.9E-05 36.7 5.1 51 1016-1071 12-62 (80)
82 cd06406 PB1_P67 A PB1 domain i 78.5 5.5 0.00012 35.5 5.7 64 800-876 4-67 (80)
83 cd01809 Scythe_N Ubiquitin-lik 78.2 5 0.00011 34.6 5.5 68 691-773 2-69 (72)
84 cd01794 DC_UbP_C dendritic cel 78.0 2.6 5.7E-05 36.7 3.6 33 594-626 11-43 (70)
85 cd01796 DDI1_N DNA damage indu 77.8 2.8 6E-05 36.6 3.7 33 594-626 12-44 (71)
86 PTZ00044 ubiquitin; Provisiona 77.7 2.8 6.1E-05 36.8 3.8 34 593-626 12-45 (76)
87 cd01793 Fubi Fubi ubiquitin-li 77.3 2.9 6.3E-05 36.7 3.7 33 594-626 11-43 (74)
88 cd01812 BAG1_N Ubiquitin-like 76.5 3.1 6.8E-05 35.9 3.7 33 594-626 12-44 (71)
89 cd01803 Ubiquitin Ubiquitin. U 76.5 8 0.00017 33.7 6.4 49 1016-1071 10-58 (76)
90 cd01794 DC_UbP_C dendritic cel 75.8 5.3 0.00011 34.8 4.9 49 1016-1071 8-56 (70)
91 cd01807 GDX_N ubiquitin-like d 75.2 3.5 7.6E-05 36.2 3.7 33 594-626 13-45 (74)
92 cd01798 parkin_N amino-termina 75.2 3.6 7.7E-05 35.7 3.7 33 594-626 11-43 (70)
93 cd01799 Hoil1_N Ubiquitin-like 74.7 4.2 9.1E-05 36.0 4.0 33 592-624 13-45 (75)
94 cd01791 Ubl5 UBL5 ubiquitin-li 74.5 3.6 7.8E-05 36.2 3.5 31 595-625 15-45 (73)
95 cd01783 DAGK_delta_RA Ubiquiti 74.1 14 0.0003 34.4 7.2 62 901-965 4-70 (97)
96 cd01806 Nedd8 Nebb8-like ubiq 73.5 4.7 0.0001 35.3 4.1 33 594-626 13-45 (76)
97 PF14560 Ubiquitin_2: Ubiquiti 73.2 11 0.00024 34.3 6.5 59 902-961 2-60 (87)
98 PF00240 ubiquitin: Ubiquitin 73.1 6.4 0.00014 33.8 4.8 58 709-775 9-66 (69)
99 cd01793 Fubi Fubi ubiquitin-li 73.0 11 0.00023 33.1 6.2 48 1017-1071 9-56 (74)
100 cd01803 Ubiquitin Ubiquitin. U 72.7 4.4 9.6E-05 35.4 3.8 33 594-626 13-45 (76)
101 PF14560 Ubiquitin_2: Ubiquiti 72.4 12 0.00025 34.1 6.5 68 708-776 16-83 (87)
102 cd01806 Nedd8 Nebb8-like ubiq 72.1 9.4 0.0002 33.3 5.7 70 692-776 3-72 (76)
103 cd01810 ISG15_repeat2 ISG15 ub 72.1 13 0.00029 32.5 6.6 61 1016-1084 8-68 (74)
104 smart00213 UBQ Ubiquitin homol 72.1 5.1 0.00011 33.4 3.9 34 593-626 11-44 (64)
105 cd01782 AF6_RA_repeat1 Ubiquit 71.7 34 0.00073 32.3 9.1 65 889-954 11-78 (112)
106 cd01809 Scythe_N Ubiquitin-lik 71.2 5.3 0.00012 34.5 3.9 34 593-626 12-45 (72)
107 cd01763 Sumo Small ubiquitin-r 70.9 6.2 0.00013 35.9 4.4 34 593-626 23-56 (87)
108 PF00240 ubiquitin: Ubiquitin 70.7 6.8 0.00015 33.6 4.4 33 594-626 8-40 (69)
109 smart00213 UBQ Ubiquitin homol 70.3 9.7 0.00021 31.7 5.2 46 1018-1070 11-56 (64)
110 cd01810 ISG15_repeat2 ISG15 ub 70.2 7.3 0.00016 34.2 4.5 56 710-774 13-68 (74)
111 PF05408 Peptidase_C28: Foot-a 69.5 7.6 0.00017 39.9 4.9 36 191-226 28-64 (193)
112 cd01800 SF3a120_C Ubiquitin-li 67.9 6.6 0.00014 34.7 3.8 34 593-626 9-42 (76)
113 cd01808 hPLIC_N Ubiquitin-like 67.9 6.6 0.00014 34.1 3.7 33 594-626 12-44 (71)
114 PF00788 RA: Ras association ( 67.1 16 0.00036 33.0 6.4 68 901-969 4-72 (93)
115 cd01789 Alp11_N Ubiquitin-like 66.4 9.7 0.00021 34.4 4.6 37 594-630 15-51 (84)
116 cd01799 Hoil1_N Ubiquitin-like 66.3 7.6 0.00017 34.4 3.8 33 1014-1046 10-42 (75)
117 cd01769 UBL Ubiquitin-like dom 66.0 8.6 0.00019 32.6 4.0 33 594-626 10-42 (69)
118 cd01804 midnolin_N Ubiquitin-l 65.5 6.8 0.00015 34.8 3.4 32 594-625 14-45 (78)
119 cd01769 UBL Ubiquitin-like dom 64.7 8.3 0.00018 32.7 3.7 48 1016-1070 7-54 (69)
120 cd01802 AN1_N ubiquitin-like d 64.3 8.3 0.00018 36.4 3.9 33 594-626 40-72 (103)
121 cd01791 Ubl5 UBL5 ubiquitin-li 63.9 9.4 0.0002 33.6 3.9 49 1016-1071 11-59 (73)
122 cd01813 UBP_N UBP ubiquitin pr 63.9 7.7 0.00017 34.2 3.4 32 595-626 13-44 (74)
123 PTZ00044 ubiquitin; Provisiona 63.7 10 0.00022 33.3 4.2 50 1016-1072 10-59 (76)
124 cd01796 DDI1_N DNA damage indu 62.3 15 0.00032 32.0 4.8 56 709-773 13-69 (71)
125 cd01792 ISG15_repeat1 ISG15 ub 62.0 7.5 0.00016 34.7 3.0 31 595-625 16-46 (80)
126 cd01789 Alp11_N Ubiquitin-like 61.2 57 0.0012 29.4 8.6 66 902-969 2-67 (84)
127 cd01802 AN1_N ubiquitin-like d 61.1 22 0.00048 33.5 6.1 73 687-774 25-97 (103)
128 cd01813 UBP_N UBP ubiquitin pr 60.6 11 0.00024 33.2 3.7 53 1016-1072 9-61 (74)
129 cd01797 NIRF_N amino-terminal 60.0 28 0.00061 31.0 6.3 56 712-776 19-74 (78)
130 cd01795 USP48_C USP ubiquitin- 59.8 14 0.0003 34.3 4.2 35 593-627 16-50 (107)
131 cd01797 NIRF_N amino-terminal 59.6 8.1 0.00017 34.5 2.7 29 598-626 19-47 (78)
132 cd01805 RAD23_N Ubiquitin-like 58.5 14 0.0003 32.4 4.1 33 594-626 13-47 (77)
133 cd01812 BAG1_N Ubiquitin-like 57.0 28 0.0006 29.9 5.7 55 710-773 14-68 (71)
134 PF11976 Rad60-SLD: Ubiquitin- 55.9 19 0.00042 31.1 4.5 35 1016-1052 10-44 (72)
135 TIGR03180 UraD_2 OHCU decarbox 54.5 13 0.00028 38.0 3.6 28 1013-1041 105-132 (158)
136 PF14836 Ubiquitin_3: Ubiquiti 53.4 83 0.0018 28.8 8.1 67 706-777 14-81 (88)
137 cd06411 PB1_p51 The PB1 domain 52.7 50 0.0011 29.5 6.4 68 594-670 9-76 (78)
138 cd01804 midnolin_N Ubiquitin-l 51.3 18 0.0004 32.1 3.6 47 1016-1070 11-57 (78)
139 TIGR02958 sec_mycoba_snm4 secr 50.9 41 0.0009 40.5 7.6 67 708-778 14-82 (452)
140 cd00196 UBQ Ubiquitin-like pro 48.7 22 0.00048 28.2 3.6 31 1016-1046 7-37 (69)
141 cd01795 USP48_C USP ubiquitin- 47.5 45 0.00097 31.1 5.4 63 706-776 15-77 (107)
142 cd06407 PB1_NLP A PB1 domain i 46.9 28 0.0006 31.5 4.0 25 1020-1044 13-37 (82)
143 cd01800 SF3a120_C Ubiquitin-li 45.1 28 0.00061 30.7 3.8 48 1016-1070 7-54 (76)
144 PF14836 Ubiquitin_3: Ubiquiti 44.1 48 0.001 30.4 5.1 68 592-673 14-81 (88)
145 PF11543 UN_NPL4: Nuclear pore 42.3 28 0.00061 31.3 3.4 29 1019-1047 16-44 (80)
146 KOG0010 Ubiquitin-like protein 40.8 49 0.0011 39.4 5.9 68 900-978 14-82 (493)
147 KOG1769 Ubiquitin-like protein 39.9 81 0.0018 29.4 5.9 59 709-776 34-92 (99)
148 TIGR03164 UHCUDC OHCU decarbox 39.1 29 0.00064 35.4 3.4 28 1013-1041 105-132 (157)
149 cd01790 Herp_N Homocysteine-re 38.7 1.9E+02 0.0042 25.9 8.0 62 902-970 2-64 (79)
150 cd00196 UBQ Ubiquitin-like pro 37.6 42 0.00091 26.5 3.6 33 594-626 10-42 (69)
151 PRK13798 putative OHCU decarbo 37.4 32 0.0007 35.4 3.4 28 1013-1041 110-137 (166)
152 cd01612 APG12_C Ubiquitin-like 36.9 59 0.0013 29.7 4.6 35 709-743 19-53 (87)
153 cd06408 PB1_NoxR The PB1 domai 36.2 97 0.0021 28.3 5.7 33 814-846 12-44 (86)
154 cd01768 RA RA (Ras-associating 33.8 1.1E+02 0.0024 27.5 6.0 38 707-744 14-52 (87)
155 cd06411 PB1_p51 The PB1 domain 32.6 61 0.0013 28.9 3.8 58 815-876 8-65 (78)
156 PF00788 RA: Ras association ( 32.4 1.3E+02 0.0028 27.0 6.3 64 693-758 4-68 (93)
157 PF00789 UBX: UBX domain; Int 31.9 1.6E+02 0.0036 26.0 6.7 77 689-775 6-82 (82)
158 cd01808 hPLIC_N Ubiquitin-like 31.7 56 0.0012 28.2 3.6 48 1016-1071 10-57 (71)
159 PF14847 Ras_bdg_2: Ras-bindin 31.7 82 0.0018 29.9 4.8 52 1016-1068 10-66 (105)
160 COG3478 Predicted nucleic-acid 31.2 40 0.00087 28.6 2.3 34 361-394 3-39 (68)
161 smart00666 PB1 PB1 domain. Pho 31.0 1.6E+02 0.0035 25.9 6.5 29 1016-1044 10-38 (81)
162 cd01771 Faf1_UBX Faf1 UBX doma 30.4 1.3E+02 0.0029 26.9 5.7 62 595-671 18-79 (80)
163 PTZ00380 microtubule-associate 29.9 1.6E+02 0.0034 28.8 6.4 63 595-673 43-106 (121)
164 smart00666 PB1 PB1 domain. Pho 29.0 2.4E+02 0.0053 24.7 7.3 35 593-627 12-46 (81)
165 cd01790 Herp_N Homocysteine-re 28.9 59 0.0013 29.2 3.1 30 597-626 19-50 (79)
166 PF02196 RBD: Raf-like Ras-bin 28.8 1E+02 0.0022 27.0 4.5 38 1014-1051 8-45 (71)
167 cd01814 NTGP5 Ubiquitin-like N 28.7 44 0.00096 31.9 2.4 42 585-626 9-57 (113)
168 KOG3206 Alpha-tubulin folding 28.4 1.6E+02 0.0035 31.2 6.5 82 902-986 2-83 (234)
169 COG5227 SMT3 Ubiquitin-like pr 28.3 95 0.0021 28.3 4.2 43 594-640 37-79 (103)
170 PF02991 Atg8: Autophagy prote 28.3 91 0.002 29.5 4.5 33 708-740 35-67 (104)
171 cd01781 AF6_RA_repeat2 Ubiquit 28.1 2E+02 0.0042 27.1 6.5 36 918-953 19-55 (100)
172 cd01611 GABARAP Ubiquitin doma 27.2 96 0.0021 29.8 4.5 35 708-742 43-77 (112)
173 KOG4495 RNA polymerase II tran 27.0 53 0.0012 30.2 2.5 30 600-629 20-49 (110)
174 cd06410 PB1_UP2 Uncharacterize 26.0 3E+02 0.0064 25.8 7.4 31 593-624 24-54 (97)
175 cd06410 PB1_UP2 Uncharacterize 25.9 1.8E+02 0.0038 27.3 5.9 60 1016-1077 22-83 (97)
176 cd05992 PB1 The PB1 domain is 24.3 1.8E+02 0.0039 25.5 5.6 37 1016-1055 9-46 (81)
177 cd01784 rasfadin_RA Ubiquitin- 24.2 1.8E+02 0.0039 26.6 5.2 37 918-954 16-52 (87)
178 KOG1769 Ubiquitin-like protein 23.7 1.4E+02 0.003 27.9 4.6 34 593-626 32-65 (99)
179 PF00564 PB1: PB1 domain; Int 23.0 3.6E+02 0.0078 23.7 7.4 34 595-628 15-48 (84)
180 cd06407 PB1_NLP A PB1 domain i 22.8 3.2E+02 0.007 24.6 6.8 69 593-669 11-80 (82)
181 cd01811 OASL_repeat1 2'-5' oli 22.8 3.3E+02 0.0072 24.2 6.3 63 1016-1082 10-73 (80)
182 KOG1892 Actin filament-binding 22.8 2E+02 0.0043 37.1 7.0 95 868-967 11-110 (1629)
183 cd01777 SNX27_RA Ubiquitin dom 22.4 1.8E+02 0.0038 26.7 4.9 50 916-965 13-63 (87)
184 cd06409 PB1_MUG70 The MUG70 pr 22.2 1.8E+02 0.0039 26.6 5.0 30 1016-1045 10-39 (86)
185 TIGR00601 rad23 UV excision re 22.2 1.8E+02 0.0038 34.3 6.3 71 691-776 2-75 (378)
186 cd06396 PB1_NBR1 The PB1 domai 21.4 1.4E+02 0.0031 26.9 4.1 35 1020-1067 13-49 (81)
187 cd01775 CYR1_RA Ubiquitin doma 21.2 3.2E+02 0.007 25.5 6.4 47 917-965 15-61 (97)
188 cd01801 Tsc13_N Ubiquitin-like 20.3 1.1E+02 0.0024 26.9 3.3 27 599-625 20-47 (77)
No 1
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-182 Score=1534.27 Aligned_cols=1001 Identities=36% Similarity=0.602 Sum_probs=908.8
Q ss_pred CCccCCCCCcEEEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCCCCCceEEEEeecCCCC---CCCCceEEEEEEE
Q 001393 44 NQQVEDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGT---LPYGWSRYAQFSL 120 (1087)
Q Consensus 44 ~~~~~~~~~~~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~~~~~lSiyL~~~~~~~---~~~~W~~~a~f~l 120 (1087)
++.+++.....|+|+|++||.+. +++.||+|.+||+.|+|.+||+|+++..+|+||+....+. ....|.|||||+|
T Consensus 30 ~pd~Ee~~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf 108 (1089)
T COG5077 30 DPDVEELLEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGKYYDCCAQFAF 108 (1089)
T ss_pred CccHHHHhhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcCcchhhhhheee
Confidence 77888999999999999999994 7899999999999999999999998766999999986531 1236999999999
Q ss_pred EEEeecccceeEEecceeeecCCCCCcccccccCCCCCCCCCC---CccccccceeeeEEEEeeccc--cc----cCCCC
Q 001393 121 AVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSR---GYLVNDSVVVEAEVAVRKVLD--YW----SYDSK 191 (1087)
Q Consensus 121 ~l~n~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~---gfL~nD~l~I~~~V~v~~~~~--~~----~~~s~ 191 (1087)
.|.|+..|+....++++|+|+...+||||++|+.++.|..|+. +|++++++.|+++|+|++++. .| +|+||
T Consensus 109 ~Is~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSK 188 (1089)
T COG5077 109 DISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSK 188 (1089)
T ss_pred ecCCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccc
Confidence 9999999988888899999999999999999999999987654 589999999999999999965 34 99999
Q ss_pred CcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCc
Q 001393 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDT 271 (1087)
Q Consensus 192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~ 271 (1087)
++||||||+|+|+||||||+||+||.+..||+.+|.+|+ ++..+.++++++||++|++||.++.++++.+|+++|||.+
T Consensus 189 keTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~grdSValaLQr~Fynlq~~~~PvdTteltrsfgWds 267 (1089)
T COG5077 189 KETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDS 267 (1089)
T ss_pred cceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHHHhccCCCcchHHhhhhcCccc
Confidence 999999999999999999999999999999999999998 5666778999999999999999999999999999999999
Q ss_pred cCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHHHHHhhc
Q 001393 272 YDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKY 351 (1087)
Q Consensus 272 ~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~e~L~~~ 351 (1087)
.++++|||+|||.++|+|.||..|+++..++.++.+|.|+|++++.|.+..++|.+.|.||+++|++++.++|++++++|
T Consensus 268 ~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~y 347 (1089)
T COG5077 268 DDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRY 347 (1089)
T ss_pred chHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCcCC
Q 001393 352 VEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADR 431 (1087)
Q Consensus 352 ~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~ 431 (1087)
++.|+|+|+|+|.|+++|.|+|+|++.|.+|||||++|||||+||+.++.++|||++++||.++|| .+|++.++++
T Consensus 348 IqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl----~pfld~da~k 423 (1089)
T COG5077 348 IQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDL----LPFLDRDADK 423 (1089)
T ss_pred hhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhcc----ccccCchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999887
Q ss_pred CCC--ccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCccccc
Q 001393 432 SVR--NLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTK 509 (1087)
Q Consensus 432 ~~~--~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~ 509 (1087)
++. +.|.|+||+||+|+.+.|||||++|+..+|+||+|||++||+++..+|+++||||+.... .+. .......+
T Consensus 424 sen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~--~k~--r~~~~~kR 499 (1089)
T COG5077 424 SENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYK--DKI--RDHSGIKR 499 (1089)
T ss_pred hcccCcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCc--ccc--cCCchhhh
Confidence 666 999999999999999999999999999999999999999999999999999999975321 111 11234677
Q ss_pred CCceEEEEEEeeccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccceeeeecCChhHHhhccccceecccC
Q 001393 510 YSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVD 589 (1087)
Q Consensus 510 ~~~AYmL~Y~R~~~~~~~l~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~ 589 (1087)
..+||||+|.|++..++++.||...+||+|+.+.+.+|.++.|.|.+|++|+|+|..++++|.+.|.+|+| ||..|
T Consensus 500 fmsAYmLvYlRks~~ddLlnPV~a~diP~hv~e~l~eei~~~e~r~kei~e~hlYr~vrl~tid~f~~yhg----FDy~D 575 (1089)
T COG5077 500 FMSAYMLVYLRKSMLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVRCKEIDEIHLYRGVRLYTIDSFIHYHG----FDYPD 575 (1089)
T ss_pred hhhhheeeeehHhHHHhhhCchhhhhCCHHHHHhhCHHHHHHHHHHHHHHHhhhheeeEEeecchhhhccC----cCchh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999 99887
Q ss_pred CCC------ceEEEEeccccHHHHHHHHHHHhCCCCCc-eEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccc
Q 001393 590 HDK------VRSFRVQKQTSFMAFKEEIAKEFGIPIQL-QRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHT 662 (1087)
Q Consensus 590 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1087)
+.. .+.+++++.+++.+|...||+.++.|-+. +|.|.|.+|+|+|.|.++|+. .-..|+.++....++ ..
T Consensus 576 fs~~~~d~~l~qf~iKr~akisdl~~~iae~ln~pqs~~~r~w~m~krhn~tvrvd~P~n--~vnit~~e~~~m~tr-~g 652 (1089)
T COG5077 576 FSSELNDSGLAQFVIKRGAKISDLRNNIAEHLNTPQSLYLREWTMIKRHNKTVRVDRPCN--RVNITTRELVGMNTR-TG 652 (1089)
T ss_pred hhhhcccccceeEEeecCCCHHHHHHHHHHHcCCCceeeeEEEEEEeccccceeecCcch--hhhhHHHHHhhccch-hH
Confidence 764 57899999999999999999999999998 999999999999999999985 446788888765443 23
Q ss_pred cceeEEEEeecC-CCCCC-CCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEE
Q 001393 663 AELRLFLEVEFG-PDLHP-IAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (1087)
Q Consensus 663 ~~~~l~~e~~~~-~~~~~-~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~ly 740 (1087)
..+++|||.... .+... ..........++||+||||+.+|++.|+|++.|.+..+|+++.|.|++ .|+.++||.+|
T Consensus 653 e~l~~yle~~iEhnqL~s~~~~~lt~d~~~~ifvkyfd~~tq~i~gfg~lhvnk~~~issisp~ied--~~ssn~plt~y 730 (1089)
T COG5077 653 EELRSYLERIIEHNQLDSQRKVALTKDGVINIFVKYFDYTTQPISGFGGLHVNKFLKISSISPWIED--SISSNLPLTLY 730 (1089)
T ss_pred HHHHHHHHhhhhhhhhhhhhheeecCCcceEEEEEeeccccccccCccchhhhhhcccccccHHHhh--cccCCCCcchh
Confidence 467888887542 11110 111223456699999999999999999999999999999999999999 89999999999
Q ss_pred EEeecCCCceecccCcCCccccccCCCCCEEEEEeCCCCCCccCCCCCCHHHHHHHhhceeEEEEEecCCC-CCCcEEEE
Q 001393 741 EEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRP-KEDAFCLE 819 (1087)
Q Consensus 741 EEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~~~~~~~~~~y~~v~~yy~~L~nr~~v~f~~~~~~-~~~~f~l~ 819 (1087)
|||| |+ |+.-|.++.||..+|++.||||||+++...+......|.++.++|+||++||.|.|+..... ....|+++
T Consensus 731 eeik--pg-mvd~i~~n~t~~~sei~tgDIi~Fe~p~a~e~Dts~~ydsa~klydfl~~rVlv~frrfsd~~~~~vfefl 807 (1089)
T COG5077 731 EEIK--PG-MVDTIGDNITFIGSEIGTGDIICFEVPGAVEFDTSSAYDSALKLYDFLQGRVLVAFRRFSDEYRENVFEFL 807 (1089)
T ss_pred hhhc--cC-ccccccCCcceeecccCcCcEEEEeccCcccccccccchhhhHHHHhhcCcEEEEEEeeccccccceEEEe
Confidence 9998 87 56999999999999999999999998866666666779999999999999999999954322 23479999
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCCCccccCcchHHHhhcc-cCC-ccceEEEEEecCChhhhc
Q 001393 820 LSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVH-YNQ-TSDILYYEVLDIPLPELQ 897 (1087)
Q Consensus 820 ls~~~~Y~~la~~va~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~-~~~~l~YevL~~pl~elE 897 (1087)
++....|++||..||.++++ +|.+||+++++.....+. .-++..+.-+|.+.|.. +.. +....+||+|++||+|||
T Consensus 808 l~~~~~Yddlcr~vs~~~hv-~p~ylr~~~~~~l~~~~r-~vv~s~s~fll~eal~ss~e~~q~p~~~yevldvpLsele 885 (1089)
T COG5077 808 LFIGDFYDDLCRNVSCKLHV-TPFYLRGTKSTELEDRIR-RVVGSKSIFLLKEALSSSSEFRQAPVDFYEVLDVPLSELE 885 (1089)
T ss_pred eecCccHHHHHHHhccccCC-ChhHheeeeccCcccccc-eeeCCchHhHHHHHhcchhhhccCCcceeeecCccHHHHh
Confidence 99999999999999999997 599999999655443333 34454555799999965 333 446779999999999999
Q ss_pred cCceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCC-CccEEEEEEeccEEEEecCCcccccccccccce
Q 001393 898 GLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHP-NAELRLLEVFYHKIYKIFAPNEKIENINDQYWT 976 (1087)
Q Consensus 898 ~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lrl~~v~~~k~~~~~~~~~~i~~i~~~~~~ 976 (1087)
++|.+++.|+++++.+++..++++.|++|+.|++..+..|+++.++ ..++|+|++.++|+.+-+...+.+..++. ..+
T Consensus 886 r~r~irl~flsngy~h~~l~ef~v~kdyt~~d~l~~v~~Kvg~tde~kk~vlv~e~~n~r~~r~hsl~tl~~d~n~-~st 964 (1089)
T COG5077 886 RKRLIRLCFLSNGYQHVYLAEFYVEKDYTAVDHLHIVVTKVGCTDELKKSVLVYEVVNLRPVRGHSLKTLIIDDNV-RST 964 (1089)
T ss_pred cccceEEEEeecCceEEEEEEEeecccccHHHHHHHHHhhcCCcHhhhhcEEEEEEeecceecccCccceEEeccc-cce
Confidence 9999999999999999999999999999999999999999999875 57899999999999999999999999986 779
Q ss_pred EEEEecccccccCCCCCeEEEEEeeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEe
Q 001393 977 LRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLS 1056 (1087)
Q Consensus 977 ~~~e~iP~~e~~~~~~~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~ 1056 (1087)
+++|.+|.++++...+++.|.|.||+|+..|.| ||||+|+|.++|+|.++|.||++|+|.++|+|+|+|++++.
T Consensus 965 lygev~pleq~ql~t~e~~VvVqhffkdl~r~h------gi~f~f~i~p~etf~dtk~rl~arfg~~~k~Fskikl~vg~ 1038 (1089)
T COG5077 965 LYGEVFPLEQEQLTTNEMCVVVQHFFKDLIRTH------GIPFMFVIVPFETFLDTKVRLVARFGYKYKLFSKIKLFVGK 1038 (1089)
T ss_pred eeeEecchhhhccccCCcEEEEeHHHHHHHHhc------CCceEEEeccccccchhHHHHHHHhCCCceeeeeEEEEEee
Confidence 999999999999999999999999999999988 99999999999999999999999999999999999999993
Q ss_pred ---cC----CcccccCchhhhhhccc
Q 001393 1057 ---LG----RPEYLVDTDTVFNRFQV 1075 (1087)
Q Consensus 1057 ---~~----~~~y~~d~~~~~~~~~~ 1075 (1087)
.+ ++.|++|++|+++..+-
T Consensus 1039 s~~~g~~~~~~~~fnDedilyd~ie~ 1064 (1089)
T COG5077 1039 SYTDGELDWPMSYFNDEDILYDLIER 1064 (1089)
T ss_pred cccccccccccccccchhhhhhhhhc
Confidence 33 68999999999988764
No 2
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-108 Score=1048.36 Aligned_cols=979 Identities=38% Similarity=0.550 Sum_probs=850.4
Q ss_pred CCCCcEEEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCCCCCceEEEEeecCCCCCCCCceEEEEEEEEEEeeccc
Q 001393 49 DPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHS 128 (1087)
Q Consensus 49 ~~~~~~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~n~~~~ 128 (1087)
+...+..+|.+.++..+. .+..||.|-.|+.+|+|+++|+|+....+++|+++...+.. ..|+|++++.+.++|..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~ 100 (1093)
T KOG1863|consen 23 TSLNQSTTIDGIDDKSLL-YRALSSNFGAGATKWKILIAPKVNSLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDN 100 (1093)
T ss_pred chhcccccccCcCcchhh-hHhcCccccccccceeeeeccccCcccceeEEeeeccCCCC-cceEecchhhhccccCCCC
Confidence 344555668888888875 48899999999999999999999988999999999987665 5599999999999996666
Q ss_pred ceeEEecceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeecccc-ccCCCCCcccc-cccccCCccc
Q 001393 129 KYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDY-WSYDSKKETGY-VGLKNQGATC 206 (1087)
Q Consensus 129 ~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~~~~-~~~~s~~~~g~-~GL~N~GnTC 206 (1087)
.....+.++|.|.....||||++|+.+.++.++..||+.+|++.+++.|++..+++. +.||+++.+|+ +||+|+||||
T Consensus 101 ~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTC 180 (1093)
T KOG1863|consen 101 LPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATC 180 (1093)
T ss_pred chhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCCCcee
Confidence 667777899999999999999999999999999999999999999999999998776 79999999999 9999999999
Q ss_pred cchhHHHHHhcChhHHHHHccCCC-CCCCCCCCCHHHHHHHHHHHHhcCCC-cccchhhhhhcCCCccCccccccHHHHH
Q 001393 207 YMNSLLQTLYHIPYFRKAVYHMPT-TENDLPSGSIPLALQSLFYKLQYNDT-SVATKELTKSFGWDTYDSFMQHDVQELN 284 (1087)
Q Consensus 207 Y~NSvLQ~L~~~p~fr~~l~~~~~-~~~~~~~~~~~~~Lq~Lf~~l~~s~~-~v~~~~l~~~~~~~~~~~~~QqDa~Efl 284 (1087)
||||+||+||+++.||+.||+++. ..+..+..+++.+||+||+.||.++. +|++.+++++++|.+...++|||+|||+
T Consensus 181 Y~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~~~~~~QqDvqEf~ 260 (1093)
T KOG1863|consen 181 YVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDSNDSFEQQDVQEFL 260 (1093)
T ss_pred eehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhcccccHHhhhhHHHHH
Confidence 999999999999999999999993 25667778899999999999999987 9999999999999998999999999999
Q ss_pred HHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHHHHHhhccceEEecCCCccc
Q 001393 285 RVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYH 364 (1087)
Q Consensus 285 ~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~e~L~~~~~~E~l~g~n~y~ 364 (1087)
++|+|.|++.++++...+.+.++|.|++.+++.|..|++++.+.|.|++++|++++..++.++|..|++.|.++|+|+|.
T Consensus 261 ~~l~d~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~~~ 340 (1093)
T KOG1863|consen 261 TKLLDWLEDSMIDAKVENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNKYD 340 (1093)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred ccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCC-CcCCCCC-ccEEEEEE
Q 001393 365 AEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSP-DADRSVR-NLYTLHSV 442 (1087)
Q Consensus 365 C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~-~~~~~~~-~~Y~L~gV 442 (1087)
+++++.++|.+++.+.+||+||+|||+||.||..++...|++++++||..|+| .+|++. +.+.+.. +.|+|+||
T Consensus 341 ~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~----d~~~~~~~~~~~~~~~~y~l~~v 416 (1093)
T KOG1863|consen 341 AECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDM----DRYLSRFKAEESERSAVYSLHAV 416 (1093)
T ss_pred ccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCcccccc----chhccccchhhhhccceeccchh
Confidence 77778999999999999999999999999999999999999999999999999 566553 3333344 49999999
Q ss_pred EEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeec
Q 001393 443 LVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 443 VvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
++|.|..++|||++|+++...++|++|||..|+.++..+|++.+|||++...... .....||||+|.|.+
T Consensus 417 ~vh~g~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~----------~~~~~~~~lv~~~~s 486 (1093)
T KOG1863|consen 417 LVHSGDAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSST----------ADFKNAYMLVYIRDS 486 (1093)
T ss_pred hcccccccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcc----------cccCCcceEEEEecC
Confidence 9998899999999999988899999999999999999999999999986432111 122359999999999
Q ss_pred cccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccceeeeecCChhHHhhccccceecccCC----CCceEEEE
Q 001393 523 DKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDH----DKVRSFRV 598 (1087)
Q Consensus 523 ~~~~~l~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~----~~~~~~~~ 598 (1087)
..+++++++++.++|.|+.+.+..+..+.+.++++.+++++++.++..+++.+.++.| |++.+. ....++|+
T Consensus 487 ~~~~~~~~v~e~~i~~~l~~~~~~e~~~~~~k~k~~~~~~l~~~i~~~~~d~~~~~~~----~~~~~~~~~~~~~~~~r~ 562 (1093)
T KOG1863|consen 487 CESKILKDISESSIPYHLSETLQKEKYKTEEKDKELEEARLSAVIRALSDDQLIKQHG----FDVEDELYEPEQYRTLRA 562 (1093)
T ss_pred cHHhhhcccchhhccHHHHHHhhhhhhhhhhhhhhhHHhhhhhhhhccCccchhhhcc----chHhhhhcccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 777665 34567899
Q ss_pred eccccHHHHHHHHHHHhCCCCC-ceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEee----c
Q 001393 599 QKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE----F 673 (1087)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~-~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~----~ 673 (1087)
.+...+.+|...++..+|++.. ..|+|.+..|.|.+.++..+........++.+..+... +..+..|++.. .
T Consensus 563 ~~~~~~~eli~~~~~~~~~~~~~~~~~w~~~~r~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 639 (1093)
T KOG1863|consen 563 AKIEELSELITRLLGEFELPPSVQPRLWPLGYRNNLTVLPQYLFNIAPLRSYILDITEKVL---NDLWHEYLELAVEEIG 639 (1093)
T ss_pred HhhhhHHHHHHHHHhhccCCccccchhhhhhccccceEeeecccccchhhhhhhhhhhhhc---cchHHHHHHHHhhhcC
Confidence 9999999999999999999998 89999999999999999887654444445544432211 12233444433 2
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecc
Q 001393 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (1087)
Q Consensus 674 ~~~~~~~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~ 753 (1087)
++.. ...+......++++|+|+||+.++.+.++|+...+...+..++.+.++++.|+++++.+..|+|++.+...+++.
T Consensus 640 ~~~~-~~~~~~~~~~~~~lf~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d~~~~~~~e~~~~~~~~id~ 718 (1093)
T KOG1863|consen 640 GNEV-RRLPSFQFTRDLLLFLKMYDDRKRSVTPSGELAYLALTPLRLLQVLLNELIGVVDDTSTREYSELKEEKDERIDK 718 (1093)
T ss_pred cccc-cccccccchHHHHHHHHHhccccccccchhhccccccCchhhhhhhhhhhcccCCccchHHHHHhcchhhhcchh
Confidence 2211 112334455567999999999999999999999999999999999999999999999999999998443336688
Q ss_pred cCcCCccccccCCCCCEEEEEeCCCCCCccCCCCCCHHHHHHHhhceeEEEEEecCCCCCC-cEEEEEcCCCCHHHHHHH
Q 001393 754 LDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKED-AFCLELSKQHSYDEVVER 832 (1087)
Q Consensus 754 i~~~~t~~~~el~~GDIi~fQ~~~~~~~~~~~~y~~v~~yy~~L~nr~~v~f~~~~~~~~~-~f~l~ls~~~~Y~~la~~ 832 (1087)
+....+|..+++++|||+||+..... ......++++.+|++++.+|..++|..+..+..+ .|+++++.+++|.+++..
T Consensus 719 ~~~~~~~~~~~~~d~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~ 797 (1093)
T KOG1863|consen 719 IAEEKSFDLSELEDGDISVVEEEAAS-KDSESNRADVSEFLENVENRTLQRFRKVSSEIEENSFVLGRQQRVTECILAVL 797 (1093)
T ss_pred hhhhhhhhhhhhhcCCeeeecccccC-CcccccccchHHHHHHHHHHHHHHHhcccccccccccccchhhhhhhhHHHHH
Confidence 88899999999999999999987543 3456679999999999999999999998776666 899999999999999999
Q ss_pred HHHHhCCCCCCceEEeccc-ccCCCCCCCCccccCc-chHHHhhcc-cCCccceE-EEEEecCChhhhccCceEEEEEEc
Q 001393 833 VARKIGLDDPSKIRLTPHN-CYSQQPKPQPIKYRGV-EHLSDMLVH-YNQTSDIL-YYEVLDIPLPELQGLKNLKVAFHH 908 (1087)
Q Consensus 833 va~~l~~~~p~~lr~~~~~-~~~~~~~~~~~~~~~~-~~l~~~l~~-~~~~~~~l-~YevL~~pl~elE~~k~~kv~w~~ 908 (1087)
|+.++++ +|..++..+.. ++.-.+.+...+.+.. ..+..++.. ..+....+ +|.++++++.|+..++.+++.|+.
T Consensus 798 v~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 876 (1093)
T KOG1863|consen 798 VQLALGK-DPISIDSDRAEYDLEKIRFNGTVKLSQVLLDATQLVRDPRERFVSLLKVQFVLPKTIVELLDLKYFKDEWLV 876 (1093)
T ss_pred HHHHhcC-CchhccccccCCchhhccccCcceeeccccccccccccccccccccceecccCCcceeccccccccchhhhc
Confidence 9999996 68998888843 2223344444554443 233333322 22334555 455999999999999999999999
Q ss_pred CCCCeEEEEEEEeCCCCCHH-HHHHHHHhhccCCC-CCccEEEEEEeccEEEEecCCcccccccccccc---------eE
Q 001393 909 ATKDEVVIHNIRLPKQSTVG-DVINELKTKVELSH-PNAELRLLEVFYHKIYKIFAPNEKIENINDQYW---------TL 977 (1087)
Q Consensus 909 ~~~~~~~~~~~~v~k~~tv~-dll~~l~~~~~~~~-~~~~lrl~~v~~~k~~~~~~~~~~i~~i~~~~~---------~~ 977 (1087)
....+.....+.+.|.+||. |++.+..+++.+.+ ..+++|++++.++++++.......+..|+..++ ++
T Consensus 877 ~~~~~~~~~~~~~~k~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 956 (1093)
T KOG1863|consen 877 DMENGVEIMTLAVTKLGTILPDILREVYDRVPLDPFKSDAFRLFEVTSMKLYKETSYQKLLEELNQSYQSFELLLRDLFL 956 (1093)
T ss_pred cccccchhhheeccccchhhHHHHHHHHhhcccCcccccceeEEeecchHHHHhccchhHHHHHhHHHhhHHhhhccccc
Confidence 99999999999999999999 99999999999876 578999999999999999999999988876444 38
Q ss_pred EEEecccccccCC-CCCeEEEEEeeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhC-CCccccceeEEEEE
Q 001393 978 RAEEIPEEEKNLG-PNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQ-VLDEEFSKWKFAFL 1055 (1087)
Q Consensus 978 ~~e~iP~~e~~~~-~~~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~-v~~kef~k~Kfaiv 1055 (1087)
|++++|.+++... +.+.+++|.||.|+... .||+||.+.+.++|++.+++.|++.+++ ++++.|++||+|.+
T Consensus 957 r~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~k~~~~ 1030 (1093)
T KOG1863|consen 957 RGESVPLLEILSSKGAPKLELVIHFSKELVQ------NIGNELNLLIVQGESLKENKDHLFDDLKEVSDELFSVFKHAGA 1030 (1093)
T ss_pred ccccCcHHHHhhcccccceeehhhcchhhhh------hcchhhHHHhccchhHHHHHHHHHHHHHHhhHHHhHHHhhhhh
Confidence 9999999998876 56699999999999853 4599999999999999999999999999 99999999999998
Q ss_pred ecCC
Q 001393 1056 SLGR 1059 (1087)
Q Consensus 1056 ~~~~ 1059 (1087)
+.+.
T Consensus 1031 ~~~~ 1034 (1093)
T KOG1863|consen 1031 SVGH 1034 (1093)
T ss_pred hhcc
Confidence 6655
No 3
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-56 Score=514.84 Aligned_cols=320 Identities=54% Similarity=0.887 Sum_probs=278.1
Q ss_pred cccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcc-cchhh--hhhcCCCc
Q 001393 195 GYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSV-ATKEL--TKSFGWDT 271 (1087)
Q Consensus 195 g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v-~~~~l--~~~~~~~~ 271 (1087)
|++||.|+||||||||+||+|+++|+||+++++........+..++.++|+.||..|+.+.... .+..+ ...++|..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDS 80 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCCC
Confidence 7999999999999999999999999999999987433344456789999999999999875433 33322 46677888
Q ss_pred cCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHHHHHhhc
Q 001393 272 YDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKY 351 (1087)
Q Consensus 272 ~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~e~L~~~ 351 (1087)
+..+.||||+||+..|++.|++++++....+.+.++|+|.+.+.++|..|+..+.+.++|++|+|++++..+++++|+.|
T Consensus 81 ~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~ 160 (334)
T cd02659 81 LNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAY 160 (334)
T ss_pred CCcccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCCCCCHHHHHHHh
Confidence 89999999999999999999999987777788999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCcccccccCe-eeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCc-
Q 001393 352 VEVERLEGDNKYHAEEHGL-QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDA- 429 (1087)
Q Consensus 352 ~~~E~l~g~n~y~C~~c~~-~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~- 429 (1087)
+.+|.++|.|+|.|+.|++ +.+.++..|.++|++|+|||+||.|+..++...|+++.|+||..||| .+|+....
T Consensus 161 ~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl----~~~~~~~~~ 236 (334)
T cd02659 161 VQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDM----EPYTEKGLA 236 (334)
T ss_pred cCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecC----ccccccccc
Confidence 9999999999999999985 48999999999999999999999999888889999999999999999 67765432
Q ss_pred --------CCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCC
Q 001393 430 --------DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFN 501 (1087)
Q Consensus 430 --------~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~ 501 (1087)
.......|+|+|||+|.|+.++|||+||+|...+++||+|||+.|+++++++|++.+|||.+.......+
T Consensus 237 ~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~-- 314 (334)
T cd02659 237 KKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSG-- 314 (334)
T ss_pred cccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCcccccccccc--
Confidence 2345688999999999999999999999998768999999999999999999999999997542110000
Q ss_pred CCCcccccCCceEEEEEEeec
Q 001393 502 NTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 502 ~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
.....++.+||||||+|++
T Consensus 315 --~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 315 --PRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred --ccccccccceEEEEEEEeC
Confidence 1123456789999999976
No 4
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=100.00 E-value=2.1e-57 Score=493.18 Aligned_cols=249 Identities=40% Similarity=0.731 Sum_probs=186.3
Q ss_pred ceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEeecCCCCCCCCCCCCCCCcEEEEEEeecCC
Q 001393 621 LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPE 700 (1087)
Q Consensus 621 ~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~illFlK~fD~~ 700 (1087)
++|||.|.+|+|+|.||+.|+.+.+.++||+++...... +.++++||||++.+.......++...+++||||||||||.
T Consensus 1 ~~RlW~~~~R~N~T~Rp~~p~~~~~~~~tl~~~~~~~~~-~~~~~~lflE~~~~~~~~~~~~~~~~~~~iLlFlK~fDp~ 79 (249)
T PF12436_consen 1 RFRLWRMVNRQNKTLRPDTPLPEEDEDMTLEEVRNKDSN-KQSELRLFLEEASPNSPSEPLPPYDPSDDILLFLKYFDPE 79 (249)
T ss_dssp GEEEEEEEE-CTTBEEE----CCHHCTSBCHHHHTS--S----SEEEEEEE--HHTTT-------TTTEEEEEEEEEETT
T ss_pred CEEEEEEECCCCCCCCCCCcCCcccccccHHHHhhcccc-cccccEEEEeccCcccccccCCCCCCCCcEEEEEEeeCCC
Confidence 689999999999999999999888889999999976554 5579999999975333333455677888999999999999
Q ss_pred CCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeCCCCC
Q 001393 701 KGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLE 780 (1087)
Q Consensus 701 ~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~~~~ 780 (1087)
+|+|+|+||++|+++++|++|+|.|+++||||+||+|.|||||| |+ +|++|+++.||.++||+||||||||+..+.+
T Consensus 80 ~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~--~~-~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~ 156 (249)
T PF12436_consen 80 TQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIK--PN-MIEPIDPNQTFEKAELQDGDIICFQRAPSED 156 (249)
T ss_dssp TTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEE--TT-EEEE--SSSBHHHTT--TTEEEEEEE--GG-
T ss_pred CCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEec--cc-eeeEcCCCCchhhcccCCCCEEEEEeccccc
Confidence 99999999999999999999999999999999999999999998 76 6699999999999999999999999998766
Q ss_pred CccCCCCCCHHHHHHHhhceeEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCC
Q 001393 781 SEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQ 860 (1087)
Q Consensus 781 ~~~~~~y~~v~~yy~~L~nr~~v~f~~~~~~~~~~f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr~~~~~~~~~~~~~~ 860 (1087)
......|+||++||+||+||+.|+|++...+.+++|+||||++|+|+|||++||++||+ ||++||||++++++++|+..
T Consensus 157 ~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~-dP~~lr~~~~~~~~~~P~~~ 235 (249)
T PF12436_consen 157 LDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNV-DPEHLRFFTVNPYSGKPKSQ 235 (249)
T ss_dssp -GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS--GGGEEEE---TTS-S---S
T ss_pred cccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-ChHHEEEEEeccCCCCCCCc
Confidence 67788999999999999999999999999988889999999999999999999999997 79999999999999999988
Q ss_pred CccccCcchHHHhh
Q 001393 861 PIKYRGVEHLSDML 874 (1087)
Q Consensus 861 ~~~~~~~~~l~~~l 874 (1087)
+++++.++||+|||
T Consensus 236 ~~r~~~~~tL~dil 249 (249)
T PF12436_consen 236 PIRYSDNGTLKDIL 249 (249)
T ss_dssp B--TT--S-HHHHS
T ss_pred cccCCCCCcHHHhC
Confidence 88888899999997
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-56 Score=505.08 Aligned_cols=308 Identities=33% Similarity=0.543 Sum_probs=262.5
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCC----------CCCCCHHHHHHHHHHHHhcCC-Ccccchhhhhh
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND----------LPSGSIPLALQSLFYKLQYND-TSVATKELTKS 266 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~----------~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l~~~ 266 (1087)
||.|+||||||||+||+|+++|+||++++........ ....+++++|++||.+|+.+. .+++|..|.++
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999876643210 123579999999999999864 67899999999
Q ss_pred cCCCccCccccccHHHHHHHHHHHHHHHhcC---CCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCC
Q 001393 267 FGWDTYDSFMQHDVQELNRVLCEKLEDKMKG---TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRD 343 (1087)
Q Consensus 267 ~~~~~~~~~~QqDa~Efl~~Lld~Le~~~~~---~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~s 343 (1087)
+++ ..++||||+||+..|||.|+++++. ....+.+.++|+|++.+.++|..|++.+.+.|+|++|+|++++..+
T Consensus 81 l~~---~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~s 157 (324)
T cd02668 81 LGL---DTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKT 157 (324)
T ss_pred hCC---CCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecccCC
Confidence 864 4678999999999999999998874 3345788999999999999999999999999999999999999999
Q ss_pred HHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCC
Q 001393 344 VYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENG 422 (1087)
Q Consensus 344 L~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~ 422 (1087)
|+++|+.|+.+|.++|+|+|.|+.|+ +++|.|+..|.++|++|+|||+||.||..++...|+++.|+||..||| +
T Consensus 158 l~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl----~ 233 (324)
T cd02668 158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDM----G 233 (324)
T ss_pred HHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEec----h
Confidence 99999999999999999999999997 678999999999999999999999999888889999999999999999 7
Q ss_pred CCCCCCcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCC
Q 001393 423 KYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFN 501 (1087)
Q Consensus 423 ~~l~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~ 501 (1087)
+|+.... ..+..|+|+|||+|.| ++++|||+||+|+..+++||+|||+.|++++++.+.+...++..... .+
T Consensus 234 ~~~~~~~--~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~-----~~ 306 (324)
T cd02668 234 EYLAESD--EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPR-----KS 306 (324)
T ss_pred hhccccc--CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccc-----cc
Confidence 8876543 3467899999999999 58999999999997678999999999999999988654322211000 00
Q ss_pred CCCcccccCCceEEEEEE
Q 001393 502 NTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 502 ~~~~~~~~~~~AYmL~Y~ 519 (1087)
........+.+||||||+
T Consensus 307 ~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 307 EIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccCCCccccCceEEEEeC
Confidence 000112346799999995
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.8e-55 Score=496.54 Aligned_cols=286 Identities=31% Similarity=0.447 Sum_probs=246.0
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcccchh-hhhhcCCCccCcc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYN-DTSVATKE-LTKSFGWDTYDSF 275 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s-~~~v~~~~-l~~~~~~~~~~~~ 275 (1087)
||.|+||||||||+||+|+++|+||+++++..... .....++..+|+.+|..|..+ ..++.+.. +..+...+.+..+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~~~~f~~~ 79 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPG 79 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhcccccCCC
Confidence 89999999999999999999999999999877532 223457889999999999875 45566655 6665555677888
Q ss_pred ccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHHHHHhhccceE
Q 001393 276 MQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVE 355 (1087)
Q Consensus 276 ~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~e~L~~~~~~E 355 (1087)
.|||||||++.||+.|+ +.|.++|+|++.+.++|.+|++.+.+.|+|.+|+|+|+ +|+++|+.|+.+|
T Consensus 80 ~QqDa~EFl~~lLd~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E 147 (327)
T cd02664 80 SQQDCSEYLRYLLDRLH---------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP---SVQDLLNYFLSPE 147 (327)
T ss_pred CcCCHHHHHHHHHHHHH---------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---CHHHHHHHhcCee
Confidence 99999999999999998 36889999999999999999999999999999999998 8999999999999
Q ss_pred EecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCC-------
Q 001393 356 RLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSP------- 427 (1087)
Q Consensus 356 ~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~------- 427 (1087)
.++|+|+|.|++|+ +++|.|+..|.++|+||+|||+||.||..++...|+++.|.||..||| ..++..
T Consensus 148 ~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl----~~~~~~~~~~~~~ 223 (327)
T cd02664 148 KLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSL----PVRVESKSSESPL 223 (327)
T ss_pred EccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEec----Ccccccccccccc
Confidence 99999999999997 578999999999999999999999999988889999999999999999 555421
Q ss_pred ----------CcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCC--------------------CCCeEEeeCceeEE
Q 001393 428 ----------DADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL--------------------SDQWYKFDDERVTK 476 (1087)
Q Consensus 428 ----------~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~--------------------~~~W~~fnD~~Vt~ 476 (1087)
......+..|+|+|||+|.| ++++|||+||+|... ++.||+|||+.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~ 303 (327)
T cd02664 224 EKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTF 303 (327)
T ss_pred ccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEE
Confidence 01112467999999999999 589999999999853 37999999999999
Q ss_pred ecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEE
Q 001393 477 EDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 477 vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (1087)
++.++|.+-. |+ ..+.+||||||+
T Consensus 304 ~~~~~v~~~~-~~------------------~~~~~aYlLfY~ 327 (327)
T cd02664 304 SSFESVQNVT-SR------------------FPKDTPYILFYE 327 (327)
T ss_pred CCHHHHHHhh-CC------------------CCCCCEEEEEeC
Confidence 9999997521 11 123699999995
No 7
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-54 Score=490.07 Aligned_cols=276 Identities=31% Similarity=0.552 Sum_probs=245.7
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCC---CcccchhhhhhcCC--Ccc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYND---TSVATKELTKSFGW--DTY 272 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~---~~v~~~~l~~~~~~--~~~ 272 (1087)
||.|+||||||||+||+|++ .++.++|+.||.+|+.+. ..++|..|.+++++ +.|
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f 60 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELF 60 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCC
Confidence 89999999999999999988 468899999999999853 46899999999874 578
Q ss_pred CccccccHHHHHHHHHHHHHHHhcCC-----------------CcccccccccceEEeeeEEeeceeeeceeeeeeeeee
Q 001393 273 DSFMQHDVQELNRVLCEKLEDKMKGT-----------------VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ 335 (1087)
Q Consensus 273 ~~~~QqDa~Efl~~Lld~Le~~~~~~-----------------~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~ 335 (1087)
..++||||+||++.|||.|+++++.. ...+.|.++|+|++.+.++|..|++.+.+.|+|++|+
T Consensus 61 ~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Ls 140 (300)
T cd02663 61 DNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLS 140 (300)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEec
Confidence 89999999999999999999988632 2346789999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCcc
Q 001393 336 LDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ 414 (1087)
Q Consensus 336 L~v~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~ 414 (1087)
|+|++..+|++||+.|+++|.++|+|+|.|++|+ +++|.|+..|.++|++|+|||+||.|+...+...|+++.|.||.+
T Consensus 141 l~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ 220 (300)
T cd02663 141 IDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLE 220 (300)
T ss_pred cCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcE
Confidence 9999999999999999999999999999999997 688999999999999999999999999776778999999999999
Q ss_pred ccCCccCCCCCCCCcCCCCCccEEEEEEEEEecc-cCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCC
Q 001393 415 LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEEL 493 (1087)
Q Consensus 415 Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~ 493 (1087)
|+| ..+.+. .......|+|+|||+|.|+ +++|||+||+|. +++||+|||+.|++++.++|. +.+|+..
T Consensus 221 L~~----~~~~~~--~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v~-~~~~~~~-- 289 (300)
T cd02663 221 LRL----FNTTDD--AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVE-EFFGDSP-- 289 (300)
T ss_pred Eec----cccccc--cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHHH-HhcCCCC--
Confidence 999 555322 1234579999999999995 899999999999 899999999999999988885 4566642
Q ss_pred CCCCCCCCCCCcccccCCceEEEEEE
Q 001393 494 PPTNPGFNNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (1087)
.+.+||||||+
T Consensus 290 ---------------~~~~aYiLfY~ 300 (300)
T cd02663 290 ---------------NQATAYVLFYQ 300 (300)
T ss_pred ---------------CCCceEEEEeC
Confidence 24699999995
No 8
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-55 Score=498.85 Aligned_cols=298 Identities=27% Similarity=0.468 Sum_probs=262.9
Q ss_pred ccCCCCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCC-CCCCCHHHHHHHHHHHHhcCCC-cccchhh
Q 001393 186 WSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND-LPSGSIPLALQSLFYKLQYNDT-SVATKEL 263 (1087)
Q Consensus 186 ~~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~-~~~~~~~~~Lq~Lf~~l~~s~~-~v~~~~l 263 (1087)
|.|+.....| .||.|+|||||+||+||||.++|++.++++........ ....|++|+++.+......+.. +++|..+
T Consensus 99 ~~~~~~~~~~-~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i 177 (545)
T KOG1865|consen 99 LSSDRPAAVG-AGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPGHPISPSQI 177 (545)
T ss_pred ccccccccCC-cceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCCCccChHHH
Confidence 3555555555 89999999999999999999999999999864432221 2457999999999887776654 9999988
Q ss_pred hhhcCC--CccCccccccHHHHHHHHHHHHHHHhcC--------CCcccccccccceEEeeeEEeeceeeeceeeeeeee
Q 001393 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKG--------TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYD 333 (1087)
Q Consensus 264 ~~~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~--------~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~ 333 (1087)
+..+.. ..|..+.|.||||||+.++|.|+...-+ ....+.+.++|+|.+++.++|.+|.++|.++|+.++
T Consensus 178 ~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~d 257 (545)
T KOG1865|consen 178 LSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLD 257 (545)
T ss_pred HHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCCcccccccccc
Confidence 876642 5678889999999999999999988721 224568999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecC
Q 001393 334 LQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFP 412 (1087)
Q Consensus 334 L~L~v~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP 412 (1087)
|+|.|....+|++||+.|+.+|.|+|+|+|.|++|+ +++|.|+..|.++|+||+||||||+. +.+.||++.|.||
T Consensus 258 ltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fP 333 (545)
T KOG1865|consen 258 LTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFP 333 (545)
T ss_pred eEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----CcccccccccCCc
Confidence 999999999999999999999999999999999996 78999999999999999999999984 6788999999999
Q ss_pred ccccCCccCCCCCCCCcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCC
Q 001393 413 LQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEE 491 (1087)
Q Consensus 413 ~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~ 491 (1087)
+.||| .||++.+. ..+..|.|+|||||.| +.++|||+||||.. +|.||++||+.|+.++.+.|+.
T Consensus 334 E~LDl----~PyMS~~~--e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~Wy~~DDS~V~~~~~~~VLs------- 399 (545)
T KOG1865|consen 334 ETLDL----QPYMSQPN--EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQWYKMDDSEVTQSSIESVLS------- 399 (545)
T ss_pred ccccc----cccccCCC--CCCceEEEEEEEEeccccccCCceEEEEEcC-CCceEEccCceeeeccccceec-------
Confidence 99999 99999554 3578999999999999 79999999999997 8899999999999999999974
Q ss_pred CCCCCCCCCCCCCcccccCCceEEEEEEee
Q 001393 492 ELPPTNPGFNNTPFKFTKYSNAYMLVYIRE 521 (1087)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~ 521 (1087)
..||||||.|+
T Consensus 400 -------------------q~AYmLfY~R~ 410 (545)
T KOG1865|consen 400 -------------------QQAYILFYARK 410 (545)
T ss_pred -------------------ccceEEEEEee
Confidence 38999999998
No 9
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.1e-54 Score=485.88 Aligned_cols=284 Identities=29% Similarity=0.531 Sum_probs=240.6
Q ss_pred CCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHh---cC-CCcccchhhhh
Q 001393 190 SKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQ---YN-DTSVATKELTK 265 (1087)
Q Consensus 190 s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~---~s-~~~v~~~~l~~ 265 (1087)
.+..+|++||.|+||||||||+||+|+++|+||+.++++... ......+|.+|..++ .+ .....|..|+.
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~------~~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~ 91 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL------ISSVEQLQSSFLLNPEKYNDELANQAPRRLLN 91 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc------cCcHHHHHHHHHHHHHHHhhcccccCHHHHHH
Confidence 356789999999999999999999999999999999876521 122345666665443 22 23456888888
Q ss_pred hcCC--CccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC--
Q 001393 266 SFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC-- 341 (1087)
Q Consensus 266 ~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~-- 341 (1087)
.+++ +.+..+.||||+||++.|||.|+. .+.++|+|.+.+.++|.+|++.+.+.|+|++|+|+|++.
T Consensus 92 ~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~---------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~ 162 (332)
T cd02671 92 ALREVNPMYEGYLQHDAQEVLQCILGNIQE---------LVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESEL 162 (332)
T ss_pred HHHHhccccCCccccCHHHHHHHHHHHHHH---------HHHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCcc
Confidence 8874 568889999999999999999984 577899999999999999999999999999999999854
Q ss_pred -----------------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccc----
Q 001393 342 -----------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMR---- 399 (1087)
Q Consensus 342 -----------------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~---- 399 (1087)
.+|++||+.|+++|.++|+|+|.|+.|+ +++|.|+..|.++|+||+|||+||.++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~ 242 (332)
T cd02671 163 SKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY 242 (332)
T ss_pred cccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeecccccccccc
Confidence 4899999999999999999999999996 689999999999999999999999986432
Q ss_pred cceeecCceEecCccccCCccCCCCCCCCcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCCCCCeEEeeCceeEEec
Q 001393 400 DAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (1087)
Q Consensus 400 ~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs 478 (1087)
+...|+++.|.||..||+ .++... .....|+|+|||+|.| +.++|||+|||| ||+|||+.|++++
T Consensus 243 ~~~~Ki~~~v~fp~~L~~----~~~~~~----~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~fdD~~V~~~~ 308 (332)
T cd02671 243 GGLSKVNTPLLTPLKLSL----EEWSTK----PKNDVYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTE 308 (332)
T ss_pred CCceecCccccCcccccc----ccccCC----CCCCeEEEEEEEEEcCCCCCCCeEEEEEE------EEEEcCcceEEcc
Confidence 457899999999999999 555432 2467899999999999 589999999999 9999999999999
Q ss_pred HHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEE
Q 001393 479 VKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 479 ~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (1087)
++++.+...|... ...+||||||.
T Consensus 309 ~~~~~~~~~~~~~-----------------~~~~aYiLfY~ 332 (332)
T cd02671 309 EKDFLEALSPNTS-----------------STSTPYLLFYK 332 (332)
T ss_pred HHHHHhhcCCCCC-----------------CCCceEEEEEC
Confidence 9999776444321 24699999994
No 10
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-54 Score=483.00 Aligned_cols=468 Identities=27% Similarity=0.441 Sum_probs=339.2
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCC
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWD 270 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~ 270 (1087)
....||+||.|+..|||+|+.+|+|+.+|.||+.+|..+ +.++.++.|+++|||.
T Consensus 82 ~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~-------------------------~~~~et~dlt~sfgw~ 136 (1203)
T KOG4598|consen 82 ENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE-------------------------NDSLETKDLTQSFGWT 136 (1203)
T ss_pred cCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC-------------------------cccccchhhHhhcCCC
Confidence 456789999999999999999999999999999998322 2346788999999999
Q ss_pred ccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC------CCH
Q 001393 271 TYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDV 344 (1087)
Q Consensus 271 ~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~------~sL 344 (1087)
+.+.++|||+||++++++|.|+-+.+++..++.|.+++.|+|..++.|..|+.++.+.+.|++|+|+|++- .++
T Consensus 137 s~ea~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~si 216 (1203)
T KOG4598|consen 137 SNEAYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSV 216 (1203)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999753 479
Q ss_pred HHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCC
Q 001393 345 YASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGK 423 (1087)
Q Consensus 345 ~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 423 (1087)
+++|..|+++|.|+|.|+|-|++|+ +++|.|+..|+++|-+|.||||||.||.++..++|+|+++.||..|||+.|..+
T Consensus 217 eeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~ 296 (1203)
T KOG4598|consen 217 EEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNK 296 (1203)
T ss_pred HHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhh
Confidence 9999999999999999999999996 799999999999999999999999999999999999999999999999643100
Q ss_pred ---------C----------------C-CCC----------------------------------cCCCCCccEEEEEEE
Q 001393 424 ---------Y----------------L-SPD----------------------------------ADRSVRNLYTLHSVL 443 (1087)
Q Consensus 424 ---------~----------------l-~~~----------------------------------~~~~~~~~Y~L~gVV 443 (1087)
+ + +++ ...+++..|+|+||.
T Consensus 297 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~im 376 (1203)
T KOG4598|consen 297 EKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVM 376 (1203)
T ss_pred ccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhh
Confidence 0 0 000 013467899999999
Q ss_pred EEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeecc
Q 001393 444 VHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (1087)
Q Consensus 444 vH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (1087)
+|+|++.+|||+||||+..++.||+|||.+|+.++..++ +..|||... ++ ...+++||||+|+|.+.
T Consensus 377 ihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i-~~sfgg~~~------~~------~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 377 VHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEI-EKSFGGHPS------GW------NQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred eecCCCCCceeeeeecccCcCceEEecCccccccCHHHH-HHhhCCCCC------Cc------cccCcchhhhhhhhcCc
Confidence 999999999999999999899999999999999998876 789999642 11 23457999999999987
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccceeeeecCChhHHhhccccceecccCCC----CceEEEEe
Q 001393 524 KDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHD----KVRSFRVQ 599 (1087)
Q Consensus 524 ~~~~l~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~~~~~~ 599 (1087)
..+-+- +...+.|+|++..+.+-..+++.+..++ -.|+- .+.+.-...+.-- .+|- .++ +.....|.
T Consensus 444 krn~~~-~~~~~~p~hik~~~~k~~~~e~~~~~~~-~r~~s-~~~~~~~~~y~~~----~~~~--~p~~k~~~~t~~~is 514 (1203)
T KOG4598|consen 444 KRNARF-ILSNQLPQHIKDSQEKWKRLEREAEDER-LRKLS-LIQVYVTINYPFP----SVVT--LPDKKQLDLTKTEIS 514 (1203)
T ss_pred ccccce-eecccchHHHHHHHHHHHHHHHHHHHhh-hceee-EEEEEeeccCCCc----eEEE--CCchhhccceeeeee
Confidence 665433 3467899999987654433322222111 22322 1222222211000 0011 111 12344566
Q ss_pred ccccHHHHHHH----HHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEeecCC
Q 001393 600 KQTSFMAFKEE----IAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGP 675 (1087)
Q Consensus 600 ~~~~~~~~~~~----~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~ 675 (1087)
+++++.-+... +..+-..|..++|+..+... -+++.- .+. +..++.+.+.+- ..+-.+.+.||+.-..
T Consensus 515 ~~~~i~~v~~~a~e~~n~~~~~p~s~~~~~~~~~~-~~s~~~--~~~-s~~d~~~~~~~~----~~~y~~~f~l~~r~~~ 586 (1203)
T KOG4598|consen 515 REMPIKNVFNHAFEFFNERANLPFTKNSARLIYVE-HGSLMM--DFK-SKADMNVNHGEP----GSMYGVHFILDVRIAS 586 (1203)
T ss_pred ccccHHHHHHHHHHHhhhhhcCCcccceeEEEeec-ccHHHH--hhh-hccCcccccCCc----ccccceeEEEEEeecc
Confidence 77777665433 33444456677666554321 112110 000 111223333221 1112467788886443
Q ss_pred CCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCC
Q 001393 676 DLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSK 717 (1087)
Q Consensus 676 ~~~~~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~ 717 (1087)
.+-|+ +.+..|.+++---|..+....+---+|+....+
T Consensus 587 ~~f~v----~~~n~it~~v~~vd~~~~~~~~~~~v~~~a~e~ 624 (1203)
T KOG4598|consen 587 SFFPV----DIKNKITIKVQRVDIGKKTTANELIVVVDANEK 624 (1203)
T ss_pred ccccc----cCCCCcEEEEEEEeccccccCCceEEEEccchH
Confidence 33222 234457777666677666665555555554433
No 11
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-52 Score=473.85 Aligned_cols=288 Identities=28% Similarity=0.421 Sum_probs=248.3
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCC--Ccc-
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE--NDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGW--DTY- 272 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~--~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~--~~~- 272 (1087)
||.|+||||||||+||+|+++|+||++++...... ......++.++|++||..|+.+..+++|.+|...++. +.+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 89999999999999999999999999998765421 1223467999999999999998889999999887742 333
Q ss_pred -----CccccccHHHHHHHHHHHHHHHhcC-CCcccccccccceEEeeeEEeecee-eeceeeeeeeeeeeecCCC---C
Q 001393 273 -----DSFMQHDVQELNRVLCEKLEDKMKG-TVVEGTIQQLFEGHHMNYIECINVD-YKSTRKESFYDLQLDVKGC---R 342 (1087)
Q Consensus 273 -----~~~~QqDa~Efl~~Lld~Le~~~~~-~~~~~~i~~lF~g~~~~~i~C~~c~-~~s~~~e~f~~L~L~v~~~---~ 342 (1087)
..++||||+||+..||+.|++++++ ....+.|.++|+|++.+.++|.+|+ ..+.+.|+|++|+|++++. .
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~ 160 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVN 160 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccc
Confidence 4559999999999999999999874 2345689999999999999999999 7999999999999999876 6
Q ss_pred CHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccC
Q 001393 343 DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDREN 421 (1087)
Q Consensus 343 sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~ 421 (1087)
+|+++|+.+++++.. ..|+.|+ ...+.|+..|.++|++|+|||+||.|+...+...|+++.|+||.+|||
T Consensus 161 ~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl---- 231 (305)
T cd02657 161 YLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDL---- 231 (305)
T ss_pred cHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEec----
Confidence 899999999986654 3577776 566789999999999999999999999887888999999999999999
Q ss_pred CCCCCCCcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCC
Q 001393 422 GKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGF 500 (1087)
Q Consensus 422 ~~~l~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~ 500 (1087)
.+|+. .+..|+|+|||+|.| ++++|||+||+|...+++||+|||+.|++++.++|.+. +||+.
T Consensus 232 ~~~~~------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~-~~~~~--------- 295 (305)
T cd02657 232 YELCT------PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKL-SGGGD--------- 295 (305)
T ss_pred ccccC------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhh-cCCCC---------
Confidence 77775 346899999999999 58999999999997569999999999999999998754 44421
Q ss_pred CCCCcccccCCceEEEEEE
Q 001393 501 NNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 501 ~~~~~~~~~~~~AYmL~Y~ 519 (1087)
+.+||||||+
T Consensus 296 ---------~~~aYiL~Y~ 305 (305)
T cd02657 296 ---------WHIAYILLYK 305 (305)
T ss_pred ---------CceEEEEEEC
Confidence 2599999995
No 12
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.3e-52 Score=476.98 Aligned_cols=280 Identities=30% Similarity=0.488 Sum_probs=243.8
Q ss_pred cccccCCccccchhHHHHHhcChhHHHHHccCCCCC---CCCCCCCHHHHHHHHHHHHhcC--CCcccchhhhhhcC--C
Q 001393 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE---NDLPSGSIPLALQSLFYKLQYN--DTSVATKELTKSFG--W 269 (1087)
Q Consensus 197 ~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~---~~~~~~~~~~~Lq~Lf~~l~~s--~~~v~~~~l~~~~~--~ 269 (1087)
+||.|+||||||||+||+|+++|+||++++...... ...+..++.++|++||..|+.+ ..++.|..++.++. .
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 699999999999999999999999999998754321 2334578999999999999654 35678888887763 2
Q ss_pred CccCccccccHHHHHHHHHHHHHHHhcCCC--------cccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC
Q 001393 270 DTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 341 (1087)
Q Consensus 270 ~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~--------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~ 341 (1087)
+.+.++.||||+||+..||+.|++++.... ..++|.++|+|.+.+.++|..|++.+.+.|+|++|+|+++..
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~ 160 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNK 160 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeecccc
Confidence 357788999999999999999999886542 235789999999999999999999999999999999999865
Q ss_pred ---------------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeec
Q 001393 342 ---------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKI 405 (1087)
Q Consensus 342 ---------------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki 405 (1087)
.+|++||+.|+.+|.+++.+ |.|+.|+ ++++.++..|.++|++|+|||+||.|+.. +...|+
T Consensus 161 ~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~ 238 (328)
T cd02660 161 STPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKI 238 (328)
T ss_pred ccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC-CCCcCC
Confidence 78999999999999999888 9999998 46899999999999999999999999865 567899
Q ss_pred CceEecCccccCCccCCCCCCCC-------cCCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEec
Q 001393 406 NDRYEFPLQLDLDRENGKYLSPD-------ADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (1087)
Q Consensus 406 ~~~v~fP~~Ldl~~~~~~~l~~~-------~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs 478 (1087)
++.|.||.+||| .+|+..+ .....+..|+|+|||+|+|+.++|||+||+|.. +++||+|||+.|++++
T Consensus 239 ~~~v~fp~~Ldl----~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~-~~~W~~~nD~~V~~~~ 313 (328)
T cd02660 239 DTYVQFPLELNM----TPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVS 313 (328)
T ss_pred CcEEeCCCEech----hhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC-CCcEEEEECCeeEECC
Confidence 999999999999 7777641 223457899999999999998999999999985 5999999999999999
Q ss_pred HHhHH
Q 001393 479 VKRAL 483 (1087)
Q Consensus 479 ~~~vl 483 (1087)
+++|+
T Consensus 314 ~~~v~ 318 (328)
T cd02660 314 EEEVL 318 (328)
T ss_pred HHHhc
Confidence 99985
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.8e-52 Score=464.74 Aligned_cols=241 Identities=32% Similarity=0.533 Sum_probs=210.9
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCcccc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (1087)
||.|+||||||||+||+|+++|+||+++++ ..+.++..+.. ..+.+..+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~---------------~P~~~~~~l~~--------------~~~~f~~~~Q 51 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE---------------TPKELFSQVCR--------------KAPQFKGYQQ 51 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH---------------CHHHHHHHHHH--------------hhHhhcCCch
Confidence 899999999999999999999999999986 11223333221 1234677899
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCC----CCCHHHHHhhccc
Q 001393 278 HDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG----CRDVYASFDKYVE 353 (1087)
Q Consensus 278 qDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~----~~sL~e~L~~~~~ 353 (1087)
|||+||+..||+.|+ +.+.++|+|++.+.+.|.+|++.+.+.|+|++|+|+++. ..+|++||+.|++
T Consensus 52 qDA~Efl~~lld~l~---------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~ 122 (279)
T cd02667 52 QDSHELLRYLLDGLR---------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTE 122 (279)
T ss_pred hhHHHHHHHHHHHHH---------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcC
Confidence 999999999999998 468899999999999999999999999999999998753 4689999999999
Q ss_pred eEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCC---cC
Q 001393 354 VERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPD---AD 430 (1087)
Q Consensus 354 ~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~---~~ 430 (1087)
+|.++|+|+|.|+.|++ |.|+..|.++|++|+|||+||.|+... ...|++..|.||.+||| ++|+..+ ..
T Consensus 123 ~E~l~~~~~~~C~~C~~--a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~~Ki~~~v~fP~~Ldl----~~~~~~~~~~~~ 195 (279)
T cd02667 123 VEILEGNNKFACENCTK--AKKQYLISKLPPVLVIHLKRFQQPRSA-NLRKVSRHVSFPEILDL----APFCDPKCNSSE 195 (279)
T ss_pred eeEecCCCcccCCccCc--eeeEeEhhhCCCeEEEEEeccccCccc-CceecCceEeCCCccch----hhccCccccccc
Confidence 99999999999999987 899999999999999999999998653 67899999999999999 7887762 23
Q ss_pred CCCCccEEEEEEEEEecccCCceEEEEEeeCC---------------------CCCeEEeeCceeEEecHHhHH
Q 001393 431 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTL---------------------SDQWYKFDDERVTKEDVKRAL 483 (1087)
Q Consensus 431 ~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~---------------------~~~W~~fnD~~Vt~vs~~~vl 483 (1087)
......|+|+|||+|.|+.++|||+||+|... ++.||+|||+.|++++.++|+
T Consensus 196 ~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~ 269 (279)
T cd02667 196 DKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVL 269 (279)
T ss_pred cCCCceEEEEEEEEEeCCCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhc
Confidence 34568999999999999889999999999754 689999999999999999985
No 14
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-49 Score=451.10 Aligned_cols=276 Identities=29% Similarity=0.477 Sum_probs=241.5
Q ss_pred cccccCCccccchhHHHHHhcChhHHHHHccCCCCC-CCCCCCCHHHHHHHHHHHHhcC-CCcccchhhhhhcC--CCcc
Q 001393 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE-NDLPSGSIPLALQSLFYKLQYN-DTSVATKELTKSFG--WDTY 272 (1087)
Q Consensus 197 ~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~-~~~~~~~~~~~Lq~Lf~~l~~s-~~~v~~~~l~~~~~--~~~~ 272 (1087)
+||.|+||||||||+||+|+++|+||+++++..... ......++.++|++++.++..+ ...+.|..+...++ ++.+
T Consensus 2 ~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~f 81 (304)
T cd02661 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKHF 81 (304)
T ss_pred CCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHhh
Confidence 799999999999999999999999999998644322 2233468999999999998865 56677877776664 4568
Q ss_pred CccccccHHHHHHHHHHHHHHHhcCCC-----------cccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC
Q 001393 273 DSFMQHDVQELNRVLCEKLEDKMKGTV-----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC 341 (1087)
Q Consensus 273 ~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~ 341 (1087)
..+.||||+||+..|++.|++++.... ..+.+.++|+|++.+.+.|..|+..+.+.++|+.|+|++++.
T Consensus 82 ~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~ 161 (304)
T cd02661 82 RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA 161 (304)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC
Confidence 888999999999999999998764322 245788999999999999999999999999999999999999
Q ss_pred CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCcc
Q 001393 342 RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRE 420 (1087)
Q Consensus 342 ~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~ 420 (1087)
.+++++|+.++.+|.++|+++|.|+.|+ ++.+.++..|.++|++|+|||+||.++ ...|+++.|.||.+|||
T Consensus 162 ~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l--- 234 (304)
T cd02661 162 DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDL--- 234 (304)
T ss_pred CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeech---
Confidence 9999999999999999999999999998 467889999999999999999999987 46799999999999999
Q ss_pred CCCCCCCCcCCCCCccEEEEEEEEEecc-cCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHH
Q 001393 421 NGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRAL 483 (1087)
Q Consensus 421 ~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl 483 (1087)
.+|+..+ ......|+|+|||+|.|+ .++|||+||+|.. +++||+|||+.|+++++++|+
T Consensus 235 -~~~~~~~--~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~~W~~~nD~~V~~v~~~~v~ 294 (304)
T cd02661 235 -SPYMSQP--NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSS-NGKWYNMDDSKVSPVSIETVL 294 (304)
T ss_pred -hhccccC--CCCCceeeEEEEEEECCCCCCCcCCEEEEECC-CCCEEEEeCCeeEECCHHHhc
Confidence 7777653 235689999999999996 4999999999984 789999999999999999985
No 15
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-51 Score=468.70 Aligned_cols=328 Identities=34% Similarity=0.579 Sum_probs=282.7
Q ss_pred cCCCCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCC----HHHHHHHHHHHHhcCC-Ccccch
Q 001393 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGS----IPLALQSLFYKLQYND-TSVATK 261 (1087)
Q Consensus 187 ~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~----~~~~Lq~Lf~~l~~s~-~~v~~~ 261 (1087)
+-.++..-|+|||+|-|+|||||+++|-|+++|.+|..+..+... .+.+.-+ +++.+|++|.+|..+. .++.|.
T Consensus 86 pVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~-td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPe 164 (944)
T KOG1866|consen 86 PVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT-TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPE 164 (944)
T ss_pred CcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc-ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 334677889999999999999999999999999999887655432 2222223 8999999999999875 678899
Q ss_pred hhhhhcC-C-CccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecC
Q 001393 262 ELTKSFG-W-DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVK 339 (1087)
Q Consensus 262 ~l~~~~~-~-~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~ 339 (1087)
.|.+.|. | ......+||||-||+..|+|.+++.+|.-.....++..|+|.......|..|-+.-+..|+|..|+|.|.
T Consensus 165 g~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~ 244 (944)
T KOG1866|consen 165 GFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR 244 (944)
T ss_pred hHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhccCCcccCccccceeeeeecc
Confidence 9999886 3 3456678999999999999999999998888888999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCC
Q 001393 340 GCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLD 418 (1087)
Q Consensus 340 ~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~ 418 (1087)
..+|+++|++|++.|.++|.|.|+|++|. |.+..|++.|++||++|.||||||.||..++..+|-|+.++||.+|||
T Consensus 245 -~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldM- 322 (944)
T KOG1866|consen 245 -HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDM- 322 (944)
T ss_pred -cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcC-
Confidence 89999999999999999999999999996 678889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCc---------------CCCCCccEEEEEEEEEecccCCceEEEEEeeCC---CCCeEEeeCceeEEecHH
Q 001393 419 RENGKYLSPDA---------------DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTL---SDQWYKFDDERVTKEDVK 480 (1087)
Q Consensus 419 ~~~~~~l~~~~---------------~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~---~~~W~~fnD~~Vt~vs~~ 480 (1087)
.||+.... ...++.+|+|+|||||+|.+++||||+||+... +++||+|||..|++++..
T Consensus 323 ---ePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n 399 (944)
T KOG1866|consen 323 ---EPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMN 399 (944)
T ss_pred ---CceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchh
Confidence 55543211 123467999999999999999999999999643 469999999999999999
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeeccccc
Q 001393 481 RALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK 526 (1087)
Q Consensus 481 ~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~~~ 526 (1087)
+...+||||+.. +.++.++ ++ .++.+||||||+|.+..+.
T Consensus 400 ~me~~cfGGey~--q~~~~~~---~r-rR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 400 EMENECFGGEYM--QMMKRMS---YR-RRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred hHHHHhhcchhh--hcccccc---hH-HHhhhhHHHHHHHhcCCCc
Confidence 999999999864 2222222 22 3788999999999987543
No 16
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-49 Score=447.35 Aligned_cols=273 Identities=24% Similarity=0.342 Sum_probs=233.2
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCC---CCCCCCCCCHHHHHHHHHHHHhcC---------------CCccc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT---TENDLPSGSIPLALQSLFYKLQYN---------------DTSVA 259 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~---~~~~~~~~~~~~~Lq~Lf~~l~~s---------------~~~v~ 259 (1087)
||.|+||||||||+||+|+++|+||++++.... .....+..++.++|++||..|+.. ..+++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999975321 112234578999999999999763 23578
Q ss_pred chhhhhhcCC--CccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeee
Q 001393 260 TKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLD 337 (1087)
Q Consensus 260 ~~~l~~~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~ 337 (1087)
|..|...+++ +.|..+.||||+||++.||+.|+++++.. ....+.++|+|.+.+.++|.+|+..+.+.|+|++|+|+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~-~~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~ 159 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN-LGLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLP 159 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc-ccCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeee
Confidence 9999988863 67888999999999999999999998642 23457899999999999999999999999999999999
Q ss_pred cCCC--------------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccce
Q 001393 338 VKGC--------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAM 402 (1087)
Q Consensus 338 v~~~--------------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~ 402 (1087)
++.. .+|+++|+.|+.+|.++ +.|+.|+ ++.|.|+..|.++|++|+|||+||.++. ....
T Consensus 160 l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~-~~~~ 234 (311)
T cd02658 160 VPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLE-NWVP 234 (311)
T ss_pred cccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecC-CCce
Confidence 8754 38999999999999997 5688787 6789999999999999999999999963 3457
Q ss_pred eecCceEecCccccCCccCCCCCCCCcCCCCCccEEEEEEEEEecc-cCCceEEEEEeeC--CCCCeEEeeCceeEEecH
Q 001393 403 VKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPT--LSDQWYKFDDERVTKEDV 479 (1087)
Q Consensus 403 ~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~--~~~~W~~fnD~~Vt~vs~ 479 (1087)
.|++..|.||..+ .+..|+|+|||+|.|+ .++|||+||+|.. .+++||+|||+.|++++.
T Consensus 235 ~Ki~~~v~~p~~l-----------------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~ 297 (311)
T cd02658 235 KKLDVPIDVPEEL-----------------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQD 297 (311)
T ss_pred EeeccccccCCcC-----------------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCc
Confidence 8999999999766 1357999999999995 8999999999986 348999999999999988
Q ss_pred HhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEE
Q 001393 480 KRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 480 ~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (1087)
.+++ ..+||||||+
T Consensus 298 ~~~~--------------------------~~~~YilfY~ 311 (311)
T cd02658 298 PPEM--------------------------KKLGYIYFYQ 311 (311)
T ss_pred cccc--------------------------CCcceEEEEC
Confidence 7773 2489999995
No 17
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-49 Score=464.18 Aligned_cols=293 Identities=23% Similarity=0.303 Sum_probs=239.1
Q ss_pred CcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCC-CCCCCCHHHHHHHHHHHHhcC---CCcccchhhhhhc
Q 001393 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEN-DLPSGSIPLALQSLFYKLQYN---DTSVATKELTKSF 267 (1087)
Q Consensus 192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~-~~~~~~~~~~Lq~Lf~~l~~s---~~~v~~~~l~~~~ 267 (1087)
..+|++||.|+||||||||+||+|+++|+||++++....... .....++.++|+.++..++.. ..+++|.+|++++
T Consensus 115 ~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l 194 (440)
T cd02669 115 YLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAV 194 (440)
T ss_pred ccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHH
Confidence 457999999999999999999999999999999987543211 123457899999999999875 3689999999888
Q ss_pred CC---CccCccccccHHHHHHHHHHHHHHHhcCC--CcccccccccceEEeeeEEeecee---------------eecee
Q 001393 268 GW---DTYDSFMQHDVQELNRVLCEKLEDKMKGT--VVEGTIQQLFEGHHMNYIECINVD---------------YKSTR 327 (1087)
Q Consensus 268 ~~---~~~~~~~QqDa~Efl~~Lld~Le~~~~~~--~~~~~i~~lF~g~~~~~i~C~~c~---------------~~s~~ 327 (1087)
.. ..+..++||||+||+++|||.|++++++. ...++|.++|+|++++.++|..|. ..+.+
T Consensus 195 ~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~ 274 (440)
T cd02669 195 SKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTS 274 (440)
T ss_pred HhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeecccccccccccccccccccceee
Confidence 53 35778899999999999999999999863 456789999999999999987654 24567
Q ss_pred eeeeeeeeeecCCCCCHH-----HHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccc
Q 001393 328 KESFYDLQLDVKGCRDVY-----ASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDA 401 (1087)
Q Consensus 328 ~e~f~~L~L~v~~~~sL~-----e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~ 401 (1087)
.++|++|+|+|++..... .++......|.|+ +|.|+.|. .+++.|+..|.++|++|+||||||.++. ..
T Consensus 275 ~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~--~~ 349 (440)
T cd02669 275 VSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN--FF 349 (440)
T ss_pred eccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEEEEecccCCC--Cc
Confidence 899999999998753211 1222222223332 37777774 5678999999999999999999999864 56
Q ss_pred eeecCceEecCcc-ccCCccCCCCCCCCc-CCCCCccEEEEEEEEEeccc-CCceEEEEEeeCCCCCeEEeeCceeEEec
Q 001393 402 MVKINDRYEFPLQ-LDLDRENGKYLSPDA-DRSVRNLYTLHSVLVHSGGV-HGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (1087)
Q Consensus 402 ~~Ki~~~v~fP~~-Ldl~~~~~~~l~~~~-~~~~~~~Y~L~gVVvH~Gs~-~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs 478 (1087)
..|+++.|+||.. ||| ++|+.++. ....+..|+|+|||+|.|+. ++|||+||+|...+|+||+|||+.|++++
T Consensus 350 ~~K~~t~V~FP~~~LDm----~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~ 425 (440)
T cd02669 350 KEKNPTIVNFPIKNLDL----SDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVL 425 (440)
T ss_pred cccCCCEEECCCCccch----hhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcC
Confidence 7899999999997 899 88886443 22457899999999999987 99999999998768999999999999999
Q ss_pred HHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEE
Q 001393 479 VKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 479 ~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (1087)
+++|+. ..||||||+
T Consensus 426 ~~~v~~--------------------------~eaYll~Y~ 440 (440)
T cd02669 426 PQLIFL--------------------------SESYIQIWE 440 (440)
T ss_pred HHHhcc--------------------------CCceEEEeC
Confidence 999853 489999995
No 18
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-47 Score=414.05 Aligned_cols=203 Identities=31% Similarity=0.511 Sum_probs=185.9
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCcccc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (1087)
||+|+||||||||+||+|+++|+||++++... .|
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~----------------------------------------------~Q 34 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL----------------------------------------------EQ 34 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH----------------------------------------------hh
Confidence 89999999999999999999999999987522 79
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeece-eeeeeeeeeeecCCC-----CCHHHHHhhc
Q 001393 278 HDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKST-RKESFYDLQLDVKGC-----RDVYASFDKY 351 (1087)
Q Consensus 278 qDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~-~~e~f~~L~L~v~~~-----~sL~e~L~~~ 351 (1087)
|||+||++.|++.|+. .+.++|.|++.+.++|..|++.+. +.|+|++|+|+++.. .+|+++|+.|
T Consensus 35 qDa~EFl~~ll~~l~~---------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~ 105 (240)
T cd02662 35 QDAHELFQVLLETLEQ---------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDF 105 (240)
T ss_pred cCHHHHHHHHHHHHHH---------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHh
Confidence 9999999999999983 477899999999999999999876 599999999999875 5899999999
Q ss_pred cceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCcCC
Q 001393 352 VEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADR 431 (1087)
Q Consensus 352 ~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~ 431 (1087)
+.+|.++| |.|++| +..|.++|++|+|||+||.||.. +...|+++.|+||..|
T Consensus 106 ~~~E~l~~---~~C~~C-------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l---------------- 158 (240)
T cd02662 106 LSTEIIDD---YKCDRC-------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL---------------- 158 (240)
T ss_pred cCcccccC---cCCCCC-------eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCCcc----------------
Confidence 99999987 889999 56799999999999999999876 7889999999999987
Q ss_pred CCCccEEEEEEEEEecccCCceEEEEEeeC--------------------CCCCeEEeeCceeEEecHHhHH
Q 001393 432 SVRNLYTLHSVLVHSGGVHGGHYYAFIRPT--------------------LSDQWYKFDDERVTKEDVKRAL 483 (1087)
Q Consensus 432 ~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~--------------------~~~~W~~fnD~~Vt~vs~~~vl 483 (1087)
....|+|+|||+|.|+.++|||+||+|.. ..++||+|||+.|+++++++|+
T Consensus 159 -~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~ 229 (240)
T cd02662 159 -PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVL 229 (240)
T ss_pred -CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHh
Confidence 24679999999999988999999999986 3489999999999999999995
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-46 Score=397.16 Aligned_cols=220 Identities=31% Similarity=0.541 Sum_probs=195.7
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCcccc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (1087)
||.|.|||||+|++.|+|+. +|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~Q 22 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS----------------------------------------------------------QQ 22 (228)
T ss_pred CccccCcchhHHHHHHHHHH----------------------------------------------------------HH
Confidence 89999999999999999987 59
Q ss_pred ccHHHHHHHHHHHHHHHhcCC--------CcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHHHHHh
Q 001393 278 HDVQELNRVLCEKLEDKMKGT--------VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFD 349 (1087)
Q Consensus 278 qDa~Efl~~Lld~Le~~~~~~--------~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~e~L~ 349 (1087)
|||+||++.|||.|++.++.. ...+.|.++|+|++.+.+.| |+..+.+.|+|++|+|+|++..+|++||+
T Consensus 23 QDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e~L~ 100 (228)
T cd02665 23 QDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHECLE 100 (228)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHHHHH
Confidence 999999999999999999743 24568999999999976666 78889999999999999999999999999
Q ss_pred hccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCc
Q 001393 350 KYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDA 429 (1087)
Q Consensus 350 ~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~ 429 (1087)
.++.+|.+++++.+. ...+.++..|.++|++|+|||+||.|+. +...|++++|+||.+|.
T Consensus 101 ~~~~ee~l~~~~~~~-----~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l~------------- 160 (228)
T cd02665 101 AAMFEGEVELLPSDH-----SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQIIQ------------- 160 (228)
T ss_pred Hhhhhcccccccccc-----hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCccC-------------
Confidence 999999998855432 2346677789999999999999999975 56799999999998872
Q ss_pred CCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCccccc
Q 001393 430 DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTK 509 (1087)
Q Consensus 430 ~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~ 509 (1087)
...|+|+|||+|.|++++|||+||+|+..+++||+|||+.|++++.++|+.++|||.+
T Consensus 161 ----~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~------------------ 218 (228)
T cd02665 161 ----QVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGR------------------ 218 (228)
T ss_pred ----CceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCC------------------
Confidence 2479999999999999999999999987789999999999999999999999999864
Q ss_pred CCceEEEEEE
Q 001393 510 YSNAYMLVYI 519 (1087)
Q Consensus 510 ~~~AYmL~Y~ 519 (1087)
+.+||||||+
T Consensus 219 ~~~AYiLfYv 228 (228)
T cd02665 219 NPSAYCLMYI 228 (228)
T ss_pred CCceEEEEEC
Confidence 2599999995
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.6e-47 Score=428.26 Aligned_cols=268 Identities=28% Similarity=0.426 Sum_probs=228.1
Q ss_pred cccccCCccccchhHHHHHhcChhHHHHHccCCCCCC--------------CC-------CCCCHHHHHHHHHHHHhcCC
Q 001393 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEN--------------DL-------PSGSIPLALQSLFYKLQYND 255 (1087)
Q Consensus 197 ~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~--------------~~-------~~~~~~~~Lq~Lf~~l~~s~ 255 (1087)
+||.|+||||||||+||+||++|+||++++..+.... .. ...+++.+|++||..|+.++
T Consensus 2 vGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s~ 81 (343)
T cd02666 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHSN 81 (343)
T ss_pred CCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999998763211 00 01258899999999999876
Q ss_pred -CcccchhhhhhcCCCccCccccccHHHHHHHHHHHHHHHhcCCCc-------------ccccccccceEEeeeEEeece
Q 001393 256 -TSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV-------------EGTIQQLFEGHHMNYIECINV 321 (1087)
Q Consensus 256 -~~v~~~~l~~~~~~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~-------------~~~i~~lF~g~~~~~i~C~~c 321 (1087)
.++.|..++..+.+ .||||+||++.||+.|+.+++.... .+.|.++|.|++++.+.|..|
T Consensus 82 ~~~v~P~~~l~~l~~------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~~ 155 (343)
T cd02666 82 TRSVTPSKELAYLAL------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESM 155 (343)
T ss_pred CCccCcHHHHHhccc------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEeccc
Confidence 78899988877653 8999999999999999999986543 457999999999999999999
Q ss_pred e---eeceeeeeeeeeeeecCC----------CCCHHHHHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEE
Q 001393 322 D---YKSTRKESFYDLQLDVKG----------CRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQL 388 (1087)
Q Consensus 322 ~---~~s~~~e~f~~L~L~v~~----------~~sL~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i 388 (1087)
+ ..+.+.|+|++|+|+|+. ..+|++||+.|++.|. |.++|++|.|
T Consensus 156 ~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~----------------------~~~~P~vl~~ 213 (343)
T cd02666 156 GNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS----------------------LTKLPQRSQV 213 (343)
T ss_pred CCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh----------------------hccCCHHHHH
Confidence 7 789999999999999974 6899999999998775 8899999999
Q ss_pred EEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCcC--------------------------CCCCccEEEEEE
Q 001393 389 QLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD--------------------------RSVRNLYTLHSV 442 (1087)
Q Consensus 389 ~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~--------------------------~~~~~~Y~L~gV 442 (1087)
||+ +|.......+.+++++||...|. .+++..+.. ......|+|+||
T Consensus 214 qlq---~~~~~~~~~~~~dry~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~av 286 (343)
T cd02666 214 QAQ---LAQPLQRELISMDRYELPSSIDD----IDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAV 286 (343)
T ss_pred HHh---hcccccchheeeccccccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEE
Confidence 999 56666777888888888887777 444432211 225789999999
Q ss_pred EEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEE
Q 001393 443 LVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 443 VvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~ 519 (1087)
|+|+|+.++|||++|+|+..++.||+|||+.|++++.++++..++|+. .+||||+|+
T Consensus 287 v~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~--------------------~~pY~l~Yv 343 (343)
T cd02666 287 FIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNT--------------------ATPYFLVYV 343 (343)
T ss_pred EEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCC--------------------CCCEEEEeC
Confidence 999999899999999999877999999999999999999998877753 489999995
No 21
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=100.00 E-value=1.2e-45 Score=391.85 Aligned_cols=189 Identities=47% Similarity=0.773 Sum_probs=141.1
Q ss_pred ceEEEEEecCChhhhccCceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCC-CccEEEEEEeccEEEEe
Q 001393 882 DILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHP-NAELRLLEVFYHKIYKI 960 (1087)
Q Consensus 882 ~~l~YevL~~pl~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lrl~~v~~~k~~~~ 960 (1087)
+.||||+|+|||.|||++|++||+|+++++.++++++++|||+|||+||+++++++++++++ +++||+|++++|||+++
T Consensus 1 ~~l~YevL~i~l~ElE~kk~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~ 80 (213)
T PF14533_consen 1 DTLYYEVLDIPLKELENKKQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKI 80 (213)
T ss_dssp -EEEEEE-SS-HHHHHSB--EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEE
T ss_pred CceEEEecCCCHHHHhCceEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999874 68999999999999999
Q ss_pred cCCcccccccccccceEEEEecccccccCC-C--CCeEEEEEeeeccCcccccccccCCccEEEEecCCCCHHHHHHHHH
Q 001393 961 FAPNEKIENINDQYWTLRAEEIPEEEKNLG-P--NDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQ 1037 (1087)
Q Consensus 961 ~~~~~~i~~i~~~~~~~~~e~iP~~e~~~~-~--~~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~ 1037 (1087)
++++++|.+|++ +.++|+|+||+||+++. + ++++|+|+||+|+++++| |+||+|+|++||+|++||+|||
T Consensus 81 ~~~d~~i~~l~~-~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~h------GiPF~f~v~~gE~f~~tK~Rl~ 153 (213)
T PF14533_consen 81 LSEDEPISSLND-YITLRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTH------GIPFLFVVKPGETFSDTKERLQ 153 (213)
T ss_dssp E-TTSBGGGS---TTEEEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EE------EEEEEEEEETT--HHHHHHHHH
T ss_pred cCCCCchhhccC-cceeeeecCChHHhhcccccccceEEEEEEEecCccccC------CCCEEEEeeCCCcHHHHHHHHH
Confidence 999999999976 45899999999999886 4 689999999999999766 9999999999999999999999
Q ss_pred HHhCCCccccceeEEEEEecCC---cccccCch--hhhhhccccc
Q 001393 1038 RKLQVLDEEFSKWKFAFLSLGR---PEYLVDTD--TVFNRFQVCF 1077 (1087)
Q Consensus 1038 ~rl~v~~kef~k~Kfaiv~~~~---~~y~~d~~--~~~~~~~~~~ 1077 (1087)
+||||++|||+|||||||+.++ ++|++|++ ++++......
T Consensus 154 ~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~~~~~~ 198 (213)
T PF14533_consen 154 KRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDEIFNPD 198 (213)
T ss_dssp HHH---HHHHTT-EEEEEETTEE---EE--TT-T----GGGTS-S
T ss_pred HHhCCChhhheeEEEEEEecCCcccceeccccchhhhhhhhcCcc
Confidence 9999999999999999997555 69999988 9999887665
No 22
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-46 Score=416.80 Aligned_cols=298 Identities=30% Similarity=0.444 Sum_probs=254.9
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCC------CCCCCCCCCHHHHHHHHHHHHhcC-CCcccchhh
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT------TENDLPSGSIPLALQSLFYKLQYN-DTSVATKEL 263 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~------~~~~~~~~~~~~~Lq~Lf~~l~~s-~~~v~~~~l 263 (1087)
.++.|.+||.|+||||||||.||||.||+.+|++++.-.. .+.-.-.+.++.+...|..++... ..++.|..+
T Consensus 260 nke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~f 339 (823)
T COG5560 260 NKEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGF 339 (823)
T ss_pred HhhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHH
Confidence 3557999999999999999999999999999999974222 112223467888889998888875 468899999
Q ss_pred hhhcCC--CccCccccccHHHHHHHHHHHHHHHhcCC--------------------------------Ccccccccccc
Q 001393 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGT--------------------------------VVEGTIQQLFE 309 (1087)
Q Consensus 264 ~~~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~--------------------------------~~~~~i~~lF~ 309 (1087)
...+|. ..|.++.|||.|||+.+|||.||+.++.. ...++|.+||.
T Consensus 340 K~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFq 419 (823)
T COG5560 340 KKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQ 419 (823)
T ss_pred HHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 999884 57899999999999999999999988610 03578999999
Q ss_pred eEEeeeEEeeceeeeceeeeeeeeeeeecCCCC---------------C-------------------------------
Q 001393 310 GHHMNYIECINVDYKSTRKESFYDLQLDVKGCR---------------D------------------------------- 343 (1087)
Q Consensus 310 g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~---------------s------------------------------- 343 (1087)
|-.++...|..|+.+|.+++||++|+|++|-.. +
T Consensus 420 gmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei 499 (823)
T COG5560 420 GMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEI 499 (823)
T ss_pred HHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccce
Confidence 999999999999999999999999999885210 0
Q ss_pred --------------------------------------------------------------------------------
Q 001393 344 -------------------------------------------------------------------------------- 343 (1087)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (1087)
T Consensus 500 ~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLv 579 (823)
T COG5560 500 KVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLV 579 (823)
T ss_pred eEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001393 344 -------------------------------------------------------------------------------- 343 (1087)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (1087)
T Consensus 580 kE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy 659 (823)
T COG5560 580 KEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSY 659 (823)
T ss_pred HHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcC
Confidence
Q ss_pred -----------------HHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeec
Q 001393 344 -----------------VYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKI 405 (1087)
Q Consensus 344 -----------------L~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki 405 (1087)
|++||..|.++|.|.-...|+|+.|+ ...|+|++.++++|.+|+||||||+++ .....||
T Consensus 660 ~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~--rsfrdKi 737 (823)
T COG5560 660 DPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSV--RSFRDKI 737 (823)
T ss_pred CccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhc--ccchhhh
Confidence 89999999999999999999999996 788999999999999999999999974 4567899
Q ss_pred CceEecCcc-ccCCccCCCCCCCCcCCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHH
Q 001393 406 NDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALE 484 (1087)
Q Consensus 406 ~~~v~fP~~-Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~ 484 (1087)
.+-|+||.. |||+.+...+. +..-.|+|+||=.|.|...+|||+||+|+..+++||+|||++|+++.+++.+
T Consensus 738 ddlVeyPiddldLs~~~~~~~------~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~v- 810 (823)
T COG5560 738 DDLVEYPIDDLDLSGVEYMVD------DPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV- 810 (823)
T ss_pred hhhhccccccccccceEEeec------CcceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccc-
Confidence 999999987 99954433331 1237899999999999999999999999998999999999999999987753
Q ss_pred HhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeec
Q 001393 485 EQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 485 ~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
..+||+|||+|++
T Consensus 811 -------------------------tssaYvLFyrrk~ 823 (823)
T COG5560 811 -------------------------TSSAYVLFYRRKS 823 (823)
T ss_pred -------------------------cceeEEEEEEecC
Confidence 2489999999974
No 23
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=376.20 Aligned_cols=284 Identities=23% Similarity=0.392 Sum_probs=221.6
Q ss_pred cccccccCCccccchhHHHHHhcChhHHHHHc------cCCCCCCCCCCCCHH-HHHHHHHHHHh-cCCCcccchhhhhh
Q 001393 195 GYVGLKNQGATCYMNSLLQTLYHIPYFRKAVY------HMPTTENDLPSGSIP-LALQSLFYKLQ-YNDTSVATKELTKS 266 (1087)
Q Consensus 195 g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~------~~~~~~~~~~~~~~~-~~Lq~Lf~~l~-~s~~~v~~~~l~~~ 266 (1087)
..+||.|.|||||||++||||+.+..+...+. .+.+.......++++ ..+.-|...+. .+..+++|..+.+.
T Consensus 70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~i 149 (415)
T COG5533 70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFIDI 149 (415)
T ss_pred CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHHH
Confidence 34899999999999999999999999988442 233322222222222 22222222222 24567899999888
Q ss_pred cCC--CccCccccccHHHHHHHHHHHHHHHhcCCC-----------------------------------cccccccccc
Q 001393 267 FGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------------VEGTIQQLFE 309 (1087)
Q Consensus 267 ~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------------~~~~i~~lF~ 309 (1087)
++. +.|...+|||+|||+.+++|.|++++.+.. ..+.+.+.|.
T Consensus 150 ~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~ 229 (415)
T COG5533 150 LSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFF 229 (415)
T ss_pred HccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHh
Confidence 764 567788999999999999999999986533 1257889999
Q ss_pred eEEeeeEEeeceeeeceeeeeeeeeeeecCCCC--CHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeE
Q 001393 310 GHHMNYIECINVDYKSTRKESFYDLQLDVKGCR--DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVL 386 (1087)
Q Consensus 310 g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~--sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL 386 (1087)
|+..+...|..|++.|++..+|..|.+++.... .|+|||+.|.++|.|+|+..|.|++|+ ++.++|++.|.++|++|
T Consensus 230 gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~L 309 (415)
T COG5533 230 GQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVL 309 (415)
T ss_pred hhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceE
Confidence 999999999999999999999999999997644 599999999999999999999999998 67899999999999999
Q ss_pred EEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCC-------------cCCCCCccEEEEEEEEEecccCCce
Q 001393 387 QLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPD-------------ADRSVRNLYTLHSVLVHSGGVHGGH 453 (1087)
Q Consensus 387 ~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~-------------~~~~~~~~Y~L~gVVvH~Gs~~~GH 453 (1087)
+||++||.. .|-.|..||+ .++.... ...-.+.+|.|+|||||.|+.++||
T Consensus 310 II~i~RF~i------------~V~~~~kiD~----p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGH 373 (415)
T COG5533 310 IIHISRFHI------------SVMGRKKIDT----PQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGH 373 (415)
T ss_pred EEEeeeeeE------------EeecccccCC----CcchhccCCceecccccccCCCCCCccceeEEEEEeecceecCce
Confidence 999999973 2333444444 2222211 1123467999999999999999999
Q ss_pred EEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEee
Q 001393 454 YYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRE 521 (1087)
Q Consensus 454 Y~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~ 521 (1087)
|+++|+. ++.|+.|||+.|++++...-+ +..+||+|||.|.
T Consensus 374 Y~s~v~~--~~~W~~~dDs~vr~~~~~t~~-------------------------~~pSsYilFY~r~ 414 (415)
T COG5533 374 YFSEVKR--SGTWNVYDDSQVRKGSRTTSG-------------------------SHPSSYILFYTRS 414 (415)
T ss_pred eEEeeee--cCceEEechhheeeccceecc-------------------------cCCcceEEEEEec
Confidence 9999998 699999999999998643221 1248999999985
No 24
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-43 Score=381.72 Aligned_cols=211 Identities=34% Similarity=0.563 Sum_probs=192.8
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCcccc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (1087)
||.|.|||||+||+||+|++ .|
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~----------------------------------------------------------~Q 22 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA----------------------------------------------------------DQ 22 (230)
T ss_pred CccccCcchhhhHHHHHHHH----------------------------------------------------------hh
Confidence 89999999999999999998 69
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCC------CHHHHHhhc
Q 001393 278 HDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCR------DVYASFDKY 351 (1087)
Q Consensus 278 qDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~------sL~e~L~~~ 351 (1087)
|||+||++.|++.|+ +.+.++|+|.+.+.++|..|++.+.+.|+|+.|+|+++... +|+++|+.+
T Consensus 23 qDa~Ef~~~ll~~l~---------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~ 93 (230)
T cd02674 23 QDAQEFLLFLLDGLH---------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLF 93 (230)
T ss_pred hhHHHHHHHHHHHHh---------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHh
Confidence 999999999999998 36889999999999999999999999999999999998654 999999999
Q ss_pred cceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCc-cccCCccCCCCCCCCc
Q 001393 352 VEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDA 429 (1087)
Q Consensus 352 ~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~ 429 (1087)
+.+|.++|.+++.|++|+ ++.+.++..|.++|++|+|||+||.++. +...|++..|+||. .+|+ .+|+.. .
T Consensus 94 ~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l----~~~~~~-~ 166 (230)
T cd02674 94 TKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDL----TPYVDT-R 166 (230)
T ss_pred cCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEecccccccc----ccccCc-c
Confidence 999999999999999997 5788999999999999999999999875 56789999999996 5899 777532 2
Q ss_pred CCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhH
Q 001393 430 DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRA 482 (1087)
Q Consensus 430 ~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~v 482 (1087)
......+|+|+|||+|.|+.++|||+||+|...+++|++|||+.|++++.+++
T Consensus 167 ~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~ 219 (230)
T cd02674 167 SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSV 219 (230)
T ss_pred cCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHc
Confidence 33457899999999999977999999999997669999999999999999887
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=4.4e-40 Score=363.38 Aligned_cols=245 Identities=33% Similarity=0.584 Sum_probs=201.8
Q ss_pred ccccccCCccccchhHHHHHhcChhHHHHHccC------CCCCCCCCCCCHHHHHHHHHHHHhcC---CCcccchhhhhh
Q 001393 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHM------PTTENDLPSGSIPLALQSLFYKLQYN---DTSVATKELTKS 266 (1087)
Q Consensus 196 ~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~------~~~~~~~~~~~~~~~Lq~Lf~~l~~s---~~~v~~~~l~~~ 266 (1087)
++||.|.||||||||+||+|+++|+||+++... ..........++..+|+++|..|+.+ ...+.+..+...
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999976 22222333456999999999999986 577889888888
Q ss_pred cCC--CccCccccccHHHHHHHHHHHHHHHhcCCC-----------cccccccccceEEeeeEEeeceeeeceeeeeeee
Q 001393 267 FGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYD 333 (1087)
Q Consensus 267 ~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~ 333 (1087)
++. ..+..+.||||+||+..|++.|++++.... ..+.+.++|.+++.+.+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 863 347789999999999999999999987642 3567889999999999999999765
Q ss_pred eeeecCCCCCHHHHHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecC-
Q 001393 334 LQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFP- 412 (1087)
Q Consensus 334 L~L~v~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP- 412 (1087)
...|.++|++|+|+|+||.|+..++...|+.+.+.||
T Consensus 152 ------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~ 189 (269)
T PF00443_consen 152 ------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPL 189 (269)
T ss_dssp ------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--S
T ss_pred ------------------------------------------ccccccccceeeeccccceeccccccccccccccccCc
Confidence 4568899999999999999998888899999999999
Q ss_pred ccccCCccCCCCCCCCcC-CCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCC
Q 001393 413 LQLDLDRENGKYLSPDAD-RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEE 491 (1087)
Q Consensus 413 ~~Ldl~~~~~~~l~~~~~-~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~ 491 (1087)
.+||| .+++..+.. ......|+|+|||+|.|+.++|||+||+|...+++|++|||+.|+++++++|++.+
T Consensus 190 ~~l~l----~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~----- 260 (269)
T PF00443_consen 190 EELDL----SPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSS----- 260 (269)
T ss_dssp SEEEG----GGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGG-----
T ss_pred hhhhh----hhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhcc-----
Confidence 79999 777765432 22468999999999999999999999999976667999999999999999996432
Q ss_pred CCCCCCCCCCCCCcccccCCceEEEEE
Q 001393 492 ELPPTNPGFNNTPFKFTKYSNAYMLVY 518 (1087)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~AYmL~Y 518 (1087)
..+||||||
T Consensus 261 ------------------~~~~yll~Y 269 (269)
T PF00443_consen 261 ------------------NSTAYLLFY 269 (269)
T ss_dssp ------------------STCEEEEEE
T ss_pred ------------------CCceEEEeC
Confidence 259999999
No 26
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.9e-40 Score=355.57 Aligned_cols=230 Identities=21% Similarity=0.310 Sum_probs=185.7
Q ss_pred cccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCccccc
Q 001393 199 LKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQH 278 (1087)
Q Consensus 199 L~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Qq 278 (1087)
|.|.||.||+||.+|+|..+... .+.|..+.||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~-----------------------------------------------~~~F~~~~QQ 34 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKI-----------------------------------------------NTEFDNDDQQ 34 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhh-----------------------------------------------hhhcCCCchh
Confidence 78999999999999997543211 1356788999
Q ss_pred cHHHHHHHHHHHHHHHhcCCC----------cccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC--CCHHH
Q 001393 279 DVQELNRVLCEKLEDKMKGTV----------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC--RDVYA 346 (1087)
Q Consensus 279 Da~Efl~~Lld~Le~~~~~~~----------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~--~sL~e 346 (1087)
|||||++.|||.|++++.... ......++|+|++.+.++|..|++++.+.|+|++|+|+++.. ..+++
T Consensus 35 DAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~ 114 (245)
T cd02673 35 DAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDEL 114 (245)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcchHHH
Confidence 999999999999998774321 111234789999999999999999999999999999999874 56788
Q ss_pred HHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCC
Q 001393 347 SFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLS 426 (1087)
Q Consensus 347 ~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~ 426 (1087)
++..+.+.+.++ |.|+.|+.+.|.|+..|.++|++|+||||||.++.......|.+ .+++ .+|..
T Consensus 115 l~~~~~~~~~~e----~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~~-------~~~~----~~~~~ 179 (245)
T cd02673 115 LISNFKTWSPIE----KDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKN-------EEIM----KKYCG 179 (245)
T ss_pred HHHHhhcccccC----ccCCCCCCccceeechhhhCChhhEEeeEeeeeccccccccccc-------cccc----ccccC
Confidence 888888776665 89999998889999999999999999999998754322222222 3456 55553
Q ss_pred CCcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCC-CCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCC
Q 001393 427 PDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL-SDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTP 504 (1087)
Q Consensus 427 ~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~-~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~ 504 (1087)
....|+|+|||+|.| +.++|||+||+|... +++||+|||+.|+++++++|++.
T Consensus 180 ------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~------------------- 234 (245)
T cd02673 180 ------TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTN------------------- 234 (245)
T ss_pred ------CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhc-------------------
Confidence 346799999999999 589999999999875 68999999999999999999632
Q ss_pred cccccCCceEEEEEE
Q 001393 505 FKFTKYSNAYMLVYI 519 (1087)
Q Consensus 505 ~~~~~~~~AYmL~Y~ 519 (1087)
.+.+||||||+
T Consensus 235 ----~~~~aYiLFY~ 245 (245)
T cd02673 235 ----ARSSGYLIFYD 245 (245)
T ss_pred ----cCCceEEEEEC
Confidence 12599999995
No 27
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-40 Score=373.38 Aligned_cols=221 Identities=24% Similarity=0.367 Sum_probs=190.4
Q ss_pred CcccccccccCCccccchhHHHHHhcChhHHHHHccCCC---CCCCCCCCCHHHHHHHHHHHHhcCC-----------Cc
Q 001393 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT---TENDLPSGSIPLALQSLFYKLQYND-----------TS 257 (1087)
Q Consensus 192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~---~~~~~~~~~~~~~Lq~Lf~~l~~s~-----------~~ 257 (1087)
..+||+||+|+||+||||||+|+|+.+|.|......... .....|..++-++|.+|...|.... ..
T Consensus 303 ~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qng 382 (763)
T KOG0944|consen 303 FGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNG 382 (763)
T ss_pred cCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCC
Confidence 468999999999999999999999999999988765422 1234567899999999999998742 25
Q ss_pred ccchhhhhhcC--CCccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeee
Q 001393 258 VATKELTKSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ 335 (1087)
Q Consensus 258 v~~~~l~~~~~--~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~ 335 (1087)
++|..|...++ .+.|..++||||+||+++||+.|++...... ..+.++|...+...+.|..|+..+.+.++-+.|+
T Consensus 383 IsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~--~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~ 460 (763)
T KOG0944|consen 383 ISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL--PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQ 460 (763)
T ss_pred cCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC--CCHHHHHHhhhhhhhhhhccccccccchhheeeE
Confidence 67777777775 4789999999999999999999998765442 5688999999999999999999999999999999
Q ss_pred eecCCC------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCce
Q 001393 336 LDVKGC------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDR 408 (1087)
Q Consensus 336 L~v~~~------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~ 408 (1087)
|+|+.. .++.+||+.|+.+.+.+ |.|..|| +..|.|+..|++||++|+||++||.| .....+|+...
T Consensus 461 lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pkKld~~ 534 (763)
T KOG0944|consen 461 LPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPKKLDVS 534 (763)
T ss_pred eeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEe--cCceeeeeccc
Confidence 999753 38999999999994444 8888886 88999999999999999999999999 57789999999
Q ss_pred EecCccccCCcc
Q 001393 409 YEFPLQLDLDRE 420 (1087)
Q Consensus 409 v~fP~~Ldl~~~ 420 (1087)
++.|++||++.|
T Consensus 535 iempe~ldls~~ 546 (763)
T KOG0944|consen 535 IEMPEELDLSSY 546 (763)
T ss_pred eecchhhchhhh
Confidence 999999999643
No 28
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-41 Score=396.09 Aligned_cols=303 Identities=27% Similarity=0.462 Sum_probs=246.8
Q ss_pred CCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCC-----CCCCCCCCHHHHHHHHHHHHhcC--CCcccchh
Q 001393 190 SKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT-----ENDLPSGSIPLALQSLFYKLQYN--DTSVATKE 262 (1087)
Q Consensus 190 s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~-----~~~~~~~~~~~~Lq~Lf~~l~~s--~~~v~~~~ 262 (1087)
+....|.+||.|+|||||||++||||+.++.||...+..... ........+..+...++..++.. ..++.|..
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHH
Confidence 455678899999999999999999999999999655543110 12222345667777777777765 45678999
Q ss_pred hhhhcC--CCccCccccccHHHHHHHHHHHHHHHhcCCC-----------------------------------cccccc
Q 001393 263 LTKSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------------VEGTIQ 305 (1087)
Q Consensus 263 l~~~~~--~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------------~~~~i~ 305 (1087)
|...++ ...+.+..|||+|||+..+++.|++++.... .+..|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 998887 3566667899999999999999999886421 123478
Q ss_pred cccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC------CCHHHHHhhccceEEecCCCcccccccCeeece---ee
Q 001393 306 QLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDVYASFDKYVEVERLEGDNKYHAEEHGLQDAK---KG 376 (1087)
Q Consensus 306 ~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~------~sL~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~---k~ 376 (1087)
++|.|++++.++|..|++.+.++++|++++|+|+.. .+|++|+..|+..|.++|++.|.|+.|++.... |+
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~ 534 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKK 534 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccce
Confidence 999999999999999999999999999999999642 349999999999999999999999999865554 89
Q ss_pred eEeccCCCeEEEEEeeEEeeccccceeecCceEecCcc-ccCCccCCCCCCCCcCCCCCccEEEEEEEEEecccCCceEE
Q 001393 377 VLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYY 455 (1087)
Q Consensus 377 ~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ 455 (1087)
..|.+||++|++||+||.+|. +...|....++||.. .++ .++.....+ ....|+|+|||+|.|+.++|||+
T Consensus 535 ~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~----~~~~~~~~~--~~~~Y~L~aVv~H~Gtl~sGHYt 606 (653)
T KOG1868|consen 535 LTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADL----SPRFAEKGN--NPKSYRLYAVVNHSGTLNSGHYT 606 (653)
T ss_pred eeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhh----chhccccCC--CccceeeEEEEeccCcccCCceE
Confidence 999999999999999999874 567799999999986 555 444443332 34569999999999999999999
Q ss_pred EEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeeccccc
Q 001393 456 AFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDK 526 (1087)
Q Consensus 456 ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~~~ 526 (1087)
||++....+.|+.|||+.|+.++..++- ++.||||||.|.+..++
T Consensus 607 a~~~~~~~~~W~~fdDs~Vs~~~~~~~~--------------------------~s~aYIlFY~~~~~~~~ 651 (653)
T KOG1868|consen 607 AYVYKNEKQRWFTFDDSEVSPISETDVG--------------------------SSSAYILFYERLGIFEE 651 (653)
T ss_pred EEEeecCCCceEEecCeeeecccccccc--------------------------CCCceEEEeecCCcccc
Confidence 9999877889999999999977655441 35899999999876544
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-37 Score=336.06 Aligned_cols=238 Identities=36% Similarity=0.605 Sum_probs=200.9
Q ss_pred ccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCcccc
Q 001393 198 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ 277 (1087)
Q Consensus 198 GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~Q 277 (1087)
||.|.|||||+||+||+|++ .|
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~----------------------------------------------------------~q 22 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS----------------------------------------------------------EQ 22 (255)
T ss_pred CccccCcchHHhHHHHHHHH----------------------------------------------------------HH
Confidence 89999999999999999999 69
Q ss_pred ccHHHHHHHHHHHHHHHhcC--------CCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCC----CCCHH
Q 001393 278 HDVQELNRVLCEKLEDKMKG--------TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKG----CRDVY 345 (1087)
Q Consensus 278 qDa~Efl~~Lld~Le~~~~~--------~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~----~~sL~ 345 (1087)
|||+||+..+++.|+.++.. ....+.+.++|.|.+.+.+.|..|+..+.....+..++|+++. ..+|+
T Consensus 23 ~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~ 102 (255)
T cd02257 23 QDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLPQVSLE 102 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCCCCcHH
Confidence 99999999999999998876 3346789999999999999999998877777777777777764 47999
Q ss_pred HHHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCC
Q 001393 346 ASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYL 425 (1087)
Q Consensus 346 e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l 425 (1087)
++|+.++..+.+++.++..|..+..+.+.++..|.++|++|+|+|+||.++.. ....|++..+.||.++++ ..++
T Consensus 103 ~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~----~~~~ 177 (255)
T cd02257 103 DCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDL----SPYL 177 (255)
T ss_pred HHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeCCCcccC----cccc
Confidence 99999999999988443333332477889999999999999999999998753 567899999999999999 5665
Q ss_pred CC----CcCCCCCccEEEEEEEEEeccc-CCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCC
Q 001393 426 SP----DADRSVRNLYTLHSVLVHSGGV-HGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGF 500 (1087)
Q Consensus 426 ~~----~~~~~~~~~Y~L~gVVvH~Gs~-~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~ 500 (1087)
.. ..+......|+|+|||+|.|+. ++|||+||+|...+++||+|||+.|++++.++++.. +
T Consensus 178 ~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~--~------------ 243 (255)
T cd02257 178 SEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEF--G------------ 243 (255)
T ss_pred ccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhc--c------------
Confidence 32 2334457899999999999965 999999999997569999999999999999998642 1
Q ss_pred CCCCcccccCCceEEEEEE
Q 001393 501 NNTPFKFTKYSNAYMLVYI 519 (1087)
Q Consensus 501 ~~~~~~~~~~~~AYmL~Y~ 519 (1087)
....+||||||+
T Consensus 244 -------~~~~~~yll~Y~ 255 (255)
T cd02257 244 -------SLSSSAYILFYE 255 (255)
T ss_pred -------CCCCceEEEEEC
Confidence 123699999995
No 30
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=362.27 Aligned_cols=298 Identities=31% Similarity=0.482 Sum_probs=253.5
Q ss_pred CcccccccccCCccccchhHHHHHhcChhHHHHHccCCCC-CCCCC-CCCHHHHHHHHHHHHhcCC--Ccccchhhhhhc
Q 001393 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT-ENDLP-SGSIPLALQSLFYKLQYND--TSVATKELTKSF 267 (1087)
Q Consensus 192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~-~~~~~-~~~~~~~Lq~Lf~~l~~s~--~~v~~~~l~~~~ 267 (1087)
-..|++||.|+|+||+||++||+|.+.+..+...+..... +...+ ..++.+++.++|..++... .++++..+....
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLV 236 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHH
Confidence 4567899999999999999999999988888776543322 22333 5789999999999999854 677777776654
Q ss_pred C--CCccCccccccHHHHHHHHHHHHHHHhc--------CC---CcccccccccceEEeeeEEeeceeeeceeeeeeeee
Q 001393 268 G--WDTYDSFMQHDVQELNRVLCEKLEDKMK--------GT---VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDL 334 (1087)
Q Consensus 268 ~--~~~~~~~~QqDa~Efl~~Lld~Le~~~~--------~~---~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L 334 (1087)
- -+.+.++.|||++||+..+++.++...+ .. ...+++...|.|.+.+.+.|..|+..|...++|++|
T Consensus 237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 237 WKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred HHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 1 2456679999999999999999998871 11 136789999999999999999999999999999999
Q ss_pred eeecCCC----------CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeecccccee
Q 001393 335 QLDVKGC----------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMV 403 (1087)
Q Consensus 335 ~L~v~~~----------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~ 403 (1087)
+|+++.. ..+.+++..+...+......++.|..|+ ++.+.|+..+.++|.+|.+||+||++.......
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~- 395 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGARE- 395 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccccccccc-
Confidence 9999743 4699999999999998888999999997 789999999999999999999999987655444
Q ss_pred ecCceEecCccccCCccCCCCCCCCcC---CCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHH
Q 001393 404 KINDRYEFPLQLDLDRENGKYLSPDAD---RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVK 480 (1087)
Q Consensus 404 Ki~~~v~fP~~Ldl~~~~~~~l~~~~~---~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~ 480 (1087)
|+++.+.||..|+| .+|+..+.. +..+..|+|.|||+|+|+.++|||+||.|. .+.|++|||+.|+.++.+
T Consensus 396 ki~~~v~fp~~l~m----~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~~~~~dDs~v~~~s~~ 469 (492)
T KOG1867|consen 396 KIDSYVSFPVLLNM----KPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGGWFKCDDSTVTKVSEE 469 (492)
T ss_pred ccCcccccchhhcC----CccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEe--CCCcEEEcCeEEEEeeHH
Confidence 99999999999999 888775322 234689999999999999999999999999 699999999999999999
Q ss_pred hHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeec
Q 001393 481 RALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 481 ~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
+|++ ..||+|||.+..
T Consensus 470 eVl~--------------------------~~aylLFY~~~~ 485 (492)
T KOG1867|consen 470 EVLS--------------------------SQAYLLFYTQEQ 485 (492)
T ss_pred Hhhh--------------------------chhhheehhHHh
Confidence 9974 489999998764
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-35 Score=326.74 Aligned_cols=236 Identities=20% Similarity=0.266 Sum_probs=192.6
Q ss_pred ccCCCCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhh
Q 001393 186 WSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTK 265 (1087)
Q Consensus 186 ~~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~ 265 (1087)
+.++....|+++||.|.|.|||+||+||+|+++|+||+++.+.. .......|++++|+.||..
T Consensus 5 fdf~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~--~~~~~~~~l~~el~~lfs~--------------- 67 (268)
T cd02672 5 FDFEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIIL--VACPKESCLLCELGYLFST--------------- 67 (268)
T ss_pred ccccccccccccccccCCccchHHHHHHHHHhcHHHHHHHHhhc--ccCCcCccHHHHHHHHHHH---------------
Confidence 45677788999999999999999999999999999999855443 2344568999999999910
Q ss_pred hcCCCccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC----
Q 001393 266 SFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC---- 341 (1087)
Q Consensus 266 ~~~~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~---- 341 (1087)
=+|-|.++|++.+..+..++. ..|++.+.+.++|++|+|+++..
T Consensus 68 -------------~iq~F~~fll~~i~~~~~~~~-------------------~~C~~~s~~~~~~~~LsLpip~~~~~~ 115 (268)
T cd02672 68 -------------LIQNFTRFLLETISQDQLGTP-------------------FSCGTSRNSVSLLYTLSLPLGSTKTSK 115 (268)
T ss_pred -------------HHHHHHHHHHHHHHHHhcccC-------------------CCCCceeeccccceeeeeecCcccccc
Confidence 135588889999876543321 57899999999999999999853
Q ss_pred -CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCC----eEEEEEeeEEeeccc-----cceeecCceEe
Q 001393 342 -RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPP----VLQLQLKRFEYDFMR-----DAMVKINDRYE 410 (1087)
Q Consensus 342 -~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~----vL~i~LkRf~~d~~~-----~~~~Ki~~~v~ 410 (1087)
.++.+||+.+++.|.. +++.|+.|+ ++.|.|+..|.++|+ ||+||||||.++... ....|++..+.
T Consensus 116 ~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~ 192 (268)
T cd02672 116 ESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVS 192 (268)
T ss_pred CCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeec
Confidence 5899999999998854 568999996 689999999999999 999999999865432 23568889999
Q ss_pred cCccccCCccCCCCCCCCcCCCCCccEEEEEEEEEecc-cCCceEEEEEeeCC----CCCeEEeeCceeEEecH
Q 001393 411 FPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGG-VHGGHYYAFIRPTL----SDQWYKFDDERVTKEDV 479 (1087)
Q Consensus 411 fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs-~~~GHY~ayvr~~~----~~~W~~fnD~~Vt~vs~ 479 (1087)
||..+++ ..+.... .....+|+|+|||+|.|+ .++|||+||||... +++||.|||..|+++++
T Consensus 193 f~~~~~~----~~~~~~~--~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~ 260 (268)
T cd02672 193 PKAIDHD----KLVKNRG--QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE 260 (268)
T ss_pred ccccccc----hhhhccC--CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc
Confidence 9998877 4444332 234578999999999996 49999999999854 57999999999999864
No 32
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-36 Score=344.41 Aligned_cols=147 Identities=37% Similarity=0.565 Sum_probs=124.8
Q ss_pred HHHHHhhccceEEecCCCcccccccCe------e----------------------eceeeeEeccCCCeEEEEEeeEEe
Q 001393 344 VYASFDKYVEVERLEGDNKYHAEEHGL------Q----------------------DAKKGVLFIDFPPVLQLQLKRFEY 395 (1087)
Q Consensus 344 L~e~L~~~~~~E~l~g~n~y~C~~c~~------~----------------------~a~k~~~i~~lP~vL~i~LkRf~~ 395 (1087)
++.||.+|+..|.|.|+|+|.|+.|.+ . .|+|.+.|..+||||+||||||.-
T Consensus 680 vq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q 759 (877)
T KOG1873|consen 680 VQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQ 759 (877)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhh
Confidence 889999999999999999999999854 1 146778899999999999999987
Q ss_pred eccccceeecCceEecCccccCCccCCCCCCCC---cCCCCCccEEEEEEEEEecccCCceEEEEEeeC-----------
Q 001393 396 DFMRDAMVKINDRYEFPLQLDLDRENGKYLSPD---ADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPT----------- 461 (1087)
Q Consensus 396 d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~---~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~----------- 461 (1087)
+. .+...|.++.+.|++.+|| .+|+.-- .+......|+|+|||.|+|+.++|||+||+|..
T Consensus 760 ~~-~~~~~k~~~h~~f~E~~dL----~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 760 DI-RGRLSKLNKHVDFKEFEDL----LDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hh-hchhhcccccchHHHHHHH----HHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCcccc
Confidence 64 4558899999999999999 6665422 122256799999999999999999999999932
Q ss_pred ---------CCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEee
Q 001393 462 ---------LSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRE 521 (1087)
Q Consensus 462 ---------~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~ 521 (1087)
..|+||...|..|.++++++|+. ..||||||+|.
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLk--------------------------seAYlLFYERI 877 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDSIVREVSLDEVLK--------------------------SEAYLLFYERI 877 (877)
T ss_pred ccchhccCCCCcceEEecchheecccHHHHhh--------------------------hhhhhhheecC
Confidence 25799999999999999999985 38999999983
No 33
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=315.19 Aligned_cols=216 Identities=21% Similarity=0.323 Sum_probs=179.0
Q ss_pred ccccccCCccccchhHHHHHhcChhHHHHHccCCC---CCCCCCCCCHHHHHHHHHHHHhcCC-----Ccccchhhhhhc
Q 001393 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT---TENDLPSGSIPLALQSLFYKLQYND-----TSVATKELTKSF 267 (1087)
Q Consensus 196 ~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~---~~~~~~~~~~~~~Lq~Lf~~l~~s~-----~~v~~~~l~~~~ 267 (1087)
++||.|+||+||+||++|+|+....+...+..+.. ..-..|..++.|+|.+|...|.... ..++|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 89999999999999999999998877655433222 1234456789999999999887643 357788888887
Q ss_pred C--CCccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC---C
Q 001393 268 G--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC---R 342 (1087)
Q Consensus 268 ~--~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~---~ 342 (1087)
| .+.|..++||||+||+.+||+.|.+.... -....|.++|...+...+.|..|+..+...++...+++...+. .
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S-~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~ 461 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS-YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQ 461 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccch-hcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchh
Confidence 6 46789999999999999999999875443 3456788999999999999999999999999999999988764 4
Q ss_pred CHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCcc--ccCC
Q 001393 343 DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ--LDLD 418 (1087)
Q Consensus 343 sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~--Ldl~ 418 (1087)
++.++++.|+.+.+++ |.|+.|+ +..|.+...|++||++|++|..||.+ +.....|+...+..... ++++
T Consensus 462 di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~l--qny~v~kls~pi~~~~D~m~~~~ 534 (749)
T COG5207 462 DIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSL--QNYKVEKLSDPIEMRSDDMIKLG 534 (749)
T ss_pred hHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeec--cceeehhccCceEEccccccchh
Confidence 7999999999999998 9999995 88899999999999999999999986 45567788777776553 5554
No 34
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=335.66 Aligned_cols=297 Identities=29% Similarity=0.465 Sum_probs=253.2
Q ss_pred CCCcccccccccCCccccchhHHHHHhcChhHHHHHccC------CCCCCCCCCCCHHHHHHHHHHHHhcCCC-cccchh
Q 001393 190 SKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHM------PTTENDLPSGSIPLALQSLFYKLQYNDT-SVATKE 262 (1087)
Q Consensus 190 s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~------~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~-~v~~~~ 262 (1087)
....+|.+||.|+||||||||.+|+|.+++.++++++.. ...........+..+...+..+++.... .+.+..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 456789999999999999999999999999999888532 2222333446778888899999988765 577777
Q ss_pred hhhhcCC--CccCccccccHHHHHHHHHHHHHHHhcCCC-----------------------------cccccccccceE
Q 001393 263 LTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGH 311 (1087)
Q Consensus 263 l~~~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~ 311 (1087)
+...++. +.+.++.|||.+||+-+|+|.|++.+.... ..+.|.++|.|.
T Consensus 320 ~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~ 399 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGT 399 (842)
T ss_pred hhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecce
Confidence 7666653 358899999999999999999999875321 235799999999
Q ss_pred EeeeEEeeceeeeceeeeeeeeeeeecCCCCC------------------------------------------------
Q 001393 312 HMNYIECINVDYKSTRKESFYDLQLDVKGCRD------------------------------------------------ 343 (1087)
Q Consensus 312 ~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~s------------------------------------------------ 343 (1087)
.++...|..|+..+.+.++|..|+|+++....
T Consensus 400 ~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 479 (842)
T KOG1870|consen 400 YKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELK 479 (842)
T ss_pred ecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcc
Confidence 99999999999999999999999887753211
Q ss_pred --------------------------------------------------------------------------------
Q 001393 344 -------------------------------------------------------------------------------- 343 (1087)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (1087)
T Consensus 480 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 559 (842)
T KOG1870|consen 480 PVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLS 559 (842)
T ss_pred cceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 001393 344 -------------------------------------------------------------------------------- 343 (1087)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (1087)
T Consensus 560 ~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (842)
T KOG1870|consen 560 GAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQ 639 (842)
T ss_pred CCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccc
Confidence
Q ss_pred ----------------------------------------------------------HHHHHhhccceEEecCCCcccc
Q 001393 344 ----------------------------------------------------------VYASFDKYVEVERLEGDNKYHA 365 (1087)
Q Consensus 344 ----------------------------------------------------------L~e~L~~~~~~E~l~g~n~y~C 365 (1087)
|++|++.|+.+|.|..++.|.|
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C 719 (842)
T KOG1870|consen 640 SLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYC 719 (842)
T ss_pred cccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccC
Confidence 8999999999999999999999
Q ss_pred cccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCcc-ccCCccCCCCCCCCcCCCCCccEEEEEEE
Q 001393 366 EEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQ-LDLDRENGKYLSPDADRSVRNLYTLHSVL 443 (1087)
Q Consensus 366 ~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~-Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVV 443 (1087)
+.|. ++.|.|+..+.++|++|+||||||.|. +....|+.+.++||.. ||+ ++|+..... ..|+|+||.
T Consensus 720 ~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~--r~~~~k~~~~v~fPi~~ld~----s~~~~~~~~----~~Y~l~av~ 789 (842)
T KOG1870|consen 720 PQCKELRQATKKLDLWRLPEILIIHLKRFQYS--RESSSKVKTKVEFPLGSLDL----SEFVVNKEQ----VLYDLYAVG 789 (842)
T ss_pred hHHHHHHHHhhhhhhhhCCceEEEEeecceee--chhhhhhCccccCCCcCCCc----chhhccCcc----ceeeeeeee
Confidence 9996 789999999999999999999999996 4456899999999998 999 788775432 899999999
Q ss_pred EEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeec
Q 001393 444 VHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 444 vH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
+|+|.+.+|||+||.|...+++||.|||+.|++++++++. +..||+|||+|++
T Consensus 790 nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~--------------------------t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 790 NHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEID--------------------------TEAAYVLFYRRLD 842 (842)
T ss_pred cccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcc--------------------------cccceEEEEEecC
Confidence 9999999999999999987999999999999999887773 2589999999974
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.3e-30 Score=280.44 Aligned_cols=184 Identities=22% Similarity=0.366 Sum_probs=145.2
Q ss_pred ccccCCc-cccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCccc
Q 001393 198 GLKNQGA-TCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFM 276 (1087)
Q Consensus 198 GL~N~Gn-TCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~ 276 (1087)
|..|.+| +|||-|+|=+||. .
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------~ 22 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------E 22 (241)
T ss_pred CCccccCceeehHHHHHHHHH----------------------------------------------------------H
Confidence 7899999 9999999999987 6
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCcccccccccceE-EeeeEEeeceeeeceeeeeeeeeeeecC---CCCCHHHHHhhcc
Q 001393 277 QHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGH-HMNYIECINVDYKSTRKESFYDLQLDVK---GCRDVYASFDKYV 352 (1087)
Q Consensus 277 QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~-~~~~i~C~~c~~~s~~~e~f~~L~L~v~---~~~sL~e~L~~~~ 352 (1087)
|||+.||+..|++.|+.-+-. ..-++|.|- ...... +.-.|.++.|.++.. +..+|++||+.|+
T Consensus 23 q~D~~e~~~~l~~~~~~~~~~-----~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~ 90 (241)
T cd02670 23 QQDPEEFFNFITDKLLMPLLE-----PKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDDGGGITLEQCLEQYF 90 (241)
T ss_pred hcCHHHHHHHHHHHHhhhhhh-----HHHHHHhcCccccccc-------cccccceEEeecccCCCCCcCCHHHHHHHHh
Confidence 999999999999999864321 233455442 222111 223466777777654 3568999999999
Q ss_pred ceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCc---
Q 001393 353 EVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDA--- 429 (1087)
Q Consensus 353 ~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~--- 429 (1087)
+.|. |.++|++|+||||||.|+. +...|+++.|.||..||| .+|+.+..
T Consensus 91 ~~e~----------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl----~~~~~~~~~~~ 142 (241)
T cd02670 91 NNSV----------------------FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDI----PDFVADDPRAC 142 (241)
T ss_pred chhh----------------------hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCc----hhhcccccccc
Confidence 9775 7899999999999999975 567899999999999999 66665431
Q ss_pred -----------------CCCCCccEEEEEEEEEec-ccCCceEEEEEeeCC-----------CCCeEEeeCceeEEecH
Q 001393 430 -----------------DRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL-----------SDQWYKFDDERVTKEDV 479 (1087)
Q Consensus 430 -----------------~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~-----------~~~W~~fnD~~Vt~vs~ 479 (1087)
.......|+|+|||+|+| +.++|||+||+|... ++.|++|||..|+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~ 221 (241)
T cd02670 143 SKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVS 221 (241)
T ss_pred cccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccc
Confidence 123457899999999999 589999999999875 37999999999887653
No 36
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=6.2e-30 Score=288.15 Aligned_cols=266 Identities=25% Similarity=0.336 Sum_probs=226.5
Q ss_pred cccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHh-cC-CCcccchhhhhhcCCC--cc
Q 001393 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQ-YN-DTSVATKELTKSFGWD--TY 272 (1087)
Q Consensus 197 ~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~-~s-~~~v~~~~l~~~~~~~--~~ 272 (1087)
+||.|.+++||+||+||+|+++|++|+.++... ++....|++++|.-||.+|. .+ +..+.+..+.++|++. ..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~ 77 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEAA 77 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHH
Confidence 599999999999999999999999999998766 24556899999999999999 65 4567888999999875 34
Q ss_pred CccccccHHHHHHHHHHHHHHHhcCCCc-------------ccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecC
Q 001393 273 DSFMQHDVQELNRVLCEKLEDKMKGTVV-------------EGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVK 339 (1087)
Q Consensus 273 ~~~~QqDa~Efl~~Lld~Le~~~~~~~~-------------~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~ 339 (1087)
..+.|+|+++|+++|++.|+.++..... ...|.++|+....+.++|..|+.++.+.+....+.|..+
T Consensus 78 ~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp 157 (295)
T PF13423_consen 78 ALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYP 157 (295)
T ss_pred hcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCC
Confidence 5567999999999999999998865443 567899999999999999999999999999888888876
Q ss_pred C---CCCHHHHHhhccceEEecCCCcccccccCe-eeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccc
Q 001393 340 G---CRDVYASFDKYVEVERLEGDNKYHAEEHGL-QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQL 415 (1087)
Q Consensus 340 ~---~~sL~e~L~~~~~~E~l~g~n~y~C~~c~~-~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~L 415 (1087)
. ..++.+.|+.++..|.... ..|+.|++ +.+..+..|.++|+||.|.++|...+ . ....|....+.+|..+
T Consensus 158 ~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~-~-~w~~~~~~~~~ip~~i 232 (295)
T PF13423_consen 158 PSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE-E-FWPKKNWLKIWIPPSI 232 (295)
T ss_pred CCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc-c-ccccccCCceecceee
Confidence 5 4689999999999888775 78999974 56777788999999999999999987 3 3378889999999999
Q ss_pred cCCccCCCCCCCCc-----CCCCCccEEEEEEEEEec-ccCCceEEEEEeeCC--CCCeEEeeCcee
Q 001393 416 DLDRENGKYLSPDA-----DRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTL--SDQWYKFDDERV 474 (1087)
Q Consensus 416 dl~~~~~~~l~~~~-----~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~--~~~W~~fnD~~V 474 (1087)
++ ..++..+. ......+|+|.|+|+|.| +.++|||+|+||... +++||.|||..|
T Consensus 233 ~~----~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 233 NL----PHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ec----cccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 99 55554432 245678999999999999 589999999999863 369999999765
No 37
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=308.97 Aligned_cols=285 Identities=27% Similarity=0.430 Sum_probs=228.0
Q ss_pred CcccccccccCCccccch--hHHHHHhcChhHHHHHccCCCCCCCC--CCCCHHHHHHHHHHHHhcC---CCcccchhhh
Q 001393 192 KETGYVGLKNQGATCYMN--SLLQTLYHIPYFRKAVYHMPTTENDL--PSGSIPLALQSLFYKLQYN---DTSVATKELT 264 (1087)
Q Consensus 192 ~~~g~~GL~N~GnTCY~N--SvLQ~L~~~p~fr~~l~~~~~~~~~~--~~~~~~~~Lq~Lf~~l~~s---~~~v~~~~l~ 264 (1087)
....+-|..|.+++|+.| ++.|.++.+..+|+..+...+..... ....+...+..+|...... ...+.+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~ 307 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFI 307 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhh
Confidence 345678999999999999 99999999999998776544321111 1123333444444433332 2335555555
Q ss_pred hhcC--CCccCccccccHHHHHHHHHHHHHHHhcCCC--------------------------------cccccccccce
Q 001393 265 KSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------------------------------VEGTIQQLFEG 310 (1087)
Q Consensus 265 ~~~~--~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~--------------------------------~~~~i~~lF~g 310 (1087)
..+. ...|..++||||+||+..+++.+++...... ..+.++.+|.|
T Consensus 308 ~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g 387 (587)
T KOG1864|consen 308 SDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQG 387 (587)
T ss_pred hhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcC
Confidence 4443 2568889999999999999999876542110 23568899999
Q ss_pred EEeeeEEeeceeeeceeeeeeeeeeeecC--CCCCHHHHHhhccceEEecCCCccccccc-CeeeceeeeEeccCCCeEE
Q 001393 311 HHMNYIECINVDYKSTRKESFYDLQLDVK--GCRDVYASFDKYVEVERLEGDNKYHAEEH-GLQDAKKGVLFIDFPPVLQ 387 (1087)
Q Consensus 311 ~~~~~i~C~~c~~~s~~~e~f~~L~L~v~--~~~sL~e~L~~~~~~E~l~g~n~y~C~~c-~~~~a~k~~~i~~lP~vL~ 387 (1087)
++....+|.+|+..+.+.+.|.|+++++. ...++..+++.|..+|.+.|+|+|.|++| +.|+|.+++.++++|.+|+
T Consensus 388 ~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~ 467 (587)
T KOG1864|consen 388 ILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLT 467 (587)
T ss_pred eeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceee
Confidence 99999999999999999999999999998 68899999999999999999999999887 5899999999999999999
Q ss_pred EEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCCCCCe
Q 001393 388 LQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQW 466 (1087)
Q Consensus 388 i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W 466 (1087)
||||||.|+.......|+...+.+|.++.+ ...+.+. ......|.|+|||||.| +.+.|||+||+|.. +-.|
T Consensus 468 l~Lkrfk~~~~~~~~~kl~~~v~~plel~l----~~~~~~~--~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~nW 540 (587)
T KOG1864|consen 468 LHLKRFKYSEQQNRYTKLLYRVVFPLELRL----KDTLKDD--NNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFNW 540 (587)
T ss_pred eehhccccccccccccccccccccccceee----ccccccc--cCccceeeEEEEEEeccCCCCCcceEEEEeeC-CCCc
Confidence 999999999877778999999999999998 3333322 22247899999999999 79999999999995 2339
Q ss_pred EEeeCceeEEecHHhHH
Q 001393 467 YKFDDERVTKEDVKRAL 483 (1087)
Q Consensus 467 ~~fnD~~Vt~vs~~~vl 483 (1087)
+.|||+.|..++.+.+.
T Consensus 541 l~fdD~~V~~~s~~~v~ 557 (587)
T KOG1864|consen 541 LLFDDDNVEPISEEPVS 557 (587)
T ss_pred eecccccccccCcchhh
Confidence 99999999999998884
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-26 Score=247.24 Aligned_cols=299 Identities=21% Similarity=0.326 Sum_probs=223.2
Q ss_pred ccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCC--CCCCCHHHHHHHHHHHHhcC--------------C----
Q 001393 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND--LPSGSIPLALQSLFYKLQYN--------------D---- 255 (1087)
Q Consensus 196 ~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~--~~~~~~~~~Lq~Lf~~l~~s--------------~---- 255 (1087)
.+|+.|-||-|||||+||+|..|++|.+.+..++..... ..+..++.++..+......- .
T Consensus 28 Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~~~ 107 (420)
T KOG1871|consen 28 PRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHVVE 107 (420)
T ss_pred CccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccccc
Confidence 389999999999999999999999999988766632111 12234444555444333210 0
Q ss_pred -----------Ccccchhhhhh-cC---CCccCccccccHHHHHHHHHHHHHHHhcCCC---------------------
Q 001393 256 -----------TSVATKELTKS-FG---WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------------------- 299 (1087)
Q Consensus 256 -----------~~v~~~~l~~~-~~---~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~--------------------- 299 (1087)
.++-+..+... ++ ......+.|.||.||+..++|.|++++-...
T Consensus 108 ~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~ 187 (420)
T KOG1871|consen 108 KSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNL 187 (420)
T ss_pred hhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccccc
Confidence 01111111111 11 1234557899999999999999999873100
Q ss_pred ----------------------------------cccccccccceEEeeeEEeeceeeeceeeeeeeeeeeec--CCCCC
Q 001393 300 ----------------------------------VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV--KGCRD 343 (1087)
Q Consensus 300 ----------------------------------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v--~~~~s 343 (1087)
..+.|+++|+|++++...-.. .++|...+||..|+|++ .+..+
T Consensus 188 ~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i~s 266 (420)
T KOG1871|consen 188 CNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKIHS 266 (420)
T ss_pred ccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccccCC
Confidence 235789999999999877654 45668899999999999 56779
Q ss_pred HHHHHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccC-C
Q 001393 344 VYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDREN-G 422 (1087)
Q Consensus 344 L~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~-~ 422 (1087)
++++|+.+...|.+.+ |.-...+-..|.+++.+.+||++|++||+||.|-. ++...|+.+.+++|-.+.+...+ .
T Consensus 267 v~~ales~~~re~lp~---~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~~~~~s 342 (420)
T KOG1871|consen 267 VQDALESLVARESLPG---YSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKISKNCFS 342 (420)
T ss_pred HHHHhhccChhhcccc---eecCCCCeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeechhhhc
Confidence 9999999999999987 55544556789999999999999999999999853 67788999999999998885221 1
Q ss_pred CCCCCCcCCCCCccEEEEEEEEEec-ccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCC
Q 001393 423 KYLSPDADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFN 501 (1087)
Q Consensus 423 ~~l~~~~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~ 501 (1087)
+.+.... ......|+|.||+.|.| ++..|||.+-+.....+.|+++||..|..+..++|++-
T Consensus 343 ~gvk~~~-~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~---------------- 405 (420)
T KOG1871|consen 343 QGLKIRI-LIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKV---------------- 405 (420)
T ss_pred cccchhh-hccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccc----------------
Confidence 1222111 23456799999999999 79999999999998888999999999999999999641
Q ss_pred CCCcccccCCceEEEEEEeec
Q 001393 502 NTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 502 ~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
+.+.+||+|.|+|.+
T Consensus 406 ------t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 406 ------TGSRTPYLLYYIEAD 420 (420)
T ss_pred ------cCccchheeEeeecC
Confidence 224689999999853
No 39
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-26 Score=256.11 Aligned_cols=295 Identities=25% Similarity=0.348 Sum_probs=218.6
Q ss_pred cccccCCccccchhHHHHHhcChhHHHHHccCCCC----CCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcC----
Q 001393 197 VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT----ENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG---- 268 (1087)
Q Consensus 197 ~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~----~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~---- 268 (1087)
+||.|+|||||||+.+|||...|+++..+-..... ........+..+++.+|..|+.+ .++.|..+...+.
T Consensus 106 ~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~~P 184 (473)
T KOG1872|consen 106 VGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSSQYP 184 (473)
T ss_pred ccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHHhH
Confidence 69999999999999999999999998877543211 11112356778999999999998 8888877766552
Q ss_pred ----CCccCccccccHHHHHHHHHHHHHHHhcCCCc----ccccccccceEEeeeEEeeceeeecee--eeeeeeeeeec
Q 001393 269 ----WDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV----EGTIQQLFEGHHMNYIECINVDYKSTR--KESFYDLQLDV 338 (1087)
Q Consensus 269 ----~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~----~~~i~~lF~g~~~~~i~C~~c~~~s~~--~e~f~~L~L~v 338 (1087)
|.....+.||||.|.+..++-.++........ ...+..+|+..+.+...|.+-+..... .|.|+.|++-+
T Consensus 185 qfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i 264 (473)
T KOG1872|consen 185 QFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCII 264 (473)
T ss_pred HHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCcccccccccccccccceEE
Confidence 33445578999999999999999887765332 245778899999999999988766554 78888888877
Q ss_pred CCC-CCHHHHHhhccceEEecCCCcccccccCe-eeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCcccc
Q 001393 339 KGC-RDVYASFDKYVEVERLEGDNKYHAEEHGL-QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLD 416 (1087)
Q Consensus 339 ~~~-~sL~e~L~~~~~~E~l~g~n~y~C~~c~~-~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ld 416 (1087)
... ..+...|+.-++.+.-. .-+.-|. ..-.|...|.++|.+|+++..||.|-...+...|+-..|.||..||
T Consensus 265 ~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld 339 (473)
T KOG1872|consen 265 NKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLD 339 (473)
T ss_pred eeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhh
Confidence 543 34555554433322111 1111121 1235677789999999999999999888888889999999999999
Q ss_pred CCccCCCCCCCCc-----------------------------------------------CCCC-CccEEEEEEEEEec-
Q 001393 417 LDRENGKYLSPDA-----------------------------------------------DRSV-RNLYTLHSVLVHSG- 447 (1087)
Q Consensus 417 l~~~~~~~l~~~~-----------------------------------------------~~~~-~~~Y~L~gVVvH~G- 447 (1087)
. ...++++. ..+. ...|+|.|||.|.|
T Consensus 340 ~----~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgr 415 (473)
T KOG1872|consen 340 Q----QDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGR 415 (473)
T ss_pred H----HHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeecccc
Confidence 8 33332210 0112 56899999999999
Q ss_pred ccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEee
Q 001393 448 GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRE 521 (1087)
Q Consensus 448 s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~ 521 (1087)
+..+|||+|++|.. .+.|++|||+.|+-+..+.++ ...||.+ +.+||+|+|.-+
T Consensus 416 ss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~e~i~-~lsgggd------------------~~~ayvllyk~~ 469 (473)
T KOG1872|consen 416 SSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLGETIL-SLSGGGD------------------WHSAYVLLYKAR 469 (473)
T ss_pred ccCCCcceEEEecc-CCceeecccccccccccccee-eecCCCc------------------cchhhheeeccc
Confidence 89999999999997 669999999999999776664 4455543 469999999643
No 40
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.89 E-value=4e-23 Score=204.86 Aligned_cols=124 Identities=38% Similarity=0.704 Sum_probs=110.3
Q ss_pred EEEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCCCC-CceEEEEeecCCCC----CCCCceEEEEEEEEEEeeccc
Q 001393 54 KFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNV-DHLSMYLDVADSGT----LPYGWSRYAQFSLAVVNQIHS 128 (1087)
Q Consensus 54 ~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~~~-~~lSiyL~~~~~~~----~~~~W~~~a~f~l~l~n~~~~ 128 (1087)
+|+|+|+|||.+ ++.+.|++|.||||.|+|++||+|+.. +++|+||++.+... .+.+|.++|+|.|.|+||.++
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~ 80 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDP 80 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCC
Confidence 699999999998 689999999999999999999999864 89999999976543 257899999999999999887
Q ss_pred ceeEEecceeeecCCCCCcccccccCCCCCCCC----CCCccccccceeeeEEE
Q 001393 129 KYSIRKDTQHQFNARESDWGFTSFMPLGDLYDP----SRGYLVNDSVVVEAEVA 178 (1087)
Q Consensus 129 ~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~----~~gfL~nD~l~I~~~V~ 178 (1087)
..+..+.+.|.|+....+|||.+||++++|.+| .+|||+||+++|+++|+
T Consensus 81 ~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 81 SIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred ccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 766666778999988889999999999999854 57999999999999884
No 41
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.88 E-value=1.5e-22 Score=201.70 Aligned_cols=129 Identities=27% Similarity=0.581 Sum_probs=113.2
Q ss_pred CcEEEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCCC-----CCceEEEEeecCCCCCCCCceEEEEEEEEEEeec
Q 001393 52 TMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNN-----VDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQI 126 (1087)
Q Consensus 52 ~~~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~~-----~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~n~~ 126 (1087)
+++|+|+|+|||.+ ++.+.||.|.+||++|+|++||+|+. .+++|+||+|.+... ..+|++.|+|.|+|+|+.
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCCCeEEEEEEEEEEcCC
Confidence 68999999999999 68999999999999999999999953 279999999976543 348999999999999998
Q ss_pred ccceeEEecceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeec
Q 001393 127 HSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1087)
Q Consensus 127 ~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~ 182 (1087)
++..+..+...|.|.+...+|||++||+|++|.++.+|||.||+++|+|.|.+.++
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~ 135 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAP 135 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCC
Confidence 65555555666889888889999999999999888899999999999999988663
No 42
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.85 E-value=4.5e-21 Score=207.29 Aligned_cols=275 Identities=22% Similarity=0.217 Sum_probs=211.2
Q ss_pred CCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCC---Ccccchhhhhh
Q 001393 190 SKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYND---TSVATKELTKS 266 (1087)
Q Consensus 190 s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~---~~v~~~~l~~~ 266 (1087)
+.-.+|+|||.|+.++-|.|++||+|.+.+++|++++.-.. ..+....+...|..+...+|..+ ..++|.+++++
T Consensus 128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n--~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqa 205 (442)
T KOG2026|consen 128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN--YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQA 205 (442)
T ss_pred CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc--ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 34568999999999999999999999999999999986432 12233567788899999999864 67999999887
Q ss_pred c---CCCccCccccccHHHHHHHHHHHHHHHhcCCCc-ccccccccceEEeeeEEeec----eeeeceeeeeeeeeeeec
Q 001393 267 F---GWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV-EGTIQQLFEGHHMNYIECIN----VDYKSTRKESFYDLQLDV 338 (1087)
Q Consensus 267 ~---~~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~-~~~i~~lF~g~~~~~i~C~~----c~~~s~~~e~f~~L~L~v 338 (1087)
. ..+.+..+.|.|+.||+.+||+.|+..+.++.. .++|+..|+|.++....-.. -........+|+.|.|++
T Consensus 206 V~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDL 285 (442)
T KOG2026|consen 206 VMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDL 285 (442)
T ss_pred HHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecC
Confidence 5 356788999999999999999999999998774 48999999999987655433 122334567999999999
Q ss_pred CCCCC--------------HHHHHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceee
Q 001393 339 KGCRD--------------VYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVK 404 (1087)
Q Consensus 339 ~~~~s--------------L~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~K 404 (1087)
|...- |.+.|..|-....-+ --+...| ++..+.++|++|++|++||. .+..-..|
T Consensus 286 P~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e--------~~~~~~~-~rf~l~k~P~ylifh~~rF~--kNn~f~ek 354 (442)
T KOG2026|consen 286 PPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE--------VVTPKLA-MRFRLTKLPRYLIFHMKRFK--KNNFFKEK 354 (442)
T ss_pred CCCCcccchhhhcccccchHHHHHHHhcCceeee--------ecchhhh-hheeeecCCceEEEEeeecc--ccCccccc
Confidence 76543 555555544322111 0111234 88889999999999999997 34456789
Q ss_pred cCceEecC-ccccCCccCCCCCCCCc-CCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhH
Q 001393 405 INDRYEFP-LQLDLDRENGKYLSPDA-DRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRA 482 (1087)
Q Consensus 405 i~~~v~fP-~~Ldl~~~~~~~l~~~~-~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~v 482 (1087)
..+-++|| ..+|+ .+.+.... ....-..|.|.|-++|. ..-|||...|++.+.++||..+|-.|++..++-+
T Consensus 355 NpTl~~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi 428 (442)
T KOG2026|consen 355 NPTLVEFPYSEVDI----LHVLDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMI 428 (442)
T ss_pred CCceeeccCCccch----hhhhhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHH
Confidence 99999999 55666 44433221 11223789999999997 6789999999999999999999999999987766
Q ss_pred H
Q 001393 483 L 483 (1087)
Q Consensus 483 l 483 (1087)
.
T Consensus 429 ~ 429 (442)
T KOG2026|consen 429 F 429 (442)
T ss_pred H
Confidence 4
No 43
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.81 E-value=1.1e-19 Score=181.62 Aligned_cols=127 Identities=28% Similarity=0.452 Sum_probs=105.2
Q ss_pred CCcEEEEEEccccCcC---CCceecCcEEEcce---EEEEEEEeCCCC---CCceEEEEeecCCCCCCCCceEEEEEEEE
Q 001393 51 PTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQFSLA 121 (1087)
Q Consensus 51 ~~~~~tw~I~nfs~l~---~~~~~Sp~F~vGG~---~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~~~W~~~a~f~l~ 121 (1087)
...+|+|+|+|||.++ ++.+.|++|.+||| +|+|++||+|+. .+|+|+||++.+.. .|.+.|+|+|.
T Consensus 3 ~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~ 78 (139)
T cd03774 3 VKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFS 78 (139)
T ss_pred eEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEE
Confidence 4568999999999863 56899999999995 999999999963 48999999986532 35799999999
Q ss_pred EEeecccceeE-EecceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeec
Q 001393 122 VVNQIHSKYSI-RKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1087)
Q Consensus 122 l~n~~~~~~~~-~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~ 182 (1087)
|+|+.++.... .....+.|.. ..+|||.+||++++|.++.+|||.||+++|+|+|+|+.+
T Consensus 79 l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 79 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred EEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 99998765322 2233577764 579999999999999877789999999999999999863
No 44
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.78 E-value=4.5e-19 Score=175.57 Aligned_cols=122 Identities=30% Similarity=0.631 Sum_probs=102.6
Q ss_pred CCCcEEEEEEccccCcC--CCceecCcEEEcceEEEEEEEeCCCC---CCceEEEEeecCCCCCCCCceEEEEEEEEEEe
Q 001393 50 PPTMKFTWTIENFSRLN--TKKHYSDVFVVGGYKWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQFSLAVVN 124 (1087)
Q Consensus 50 ~~~~~~tw~I~nfs~l~--~~~~~Sp~F~vGG~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~n 124 (1087)
+...+++|+|+|||.++ ++.+.|++|.+|||+|+|++||+|+. .+|||+||++.+. ..|.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence 34567999999999884 56899999999999999999999974 3799999998753 236688899999999
Q ss_pred ecccceeEEecceeeecCCCCCcccccccCCCCCCCCCCCcccc--ccceeeeEEE
Q 001393 125 QIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVN--DSVVVEAEVA 178 (1087)
Q Consensus 125 ~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~n--D~l~I~~~V~ 178 (1087)
|.++..+......|.|.. ..+|||.+|+++++|.+ +|||.| |+++|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 966655566666788865 46799999999999953 799999 9999999997
No 45
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.74 E-value=1.9e-18 Score=174.81 Aligned_cols=123 Identities=25% Similarity=0.534 Sum_probs=98.9
Q ss_pred cEEEEEEccccCcC-------CCceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCCC-CCCceEEEEEE
Q 001393 53 MKFTWTIENFSRLN-------TKKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYAQFS 119 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~-------~~~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~-~~~W~~~a~f~ 119 (1087)
|+|+|+|+|||.++ ++.+.||+|++| ||.|+|.+||+|+. .+|||+||++.++... ...|.+.|+|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 58999999999874 247899999999 99999999999974 2799999999876432 35799999999
Q ss_pred EEEEeeccc--ceeEEec-----ceeeec-----CCCCCcccccccCCCCCCCCCCCccccccceeeeEE
Q 001393 120 LAVVNQIHS--KYSIRKD-----TQHQFN-----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (1087)
Q Consensus 120 l~l~n~~~~--~~~~~~~-----~~h~F~-----~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V 177 (1087)
|+|+||.++ ..+.... ..+.|. ....+|||.+|+++++|.+ +|||.||+++|+|.|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEE
Confidence 999999874 2222111 123454 2457899999999999954 699999999999987
No 46
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.73 E-value=7e-18 Score=168.69 Aligned_cols=125 Identities=18% Similarity=0.333 Sum_probs=100.7
Q ss_pred cEEEEEEccccCcC-----CC--ceecCcE--EEcceEEEEEEEeCCCC---CCceEEEEeecCCCCCCC-CceEEEEEE
Q 001393 53 MKFTWTIENFSRLN-----TK--KHYSDVF--VVGGYKWRILIFPKGNN---VDHLSMYLDVADSGTLPY-GWSRYAQFS 119 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~-----~~--~~~Sp~F--~vGG~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~~-~W~~~a~f~ 119 (1087)
|+|.|+|+|||.++ ++ .+.||+| .+|||.|+|.+||+|.+ .+|||+||.+..++.++. .|.+.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 68999999999874 33 6999999 99999999999999985 369999999997655443 899999999
Q ss_pred EEEEeeccccee--EEec---ceeeecCC----CCCcccccccCCCCCCCCCCCccccccceeeeEE
Q 001393 120 LAVVNQIHSKYS--IRKD---TQHQFNAR----ESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (1087)
Q Consensus 120 l~l~n~~~~~~~--~~~~---~~h~F~~~----~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V 177 (1087)
|+|++|.+.+.. .... ..+.|... +..||+.+||++++|...+.+||+||++.|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999754332 1111 13567544 4579999999999995545699999999999876
No 47
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.72 E-value=6.4e-18 Score=170.40 Aligned_cols=124 Identities=22% Similarity=0.421 Sum_probs=97.9
Q ss_pred cEEEEEEccccCcC-----CC--ceecCcEEE--cceEEEEEEEeCCCC---CCceEEEEeecCCCC-CCCCceEEEEEE
Q 001393 53 MKFTWTIENFSRLN-----TK--KHYSDVFVV--GGYKWRILIFPKGNN---VDHLSMYLDVADSGT-LPYGWSRYAQFS 119 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~-----~~--~~~Sp~F~v--GG~~W~I~lyP~G~~---~~~lSiyL~~~~~~~-~~~~W~~~a~f~ 119 (1087)
|+|.|+|.|||.++ ++ .+.||+|++ |||.|+|.+||+|.. .+|||+||.+.++.. ...+|++.|+|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 58999999999753 23 388999986 799999999999974 379999999987644 245799999999
Q ss_pred EEEEeecccceeEEe-----cceeeecC-----CCCCcccccccCCCCCCCCCCCccccccceeeeEEE
Q 001393 120 LAVVNQIHSKYSIRK-----DTQHQFNA-----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVA 178 (1087)
Q Consensus 120 l~l~n~~~~~~~~~~-----~~~h~F~~-----~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~ 178 (1087)
|+|++|.++...+.. ...+.|.. .+.+|||.+||++++|. .++||.||+++|+|.|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 999999864432211 12345653 34679999999999994 47899999999999883
No 48
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.71 E-value=2.1e-17 Score=171.05 Aligned_cols=127 Identities=20% Similarity=0.380 Sum_probs=100.7
Q ss_pred CCCcEEEEEEccccCcC-----CC--ceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCCCC-CCceEEE
Q 001393 50 PPTMKFTWTIENFSRLN-----TK--KHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (1087)
Q Consensus 50 ~~~~~~tw~I~nfs~l~-----~~--~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~-~~W~~~a 116 (1087)
...|+|.|+|.|||.++ ++ .+.||+|++| ||.|+|.+||+|++ .+|||+||.+..++.++ ..|++.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 34799999999999764 23 6999999999 99999999999985 36999999999765433 3899999
Q ss_pred EEEEEEEeecccceeEE-----ecceeeec-CC---CCCcccccccCCCCCCCCCCCccccccceeeeEEE
Q 001393 117 QFSLAVVNQIHSKYSIR-----KDTQHQFN-AR---ESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVA 178 (1087)
Q Consensus 117 ~f~l~l~n~~~~~~~~~-----~~~~h~F~-~~---~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~ 178 (1087)
+|+|+|++|.+....+. ....+.|. +. +..||+++||++++|. +++||+||++.|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 99999999964211110 01124575 33 4579999999999994 58999999999999885
No 49
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.71 E-value=1.8e-17 Score=168.12 Aligned_cols=123 Identities=25% Similarity=0.478 Sum_probs=97.8
Q ss_pred cEEEEEEccccCcC-------CCceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCCCC-CCceEEEEEE
Q 001393 53 MKFTWTIENFSRLN-------TKKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYAQFS 119 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~-------~~~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~-~~W~~~a~f~ 119 (1087)
|+|.|+|+|||.++ +..+.|++|++| ||.|+|.+||+|.. .+|||+||.+..++..+ ..|.+.|+|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 68999999999764 247899999999 99999999999974 37999999999865433 4899999999
Q ss_pred EEEEeeccc--c--eeEEe-----cceeeec--------CCCCCcccccccCCCCCCCCCCCccccccceeeeEE
Q 001393 120 LAVVNQIHS--K--YSIRK-----DTQHQFN--------ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (1087)
Q Consensus 120 l~l~n~~~~--~--~~~~~-----~~~h~F~--------~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V 177 (1087)
|+|++|.++ . .++.. ...+.|. .....|||..||++++|. +++||+||+++|+|.|
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v 153 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEe
Confidence 999999764 1 11111 1123454 234579999999999994 4799999999999987
No 50
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.70 E-value=3.3e-17 Score=162.96 Aligned_cols=125 Identities=19% Similarity=0.359 Sum_probs=98.1
Q ss_pred cEEEEEEccccCcC-----C--CceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCCCC-CCceEEEEEE
Q 001393 53 MKFTWTIENFSRLN-----T--KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYAQFS 119 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~-----~--~~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~-~~W~~~a~f~ 119 (1087)
|+|.|+|+||+... + ..++||+|+.+ ||.|+|.+||+|.+ .+|+|+||.+..++.++ ..|.+.++|+
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 68999999999642 2 36899999987 99999999999975 37999999998754322 3799999999
Q ss_pred EEEEeecccce-eEEecc---eeeec----CCCCCcccccccCCCCCCCCCCCccccccceeeeEE
Q 001393 120 LAVVNQIHSKY-SIRKDT---QHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (1087)
Q Consensus 120 l~l~n~~~~~~-~~~~~~---~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V 177 (1087)
|+|++|.+... ...... .+.|. ..+..||+.+||++++|.....+||+||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 99999975332 111121 25676 445579999999999995423599999999999987
No 51
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.67 E-value=2.9e-16 Score=152.82 Aligned_cols=123 Identities=46% Similarity=0.759 Sum_probs=101.5
Q ss_pred cEEEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCCC--CCceEEEEeecCCCCCCCCceEEEEEEEEEEeecccce
Q 001393 53 MKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNN--VDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKY 130 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~~--~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~n~~~~~~ 130 (1087)
++|+|+|.+|+...++.+.||.|.+||+.|+|.+||+|+. .+++|+||+|.........|.+.|+|.|.|+|++++.
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK- 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc-
Confidence 4799999999995478999999999999999999999974 4799999999877554568999999999999998333
Q ss_pred eEEecceeeec-CCCCCcccccccCCCCCCCCCCCccccccceeeeEEE
Q 001393 131 SIRKDTQHQFN-ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVA 178 (1087)
Q Consensus 131 ~~~~~~~h~F~-~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~ 178 (1087)
...+...+.|. ....+|||.+|+++++|.+ .+++.||+++|+|.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 23333345553 6678999999999999965 3448999999999873
No 52
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.66 E-value=2.8e-16 Score=159.21 Aligned_cols=124 Identities=21% Similarity=0.451 Sum_probs=94.4
Q ss_pred CcEEEEEEccccCcC-----CCceecCcE-EEcceEEEEEEEeCCCC--CCceEEEEeecCCCCC-CCCce-EEEEEEEE
Q 001393 52 TMKFTWTIENFSRLN-----TKKHYSDVF-VVGGYKWRILIFPKGNN--VDHLSMYLDVADSGTL-PYGWS-RYAQFSLA 121 (1087)
Q Consensus 52 ~~~~tw~I~nfs~l~-----~~~~~Sp~F-~vGG~~W~I~lyP~G~~--~~~lSiyL~~~~~~~~-~~~W~-~~a~f~l~ 121 (1087)
+.+|.|+|.|||.++ +..+.||+| ++|||.|+|.+||+|+. .+|||+||.+.+++.. ...|. +.|+++|+
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~ 80 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMT 80 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEE
Confidence 357999999999984 337999999 99999999999999985 4799999999876442 45899 48999999
Q ss_pred EEeeccc---ceeEEe----cc------------------eeeecC-------CCCCcccccccCCCCCCCCCCCccccc
Q 001393 122 VVNQIHS---KYSIRK----DT------------------QHQFNA-------RESDWGFTSFMPLGDLYDPSRGYLVND 169 (1087)
Q Consensus 122 l~n~~~~---~~~~~~----~~------------------~h~F~~-------~~~dwGf~~Fi~l~~L~~~~~gfL~nD 169 (1087)
|++|... ..+... .. .+.++. ...+|||..||++++|. +++||+||
T Consensus 81 LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk~d 158 (167)
T cd03771 81 LLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLKGD 158 (167)
T ss_pred EECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCcCC
Confidence 9999631 111111 00 011121 33479999999999995 47899999
Q ss_pred cceeeeEE
Q 001393 170 SVVVEAEV 177 (1087)
Q Consensus 170 ~l~I~~~V 177 (1087)
++.|.+.+
T Consensus 159 tl~i~~~~ 166 (167)
T cd03771 159 DLIILLDF 166 (167)
T ss_pred EEEEEEEe
Confidence 99998876
No 53
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.66 E-value=3.1e-16 Score=184.62 Aligned_cols=305 Identities=16% Similarity=0.210 Sum_probs=205.4
Q ss_pred ccCCCCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCcccchhhh
Q 001393 186 WSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYN-DTSVATKELT 264 (1087)
Q Consensus 186 ~~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s-~~~v~~~~l~ 264 (1087)
+++..-..+-|.||.-.+-.-|.||+||.|+++|++|.+++.... ....|++|+|.-||.+|..+ ..++....|.
T Consensus 489 FDF~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C----~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFl 564 (1118)
T KOG1275|consen 489 FDFQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC----TKEFCLLCELGFLFTMLDSSTGDPCQANNFL 564 (1118)
T ss_pred CCCcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc----chhHHHHHHHHHHHHHHhhhcCCccchhHHH
Confidence 355566788899999999999999999999999999999998643 34579999999999999986 4577888888
Q ss_pred hhcCCCc-----------c-------CccccccHH--------------HHHHHHHHHHHHHh-cCCCcccccccccceE
Q 001393 265 KSFGWDT-----------Y-------DSFMQHDVQ--------------ELNRVLCEKLEDKM-KGTVVEGTIQQLFEGH 311 (1087)
Q Consensus 265 ~~~~~~~-----------~-------~~~~QqDa~--------------Efl~~Lld~Le~~~-~~~~~~~~i~~lF~g~ 311 (1087)
++|.... . +...-||+. ++.+.........- -....+..+.+.|+-.
T Consensus 565 raf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~ 644 (1118)
T KOG1275|consen 565 RAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQE 644 (1118)
T ss_pred HHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhH
Confidence 8773110 0 011122333 33332222211100 0111345788999999
Q ss_pred EeeeEEeeceeeeceeeeeeeeeeeecCCCC---------CHHHHHhhccceEEecCCCcccccccCe-eeceeeeEecc
Q 001393 312 HMNYIECINVDYKSTRKESFYDLQLDVKGCR---------DVYASFDKYVEVERLEGDNKYHAEEHGL-QDAKKGVLFID 381 (1087)
Q Consensus 312 ~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~---------sL~e~L~~~~~~E~l~g~n~y~C~~c~~-~~a~k~~~i~~ 381 (1087)
+.....|..|+..+.+......+.|..++.. +..+.|+.-+. +...-+-.|+.|++ +....+..+..
T Consensus 645 ~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~---l~kn~~~~C~~C~k~ep~~q~~~vr~ 721 (1118)
T KOG1275|consen 645 IEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLS---LFKNKQAWCETCTKPEPTSQKKNVRS 721 (1118)
T ss_pred HHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhh---cccccccccccccCCCCccccccccc
Confidence 9999999999998877666666666654321 23344443222 11112256999975 45566677899
Q ss_pred CCCeEEEEEeeEEeeccccc--eeecCceEecCccccCCcc--CCCCCCC----------CcCCCCCccEEEEEEEEEec
Q 001393 382 FPPVLQLQLKRFEYDFMRDA--MVKINDRYEFPLQLDLDRE--NGKYLSP----------DADRSVRNLYTLHSVLVHSG 447 (1087)
Q Consensus 382 lP~vL~i~LkRf~~d~~~~~--~~Ki~~~v~fP~~Ldl~~~--~~~~l~~----------~~~~~~~~~Y~L~gVVvH~G 447 (1087)
+|.+|.|...-+.-...... ..|.-..+.+|..+.|..- .+..++. +.+.+.-.+|+|.|+|+|.|
T Consensus 722 LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~ 801 (1118)
T KOG1275|consen 722 LPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIG 801 (1118)
T ss_pred CcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEec
Confidence 99999998877653221111 2255677889998777321 0000100 11233447999999999999
Q ss_pred c-cCCceEEEEEeeC--------CCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEE
Q 001393 448 G-VHGGHYYAFIRPT--------LSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVY 518 (1087)
Q Consensus 448 s-~~~GHY~ayvr~~--------~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y 518 (1087)
+ .+.+|.+++||.. .+.+||.|||-.|++++++|++. |- ..+..+-||+|
T Consensus 802 d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~--~~-------------------~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 802 DNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALH--FD-------------------GPWKVPAILYY 860 (1118)
T ss_pred cCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheE--ec-------------------cCccCcEEEEE
Confidence 5 6999999999942 24699999999999999999963 22 23678889999
No 54
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.63 E-value=9.9e-16 Score=153.95 Aligned_cols=126 Identities=21% Similarity=0.402 Sum_probs=101.2
Q ss_pred CCCcEEEEEEccccCcC-------CCceecCcEEEc--ceEEEEEEEeCCCCC---CceEEEEeecCCCCCC-CCceEEE
Q 001393 50 PPTMKFTWTIENFSRLN-------TKKHYSDVFVVG--GYKWRILIFPKGNNV---DHLSMYLDVADSGTLP-YGWSRYA 116 (1087)
Q Consensus 50 ~~~~~~tw~I~nfs~l~-------~~~~~Sp~F~vG--G~~W~I~lyP~G~~~---~~lSiyL~~~~~~~~~-~~W~~~a 116 (1087)
...|+|+|+|.|||.+. ...++||+|+.+ ||+|++.+||+|++. .|||+|+.+..++.++ ..|++..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 45799999999999763 136899999774 899999999999853 6899999999998877 6999999
Q ss_pred EEEEEEEeecccceeEEec--------ceeee-cCCCCCcccccccCCCCCCCCCCCccccccceeeeEE
Q 001393 117 QFSLAVVNQIHSKYSIRKD--------TQHQF-NARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEV 177 (1087)
Q Consensus 117 ~f~l~l~n~~~~~~~~~~~--------~~h~F-~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V 177 (1087)
+++|+|++|.+.. ++... +.++. +..+..|||..|+++++|.. ++|||+||++.|+|.|
T Consensus 96 ~itl~llDQ~~r~-hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~-~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNRE-HVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEA-KNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCC-cceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccc-cCCcccCCeEEEEEEE
Confidence 9999999997543 22211 12233 34455799999999999964 3699999999999876
No 55
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.61 E-value=5.7e-16 Score=149.92 Aligned_cols=116 Identities=41% Similarity=0.717 Sum_probs=96.1
Q ss_pred EccccCcCC-C-ceecCcEEEcceEEEEEEEeCCCCCCceEEEEeecCCCCCC-CCceEEEEEEEEEEeecccceeEEec
Q 001393 59 IENFSRLNT-K-KHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLP-YGWSRYAQFSLAVVNQIHSKYSIRKD 135 (1087)
Q Consensus 59 I~nfs~l~~-~-~~~Sp~F~vGG~~W~I~lyP~G~~~~~lSiyL~~~~~~~~~-~~W~~~a~f~l~l~n~~~~~~~~~~~ 135 (1087)
|+|||++++ + .+.|+.|.+||++|+|.+||+|+ .+++|+||+|..+.... .+|+|.|++++.++++.++.......
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~-~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 79 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN-GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRIK 79 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES-TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC-cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeeee
Confidence 789999962 2 34458999999999999999998 78999999999886654 68999999999999998887433333
Q ss_pred ceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEE
Q 001393 136 TQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAV 179 (1087)
Q Consensus 136 ~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v 179 (1087)
.+.|... .+|||.+|+++++|.++ .|+.||+++|+|.|+|
T Consensus 80 -~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 80 -SHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp -CEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred -eeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 5888654 78999999999999653 3999999999999975
No 56
>smart00061 MATH meprin and TRAF homology.
Probab=99.53 E-value=4.1e-14 Score=130.98 Aligned_cols=93 Identities=31% Similarity=0.523 Sum_probs=80.0
Q ss_pred EEEEEccccCcC-CCceecCcEEEcceEEEEEEEeCCCCCCceEEEEeecCCCCCCCCceEEEEEEEEEEeecccceeEE
Q 001393 55 FTWTIENFSRLN-TKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIR 133 (1087)
Q Consensus 55 ~tw~I~nfs~l~-~~~~~Sp~F~vGG~~W~I~lyP~G~~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~n~~~~~~~~~ 133 (1087)
++|.|+||+.+. ++.+.||+|.+||+.|+|.+||+ .+|+|+||.|.+....+.+|++.|+|+|.|+|++++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~---~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~--~ 76 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK---NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL--S 76 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc---CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE--e
Confidence 589999999983 67899999999999999999999 47899999998776555589999999999999987643 4
Q ss_pred ecceeeecCCCCCccccccc
Q 001393 134 KDTQHQFNARESDWGFTSFM 153 (1087)
Q Consensus 134 ~~~~h~F~~~~~dwGf~~Fi 153 (1087)
+...+.|.. ..+|||.+||
T Consensus 77 ~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 77 KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred eeeeEEEcC-CCccceeeEC
Confidence 456788976 7889999986
No 57
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.30 E-value=3.1e-12 Score=128.04 Aligned_cols=123 Identities=21% Similarity=0.441 Sum_probs=93.7
Q ss_pred cEEEEEEccccCcC-----CCceecCcEEEc-ceEEEEEEEeCCCC----CCceEEEEeecCCCCCCC-CceEE-EEEEE
Q 001393 53 MKFTWTIENFSRLN-----TKKHYSDVFVVG-GYKWRILIFPKGNN----VDHLSMYLDVADSGTLPY-GWSRY-AQFSL 120 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~-----~~~~~Sp~F~vG-G~~W~I~lyP~G~~----~~~lSiyL~~~~~~~~~~-~W~~~-a~f~l 120 (1087)
..+.|+|.||+++. ...++||+|+.+ ||..+|.+||+|++ +.|+|+|+.+..++.++. .|+|. -+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 46899999999753 347999999885 99999999999975 269999999999876554 89964 59999
Q ss_pred EEEeeccc---ceeE----Eecce---------eeec--------------CCCCCcccccccCCCCCCCCCCCcccccc
Q 001393 121 AVVNQIHS---KYSI----RKDTQ---------HQFN--------------ARESDWGFTSFMPLGDLYDPSRGYLVNDS 170 (1087)
Q Consensus 121 ~l~n~~~~---~~~~----~~~~~---------h~F~--------------~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~ 170 (1087)
+|++|+.. +.++ ....+ ..|. ....++||+.|+++++|. +++||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCCe
Confidence 99999631 1111 00000 0122 134579999999999994 499999999
Q ss_pred ceeeeEE
Q 001393 171 VVVEAEV 177 (1087)
Q Consensus 171 l~I~~~V 177 (1087)
+.|.+.+
T Consensus 160 lfI~~~~ 166 (167)
T cd03783 160 LIIFVDF 166 (167)
T ss_pred EEEEEec
Confidence 9998765
No 58
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.27 E-value=8.4e-12 Score=124.17 Aligned_cols=123 Identities=23% Similarity=0.472 Sum_probs=95.1
Q ss_pred cEEEEEEccccCcC-----CCceecCcEEE-cceEEEEEEEeCCCC--CCceEEEEeecCCCCCCC-CceEE-EEEEEEE
Q 001393 53 MKFTWTIENFSRLN-----TKKHYSDVFVV-GGYKWRILIFPKGNN--VDHLSMYLDVADSGTLPY-GWSRY-AQFSLAV 122 (1087)
Q Consensus 53 ~~~tw~I~nfs~l~-----~~~~~Sp~F~v-GG~~W~I~lyP~G~~--~~~lSiyL~~~~~~~~~~-~W~~~-a~f~l~l 122 (1087)
.+|.|+|.||+++. ...++||+|+. .||+.++.+||+|++ ..|+|+|+.+..++.++. .|++. -+++|.|
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~L 81 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMML 81 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEE
Confidence 57999999999763 35799999966 599999999999975 369999999999876554 89999 8999999
Q ss_pred Eeecc---cceeEEe----c-----c-eeee--cC----------C-------CCCcccccccCCCCCCCCCCCcccccc
Q 001393 123 VNQIH---SKYSIRK----D-----T-QHQF--NA----------R-------ESDWGFTSFMPLGDLYDPSRGYLVNDS 170 (1087)
Q Consensus 123 ~n~~~---~~~~~~~----~-----~-~h~F--~~----------~-------~~dwGf~~Fi~l~~L~~~~~gfL~nD~ 170 (1087)
++|+. .+.++.. . . ...| .. . +.+|||+.|+++++|. ++.||+||+
T Consensus 82 lDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yikdD~ 159 (167)
T cd03782 82 LDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIKGDD 159 (167)
T ss_pred EcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCcccCCe
Confidence 99964 2222211 0 0 0123 11 1 4679999999999994 489999999
Q ss_pred ceeeeEE
Q 001393 171 VVVEAEV 177 (1087)
Q Consensus 171 l~I~~~V 177 (1087)
+.|-..+
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9887664
No 59
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.36 E-value=1.3e-06 Score=92.02 Aligned_cols=224 Identities=19% Similarity=0.293 Sum_probs=127.3
Q ss_pred ccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcC--CCccCcccc
Q 001393 200 KNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG--WDTYDSFMQ 277 (1087)
Q Consensus 200 ~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~--~~~~~~~~Q 277 (1087)
+|-.|.||+-++|-+|.|+..+|+.+-+.. ....++...|...+.+... .+.+......-+ -.......=
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~-----~~e~s~~~~L~~~Y~qa~~---ll~~~q~~~~~~~~~~~~~~~~l 77 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELC-----SKEESVFWRLFTKYNQANK---LLHTCQLDGVKDDDCKKVPSEIL 77 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhc-----cccccHHHHHHHHHHHHHH---HHHhhhhcCCCCcccccCchHHH
Confidence 688899999999999999999999995422 1234444444444333221 111111110000 000000001
Q ss_pred ccHHHHHHH----HHHHHHHHhc---CCC------------cccccccccceEEeeeEEeeceeeeceee--eeeeeeee
Q 001393 278 HDVQELNRV----LCEKLEDKMK---GTV------------VEGTIQQLFEGHHMNYIECINVDYKSTRK--ESFYDLQL 336 (1087)
Q Consensus 278 qDa~Efl~~----Lld~Le~~~~---~~~------------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~--e~f~~L~L 336 (1087)
.+|..-+.. +++.|.-.++ |.. .+..+.++|.-...=...|..||+..... -..-..+-
T Consensus 78 ~~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtn 157 (275)
T PF15499_consen 78 AKAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTN 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChhhhhheeeecccCC
Confidence 112222222 2333322221 100 24567899999999999999999864321 11111111
Q ss_pred ecCCCCCHHHHHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCcccc
Q 001393 337 DVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLD 416 (1087)
Q Consensus 337 ~v~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ld 416 (1087)
.++.-..|..+ ..-.|.+|+.....+++.+.+.|+|+.+|+- .| +|.. |
T Consensus 158 v~pdwhPLnA~-------------h~~pCn~C~~ksQ~rkMvlekv~~vfmLHFV-------eG----------LP~n-d 206 (275)
T PF15499_consen 158 VIPDWHPLNAV-------------HFGPCNSCNSKSQRRKMVLEKVPPVFMLHFV-------EG----------LPHN-D 206 (275)
T ss_pred CCCCCCccccc-------------ccCCCcccCChHHhHhhhhhcCchhhhhhhh-------cc----------CCcc-C
Confidence 12222222221 2235899988888889999999999999973 12 2222 2
Q ss_pred CCccCCCCCCCCcCCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCce
Q 001393 417 LDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDER 473 (1087)
Q Consensus 417 l~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~ 473 (1087)
+ ..|-- .-.+..|++.+||-..-. --|++++|++. +|.|.++||-+
T Consensus 207 l----~~ysF----~feg~~Y~Vt~VIQY~~~--~~HFvtWi~~~-dGsWLecDDLk 252 (275)
T PF15499_consen 207 L----QHYSF----HFEGCLYQVTSVIQYQAN--LNHFVTWIRDS-DGSWLECDDLK 252 (275)
T ss_pred C----Cccce----eecCeeEEEEEEEEEecc--CceeEEEEEcC-CCCeEeeccCC
Confidence 3 11100 113567999999988654 56999999997 88899999965
No 60
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.86 E-value=5.7e-05 Score=85.57 Aligned_cols=121 Identities=45% Similarity=0.757 Sum_probs=97.5
Q ss_pred EEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCCCCCceEEEEeecCCCCCCCCceEEEEEEEEEEeecccce-eEE
Q 001393 55 FTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKY-SIR 133 (1087)
Q Consensus 55 ~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~n~~~~~~-~~~ 133 (1087)
++|.|.+++.. +..++|..|..||..|++.+||.|+ +.|.|+...... +|.+.|.+.|.+.|+..... ...
T Consensus 6 ~~~~~~~~~~~-~l~~ys~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~~ 77 (297)
T KOG1987|consen 6 FTWVISNFSSV-GLVIYSNGFVKGGCKWRLSAYPKGN---YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLSTV 77 (297)
T ss_pred cceeeccCcch-hhhccccceeecCceEEEEEecCCC---EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeeee
Confidence 44999999998 4788999999999999999999997 788888877543 89999999999999987643 332
Q ss_pred ecceeeecC--CCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeecc
Q 001393 134 KDTQHQFNA--RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVL 183 (1087)
Q Consensus 134 ~~~~h~F~~--~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~~ 183 (1087)
......|.. -...||+..+++...+.+...|++.++.+.+.+.+.|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~ 129 (297)
T KOG1987|consen 78 EEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM 129 (297)
T ss_pred eeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee
Confidence 223344433 36789999999999998888999999888888877776653
No 61
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.002 Score=78.40 Aligned_cols=197 Identities=18% Similarity=0.125 Sum_probs=97.3
Q ss_pred cccCCccccchhHHHHHhcChhHHHHHccCCCCCC--CC-------CCCCHHHHHHHHHHHHhc---C---CC--cccch
Q 001393 199 LKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEN--DL-------PSGSIPLALQSLFYKLQY---N---DT--SVATK 261 (1087)
Q Consensus 199 L~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~--~~-------~~~~~~~~Lq~Lf~~l~~---s---~~--~v~~~ 261 (1087)
|.|.||+||.||+||+|..+|+|+..+.+++.... .. ......+..+.+-.-+.. . .. ..+..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999988765432110 00 011111222221111111 0 11 11122
Q ss_pred hhhhhcC-----CCccCccccccHHHHHHHHHHHHHHHhcCCCcccccc----------cccceEEeeeEEeeceeeece
Q 001393 262 ELTKSFG-----WDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQ----------QLFEGHHMNYIECINVDYKST 326 (1087)
Q Consensus 262 ~l~~~~~-----~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~----------~lF~g~~~~~i~C~~c~~~s~ 326 (1087)
.+...+. ...+....|+|+++++..|+-.+...+......-... ..+.....+ ..|..+...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~ 192 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGVSEEPVVYNDTSAIFLNPSLVHKITPKN-VVEQPYKKEST 192 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcccCcccceeccccccccCcccccccCcCc-ccccccccccc
Confidence 2222221 2346677899999999999999988776433211111 112222222 33333222211
Q ss_pred -----eeeeeeeeeeecCCCC----CHHHHHhhccceEEecCCCcccccccCe----eeceeeeEeccCCCeEEEEEeeE
Q 001393 327 -----RKESFYDLQLDVKGCR----DVYASFDKYVEVERLEGDNKYHAEEHGL----QDAKKGVLFIDFPPVLQLQLKRF 393 (1087)
Q Consensus 327 -----~~e~f~~L~L~v~~~~----sL~e~L~~~~~~E~l~g~n~y~C~~c~~----~~a~k~~~i~~lP~vL~i~LkRf 393 (1087)
.......+++...... ........+.+.+...|.+.+.|.+|.. ..+.+.....+-|..+..+..|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 272 (587)
T KOG1864|consen 193 SVPSESNKILSNICMGQSLSSELLKEKGPTFSYSNANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKR 272 (587)
T ss_pred ccchhhccccceeehhcccccccccccCCccccccccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccc
Confidence 1112222333332111 1222333444667777777777766532 23444444444566666666665
Q ss_pred Eee
Q 001393 394 EYD 396 (1087)
Q Consensus 394 ~~d 396 (1087)
.++
T Consensus 273 ~~~ 275 (587)
T KOG1864|consen 273 SYI 275 (587)
T ss_pred hhh
Confidence 543
No 62
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.031 Score=71.83 Aligned_cols=152 Identities=21% Similarity=0.248 Sum_probs=108.4
Q ss_pred EEEEecCChhhhccCceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCc
Q 001393 885 YYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPN 964 (1087)
Q Consensus 885 ~YevL~~pl~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~ 964 (1087)
.|..|++|++.=+....-.+.+..+.......+.+-++++++++||++.+.+.+++. ..+|++.+|.+|++++++..+
T Consensus 418 ~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~l~~~~i~~~~~~~~~~~~ 495 (842)
T KOG1870|consen 418 PFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLL--SWELKPVEILFDCFNKIFAAD 495 (842)
T ss_pred ccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccc--hhhcccceeccchhhhhhccC
Confidence 455567777744444444455556666767888999999999999999999999987 778999999999999999999
Q ss_pred -ccccccccccceEEEEecccccccCCCCCeEEEEEeeeccCc----ccccccccCCccEEEEecCCC--CHHHHHHHHH
Q 001393 965 -EKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESA----QNQMQVQNFGEPFFLVIHEGE--TLAEVKERIQ 1037 (1087)
Q Consensus 965 -~~i~~i~~~~~~~~~e~iP~~e~~~~~~~~li~v~hf~k~~~----~~h~~~~~fG~PF~~~v~~~E--~~~~~k~Rl~ 1037 (1087)
.....|.. ...++..++|. .......-.++++.|..+.+. +.|....+||.||++.+..|. +-.++..-+.
T Consensus 496 ~~~~~~i~~-~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~ 573 (842)
T KOG1870|consen 496 ELKLDSIYS-DEELFDYELGV-LKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVIC 573 (842)
T ss_pred ccccccccC-CcceEEeeccc-ccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcccccchhhHHh
Confidence 46666654 55788888886 221112334666766666653 344455799999999999975 3344444444
Q ss_pred HHh
Q 001393 1038 RKL 1040 (1087)
Q Consensus 1038 ~rl 1040 (1087)
.++
T Consensus 574 ~~~ 576 (842)
T KOG1870|consen 574 HRT 576 (842)
T ss_pred hcc
Confidence 443
No 63
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.17 Score=60.14 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=81.7
Q ss_pred EecCChhhhccCceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCccc-
Q 001393 888 VLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEK- 966 (1087)
Q Consensus 888 vL~~pl~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~~- 966 (1087)
-|++|++ .--++++++.-.+-... .+.+.+.+.+|+.+|...+.++.|... -.+|.+.+|+.++.++++.+-..
T Consensus 445 TLPLPvs-~vw~htiv~fp~~g~~~---pl~iel~~sSt~~~lk~lv~~~~gk~g-c~ei~v~~iy~g~~y~~l~~~dk~ 519 (823)
T COG5560 445 TLPLPVS-MVWKHTIVVFPESGRRQ---PLKIELDASSTIRGLKKLVDAEYGKLG-CFEIKVMCIYYGGNYNMLEPADKV 519 (823)
T ss_pred cccCchh-hcccccEEEECCCCCCC---ceEEEEeccchHHHHHHHHHHHhccCC-ccceeEEEEEeccchhhcchhhHH
Confidence 3555555 44455555544433333 368899999999999999988888753 34899999999999999987653
Q ss_pred -ccccccccceEEEEecccccccCCCCCeEEEEEeeeccCcccccccccCCccEEEEec
Q 001393 967 -IENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIH 1024 (1087)
Q Consensus 967 -i~~i~~~~~~~~~e~iP~~e~~~~~~~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~ 1024 (1087)
+..|.. .+.++..+ ..+++.+|||+|-.-+.. .+.-..||.|| +.+.
T Consensus 520 ll~~I~~-~d~vylYe-------~~~ngi~vpvvh~~~~~g--Yks~rlFg~pf-lqln 567 (823)
T COG5560 520 LLQDIPQ-TDFVYLYE-------TNDNGIEVPVVHLRIEKG--YKSKRLFGDPF-LQLN 567 (823)
T ss_pred HHhhcCc-cceEEEee-------cCCCCeEEEEEecccccc--ccchhhhCCcc-eEEE
Confidence 344554 33444444 235779999999954444 22347999997 4443
No 64
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.49 E-value=0.71 Score=49.64 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=82.6
Q ss_pred hhcee--EEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCCceEEecccccCCCCCCCCccccCcchHHH
Q 001393 797 VHNRQ--IVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLD--DPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSD 872 (1087)
Q Consensus 797 L~nr~--~v~f~~~~~~~~~~f~l~ls~~~~Y~~la~~va~~l~~~--~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~ 872 (1087)
|.++. .|.+..-.......+++.+++.-|-.+|.+++++++++. +..+||+|.. +++ ....+ .+...+|.+
T Consensus 15 lE~kk~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev--~~~--ki~~~-~~~d~~i~~ 89 (213)
T PF14533_consen 15 LENKKQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEV--SNH--KIYKI-LSEDEPISS 89 (213)
T ss_dssp HHSB--EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEE--ETT--EEEEE-E-TTSBGGG
T ss_pred HhCceEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEe--ECC--EEEee-cCCCCchhh
Confidence 34444 444553333334579999999999999999999999874 2458999983 221 11111 112344555
Q ss_pred hhcccCCccceEEEEEecCChhhhccC------ceEEEEEEcC--CCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCC-C
Q 001393 873 MLVHYNQTSDILYYEVLDIPLPELQGL------KNLKVAFHHA--TKDEVVIHNIRLPKQSTVGDVINELKTKVELSH-P 943 (1087)
Q Consensus 873 ~l~~~~~~~~~l~YevL~~pl~elE~~------k~~kv~w~~~--~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~-~ 943 (1087)
+ ..+ ..++-| .+|-.|+... +.+.|.=... ...+-..+.|.|.++-|+.|+.+.|++++|+++ +
T Consensus 90 l-~~~----~~~r~E--~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 90 L-NDY----ITLRIE--EIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp S---T----TEEEEE--E--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred c-cCc----ceeeee--cCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 4 111 124444 6777775543 5566654433 234447789999999999999999999999987 4
Q ss_pred CccEEEEEEeccEEE--EecCCc
Q 001393 944 NAELRLLEVFYHKIY--KIFAPN 964 (1087)
Q Consensus 944 ~~~lrl~~v~~~k~~--~~~~~~ 964 (1087)
-.|+++.-+.+++.. ..+..+
T Consensus 163 F~K~Kfaiv~~~~~~~~~yl~d~ 185 (213)
T PF14533_consen 163 FEKWKFAIVQNSRYSKPRYLEDD 185 (213)
T ss_dssp HTT-EEEEEETTEE---EE--TT
T ss_pred heeEEEEEEecCCcccceecccc
Confidence 578999999988873 444443
No 65
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=91.26 E-value=0.91 Score=51.42 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=51.7
Q ss_pred CcccccccccCCccccchhHHHHHhcChh-HHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhc-CC
Q 001393 192 KETGYVGLKNQGATCYMNSLLQTLYHIPY-FRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSF-GW 269 (1087)
Q Consensus 192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~-fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~-~~ 269 (1087)
...|++=|+=.-|.||+||++=+|=++.. |+ .-+++.++.++..++ +..|...+ ..
T Consensus 98 ~~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~------------------~~~l~~aw~~f~~G~----~~~fVa~~Ya~ 155 (320)
T PF08715_consen 98 VVNGFRVLKQSDNNCWVNAACLQLQALKIKFK------------------SPGLDEAWNEFKAGD----PAPFVAWCYAS 155 (320)
T ss_dssp EETTEEEE---TTTHHHHHHHHHHTTST--BS------------------SHHHHHHHHHHHTT------HHHHHHHHHH
T ss_pred EECCEEEEEecCCCcHHHHHHHHHHhcCCccC------------------CHHHHHHHHHHhCCC----hHHHHHHHHHH
Confidence 34677778888899999999776644321 21 124555555555443 22222211 11
Q ss_pred CccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeece
Q 001393 270 DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKST 326 (1087)
Q Consensus 270 ~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~ 326 (1087)
.....++..||++++..|++.+... ....+.....|..||....
T Consensus 156 ~~~~~G~~gDa~~~L~~ll~~~~~~-------------~~~~~~~~~~~c~CG~k~~ 199 (320)
T PF08715_consen 156 TNAKKGDPGDAEYVLSKLLKDADLD-------------YSVTMTKLEVCCGCGVKQE 199 (320)
T ss_dssp TT--TTS---HHHHHHHHHTTB-TT-------------T-EEEEEEEEECTTEEEEE
T ss_pred cCCCCCCCcCHHHHHHHHHHhcccc-------------ceEEEEEeeeeccCCccee
Confidence 2345567889999999998765422 2234445567889986543
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=90.19 E-value=0.4 Score=41.82 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=43.4
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEE
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1087)
-++.|..+++++.|+...++..|+|+++.+.|+= + + +.++++.|+...+|.+||+|
T Consensus 13 ~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f----d-G---~~L~~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 13 IKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF----D-G---KRLDPNDTPEDLGIEDGDTI 68 (72)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE----T-T---EEE-TTSCHHHHT-STTEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE----C-C---EEcCCCCCHHHCCCCCCCEE
Confidence 3567889999999999999999999966665531 1 2 45788899999999999997
No 67
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=89.17 E-value=3.5 Score=45.44 Aligned_cols=174 Identities=18% Similarity=0.278 Sum_probs=94.8
Q ss_pred cchHHHhhcccCC--ccceEEEEEec-----CChhhhccCc--eEEEEEEcCCCCeE-EEEEEEeCCCCCHHHHHHHHHh
Q 001393 867 VEHLSDMLVHYNQ--TSDILYYEVLD-----IPLPELQGLK--NLKVAFHHATKDEV-VIHNIRLPKQSTVGDVINELKT 936 (1087)
Q Consensus 867 ~~~l~~~l~~~~~--~~~~l~YevL~-----~pl~elE~~k--~~kv~w~~~~~~~~-~~~~~~v~k~~tv~dll~~l~~ 936 (1087)
..|+.++...... ..-.||=|+++ .++....... .+=+.+.++..+.. ..=.++|+++.+|++|+..+.+
T Consensus 27 ~~tl~~~~~~~~~~~~~~~lflE~~~~~~~~~~~~~~~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~ 106 (249)
T PF12436_consen 27 DMTLEEVRNKDSNKQSELRLFLEEASPNSPSEPLPPYDPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINE 106 (249)
T ss_dssp TSBCHHHHTS--S---SEEEEEEE--HHTTT-------TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHH
T ss_pred cccHHHHhhcccccccccEEEEeccCcccccccCCCCCCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHH
Confidence 4677777754222 12367888753 2333333333 34444556654433 3447899999999999999999
Q ss_pred hccCCCCCccEEEEEE-eccEEEEecCCcccccc--cccccceEEEEecccccccCC---CC--------CeEEEEEeee
Q 001393 937 KVELSHPNAELRLLEV-FYHKIYKIFAPNEKIEN--INDQYWTLRAEEIPEEEKNLG---PN--------DRLIHVYHFT 1002 (1087)
Q Consensus 937 ~~~~~~~~~~lrl~~v-~~~k~~~~~~~~~~i~~--i~~~~~~~~~e~iP~~e~~~~---~~--------~~li~v~hf~ 1002 (1087)
++|++. +..|.+||- ..+++..+ ++..++.. |.+ ++.|..+..+.++.... ++ -..|. .+|.
T Consensus 107 ~~g~p~-~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~-GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~-V~f~ 182 (249)
T PF12436_consen 107 RAGLPP-DTPLLLYEEIKPNMIEPI-DPNQTFEKAELQD-GDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVE-VEFK 182 (249)
T ss_dssp HHT--T-T--EEEEEEEETTEEEE---SSSBHHHTT--T-TEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEE-EEEE
T ss_pred HcCCCC-CCceEEEEEeccceeeEc-CCCCchhhcccCC-CCEEEEEeccccccccccCCCCHHHHHHHHhCeEE-EEEE
Confidence 999964 457999965 56788777 66665554 555 66777777664311111 11 01222 2343
Q ss_pred c--cCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEe
Q 001393 1003 K--ESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLS 1056 (1087)
Q Consensus 1003 k--~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~ 1056 (1087)
. .+. +-+|.+.+...-++.++-++|.++||+.. .+++|--+.
T Consensus 183 ~~~~~~---------~~~F~l~ls~~~tY~~la~~Va~~l~~dP---~~lr~~~~~ 226 (249)
T PF12436_consen 183 PKDNPN---------DPEFTLWLSKKMTYDQLAEKVAEHLNVDP---EHLRFFTVN 226 (249)
T ss_dssp ETTSTT------------EEEEEETT--HHHHHHHHHHHHTS-G---GGEEEE---
T ss_pred ECCCCC---------CCCEEEEECCCCCHHHHHHHHHHHHCCCh---HHEEEEEec
Confidence 3 222 45999999999999999999999999955 588887774
No 68
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=0.097 Score=64.29 Aligned_cols=190 Identities=17% Similarity=0.271 Sum_probs=107.8
Q ss_pred cccHHHHHHHHHHHHHHHhcCCC--------------------cccccccccceEEeeeEEeeceeeeceee-eeeeeee
Q 001393 277 QHDVQELNRVLCEKLEDKMKGTV--------------------VEGTIQQLFEGHHMNYIECINVDYKSTRK-ESFYDLQ 335 (1087)
Q Consensus 277 QqDa~Efl~~Lld~Le~~~~~~~--------------------~~~~i~~lF~g~~~~~i~C~~c~~~s~~~-e~f~~L~ 335 (1087)
..++.++|..++..|++...... ..+..+++|+-.......|..|+..+.-. ..-+-+.
T Consensus 549 ~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~ 628 (806)
T KOG1887|consen 549 EGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIV 628 (806)
T ss_pred hhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhh
Confidence 34566677777777766554321 24567789988888899999998765432 1112222
Q ss_pred eecCCCCCHHHHHh-----hccceEEecCCCccccc----ccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecC
Q 001393 336 LDVKGCRDVYASFD-----KYVEVERLEGDNKYHAE----EHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKIN 406 (1087)
Q Consensus 336 L~v~~~~sL~e~L~-----~~~~~E~l~g~n~y~C~----~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~ 406 (1087)
+.......+.-++. .+++.-.+ ..+..|+ .||+.. .-...|.+.|+|.+|.|.. ++....|-.
T Consensus 629 ~~a~slr~~k~a~~n~~f~~ilk~i~m--~~~m~cD~~~gGCgk~n-~v~h~is~~P~vftIvlew-----Ek~ETe~eI 700 (806)
T KOG1887|consen 629 IAADSLRQLKCAFQNITFEDILKNIRM--NDKMLCDKETGGCGKAN-LVHHILSPCPPVFTIVLEW-----EKSETEKEI 700 (806)
T ss_pred ccchhhhhHHHHhhhhhHHHHHHHhhh--hhhhcccccCCCCcchh-hhhhhcCCCCCeeEeeeeh-----hcccchHHH
Confidence 22222222222222 22222111 1234453 377643 3344578899999996642 222222221
Q ss_pred --ceEecCccccCCccCCCCCCCCcCCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeE--EeeCceeEEe-cHHh
Q 001393 407 --DRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWY--KFDDERVTKE-DVKR 481 (1087)
Q Consensus 407 --~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~--~fnD~~Vt~v-s~~~ 481 (1087)
+...+..++|+. ...... ......|+|+++|.-.+. +++|.|+... .+.|. +.+|..+..+ +|.+
T Consensus 701 ~~T~~aL~teidis----~~y~~g--~ep~t~yrLVSmv~~~e~--~~~~~C~Aye--~Nrwvs~r~~~~~~e~iG~w~d 770 (806)
T KOG1887|consen 701 SETTKALATEIDIS----RLYREG--LEPNTKYRLVSMVGNHEE--GEEYICFAYE--PNRWVSLRHEDSQGEVVGDWKD 770 (806)
T ss_pred HHHHHHHHhhhhHH----HHhhhc--cCcCceeEEEEEeeeccc--cceEEEeecc--CCcchhhHHHHHHhhhccchHH
Confidence 112244456662 222111 123578999999975543 7899999998 57777 9999888777 5667
Q ss_pred HHH
Q 001393 482 ALE 484 (1087)
Q Consensus 482 vl~ 484 (1087)
|+.
T Consensus 771 vvr 773 (806)
T KOG1887|consen 771 VVR 773 (806)
T ss_pred HHH
Confidence 754
No 69
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=88.18 E-value=2 Score=39.11 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=56.4
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
.+..|.||+|.- ....+. +-|..+++++.|...++++.|+|+++--.+|.= ..|.++.|.....+
T Consensus 8 ~~~~i~I~v~~~--~g~~~~----~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G---------~~L~~~~T~~~l~m 72 (87)
T cd01763 8 ISEHINLKVKGQ--DGNEVF----FKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDG---------QRIRDNQTPDDLGM 72 (87)
T ss_pred CCCeEEEEEECC--CCCEEE----EEEcCCCHHHHHHHHHHHHhCCCccceEEEECC---------eECCCCCCHHHcCC
Confidence 345577777644 333333 458999999999999999999999866556642 45778899999999
Q ss_pred CCCCEEEEE
Q 001393 766 EDGDIICFQ 774 (1087)
Q Consensus 766 ~~GDIi~fQ 774 (1087)
++||+|-+-
T Consensus 73 ~d~d~I~v~ 81 (87)
T cd01763 73 EDGDEIEVM 81 (87)
T ss_pred CCCCEEEEE
Confidence 999999764
No 70
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=87.69 E-value=0.23 Score=50.54 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=23.5
Q ss_pred cCCceEEEEEeeCCCCCeEEeeCceeEEecHH
Q 001393 449 VHGGHYYAFIRPTLSDQWYKFDDERVTKEDVK 480 (1087)
Q Consensus 449 ~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~ 480 (1087)
-..||-+.+.+. .+.||.+||+.+.+.++.
T Consensus 136 ~g~~Havfa~~t--s~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 136 KGQEHAVFACVT--SDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp ESTTEEEEEEEE--TTCEEEEETTEEEE----
T ss_pred cCCcceEEEEEe--eCcEEEecCCeeeeCCCC
Confidence 346999999998 799999999999998753
No 71
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=87.64 E-value=0.31 Score=56.56 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=22.4
Q ss_pred ccccccCCccccchhHHHHHhcChhHHHHH
Q 001393 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAV 225 (1087)
Q Consensus 196 ~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l 225 (1087)
+.|++-+-|.||+||.|-++|.-......+
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~dS~ 397 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTDST 397 (724)
T ss_pred cccccCCcchhhcccccccccccccccccc
Confidence 467777889999999998887655444443
No 72
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=87.35 E-value=2.1 Score=38.10 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=47.1
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEe
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 671 (1087)
...+|++...++.+|+++|++.++++++.+.|+.-....|.- -++.++ -|+.+.+. .++.-++||.+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~----v~l~d~----dle~aws~---~~~~~lTLwC~~ 79 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGED----VILSDT----NMEDVWSQ---AKDGCLTLWCTL 79 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCc----cCcChH----HHHHHHHh---hcCCeEEEEEec
Confidence 346899999999999999999999999999988754333332 133322 34444432 234578999874
No 73
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=87.03 E-value=0.95 Score=40.61 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=37.3
Q ss_pred EEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceeccc--CcCCccccccCCCCCEEEE
Q 001393 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHL--DKRTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 706 ~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i--~~~~t~~~~el~~GDIi~f 773 (1087)
|.-.+-++.++++++|...|.+.+++|.+ .+.||-+-. ++ ..+ ....|+.+..|.+||+|..
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~~--~~---~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDRN--NK---EELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---TT-T---BSSGG--GG---GCSSS-TT-CCCCT---TT-EEE-
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecCC--CC---cccccCCcCCHHHcCCCCccEEEE
Confidence 56667788999999999999999999977 667775532 22 333 4578999999999999964
No 74
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=86.84 E-value=0.42 Score=56.14 Aligned_cols=76 Identities=25% Similarity=0.444 Sum_probs=62.2
Q ss_pred CCCcEEEEEEccccCcC-------CCceecCcEEE--cceEEEEEEEeCCCCC---CceEEEEeecCCCCCCC-CceEEE
Q 001393 50 PPTMKFTWTIENFSRLN-------TKKHYSDVFVV--GGYKWRILIFPKGNNV---DHLSMYLDVADSGTLPY-GWSRYA 116 (1087)
Q Consensus 50 ~~~~~~tw~I~nfs~l~-------~~~~~Sp~F~v--GG~~W~I~lyP~G~~~---~~lSiyL~~~~~~~~~~-~W~~~a 116 (1087)
...|++.|+|.+|+..+ ...+.|+.|+. .||.-+..+|-+|++. .++|+|+....++.++. .|.+.-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 45789999999996443 35789999977 5888888888887643 68999999998876554 899999
Q ss_pred EEEEEEEee
Q 001393 117 QFSLAVVNQ 125 (1087)
Q Consensus 117 ~f~l~l~n~ 125 (1087)
++++.+++|
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999998
No 75
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=85.38 E-value=4 Score=36.93 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEecc-EEEEecCCcccc
Q 001393 902 LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYH-KIYKIFAPNEKI 967 (1087)
Q Consensus 902 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~-k~~~~~~~~~~i 967 (1087)
+||+.-+. .....-++.|+++.|..||+..+.+++++.+......|+++..+ ...+.+.+++..
T Consensus 2 ikV~~~~~--~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 2 LRVYPEDP--SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred EEEeCCcC--CCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCCh
Confidence 45555443 12233489999999999999999999999876678999999876 566677666643
No 76
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=84.70 E-value=1.8 Score=38.02 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=38.8
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|..+.+.|.+.+|++++|++|+++.|++..+ .+ |+..+++ |+|+..+.+
T Consensus 10 G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~---q~--L~~~G~~--L~d~~~L~~ 58 (74)
T cd01807 10 GRECSLQVSEKESVSTLKKLVSEHLNVPEEQ---QR--LLFKGKA--LADDKRLSD 58 (74)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHH---eE--EEECCEE--CCCCCCHHH
Confidence 8889999999999999999999999999866 33 3444544 777766654
No 77
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=83.70 E-value=5.2 Score=36.51 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCcc
Q 001393 901 NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNE 965 (1087)
Q Consensus 901 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~ 965 (1087)
.+||+.-.. ....--.+.|+++.|+.||+..+.+++++.+......|+++..+...+.+.+++
T Consensus 4 ~lrV~~~~~--~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e 66 (90)
T smart00314 4 VLRVYVDDL--PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDE 66 (90)
T ss_pred EEEEecccC--CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCC
Confidence 466666432 222344899999999999999999999997656789999998555666666655
No 78
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=81.59 E-value=1.8 Score=38.59 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=39.0
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCCCCcE--EEEEEeecCCCceecccCcCCccccccCCCCCEEEE
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEI--ELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l--~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1087)
--+.+|.+.+|++|+|.|.+.++.+....- --|.=.+ ..+ .+++++.|+.++.+.|||+|+-
T Consensus 15 ~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~-~~g---~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 15 VDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLAR-AGG---RPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGT---EEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEe-cCC---cccCCcCcHhHcCCCCCCEEEe
Confidence 346789999999999999999998644321 0122222 122 3799999999999999999975
No 79
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=80.76 E-value=6.5 Score=34.01 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=39.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|.-|.+.+.+..|++++|++|+++.|++..+ .+ |+..+++ |+|+..+.+
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~---q~--Li~~G~~--L~d~~~l~~ 56 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQ---LR--VIFAGKE--LRNTTTIQE 56 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCHHH---eE--EEECCeE--CCCCCcHHH
Confidence 7778899999999999999999999998865 33 3445554 788877766
No 80
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=79.50 E-value=5.2 Score=35.18 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=51.9
Q ss_pred EEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCC--CCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGF--DPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 692 lFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~--p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
||+|..+-.+ -.+-++.+.+|++|...|.+..|+ |++..-.+|. + ..++.+.++....+.+|+
T Consensus 3 i~vk~~~g~~------~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~------G---~~L~d~~~L~~~~i~~~~ 67 (77)
T cd01805 3 ITFKTLKQQT------FPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS------G---KILKDDTTLEEYKIDEKD 67 (77)
T ss_pred EEEEeCCCCE------EEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC------C---EEccCCCCHHHcCCCCCC
Confidence 6677665432 124578889999999999999999 7766555553 2 346677899999999999
Q ss_pred EEEEEeC
Q 001393 770 IICFQKS 776 (1087)
Q Consensus 770 Ii~fQ~~ 776 (1087)
+|..-..
T Consensus 68 ~i~~~~~ 74 (77)
T cd01805 68 FVVVMVS 74 (77)
T ss_pred EEEEEEe
Confidence 8877643
No 81
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=79.38 E-value=3.7 Score=36.74 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=40.3
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|-.|.+.+.++.|++++|+.|+++.|++. ++.|+.++..++ -|+|+..|.+
T Consensus 12 G~~~~~~v~~~~TV~~lK~~I~~~~~i~~---~~qrL~~~~~G~--~L~D~~tL~~ 62 (80)
T cd01792 12 GNEFLVSLRDSMTVSELKQQIAQKIGVPA---FQQRLAHLDSRE--VLQDGVPLVS 62 (80)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhCCCH---HHEEEEeccCCC--CCCCCCCHHH
Confidence 88899999999999999999999999866 556776554344 4777766654
No 82
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=78.47 E-value=5.5 Score=35.55 Aligned_cols=64 Identities=14% Similarity=0.324 Sum_probs=45.1
Q ss_pred eeEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCCCccccCcchHHHhhcc
Q 001393 800 RQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVH 876 (1087)
Q Consensus 800 r~~v~f~~~~~~~~~~f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 876 (1087)
-++|+|.- .+.+.+...++|.||.++|+++|++. |++++|.= ...+...-+.. +...|.+.+..
T Consensus 4 vvKV~f~~-------tIaIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsY----kde~s~~~v~l-~d~dle~aws~ 67 (80)
T cd06406 4 VVKVHFKY-------TVAIQVARGLSYATLLQKISSKLELP-AEHITLSY----KSEASGEDVIL-SDTNMEDVWSQ 67 (80)
T ss_pred EEEEEEEE-------EEEEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEe----ccCCCCCccCc-ChHHHHHHHHh
Confidence 36677762 58999999999999999999999985 78888753 22222212222 45678877754
No 83
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=78.20 E-value=5 Score=34.63 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=52.1
Q ss_pred EEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCE
Q 001393 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1087)
Q Consensus 691 llFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1087)
-||+|..+-.+- .+.++.+.+|++|...|.+..|.|++..-.+|. + ..++.+.++....+++|+.
T Consensus 2 ~i~vk~~~g~~~------~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~------g---~~L~d~~~L~~~~i~~~~~ 66 (72)
T cd01809 2 EIKVKTLDSQTH------TFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS------G---RVLKDDETLSEYKVEDGHT 66 (72)
T ss_pred EEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------C---EECCCcCcHHHCCCCCCCE
Confidence 577787764322 366778899999999999999999887655552 2 3567788999999999998
Q ss_pred EEE
Q 001393 771 ICF 773 (1087)
Q Consensus 771 i~f 773 (1087)
|-.
T Consensus 67 l~l 69 (72)
T cd01809 67 IHL 69 (72)
T ss_pred EEE
Confidence 743
No 84
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=77.98 E-value=2.6 Score=36.69 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+++++|++..|++++++|||.
T Consensus 11 ~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~ 43 (70)
T cd01794 11 VKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF 43 (70)
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 457888899999999999999999999999984
No 85
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=77.79 E-value=2.8 Score=36.60 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+++.+|++..|+|++++|||.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~ 44 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGIPASQQQLIY 44 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE
Confidence 467888899999999999999999999999985
No 86
>PTZ00044 ubiquitin; Provisional
Probab=77.67 E-value=2.8 Score=36.84 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.9
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..++++..++|+.+++++|++..|+|++++|||.
T Consensus 12 ~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (76)
T PTZ00044 12 KQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY 45 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 3467889999999999999999999999999994
No 87
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=77.28 E-value=2.9 Score=36.73 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=30.2
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+++++|++..|+|++++|||.
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~ 43 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL 43 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE
Confidence 467888899999999999999999999999985
No 88
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=76.49 E-value=3.1 Score=35.89 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..++|+.+|+++|++..|++++++||+.
T Consensus 12 ~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 44 (71)
T cd01812 12 HDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF 44 (71)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCChHHeEEee
Confidence 457888899999999999999999999999984
No 89
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=76.47 E-value=8 Score=33.74 Aligned_cols=49 Identities=24% Similarity=0.397 Sum_probs=37.5
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|-.|.+.+.+.+|.+++|++|++++|++..+ .++ +..++ -|+|+..+.+
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~---q~L--~~~g~--~L~d~~~L~~ 58 (76)
T cd01803 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAGK--QLEDGRTLSD 58 (76)
T ss_pred CCEEEEEECCcCcHHHHHHHHHHHhCCCHHH---eEE--EECCE--ECCCCCcHHH
Confidence 8889999999999999999999999998743 343 22333 3677766655
No 90
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=75.84 E-value=5.3 Score=34.83 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=39.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|-.|.+.+.+.+|+.++|.+|+++.|++..+. | ++..+++ |+|+..+.+
T Consensus 8 G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q---~--Li~~G~~--L~D~~~l~~ 56 (70)
T cd01794 8 GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQ---R--WFFSGKL--LTDKTRLQE 56 (70)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHe---E--EEECCeE--CCCCCCHHH
Confidence 99999999999999999999999999988653 3 3444554 788777654
No 91
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=75.23 E-value=3.5 Score=36.18 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=30.1
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.|..++|+.+++++|++..|++++++||+.
T Consensus 13 ~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~ 45 (74)
T cd01807 13 CSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF 45 (74)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 457888999999999999999999999999973
No 92
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=75.16 E-value=3.6 Score=35.67 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.++++.|++..|++++++|||.
T Consensus 11 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~ 43 (70)
T cd01798 11 FPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF 43 (70)
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE
Confidence 457888999999999999999999999999974
No 93
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=74.68 E-value=4.2 Score=35.99 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=30.3
Q ss_pred CceEEEEeccccHHHHHHHHHHHhCCCCCceEE
Q 001393 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRF 624 (1087)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 624 (1087)
...++.+..++|+.+++.+|.+..|+|++++||
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL 45 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW 45 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 456788999999999999999999999999999
No 94
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=74.52 E-value=3.6 Score=36.22 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=28.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
.+.+..++|+.+|+++|++..|++++++||-
T Consensus 15 ~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi 45 (73)
T cd01791 15 RVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK 45 (73)
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCChHHEEEE
Confidence 4577888999999999999999999999985
No 95
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=74.14 E-value=14 Score=34.35 Aligned_cols=62 Identities=31% Similarity=0.377 Sum_probs=46.4
Q ss_pred eEEEE--EEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCC-CccEEEEEEe--ccEEEEecCCcc
Q 001393 901 NLKVA--FHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHP-NAELRLLEVF--YHKIYKIFAPNE 965 (1087)
Q Consensus 901 ~~kv~--w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lrl~~v~--~~k~~~~~~~~~ 965 (1087)
.+||+ |+... ..-.++.|+++.|+.|++.++.+++|+.++ ....+|.||. .+-..++++.++
T Consensus 4 ~iKVY~G~L~~~---~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ld~gv~ER~l~~~E 70 (97)
T cd01783 4 VVKVYPGWLRVG---VAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLLDRGVVERTVLPQE 70 (97)
T ss_pred eEEEecCccccC---cceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEEecCCeeeeeCCCcc
Confidence 45665 55432 223489999999999999999999999864 4789999996 444567776666
No 96
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=73.52 E-value=4.7 Score=35.25 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..+.|+.+|+++|++..|+|++++||+.
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~ 45 (76)
T cd01806 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_pred EEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE
Confidence 457888999999999999999999999999983
No 97
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=73.18 E-value=11 Score=34.25 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEec
Q 001393 902 LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIF 961 (1087)
Q Consensus 902 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~ 961 (1087)
++|....+.... ...+..+|++.||++|...|.+.+|++.+..+|.++.-.++.....+
T Consensus 2 v~l~It~~~~~~-~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~ 60 (87)
T PF14560_consen 2 VKLFITSSNSKQ-RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEEL 60 (87)
T ss_dssp EEEEEEESSSSS-SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEES
T ss_pred EEEEEEeCCCCC-eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCcccccc
Confidence 566666666532 34568999999999999999999999877766666633333333333
No 98
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=73.12 E-value=6.4 Score=33.76 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=48.1
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEe
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~ 775 (1087)
.+-|+.+.+|.+|...|.+..|+|++....+|. + ..++...|+....|.+|++|..-.
T Consensus 9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~------G---~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 9 TLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN------G---KELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET------T---EEESTTSBTGGGTTSTTEEEEEEE
T ss_pred EEEECCCCCHHHhhhhcccccccccccceeeee------e---ecccCcCcHHHcCCCCCCEEEEEE
Confidence 355789999999999999999999988777763 2 235788999999999999987643
No 99
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=73.00 E-value=11 Score=33.15 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=37.0
Q ss_pred ccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1017 EPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1017 ~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
-.+.+.|.+.+|++++|.+|+++.|++..+. -|+..+++ |+|+..+.+
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-----~Li~~Gk~--L~D~~tL~~ 56 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQ-----VLLLAGVP--LEDDATLGQ 56 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHE-----EEEECCeE--CCCCCCHHH
Confidence 3467889999999999999999999988652 33445554 788877765
No 100
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=72.66 E-value=4.4 Score=35.39 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|++++++|||.
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 357888889999999999999999999999984
No 101
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=72.44 E-value=12 Score=34.08 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=48.7
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
.-.-++.+.+|++|...|..+.|.|++.....+..-+ .+...+...+...++....+.||++|-+.-.
T Consensus 16 ~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~-~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~ 83 (87)
T PF14560_consen 16 VEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDK-DDSKIEELDDDDATLGSYGIKDGMRIHVVDT 83 (87)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TS-SSSEEEESSGSSSBCCHHT-STTEEEEEEE-
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecC-CCccccccCCCccEeecCCCCCCCEEEEEeC
Confidence 3366889999999999999999999998765554222 2333434445688999999999999988754
No 102
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=72.13 E-value=9.4 Score=33.30 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=51.9
Q ss_pred EEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEE
Q 001393 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1087)
Q Consensus 692 lFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1087)
|++|..+-.+ +. +-++.+.+|++|...|.+..|+|++..-.+|. + ..++.+.|+....+++|+.|
T Consensus 3 i~v~~~~g~~--~~----~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~------g---~~L~d~~tl~~~~i~~g~~i 67 (76)
T cd01806 3 IKVKTLTGKE--IE----IDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDDKTAADYKLEGGSVL 67 (76)
T ss_pred EEEEeCCCCE--EE----EEECCCCCHHHHHHHHhHhhCCChhhEEEEEC------C---eEccCCCCHHHcCCCCCCEE
Confidence 5666655432 22 45788999999999999999999987555553 1 24567789999999999998
Q ss_pred EEEeC
Q 001393 772 CFQKS 776 (1087)
Q Consensus 772 ~fQ~~ 776 (1087)
-+-..
T Consensus 68 ~l~~~ 72 (76)
T cd01806 68 HLVLA 72 (76)
T ss_pred EEEEE
Confidence 76543
No 103
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=72.11 E-value=13 Score=32.53 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=43.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhhcccccceeeEee
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQVCFLSIIFFF 1084 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~~~~~~~~~~~~~ 1084 (1087)
|.-|-+.|.+..|+.++|++|+++.|++..++ ++ +..++ -|+|+..+.+ .....-+.+...
T Consensus 8 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q---~L--~~~G~--~L~D~~tL~~-~~i~~~~tl~l~ 68 (74)
T cd01810 8 GRSSIYEVQLTQTVATLKQQVSQRERVQADQF---WL--SFEGR--PMEDEHPLGE-YGLKPGCTVFMN 68 (74)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHhCCCHHHe---EE--EECCE--ECCCCCCHHH-cCCCCCCEEEEE
Confidence 88889999999999999999999999987554 33 33444 3778777765 343334444443
No 104
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=72.10 E-value=5.1 Score=33.43 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=30.0
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...+++..++|+.+|++.|++.+|++++++||+.
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~ 44 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY 44 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 3467888899999999999999999999999864
No 105
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=71.67 E-value=34 Score=32.31 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=53.9
Q ss_pred ecCChhhhccCceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCC---CCccEEEEEEec
Q 001393 889 LDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSH---PNAELRLLEVFY 954 (1087)
Q Consensus 889 L~~pl~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~---~~~~lrl~~v~~ 954 (1087)
|+.|-.+||-.-.|++++...+ .++..--+.|+-+.|+.++++.|.+|+.... +..+.-||+++.
T Consensus 11 ~s~p~e~lef~gvmrf~~qd~~-~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~ 78 (112)
T cd01782 11 LSYPTEDLEFHGVMRFYFQDGG-EKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHE 78 (112)
T ss_pred ecCCCcccEEeeEEEEEEEcCC-CcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEec
Confidence 7888889999999999999888 4566668999999999999999999997541 234788888864
No 106
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=71.19 E-value=5.3 Score=34.46 Aligned_cols=34 Identities=35% Similarity=0.686 Sum_probs=30.6
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..++++..+.|+.+|+++|++..|++++++||+.
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 12 THTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 3467888899999999999999999999999985
No 107
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=70.94 E-value=6.2 Score=35.92 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=31.6
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...++|.+++|+..|++++++..|++++++||+.
T Consensus 23 ~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f 56 (87)
T cd01763 23 EVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF 56 (87)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 4578999999999999999999999999999987
No 108
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=70.74 E-value=6.8 Score=33.58 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..+.|+.+|+..|++..|++++++||-.
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred EEEEECCCCCHHHhhhhcccccccccccceeee
Confidence 467889999999999999999999999999864
No 109
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=70.25 E-value=9.7 Score=31.70 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=33.3
Q ss_pred cEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhh
Q 001393 1018 PFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVF 1070 (1087)
Q Consensus 1018 PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~ 1070 (1087)
.+-+.|.++.|++++|++|++++|++... .|+ +..++ .|.|+..+.
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~---~~L--~~~g~--~L~d~~tL~ 56 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQ---QRL--IYKGK--VLEDDRTLA 56 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHH---EEE--EECCE--ECCCCCCHH
Confidence 56788999999999999999999997653 333 33343 366654443
No 110
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=70.17 E-value=7.3 Score=34.16 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=45.3
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEE
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQ 774 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ 774 (1087)
+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....+++|+.|..-
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~------G---~~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQADQFWLSFE------G---RPMEDEHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEEC------C---EECCCCCCHHHcCCCCCCEEEEE
Confidence 55788899999999999999999887655543 2 34667789999999999998654
No 111
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=69.48 E-value=7.6 Score=39.91 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=19.9
Q ss_pred CCcccccccccCCccccchhHHHHHhcC-hhHHHHHc
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHI-PYFRKAVY 226 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~-p~fr~~l~ 226 (1087)
+....+.|+.|.+|+|++||++|.+-.. .+|-+.+|
T Consensus 28 ~~~~eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y 64 (193)
T PF05408_consen 28 DGKMEFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYY 64 (193)
T ss_dssp ----EEE----SSSTHHHHHHHHHHHHHT-GTTHHHH
T ss_pred CcceEEecCCCCCCChHHHHHHHHHHHcCcccchhhc
Confidence 3444567999999999999999987443 23444444
No 112
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=67.93 E-value=6.6 Score=34.67 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=30.6
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..++.+..++|+.+|+++|....|+|+++++|+.
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~ 42 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY 42 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 3467888899999999999999999999999985
No 113
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=67.88 E-value=6.6 Score=34.10 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..+.|+.+|+++|++..|++++++||+.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~ 44 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF 44 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE
Confidence 367888889999999999999999999999864
No 114
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=67.09 E-value=16 Score=33.03 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=47.2
Q ss_pred eEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEE-EEeccEEEEecCCcccccc
Q 001393 901 NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLL-EVFYHKIYKIFAPNEKIEN 969 (1087)
Q Consensus 901 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~-~v~~~k~~~~~~~~~~i~~ 969 (1087)
.+||+--...... ..-.+.|+++.|+.||++.+.+++++.+......|| ....+...+.+.+++..-.
T Consensus 4 ~lrVy~~~~~~~~-~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~ 72 (93)
T PF00788_consen 4 VLRVYDGDGSPGS-TYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQ 72 (93)
T ss_dssp EEEEEETTSSSCC-SEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHH
T ss_pred EEEEEcCCCCCCc-cEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHH
Confidence 3566654433222 234899999999999999999999995556788888 3345556667766664433
No 115
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=66.38 E-value=9.7 Score=34.44 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=32.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeec
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKR 630 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~ 630 (1087)
...|+++++|+.+|++++...+|++++.+||..+..+
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC
Confidence 4578999999999999999999999999999776544
No 116
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=66.29 E-value=7.6 Score=34.35 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=30.3
Q ss_pred cCCccEEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001393 1014 NFGEPFFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1087)
Q Consensus 1014 ~fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~ke 1046 (1087)
++|-.+.+.+.+..|++++|++|.++.|++...
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~ 42 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAV 42 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 459999999999999999999999999998764
No 117
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=65.99 E-value=8.6 Score=32.57 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.2
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..++|+.+|++.|++..|+++++++||.
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 456788889999999999999999999999854
No 118
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=65.53 E-value=6.8 Score=34.85 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=28.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
.++.+..++|+.+|+++|++..|++++++||-
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~ 45 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPKERLALL 45 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCChHHEEEE
Confidence 45788888999999999999999999999985
No 119
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=64.69 E-value=8.3 Score=32.67 Aligned_cols=48 Identities=31% Similarity=0.445 Sum_probs=36.7
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVF 1070 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~ 1070 (1087)
|.++.+.+.+.+|++++|++|.+++|++... .|+ +..++ -++|+..+.
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~---~~l--~~~g~--~l~d~~~l~ 54 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQ---QRL--IYAGK--ILKDDKTLS 54 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHH---EEE--EECCc--CCCCcCCHH
Confidence 8899999999999999999999999987765 344 33443 356655444
No 120
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=64.30 E-value=8.3 Score=36.39 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=30.2
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|++++++|||.
T Consensus 40 ~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~ 72 (103)
T cd01802 40 FELRVSPFETVISVKAKIQRLEGIPVAQQHLIW 72 (103)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE
Confidence 457888999999999999999999999999984
No 121
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=63.89 E-value=9.4 Score=33.58 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=38.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|.+|.+.+.+..|++++|++|+++.|++.. +.|+ +..++ .|+|+..|.+
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~---~qrL--i~~Gk--~L~D~~tL~~ 59 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPE---KIVL--KKWYT--IFKDHISLGD 59 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChH---HEEE--EeCCc--CCCCCCCHHH
Confidence 999999999999999999999999998764 3454 32243 5787765555
No 122
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=63.86 E-value=7.7 Score=34.20 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.6
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+.+..++|+.+|+++|++..|+|+++++|-.
T Consensus 13 ~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 13 SVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 45777888999999999999999999999865
No 123
>PTZ00044 ubiquitin; Provisional
Probab=63.66 E-value=10 Score=33.26 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=37.7
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
|..+.+.+.+.+|.+++|++|+++.|++..+ .|+ +..+++ |+|+..+.+.
T Consensus 10 G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~---q~L--~~~g~~--L~d~~~l~~~ 59 (76)
T PTZ00044 10 GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQ---IRL--IYSGKQ--MSDDLKLSDY 59 (76)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHH---eEE--EECCEE--ccCCCcHHHc
Confidence 8889999999999999999999999998854 333 323433 6676655543
No 124
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=62.29 E-value=15 Score=32.04 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=44.4
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCc-CCccccccCCCCCEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDK-RTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~-~~t~~~~el~~GDIi~f 773 (1087)
.+-|+.+.+|+++...|.+.-|+|++....+|.- ..++. ..+++...+++||.|..
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G---------k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 13 SLDVDPDLELENFKALCEAESGIPASQQQLIYNG---------RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC---------eEccCCcccHHHcCCCCCCEEEE
Confidence 3567889999999999999999999877666642 23444 46788899999999875
No 125
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=62.01 E-value=7.5 Score=34.70 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=27.3
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
++.+..+.|+.+|+++|++..|++++++||-
T Consensus 16 ~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~ 46 (80)
T cd01792 16 LVSLRDSMTVSELKQQIAQKIGVPAFQQRLA 46 (80)
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 4566778899999999999999999999983
No 126
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=61.22 E-value=57 Score=29.43 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=41.0
Q ss_pred EEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCcccccc
Q 001393 902 LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIEN 969 (1087)
Q Consensus 902 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~ 969 (1087)
++|....+. . -...+..+|+..||++|.++|...+|.+.+..+|.++...+..+..+-+.+..|..
T Consensus 2 v~v~i~~~~-~-~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~ 67 (84)
T cd01789 2 VTVNITSSA-D-SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGS 67 (84)
T ss_pred EEEEEEeCC-C-ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeee
Confidence 344554443 2 23356789999999999999999999986665555555443434333333334433
No 127
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=61.09 E-value=22 Score=33.53 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=55.8
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
.+.+-||+|..+-.+-. +-|..+.+|++|...|.++-|+|++..-.+|.- ..++.+.+++...|+
T Consensus 25 ~~~M~I~Vk~l~G~~~~------leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~G---------k~L~D~~tL~dy~I~ 89 (103)
T cd01802 25 YDTMELFIETLTGTCFE------LRVSPFETVISVKAKIQRLEGIPVAQQHLIWNN---------MELEDEYCLNDYNIS 89 (103)
T ss_pred CCCEEEEEEcCCCCEEE------EEeCCCCcHHHHHHHHHHHhCCChHHEEEEECC---------EECCCCCcHHHcCCC
Confidence 34578888877654322 467889999999999999999998876555542 347777899989999
Q ss_pred CCCEEEEE
Q 001393 767 DGDIICFQ 774 (1087)
Q Consensus 767 ~GDIi~fQ 774 (1087)
+|+.|-..
T Consensus 90 ~~stL~l~ 97 (103)
T cd01802 90 EGCTLKLV 97 (103)
T ss_pred CCCEEEEE
Confidence 99988654
No 128
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=60.58 E-value=11 Score=33.24 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=38.9
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
|.-|-+.+.+++|++++|++|++++||+. ++-|+-.... +..-+.|+..+.+.
T Consensus 9 g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~---~~QKLi~~~~-~Gk~l~D~~~L~~~ 61 (74)
T cd01813 9 GQEYSVTTLSEDTVLDLKQFIKTLTGVLP---ERQKLLGLKV-KGKPAEDDVKISAL 61 (74)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCH---HHEEEEeecc-cCCcCCCCcCHHHc
Confidence 77788999999999999999999999987 4566643111 12236677666655
No 129
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=59.98 E-value=28 Score=30.97 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=46.8
Q ss_pred EcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 712 LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 712 v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+..+.+|+++...|.+..|+|++..-.+|. + ..++.+.++....|++|++|.....
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~------G---k~L~D~~tL~~y~i~~~~~i~l~~~ 74 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQRLFYR------G---KQMEDGHTLFDYNVGLNDIIQLLVR 74 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHeEEEeC------C---EECCCCCCHHHcCCCCCCEEEEEEe
Confidence 567899999999999999999987766663 2 3477889999999999999988765
No 130
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=59.81 E-value=14 Score=34.32 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=31.6
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~ 627 (1087)
..++.|..++|+.+|+.+|.+.+++++++++||.-
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 35678889999999999999999999999999974
No 131
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=59.64 E-value=8.1 Score=34.45 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=26.6
Q ss_pred EeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 598 VQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
+..++|+.+++++|++..|++++++|||.
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~QrLi~ 47 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQRLFY 47 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHeEEEe
Confidence 56678999999999999999999999985
No 132
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=58.53 E-value=14 Score=32.44 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=29.1
Q ss_pred eEEEEeccccHHHHHHHHHHHhCC--CCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGI--PIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~w~ 626 (1087)
.++.+..++|+.+|++.|++..|+ +++++||+.
T Consensus 13 ~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~ 47 (77)
T cd01805 13 FPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY 47 (77)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE
Confidence 356788889999999999999999 999999974
No 133
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=57.00 E-value=28 Score=29.89 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=43.1
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEE
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1087)
+-++.+.+|.+|...|.++-|+|++..-.+|. . ..++...++....+.+|+.|..
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~-----g----~~l~d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPRDQKLIFK-----G----KERDDAETLDMSGVKDGSKVML 68 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChHHeEEeeC-----C----cccCccCcHHHcCCCCCCEEEE
Confidence 45788999999999999999999886555543 1 2345677888899999998754
No 134
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=55.86 E-value=19 Score=31.10 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=31.1
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEE
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKF 1052 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kf 1052 (1087)
|.++.|.|++..+|+.+.++++++.|++.. ++++|
T Consensus 10 ~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~--~~~~l 44 (72)
T PF11976_consen 10 GKEIKFKVKPTTTVSKLIEKYCEKKGIPPE--ESIRL 44 (72)
T ss_dssp SEEEEEEEETTSCCHHHHHHHHHHHTTTT---TTEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCcc--ceEEE
Confidence 889999999999999999999999999996 55665
No 135
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=54.50 E-value=13 Score=37.97 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.6
Q ss_pred ccCCccEEEEecCCCCHHHHHHHHHHHhC
Q 001393 1013 QNFGEPFFLVIHEGETLAEVKERIQRKLQ 1041 (1087)
Q Consensus 1013 ~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~ 1041 (1087)
.-||.||++.++ |.+..++-.-+++|++
T Consensus 105 ~kFGfpFii~v~-g~s~~~IL~~l~~Rl~ 132 (158)
T TIGR03180 105 EKFGRIFLIRAA-GRSAEEMLDALQARLP 132 (158)
T ss_pred HHCCCeEEEeeC-CCCHHHHHHHHHHHhC
Confidence 368999999999 9999999999999997
No 136
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=53.42 E-value=83 Score=28.83 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=45.6
Q ss_pred EEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceeccc-CcCCccccccCCCCCEEEEEeCC
Q 001393 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHL-DKRTSFRLSQIEDGDIICFQKSP 777 (1087)
Q Consensus 706 ~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i-~~~~t~~~~el~~GDIi~fQ~~~ 777 (1087)
-+-+...++.++|+.+...++++...+ ++.+||--- .++.- |.+ ++..|+..+.|.+|-.|+++...
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i~--~E~RLW~~~--~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNIQ--EETRLWNKY--SENSY-ELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-T--S-EEEEEEC--TTTCE-EEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCCC--ccceehhcc--CCcch-hhhCCCCccHHHccCcCCCEEEEEeec
Confidence 345566789999999999999999995 445666543 24433 666 45789999999999999999764
No 137
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=52.65 E-value=50 Score=29.45 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=47.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLE 670 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 670 (1087)
..+++++..++.+|...|++.|+.+++...|+......++-. .|+..+ ..|+++.+.+ .+..+.||+.
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~---v~l~~e---~~me~aW~~v---~~~~ltLwcq 76 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHW---VPISGE---ESLQRAWQDV---ADGPRGLQLQ 76 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccE---eecCcc---hHHHHHHHhc---cCCceEEEEe
Confidence 357889999999999999999999999999987543332111 234312 3577776433 3456888875
No 138
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=51.28 E-value=18 Score=32.10 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=35.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVF 1070 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~ 1070 (1087)
|-+|-+.+.+..|++++|++|+++.|++.. ..|+. ..++ -|+|+ .|.
T Consensus 11 G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~---~qrL~--~~Gk--~L~d~-~L~ 57 (78)
T cd01804 11 GTRFDLSVPPDETVEGLKKRISQRLKVPKE---RLALL--HRET--RLSSG-KLQ 57 (78)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCChH---HEEEE--ECCc--CCCCC-cHH
Confidence 889999999999999999999999998763 34542 2344 36665 444
No 139
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=50.92 E-value=41 Score=40.48 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=49.3
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCC--CCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeCCC
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDP--DEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPP 778 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~--dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~~ 778 (1087)
--+.+|.+.++.|++|.|.+.+|-.. .+.=.-|.=.+ ++. .+++++.|+.+..+.|||+|..+....
T Consensus 14 ~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r--~gG--~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 14 VDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALAR--AGG--SPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred eeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEec--CCC--CCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 34567889999999999999987532 12222344433 332 589999999999999999999997543
No 140
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=48.66 E-value=22 Score=28.24 Aligned_cols=31 Identities=32% Similarity=0.591 Sum_probs=27.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~ke 1046 (1087)
|....+.+.++.|++++++.|.+++|++..+
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~ 37 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQ 37 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHH
Confidence 8888999999999999999999999966544
No 141
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=47.46 E-value=45 Score=31.09 Aligned_cols=63 Identities=8% Similarity=0.021 Sum_probs=52.5
Q ss_pred EEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 706 ~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+--++.|+.+++|.+|...|.+..|.||+..-.+|. - . +..+...|+....|..|.+|+-=..
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d--G-----~-~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID--G-----K-ILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeec--C-----c-eeccCCccHHhcCCCCCCEEEEEec
Confidence 345667999999999999999999999987766665 2 1 5677888999999999999998764
No 142
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=46.86 E-value=28 Score=31.47 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.6
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCc
Q 001393 1020 FLVIHEGETLAEVKERIQRKLQVLD 1044 (1087)
Q Consensus 1020 ~~~v~~~E~~~~~k~Rl~~rl~v~~ 1044 (1087)
.|++.++.+|.++++.|++|+++.+
T Consensus 13 r~~l~~~~~~~~L~~~i~~r~~~~~ 37 (82)
T cd06407 13 RFRLPPSWGFTELKQEIAKRFKLDD 37 (82)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCC
Confidence 5788899999999999999999864
No 143
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=45.05 E-value=28 Score=30.67 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=36.3
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVF 1070 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~ 1070 (1087)
|.-+-+.+.++.|+.++|++|+..+|++... .|+ +-.++ -++|+..+.
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~---q~L--~~~G~--~L~d~~tL~ 54 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGK---QKL--QYEGI--FIKDSNSLA 54 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHH---EEE--EECCE--EcCCCCcHH
Confidence 7788899999999999999999999998843 343 22333 467765554
No 144
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=44.05 E-value=48 Score=30.36 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=41.4
Q ss_pred CceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEe
Q 001393 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1087)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 671 (1087)
.+.+-...+.+|+..+...+.+.|.+ .+..|||.... .|+.-+ |. ..+.|++++. -.....|.+|+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~-~~~~e~----L~--~~~~Tv~da~------L~~gQ~vliE~ 79 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYS-ENSYEL----LN--NPEITVEDAG------LYDGQVVLIEE 79 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECT-TTCEEE----E----TTSBTTTTT--------TTEEEEEEE
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccC-Ccchhh----hC--CCCccHHHcc------CcCCCEEEEEe
Confidence 35677888999999999999999999 77899998743 233222 21 1234555532 11245788888
Q ss_pred ec
Q 001393 672 EF 673 (1087)
Q Consensus 672 ~~ 673 (1087)
..
T Consensus 80 rn 81 (88)
T PF14836_consen 80 RN 81 (88)
T ss_dssp --
T ss_pred ec
Confidence 64
No 145
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=42.33 E-value=28 Score=31.25 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcccc
Q 001393 1019 FFLVIHEGETLAEVKERIQRKLQVLDEEF 1047 (1087)
Q Consensus 1019 F~~~v~~~E~~~~~k~Rl~~rl~v~~kef 1047 (1087)
|.+.+.++.|++++++.|++.++++...|
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~~~ 44 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDSSQ 44 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TTT-
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCcce
Confidence 56888999999999999999999998744
No 146
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=40.83 E-value=49 Score=39.37 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=47.1
Q ss_pred ceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCccccc-ccccccceEE
Q 001393 900 KNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIE-NINDQYWTLR 978 (1087)
Q Consensus 900 k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~-~i~~~~~~~~ 978 (1087)
+.+||+.-.++. +++|-|+.+.||.+|.+++...++.+ ..+++| |+.|||-| ++++... .|.| ..++.
T Consensus 14 ~~irV~Vkt~~d----k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvL--IfaGrILK--D~dTL~~~gI~D-g~TvH 82 (493)
T KOG0010|consen 14 SLIRVTVKTPKD----KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVL--IYAGRILK--DDDTLKQYGIQD-GHTVH 82 (493)
T ss_pred ceeEEEEecCCc----ceeEecccchHHHHHHHHHHHhcCCC--hhHeee--eecCcccc--ChhhHHHcCCCC-CcEEE
Confidence 447777766654 56899999999999999999999765 334444 68898887 4444222 2665 44443
No 147
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=39.86 E-value=81 Score=29.40 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=46.8
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
++-|..+++++-|+..-|++.|++-++==-||. + ..|+...|-...+..+||.||+=..
T Consensus 34 ~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFd------G---~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 34 VFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFD------G---QRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred EEEeecCChHHHHHHHHHHHcCCccceEEEEEC------C---cCcCCCCChhhhCCcCCcEEEEEee
Confidence 445789999999999999999999765433443 2 4678888999999999999997543
No 148
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=39.06 E-value=29 Score=35.39 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=23.7
Q ss_pred ccCCccEEEEecCCCCHHHHHHHHHHHhC
Q 001393 1013 QNFGEPFFLVIHEGETLAEVKERIQRKLQ 1041 (1087)
Q Consensus 1013 ~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~ 1041 (1087)
.-||.||++.|+ |-+-.++-.-+++|++
T Consensus 105 ~kFGfpFvi~v~-g~~~~~Il~~l~~Rl~ 132 (157)
T TIGR03164 105 ARFGFPFIMAVK-GKTKQSILAAFEARLN 132 (157)
T ss_pred HHCCCeeEEeeC-CCCHHHHHHHHHHHHC
Confidence 368999999998 5588888888888886
No 149
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=38.74 E-value=1.9e+02 Score=25.94 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhcc-CCCCCccEEEEEEeccEEEEecCCccccccc
Q 001393 902 LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVE-LSHPNAELRLLEVFYHKIYKIFAPNEKIENI 970 (1087)
Q Consensus 902 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~-~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~i 970 (1087)
++++.-.++.+.. .+++-++.+.||.||.+.+.+..+ .+ +..+.|| |++|| ++..+..|.+.
T Consensus 2 i~l~IK~~~~~~~-~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrL--Iy~GK---iLkD~~tL~~~ 64 (79)
T cd01790 2 VTLLIKSPNQKYE-DQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRL--IYSGK---LLPDHLKLRDV 64 (79)
T ss_pred eEEEEECCCCCeE-EEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEE--EEcCe---eccchhhHHHH
Confidence 4556656554432 345555889999999999988774 22 2234555 57886 56667777665
No 150
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=37.60 E-value=42 Score=26.48 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=28.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++...+|+.+++..+++.+|+++++++|+.
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~ 42 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV 42 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE
Confidence 456777789999999999999999999999865
No 151
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=37.36 E-value=32 Score=35.44 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=23.6
Q ss_pred ccCCccEEEEecCCCCHHHHHHHHHHHhC
Q 001393 1013 QNFGEPFFLVIHEGETLAEVKERIQRKLQ 1041 (1087)
Q Consensus 1013 ~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~ 1041 (1087)
.-||.||++.++ |-+-.++-.-+++|++
T Consensus 110 ~kFGfpFii~v~-g~s~~~IL~~l~~Rl~ 137 (166)
T PRK13798 110 EKFGFVFLICAT-GRSADEMLAALQQRLH 137 (166)
T ss_pred HhCCCeEEEeeC-CCCHHHHHHHHHHHhc
Confidence 368999999997 5588888888888886
No 152
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=36.91 E-value=59 Score=29.71 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=30.6
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEe
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEI 743 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEi 743 (1087)
.+.|+.+.++++++..|++++++++...|-||=.=
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn 53 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINN 53 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECC
Confidence 35589999999999999999999999999888643
No 153
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=36.24 E-value=97 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceE
Q 001393 814 DAFCLELSKQHSYDEVVERVARKIGLDDPSKIR 846 (1087)
Q Consensus 814 ~~f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr 846 (1087)
+-..+.+...++|+||.++|-+++++..|-.|+
T Consensus 12 Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iK 44 (86)
T cd06408 12 DTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIK 44 (86)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEE
Confidence 468999999999999999999999986544444
No 154
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=33.80 E-value=1.1e+02 Score=27.45 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=33.2
Q ss_pred EeEEEEcCCCChhHHHHHHHHhcCCC-CCCcEEEEEEee
Q 001393 707 VGRLFLKSSSKPIEILRKLNQMAGFD-PDEEIELYEEIK 744 (1087)
Q Consensus 707 ~g~~~v~~~~~v~~l~~~i~~~~g~p-~dt~l~lyEEik 744 (1087)
.-++.|+.+.+..++++.+.++.|+. ....-.|||.+.
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~ 52 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLG 52 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEEC
Confidence 35677899999999999999999999 667889999884
No 155
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=32.59 E-value=61 Score=28.93 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCCCccccCcchHHHhhcc
Q 001393 815 AFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVH 876 (1087)
Q Consensus 815 ~f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 876 (1087)
.|.+.+....+|.+|...|+++|++ .|++++|.=-.+ +++. .-+.......+.+.+..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l-~~~~~~LSY~~~--~~~~-~~v~l~~e~~me~aW~~ 65 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQ-QAQRGQLSYRAP--GEDG-HWVPISGEESLQRAWQD 65 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcC-ChhhcEEEecCC--CCCc-cEeecCcchHHHHHHHh
Confidence 3778888999999999999999997 589988754212 1110 11222334667777743
No 156
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=32.45 E-value=1.3e+02 Score=27.03 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=43.0
Q ss_pred EEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCC-CcEEEEEEeecCCCceecccCcCC
Q 001393 693 FFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPD-EEIELYEEIKFEPCVMCEHLDKRT 758 (1087)
Q Consensus 693 FlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~d-t~l~lyEEik~~p~~~ie~i~~~~ 758 (1087)
++|.|+.....=.-.-++.|+.+.++.+++..+.+++|++.+ ....|||... ..+ ....+.+..
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~-~~~-~er~L~~~E 68 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEE-SGG-EERPLDDDE 68 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEEC-TTT-EEEEETTTS
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEc-CCC-EEEEcCCCC
Confidence 567776654432245678899999999999999999999433 5678875443 233 324555533
No 157
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=31.86 E-value=1.6e+02 Score=25.98 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=52.8
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1087)
.+.|=+|+-|-. ++ ......+++|++|...|...++-+......|+--. |...+...+ +.||..+.|..+
T Consensus 6 ~~~I~vRlpdG~--~l----~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~---Pr~~l~~~~-~~tl~e~~l~p~ 75 (82)
T PF00789_consen 6 VVRIQVRLPDGS--RL----QRRFPKSDTLQDLYDFVESQLFSPEESDFELITAF---PRRELTDED-SKTLEEAGLLPS 75 (82)
T ss_dssp EEEEEEEETTST--EE----EEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESS---STEECCSTT-TSBTCCCTTSSC
T ss_pred EEEEEEECCCCC--EE----EEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCC---CCcCCCccc-cccHHHhcCCCC
Confidence 355566665533 22 12345899999999999998887765556665443 654444444 689999999999
Q ss_pred CEEEEEe
Q 001393 769 DIICFQK 775 (1087)
Q Consensus 769 DIi~fQ~ 775 (1087)
..|+.++
T Consensus 76 ~~l~v~~ 82 (82)
T PF00789_consen 76 ATLIVEK 82 (82)
T ss_dssp EEEEEE-
T ss_pred eEEEEEC
Confidence 9998874
No 158
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=31.73 E-value=56 Score=28.20 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=35.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
| ++.+.+.+..|.+++|+.|+++.|++..++ + ++..++ -|+|+..|.+
T Consensus 10 g-~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~---~--Li~~Gk--~L~d~~tL~~ 57 (71)
T cd01808 10 D-KEEIEIAEDASVKDFKEAVSKKFKANQEQL---V--LIFAGK--ILKDTDTLTQ 57 (71)
T ss_pred C-CEEEEECCCChHHHHHHHHHHHhCCCHHHE---E--EEECCe--EcCCCCcHHH
Confidence 5 578999999999999999999999876443 3 343444 4777765543
No 159
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=31.70 E-value=82 Score=29.91 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=33.7
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEec-----CCcccccCchh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSL-----GRPEYLVDTDT 1068 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~-----~~~~y~~d~~~ 1068 (1087)
|.==.|.|..=-+-.++++|+.+|||+++ ....|-+.++.. +....|.|.+.
T Consensus 10 G~tk~VNV~~c~~a~eI~~rvLKKfg~~~-~~~~~~~~v~d~~~~~~~~~~~LsD~EL 66 (105)
T PF14847_consen 10 GSTKTVNVSGCFNAQEIKRRVLKKFGLPE-HPRNYCFYVLDGESPDPSNCRPLSDVEL 66 (105)
T ss_dssp TEEEEEE--S--HHHHHHHHHHHHHTSS---CCCEEEEEE-S-----SSEEEE-SSHH
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHcCCcc-ccccceEEEecccccccccceECcHHHH
Confidence 33334555555578899999999999999 999999999965 44666777653
No 160
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=31.25 E-value=40 Score=28.64 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=24.0
Q ss_pred CcccccccCeeeceee-eEe--ccCCCeEEEEEeeEE
Q 001393 361 NKYHAEEHGLQDAKKG-VLF--IDFPPVLQLQLKRFE 394 (1087)
Q Consensus 361 n~y~C~~c~~~~a~k~-~~i--~~lP~vL~i~LkRf~ 394 (1087)
+.+.|++||....... +.. ..+.+++-||.++|.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 4567999986554333 222 358899999999996
No 161
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=31.04 E-value=1.6e+02 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.342 Sum_probs=26.2
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCc
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLD 1044 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~ 1044 (1087)
|.-+.|.+.++-+|.+++.+|++++++..
T Consensus 10 ~~~~~~~~~~~~s~~dL~~~i~~~~~~~~ 38 (81)
T smart00666 10 GETRRLSVPRDISFEDLRSKVAKRFGLDN 38 (81)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 56778999999999999999999999876
No 162
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=30.43 E-value=1.3e+02 Score=26.94 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=42.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEe
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 671 (1087)
.-|...+.++++++.-|... |.+++.++|- |.=|.+.+...+.++||.++. ..+.-.||||.
T Consensus 18 ~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~--------t~fPRk~~~~~d~~~TL~e~g------L~p~~~L~Vee 79 (80)
T cd01771 18 ERRFLGDTPLQVLLNFVASK-GYPIDEYKLL--------SSWPRRDLTQLDPNFTLLELK------LYPQETLILEE 79 (80)
T ss_pred EEEeCCCCcHHHHHHHHHhc-CCCCCCEEEe--------cCCCCCCCcCCCCCCcHHHcC------CCCCcEEEEEc
Confidence 45778899999999999654 7776656553 234666666555567888863 11345788884
No 163
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=29.91 E-value=1.6e+02 Score=28.79 Aligned_cols=63 Identities=11% Similarity=0.242 Sum_probs=45.0
Q ss_pred EE-EEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEeec
Q 001393 595 SF-RVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (1087)
Q Consensus 595 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 673 (1087)
.| -|++++|+.+|...|.+.+++++++ ++..+ |+++-| ...||+++++.. ++.+--||+-.+.
T Consensus 43 KfllVP~d~tV~qF~~iIRkrl~l~~~k--~flfV---nn~lp~--------~s~~mg~lYe~~---KDeDGFLYi~Ys~ 106 (121)
T PTZ00380 43 HFLALPRDATVAELEAAVRQALGTSAKK--VTLAI---EGSTPA--------VTATVGDIADAC---KRDDGFLYVSVRT 106 (121)
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCChhH--EEEEE---CCccCC--------ccchHHHHHHHh---cCCCCeEEEEEcc
Confidence 45 6999999999999999999999998 34444 334311 135899998643 3446668887754
No 164
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=29.02 E-value=2.4e+02 Score=24.72 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=30.1
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~ 627 (1087)
...++++...++.+|+++|++.++.+...++|...
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 56788999999999999999999988777887544
No 165
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=28.88 E-value=59 Score=29.19 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=24.3
Q ss_pred EEeccccHHHHHHHHHHHhC--CCCCceEEEE
Q 001393 597 RVQKQTSFMAFKEEIAKEFG--IPIQLQRFWI 626 (1087)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~--~~~~~~r~w~ 626 (1087)
.+..++|+.+|+++|++..+ .+++++||-.
T Consensus 19 e~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy 50 (79)
T cd01790 19 SCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY 50 (79)
T ss_pred ecCCcChHHHHHHHHHHhcCCCCChhHeEEEE
Confidence 34678899999999999885 4579999854
No 166
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=28.75 E-value=1e+02 Score=27.01 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=31.2
Q ss_pred cCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeE
Q 001393 1014 NFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWK 1051 (1087)
Q Consensus 1014 ~fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~K 1051 (1087)
..|.+=.+.+++|+|..|.-.++-+|-|+......=+.
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~ 45 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRL 45 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 45889999999999999999999999999998877663
No 167
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=28.68 E-value=44 Score=31.94 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=33.4
Q ss_pred ecccCCCCceEEEEeccccHHHHHHHHHHHhC-------CCCCceEEEE
Q 001393 585 FDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFG-------IPIQLQRFWI 626 (1087)
Q Consensus 585 ~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~r~w~ 626 (1087)
|-|.|-..+-++++..++|+.+++++|++.-+ .+++++||-.
T Consensus 9 frl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy 57 (113)
T cd01814 9 FRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS 57 (113)
T ss_pred EEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe
Confidence 56666656778899999999999999997763 5588898753
No 168
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=28.35 E-value=1.6e+02 Score=31.18 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCcccccccccccceEEEEe
Q 001393 902 LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEE 981 (1087)
Q Consensus 902 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~i~~~~~~~~~e~ 981 (1087)
++|...++.+.- ..+...|+..||++|.++|-..+|-+.++.+|-|++....+....=+++..+..+.. .+.+|+-.
T Consensus 2 v~v~Iss~~~~~--~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~-~Dg~rihv 78 (234)
T KOG3206|consen 2 VRVVISSSLNDF--RTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKV-EDGLRIHV 78 (234)
T ss_pred eEEEEecccccc--hhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCC-CCceEEEE
Confidence 445554444432 345678999999999999999999887888999999887777666666777766643 44666655
Q ss_pred ccccc
Q 001393 982 IPEEE 986 (1087)
Q Consensus 982 iP~~e 986 (1087)
|-...
T Consensus 79 iD~~~ 83 (234)
T KOG3206|consen 79 IDSNA 83 (234)
T ss_pred EecCc
Confidence 54443
No 169
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=95 Score=28.26 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=34.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCC
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRP 640 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~ 640 (1087)
.-|+|+++++|+.|.+..++.-|...+.+|+..= +..++|++.
T Consensus 37 lfFkiKktT~f~klm~af~~rqGK~m~slRfL~d----G~rI~~dqT 79 (103)
T COG5227 37 LFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFD----GKRIDLDQT 79 (103)
T ss_pred EEEEEeccchHHHHHHHHHHHhCcCcceeEEEEc----ceecCCCCC
Confidence 4589999999999999999999999999998652 344555553
No 170
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=28.30 E-value=91 Score=29.54 Aligned_cols=33 Identities=6% Similarity=0.233 Sum_probs=27.1
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEE
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~ly 740 (1087)
..+.|+.+.+|++++-.|++++.+++++.|-||
T Consensus 35 ~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~ 67 (104)
T PF02991_consen 35 KKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLF 67 (104)
T ss_dssp SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEE
T ss_pred cEEEEcCCCchhhHHHHhhhhhcCCCCceEEEE
Confidence 455689999999999999999999999999888
No 171
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=28.08 E-value=2e+02 Score=27.14 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=32.6
Q ss_pred EEEeCCCCCHHHHHHHHHhhccCCCC-CccEEEEEEe
Q 001393 918 NIRLPKQSTVGDVINELKTKVELSHP-NAELRLLEVF 953 (1087)
Q Consensus 918 ~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lrl~~v~ 953 (1087)
+++|..+.++.+++.++..|+|+.++ .....|.+|.
T Consensus 19 SIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 19 TILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred EEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 79999999999999999999999875 5789999985
No 172
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=27.16 E-value=96 Score=29.79 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=30.7
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEE
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEE 742 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEE 742 (1087)
-.+.|+.+.+|++++-.|++++++++++.|-||=.
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn 77 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVN 77 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhCCCccceEEEEEC
Confidence 35569999999999999999999999999888753
No 173
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=26.97 E-value=53 Score=30.16 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=26.7
Q ss_pred ccccHHHHHHHHHHHhCCCCCceEEEEEee
Q 001393 600 KQTSFMAFKEEIAKEFGIPIQLQRFWIWAK 629 (1087)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~ 629 (1087)
.+.|+-|++..++-.+.-|++.+|||.|..
T Consensus 20 es~tV~elK~~l~gi~~~Pvn~qrL~kmd~ 49 (110)
T KOG4495|consen 20 ESSTVFELKRKLEGILKRPVNEQRLYKMDT 49 (110)
T ss_pred ccccHHHHHHHHHHHHhCCCcchheeecCH
Confidence 456899999999999999999999999864
No 174
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=25.99 E-value=3e+02 Score=25.78 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.2
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRF 624 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 624 (1087)
.+-+.|.++.++.+|..++++.++++.. +.+
T Consensus 24 tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~l 54 (97)
T cd06410 24 TRIVSVDRSISFKELVSKLSELFGAGVV-VTL 54 (97)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEE
Confidence 3568899999999999999999999866 444
No 175
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=25.93 E-value=1.8e+02 Score=27.25 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=42.9
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCC--cccccCchhhhhhccccc
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGR--PEYLVDTDTVFNRFQVCF 1077 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~--~~y~~d~~~~~~~~~~~~ 1077 (1087)
|.==.+.|..+.+|.+++.||.+.++++.. -.+|+.+-..+. -.=+.+|+-+.++++++.
T Consensus 22 G~tr~i~V~r~~s~~el~~kl~~~~~~~~~--~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~ 83 (97)
T cd06410 22 GETRIVSVDRSISFKELVSKLSELFGAGVV--VTLKYQLPDEDLDALISVSNDEDLKNMMEEYD 83 (97)
T ss_pred CceEEEEEcCCCCHHHHHHHHHHHhCCCCc--eEEEEEcCCCCcceeEEecCcHHHHHHHHhhc
Confidence 555568888999999999999999999876 455665442221 122456667888888876
No 176
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=24.29 E-value=1.8e+02 Score=25.48 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=29.5
Q ss_pred CccEEEEec-CCCCHHHHHHHHHHHhCCCccccceeEEEEE
Q 001393 1016 GEPFFLVIH-EGETLAEVKERIQRKLQVLDEEFSKWKFAFL 1055 (1087)
Q Consensus 1016 G~PF~~~v~-~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv 1055 (1087)
|--+.|.+. .+-+|.+++.+|.++++++. ..+++...
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~---~~~~l~y~ 46 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDA---VSFKLKYP 46 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCC---CcEEEEee
Confidence 567788888 88899999999999999986 44444444
No 177
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=24.21 E-value=1.8e+02 Score=26.55 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=32.0
Q ss_pred EEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEec
Q 001393 918 NIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFY 954 (1087)
Q Consensus 918 ~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~ 954 (1087)
.+.|+-+.|..++++.|.+|+.+.+...+.-||+++.
T Consensus 16 ~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh~ 52 (87)
T cd01784 16 NVRINSTMTTPQVLKLLLNKFKIENSAEEFALYIVHT 52 (87)
T ss_pred EEEEecCCCHHHHHHHHHHhccccCCHHHeEEEEEee
Confidence 4677778899999999999999877778999999963
No 178
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.73 E-value=1.4e+02 Score=27.94 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=31.2
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..-|+|.++++++.|.+.-++..|++.+.+|+..
T Consensus 32 ~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlF 65 (99)
T KOG1769|consen 32 VVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLF 65 (99)
T ss_pred EEEEEeecCChHHHHHHHHHHHcCCccceEEEEE
Confidence 4578999999999999999999999999999865
No 179
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=23.05 E-value=3.6e+02 Score=23.68 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=29.1
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~ 628 (1087)
.+.++...++.+|+..|++.++.+...+++...+
T Consensus 15 ~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 15 IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 3788889999999999999999987778876654
No 180
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=22.84 E-value=3.2e+02 Score=24.62 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=42.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCC-CceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPI-QLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFL 669 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (1087)
...++++.+.++.+|++.|++.+++.. ..+.|=..+.- |..+ .|.. +.-|++.......++...++|+|
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde-gd~v----~lts---d~DL~eai~i~~~~~~~~v~l~v 80 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD-EEWV----LLTC---DADLEECIDVYRSSGSHTIRLLV 80 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC-CCeE----Eeec---HHHHHHHHHHHHHCCCCeEEEEe
Confidence 457888999999999999999999865 45666444322 2221 1221 12344444444444445677776
No 181
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=22.82 E-value=3.3e+02 Score=24.17 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=50.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEe-cCCcccccCchhhhhhcccccceeeE
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLS-LGRPEYLVDTDTVFNRFQVCFLSIIF 1082 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~-~~~~~y~~d~~~~~~~~~~~~~~~~~ 1082 (1087)
+.++.+.|.|-++...+|+.|++..|++.. -++++=. .++-..|.+..-|++.=-||...|..
T Consensus 10 ~~dl~l~vnPy~pI~k~K~kI~~~~~~~g~----qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~l 73 (80)
T cd01811 10 YSDWILRVNPYSPIRKIKEKIRRSRNCSGL----QRLSFQEPGGERQLLSSRKSLADYGIFSKTNICL 73 (80)
T ss_pred CCceEEEeCCcchHHHHHHHHHHhhCcccc----eEEEeecCCcccccccccccHhhhcceeccEEEE
Confidence 678999999999999999999999999982 4555543 45566788888888888888777653
No 182
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=22.78 E-value=2e+02 Score=37.06 Aligned_cols=95 Identities=23% Similarity=0.347 Sum_probs=67.7
Q ss_pred chHHHhhcccCC-ccceEEEEEecCChhhhccCceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCC--C-C
Q 001393 868 EHLSDMLVHYNQ-TSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELS--H-P 943 (1087)
Q Consensus 868 ~~l~~~l~~~~~-~~~~l~YevL~~pl~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~--~-~ 943 (1087)
-.|++++..-+. +.+.. -|+-|-.+||-.-.|+++|...+-+ +..--+.|.-+.|+.|+++.|.+|+-=+ - +
T Consensus 11 e~la~iiqqWNaNRLDLF---~lS~PtEdLefhGVMRFYFQDag~k-vaTKCiRVsStATt~dVidtL~EKFrPDmrMLS 86 (1629)
T KOG1892|consen 11 EKLADIIQQWNANRLDLF---ELSQPTEDLEFHGVMRFYFQDAGGK-VATKCIRVSSTATTQDVIDTLAEKFRPDMRMLS 86 (1629)
T ss_pred HHHHHHHHHhccccccee---eccCCCccceeeeeEEEEeecccch-hhhheeEecccccHHHHHHHHHHHhCcchhhhc
Confidence 468888865332 33332 3888999999999999999987644 4344689999999999999999998521 1 3
Q ss_pred CccEEEEEEe-ccEEEEecCCcccc
Q 001393 944 NAELRLLEVF-YHKIYKIFAPNEKI 967 (1087)
Q Consensus 944 ~~~lrl~~v~-~~k~~~~~~~~~~i 967 (1087)
.-+.-||||+ ||- -++...+.++
T Consensus 87 ~p~YsLyEVH~nGE-RrL~~dEKPL 110 (1629)
T KOG1892|consen 87 SPKYSLYEVHVNGE-RRLDIDEKPL 110 (1629)
T ss_pred CCCceeeeeecCcc-cccCcccCce
Confidence 4578899997 454 4444444444
No 183
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=22.36 E-value=1.8e+02 Score=26.66 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhhccCCCC-CccEEEEEEeccEEEEecCCcc
Q 001393 916 IHNIRLPKQSTVGDVINELKTKVELSHP-NAELRLLEVFYHKIYKIFAPNE 965 (1087)
Q Consensus 916 ~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lrl~~v~~~k~~~~~~~~~ 965 (1087)
...+-+.++.+..++++.+.++++++++ ..=.-||++.++-|.+=+.+.|
T Consensus 13 ~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~~~f~RKL~dfE 63 (87)
T cd01777 13 TVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVINHSFVRKLAPNE 63 (87)
T ss_pred EEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEecceEEEeccCcc
Confidence 3467788899999999999999999976 4558889998877777666655
No 184
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.23 E-value=1.8e+02 Score=26.63 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~k 1045 (1087)
|--=.|.+.+.+.+.++++-|.+|+|+.+.
T Consensus 10 GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 10 GRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 333478889999999999999999998874
No 185
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.19 E-value=1.8e+02 Score=34.25 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=53.4
Q ss_pred EEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcC---CCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAG---FDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 691 llFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g---~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
-|++|..+-.+ -.+-|..+.+|.+|...|.+.-| +|.+..-.+|. + ..++...++....|.+
T Consensus 2 kItVKtl~g~~------~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~------G---kiL~Dd~tL~dy~I~e 66 (378)
T TIGR00601 2 TLTFKTLQQQK------FKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS------G---KILSDDKTVREYKIKE 66 (378)
T ss_pred EEEEEeCCCCE------EEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC------C---EECCCCCcHHHcCCCC
Confidence 46777765432 12467889999999999999988 88776555553 2 2467778999999999
Q ss_pred CCEEEEEeC
Q 001393 768 GDIICFQKS 776 (1087)
Q Consensus 768 GDIi~fQ~~ 776 (1087)
||.|++-..
T Consensus 67 ~~~Ivvmv~ 75 (378)
T TIGR00601 67 KDFVVVMVS 75 (378)
T ss_pred CCEEEEEec
Confidence 999998765
No 186
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=21.40 E-value=1.4e+02 Score=26.92 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=0.0
Q ss_pred EEEecCCC--CHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCch
Q 001393 1020 FLVIHEGE--TLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTD 1067 (1087)
Q Consensus 1020 ~~~v~~~E--~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~ 1067 (1087)
.|.+.+.+ +|.++++.+++++++. .+.+ .|++||.
T Consensus 13 rf~~~~~~~~~~~~L~~ev~~rf~l~-----~f~l--------KYlDde~ 49 (81)
T cd06396 13 SFLVSDSENTTWASVEAMVKVSFGLN-----DIQI--------KYVDEEN 49 (81)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhCCC-----ccee--------EEEcCCC
No 187
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=21.23 E-value=3.2e+02 Score=25.53 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=34.8
Q ss_pred EEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCcc
Q 001393 917 HNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNE 965 (1087)
Q Consensus 917 ~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~ 965 (1087)
.++-.|-+.||+||+..|.+|.-++++ ++.+++=-. |...+++.+.+
T Consensus 15 ~Tls~~l~tTv~eli~~L~rK~~l~~~-~ny~l~l~~-~~l~RvL~p~E 61 (97)
T cd01775 15 TTLSCPLNTTVSELIPQLAKKFYLPSG-GNYQLSLKK-HDLSRVLRPTE 61 (97)
T ss_pred EEEEcCCcCcHHHHHHHHHHhhcCCCC-CCeEEEEEE-CCeeeecCCcC
Confidence 378889999999999999999988765 454444322 44557777766
No 188
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=20.30 E-value=1.1e+02 Score=26.93 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred eccccHHHHHHHHHHHhCC-CCCceEEE
Q 001393 599 QKQTSFMAFKEEIAKEFGI-PIQLQRFW 625 (1087)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~-~~~~~r~w 625 (1087)
+.+.|+.+|+..+++..+. +++++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~ 47 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLR 47 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEE
Done!