Query 001393
Match_columns 1087
No_of_seqs 632 out of 2549
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 01:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ylm_A Ubiquitin carboxyl-term 100.0 1E-103 4E-108 942.2 51.0 497 558-1077 4-511 (530)
2 2f1z_A Ubiquitin carboxyl-term 100.0 7.8E-93 2.7E-97 859.4 41.9 493 48-560 26-522 (522)
3 1nb8_A Ubiquitin carboxyl-term 100.0 2.2E-68 7.4E-73 614.7 32.3 353 191-560 1-353 (353)
4 2y6e_A Ubiquitin carboxyl-term 100.0 9.9E-57 3.4E-61 520.7 29.0 299 191-523 3-360 (367)
5 3nhe_A Ubiquitin carboxyl-term 100.0 3.4E-56 1.2E-60 511.7 26.1 301 189-524 2-345 (348)
6 2gfo_A Ubiquitin carboxyl-term 100.0 3.3E-55 1.1E-59 512.3 28.4 298 191-522 57-396 (396)
7 3i3t_A Ubiquitin carboxyl-term 100.0 2.4E-55 8.4E-60 506.0 23.8 293 194-523 1-352 (355)
8 2ayn_A Ubiquitin carboxyl-term 100.0 1.2E-54 4E-59 509.8 22.8 302 193-523 11-395 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 7.2E-54 2.5E-58 504.8 28.9 299 191-522 19-414 (415)
10 3mhs_A Ubiquitin carboxyl-term 100.0 1E-51 3.4E-56 495.1 26.8 299 191-522 136-474 (476)
11 3ihp_A Ubiquitin carboxyl-term 100.0 2.7E-49 9.4E-54 497.9 26.3 223 191-420 339-621 (854)
12 2vhf_A Ubiquitin carboxyl-term 99.9 9.6E-25 3.3E-29 242.3 10.3 220 196-471 9-308 (374)
13 2foj_A Ubiquitin carboxyl-term 99.9 1.1E-23 3.6E-28 213.2 12.8 133 48-182 14-150 (155)
14 2kvr_A Ubiquitin carboxyl-term 99.9 4.6E-24 1.6E-28 206.1 8.1 128 535-671 1-130 (130)
15 3ivv_A Speckle-type POZ protei 99.9 3.2E-23 1.1E-27 207.3 11.0 131 47-182 5-145 (145)
16 4gjh_A TNF receptor-associated 99.8 3.4E-22 1.2E-26 206.6 4.5 133 49-181 20-174 (178)
17 4ghu_A TNF receptor-associated 99.8 1.5E-21 5.1E-26 204.5 3.4 134 49-184 36-191 (198)
18 1ca9_A TRAF2, protein (TNF rec 99.8 4E-21 1.4E-25 201.2 3.8 130 50-181 40-191 (192)
19 1lb6_A TNF receptor-associated 99.8 1.1E-20 3.8E-25 192.0 5.6 130 51-182 3-158 (160)
20 1d00_A Tumor necrosis factor r 99.8 1.4E-20 4.8E-25 192.9 5.0 130 50-181 16-167 (168)
21 2gkw_A TNF receptor-associated 99.8 1.8E-20 6.2E-25 195.9 2.0 129 51-181 38-188 (192)
22 1flk_A TNF receptor associated 99.8 8.9E-20 3E-24 195.7 3.1 130 50-181 73-224 (228)
23 3hqi_A Speckle-type POZ protei 99.8 5.9E-19 2E-23 199.2 9.8 127 51-182 5-141 (312)
24 4gwm_A Meprin A subunit beta; 98.7 7.7E-09 2.6E-13 123.7 6.0 138 40-181 393-567 (592)
25 2ylm_A Ubiquitin carboxyl-term 97.4 0.01 3.4E-07 70.9 23.1 228 593-850 254-489 (530)
26 3u30_A Ubiquitin, linear DI-ub 96.2 0.052 1.8E-06 54.8 13.5 133 594-773 33-165 (172)
27 3b08_A Polyubiquitin-C, ubiqui 96.1 0.067 2.3E-06 52.5 13.6 135 594-775 13-147 (152)
28 3mp2_A Non-structural protein 96.1 0.044 1.5E-06 56.4 12.0 190 187-478 4-195 (211)
29 3rt3_B Ubiquitin-like protein 96.0 0.041 1.4E-06 54.7 11.6 138 594-775 15-152 (159)
30 3u30_A Ubiquitin, linear DI-ub 95.9 0.13 4.5E-06 51.8 15.1 134 900-1071 19-154 (172)
31 3b08_A Polyubiquitin-C, ubiqui 95.8 0.35 1.2E-05 47.2 17.2 122 916-1072 12-135 (152)
32 3rt3_B Ubiquitin-like protein 94.1 1.1 3.7E-05 44.2 15.3 124 916-1072 14-140 (159)
33 2fe8_A PP1AB, ORF1AB, replicas 93.6 0.68 2.3E-05 50.6 13.6 82 187-289 93-175 (315)
34 2io1_B Small ubiquitin-related 89.9 0.71 2.4E-05 41.5 7.2 75 687-776 5-79 (94)
35 2io0_B Small ubiquitin-related 89.3 1.1 3.6E-05 40.1 7.8 74 688-776 4-77 (91)
36 3goe_A DNA repair protein RAD6 88.2 0.92 3.1E-05 38.8 6.0 56 710-773 24-79 (82)
37 1wm3_A Ubiquitin-like protein 86.0 0.95 3.2E-05 38.4 5.2 56 709-773 15-70 (72)
38 2k8h_A Small ubiquitin protein 85.6 1.4 4.7E-05 40.8 6.4 76 686-776 23-98 (110)
39 3kyd_D Small ubiquitin-related 85.1 2.4 8.1E-05 39.5 7.7 71 688-773 39-109 (115)
40 2eke_C Ubiquitin-like protein 84.9 3.4 0.00012 37.9 8.6 75 685-775 27-101 (106)
41 4dbg_A Ranbp-type and C3HC4-ty 84.5 0.98 3.3E-05 41.4 4.8 36 592-628 37-72 (105)
42 3dbh_I NEDD8; cell cycle, acti 84.2 2.4 8.1E-05 36.9 7.2 73 687-774 10-82 (88)
43 2d07_B Ubiquitin-like protein 84.1 2.1 7.2E-05 38.3 6.7 73 687-774 15-87 (93)
44 3a4r_A Nfatc2-interacting prot 84.1 1.1 3.8E-05 38.7 4.8 72 688-773 6-77 (79)
45 3plu_A Ubiquitin-like modifier 83.9 1.2 4.2E-05 39.7 5.0 33 594-626 34-66 (93)
46 4a3p_A Ubiquitin carboxyl-term 83.6 2.3 7.9E-05 44.3 7.9 68 593-673 141-209 (217)
47 3plu_A Ubiquitin-like modifier 83.4 1.8 6.2E-05 38.6 5.9 70 688-772 20-89 (93)
48 3v6c_B Ubiquitin; structural g 83.3 3 0.0001 36.8 7.4 74 686-774 14-87 (91)
49 1wz0_A Ubiquitin-like protein 83.0 2.6 9E-05 38.5 7.0 74 687-775 22-95 (104)
50 2kjr_A CG11242; UBL, ubiquitin 82.9 12 0.0004 33.5 11.2 81 686-774 12-93 (95)
51 2uyz_B Small ubiquitin-related 82.3 1.6 5.6E-05 37.3 5.2 71 690-775 4-74 (79)
52 2kjr_A CG11242; UBL, ubiquitin 81.7 1.7 6E-05 39.0 5.2 35 594-628 30-64 (95)
53 1wyw_B Ubiquitin-like protein 81.5 2 6.8E-05 38.6 5.6 75 686-775 18-92 (97)
54 1wjn_A Tubulin-folding protein 81.1 5.1 0.00018 35.8 8.2 66 710-776 27-92 (97)
55 3n3k_B Ubiquitin; hydrolase, p 80.8 2.5 8.6E-05 36.5 5.9 72 690-776 4-75 (85)
56 4b6w_A Tubulin-specific chaper 80.6 1.2 4E-05 39.3 3.7 34 594-627 17-50 (86)
57 4hcn_B Polyubiquitin, ubiquiti 80.1 2.2 7.6E-05 38.3 5.4 75 686-775 19-93 (98)
58 2jxx_A Nfatc2-interacting prot 80.0 4 0.00014 36.8 6.9 70 691-773 25-95 (97)
59 4a3p_A Ubiquitin carboxyl-term 79.7 5.3 0.00018 41.6 8.9 67 708-777 142-209 (217)
60 2l76_A Nfatc2-interacting prot 79.6 1.7 5.8E-05 38.8 4.2 58 707-773 32-89 (95)
61 3mtn_B UBA80, ubcep1, ubiquiti 79.5 3.7 0.00013 35.3 6.5 73 689-776 3-75 (85)
62 2kj6_A Tubulin folding cofacto 79.3 2.2 7.5E-05 38.5 5.0 36 593-628 28-63 (97)
63 2kj6_A Tubulin folding cofacto 79.2 12 0.00039 33.7 9.8 82 687-775 12-94 (97)
64 2dzi_A Ubiquitin-like protein 79.2 6 0.0002 33.6 7.8 72 688-774 6-77 (81)
65 3phx_B Ubiquitin-like protein 78.1 4.6 0.00016 34.4 6.6 71 689-774 4-74 (79)
66 2bwf_A Ubiquitin-like protein 77.7 8.9 0.0003 32.2 8.3 70 690-775 5-74 (77)
67 4efo_A Serine/threonine-protei 77.6 3.2 0.00011 37.1 5.4 31 1016-1046 23-53 (94)
68 4eew_A Large proline-rich prot 77.4 6.3 0.00022 34.3 7.5 61 1016-1085 27-87 (88)
69 3a9j_A Ubiquitin; protein comp 77.1 3.5 0.00012 34.6 5.5 70 692-776 3-72 (76)
70 3tix_A Ubiquitin-like protein 77.0 4.4 0.00015 40.9 6.8 76 685-776 53-128 (207)
71 3n3k_B Ubiquitin; hydrolase, p 76.8 2.2 7.4E-05 36.9 4.2 33 594-626 16-48 (85)
72 1ndd_A NEDD8, protein (ubiquit 76.7 3.5 0.00012 34.5 5.4 69 692-775 3-71 (76)
73 3jyu_A Ubiquitin carboxyl-term 76.7 6.2 0.00021 41.5 8.5 67 708-777 154-221 (231)
74 3a9j_A Ubiquitin; protein comp 76.2 4.6 0.00016 33.7 6.0 49 1016-1071 10-58 (76)
75 3jyu_A Ubiquitin carboxyl-term 76.0 3.2 0.00011 43.7 5.9 67 594-673 154-221 (231)
76 3mtn_B UBA80, ubcep1, ubiquiti 75.9 2.7 9.2E-05 36.2 4.6 33 594-626 16-48 (85)
77 2uyz_B Small ubiquitin-related 75.9 2.9 0.0001 35.6 4.7 33 594-626 16-48 (79)
78 1v6e_A Cytoskeleton-associated 75.6 2.2 7.6E-05 38.1 4.0 35 593-627 20-54 (95)
79 3phx_B Ubiquitin-like protein 74.7 3.3 0.00011 35.3 4.8 33 594-626 17-49 (79)
80 4fbj_B NEDD8; effector-HOST ta 74.7 4.2 0.00015 35.6 5.5 71 691-776 2-72 (88)
81 2kk8_A Uncharacterized protein 74.4 3.4 0.00011 36.1 4.8 33 594-626 23-55 (84)
82 4eew_A Large proline-rich prot 74.2 3.6 0.00012 35.9 5.0 33 594-626 30-62 (88)
83 1wh3_A 59 kDa 2'-5'-oligoadeny 74.2 6 0.00021 34.3 6.4 74 688-776 6-79 (87)
84 1uh6_A Ubiquitin-like 5; beta- 74.2 3.9 0.00013 37.1 5.1 33 594-626 41-73 (100)
85 1wh3_A 59 kDa 2'-5'-oligoadeny 73.7 4 0.00014 35.5 5.1 33 594-626 20-52 (87)
86 1wx7_A Ubiquilin 3; ubiquitin- 73.7 11 0.00038 34.1 8.4 74 687-776 15-88 (106)
87 2hj8_A Interferon-induced 17 k 73.3 8.5 0.00029 33.6 7.2 73 689-776 4-76 (88)
88 1uh6_A Ubiquitin-like 5; beta- 73.1 5.8 0.0002 35.9 6.0 70 688-772 27-96 (100)
89 1wx8_A Riken cDNA 4931431F19; 73.0 8.8 0.0003 34.0 7.4 74 687-776 15-88 (96)
90 2hj8_A Interferon-induced 17 k 72.8 4.2 0.00014 35.6 5.0 33 594-626 17-49 (88)
91 1j8c_A Ubiquitin-like protein 72.7 13 0.00046 34.9 8.8 74 687-776 30-103 (125)
92 1wju_A NEDD8 ultimate buster-1 72.7 3.7 0.00013 37.2 4.6 32 594-625 32-63 (100)
93 2bwf_A Ubiquitin-like protein 72.2 4.2 0.00014 34.2 4.8 33 594-626 16-48 (77)
94 4dwf_A HLA-B-associated transc 72.0 10 0.00036 33.0 7.5 50 1016-1072 15-64 (90)
95 4dwf_A HLA-B-associated transc 72.0 4.3 0.00015 35.5 5.0 33 594-626 18-50 (90)
96 3dbh_I NEDD8; cell cycle, acti 71.8 3.4 0.00012 35.9 4.2 33 594-626 25-57 (88)
97 2klc_A Ubiquilin-1; ubiquitin- 71.7 11 0.00037 34.0 7.7 73 688-776 24-96 (101)
98 4b6w_A Tubulin-specific chaper 71.4 9.8 0.00034 33.3 7.0 62 710-774 19-81 (86)
99 3v6c_B Ubiquitin; structural g 71.3 4 0.00014 36.0 4.6 33 594-626 30-62 (91)
100 2kan_A Uncharacterized protein 71.2 4.5 0.00015 36.0 4.9 33 594-626 27-59 (94)
101 2dzi_A Ubiquitin-like protein 71.1 4.7 0.00016 34.3 4.9 33 594-626 20-52 (81)
102 1sif_A Ubiquitin; hydrophobic 71.1 5.7 0.0002 34.8 5.5 71 690-775 10-80 (88)
103 2faz_A Ubiquitin-like containi 71.1 4.6 0.00016 34.2 4.8 32 595-626 17-49 (78)
104 1ndd_A NEDD8, protein (ubiquit 71.0 3.8 0.00013 34.3 4.2 33 594-626 13-45 (76)
105 1oey_A P67-PHOX, neutrophil cy 70.8 10 0.00034 33.0 6.7 67 593-670 15-81 (83)
106 4fbj_B NEDD8; effector-HOST ta 70.7 3.5 0.00012 36.2 4.0 33 594-626 13-45 (88)
107 1sif_A Ubiquitin; hydrophobic 70.4 3.6 0.00012 36.1 4.0 33 594-626 22-54 (88)
108 1t0y_A Tubulin folding cofacto 70.4 5.1 0.00017 37.6 5.3 36 593-628 19-54 (122)
109 1yqb_A Ubiquilin 3; structural 70.4 12 0.0004 33.7 7.6 75 686-776 19-93 (100)
110 2kd0_A LRR repeats and ubiquit 70.3 4.9 0.00017 35.0 4.9 32 594-625 24-55 (85)
111 3pge_A SUMO-modified prolifera 70.3 8.6 0.00029 39.3 7.3 76 685-776 25-101 (200)
112 2faz_A Ubiquitin-like containi 70.1 12 0.00041 31.5 7.2 72 690-775 3-75 (78)
113 1ttn_A DC-UBP, dendritic cell- 70.1 9.5 0.00032 34.7 6.9 76 686-776 20-95 (106)
114 2l7r_A Ubiquitin-like protein 69.9 6.3 0.00021 35.0 5.5 71 688-775 18-88 (93)
115 2ojr_A Ubiquitin; lanthide-bin 69.8 13 0.00044 34.1 7.9 74 688-776 34-107 (111)
116 2kk8_A Uncharacterized protein 69.7 5 0.00017 34.9 4.8 50 1016-1071 20-69 (84)
117 1wyw_B Ubiquitin-like protein 69.3 4.9 0.00017 36.0 4.7 33 594-626 34-66 (97)
118 1wy8_A NP95-like ring finger p 68.9 15 0.0005 31.9 7.8 75 688-776 6-81 (89)
119 1v5o_A 1700011N24RIK protein; 68.8 4.4 0.00015 36.7 4.4 34 593-626 23-56 (102)
120 3m62_B UV excision repair prot 68.7 5.2 0.00018 36.5 4.8 71 691-776 3-73 (106)
121 1v5o_A 1700011N24RIK protein; 68.6 16 0.00054 32.9 8.1 75 690-777 8-85 (102)
122 3a4r_A Nfatc2-interacting prot 68.2 5.9 0.0002 34.1 4.8 34 593-626 20-53 (79)
123 4ajy_B Transcription elongatio 68.2 5.8 0.0002 37.0 5.0 32 595-626 15-46 (118)
124 3k9o_B Ubiquitin, UBB+1; E2-25 68.1 4.4 0.00015 35.9 4.2 33 594-626 14-46 (96)
125 2l7r_A Ubiquitin-like protein 68.1 4.2 0.00014 36.1 4.0 33 594-626 30-62 (93)
126 1yqb_A Ubiquilin 3; structural 68.0 5.8 0.0002 35.8 5.0 32 595-626 35-66 (100)
127 3vdz_A Ubiquitin-40S ribosomal 67.7 5.4 0.00019 36.7 4.8 33 594-626 48-80 (111)
128 1yx5_B Ubiquitin; proteasome, 67.6 7.6 0.00026 34.6 5.7 71 692-777 3-73 (98)
129 4hcn_B Polyubiquitin, ubiquiti 67.1 4.5 0.00015 36.3 4.0 33 594-626 35-67 (98)
130 2wyq_A HHR23A, UV excision rep 66.4 14 0.00047 31.7 6.9 73 689-776 5-80 (85)
131 1wy8_A NP95-like ring finger p 66.3 6.9 0.00024 34.1 5.0 33 594-626 21-54 (89)
132 1wm3_A Ubiquitin-like protein 65.9 7.2 0.00024 32.8 4.8 34 593-626 13-46 (72)
133 1wjn_A Tubulin-folding protein 65.8 5 0.00017 35.9 4.0 36 593-628 24-59 (97)
134 3k9o_B Ubiquitin, UBB+1; E2-25 65.7 8.6 0.0003 34.0 5.6 72 690-776 2-73 (96)
135 1v86_A DNA segment, CHR 7, way 64.8 4.4 0.00015 36.2 3.4 31 595-625 30-60 (95)
136 1wx8_A Riken cDNA 4931431F19; 64.8 5.7 0.00019 35.3 4.2 33 594-626 29-61 (96)
137 1t0y_A Tubulin folding cofacto 64.7 26 0.00089 32.6 9.0 81 689-776 6-86 (122)
138 2klc_A Ubiquilin-1; ubiquitin- 64.6 6.9 0.00024 35.3 4.8 33 594-626 37-69 (101)
139 4dbg_A Ranbp-type and C3HC4-ty 63.8 44 0.0015 30.4 9.9 49 1016-1071 36-84 (105)
140 2dzm_A FAS-associated factor 1 63.8 6.3 0.00021 35.7 4.2 32 594-625 21-52 (100)
141 2kdi_A Ubiquitin, vacuolar pro 63.6 9.5 0.00032 35.3 5.6 72 691-777 11-82 (114)
142 1wx7_A Ubiquilin 3; ubiquitin- 63.6 8.5 0.00029 34.9 5.2 32 595-626 30-61 (106)
143 2kd0_A LRR repeats and ubiquit 63.5 11 0.00038 32.7 5.7 57 710-775 26-82 (85)
144 2kdi_A Ubiquitin, vacuolar pro 63.2 8.1 0.00028 35.7 5.1 34 593-626 21-54 (114)
145 1yx5_B Ubiquitin; proteasome, 63.2 6.3 0.00022 35.2 4.2 33 594-626 13-45 (98)
146 2io0_B Small ubiquitin-related 63.1 9.6 0.00033 33.8 5.3 34 593-626 17-50 (91)
147 3vdz_A Ubiquitin-40S ribosomal 62.8 13 0.00046 34.0 6.5 73 688-775 34-106 (111)
148 1qmy_A Protease, leader protea 62.7 2.6 8.8E-05 39.9 1.5 35 195-229 12-47 (167)
149 2c5l_C Phosphoinositide-specif 62.5 37 0.0013 31.5 9.1 71 899-970 5-92 (117)
150 2fnj_B Transcription elongatio 62.3 8.7 0.0003 35.8 5.0 31 595-625 15-45 (118)
151 2kzr_A Ubiquitin thioesterase 62.3 8 0.00027 33.7 4.6 62 712-777 17-78 (86)
152 2io1_B Small ubiquitin-related 61.7 9.3 0.00032 34.1 4.9 34 593-626 19-52 (94)
153 2ojr_A Ubiquitin; lanthide-bin 61.3 9.3 0.00032 35.1 5.1 33 594-626 48-80 (111)
154 1wxv_A BAG-family molecular ch 61.2 9.3 0.00032 33.6 4.9 32 595-626 20-56 (92)
155 4a20_A Ubiquitin-like protein 61.1 20 0.00069 32.1 7.1 75 688-775 18-94 (98)
156 3kyd_D Small ubiquitin-related 61.0 10 0.00035 35.1 5.2 34 594-627 53-86 (115)
157 1wgg_A Ubiquitin carboxyl-term 61.0 7.1 0.00024 34.9 4.1 31 595-625 21-51 (96)
158 1v5t_A 8430435I17RIK protein; 60.7 5.1 0.00017 35.3 3.0 29 597-625 23-51 (90)
159 2pjh_A Protein NPL4, nuclear p 60.4 5.2 0.00018 34.6 2.9 63 706-774 14-78 (80)
160 2kc2_A Talin-1, F1; FERM, adhe 60.2 20 0.0007 33.8 7.2 69 707-775 23-121 (128)
161 2d07_B Ubiquitin-like protein 59.4 12 0.0004 33.3 5.2 33 594-626 30-62 (93)
162 2kvr_A Ubiquitin carboxyl-term 59.2 12 0.00041 35.6 5.5 34 816-850 58-91 (130)
163 1v6e_A Cytoskeleton-associated 59.2 24 0.00081 31.2 7.3 79 689-775 7-86 (95)
164 2eke_C Ubiquitin-like protein 59.1 11 0.00037 34.5 4.9 34 593-626 42-75 (106)
165 1v86_A DNA segment, CHR 7, way 58.9 16 0.00056 32.4 6.1 30 1016-1045 26-55 (95)
166 3m63_B Ubiquitin domain-contai 58.8 4.5 0.00016 36.6 2.4 31 596-626 42-72 (101)
167 1j8c_A Ubiquitin-like protein 58.6 11 0.00037 35.6 5.0 33 594-626 44-76 (125)
168 1wgd_A Homocysteine-responsive 58.4 8.7 0.0003 33.9 4.2 31 596-626 24-56 (93)
169 1ttn_A DC-UBP, dendritic cell- 57.8 8.4 0.00029 35.0 4.1 32 595-626 37-68 (106)
170 2wyq_A HHR23A, UV excision rep 56.8 12 0.00041 32.1 4.8 33 594-626 18-53 (85)
171 1we7_A SF3A1 protein; structur 56.7 11 0.00038 34.8 4.8 33 594-626 48-80 (115)
172 1uel_A HHR23B, UV excision rep 56.4 21 0.00073 31.5 6.5 58 710-776 15-75 (95)
173 2lxa_A Ubiquitin-like protein 56.4 6.5 0.00022 34.6 2.9 27 600-626 22-49 (87)
174 2daf_A FLJ35834 protein; hypot 55.7 13 0.00043 34.6 4.8 62 593-673 28-89 (118)
175 2kan_A Uncharacterized protein 55.7 24 0.00083 31.2 6.7 74 687-776 13-87 (94)
176 2k8h_A Small ubiquitin protein 55.6 12 0.0004 34.5 4.6 34 593-626 38-71 (110)
177 3m63_B Ubiquitin domain-contai 54.6 10 0.00035 34.2 4.0 69 690-774 29-97 (101)
178 1we6_A Splicing factor, putati 54.6 35 0.0012 31.1 7.8 58 710-776 45-103 (111)
179 1we6_A Splicing factor, putati 54.0 12 0.00041 34.3 4.5 33 594-626 43-76 (111)
180 3m62_B UV excision repair prot 53.8 7.1 0.00024 35.6 2.8 32 595-626 15-46 (106)
181 2dzj_A Synaptic glycoprotein S 52.9 26 0.0009 30.6 6.3 73 690-773 11-85 (88)
182 1wxv_A BAG-family molecular ch 52.8 73 0.0025 27.6 9.4 74 688-777 6-85 (92)
183 1wf9_A NPL4 family protein; be 52.3 14 0.0005 33.5 4.7 79 690-776 8-94 (107)
184 1v5t_A 8430435I17RIK protein; 51.5 9.3 0.00032 33.6 3.1 51 1016-1071 16-68 (90)
185 1uel_A HHR23B, UV excision rep 50.7 15 0.00052 32.5 4.5 32 595-626 14-48 (95)
186 1wz0_A Ubiquitin-like protein 49.8 13 0.00046 33.7 4.0 34 593-626 36-69 (104)
187 3q3f_A Ribonuclease/ubiquitin 49.8 20 0.00068 36.4 5.6 72 690-776 106-177 (189)
188 1wf9_A NPL4 family protein; be 49.8 11 0.00037 34.4 3.4 32 595-626 20-52 (107)
189 2dzm_A FAS-associated factor 1 49.2 14 0.00048 33.3 4.0 51 1016-1072 18-68 (100)
190 3uf8_A Ubiquitin-like protein 48.7 30 0.001 35.5 7.0 73 686-774 18-90 (209)
191 1wgg_A Ubiquitin carboxyl-term 48.6 14 0.0005 32.8 4.0 48 1016-1071 16-64 (96)
192 3l0w_B Monoubiquitinated proli 46.7 17 0.00057 36.2 4.5 33 594-626 13-45 (169)
193 2jxx_A Nfatc2-interacting prot 46.5 24 0.00083 31.6 5.0 34 593-626 38-71 (97)
194 2dzj_A Synaptic glycoprotein S 46.4 16 0.00056 32.0 3.9 31 595-625 26-58 (88)
195 4a20_A Ubiquitin-like protein 46.0 15 0.00051 33.0 3.6 30 597-626 37-67 (98)
196 3pge_A SUMO-modified prolifera 45.8 18 0.00063 36.9 4.6 35 593-627 40-74 (200)
197 2l76_A Nfatc2-interacting prot 45.1 16 0.00055 32.6 3.5 34 593-626 32-65 (95)
198 3l0w_B Monoubiquitinated proli 44.4 29 0.00098 34.4 5.8 71 692-777 3-73 (169)
199 1wju_A NEDD8 ultimate buster-1 44.4 27 0.00091 31.5 5.0 58 709-775 33-90 (100)
200 3b1l_X E3 ubiquitin-protein li 50.3 4.7 0.00016 33.9 0.0 32 595-626 14-45 (76)
201 1wxa_A Afadin, AF-6 protein; R 43.9 39 0.0013 31.3 6.2 36 918-953 27-63 (116)
202 2bps_A YUKD protein; ubiquitin 41.9 31 0.0011 29.8 4.8 58 710-772 21-79 (81)
203 2kzr_A Ubiquitin thioesterase 40.4 13 0.00043 32.4 2.2 28 598-625 17-44 (86)
204 1oey_A P67-PHOX, neutrophil cy 39.7 29 0.001 30.1 4.3 34 1019-1055 16-49 (83)
205 1we7_A SF3A1 protein; structur 39.6 31 0.0011 31.6 4.9 58 710-776 50-107 (115)
206 2kdb_A Homocysteine-responsive 39.5 29 0.00098 31.2 4.4 32 595-626 39-72 (99)
207 1wgd_A Homocysteine-responsive 38.7 59 0.002 28.3 6.4 75 689-776 7-85 (93)
208 3b1l_X E3 ubiquitin-protein li 44.7 6.6 0.00023 33.0 0.0 49 1016-1071 10-58 (76)
209 4gdk_A Ubiquitin-like protein 36.6 36 0.0012 30.1 4.5 33 709-741 23-55 (91)
210 3v7o_A Minor nucleoprotein VP3 36.5 7.4 0.00025 39.9 0.0 57 709-774 34-90 (227)
211 2fnj_B Transcription elongatio 36.2 30 0.001 32.2 4.0 49 1017-1072 12-60 (118)
212 3u5e_m 60S ribosomal protein L 34.4 8.4 0.00029 36.4 0.0 32 595-626 14-45 (128)
213 3goe_A DNA repair protein RAD6 34.4 50 0.0017 28.3 4.7 46 594-643 22-68 (82)
214 3u5c_f 40S ribosomal protein S 34.3 8.4 0.00029 37.7 0.0 58 710-776 15-72 (152)
215 1ip9_A BEM1 protein; ubiquitin 34.2 55 0.0019 28.4 5.0 36 813-849 21-56 (85)
216 3tix_A Ubiquitin-like protein 33.9 35 0.0012 34.5 4.4 34 593-626 68-101 (207)
217 1v2y_A 3300001G02RIK protein; 33.4 32 0.0011 31.3 3.7 74 689-777 7-96 (105)
218 2daf_A FLJ35834 protein; hypot 33.2 40 0.0014 31.3 4.3 75 689-777 15-89 (118)
219 4efo_A Serine/threonine-protei 32.7 46 0.0016 29.6 4.5 34 593-626 25-58 (94)
220 1wia_A Hypothetical ubiquitin- 32.0 1.9E+02 0.0066 25.0 8.7 71 688-776 6-77 (95)
221 3q3f_A Ribonuclease/ubiquitin 31.9 41 0.0014 34.0 4.6 50 1016-1072 115-164 (189)
222 1x1m_A Ubiquitin-like protein 31.7 36 0.0012 30.8 3.9 26 601-626 44-72 (107)
223 2kdb_A Homocysteine-responsive 31.3 72 0.0025 28.5 5.7 72 688-772 22-97 (99)
224 3shq_A UBLCP1; phosphatase, hy 30.8 35 0.0012 37.5 4.3 32 595-626 18-49 (320)
225 3rui_B Autophagy-related prote 30.8 53 0.0018 30.5 4.8 32 709-740 50-81 (118)
226 3u5c_f 40S ribosomal protein S 30.7 10 0.00036 37.0 0.0 32 595-626 14-45 (152)
227 1se9_A Ubiquitin family; ubiqu 30.4 1.9E+02 0.0064 27.1 8.5 63 900-969 15-82 (126)
228 1wgh_A Ubiquitin-like 3, HCG-1 30.3 1.9E+02 0.0065 26.6 8.5 60 902-969 17-82 (116)
229 4ajy_B Transcription elongatio 30.1 43 0.0015 31.1 4.0 49 1016-1071 11-59 (118)
230 2gow_A HCG-1 protein, ubiquiti 29.5 1E+02 0.0036 28.8 6.7 61 901-969 17-83 (125)
231 3u5e_m 60S ribosomal protein L 29.5 11 0.00039 35.4 0.0 58 710-776 15-72 (128)
232 3uf8_A Ubiquitin-like protein 29.2 55 0.0019 33.5 5.2 46 594-639 33-78 (209)
233 3ai5_A Yeast enhanced green fl 28.9 92 0.0032 33.9 7.1 72 688-774 232-303 (307)
234 2lxa_A Ubiquitin-like protein 28.2 29 0.00098 30.4 2.4 51 1016-1073 11-64 (87)
235 2pjh_A Protein NPL4, nuclear p 28.0 36 0.0012 29.2 3.0 29 1019-1047 16-44 (80)
236 3m95_A Autophagy related prote 27.8 57 0.002 30.6 4.5 33 709-741 56-88 (125)
237 3ai5_A Yeast enhanced green fl 27.2 49 0.0017 36.1 4.6 33 594-626 246-278 (307)
238 1q1o_A Cell division control p 26.6 61 0.0021 29.0 4.2 32 1016-1047 20-54 (98)
239 3h9d_A ATG8, microtubule-assoc 26.3 61 0.0021 30.1 4.4 33 709-741 51-83 (119)
240 1x1m_A Ubiquitin-like protein 26.0 52 0.0018 29.7 3.8 53 715-776 44-99 (107)
241 1wia_A Hypothetical ubiquitin- 25.8 43 0.0015 29.4 3.2 46 1016-1071 17-63 (95)
242 2r2q_A Gamma-aminobutyric acid 25.1 70 0.0024 29.2 4.5 32 709-740 47-78 (110)
243 2xzm_9 RPS31E; ribosome, trans 24.8 15 0.00053 37.1 0.0 32 595-626 14-45 (189)
244 3shq_A UBLCP1; phosphatase, hy 24.7 70 0.0024 35.1 5.3 52 1016-1071 14-65 (320)
245 1ip9_A BEM1 protein; ubiquitin 24.6 69 0.0023 27.8 4.0 28 1016-1043 21-48 (85)
246 1q1o_A Cell division control p 24.4 92 0.0032 27.9 4.9 27 813-839 22-48 (98)
247 3ivf_A Talin-1; FERM domain, c 24.2 6E+02 0.02 27.9 13.2 111 709-849 16-131 (371)
248 1v2y_A 3300001G02RIK protein; 24.2 30 0.001 31.5 1.8 30 1016-1045 17-46 (105)
249 2zjd_A Microtubule-associated 23.6 81 0.0028 29.8 4.7 32 709-740 56-88 (130)
250 1eo6_A GATE-16, golgi-associat 23.2 74 0.0025 29.4 4.3 32 709-740 48-79 (117)
251 2daj_A KIAA0977 protein, COBL- 21.5 1.2E+02 0.0042 26.3 4.8 52 709-766 24-75 (91)
252 1pqs_A Cell division control p 21.1 95 0.0033 26.5 4.2 25 1019-1043 4-28 (77)
253 2eki_A DRG 1, developmentally- 20.6 82 0.0028 27.9 3.8 48 1015-1069 25-82 (93)
254 3qx1_A FAS-associated factor 1 20.1 1.3E+02 0.0046 25.6 5.1 60 597-671 23-82 (84)
No 1
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-103 Score=942.21 Aligned_cols=497 Identities=29% Similarity=0.488 Sum_probs=447.1
Q ss_pred HHhhccceeeeecCChhHHhhccccceecccCCCC--ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCcc
Q 001393 558 KAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDK--VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTY 635 (1087)
Q Consensus 558 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~ 635 (1087)
++|+|+|++++|+|+++|++|+| |||+|++. ++++||+|++|+.+|++.||+.+|++++++|||.|.+|||+|.
T Consensus 4 ~~EahlY~~vkv~tde~f~~~~G----fDL~d~~~~~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~ 79 (530)
T 2ylm_A 4 GSEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTK 79 (530)
T ss_dssp CTTGGGEEEEEEEEGGGGTTCCS----SSSCCTTTCCCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCE
T ss_pred hhhhhceeEEEEeeHHHHhhccC----CCCcCCccCCcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCcc
Confidence 57999999999999999999999 99998764 4589999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhhhHHHHHhhhccccccceeEEEEeecCC-CCC-CCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEc
Q 001393 636 RPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGP-DLH-PIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLK 713 (1087)
Q Consensus 636 rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~-~~~-~~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~ 713 (1087)
||+....+.+...++.++.. ...+++||||+.... ... ...++....+++|||||||||.+|+|+|+||++|+
T Consensus 80 Rp~~~~~~~~~~~~~~~~~~-----~~~~~~lflE~~~~~~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~ 154 (530)
T 2ylm_A 80 RPAMLDNEADGNKTMIELSD-----NENPWTIFLETVDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTP 154 (530)
T ss_dssp EECCCCHHHHTTSBHHHHHT-----SCSSEEEEEEECCHHHHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CCccCCccccHHHHHHHHhc-----cCCceEEEEEecccccCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEEC
Confidence 99942111223335655442 235899999996421 111 01245567788999999999999999999999999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccC-cCCccccc--cCCCCCEEEEEeCCCCCCccCCCCCCH
Q 001393 714 SSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLD-KRTSFRLS--QIEDGDIICFQKSPPLESEQECRYPDV 790 (1087)
Q Consensus 714 ~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~-~~~t~~~~--el~~GDIi~fQ~~~~~~~~~~~~y~~v 790 (1087)
++++|++|+|.|+++||||+||+|.||||++ |+ +|++|+ ++.||.++ ||++|||||||+..++ ..+..||||
T Consensus 155 ~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~--~~-~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~--~~~~~y~~v 229 (530)
T 2ylm_A 155 ISCKIRDLLPVMCDRAGFIQDTSLILYEEVK--PN-LTERIQDYDVSLDKALDELMDGDIIVFQKDDPE--NDNSELPTA 229 (530)
T ss_dssp TTCBGGGTHHHHHHHHTCCTTCCEEEEEEEE--TT-EEEECCCSSSBHHHHSTTCCTTEEEEEEECCGG--GGGSSSCSH
T ss_pred CCCCHHHHHHHHHHHcCCCCCCceEEEEecC--CC-ceeEcccccccHHHHHhcccCCCEEEEEecCCc--cccccCCCH
Confidence 9999999999999999999999999999998 76 679999 89999999 9999999999998643 346689999
Q ss_pred HHHHHHhhceeEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCCCccccCcchH
Q 001393 791 PSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHL 870 (1087)
Q Consensus 791 ~~yy~~L~nr~~v~f~~~~~~~~~~f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l 870 (1087)
.+||+||+||+.|+|++...+++++|+||||++|+|+|||++||++||+ ||.+||||++++|++.|+. +++++.+++|
T Consensus 230 ~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~-dP~~lRf~~~~~~~~~p~~-~i~~~~~~~L 307 (530)
T 2ylm_A 230 KEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNT-DPMLLQFFKSQGYRDGPGN-PLRHNYEGTL 307 (530)
T ss_dssp HHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTS-CGGGEEEECCCTTSCSCCS-BCCTTCCSCH
T ss_pred HHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCC-CchhEEEEecccccCCCCC-ccccCCCCcH
Confidence 9999999999999999987777889999999999999999999999997 6999999999999999985 8888888999
Q ss_pred HHhhcccC-CccceEEEEEecCChhhhccCceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCC-CCccEE
Q 001393 871 SDMLVHYN-QTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSH-PNAELR 948 (1087)
Q Consensus 871 ~~~l~~~~-~~~~~l~YevL~~pl~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~-~~~~lr 948 (1087)
+|||.... .+.++||||+|+||++|||++|++||+|++++++++ +++|+|||+|||+||+++|++++++++ ++++||
T Consensus 308 ~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~-~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lR 386 (530)
T 2ylm_A 308 RDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREE-EITLYPDKHGCVRDLLEECKKAVELGEKASGKLR 386 (530)
T ss_dssp HHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEE-EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEE
T ss_pred HHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceE-EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEE
Confidence 99997633 345899999999999999999999999999988865 999999999999999999999999986 578999
Q ss_pred EEEEeccEEEEecCCcccccccccc-cceEEEEecccccccC-CCCCeEEEEEeeeccCcccccccccCCccEEEEecCC
Q 001393 949 LLEVFYHKIYKIFAPNEKIENINDQ-YWTLRAEEIPEEEKNL-GPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEG 1026 (1087)
Q Consensus 949 l~~v~~~k~~~~~~~~~~i~~i~~~-~~~~~~e~iP~~e~~~-~~~~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~ 1026 (1087)
+|+|++|||+++++.+++|.+|+++ +.++||||||++|.++ .+++++|+|+||+|++++.| |+||+|+|++|
T Consensus 387 l~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~------G~PF~~~v~~g 460 (530)
T 2ylm_A 387 LLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTF------GIPFLLRIHQG 460 (530)
T ss_dssp EEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEE------EEEEEEEEETT
T ss_pred EEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCccccc------CCCeEEEecCC
Confidence 9999999999999999999999873 6799999999999999 99999999999999998665 99999999999
Q ss_pred CCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhhccccc
Q 001393 1027 ETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQVCF 1077 (1087)
Q Consensus 1027 E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~~~~~~ 1077 (1087)
|||++||+||++||||++|||+|||||||++++++|++|++++++++.++.
T Consensus 461 Et~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~~~~l~~~~~ 511 (530)
T 2ylm_A 461 EHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEP 511 (530)
T ss_dssp CCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTCCCCGGGTSC
T ss_pred CcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccceehhhhhhc
Confidence 999999999999999999999999999999999999999999999987765
No 2
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-93 Score=859.42 Aligned_cols=493 Identities=47% Similarity=0.796 Sum_probs=437.4
Q ss_pred CCCCCcEEEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCC----CCCceEEEEeecCCCCCCCCceEEEEEEEEEE
Q 001393 48 EDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGN----NVDHLSMYLDVADSGTLPYGWSRYAQFSLAVV 123 (1087)
Q Consensus 48 ~~~~~~~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~----~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~ 123 (1087)
+....++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+ +.+|||+||++.+. ..+.+|+++|+|.|+|+
T Consensus 26 ~~~~~~~~~w~I~nfS~~~-~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~ 103 (522)
T 2f1z_A 26 SWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKII 103 (522)
T ss_dssp CCCSEEEEEEEESSCTTCC-SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEEC
T ss_pred cccCCcEEEEEECChhhcC-CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEE
Confidence 3568899999999999996 589999999999999999999996 34899999999877 44678999999999999
Q ss_pred eecccceeEEecceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeeccccccCCCCCcccccccccCC
Q 001393 124 NQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQG 203 (1087)
Q Consensus 124 n~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~~~~~~~~s~~~~g~~GL~N~G 203 (1087)
|+.++..+..+...|+|...+.+|||++||++++|.++.+|||.||+++|+|+|+|.. +....|++++.+|++||.|+|
T Consensus 104 n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~-p~g~~~~~~~~~g~~GL~NlG 182 (522)
T 2f1z_A 104 NYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA-PHGVAWDSKKHTGYVGLKNQG 182 (522)
T ss_dssp CTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECC-CBSSCCCTTTTTSCCCBCCC-
T ss_pred cCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccc-cccccCCccccCCccceecCc
Confidence 9998877777778899988888999999999999988889999999999999999954 566789999999999999999
Q ss_pred ccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCCccCccccccHHHH
Q 001393 204 ATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQEL 283 (1087)
Q Consensus 204 nTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~~~~~~~QqDa~Ef 283 (1087)
|||||||+||+|+++|+||++++.++.. ......+++++|++||..|+.+..++.+..|+++++|..+..++|||||||
T Consensus 183 nTCYmNSvLQ~L~~~~~fr~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~~~~~~~QqDa~Ef 261 (522)
T 2f1z_A 183 ATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQEL 261 (522)
T ss_dssp -CTTHHHHHHHHHTCHHHHHHHHTCCCC-SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTCCCTTTSSTTSCHHHH
T ss_pred ccHHHHHHHHHHhccHHHHHHHhhcccc-CCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcCCccCCCcccccHHHH
Confidence 9999999999999999999999987653 334457899999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHHHHHhhccceEEecCCCcc
Q 001393 284 NRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKY 363 (1087)
Q Consensus 284 l~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~e~L~~~~~~E~l~g~n~y 363 (1087)
++.||+.|+++++++...+.|.++|+|++.+.++|..|++.+.+.|+|++|+|+|++..+|.+||+.|+.+|.++|+|+|
T Consensus 262 l~~LLd~L~~~l~~~~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~ 341 (522)
T 2f1z_A 262 CRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKY 341 (522)
T ss_dssp HHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCB
T ss_pred HHHHHHHHHhhccCCccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCccee
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCcCCCCCccEEEEEEE
Q 001393 364 HAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVL 443 (1087)
Q Consensus 364 ~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVV 443 (1087)
.|++|++++|.|+..|.++|+||+|||+||.|+..++...|+++.|+||..||| ++|+.... ...+..|+|+|||
T Consensus 342 ~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl----~~~~~~~~-~~~~~~Y~L~avv 416 (522)
T 2f1z_A 342 DAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD-PKDPANYILHAVL 416 (522)
T ss_dssp CCGGGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEEC----GGGBSSCC-TTSCCEEEEEEEE
T ss_pred ecCcCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecc----hhhhcccc-CCCCcEEEEEEEE
Confidence 999999999999999999999999999999999888889999999999999999 78876542 2346789999999
Q ss_pred EEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeecc
Q 001393 444 VHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (1087)
Q Consensus 444 vH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (1087)
+|.|+.++|||+||+|+..+++||+|||+.|+++++++|++.+|||.+... ....+.+||||||+|++.
T Consensus 417 ~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~-----------~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 417 VHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp EEECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC-------------------CEEEEEEEEEETTS
T ss_pred EecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCcccc-----------ccCcCCceEEEEEEECCc
Confidence 999999999999999986689999999999999999999999999864210 012346899999999999
Q ss_pred ccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001393 524 KDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQ 560 (1087)
Q Consensus 524 ~~~~l~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e 560 (1087)
.++++.++.+.+||++|.+++++|+++.++++||++|
T Consensus 486 ~~~~~~~~~~~~ip~~~~~~~~~e~~~~~~~~~~~~~ 522 (522)
T 2f1z_A 486 LSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522 (522)
T ss_dssp HHHHTCCCCTTTSCSHHHHHHHHTTTCC---------
T ss_pred hHHhhcccCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998876
No 3
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2.2e-68 Score=614.73 Aligned_cols=353 Identities=54% Similarity=0.912 Sum_probs=310.3
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcCCC
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWD 270 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~~~ 270 (1087)
|+.+|++||.|+||||||||+||+|+++|+||++++..+.. ......+++++|++||..|+.+..++++..++++++|.
T Consensus 1 k~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~ 79 (353)
T 1nb8_A 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWE 79 (353)
T ss_dssp CCCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT-TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTCC
T ss_pred CCCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC-CCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCCC
Confidence 57899999999999999999999999999999999887642 33345789999999999999988899999999999999
Q ss_pred ccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHHHHHhh
Q 001393 271 TYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDK 350 (1087)
Q Consensus 271 ~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~e~L~~ 350 (1087)
.+..+.|||||||++.|||.|++++++....+.|.++|+|++.+.++|..|++.|.+.|+|++|+|+|++..++.+||+.
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~ 159 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVD 159 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTTSTTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTTCSBHHHHHHH
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcCCCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECCCcchHHHHHH
Confidence 99999999999999999999999999887788999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCCCCCCcC
Q 001393 351 YVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD 430 (1087)
Q Consensus 351 ~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~ 430 (1087)
|+.+|.++|+|+|.|++|+++.|.|+..|.++|+||+|||+||.|+..++...|+++.|.||..||| ++|+....
T Consensus 160 ~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl----~~~~~~~~- 234 (353)
T 1nb8_A 160 YVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD- 234 (353)
T ss_dssp HTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC----GGGBSSCC-
T ss_pred hhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh----hhhhcccC-
Confidence 9999999999999999999999999999999999999999999999877788999999999999999 78876542
Q ss_pred CCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccC
Q 001393 431 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKY 510 (1087)
Q Consensus 431 ~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~ 510 (1087)
...+..|+|+|||+|.|+.++|||+||+|+..+++||+|||+.|+++++++|++.+|||.+... ....+
T Consensus 235 ~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~-----------~~~~~ 303 (353)
T 1nb8_A 235 PKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHC 303 (353)
T ss_dssp TTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC------------------CC
T ss_pred CCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCcccc-----------ccCcC
Confidence 2346789999999999999999999999976689999999999999999999999999864210 01224
Q ss_pred CceEEEEEEeeccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001393 511 SNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQ 560 (1087)
Q Consensus 511 ~~AYmL~Y~R~~~~~~~l~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e 560 (1087)
.+||||||+|.+..++++.++.+.+||+++.+++++|++..++++||++|
T Consensus 304 ~~aYiLfY~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 353 (353)
T 1nb8_A 304 TNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353 (353)
T ss_dssp EEEEEEEEEETTTHHHHTCCCCGGGSCHHHHHHHHHHHHHHHCC------
T ss_pred CeEEEEEEEECchhhhhhcccCccccCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999999999999999999999988875
No 4
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=9.9e-57 Score=520.68 Aligned_cols=299 Identities=25% Similarity=0.391 Sum_probs=259.5
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCC------CCCCCCCHHHHHHHHHHHHhcC-CCcccchhh
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE------NDLPSGSIPLALQSLFYKLQYN-DTSVATKEL 263 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~------~~~~~~~~~~~Lq~Lf~~l~~s-~~~v~~~~l 263 (1087)
+..+|++||.|+||||||||+||+|+++|+||++++...... ......++..+|+.||..|+.+ ..+++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 456899999999999999999999999999999998644211 1112346899999999999986 468999999
Q ss_pred hhhcCC--CccCccccccHHHHHHHHHHHHHHHhcCCC-----------------------------cccccccccceEE
Q 001393 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGHH 312 (1087)
Q Consensus 264 ~~~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~~ 312 (1087)
...+++ +.|.++.|||||||++.|||.|+++++... ..+.|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 998864 568899999999999999999999985421 1356889999999
Q ss_pred eeeEEeeceeeeceeeeeeeeeeeecCCC-------------------CCHHHHHhhccceEEecCCCcccccccC-eee
Q 001393 313 MNYIECINVDYKSTRKESFYDLQLDVKGC-------------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQD 372 (1087)
Q Consensus 313 ~~~i~C~~c~~~s~~~e~f~~L~L~v~~~-------------------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~ 372 (1087)
.+.++|..|++.|.+.|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|.|++|+ +++
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~ 242 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQ 242 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEEC
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCce
Confidence 99999999999999999999999999743 4799999999999999999999999997 678
Q ss_pred ceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCc-cccCCccCCCCCCCCcCCCCCccEEEEEEEEEecccCC
Q 001393 373 AKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHG 451 (1087)
Q Consensus 373 a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~ 451 (1087)
|.|+..|.++|+||+||||||.|+. ....|+++.|.||. .||| ++|+.... ..+..|+|+|||+|.|+.++
T Consensus 243 a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl----~~~~~~~~--~~~~~Y~L~avv~H~G~~~~ 314 (367)
T 2y6e_A 243 ATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNM----SEFVCNLS--ARPYVYDLIAVSNHYGAMGV 314 (367)
T ss_dssp CEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEEC----GGGBSCSS--SCCCEEEEEEEEEEECSSSS
T ss_pred EEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCCh----hhhccCCC--CCCceEEEEEEeecCCCCCC
Confidence 9999999999999999999999973 45789999999997 6999 78877543 24578999999999999999
Q ss_pred ceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeecc
Q 001393 452 GHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (1087)
Q Consensus 452 GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (1087)
|||+||+|...+++||+|||+.|+++++++|+. .+||||||+|++.
T Consensus 315 GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 315 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVT--------------------------KAAYVLFYQRRDD 360 (367)
T ss_dssp CEEEEEEECTTTCCEEEEETTEEEECCGGGTSS--------------------------TTEEEEEEEECCC
T ss_pred CeeeEEEEcCCCCeEEEECCCCceECCHHHcCC--------------------------CCcEEEEEEEcCC
Confidence 999999999778999999999999999888842 4899999999874
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=3.4e-56 Score=511.70 Aligned_cols=301 Identities=27% Similarity=0.427 Sum_probs=259.4
Q ss_pred CCCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCC----CCCCCCCCHHHHHHHHHHHHhc--CCCcccchh
Q 001393 189 DSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT----ENDLPSGSIPLALQSLFYKLQY--NDTSVATKE 262 (1087)
Q Consensus 189 ~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~----~~~~~~~~~~~~Lq~Lf~~l~~--s~~~v~~~~ 262 (1087)
++++.+|++||.|+||||||||+||+|+++|+||+++++.... .......++.++|+.||..|+. ....++|..
T Consensus 2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 5788999999999999999999999999999999999764221 1122345789999999999984 457899999
Q ss_pred hhhhcC--CCccCccccccHHHHHHHHHHHHHHHhcCCC-----------------------------cccccccccceE
Q 001393 263 LTKSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGH 311 (1087)
Q Consensus 263 l~~~~~--~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~ 311 (1087)
|.+.++ .+.+.++.|||||||++.|||.|+++++... ..+.|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 998886 3568889999999999999999999986432 134588999999
Q ss_pred EeeeEEeeceeeeceeeeeeeeeeeecCCCC----CHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeE
Q 001393 312 HMNYIECINVDYKSTRKESFYDLQLDVKGCR----DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVL 386 (1087)
Q Consensus 312 ~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~----sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL 386 (1087)
+.+.++|..|++.+.+.|+|++|+|+++... +|++||+.|+.+|.++|+|+|.|++|+ ++.|.|+..|.++|++|
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL 241 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKIL 241 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEE
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceE
Confidence 9999999999999999999999999998743 899999999999999999999999997 67899999999999999
Q ss_pred EEEEeeEEeeccccceeecCceEecC-ccccCCccCCCCCCCCcCCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCC
Q 001393 387 QLQLKRFEYDFMRDAMVKINDRYEFP-LQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQ 465 (1087)
Q Consensus 387 ~i~LkRf~~d~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~ 465 (1087)
+|||+||.++ +....|+++.|+|| ..||| ++|+..+. ....|+|+|||+|.|+.++|||+||+|...+++
T Consensus 242 ~i~lkRf~~~--~~~~~K~~~~v~fp~~~ldl----~~~~~~~~---~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~ 312 (348)
T 3nhe_A 242 VLHLKRFSES--RIRTSKLTTFVNFPLRDLDL----REFASENT---NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE 312 (348)
T ss_dssp EEEECCBCCC--SSCCCBCCCCEECCSSCEEC----GGGBCTTC---CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCC
T ss_pred EEEEEccccc--CCceeecCcceeccCCcCCH----hhhcCCCC---CCCcEEEEEEEEccCCCCCcccEEEEccCCCCc
Confidence 9999999875 45678999999999 57999 78876543 356899999999999999999999999977899
Q ss_pred eEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeeccc
Q 001393 466 WYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDK 524 (1087)
Q Consensus 466 W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~ 524 (1087)
||+|||+.|+++++++|. ..+||||||+|.+..
T Consensus 313 W~~~nD~~V~~v~~~~v~--------------------------~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 313 WHTFNDSSVTPMSSSQVR--------------------------TSDAYLLFYELASPP 345 (348)
T ss_dssp EEEEETTEEEEECGGGTC--------------------------CTTEEEEEEEECC--
T ss_pred EEEEeCCCceECCHHHcC--------------------------CCCceEEEEEecCCC
Confidence 999999999999998883 248999999998754
No 6
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3.3e-55 Score=512.35 Aligned_cols=298 Identities=29% Similarity=0.472 Sum_probs=258.5
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCC------CCCCCCCCCHHHHHHHHHHHHhcCC-Ccccchhh
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT------TENDLPSGSIPLALQSLFYKLQYND-TSVATKEL 263 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~------~~~~~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l 263 (1087)
...+|++||.|+||||||||+||+|+++|+||++++.... ........+++.+++.++..|+.+. ..++|..|
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f 136 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDF 136 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHH
T ss_pred CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHH
Confidence 3478999999999999999999999999999999976321 1111123568889999999999864 57899999
Q ss_pred hhhcCC--CccCccccccHHHHHHHHHHHHHHHhcCCC-----------------------------cccccccccceEE
Q 001393 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGHH 312 (1087)
Q Consensus 264 ~~~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~~ 312 (1087)
...+++ +.|..+.|||||||+++|||.|++++.... ..+.|.++|+|++
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l 216 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQF 216 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEE
Confidence 988863 578899999999999999999999986532 2356889999999
Q ss_pred eeeEEeeceeeeceeeeeeeeeeeecCCC--CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEE
Q 001393 313 MNYIECINVDYKSTRKESFYDLQLDVKGC--RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQ 389 (1087)
Q Consensus 313 ~~~i~C~~c~~~s~~~e~f~~L~L~v~~~--~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~ 389 (1087)
.+.++|..|++.+.+.|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|.|++|+ +++|.|+..|.++|+||+||
T Consensus 217 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiih 296 (396)
T 2gfo_A 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVH 296 (396)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEE
T ss_pred EEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEE
Confidence 99999999999999999999999999864 5899999999999999999999999997 57899999999999999999
Q ss_pred EeeEEeeccccceeecCceEecCc-cccCCccCCCCCCCCcCCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEE
Q 001393 390 LKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYK 468 (1087)
Q Consensus 390 LkRf~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~ 468 (1087)
|+||.|+. ....|+++.|.||. .||| ++|+..+. .....|+|+|||+|.|++++|||+||+|...+++||+
T Consensus 297 LkRF~~~~--~~~~K~~~~v~fp~~~Ldl----~~~~~~~~--~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 368 (396)
T 2gfo_A 297 LKRFSYDG--RWKQKLQTSVDFPLENLDL----SQYVIGPK--NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 368 (396)
T ss_dssp ECCEEECS--SSEEECCCEEECCSSCBCC----GGGBCSCC--SSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEE
T ss_pred ecceeccC--ccceecCceEecchhhccc----cccccCCC--CCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEE
Confidence 99999974 34689999999995 6999 78876543 2357899999999999999999999999977799999
Q ss_pred eeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeec
Q 001393 469 FDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 469 fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
|||+.|+++++++|+ +.+||||||+|.+
T Consensus 369 fnD~~V~~v~~~~v~--------------------------~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 369 FDDHEVSDISVSSVK--------------------------SSAAYILFYTSLG 396 (396)
T ss_dssp EETTEEEECCHHHHS--------------------------CTTEEEEEEECC-
T ss_pred EeCCCeEECCHHHcC--------------------------CCCceEEEEEEcC
Confidence 999999999998884 1489999999864
No 7
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.4e-55 Score=506.01 Aligned_cols=293 Identities=27% Similarity=0.444 Sum_probs=250.9
Q ss_pred ccccccccCCccccchhHHHHHhcChhHHHHHccCCCC---CCCCCCCCHHHHHHHHHHHHhcCC--CcccchhhhhhcC
Q 001393 194 TGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT---ENDLPSGSIPLALQSLFYKLQYND--TSVATKELTKSFG 268 (1087)
Q Consensus 194 ~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~~~~~Lq~Lf~~l~~s~--~~v~~~~l~~~~~ 268 (1087)
||++||.|+||||||||+||+|+++|+||++++..... .......++..+|+.||..|+.+. .+++|..|.+.++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 69999999999999999999999999999999864321 111223578999999999999853 6899999999886
Q ss_pred --CCccCccccccHHHHHHHHHHHHHHHhcCCC--------------------------------------------ccc
Q 001393 269 --WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------------------------------------------VEG 302 (1087)
Q Consensus 269 --~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~--------------------------------------------~~~ 302 (1087)
++.+..+.|||||||++.|||.|+++++... ..+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 5678899999999999999999999986432 124
Q ss_pred ccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCC------CCHHHHHhhccceEEecCCCcccccccC-eeecee
Q 001393 303 TIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKK 375 (1087)
Q Consensus 303 ~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k 375 (1087)
.|.++|+|++.+.++|..|++.+.+.++|++|+|+++.. .+|++||+.|+++|.++|+|+|.|++|+ ++.|.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEE
Confidence 588999999999999999999999999999999999763 4999999999999999999999999997 678999
Q ss_pred eeEeccCCCeEEEEEeeEEeeccccceeecCceEecCc-cccCCccCCCCCCCCcCCCCCccEEEEEEEEEecccCCceE
Q 001393 376 GVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHY 454 (1087)
Q Consensus 376 ~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY 454 (1087)
+..|.++|+||+|||+||.++ .+...|++..|.||. .||| ++|+... .....|+|+|||+|.|+.++|||
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~--~~~~~K~~~~v~fp~~~l~l----~~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY 311 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSAS--RGSIKKSSVGVDFPLQRLSL----GDFASDK---AGSPVYQLYALCNHSGSVHYGHY 311 (355)
T ss_dssp EEEEEECCSEEEEEECCEECC--SSCCEECCCCCBCCSSCEEC----GGGBC-------CCEEEEEEEEEEEEETTEEEE
T ss_pred EEEcccCChheEEEhhheecC--CCCceECCcceeCCccccCc----hhhccCC---CCCcceEEEEEEEecCCCCCCeE
Confidence 999999999999999999885 467889999999995 5999 7887653 24578999999999999999999
Q ss_pred EEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeecc
Q 001393 455 YAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (1087)
Q Consensus 455 ~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (1087)
+||+|. +++||+|||+.|+++++++|+. .+||||||+|.+.
T Consensus 312 ~~~~~~--~~~W~~~nD~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 312 TALCRC--QTGWHVYNDSRVSPVSENQVAS--------------------------SEGYVLFYQLMQE 352 (355)
T ss_dssp EEEEEE--TTEEEEEETTEEEEECHHHHHT--------------------------SCCSEEEEEEC--
T ss_pred EEEEEc--CCeEEEEcCCCcEECCHHHcCC--------------------------CCcEEEEEEeccC
Confidence 999998 5779999999999999999963 3899999999864
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.2e-54 Score=509.78 Aligned_cols=302 Identities=23% Similarity=0.378 Sum_probs=255.6
Q ss_pred cccccccccCCccccchhHHHHHhcChhHHHHHccCCCC--CC--CCCCCCHHHHHHHHHHHHhcCCCcccchhhhhhcC
Q 001393 193 ETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT--EN--DLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG 268 (1087)
Q Consensus 193 ~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~--~~--~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~~~ 268 (1087)
..+++||.|+||||||||+||+|+++|+||++++..... .+ .....+++++|++||..|+.+..+++|..|++.++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 456799999999999999999999999999999876542 11 11235799999999999999888999999988764
Q ss_pred C--CccC------ccccccHHHHHHHHHHHHHHHhcCCC-------------------cccccccccceEEeeeEEeece
Q 001393 269 W--DTYD------SFMQHDVQELNRVLCEKLEDKMKGTV-------------------VEGTIQQLFEGHHMNYIECINV 321 (1087)
Q Consensus 269 ~--~~~~------~~~QqDa~Efl~~Lld~Le~~~~~~~-------------------~~~~i~~lF~g~~~~~i~C~~c 321 (1087)
. +.|. .+.|||||||++.||+.|+++++... ..+.|.++|+|++.+.++|..|
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C 170 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCC
Confidence 2 2333 58999999999999999999987543 3467899999999999999999
Q ss_pred eeec--eeeeeeeeeeeecCCC-CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeec
Q 001393 322 DYKS--TRKESFYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 397 (1087)
Q Consensus 322 ~~~s--~~~e~f~~L~L~v~~~-~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~ 397 (1087)
++.+ .+.|+|++|+|+|++. .+|++||+.++. |.++ |.|+.|+ .+.+.|+..|.++|+||+|||+||.|+.
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKE 245 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCC
T ss_pred CCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEec
Confidence 9995 7999999999999875 589999999997 4443 7899997 4678999999999999999999999998
Q ss_pred cccceeecCceEecCccccCCccCCCCCCCCc-----------------------------------------------C
Q 001393 398 MRDAMVKINDRYEFPLQLDLDRENGKYLSPDA-----------------------------------------------D 430 (1087)
Q Consensus 398 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~-----------------------------------------------~ 430 (1087)
.++...|+++.|.||..||| .+|+..+. .
T Consensus 246 ~~~~~~Ki~~~v~fP~~Ldl----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 321 (404)
T 2ayn_A 246 KESVNAKVLKDVKFPLMLDM----YELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIG 321 (404)
T ss_dssp SSSSCCBCCCCCBCCSEEEC----GGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTT
T ss_pred ccCceeccCceeccCceeEH----hHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccC
Confidence 77888999999999999999 56654310 0
Q ss_pred CCCCccEEEEEEEEEec-ccCCceEEEEEeeCCCCCeEEeeCceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCccccc
Q 001393 431 RSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTK 509 (1087)
Q Consensus 431 ~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~ 509 (1087)
......|+|+|||+|.| ++++|||+||||.. +++||+|||+.|+++++++|+...+||.
T Consensus 322 ~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~v~~~~~g~~------------------- 381 (404)
T 2ayn_A 322 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGD------------------- 381 (404)
T ss_dssp TCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSS-------------------
T ss_pred cCCCceEEEEEEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHHHHhhhCCCC-------------------
Confidence 12357899999999999 69999999999984 7899999999999999999988776653
Q ss_pred CCceEEEEEEeecc
Q 001393 510 YSNAYMLVYIRESD 523 (1087)
Q Consensus 510 ~~~AYmL~Y~R~~~ 523 (1087)
+.+||||||+|++.
T Consensus 382 ~~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 382 WHIAYVLLYGPRRV 395 (404)
T ss_dssp SCEEEEEEEECC--
T ss_pred CceEEEEEEEecCC
Confidence 35899999999874
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=7.2e-54 Score=504.85 Aligned_cols=299 Identities=24% Similarity=0.353 Sum_probs=248.9
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCC--------CCCHHHHHHHHHHHHhcCC-Ccccch
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLP--------SGSIPLALQSLFYKLQYND-TSVATK 261 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~--------~~~~~~~Lq~Lf~~l~~s~-~~v~~~ 261 (1087)
....+++||.|+||||||||+||+|+++|+||++++.......... ..+++++|++||..|+.+. .+++|.
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 4456789999999999999999999999999999987654322211 2379999999999999976 889999
Q ss_pred hhhhhcCC--CccC-------ccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeec--eeeee
Q 001393 262 ELTKSFGW--DTYD-------SFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKS--TRKES 330 (1087)
Q Consensus 262 ~l~~~~~~--~~~~-------~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s--~~~e~ 330 (1087)
.|+..++. +.|. .+.||||+||++.||+.|++++++ +.|.++|+ ++.+.++|..|++.+ .+.|+
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~----~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~ 173 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD----KFSEDFRI-QFKTTIKDTANDNDITVKENES 173 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----HHHTTTCE-EEEEEEEETTEEEEEEEECCCE
T ss_pred HHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----chHHHHHH-hheEEEEECCCCCCcccccccc
Confidence 99887642 3344 789999999999999999999864 67999999 999999999999987 58999
Q ss_pred eeeeeeecCCC-CCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCce
Q 001393 331 FYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDR 408 (1087)
Q Consensus 331 f~~L~L~v~~~-~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~ 408 (1087)
|++|+|+|++. .+|++||+.++.. .++ |.|+.|+ .+.+.|+..|.++|+||+|||+||.|+..++...|+++.
T Consensus 174 f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~ 248 (415)
T 1vjv_A 174 DSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRK 248 (415)
T ss_dssp ESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCC
T ss_pred ceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCc
Confidence 99999999875 5899999999974 343 7899997 567999999999999999999999999888889999999
Q ss_pred EecCccccCCccCCCCCCCC------------------------------------------------------------
Q 001393 409 YEFPLQLDLDRENGKYLSPD------------------------------------------------------------ 428 (1087)
Q Consensus 409 v~fP~~Ldl~~~~~~~l~~~------------------------------------------------------------ 428 (1087)
|+||..||| .+|+..+
T Consensus 249 V~FP~~Ldl----~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 324 (415)
T 1vjv_A 249 VVFPFQLDV----ADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQW 324 (415)
T ss_dssp CBCCSEEEC----GGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEeEh----HHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhh
Confidence 999999999 6665431
Q ss_pred -------------cCCCCCccEEEEEEEEEec-ccCCceEEEEEee-CCCCCeEEeeCceeEEecHHhHHHHhcCCCCCC
Q 001393 429 -------------ADRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRP-TLSDQWYKFDDERVTKEDVKRALEEQYGGEEEL 493 (1087)
Q Consensus 429 -------------~~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~-~~~~~W~~fnD~~Vt~vs~~~vl~~~fGg~~~~ 493 (1087)
........|+|+|||+|.| ++++|||+||||. ..+++||+|||+.|+++++++|+...+||+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~--- 401 (415)
T 1vjv_A 325 LEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE--- 401 (415)
T ss_dssp HHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTT---
T ss_pred hhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCC---
Confidence 0112457899999999999 7999999999998 568999999999999999999988777753
Q ss_pred CCCCCCCCCCCcccccCCceEEEEEEeec
Q 001393 494 PPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
+.+||||||+|++
T Consensus 402 ----------------~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 402 ----------------SDSALILMYKGFG 414 (415)
T ss_dssp ----------------SCEEEEEEEEETT
T ss_pred ----------------cceEEEEEEEecC
Confidence 2589999999975
No 10
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1e-51 Score=495.07 Aligned_cols=299 Identities=29% Similarity=0.479 Sum_probs=253.3
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCC---CCCCCCCCHHHHHHHHHHHHhcCCC----------c
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT---ENDLPSGSIPLALQSLFYKLQYNDT----------S 257 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~~~~~Lq~Lf~~l~~s~~----------~ 257 (1087)
...+|++||.|+||||||||+||+|+++|+||++++..... ....+..++.++|+.+|..|+.... .
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~ 215 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTST 215 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CC
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccc
Confidence 46789999999999999999999999999999999853221 1233457899999999999986321 2
Q ss_pred ccchhhhhhc-----CCCccCccccccHHHHHHHHHHHHHHHhcCC-------------CcccccccccceEEeeeEEee
Q 001393 258 VATKELTKSF-----GWDTYDSFMQHDVQELNRVLCEKLEDKMKGT-------------VVEGTIQQLFEGHHMNYIECI 319 (1087)
Q Consensus 258 v~~~~l~~~~-----~~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~-------------~~~~~i~~lF~g~~~~~i~C~ 319 (1087)
+.+..+...+ ..+.|.++.||||+||+++||+.|++++... ...+.|.++|+|++.+.++|.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~ 295 (476)
T 3mhs_A 216 NRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCP 295 (476)
T ss_dssp CSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECT
T ss_pred cCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEEC
Confidence 3444443332 1356888999999999999999999886421 124578999999999999999
Q ss_pred ceeeece-eeeeeeeeeeecCCCCCHHHHHhhccceEEecCCCcccccccC-eeeceeeeEeccCCCeEEEEEeeEEeec
Q 001393 320 NVDYKST-RKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 397 (1087)
Q Consensus 320 ~c~~~s~-~~e~f~~L~L~v~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRf~~d~ 397 (1087)
.|++.+. +.++|++|+|+|++..+|+++|+.|+.+|.++|.+ |.|+.|+ ++.|.|+..|.++|+||+|||+||.|+.
T Consensus 296 ~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~ 374 (476)
T 3mhs_A 296 GCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL 374 (476)
T ss_dssp TTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECT
T ss_pred CCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccC
Confidence 9999975 48999999999999999999999999999999755 9999997 6789999999999999999999999975
Q ss_pred cccceeecCceEecCccccCCccCCCCCCCCcC-------CCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEee
Q 001393 398 MRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD-------RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFD 470 (1087)
Q Consensus 398 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~-------~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fn 470 (1087)
.+...|+++.|.||..||| ++|+..... ......|+|+|||+|.|+.++|||+||+|.. +++||+||
T Consensus 375 -~~~~~K~~~~V~fP~~Ldl----~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~-~~~W~~fn 448 (476)
T 3mhs_A 375 -NGSNRKLDDFIEFPTYLNM----KNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKIS-GGQWFKFN 448 (476)
T ss_dssp -TSCEEECCCCCBCCSEEEC----GGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECT-TSCEEEEE
T ss_pred -CCCeEECCEEEcCCCeeec----hhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEECC-CCcEEEEe
Confidence 3568899999999999999 777765432 2346789999999999999999999999975 78999999
Q ss_pred CceeEEecHHhHHHHhcCCCCCCCCCCCCCCCCCcccccCCceEEEEEEeec
Q 001393 471 DERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1087)
Q Consensus 471 D~~Vt~vs~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1087)
|+.|+++++++|+. .+||||||+|++
T Consensus 449 D~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~ 474 (476)
T 3mhs_A 449 DSMVSSISQEEVLK--------------------------EQAYLLFYTIRQ 474 (476)
T ss_dssp TTEEEEECHHHHTT--------------------------SCEEEEEEEEEE
T ss_pred CCceEECCHHHhcc--------------------------CCcEEEEEEEec
Confidence 99999999999953 389999999986
No 11
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-49 Score=497.93 Aligned_cols=223 Identities=22% Similarity=0.326 Sum_probs=196.5
Q ss_pred CCcccccccccCCccccchhHHHHHhcChhHHHHHccCCC----CCCCCCCCCHHHHHHHHHHHHhcC------------
Q 001393 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT----TENDLPSGSIPLALQSLFYKLQYN------------ 254 (1087)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~----~~~~~~~~~~~~~Lq~Lf~~l~~s------------ 254 (1087)
...+|++||.|+||||||||+||+|+++|+||++++.... .....+..++.++|++||..|+..
T Consensus 339 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~ 418 (854)
T 3ihp_A 339 LFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDG 418 (854)
T ss_dssp CCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-----------
T ss_pred ccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccc
Confidence 3468999999999999999999999999999999974221 122344578999999999999853
Q ss_pred ---------CCcccchhhhhhcCC--CccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceee
Q 001393 255 ---------DTSVATKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDY 323 (1087)
Q Consensus 255 ---------~~~v~~~~l~~~~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~ 323 (1087)
...++|..|...+++ +.|..+.||||+||+++||+.|++++++ .+.|.++|+|++.+.++|..|++
T Consensus 419 ~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---~s~i~~lF~G~l~s~i~C~~C~~ 495 (854)
T 3ihp_A 419 ERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS---SENPNEVFRFLVEEKIKCLATEK 495 (854)
T ss_dssp ----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT---SCCGGGGTCEEEEEEEEETTTTE
T ss_pred ccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc---cCCchhhcCceEEEEEEecCCCC
Confidence 347889999998865 5788899999999999999999999865 45789999999999999999999
Q ss_pred eceeeeeeeeeeeecCCC--------------------------------CCHHHHHhhccceEEecCCCcccccccC-e
Q 001393 324 KSTRKESFYDLQLDVKGC--------------------------------RDVYASFDKYVEVERLEGDNKYHAEEHG-L 370 (1087)
Q Consensus 324 ~s~~~e~f~~L~L~v~~~--------------------------------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~ 370 (1087)
++.+.++|++|+|+|+.. .+|++||+.|+.+|.++| |.|+.|+ +
T Consensus 496 vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k 572 (854)
T 3ihp_A 496 VKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAK 572 (854)
T ss_dssp EEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEE
T ss_pred EeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCc
Confidence 999999999999999853 389999999999999997 9999998 6
Q ss_pred eeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCcc
Q 001393 371 QDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRE 420 (1087)
Q Consensus 371 ~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~ 420 (1087)
+.|.|+..|.++|+||+||||||.|+.. +...|+++.|.||..|||.+|
T Consensus 573 ~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y 621 (854)
T 3ihp_A 573 SVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQL 621 (854)
T ss_dssp EEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGG
T ss_pred ceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHh
Confidence 7899999999999999999999999865 678899999999999999554
No 12
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.91 E-value=9.6e-25 Score=242.26 Aligned_cols=220 Identities=18% Similarity=0.221 Sum_probs=138.9
Q ss_pred ccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCC-CCHHHHH-HHHHHHHhcCCCcccchhhhhh-------
Q 001393 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPS-GSIPLAL-QSLFYKLQYNDTSVATKELTKS------- 266 (1087)
Q Consensus 196 ~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~-~~~~~~L-q~Lf~~l~~s~~~v~~~~l~~~------- 266 (1087)
.+||.|+||||||||.||+|+.+|.+++.++..+......+. ..+..+| ..+|..|.. ..+.|..++..
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~pQ 86 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILEK 86 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhHH
Confidence 389999999999999999999999999999877643332111 2477788 899999987 55666554443
Q ss_pred cCCCccCccccccHHHHHHHHHHHHHHH-hc--C---CC--cccccccccceEEeeeEEeeceeeeceeeeeeeeeeeec
Q 001393 267 FGWDTYDSFMQHDVQELNRVLCEKLEDK-MK--G---TV--VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV 338 (1087)
Q Consensus 267 ~~~~~~~~~~QqDa~Efl~~Lld~Le~~-~~--~---~~--~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v 338 (1087)
|++.....++||||.||+..|+..|... .. . .. ..+.+.++|. ++. +.
T Consensus 87 fae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~--------------E~~--e~-------- 142 (374)
T 2vhf_A 87 VEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM--------------EKN--EK-------- 142 (374)
T ss_dssp HC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC--------------CCC------------
T ss_pred HhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc--------------Ccc--cc--------
Confidence 4544334689999999999999987543 21 0 00 0011222222 000 00
Q ss_pred CCCCCHHHHHhhccceEEecCCCcccccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCC
Q 001393 339 KGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLD 418 (1087)
Q Consensus 339 ~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~ 418 (1087)
....+....++.- -...++.|.++|++|+||+.|| +...||-.+|.||.+||+.
T Consensus 143 ~~~e~~~qL~e~n--------------------fl~~gikisrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvt 196 (374)
T 2vhf_A 143 VGVPTIQQLLEWS--------------------FINSNLKFAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNIT 196 (374)
T ss_dssp CCCCBHHHHHHHH--------------------HHHHTEEESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCG
T ss_pred cCCcHHHHhhhHH--------------------HHHcCCeeecCCcceEEeeecc------CccccccCCCCCcchhccH
Confidence 0011222222110 0123344999999999999999 4567999999999999994
Q ss_pred ccCC-----------------------------C---CCC-------------C-----------------CcCCCCCcc
Q 001393 419 RENG-----------------------------K---YLS-------------P-----------------DADRSVRNL 436 (1087)
Q Consensus 419 ~~~~-----------------------------~---~l~-------------~-----------------~~~~~~~~~ 436 (1087)
.... . |+. . +........
T Consensus 197 dl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~ 276 (374)
T 2vhf_A 197 DLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQN 276 (374)
T ss_dssp GGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC----------------CC
T ss_pred hhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCCCcee
Confidence 2210 0 000 0 000011368
Q ss_pred EEEEEEEEEecccCCceEEEEEeeC-CCCCeEEeeC
Q 001393 437 YTLHSVLVHSGGVHGGHYYAFIRPT-LSDQWYKFDD 471 (1087)
Q Consensus 437 Y~L~gVVvH~Gs~~~GHY~ayvr~~-~~~~W~~fnD 471 (1087)
|+|.|||+ +++|||+||||.. .+++|+.||-
T Consensus 277 yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 277 MELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp EEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred EEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 99999999 9999999999973 3789999996
No 13
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.90 E-value=1.1e-23 Score=213.21 Aligned_cols=133 Identities=27% Similarity=0.509 Sum_probs=116.4
Q ss_pred CCCCCcEEEEEEccccCcCCCceecCcEEEcceEEEEEEEeCCCC----CCceEEEEeecCCCCCCCCceEEEEEEEEEE
Q 001393 48 EDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNN----VDHLSMYLDVADSGTLPYGWSRYAQFSLAVV 123 (1087)
Q Consensus 48 ~~~~~~~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~I~lyP~G~~----~~~lSiyL~~~~~~~~~~~W~~~a~f~l~l~ 123 (1087)
+...+++|+|+|+|||.++ +.++||+|.+||++|+|++||+|++ .++||+||+|... ..+.+|+++|+|+|+|+
T Consensus 14 ~~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~ 91 (155)
T 2foj_A 14 SWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKII 91 (155)
T ss_dssp TTCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEEC
T ss_pred CcCCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEE
Confidence 4567899999999999995 8899999999999999999999963 4799999999654 34678999999999999
Q ss_pred eecccceeEEecceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeec
Q 001393 124 NQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1087)
Q Consensus 124 n~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~ 182 (1087)
||.++..+..+...|+|.....+|||++||++++|.++++|||.||+++|+|+|+|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~ 150 (155)
T 2foj_A 92 NYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP 150 (155)
T ss_dssp CSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCC
T ss_pred cCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCc
Confidence 99887655666678899887889999999999999888899999999999999999553
No 14
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=99.89 E-value=4.6e-24 Score=206.09 Aligned_cols=128 Identities=25% Similarity=0.446 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccceeeeecCChhHHhhccccceecccCCCC--ceEEEEeccccHHHHHHHHH
Q 001393 535 DIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDK--VRSFRVQKQTSFMAFKEEIA 612 (1087)
Q Consensus 535 ~ip~~l~~~~~~e~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 612 (1087)
+||+||..++++|+++.++++||++|+|+|++|+|+++++|..|+| |||+|++. .++|||+|++|+.+|++.||
T Consensus 1 ~iP~hL~~rl~eE~~~~e~rrKEr~EahlY~~vkv~t~~~f~~~~g----fDL~~~~~~~~~~~rv~k~~~~~~~~~~va 76 (130)
T 2kvr_A 1 GSPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFVQSLS 76 (130)
T ss_dssp --CTHHHHHHHHHHTTHHHHTCCCCSSTTCCEEEEECCSTTTTCCC----CSSCCSSSCSCEEEECCTTSBHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhceeEEEEecHHHHHhccC----ccCcCCccCCcceEEEeccCcHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999 99998774 46899999999999999999
Q ss_pred HHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEe
Q 001393 613 KEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1087)
Q Consensus 613 ~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 671 (1087)
+.+|++++++|||.|.+|+|+|.||+. .+ .+.|++++....+. ..++++||||+
T Consensus 77 ~~lg~~~~~~RlW~~~~RqN~T~Rp~~--~d--~~~t~~~~~~~~~~-~~~~~~l~lE~ 130 (130)
T 2kvr_A 77 QTMGFPQDQIRLWPMQARSNGTKRPAM--LD--NEADGNKTMIELSD-NENPWTIFLET 130 (130)
T ss_dssp HHHCCCGGGCEEEECCCCBTTBCCCCC--CC--TTGGGTSBTHHHHT-SCSSEEEEEEC
T ss_pred HHhCCCcccEEEEEeecCCCCCCCCCC--CC--ccccHHHHHHHhhc-CCCCcEEEEeC
Confidence 999999999999999999999999983 22 22344444322222 34689999995
No 15
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.89 E-value=3.2e-23 Score=207.29 Aligned_cols=131 Identities=27% Similarity=0.440 Sum_probs=113.0
Q ss_pred cCCCCCcEEEEEEccccCcC---CCceecCcEEEcce---EEEEEEEeCCCC---CCceEEEEeecCCCCCCCCceEEEE
Q 001393 47 VEDPPTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQ 117 (1087)
Q Consensus 47 ~~~~~~~~~tw~I~nfs~l~---~~~~~Sp~F~vGG~---~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~~~W~~~a~ 117 (1087)
......++|+|+|+|||.++ ++.+.||+|.+||| +|+|++||+|++ .+|||+||+|.+. .+|+++|+
T Consensus 5 m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~ 80 (145)
T 3ivv_A 5 SGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAK 80 (145)
T ss_dssp CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEE
T ss_pred CCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEE
Confidence 34567899999999999986 36899999999996 999999999975 4899999999864 47999999
Q ss_pred EEEEEEeecccceeE-EecceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeec
Q 001393 118 FSLAVVNQIHSKYSI-RKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1087)
Q Consensus 118 f~l~l~n~~~~~~~~-~~~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~ 182 (1087)
|+|+|+||.++.... .....|+|. ...+|||++||++++|.++++|||.||+++|+|+|+|++|
T Consensus 81 f~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 81 FKFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999998876443 234578896 4688999999999999877899999999999999999875
No 16
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.84 E-value=3.4e-22 Score=206.62 Aligned_cols=133 Identities=18% Similarity=0.337 Sum_probs=110.7
Q ss_pred CCCCcEEEEEEccccCcCC-------CceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCC-CCCCceEE
Q 001393 49 DPPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGT-LPYGWSRY 115 (1087)
Q Consensus 49 ~~~~~~~tw~I~nfs~l~~-------~~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~-~~~~W~~~ 115 (1087)
.+..|+|+|+|+|||.+++ ..+.||+|++| ||+|+|++||+|++ .+|||+||.+.+++. ...+|++.
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 4678999999999998752 27999999999 99999999999975 389999999986543 23579999
Q ss_pred EEEEEEEEeecccceeEEec-----ceeeecC----CCCCcccccccCCCCCCCCCCCccccccceeeeEEEEee
Q 001393 116 AQFSLAVVNQIHSKYSIRKD-----TQHQFNA----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1087)
Q Consensus 116 a~f~l~l~n~~~~~~~~~~~-----~~h~F~~----~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~ 181 (1087)
|+|+|+|+||.++..+..+. ..+.|.. .+.+|||.+||++++|.++.+|||+||+++|+|+|.|.+
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 99999999998765444332 3467763 457899999999999988889999999999999997654
No 17
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.82 E-value=1.5e-21 Score=204.52 Aligned_cols=134 Identities=19% Similarity=0.324 Sum_probs=109.3
Q ss_pred CCCCcEEEEEEccccCcCC-------CceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCCC-CCCceEE
Q 001393 49 DPPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRY 115 (1087)
Q Consensus 49 ~~~~~~~tw~I~nfs~l~~-------~~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~-~~~W~~~ 115 (1087)
....|+|+|+|+|||.+++ +.+.||+|++| ||+|+|++||+|++ .+|||+||.+.+++.+ ..+|+|.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 3577999999999998753 57999999999 99999999999985 4799999999876543 3489999
Q ss_pred EEEEEEEEeecccceeEEec---------ceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeeccc
Q 001393 116 AQFSLAVVNQIHSKYSIRKD---------TQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLD 184 (1087)
Q Consensus 116 a~f~l~l~n~~~~~~~~~~~---------~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~~~ 184 (1087)
|+|+|+|+||.++..+.... ..+.|...+.+|||.+||++++|. ++|||+||+++|+|.|.|+..++
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCCC
Confidence 99999999998764433321 122344566789999999999995 48999999999999999987654
No 18
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.81 E-value=4e-21 Score=201.17 Aligned_cols=130 Identities=22% Similarity=0.402 Sum_probs=106.4
Q ss_pred CCCcEEEEEEccccCcCCC-------ceecCcEEE--cceEEEEEEEeCCCC---CCceEEEEeecCCCCCC-CCceEEE
Q 001393 50 PPTMKFTWTIENFSRLNTK-------KHYSDVFVV--GGYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (1087)
Q Consensus 50 ~~~~~~tw~I~nfs~l~~~-------~~~Sp~F~v--GG~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~-~~W~~~a 116 (1087)
...++|+|+|+|||.++++ .++||+|.+ |||+|+|++||+|++ .+|||+||.+.++...+ .+|+++|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 4789999999999988522 499999999 999999999999975 48999999998775544 6899999
Q ss_pred EEEEEEEeecccceeEEec-----ceeeec----CCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEee
Q 001393 117 QFSLAVVNQIHSKYSIRKD-----TQHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1087)
Q Consensus 117 ~f~l~l~n~~~~~~~~~~~-----~~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~ 181 (1087)
+|+|+|+||.++.. .... ..+.|. ..+.+|||.+||++++|.+ ++|||+||+++|+|+|.|.+
T Consensus 120 ~~~l~lldq~~~~~-~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCC-EEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCce-eeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 99999999987742 2211 122353 2356899999999999975 58999999999999998754
No 19
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.81 E-value=1.1e-20 Score=191.97 Aligned_cols=130 Identities=21% Similarity=0.342 Sum_probs=101.0
Q ss_pred CCcEEEEEEccccCcC-----CC--ceecCcEEEc--ceEEEEEEEeCCCC----CCceEEEEeecCCCCC-CCCceEEE
Q 001393 51 PTMKFTWTIENFSRLN-----TK--KHYSDVFVVG--GYKWRILIFPKGNN----VDHLSMYLDVADSGTL-PYGWSRYA 116 (1087)
Q Consensus 51 ~~~~~tw~I~nfs~l~-----~~--~~~Sp~F~vG--G~~W~I~lyP~G~~----~~~lSiyL~~~~~~~~-~~~W~~~a 116 (1087)
..++|+|+|+|||.++ ++ .+.||+|++| ||+|+|++||+|++ .+|||+||.+.+++.. ..+|++.|
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 5689999999999875 23 7899999999 99999999999964 4799999999876543 34799999
Q ss_pred EEEEEEEeecccce--eEEec-----ceeeecC-----CCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeec
Q 001393 117 QFSLAVVNQIHSKY--SIRKD-----TQHQFNA-----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1087)
Q Consensus 117 ~f~l~l~n~~~~~~--~~~~~-----~~h~F~~-----~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~ 182 (1087)
+|+|+|+||.++.. ++... ..+.|.. ...+|||.+||++++|. ++|||+||+++|+|.|.|+.|
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 99999999976531 11111 0123432 12379999999999995 489999999999999999865
No 20
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.80 E-value=1.4e-20 Score=192.86 Aligned_cols=130 Identities=21% Similarity=0.387 Sum_probs=104.7
Q ss_pred CCCcEEEEEEccccCcCC-----C--ceecCcEE--EcceEEEEEEEeCCCC---CCceEEEEeecCCCCCC-CCceEEE
Q 001393 50 PPTMKFTWTIENFSRLNT-----K--KHYSDVFV--VGGYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (1087)
Q Consensus 50 ~~~~~~tw~I~nfs~l~~-----~--~~~Sp~F~--vGG~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~-~~W~~~a 116 (1087)
...++|+|+|+|||.+++ + .+.||+|. +|||+|+|++||+|++ .+|||+||.+.+++..+ .+|++.|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 468999999999998852 2 38999996 7999999999999974 38999999998765544 6899999
Q ss_pred EEEEEEEeecccceeEEecc-----eeeecC----CCCCcccccccCCCCCCCCCCCccccccceeeeEEEEee
Q 001393 117 QFSLAVVNQIHSKYSIRKDT-----QHQFNA----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1087)
Q Consensus 117 ~f~l~l~n~~~~~~~~~~~~-----~h~F~~----~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~ 181 (1087)
+|+|+|+||.+... ..... .+.|.. .+.+|||.+||++++|.++ +|||+||+++|+|+|.|.+
T Consensus 96 ~~~l~ll~q~~~~~-~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCC-EEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCcc-ceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 99999999987642 22211 235642 4578999999999999653 4999999999999998643
No 21
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.78 E-value=1.8e-20 Score=195.89 Aligned_cols=129 Identities=20% Similarity=0.368 Sum_probs=105.9
Q ss_pred CCcEEEEEEccccCcC-----CC--ceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCCC-CCCceEEEE
Q 001393 51 PTMKFTWTIENFSRLN-----TK--KHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYAQ 117 (1087)
Q Consensus 51 ~~~~~tw~I~nfs~l~-----~~--~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~-~~~W~~~a~ 117 (1087)
..++|+|+|+|||.++ ++ .+.||+|++| ||+|+|.+||+|++ .+|||+||.+.+++.. ..+|++.|+
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 6789999999999885 23 5999999999 99999999999974 3799999999876543 347999999
Q ss_pred EEEEEEeecccceeEEec-----ceeeecCC----CCCcccccccCCCCCCCCCCCccccccceeeeEEEEee
Q 001393 118 FSLAVVNQIHSKYSIRKD-----TQHQFNAR----ESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1087)
Q Consensus 118 f~l~l~n~~~~~~~~~~~-----~~h~F~~~----~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~ 181 (1087)
|+|+|+||.++..++... ..+.|... +.+|||.+||++++|.+ +|||+||+++|+|.|.|..
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 999999998775443322 12567542 46899999999999964 6999999999999997644
No 22
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.76 E-value=8.9e-20 Score=195.69 Aligned_cols=130 Identities=19% Similarity=0.354 Sum_probs=106.6
Q ss_pred CCCcEEEEEEccccCcCC-------CceecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEeecCCCCC-CCCceEEE
Q 001393 50 PPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYA 116 (1087)
Q Consensus 50 ~~~~~~tw~I~nfs~l~~-------~~~~Sp~F~vG--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~-~~~W~~~a 116 (1087)
...++|+|+|+|||.+++ ..+.||+|++| ||.|+|.+||+|++ .+|||+||.+.+++.. ...|++.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 378999999999998752 27999999999 99999999999974 4899999999876543 34899999
Q ss_pred EEEEEEEeecccceeEEec-----ceeeec----CCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEee
Q 001393 117 QFSLAVVNQIHSKYSIRKD-----TQHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1087)
Q Consensus 117 ~f~l~l~n~~~~~~~~~~~-----~~h~F~----~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~ 181 (1087)
+|+|+|+||.++..+.... ..+.|. ..+.+|||.+||++++|.+ +|||+||+++|+|.|.|.+
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTT
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccc
Confidence 9999999998775433321 234564 2346899999999999964 8999999999999998755
No 23
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.76 E-value=5.9e-19 Score=199.18 Aligned_cols=127 Identities=29% Similarity=0.472 Sum_probs=107.3
Q ss_pred CCcEEEEEEccccCcC---CCceecCcEEEcce---EEEEEEEeCCCC---CCceEEEEeecCCCCCCCCceEEEEEEEE
Q 001393 51 PTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQFSLA 121 (1087)
Q Consensus 51 ~~~~~tw~I~nfs~l~---~~~~~Sp~F~vGG~---~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~~~W~~~a~f~l~ 121 (1087)
..++|+|+|+|||.++ ++.+.||+|.+||| +|+|.+||+|++ .+|+|+||.|.+. .+|.+.|+|+|+
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~ 80 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS 80 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEE
T ss_pred EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEE
Confidence 5689999999999986 67899999999996 999999999963 4899999999854 368999999999
Q ss_pred EEeecccceeEEe-cceeeecCCCCCcccccccCCCCCCCCCCCccccccceeeeEEEEeec
Q 001393 122 VVNQIHSKYSIRK-DTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1087)
Q Consensus 122 l~n~~~~~~~~~~-~~~h~F~~~~~dwGf~~Fi~l~~L~~~~~gfL~nD~l~I~~~V~v~~~ 182 (1087)
|+|++++...... ...|+|.. +.+|||++||++++|.++.+|||.||+++|+|+|+|+++
T Consensus 81 l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 81 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp EECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9999877644332 46788875 468999999999999887889999999999999999975
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.71 E-value=7.7e-09 Score=123.75 Aligned_cols=138 Identities=18% Similarity=0.345 Sum_probs=104.6
Q ss_pred CccCCCccCCCCCcEEEEEEccccCcC---CCceecCcEEE-cceEEEEEEEeCCCCCCceEEEEeecCCCCCC-CCceE
Q 001393 40 STVENQQVEDPPTMKFTWTIENFSRLN---TKKHYSDVFVV-GGYKWRILIFPKGNNVDHLSMYLDVADSGTLP-YGWSR 114 (1087)
Q Consensus 40 ~~~~~~~~~~~~~~~~tw~I~nfs~l~---~~~~~Sp~F~v-GG~~W~I~lyP~G~~~~~lSiyL~~~~~~~~~-~~W~~ 114 (1087)
.+++|..+.+..+..+.|+|.||+.+. +..++||+|+. .||.++|.++|+| ..++|+|+.+..++.++ ..|+|
T Consensus 393 IAIDDIs~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~--~~~~~~~~~l~sG~~D~~L~WP~ 470 (592)
T 4gwm_A 393 LSIDDINLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH--VTNAGIYFHLISGANDDQLQWPC 470 (592)
T ss_dssp EEEEEEEEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS--SSEEEEEEEEECCTTGGGSCSSC
T ss_pred EEEeeEEEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC--CceEEEEEEEecCCCCCCccCCC
Confidence 348899999999999999999999874 45799999976 5999999999865 46899999999876543 48999
Q ss_pred E-EEEEEEEEeecccce---eEEecc-----------eeeec-----------------CCCCCcccccccCCCCCCCCC
Q 001393 115 Y-AQFSLAVVNQIHSKY---SIRKDT-----------QHQFN-----------------ARESDWGFTSFMPLGDLYDPS 162 (1087)
Q Consensus 115 ~-a~f~l~l~n~~~~~~---~~~~~~-----------~h~F~-----------------~~~~dwGf~~Fi~l~~L~~~~ 162 (1087)
. -+++++|++|..... +..... ...|. ..+.+|||+.||+++.|. +
T Consensus 471 ~~~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~ 548 (592)
T 4gwm_A 471 PWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--S 548 (592)
T ss_dssp CSEEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--S
T ss_pred CCCEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--h
Confidence 4 689999999964321 111100 00010 112358999999999994 5
Q ss_pred CCccccccceeeeEEEEee
Q 001393 163 RGYLVNDSVVVEAEVAVRK 181 (1087)
Q Consensus 163 ~gfL~nD~l~I~~~V~v~~ 181 (1087)
+.||+||.+.|.+.|.=+.
T Consensus 549 r~fiK~d~~~i~~~~eD~~ 567 (592)
T 4gwm_A 549 RDFIKGDDVYILLTVEDIS 567 (592)
T ss_dssp TTSSBTTBEEEEEEEEECG
T ss_pred cCcccCCeEEEEEEEEeCc
Confidence 7899999999999886433
No 25
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.42 E-value=0.01 Score=70.91 Aligned_cols=228 Identities=11% Similarity=0.116 Sum_probs=145.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEee
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 672 (1087)
...+.+.+.+|+.++.+.||+.+|++|+.+|||.. ++.+.+|..++.... +.+|.++....... ..-.||-|+.
T Consensus 254 ~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~---~~~~~~p~~~i~~~~-~~~L~d~l~~~~~~--~~~~l~YevL 327 (530)
T 2ylm_A 254 GFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKS---QGYRDGPGNPLRHNY-EGTLRDLLQFFKPR--QPKKLYYQQL 327 (530)
T ss_dssp CEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECC---CTTSCSCCSBCCTTC-CSCHHHHSTTSCSS--SCCEEEEEEC
T ss_pred CeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEec---ccccCCCCCccccCC-CCcHHHHhhcccCC--CCCeEEEEEC
Confidence 35678999999999999999999999999999976 234456777776443 46888877432211 1236888985
Q ss_pred cCCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCC--CCcEEEEEEeecCCCce
Q 001393 673 FGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDP--DEEIELYEEIKFEPCVM 750 (1087)
Q Consensus 673 ~~~~~~~~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~--dt~l~lyEEik~~p~~~ 750 (1087)
+-+ ... ......+-++ +.++..+.- .=.++|+++.+|+||+..+.+++|+++ ..+|.+||-. -+.+
T Consensus 328 ~ip----l~E-lE~~r~~kv~--w~~~~~~~~--~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~---~~ki 395 (530)
T 2ylm_A 328 KMK----ITD-FENRRSFKCI--WLNSQFREE--EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIV---SYKI 395 (530)
T ss_dssp SSC----HHH-HHSBCCEEEE--EECTTSCEE--EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEE---TTEE
T ss_pred CCC----HHH-HhhCceEEEE--EECCCCceE--EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEE---CCEE
Confidence 311 100 0122233333 336655543 677888999999999999999999985 5779998654 2344
Q ss_pred ecccCcCCccccccCCC--CCEEEEEeCCCCCCccCCCCCCHHHHHHHhhceeEEEEEecCCCC--CCcEEEEEcCCCCH
Q 001393 751 CEHLDKRTSFRLSQIED--GDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPK--EDAFCLELSKQHSY 826 (1087)
Q Consensus 751 ie~i~~~~t~~~~el~~--GDIi~fQ~~~~~~~~~~~~y~~v~~yy~~L~nr~~v~f~~~~~~~--~~~f~l~ls~~~~Y 826 (1087)
....+.+.++. .|.+ .+.|-.+..+.++.. .+.-.+ ..|.|-...++... ..+|.+.+...-++
T Consensus 396 ~ki~~~~~~i~--~i~d~~~~~~rieeip~ee~~----~~~~~~------~li~V~hf~k~~~~~~G~PF~~~v~~gEt~ 463 (530)
T 2ylm_A 396 IGVHQEDELLE--CLSPATSRTFRIEEIPLDQVD----IDKENE------MLVTVAHFHKEVFGTFGIPFLLRIHQGEHF 463 (530)
T ss_dssp EEEECTTSBGG--GSCCCTTCEEEEEECCGGGSS----CCTTTE------EEEEEEEESSSTTCEEEEEEEEEEETTCCH
T ss_pred EEecCCCcccc--cccccccceEEEEECCHHHhc----cCCCCc------EEEEEEEeccCcccccCCCeEEEecCCCcH
Confidence 34455555543 3444 666666555433211 000001 23444222222211 22699999999999
Q ss_pred HHHHHHHHHHhCCCC--CCceEEecc
Q 001393 827 DEVVERVARKIGLDD--PSKIRLTPH 850 (1087)
Q Consensus 827 ~~la~~va~~l~~~~--p~~lr~~~~ 850 (1087)
.++-+++.++|||.| -.+++|--+
T Consensus 464 ~~~k~Rl~~rlgv~~keF~K~Kfa~v 489 (530)
T 2ylm_A 464 REVMKRIQSLLDIQEKEFEKFKFAIV 489 (530)
T ss_dssp HHHHHHHHHHHCCCHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCHhhhhhEEEEEE
Confidence 999999999999852 346787653
No 26
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.19 E-value=0.052 Score=54.78 Aligned_cols=133 Identities=17% Similarity=0.307 Sum_probs=92.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEeec
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 673 (1087)
.+++|..++|+.+|+++|++..|++++++||..- ++ .|.+ +.||.+.. + . ..-.++|-+..
T Consensus 33 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~----g~------~L~d---~~tL~~~~-i----~-~~~~l~l~~~~ 93 (172)
T 3u30_A 33 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA----GK------QLED---GRTLSDYN-I----Q-KESTLHLVLRL 93 (172)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET----TE------ECCT---TCBTGGGT-C----C-TTCEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC----Cc------cccc---cCCHhHcC-C----c-ccceeeeeecc
Confidence 3578888999999999999999999999998741 11 2322 23444421 1 1 12245554321
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecc
Q 001393 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (1087)
Q Consensus 674 ~~~~~~~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~ 753 (1087)
...+.+|+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..
T Consensus 94 -------------~gg~~i~Vk~~~g~--~~----~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g---~~ 145 (172)
T 3u30_A 94 -------------RGGMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQ 145 (172)
T ss_dssp -------------CCCEEEEEEESSCC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EE
T ss_pred -------------cccccceeecccCc--ce----eEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC------C---cc
Confidence 12368888876543 32 235789999999999999999999987766653 2 24
Q ss_pred cCcCCccccccCCCCCEEEE
Q 001393 754 LDKRTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 754 i~~~~t~~~~el~~GDIi~f 773 (1087)
++...|+....+++|+.|..
T Consensus 146 L~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 146 LEDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp CCTTSBSGGGTCCTTCEEEE
T ss_pred CCCCCcHHHhCCCCCCEEEE
Confidence 56788999999999998864
No 27
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=96.10 E-value=0.067 Score=52.47 Aligned_cols=135 Identities=17% Similarity=0.293 Sum_probs=94.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEeec
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 673 (1087)
.++++..++|+.+|+++|++..|+|++++||..- ++ .+.+ +.|+.+.. . . +.-.+++....
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~----g~------~L~d---~~tL~~~~-i----~-~~~~l~l~~~~ 73 (152)
T 3b08_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA----GK------QLED---GRTLSDYN-I----Q-KESTLHLVLRL 73 (152)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET----TE------ECCT---TSBTGGGT-C----C-TTCEEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC----Ce------ECcC---cccHHHhc-c----C-CCCeeEEEeec
Confidence 3567788899999999999999999999998651 11 2321 23444421 1 1 13356665421
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecc
Q 001393 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (1087)
Q Consensus 674 ~~~~~~~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~ 753 (1087)
...+-+++|..+-. +. .+-++.+.+|.+|...|.+..|+|++..-.+|. + ..
T Consensus 74 -------------~~~~~i~Vk~~~g~--~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~------g---~~ 125 (152)
T 3b08_A 74 -------------RGGMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQ 125 (152)
T ss_dssp -------------TTCEEEEEEESSSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EE
T ss_pred -------------ccccceeeeecCCC--EE----EEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC------C---EE
Confidence 12367888877642 22 345789999999999999999999887766652 2 24
Q ss_pred cCcCCccccccCCCCCEEEEEe
Q 001393 754 LDKRTSFRLSQIEDGDIICFQK 775 (1087)
Q Consensus 754 i~~~~t~~~~el~~GDIi~fQ~ 775 (1087)
++.+.|+....+.+|+.|..-.
T Consensus 126 L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 126 LEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCCCCHHHcCCCCCCEEEEEE
Confidence 5678899999999999887654
No 28
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.06 E-value=0.044 Score=56.38 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=101.1
Q ss_pred cCCCCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhh
Q 001393 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKS 266 (1087)
Q Consensus 187 ~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~ 266 (1087)
.|+.....|.+=|+=.-|.||+||++=+|=+.... ++.++.++..++ +..|...
T Consensus 4 ~f~~~~~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----------------------~~~aw~~f~~Gd----~~~fV~~ 57 (211)
T 3mp2_A 4 PFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFF----------------------NNEAWEKFKKGD----VMDFVNL 57 (211)
T ss_dssp CCCEEEETTEEEECCCTTCHHHHHHHHHHTTCTTC----------------------CCHHHHHHTTTC----CHHHHHH
T ss_pred CCcceeECCEEEEEccCCCcHHHHHHHHHHhcChh----------------------HHHHHHHHhCCC----hHHHHHH
Confidence 45555667777788788999999998776444332 333443333332 1222221
Q ss_pred c-CCCccCccccccHHHHHHHHHHHHHHHhcCCCcccccccccceEEeeeEEeeceeeeceeeeeeeeeeeecCCCCCHH
Q 001393 267 F-GWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVY 345 (1087)
Q Consensus 267 ~-~~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~c~~~s~~~e~f~~L~L~v~~~~sL~ 345 (1087)
+ .......++-.||++++..|+.. +-...+...+.|. |+. +.+.+...-..+...+
T Consensus 58 ~Ya~~~~~~G~~gDa~~~L~~Ll~~----------------~~~a~~v~~~~C~-Cg~---~~~~~~G~v~~~~~~~--- 114 (211)
T 3mp2_A 58 CYAATTLARGHSGDAEYLLELMLND----------------YSTAKIVLAAKCG-CGE---KEIVLERAVFKLTPLK--- 114 (211)
T ss_dssp HHHHHTCCTTSCCCHHHHHHHHHTT----------------CCCEEEEEEEEET-TEE---EEEEEEESEEESCCBS---
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHh----------------hccceEEEEEEEc-CCC---ceEEEeeeEEEEEeee---
Confidence 1 00123456788999999999732 1223455677887 876 3333433333332211
Q ss_pred HHHhhccceEEecCCCcc-cccccCeeeceeeeEeccCCCeEEEEEeeEEeeccccceeecCceEecCccccCCccCCCC
Q 001393 346 ASFDKYVEVERLEGDNKY-HAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKY 424 (1087)
Q Consensus 346 e~L~~~~~~E~l~g~n~y-~C~~c~~~~a~k~~~i~~lP~vL~i~LkRf~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~ 424 (1087)
.+ -.| .|..|+..... ++.+.+-.++|- ++. .|..++.+ +..
T Consensus 115 ------------~~-~~~g~C~~c~~~~~~---~v~~v~Gt~i~~----------------~~~--~~~~v~~~---~~~ 157 (211)
T 3mp2_A 115 ------------ES-FNYGVCGDCMQVNTC---RFLSVEGSGVFV----------------HDI--LSKQTPEA---MFV 157 (211)
T ss_dssp ------------SC-EEEEECTTTCCEEEE---EEEEEEEEEEEE----------------EEE--ECSCCCGG---GBS
T ss_pred ------------cC-CCceECCCCCceeEE---EEEEeeeeEEEE----------------cCC--CCcccccc---cce
Confidence 01 124 68788653221 122222211110 110 12223331 111
Q ss_pred CCCCcCCCCCccEEEEEEEEEecccCCceEEEEEeeCCCCCeEEeeCceeEEec
Q 001393 425 LSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (1087)
Q Consensus 425 l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~vs 478 (1087)
+. + .+-++.+|+.++|||+.+.... + +.+|-..+.+++
T Consensus 158 v~-------~-----~~~~vF~G~~~~GHY~~~~~~~--~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 158 VK-------P-----VMHAVYTGTTQNGHYMVDDIEH--G--YCVDGMGIKPLK 195 (211)
T ss_dssp SC-------C-----SEEEEEESCTTTCEEEEEETTT--T--EEEETTEEECCC
T ss_pred ee-------c-----eeEEEEEcCCCCceEEEEeccc--c--eEEeCCceeEcc
Confidence 11 1 2335669999999999997652 3 899999998885
No 29
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.01 E-value=0.041 Score=54.72 Aligned_cols=138 Identities=10% Similarity=0.129 Sum_probs=94.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEeec
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 673 (1087)
.++.+..++|+.+|+++|++..|+|++++||..+. ++ ..|.+ +.||.+.. + . +.-.+++-...
T Consensus 15 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~---~g-----~~L~d---~~tL~~y~-i----~-~~~~l~l~~~~ 77 (159)
T 3rt3_B 15 FQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP---SG-----VALQD---RVPLASQG-L----G-PGSTVLLVVDK 77 (159)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET---TC-----CBCCT---TSCGGGGT-C----C-TTCEEEEEECC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC---CC-----CCCCC---CCCHHHcC-C----C-CCCEEEEEccC
Confidence 35678888999999999999999999999987441 11 12322 23554421 1 1 13345554421
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecc
Q 001393 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (1087)
Q Consensus 674 ~~~~~~~~~~~~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~ 753 (1087)
....+-||+|..+-. ++. +-|+.+.+|.+|...|.++.|+|++..-.+|. + ..
T Consensus 78 ------------~~~~m~i~vk~~~g~--~~~----~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------G---~~ 130 (159)
T 3rt3_B 78 ------------SDEPLSILVRNNKGR--SST----YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KP 130 (159)
T ss_dssp ------------CCCCEEEEEECTTSC--EEE----EEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EE
T ss_pred ------------CCCcEEEEEECCCCC--EEE----EEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC------C---ee
Confidence 112377888865432 322 46789999999999999999999887666652 2 34
Q ss_pred cCcCCccccccCCCCCEEEEEe
Q 001393 754 LDKRTSFRLSQIEDGDIICFQK 775 (1087)
Q Consensus 754 i~~~~t~~~~el~~GDIi~fQ~ 775 (1087)
++...|+....+++|+.|-.-.
T Consensus 131 L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 131 LEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCTTSBGGGGTCCTTCEEEEEE
T ss_pred cCCCCCHHHcCCCCCCEEEEEE
Confidence 6678899999999999887653
No 30
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.93 E-value=0.13 Score=51.76 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=88.2
Q ss_pred ceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCccccccc--ccccceE
Q 001393 900 KNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENI--NDQYWTL 977 (1087)
Q Consensus 900 k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~i--~~~~~~~ 977 (1087)
+.|+|+.-..+- ..+.+-|+.+.||.+|.+.++.+.+++. .+.||. ++| +.+..+..+.+. .+ ..++
T Consensus 19 ~~m~i~Vk~~~g---~~~~l~v~~~~tV~~lK~~I~~~~gip~--~~QrL~--~~g---~~L~d~~tL~~~~i~~-~~~l 87 (172)
T 3u30_A 19 SHMQIFVKTLTG---KTITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI--FAG---KQLEDGRTLSDYNIQK-ESTL 87 (172)
T ss_dssp CCEEEEEEETTT---EEEEEEECTTCBHHHHHHHHHHHHCCCG--GGEEEE--ETT---EECCTTCBTGGGTCCT-TCEE
T ss_pred CcEEEEEEeCCC---CEEEEEECCCCcHHHHHHHHHHHHCcCh--HHEEEE--ECC---ccccccCCHhHcCCcc-ccee
Confidence 345555543332 2467889999999999999999999873 345654 566 456777777764 23 3455
Q ss_pred EEEecccccccCCCCCeEEEEEeeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEec
Q 001393 978 RAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSL 1057 (1087)
Q Consensus 978 ~~e~iP~~e~~~~~~~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~ 1057 (1087)
.+-. . ..+.+.|.| |... |..|.+.+.+..|+.++|++|+++.|++.... ++-| .
T Consensus 88 ~l~~-~------~~gg~~i~V----k~~~---------g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~----~ 142 (172)
T 3u30_A 88 HLVL-R------LRGGMQIFV----KTLT---------GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIF----A 142 (172)
T ss_dssp EEEE-C------CCCCEEEEE----EESS---------CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEE----T
T ss_pred eeee-c------cccccccee----eccc---------CcceeEEecCCCCHHHHHHHHHHHhCCCceeE-EEEE----C
Confidence 4421 1 123455544 3333 88889999999999999999999999987543 2222 3
Q ss_pred CCcccccCchhhhh
Q 001393 1058 GRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1058 ~~~~y~~d~~~~~~ 1071 (1087)
+ .-|+|+..|.+
T Consensus 143 g--~~L~D~~tL~~ 154 (172)
T 3u30_A 143 G--KQLEDGRTLSD 154 (172)
T ss_dssp T--EECCTTSBSGG
T ss_pred C--ccCCCCCcHHH
Confidence 3 34666655554
No 31
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.76 E-value=0.35 Score=47.16 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=82.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCccccccc--ccccceEEEEecccccccCCCCC
Q 001393 916 IHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENI--NDQYWTLRAEEIPEEEKNLGPND 993 (1087)
Q Consensus 916 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~i--~~~~~~~~~e~iP~~e~~~~~~~ 993 (1087)
.+.+-++.+.||.||.+++..+.+++. ...||. ++|| .+..+..+.+. .+ ..++.+..-+ .+.
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~--~~q~L~--~~g~---~L~d~~tL~~~~i~~-~~~l~l~~~~-------~~~ 76 (152)
T 3b08_A 12 TITLEVEPSDTIENVKAKIQDKEGIPP--DQQRLI--FAGK---QLEDGRTLSDYNIQK-ESTLHLVLRL-------RGG 76 (152)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCG--GGEEEE--ETTE---ECCTTSBTGGGTCCT-TCEEEEEECC-------TTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcCh--HHeEEE--ECCe---ECcCcccHHHhccCC-CCeeEEEeec-------ccc
Confidence 347789999999999999999999873 345554 4565 46666667663 23 3455543221 234
Q ss_pred eEEEEEeeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 994 RLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 994 ~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
+.|.|- ... |..|.+.+.+..|+.++|++|+++.|++.. +.++ +..+ .-|+|+..+.+.
T Consensus 77 ~~i~Vk----~~~---------g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---~qrL--~~~g--~~L~d~~tL~~~ 135 (152)
T 3b08_A 77 MQIFVK----TLT---------GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAG--KQLEDGRTLSDY 135 (152)
T ss_dssp EEEEEE----ESS---------SCEEEEEECTTCBHHHHHHHHHHHHCCCGG---GEEE--EETT--EECCTTSBTGGG
T ss_pred cceeee----ecC---------CCEEEEEeCCCCcHHHHHHHHHHHhCcChh---hEEE--EECC--EECCCCCCHHHc
Confidence 455442 222 788899999999999999999999999854 3443 3233 356776666554
No 32
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.08 E-value=1.1 Score=44.19 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=82.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhhccCCCCCccEEEEEEe-ccEEEEecCCccccccc--ccccceEEEEecccccccCCCC
Q 001393 916 IHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVF-YHKIYKIFAPNEKIENI--NDQYWTLRAEEIPEEEKNLGPN 992 (1087)
Q Consensus 916 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~v~-~~k~~~~~~~~~~i~~i--~~~~~~~~~e~iP~~e~~~~~~ 992 (1087)
.+.+-|+.+.||.+|.+.++.+.+++.+ +.||.- + +| +.+..+..+.+. .+ ..++.+-.-+ .++
T Consensus 14 ~~~l~v~~~~tV~~lK~~I~~~~gip~~--~QrL~~-~~~g---~~L~d~~tL~~y~i~~-~~~l~l~~~~------~~~ 80 (159)
T 3rt3_B 14 EFQVSLSSSMSVSELKAQITQKIGVHAF--QQRLAV-HPSG---VALQDRVPLASQGLGP-GSTVLLVVDK------SDE 80 (159)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCCGG--GEEEEE-ETTC---CBCCTTSCGGGGTCCT-TCEEEEEECC------CCC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCHH--HEEEEE-cCCC---CCCCCCCCHHHcCCCC-CCEEEEEccC------CCC
Confidence 4578999999999999999999999743 355542 3 45 346767777663 33 3455542221 123
Q ss_pred CeEEEEEeeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 993 DRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 993 ~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
.+-|.| |... |--|.+.|.+.+|+.++|++|+++.|++... .++ +..+ .-|+|+..+.+.
T Consensus 81 ~m~i~v----k~~~---------g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---q~L--~~~G--~~L~d~~tL~~y 140 (159)
T 3rt3_B 81 PLSILV----RNNK---------GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL---FWL--TFEG--KPLEDQLPLGEY 140 (159)
T ss_dssp CEEEEE----ECTT---------SCEEEEEECTTSBHHHHHHHHHHHHTCCGGG---EEE--EETT--EECCTTSBGGGG
T ss_pred cEEEEE----ECCC---------CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHH---EEE--EECC--eecCCCCCHHHc
Confidence 344444 3333 7778899999999999999999999998643 343 3333 346776555543
No 33
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=93.62 E-value=0.68 Score=50.64 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=48.6
Q ss_pred cCCCCCcccccccccCCccccchhHHHHHhcChhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcccchhhhhh
Q 001393 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKS 266 (1087)
Q Consensus 187 ~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~~ 266 (1087)
.|+.....|++=|+=.-|.||+||++=+|=+... . .. ..+|++++.++..++. ..|...
T Consensus 93 ~w~~~~~~G~~vLkq~dNNCwVNaa~l~LQ~~~~--------~---F~------~~~l~~aw~~f~~Gd~----~~FVa~ 151 (315)
T 2fe8_A 93 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEV--------K---FN------APALQEAYYRARAGDA----ANFCAL 151 (315)
T ss_dssp TSCCCEETTEECCCCCTTTHHHHHHHHHHHTSCC--------C---BS------SHHHHHHHHHHHHTCC----HHHHHH
T ss_pred CCceEEECCEEEEeecCCccHHHHHHHHHHhcCC--------c---cC------CHHHHHHHHHHhCCCh----HHHHHH
Confidence 3445566677778878899999999766533221 0 00 1366677666665542 222221
Q ss_pred c-CCCccCccccccHHHHHHHHHH
Q 001393 267 F-GWDTYDSFMQHDVQELNRVLCE 289 (1087)
Q Consensus 267 ~-~~~~~~~~~QqDa~Efl~~Lld 289 (1087)
+ .......++-.||++++..|+.
T Consensus 152 ~Ya~~~~~~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 152 ILAYSNKTVGELGDVRETMTHLLQ 175 (315)
T ss_dssp HHHHTTCCTTSCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCCCccHHHHHHHHHh
Confidence 1 0112345678899999999853
No 34
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=89.94 E-value=0.71 Score=41.48 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=56.1
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
+..|.|++|-.|- +.+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....+++
T Consensus 5 ~~~i~ikVk~~~g--~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~me 69 (94)
T 2io1_B 5 NDHINLKVAGQDG--SVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 69 (94)
T ss_dssp -CEEEEEEECTTS--CEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCC
T ss_pred CCeEEEEEECCCC--CEE----EEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 3457788775443 343 467899999999999999999999865433342 2 457788999999999
Q ss_pred CCCEEEEEeC
Q 001393 767 DGDIICFQKS 776 (1087)
Q Consensus 767 ~GDIi~fQ~~ 776 (1087)
+||+|=+-..
T Consensus 70 dgD~Idv~~~ 79 (94)
T 2io1_B 70 DEDTIDVFQQ 79 (94)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998866544
No 35
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=89.34 E-value=1.1 Score=40.11 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=55.4
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..|.|++|-.| ...+ .+-|.++++++.|+...+++.|+|++.--.+|. + +.|.++.|....++.+
T Consensus 4 ~~i~ikVk~~~--g~~v----~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~med 68 (91)
T 2io0_B 4 DHINLKVAGQD--GSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMED 68 (91)
T ss_dssp CEEEEEEECTT--SCEE----EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET------T---EECCTTCCTTTTTCCT
T ss_pred CeEEEEEECCC--CCEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 34666666433 3333 567899999999999999999999865444442 2 4577889999999999
Q ss_pred CCEEEEEeC
Q 001393 768 GDIICFQKS 776 (1087)
Q Consensus 768 GDIi~fQ~~ 776 (1087)
||+|=+-..
T Consensus 69 gD~Idv~~~ 77 (91)
T 2io0_B 69 EDTIDVFQQ 77 (91)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998866554
No 36
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=88.22 E-value=0.92 Score=38.77 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=47.7
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEE
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1087)
+-|+.+.+|+.|+..-|++-|+|+++.|.|-= + + +.++++.|+...|+.|||-|=.
T Consensus 24 f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF----D-G---dRLdp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 24 LSIPVDFTVKDLIKRYCTEVKISFHERIRLEF----E-G---EWLDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE----T-T---EECCTTSBGGGSSCCTTCEEEE
T ss_pred EEecCCCCHHHHHHHHHHHcCCCcCceEEEEE----c-C---cccCccCChhhhCCcCCceeee
Confidence 45889999999999999999999998886621 1 2 6799999999999999998744
No 37
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=86.04 E-value=0.95 Score=38.37 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=46.0
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1087)
++-|.++.+++.|+...+++.|+|++.--.+|. + +.+.++.|....++.+||+|=+
T Consensus 15 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 15 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET------T---EECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCCCCCEEEE
Confidence 567899999999999999999999876544442 2 4578889999999999998843
No 38
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=85.57 E-value=1.4 Score=40.79 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=58.2
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
....|.|++|--|-. .+ .+-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....++
T Consensus 23 ~~~~I~IkVk~~~g~--~i----~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd------G---~~L~~~~Tp~dl~m 87 (110)
T 2k8h_A 23 ETALVAVKVVNADGA--EM----FFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD------G---TPIDETKTPEELGM 87 (110)
T ss_dssp CCCCEEEEEEETTSC--CE----EEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS------S---CBCCSSSHHHHHHC
T ss_pred CCCeEEEEEECCCCC--EE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCC
Confidence 445688888755433 33 677899999999999999999999885434442 2 46788899999999
Q ss_pred CCCCEEEEEeC
Q 001393 766 EDGDIICFQKS 776 (1087)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1087)
.+||+|=+-..
T Consensus 88 EDgD~Idv~~~ 98 (110)
T 2k8h_A 88 EDDDVIDAMVE 98 (110)
T ss_dssp SSEEEEEEECC
T ss_pred CCCCEEEEEEc
Confidence 99998866544
No 39
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=85.05 E-value=2.4 Score=39.46 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=53.2
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..|-|.++ +.....+ ++-|.++.+++.|+...+++.|++.++--.+|. + +.|.++.|....++.|
T Consensus 39 ~~I~LKV~--~qdg~ev----~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD------G---~rI~~~~TP~dL~MED 103 (115)
T 3kyd_D 39 EYIKLKVI--GQDSSEI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGMEE 103 (115)
T ss_dssp CEEEEEEE--CTTSCEE----EEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET------T---EECCTTCCTTTTTCCT
T ss_pred CeEEEEEE--cCCCCEE----EEEEccCChHHHHHHHHHHHhCCChhhEEEEEC------C---eECCCCCCHHHcCCCC
Confidence 44555554 4444443 678999999999999999999998765544553 2 4577889999999999
Q ss_pred CCEEEE
Q 001393 768 GDIICF 773 (1087)
Q Consensus 768 GDIi~f 773 (1087)
||+|=+
T Consensus 104 gD~IdV 109 (115)
T 3kyd_D 104 EDVIEV 109 (115)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 998854
No 40
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=84.92 E-value=3.4 Score=37.91 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=56.3
Q ss_pred CCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCcccccc
Q 001393 685 KSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQ 764 (1087)
Q Consensus 685 ~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~e 764 (1087)
..+..|.|++|- + ...+ .+-|.++++++.|+...+++.|++++.--.+|. + +.|.++.|....+
T Consensus 27 ~~~~~I~IkV~~-~--g~~i----~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd------G---~rl~~~~Tp~dl~ 90 (106)
T 2eke_C 27 KPETHINLKVSD-G--SSEI----FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLD 90 (106)
T ss_dssp CCCSEEEEEEEC-S--SCEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTT
T ss_pred CCCCeEEEEEec-C--CcEE----EEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---eEcCCCCCHHHcC
Confidence 345668888886 4 3332 567899999999999999999999874333342 2 4577889999999
Q ss_pred CCCCCEEEEEe
Q 001393 765 IEDGDIICFQK 775 (1087)
Q Consensus 765 l~~GDIi~fQ~ 775 (1087)
+.+||+|=+-.
T Consensus 91 medgD~Idv~~ 101 (106)
T 2eke_C 91 MEDNDIIEAHR 101 (106)
T ss_dssp CCTTEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999886543
No 41
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=84.53 E-value=0.98 Score=41.39 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=32.0
Q ss_pred CceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 001393 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1087)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~ 628 (1087)
...++.+..++|+.+|+++|++..|+|++++| |.+.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~g 72 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIG 72 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEET
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-Eecc
Confidence 35678899999999999999999999999999 7763
No 42
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=84.22 E-value=2.4 Score=36.95 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=57.1
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
...+-||+|..+-. .+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....|.
T Consensus 10 ~~~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 10 GGSMLIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKIL 74 (88)
T ss_dssp CCCEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EECCTTSBGGGGTCC
T ss_pred CCcEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC------C---eECCCCCcHHHcCCC
Confidence 44588999987643 22 346889999999999999999999887766662 1 245678899999999
Q ss_pred CCCEEEEE
Q 001393 767 DGDIICFQ 774 (1087)
Q Consensus 767 ~GDIi~fQ 774 (1087)
+|+.|..-
T Consensus 75 ~~~~i~l~ 82 (88)
T 3dbh_I 75 GGSVLHLV 82 (88)
T ss_dssp TTCEEEEC
T ss_pred CCCEEEEE
Confidence 99998764
No 43
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=84.07 E-value=2.1 Score=38.25 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
...|.|++|- .....+ ++-|.++.+++.|+...+++.|++++.--.+|. + +.|.++.|....++.
T Consensus 15 ~~~i~ikV~~--~~g~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~dl~me 79 (93)
T 2d07_B 15 NDHINLKVAG--QDGSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 79 (93)
T ss_dssp CCEEEEEEEC--TTSCEE----EEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCC
T ss_pred CCeEEEEEEC--CCCCEE----EEEEccCCHHHHHHHHHHHHhCCCccceEEEEC------C---EEcCCCCCHHHcCCC
Confidence 3457777774 333343 677899999999999999999999874333332 2 457788999999999
Q ss_pred CCCEEEEE
Q 001393 767 DGDIICFQ 774 (1087)
Q Consensus 767 ~GDIi~fQ 774 (1087)
+||+|=+-
T Consensus 80 dgD~Idv~ 87 (93)
T 2d07_B 80 DEDTIDVF 87 (93)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99988554
No 44
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=84.06 E-value=1.1 Score=38.73 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=53.4
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..|.|++|--|-. +.+ ++-|.++.+++.|+...+++.|++++.--.+|. + +.|.++.|....++.+
T Consensus 6 ~~i~ikV~~~~g~-~~i----~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~med 71 (79)
T 3a4r_A 6 QELRLRVQGKEKH-QML----EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD------G---TKLSGKELPADLGLES 71 (79)
T ss_dssp CCEEEEEECSSTT-CEE----EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET------T---EECCSCCCHHHHTCCT
T ss_pred CEEEEEEEeCCCC-EEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 4466666654432 122 466899999999999999999999885434442 2 4678889999999999
Q ss_pred CCEEEE
Q 001393 768 GDIICF 773 (1087)
Q Consensus 768 GDIi~f 773 (1087)
||+|=+
T Consensus 72 gD~Idv 77 (79)
T 3a4r_A 72 GDLIEV 77 (79)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 999854
No 45
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=83.86 E-value=1.2 Score=39.71 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||+.
T Consensus 34 ~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif 66 (93)
T 3plu_A 34 VRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK 66 (93)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe
Confidence 467888999999999999999999999999976
No 46
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=83.56 E-value=2.3 Score=44.32 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=49.9
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCC-ceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEe
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 671 (1087)
..+..+.+..|+.+|++.+++.++++.+ .+|||.+....+.. .|. +.+.||+++. -...-.|.+|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~-----~L~--~~~~tl~~~~------l~~~Q~illE~ 207 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFE-----PLN--KPDSTIQDAG------LYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEE-----ECC--CTTSBHHHHT------CCTTCEEEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCee-----ecC--CCCCCHHHhC------CCCCCEEEEEE
Confidence 3567889999999999999999999997 69999986533221 232 2357898864 22356788998
Q ss_pred ec
Q 001393 672 EF 673 (1087)
Q Consensus 672 ~~ 673 (1087)
..
T Consensus 208 r~ 209 (217)
T 4a3p_A 208 KN 209 (217)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 47
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=83.41 E-value=1.8 Score=38.63 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=53.4
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..|-||+|...-.+. .+-|..+++|.+|...|.++.|+|++.....|. + ..++...|+...+|++
T Consensus 20 ~mIqI~Vk~~~Gkk~------~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~------G---k~LkD~~TL~dY~I~d 84 (93)
T 3plu_A 20 HMIEVVVNDRLGKKV------RVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG------G---SVLKDHISLEDYEVHD 84 (93)
T ss_dssp CEEEEEEECTTSCEE------EEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBTGGGTCCT
T ss_pred ceEEEEEECCCCCEE------EEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC------C---EEccCcCCHHHcCCCC
Confidence 357888886543322 245788999999999999999999987655542 2 2477889999999999
Q ss_pred CCEEE
Q 001393 768 GDIIC 772 (1087)
Q Consensus 768 GDIi~ 772 (1087)
|+.|-
T Consensus 85 gstLh 89 (93)
T 3plu_A 85 QTNLE 89 (93)
T ss_dssp TCEEE
T ss_pred CCEEE
Confidence 99873
No 48
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=83.29 E-value=3 Score=36.83 Aligned_cols=74 Identities=12% Similarity=0.276 Sum_probs=57.5
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
....+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++.+.++....|
T Consensus 14 ~~~~m~i~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi 78 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGT--HI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNI 78 (91)
T ss_dssp CCCSEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBTGGGTC
T ss_pred CCCeEEEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC------C---eECCCcCcHHHCCC
Confidence 345689999987643 22 356889999999999999999999987766662 2 23667889999999
Q ss_pred CCCCEEEEE
Q 001393 766 EDGDIICFQ 774 (1087)
Q Consensus 766 ~~GDIi~fQ 774 (1087)
.+|+.|..-
T Consensus 79 ~~g~~i~l~ 87 (91)
T 3v6c_B 79 QKESTLHLV 87 (91)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999988653
No 49
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.05 E-value=2.6 Score=38.50 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
...|.|++|--|- ..+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....++.
T Consensus 22 ~~~I~IkVk~~~g--~~i----~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~me 86 (104)
T 1wz0_A 22 NDHINLKVAGQDG--SVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 86 (104)
T ss_dssp SCCEEEEEECSSS--CEE----EEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS------S---SBCCTTSCTTTTTCC
T ss_pred CCeEEEEEECCCC--CEE----EEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 4567888875443 333 677999999999999999999999875433432 2 467888999999999
Q ss_pred CCCEEEEEe
Q 001393 767 DGDIICFQK 775 (1087)
Q Consensus 767 ~GDIi~fQ~ 775 (1087)
+||+|-+-.
T Consensus 87 dgD~Idv~~ 95 (104)
T 1wz0_A 87 DEDTIDVFQ 95 (104)
T ss_dssp TTEEEEECC
T ss_pred CCCEEEEEE
Confidence 999886643
No 50
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=82.87 E-value=12 Score=33.48 Aligned_cols=81 Identities=10% Similarity=-0.071 Sum_probs=59.9
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecc-cCcCCcccccc
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH-LDKRTSFRLSQ 764 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~-i~~~~t~~~~e 764 (1087)
..+.|-|+++.-....+. -.+-++.+.+|++|...|.++.|+|++..-.+|.. ++..+.. .+...|+....
T Consensus 12 ~~~~v~l~It~s~~~~~~----~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~----~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVA----FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK----GDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCCEEEEEEEESSCSCEE----EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE----TTEEEEECCCTTSBHHHHC
T ss_pred CCCeEEEEEEECCCCceE----EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec----CCcccceeCCCCCCHhHCC
Confidence 456788999873332222 34568899999999999999999999988777764 1112223 47788999999
Q ss_pred CCCCCEEEEE
Q 001393 765 IEDGDIICFQ 774 (1087)
Q Consensus 765 l~~GDIi~fQ 774 (1087)
|++|+.|...
T Consensus 84 i~~gstihlv 93 (95)
T 2kjr_A 84 NSDGLRLHVV 93 (95)
T ss_dssp CSSSCEEEEE
T ss_pred cCCCCEEEEE
Confidence 9999998764
No 51
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=82.34 E-value=1.6 Score=37.26 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=53.7
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
+-||+|.-+-. ++ .+-|..+.+|.+|...+.+..|+|++..-.+|. + ..++.+.|+....+.+||
T Consensus 4 m~i~vk~~~g~--~~----~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~------G---~~L~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 4 IKLKVIGQDSS--EI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGMEEED 68 (79)
T ss_dssp EEEEEECTTCC--EE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTCCTTE
T ss_pred EEEEEECCCCC--EE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEeCCCCCHHHcCCCCCC
Confidence 56777754432 32 355789999999999999999999886555552 2 356678899999999999
Q ss_pred EEEEEe
Q 001393 770 IICFQK 775 (1087)
Q Consensus 770 Ii~fQ~ 775 (1087)
.|..-.
T Consensus 69 ~i~l~~ 74 (79)
T 2uyz_B 69 VIEVYQ 74 (79)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987654
No 52
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=81.66 E-value=1.7 Score=38.98 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=31.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~ 628 (1087)
.++++..++|+.+|+++|.+..|+|++++||....
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK 64 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 46789999999999999999999999999998753
No 53
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=81.52 E-value=2 Score=38.61 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
....+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...|+....|
T Consensus 18 ~~~~m~I~Vk~~~g~--~~----~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~------G---k~L~d~~tl~dy~i 82 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSS--EI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGM 82 (97)
T ss_dssp -CCEEEEEEECTTCC--EE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTC
T ss_pred CCCcEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------C---eEcCCCCCHHHCCC
Confidence 345588888865543 32 355889999999999999999999886655553 2 34667889999999
Q ss_pred CCCCEEEEEe
Q 001393 766 EDGDIICFQK 775 (1087)
Q Consensus 766 ~~GDIi~fQ~ 775 (1087)
++||+|..-.
T Consensus 83 ~~g~~I~l~~ 92 (97)
T 1wyw_B 83 EEEDVIEVYQ 92 (97)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999987643
No 54
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.14 E-value=5.1 Score=35.82 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=51.3
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
.-++.+.+|++|...|.++.|.|+...-..|..-. .|...++.-+...++...-+++||.|.++..
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 45789999999999999999999987765555311 2433334557788999999999999998864
No 55
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=80.80 E-value=2.5 Score=36.47 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=55.5
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
+-||+|..+-.+ + .+-|+.+.+|.+|...|.+..|+|++..-.+|.- ..++.+.|+....|.+|+
T Consensus 4 m~i~vk~~~g~~--~----~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g---------~~L~d~~tL~~~~i~~~~ 68 (85)
T 3n3k_B 4 MRIVVKTLMGRT--I----ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIHNHS 68 (85)
T ss_dssp CEEEEECGGGCE--E----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB---------EECCTTCBTTTTTCCTTC
T ss_pred EEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC---------eECCCCCCHHHCCCCCCC
Confidence 578888775432 1 2457889999999999999999999877666631 245677899999999999
Q ss_pred EEEEEeC
Q 001393 770 IICFQKS 776 (1087)
Q Consensus 770 Ii~fQ~~ 776 (1087)
.|..-..
T Consensus 69 ~i~l~~r 75 (85)
T 3n3k_B 69 ALYLLLK 75 (85)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9877644
No 56
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=80.65 E-value=1.2 Score=39.29 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~ 627 (1087)
...|+..++|+.+|+++|.+..|+|++++||+..
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 4579999999999999999999999999999875
No 57
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=80.10 E-value=2.2 Score=38.33 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=56.3
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
....+-||+|..+-.+ + .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++.+.++....|
T Consensus 19 ~~~~m~I~Vk~~~g~~--~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i 83 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKT--I----TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNI 83 (98)
T ss_dssp ---CCEEEEEETTCCE--E----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBSGGGTC
T ss_pred CCCeEEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHCCC
Confidence 3455889999876432 2 345788999999999999999999887766652 2 24667889999999
Q ss_pred CCCCEEEEEe
Q 001393 766 EDGDIICFQK 775 (1087)
Q Consensus 766 ~~GDIi~fQ~ 775 (1087)
.+|+.|..-.
T Consensus 84 ~~g~~i~l~~ 93 (98)
T 4hcn_B 84 QKESTLHLVL 93 (98)
T ss_dssp CTTEEEEEEC
T ss_pred CCCCEEEEEE
Confidence 9999887643
No 58
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=80.01 E-value=4 Score=36.80 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=52.5
Q ss_pred EEEEEeecCCCC-eEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 691 LLFFKLYDPEKG-ELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 691 llFlK~fD~~~q-~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
.|-||.=+.+.. .+ .+.|.++.+++.|+..-+++.|++.++---+|. + +.|.++.|....++.|||
T Consensus 25 ~I~LkV~~~dg~~~v----~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD------G---~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTL----EVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD------G---TKLSGRELPADLGMESGD 91 (97)
T ss_dssp EEEEEEEESSSSCEE----EEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET------T---EECCSCSCHHHHTCCTTE
T ss_pred eEEEEEEcCCCCEEE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEcCCCCCHHHcCCCCCC
Confidence 456666565542 33 367899999999999999999999774333332 2 567888999999999999
Q ss_pred EEEE
Q 001393 770 IICF 773 (1087)
Q Consensus 770 Ii~f 773 (1087)
+|=+
T Consensus 92 ~IDv 95 (97)
T 2jxx_A 92 LIEV 95 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
No 59
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=79.65 E-value=5.3 Score=41.57 Aligned_cols=67 Identities=10% Similarity=0.226 Sum_probs=54.1
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCc-CCccccccCCCCCEEEEEeCC
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDK-RTSFRLSQIEDGDIICFQKSP 777 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~-~~t~~~~el~~GDIi~fQ~~~ 777 (1087)
-.+.+++.++|.+|...+++++++|++++++||-=.. .+.. +.++. ..|+..+.|++|+-|+.+...
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~--~~~~-~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYM--SNTF-EPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEE--TTEE-EECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecC--CCCe-eecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 3566799999999999999999999998898876332 2222 55554 679999999999999999774
No 60
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=79.62 E-value=1.7 Score=38.82 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=49.4
Q ss_pred EeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEE
Q 001393 707 VGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1087)
Q Consensus 707 ~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1087)
.-++-|.++.+.+-|+...+++.|+++++=.-||... .|.+..|-...++.+||||=+
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~---------rI~~~~TP~~L~meD~DiID~ 89 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGET---------ELSPTATPRTLKLGVADIIDC 89 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTE---------ECCTTSCHHHHTCCSSCEEEE
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCc---------CCCCCCCHhHcCCCCCCEEEE
Confidence 4567789999999999999999999999888887653 467788899999999999933
No 61
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=79.48 E-value=3.7 Score=35.33 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=55.6
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1087)
.+-||+|..+-. ++ .+-++.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....|.+|
T Consensus 3 ~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~------g---~~L~d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 3 HMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKW 67 (85)
T ss_dssp CEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTGGGTCCTT
T ss_pred eEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 367888877543 22 246789999999999999999999887665552 2 24567789999999999
Q ss_pred CEEEEEeC
Q 001393 769 DIICFQKS 776 (1087)
Q Consensus 769 DIi~fQ~~ 776 (1087)
+.|..-..
T Consensus 68 ~~l~l~~r 75 (85)
T 3mtn_B 68 STLFLLLR 75 (85)
T ss_dssp CEEEEECC
T ss_pred CEEEEEEE
Confidence 99877543
No 62
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=79.34 E-value=2.2 Score=38.51 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~ 628 (1087)
...+++..++|+.+|+++|.+..|+|++++||....
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 356899999999999999999999999999998753
No 63
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=79.24 E-value=12 Score=33.70 Aligned_cols=82 Identities=10% Similarity=-0.024 Sum_probs=60.0
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecc-cCcCCccccccC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH-LDKRTSFRLSQI 765 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~-i~~~~t~~~~el 765 (1087)
.+.+-|+++.=....+. -.+-++.+.+|++|...|..+.|+|++..-.+|.-- ++. .+.. .+...++....|
T Consensus 12 ~~~v~l~It~s~~~~~~----~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~--~g~-~~~~L~~D~~tL~~Y~I 84 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFS----ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD--SGS-KVAVLSDDSRPLGFFSP 84 (97)
T ss_dssp CCCEEEEEEETTSSCCC----EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS--SSC-BCCCSSGGGSCHHHHCC
T ss_pred CceEEEEEEECCCCceE----EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC--CCc-ccceecCCcCCHHHCCC
Confidence 45688888883332222 236689999999999999999999999887777532 111 1233 477889999999
Q ss_pred CCCCEEEEEe
Q 001393 766 EDGDIICFQK 775 (1087)
Q Consensus 766 ~~GDIi~fQ~ 775 (1087)
++|+.|....
T Consensus 85 ~~g~~Ihlvd 94 (97)
T 2kj6_A 85 FDGFRLHIID 94 (97)
T ss_dssp CSCCEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999987654
No 64
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.20 E-value=6 Score=33.63 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=54.6
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|..+- +.+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+
T Consensus 6 ~~m~i~vk~~~g--~~~----~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------g---k~L~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 6 SGMQLTVKALQG--REC----SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK------G---KALADGKRLSDYSIGP 70 (81)
T ss_dssp SSEEEEEEETTS--CEE----EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET------T---EECCTTSBGGGGTCCS
T ss_pred CcEEEEEEeCCC--CEE----EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------C---eECCCCCcHHHcCCCC
Confidence 347788885543 333 356889999999999999999999987766663 2 2356678999999999
Q ss_pred CCEEEEE
Q 001393 768 GDIICFQ 774 (1087)
Q Consensus 768 GDIi~fQ 774 (1087)
|+.|..-
T Consensus 71 g~~i~l~ 77 (81)
T 2dzi_A 71 NSKLNLV 77 (81)
T ss_dssp SBCCEEE
T ss_pred CCEEEEE
Confidence 9987654
No 65
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=78.07 E-value=4.6 Score=34.36 Aligned_cols=71 Identities=6% Similarity=0.091 Sum_probs=54.4
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1087)
.+-||+|..+-. ++ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++.+.|+....|.+|
T Consensus 4 ~m~i~Vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~ 68 (79)
T 3phx_B 4 PLSILVRNNKGR--SS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPL 68 (79)
T ss_dssp CEEEEEECTTSC--EE----EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTCCTT
T ss_pred CEEEEEEeCCCC--EE----EEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC------C---EECCCCCcHHHCCCCCC
Confidence 367888876543 22 256889999999999999999999887655552 2 24567889999999999
Q ss_pred CEEEEE
Q 001393 769 DIICFQ 774 (1087)
Q Consensus 769 DIi~fQ 774 (1087)
+.|-.-
T Consensus 69 ~~l~l~ 74 (79)
T 3phx_B 69 STVFMN 74 (79)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 998654
No 66
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=77.70 E-value=8.9 Score=32.15 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=52.8
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
+-||+|. +- +. -.+-++.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....+.+|+
T Consensus 5 m~i~vk~-~g--~~----~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------g---k~L~d~~tL~~~~i~~g~ 68 (77)
T 2bwf_A 5 LNIHIKS-GQ--DK----WEVNVAPESTVLQFKEAINKANGIPVANQRLIYS------G---KILKDDQTVESYHIQDGH 68 (77)
T ss_dssp EEEEEEE-TT--EE----EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTC
T ss_pred EEEEEEE-CC--EE----EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC------C---eEcCCCCCHHHcCCCCCC
Confidence 5678887 32 22 2356789999999999999999999886655552 2 235667899999999999
Q ss_pred EEEEEe
Q 001393 770 IICFQK 775 (1087)
Q Consensus 770 Ii~fQ~ 775 (1087)
.|..-.
T Consensus 69 ~i~l~~ 74 (77)
T 2bwf_A 69 SVHLVK 74 (77)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987754
No 67
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=77.57 E-value=3.2 Score=37.11 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=27.1
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~ke 1046 (1087)
+..-.+.|.+.||+..+|+||++++||+...
T Consensus 23 a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~ 53 (94)
T 4efo_A 23 MTAHKIYIHSYNTATIFHELVYKQTKIISSN 53 (94)
T ss_dssp TEEEEEEEETTCBHHHHHHHHHHHHCCCGGG
T ss_pred ceEEEEEeccchHHHHHHHHHHHHhCCCHHH
Confidence 4555699999999999999999999998853
No 68
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=77.43 E-value=6.3 Score=34.28 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=43.3
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhhcccccceeeEeee
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQVCFLSIIFFFL 1085 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~ 1085 (1087)
|..|.+.|.+..|+.++|++|++++|++...- |+ +..+ .-|+|+..+.+.-- .-+.|...+
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---rL--i~~G--k~L~D~~tL~~~~i--~g~~i~lv~ 87 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ---RL--IYQG--RVLQDDKKLQEYNV--GGKVIHLVE 87 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE---EE--EETT--EECCTTSBGGGGTC--TTEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---EE--EECC--EECCCCCcHHHcCC--CCcEEEEEE
Confidence 77888999999999999999999999987543 43 3233 45778766665432 245555444
No 69
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=77.11 E-value=3.5 Score=34.55 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=51.7
Q ss_pred EEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEE
Q 001393 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1087)
Q Consensus 692 lFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1087)
||+|..+-. .+ .+-++.+.+|++|...|.+..|+|++..-.+|. + ..++.+.++....+.+|+.|
T Consensus 3 i~vk~~~g~--~~----~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g---~~L~d~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 3 IFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQRESTL 67 (76)
T ss_dssp EEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTGGGTCCTTCEE
T ss_pred EEEEcCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------C---eECCCCCcHHHcCCCCCCEE
Confidence 566654432 22 345788999999999999999999886666652 2 23566789999999999998
Q ss_pred EEEeC
Q 001393 772 CFQKS 776 (1087)
Q Consensus 772 ~fQ~~ 776 (1087)
..-..
T Consensus 68 ~l~~~ 72 (76)
T 3a9j_A 68 HLVLR 72 (76)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77543
No 70
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=76.96 E-value=4.4 Score=40.94 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=56.7
Q ss_pred CCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCcccccc
Q 001393 685 KSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQ 764 (1087)
Q Consensus 685 ~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~e 764 (1087)
+++..|.|.++ + .... -++-|.++++++.|+...+++.|++.++--.+|. + ..|..+.|....+
T Consensus 53 dp~e~InLKVk--~-dG~e----V~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD------G---qRI~~ddTPeDLd 116 (207)
T 3tix_A 53 KPETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD------G---IEIQADQTPEDLD 116 (207)
T ss_dssp --CCEEEEEEE--C-SSCE----EEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET------T---EECCSSCCTTTTT
T ss_pred CCCCcEEEEEe--c-CCCE----EEEEEccCChHHHHHHHHHHHhCCCcccEEEEEC------C---eecCCCCCHHHcC
Confidence 34667888887 2 3333 3677899999999999999999999865444442 2 4677889999999
Q ss_pred CCCCCEEEEEeC
Q 001393 765 IEDGDIICFQKS 776 (1087)
Q Consensus 765 l~~GDIi~fQ~~ 776 (1087)
+.|||+|=+-..
T Consensus 117 MEDGDtIDV~le 128 (207)
T 3tix_A 117 MEDNDIIEAHRE 128 (207)
T ss_dssp CCTTEEEEECCC
T ss_pred CCCCCEEEEEEe
Confidence 999998865443
No 71
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=76.76 E-value=2.2 Score=36.88 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..++|++++||+.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 356777889999999999999999999999976
No 72
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=76.72 E-value=3.5 Score=34.53 Aligned_cols=69 Identities=13% Similarity=0.273 Sum_probs=51.3
Q ss_pred EEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEE
Q 001393 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1087)
Q Consensus 692 lFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1087)
||+|..+-. ++ .+-++.+.+|++|...|.+..|+|++..-.+|. + ..++.+.++....+.+|+.|
T Consensus 3 i~vk~~~g~--~~----~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g---~~L~d~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 3 IKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSVL 67 (76)
T ss_dssp EEEECTTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBGGGGTCCTTCEE
T ss_pred EEEECCCCC--EE----EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCcHHHcCCCCCCEE
Confidence 566654432 22 345788999999999999999999886655552 2 24567789999999999998
Q ss_pred EEEe
Q 001393 772 CFQK 775 (1087)
Q Consensus 772 ~fQ~ 775 (1087)
..-.
T Consensus 68 ~l~~ 71 (76)
T 1ndd_A 68 HLVL 71 (76)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 73
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=76.72 E-value=6.2 Score=41.47 Aligned_cols=67 Identities=9% Similarity=0.209 Sum_probs=54.0
Q ss_pred eEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccC-cCCccccccCCCCCEEEEEeCC
Q 001393 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLD-KRTSFRLSQIEDGDIICFQKSP 777 (1087)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~-~~~t~~~~el~~GDIi~fQ~~~ 777 (1087)
-.+.+++.++|.+|...+++++++|++++++||-=.. .+.. +.+. .+.|+..+.|++|+-|+.+...
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~--~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYM--SNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSS--SSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecC--CCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 3466799999999999999999999999999986431 1222 4444 5789999999999999999874
No 74
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=76.17 E-value=4.6 Score=33.74 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=36.9
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|.+|.+.+.+..|+.++|++|++++|++.. +.++ +..+ .-|+|+..+.+
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~---~q~L--~~~g--~~L~d~~tL~~ 58 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAG--KQLEDGRTLSD 58 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGG---GEEE--EETT--EECCTTCBTGG
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHH---HeEE--EECC--eECCCCCcHHH
Confidence 788999999999999999999999999853 3444 2233 34677655554
No 75
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=75.97 E-value=3.2 Score=43.74 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=47.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCC-ceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEee
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 672 (1087)
.+.++.|..|+.+|++.+++.++++.+ .+|||.+...++.. .|. +.+.||+++. -...-.|.+|+.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~-----~L~--~~~~tl~d~~------L~~~Q~illE~r 220 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYE-----QLS--KLDNTIQDAG------LYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCE-----ECC--CTTSBTTTTT------CCTTEEEEEEEC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHh-----hhc--CCCCCHHHhC------CCCCCEEEEEEe
Confidence 356788999999999999999999997 69999975433221 222 2345776643 224568899986
Q ss_pred c
Q 001393 673 F 673 (1087)
Q Consensus 673 ~ 673 (1087)
.
T Consensus 221 ~ 221 (231)
T 3jyu_A 221 N 221 (231)
T ss_dssp C
T ss_pred c
Confidence 4
No 76
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=75.90 E-value=2.7 Score=36.23 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..++|+.+|+++|++..++|++++||..
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 457888899999999999999999999999874
No 77
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=75.86 E-value=2.9 Score=35.61 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=30.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+++|..++|+.+|++.+++..|+|++++||..
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 468899999999999999999999999999865
No 78
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.63 E-value=2.2 Score=38.12 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=31.8
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~ 627 (1087)
...+++..++|+.+|+++|++..|+|++++||...
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 35678999999999999999999999999999875
No 79
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=74.71 E-value=3.3 Score=35.28 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 457888899999999999999999999999864
No 80
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=74.65 E-value=4.2 Score=35.62 Aligned_cols=71 Identities=14% Similarity=0.289 Sum_probs=54.5
Q ss_pred EEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCE
Q 001393 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1087)
Q Consensus 691 llFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1087)
-||+|..+-. ++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+.
T Consensus 2 ~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 2 LIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSV 66 (88)
T ss_dssp EEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC------C---eECCCCCcHHHcCCCCCCE
Confidence 4677766533 22 346788999999999999999999987766662 2 2456788999999999999
Q ss_pred EEEEeC
Q 001393 771 ICFQKS 776 (1087)
Q Consensus 771 i~fQ~~ 776 (1087)
|..-..
T Consensus 67 l~l~~r 72 (88)
T 4fbj_B 67 LHLVLA 72 (88)
T ss_dssp EEEECB
T ss_pred EEEEEE
Confidence 887654
No 81
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=74.44 E-value=3.4 Score=36.06 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 23 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 23 FELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 457888899999999999999999999999864
No 82
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=74.24 E-value=3.6 Score=35.92 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|+|++++||..
T Consensus 30 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 30 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 357888999999999999999999999999875
No 83
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.17 E-value=6 Score=34.27 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=56.7
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|..+- +++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+
T Consensus 6 ~~m~i~Vk~~~g--~~~----~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~------G---k~L~d~~tL~~~~i~~ 70 (87)
T 1wh3_A 6 SGIQVFVKNPDG--GSY----AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ------G---QVLQDWLGLGIYGIQD 70 (87)
T ss_dssp SSEEEEEEETTT--EEE----EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET------T---EECCSSSBHHHHTCCT
T ss_pred CCEEEEEEcCCC--CEE----EEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC------C---EEccCCCCHHHCCCCC
Confidence 347888887653 222 356889999999999999999999987766663 2 2456678999999999
Q ss_pred CCEEEEEeC
Q 001393 768 GDIICFQKS 776 (1087)
Q Consensus 768 GDIi~fQ~~ 776 (1087)
|+.|..-..
T Consensus 71 g~~i~l~~~ 79 (87)
T 1wh3_A 71 SDTLILSKK 79 (87)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEe
Confidence 999877654
No 84
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.17 E-value=3.9 Score=37.08 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 41 i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~ 73 (100)
T 1uh6_A 41 VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK 73 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 457888999999999999999999999999974
No 85
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.70 E-value=4 Score=35.45 Aligned_cols=33 Identities=15% Similarity=0.411 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|++++++||..
T Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 20 YAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred EEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 356788899999999999999999999999864
No 86
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.69 E-value=11 Score=34.13 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=57.9
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
...+-||+|..+- + + .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|.
T Consensus 15 ~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gi~ 78 (106)
T 1wx7_A 15 PHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------G---KILKDPDSLAQCGVR 78 (106)
T ss_dssp SSEEEEEEECSSC---E--E--EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET------T---EECCTTSCHHHHTCC
T ss_pred CceEEEEEEeCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHcCCC
Confidence 4558899998642 2 2 567889999999999999999999887666653 2 235667899999999
Q ss_pred CCCEEEEEeC
Q 001393 767 DGDIICFQKS 776 (1087)
Q Consensus 767 ~GDIi~fQ~~ 776 (1087)
+|++|..-..
T Consensus 79 ~g~~i~l~~~ 88 (106)
T 1wx7_A 79 DGLTVHLVIK 88 (106)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988765
No 87
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=73.26 E-value=8.5 Score=33.59 Aligned_cols=73 Identities=5% Similarity=0.072 Sum_probs=55.7
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1087)
.+-||+|..+- +.+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|
T Consensus 4 ~m~I~Vk~~~g--~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~~I~~g 68 (88)
T 2hj8_A 4 PLSILVRNNKG--RSS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPL 68 (88)
T ss_dssp EEEEEEEETTS--CEE----EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS------S---SCCCTTSBHHHHHCSTT
T ss_pred cEEEEEECCCC--CEE----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCC
Confidence 36677776553 222 355789999999999999999999987766652 2 24667889999999999
Q ss_pred CEEEEEeC
Q 001393 769 DIICFQKS 776 (1087)
Q Consensus 769 DIi~fQ~~ 776 (1087)
+.|..-..
T Consensus 69 ~~i~l~~~ 76 (88)
T 2hj8_A 69 STVFMNLR 76 (88)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEE
Confidence 99877655
No 88
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.13 E-value=5.8 Score=35.91 Aligned_cols=70 Identities=10% Similarity=-0.018 Sum_probs=54.2
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|--.- +++. +-|..+++|.+|...|.++-|+|++..-..|. + ..++...|+....|++
T Consensus 27 ~mm~I~VKtl~G--k~i~----lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~------G---k~L~D~~TL~dygI~~ 91 (100)
T 1uh6_A 27 TMIEVVCNDRLG--KKVR----VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW------Y---TIFKDHVSLGDYEIHD 91 (100)
T ss_dssp CEEEEEEECSSS--SCEE----EEEETTSBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCSSCBHHHHTCCT
T ss_pred CeEEEEEECCCC--CEEE----EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCCCCHHHcCCCC
Confidence 348889885543 3433 56889999999999999999999887766654 2 2467788999999999
Q ss_pred CCEEE
Q 001393 768 GDIIC 772 (1087)
Q Consensus 768 GDIi~ 772 (1087)
|+.|.
T Consensus 92 gstlh 96 (100)
T 1uh6_A 92 GMNLE 96 (100)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 99764
No 89
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.98 E-value=8.8 Score=34.01 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=56.8
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
...+-||+|.- .+.+ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.
T Consensus 15 ~~~m~i~Vk~~---g~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~ 78 (96)
T 1wx8_A 15 SRIIRVSVKTP---QDCH----EFFLAENSNVRRFKKQISKYLHCNADRLVLIFT------G---KILRDQDILSQRGIL 78 (96)
T ss_dssp SCEEEEEEECS---SSEE----EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET------T---EECCTTSCHHHHTCC
T ss_pred CCcEEEEEEEC---CeEE----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCcCCHHHCCCC
Confidence 35588999985 3443 456889999999999999999999887766653 2 235667899999999
Q ss_pred CCCEEEEEeC
Q 001393 767 DGDIICFQKS 776 (1087)
Q Consensus 767 ~GDIi~fQ~~ 776 (1087)
+|++|..-..
T Consensus 79 ~g~~i~l~~~ 88 (96)
T 1wx8_A 79 DGSTVHVVVR 88 (96)
T ss_dssp TTEEEECCBC
T ss_pred CCCEEEEEEe
Confidence 9999866443
No 90
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=72.81 E-value=4.2 Score=35.63 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 17 ~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 357888999999999999999999999999863
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.66 E-value=13 Score=34.87 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=57.5
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
...+-||+|.- .+++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.
T Consensus 30 ~~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~dygI~ 93 (125)
T 1j8c_A 30 PKIIKVTVKTP---KEKE----EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA------G---KILKDQDTLIQHGIH 93 (125)
T ss_dssp CCCEEEEEECS---SCEE----EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET------T---EEESTTSCGGGTTCS
T ss_pred CCcEEEEEEeC---CeEE----EEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 34588999986 3332 456889999999999999999999887766663 2 234667899999999
Q ss_pred CCCEEEEEeC
Q 001393 767 DGDIICFQKS 776 (1087)
Q Consensus 767 ~GDIi~fQ~~ 776 (1087)
+|++|..-..
T Consensus 94 ~gstI~lv~~ 103 (125)
T 1j8c_A 94 DGLTVHLVIK 103 (125)
T ss_dssp SSEEEEEEEC
T ss_pred CCCEEEEEec
Confidence 9999887655
No 92
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.65 E-value=3.7 Score=37.20 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
.++.|..++|+.+|+++|++..|+|++++||-
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI 63 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYIKIV 63 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE
Confidence 46788999999999999999999999999984
No 93
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=72.17 E-value=4.2 Score=34.24 Aligned_cols=33 Identities=33% Similarity=0.522 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+.+|++..|++++++||..
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 356788899999999999999999999999864
No 94
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=72.03 E-value=10 Score=32.99 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=38.3
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
|.-|.+.|.+..|+.++|++|++++|++... .|+ +..+ +-|+|+..|.+.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---qrL--i~~G--k~L~d~~tL~~~ 64 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEK---QRL--IYQG--RVLQDDKKLQEY 64 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGG---EEE--EETT--EECCTTSBGGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHH---EEE--EECC--eECCCCCCHHHc
Confidence 7788899999999999999999999998754 343 3333 347777666654
No 95
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=71.98 E-value=4.3 Score=35.54 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.|..++|+.+|+++|++..|++++++||..
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 457888999999999999999999999999865
No 96
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=71.77 E-value=3.4 Score=35.89 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|+|++++||..
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 457888899999999999999999999999875
No 97
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=71.69 E-value=11 Score=33.99 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=55.9
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|.- .+++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....|.+
T Consensus 24 ~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gI~~ 87 (101)
T 2klc_A 24 KIMKVTVKTP---KEKE----EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA------G---KILKDQDTLSQHGIHD 87 (101)
T ss_dssp CCEEEEEECS---SCEE----EEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET------T---EEECTTCCTGGGTCCT
T ss_pred CeEEEEEEeC---CcEE----EEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHcCCCC
Confidence 4588899875 2332 456789999999999999999999887666652 2 2356678999999999
Q ss_pred CCEEEEEeC
Q 001393 768 GDIICFQKS 776 (1087)
Q Consensus 768 GDIi~fQ~~ 776 (1087)
|+.|..-..
T Consensus 88 g~~I~l~~~ 96 (101)
T 2klc_A 88 GLTVHLVIK 96 (101)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 999877544
No 98
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=71.40 E-value=9.8 Score=33.29 Aligned_cols=62 Identities=8% Similarity=-0.054 Sum_probs=48.3
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCc-eecccCcCCccccccCCCCCEEEEE
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCV-MCEHLDKRTSFRLSQIEDGDIICFQ 774 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~-~ie~i~~~~t~~~~el~~GDIi~fQ 774 (1087)
.-++.+.+|++|...|..+.|+|++..-.+|..- .+. ....++...++....+++|..|-.-
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~---~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDD---RGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECT---TSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecC---CCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 5578999999999999999999999886666421 111 2245777899999999999999443
No 99
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=71.28 E-value=4 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..++|+.+|+++|++..|++++++||..
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 30 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 356788899999999999999999999999875
No 100
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=71.17 E-value=4.5 Score=36.05 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=29.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 457888899999999999999999999999963
No 101
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.13 E-value=4.7 Score=34.31 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|++++++||..
T Consensus 20 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 20 CSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp EEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 357888899999999999999999999999864
No 102
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=71.08 E-value=5.7 Score=34.76 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=52.4
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
+-+|+|..+-.+- .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++.+.|+....+.+|+
T Consensus 10 ~~i~v~~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~ 74 (88)
T 1sif_A 10 LQLFIKTLTGKTF------TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 74 (88)
T ss_dssp CEEEEEETTSCEE------EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBSGGGTCCTTC
T ss_pred eEEEEEeCCCCEE------EEEECCCChHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCcHHHcCCCCCC
Confidence 3456665554321 244788999999999999999999887766663 2 235667899999999999
Q ss_pred EEEEEe
Q 001393 770 IICFQK 775 (1087)
Q Consensus 770 Ii~fQ~ 775 (1087)
.|..-.
T Consensus 75 ~i~l~~ 80 (88)
T 1sif_A 75 TLHLVL 80 (88)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 987654
No 103
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=71.07 E-value=4.6 Score=34.22 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=29.1
Q ss_pred EEE-EeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFR-VQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
++. +..++|+.+|+++|++..|+|++++||..
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 567 88889999999999999999999999864
No 104
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=71.02 E-value=3.8 Score=34.30 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|+|++++||..
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 356778889999999999999999999999864
No 105
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=70.84 E-value=10 Score=33.04 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=46.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLE 670 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 670 (1087)
...+|+++..++.+|++.|++.++++++.+.|+.-....+.-. .+.+ ..|+.+.+.++ +..+.||++
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v----i~~d----~dl~~aw~~~~---n~~LtL~C~ 81 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV----PLSE----DSMKDAWGQVK---NYCLTLWCE 81 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE----ECCT----TTHHHHHTTCB---TTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee----ccCh----HHHHHHHHhcc---CCcEEEEEe
Confidence 4568999999999999999999999999999876443222211 2222 24666664332 345888886
No 106
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=70.73 E-value=3.5 Score=36.20 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 356778889999999999999999999999865
No 107
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=70.41 E-value=3.6 Score=36.12 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|+|++++||..
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 456788889999999999999999999999864
No 108
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=70.36 E-value=5.1 Score=37.63 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=32.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~ 628 (1087)
...+++..++|+.+|+++|++..|+|++++||....
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 356899999999999999999999999999997753
No 109
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=70.35 E-value=12 Score=33.68 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
....+-||+|.-+- + + .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|
T Consensus 19 ~~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~ygI 82 (100)
T 1yqb_A 19 SPHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------G---KILKDPDSLAQCGV 82 (100)
T ss_dssp CTTEEEEEEECSSC---E--E--EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBHHHHTC
T ss_pred CCCeEEEEEEcCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHCCC
Confidence 34568899998643 2 2 567889999999999999999999887666652 2 23566789999999
Q ss_pred CCCCEEEEEeC
Q 001393 766 EDGDIICFQKS 776 (1087)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1087)
.+|+.|..-..
T Consensus 83 ~~gstI~l~~r 93 (100)
T 1yqb_A 83 RDGLTVHLVIK 93 (100)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999887655
No 110
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=70.34 E-value=4.9 Score=35.02 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=29.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
..+.+..++|+.+|+++|++..|+|++++||.
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 55 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI 55 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEE
Confidence 35678889999999999999999999999986
No 111
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=70.28 E-value=8.6 Score=39.33 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCcccccc
Q 001393 685 KSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQ 764 (1087)
Q Consensus 685 ~~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~e 764 (1087)
+++..|.|.++ + .... -++-|.++++++.|+...+++.|+|.+.--.+|. + ..|..+.|....+
T Consensus 25 ~~~~~I~LkV~--~-~g~~----v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd------G---~rI~~~~TP~dL~ 88 (200)
T 3pge_A 25 KPETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLD 88 (200)
T ss_dssp CCCCCEEEEEE--C-SSCE----EEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET------T---EECCTTCCTTTTT
T ss_pred CCCCeEEEEEe--c-CCCE----EEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC------C---EEcCCCCCHHHcC
Confidence 34677888887 3 3333 4677899999999999999999998765444442 2 4678899999999
Q ss_pred CCCCCEE-EEEeC
Q 001393 765 IEDGDII-CFQKS 776 (1087)
Q Consensus 765 l~~GDIi-~fQ~~ 776 (1087)
+.+||+| +|+..
T Consensus 89 MEdgD~Idv~~~q 101 (200)
T 3pge_A 89 MEDNDIIEAHREQ 101 (200)
T ss_dssp CCTTEEEEEEECC
T ss_pred CCCCCEEEEEecc
Confidence 9999966 55544
No 112
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=70.08 E-value=12 Score=31.52 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCeEEEEeEEE-EcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLF-LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~-v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1087)
+-||+|.-+-. ++ -.+- |+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+|
T Consensus 3 m~i~Vk~~~g~--~~---~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~------g---~~L~d~~tL~~~~i~~g 68 (78)
T 2faz_A 3 MWIQVRTMDGR--QT---HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR------G---KQMEDGHTLFDYEVRLN 68 (78)
T ss_dssp EEEEEEETTSS--CE---EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTTTTTCCTT
T ss_pred EEEEEEECCCC--EE---EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 45677665432 21 1244 788999999999999999999887766652 2 24567789999999999
Q ss_pred CEEEEEe
Q 001393 769 DIICFQK 775 (1087)
Q Consensus 769 DIi~fQ~ 775 (1087)
+.|..-.
T Consensus 69 ~~i~l~~ 75 (78)
T 2faz_A 69 DTIQLLV 75 (78)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9887643
No 113
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.06 E-value=9.5 Score=34.67 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=58.4
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
....+-||+|..+-. .+ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|
T Consensus 20 ~~~~m~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI 84 (106)
T 1ttn_A 20 SGYECQLRLRLSTGK--DL----KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS------G---RPLTDKMKFEELKI 84 (106)
T ss_dssp -CCSEEEEEEETTTE--EE----EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET------T---EECCTTSHHHHCCC
T ss_pred CCCeEEEEEEcCCCC--EE----EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC------C---EECCCCCcHHHcCC
Confidence 345588999986542 22 256889999999999999999999987766662 2 24567889999999
Q ss_pred CCCCEEEEEeC
Q 001393 766 EDGDIICFQKS 776 (1087)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1087)
.+|+.|..-..
T Consensus 85 ~~g~ti~lv~~ 95 (106)
T 1ttn_A 85 PKDYVVQVIVS 95 (106)
T ss_dssp SSSCEEEEECC
T ss_pred CCCCEEEEEEe
Confidence 99999887654
No 114
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=69.93 E-value=6.3 Score=34.96 Aligned_cols=71 Identities=11% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|. .+.+ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++.+.|+....|.+
T Consensus 18 ~~m~I~Vk~----g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~y~I~~ 80 (93)
T 2l7r_A 18 GSMQLFVRA----QELH----TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA------G---APLEDEATLGQCGVEA 80 (93)
T ss_dssp --CEEEEES----SSEE----EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET------T---EECCTTSBHHHHTCCS
T ss_pred CcEEEEEEC----CCEE----EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC------C---EECCCCCcHHHCCCCC
Confidence 347888886 2333 356788999999999999999999887766653 2 2356788999999999
Q ss_pred CCEEEEEe
Q 001393 768 GDIICFQK 775 (1087)
Q Consensus 768 GDIi~fQ~ 775 (1087)
|+.|..-.
T Consensus 81 gstI~lv~ 88 (93)
T 2l7r_A 81 LTTLEVAG 88 (93)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEE
Confidence 99987643
No 115
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=69.82 E-value=13 Score=34.05 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=56.6
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|..+- +.+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+
T Consensus 34 ~~m~I~Vk~~~g--~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gI~~ 98 (111)
T 2ojr_A 34 LAMQIFVKTLTG--KTI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 98 (111)
T ss_dssp SCEEEEEECSSS--CEE----EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET------T---EECCSSCBTTTTTCCT
T ss_pred CeEEEEEEcCCC--CEE----EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC------C---EECCCCCcHHHcCCCC
Confidence 458899996543 232 356889999999999999999999987766662 2 2356688999999999
Q ss_pred CCEEEEEeC
Q 001393 768 GDIICFQKS 776 (1087)
Q Consensus 768 GDIi~fQ~~ 776 (1087)
|+.|..-..
T Consensus 99 gs~I~l~~r 107 (111)
T 2ojr_A 99 ESTLHLVLR 107 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998876543
No 116
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=69.69 E-value=5 Score=34.91 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=37.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|-.|.+.|.+..|+.++|++|+++.|++.. +.|+ +..+++ .|+|+..|.+
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~QrL--i~~Gk~-lL~D~~tL~~ 69 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVS---KQTL--IVDGIV-ILREDLTVEQ 69 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGG---GEEE--EETTEE-CCCSSSBHHH
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChH---HEEE--EECCEE-ecCCcCCHHH
Confidence 889999999999999999999999999853 3443 323432 2677766654
No 117
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=69.30 E-value=4.9 Score=35.98 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=30.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+++|..++|+.+|++.|++..|++++++||..
T Consensus 34 ~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 467899999999999999999999999999865
No 118
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.88 E-value=15 Score=31.89 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=56.1
Q ss_pred CcEEEEEEeecCCCCeEEEEeEE-EEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRL-FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~-~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
..+-||+|..+-. +++ .+ -|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....|.
T Consensus 6 ~~m~i~Vk~~~g~-~~~----~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------g---k~L~d~~tL~~~~i~ 71 (89)
T 1wy8_A 6 SGMWIQVRTIDGS-KTC----TIEDVSRKATIEELRERVWALFDVRPECQRLFYR------G---KQLENGYTLFDYDVG 71 (89)
T ss_dssp SCEEEEEEETTCS-CEE----EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET------T---EECCSSSBHHHHTCC
T ss_pred CcEEEEEEECCCC-ceE----EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---eECCCCCCHHHCCCC
Confidence 4477888876531 122 34 3889999999999999999999987766663 2 235677899999999
Q ss_pred CCCEEEEEeC
Q 001393 767 DGDIICFQKS 776 (1087)
Q Consensus 767 ~GDIi~fQ~~ 776 (1087)
+|+.|..-..
T Consensus 72 ~g~~i~l~~~ 81 (89)
T 1wy8_A 72 LNDIIQLLVR 81 (89)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998876544
No 119
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.81 E-value=4.4 Score=36.65 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..++.|..++|+.+|+++|++..|++++++||..
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 3457888899999999999999999999999974
No 120
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=68.66 E-value=5.2 Score=36.51 Aligned_cols=71 Identities=27% Similarity=0.336 Sum_probs=54.1
Q ss_pred EEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCE
Q 001393 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1087)
Q Consensus 691 llFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1087)
-||+|..+..+ + .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|.+|+.
T Consensus 3 ~I~Vk~~~g~~--~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 3 SLTFKNFKKEK--V----PLDLEPSNTILETKTKLAQSISCEESQIKLIYS------G---KVLQDSKTVSECGLKDGDQ 67 (106)
T ss_dssp CEEEECTTCCE--E----EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET------T---EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------C---EECCCcCCHHHcCCCCCCE
Confidence 46777655432 1 235788999999999999999999887766652 2 2366788999999999999
Q ss_pred EEEEeC
Q 001393 771 ICFQKS 776 (1087)
Q Consensus 771 i~fQ~~ 776 (1087)
|..-..
T Consensus 68 i~lv~~ 73 (106)
T 3m62_B 68 VVFMVS 73 (106)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 988765
No 121
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.59 E-value=16 Score=32.87 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred EEEEEEeecC--CCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCc-CCccccccCC
Q 001393 690 ILLFFKLYDP--EKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDK-RTSFRLSQIE 766 (1087)
Q Consensus 690 illFlK~fD~--~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~-~~t~~~~el~ 766 (1087)
+-|++|.-.- ..+.+ .+-|+.+.+|.+|...|.+..|+|++..-.+|.- ..++. ..|+....|.
T Consensus 8 m~I~Vk~~~~~~~~~~~----~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~g---------k~L~D~~~tL~~ygI~ 74 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTF----SLQVNPDFELSNFRVLCELESGVPAEEAQIVYME---------QLLTDDHCSLGSYGLK 74 (102)
T ss_dssp EEEEEEECCCCCCCCEE----EEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETT---------EEECCSSSBHHHHTCC
T ss_pred EEEEEEECCCCcCceEE----EEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECC---------EECCCCcccHHHCCCC
Confidence 5667766422 11222 2568899999999999999999999877666632 12444 4689999999
Q ss_pred CCCEEEEEeCC
Q 001393 767 DGDIICFQKSP 777 (1087)
Q Consensus 767 ~GDIi~fQ~~~ 777 (1087)
+|+.|.+-...
T Consensus 75 ~g~~l~l~~~~ 85 (102)
T 1v5o_A 75 DGDMVVLLQKD 85 (102)
T ss_dssp TTEEEEECBCC
T ss_pred CCCEEEEEECC
Confidence 99999887663
No 122
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=68.25 E-value=5.9 Score=34.09 Aligned_cols=34 Identities=6% Similarity=0.225 Sum_probs=31.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...++|.+++++..|++..++..|++++++||+.
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999986
No 123
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=68.18 E-value=5.8 Score=36.98 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=29.2
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+.+..++|+.+++.+|+...|+|++++||+.
T Consensus 15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~ 46 (118)
T 4ajy_B 15 FTDAKESSTVFELKRIVEGILKRPPDEQRLYK 46 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe
Confidence 45788899999999999999999999999984
No 124
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=68.15 E-value=4.4 Score=35.92 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|++.|++..|++++++||..
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 356788889999999999999999999999875
No 125
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=68.08 E-value=4.2 Score=36.10 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=29.2
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 356777889999999999999999999999864
No 126
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=68.03 E-value=5.8 Score=35.77 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.2
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+.+..++|+.+|+++|++..|++++++||..
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 57888899999999999999999999999864
No 127
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=67.68 E-value=5.4 Score=36.71 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..++|+.+|+.+|++..|+|++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 457888999999999999999999999999974
No 128
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=67.62 E-value=7.6 Score=34.62 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=52.7
Q ss_pred EEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEE
Q 001393 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1087)
Q Consensus 692 lFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1087)
||+|..+-. ++ .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++.+.++....+.+|+.|
T Consensus 3 I~Vk~~~g~--~~----~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 3 IFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTCEE
T ss_pred EEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCCCEE
Confidence 566654432 22 345788999999999999999999887666652 2 23566789999999999998
Q ss_pred EEEeCC
Q 001393 772 CFQKSP 777 (1087)
Q Consensus 772 ~fQ~~~ 777 (1087)
..-...
T Consensus 68 ~l~~~~ 73 (98)
T 1yx5_B 68 HLVLRL 73 (98)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 876553
No 129
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=67.12 E-value=4.5 Score=36.28 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..++|..++|+.+|+++|++..|++++++||..
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 356777889999999999999999999999874
No 130
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=66.37 E-value=14 Score=31.71 Aligned_cols=73 Identities=10% Similarity=0.211 Sum_probs=55.1
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHh---cCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQM---AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~---~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
.+-||+|..+-. .+ .+-|+.+.+|.+|...|.+. .|+|++..-.+|. + ..++.+.++....+
T Consensus 5 ~m~i~vk~~~g~--~~----~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i 69 (85)
T 2wyq_A 5 AVTITLKTLQQQ--TF----KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA------G---KILSDDVPIRDYRI 69 (85)
T ss_dssp CEEEEEEETTSC--EE----EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET------T---EECCTTSBGGGGCC
T ss_pred eEEEEEEECCCC--EE----EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC------C---EECcCCCCHHHcCC
Confidence 367788876542 22 35678999999999999997 7899887666652 2 24566789999999
Q ss_pred CCCCEEEEEeC
Q 001393 766 EDGDIICFQKS 776 (1087)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1087)
.+|+.|.+-..
T Consensus 70 ~~g~~i~l~~~ 80 (85)
T 2wyq_A 70 DEKNFVVVMVT 80 (85)
T ss_dssp CTTSEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999988654
No 131
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.26 E-value=6.9 Score=34.09 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=29.2
Q ss_pred eEE-EEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSF-RVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++ .+..++|+.+|+++|++..|++++++||..
T Consensus 21 ~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 21 CTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 356 478889999999999999999999999875
No 132
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=65.92 E-value=7.2 Score=32.81 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.5
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...++|.+++++..+++..++..|++++++||+.
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 3578999999999999999999999999999986
No 133
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.77 E-value=5 Score=35.90 Aligned_cols=36 Identities=6% Similarity=0.074 Sum_probs=32.5
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEe
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~ 628 (1087)
....++++++|+.+|+.+|++.+|+|+..+||....
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 456799999999999999999999999999998764
No 134
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=65.70 E-value=8.6 Score=33.97 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=54.5
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
+-||+|..+-. .+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+
T Consensus 2 m~i~vk~~~g~--~~----~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~~ 66 (96)
T 3k9o_B 2 MQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 66 (96)
T ss_dssp CEEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTC
T ss_pred cEEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCCC
Confidence 35777776532 22 246788999999999999999999887655552 2 246677899999999999
Q ss_pred EEEEEeC
Q 001393 770 IICFQKS 776 (1087)
Q Consensus 770 Ii~fQ~~ 776 (1087)
.|..-..
T Consensus 67 ~i~l~~r 73 (96)
T 3k9o_B 67 TLHLVLR 73 (96)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 8887654
No 135
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.83 E-value=4.4 Score=36.20 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
.+.+..++|+.+|+++|++..|++++++||.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 4678888999999999999999999999986
No 136
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.79 E-value=5.7 Score=35.30 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..++|+.+|+++|++..|++++++||..
T Consensus 29 ~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 29 HEFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 356788899999999999999999999999864
No 137
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=64.75 E-value=26 Score=32.64 Aligned_cols=81 Identities=14% Similarity=-0.014 Sum_probs=58.2
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1087)
.|-|+++.=. .. ....+-++.+.+|++|...|.++.|+|++..-..|..-. +..++...+...++....|++|
T Consensus 6 ~v~l~V~~~~---~~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~--~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 6 VYDLEITTNA---TD--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGD--DQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEEEESS---CC--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSS--SSEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEEEECC---CC--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCC--CccccccCCCcCCHHHCCCCCC
Confidence 4667777621 11 234567889999999999999999999998877775421 1112123467889999999999
Q ss_pred CEEEEEeC
Q 001393 769 DIICFQKS 776 (1087)
Q Consensus 769 DIi~fQ~~ 776 (1087)
+.|..-..
T Consensus 79 ~~ihvvd~ 86 (122)
T 1t0y_A 79 YRIHAVDV 86 (122)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988764
No 138
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=64.64 E-value=6.9 Score=35.32 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|++++++||..
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 356788889999999999999999999999864
No 139
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=63.85 E-value=44 Score=30.40 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=37.9
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
+.++-+.|.+..|..++|++|+++.|++...- | ++..++ -++|+..|.+
T Consensus 36 ~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q---R--li~ggk--ll~D~~TL~~ 84 (105)
T 4dbg_A 36 TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ---Q--WVIGQR--LARDQETLHS 84 (105)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---E--EEETTE--EECTTCBTGG
T ss_pred CceEEEEECCcChHHHHHHHHHHHhCCCHHHE---E--EeccCe--EccCcCcHHH
Confidence 78999999999999999999999999998654 3 343444 3556655554
No 140
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.79 E-value=6.3 Score=35.69 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
.++.|..++|+.+|+++|.+..|+|++++||-
T Consensus 21 ~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi 52 (100)
T 2dzm_A 21 VDVVLEDTCTVGEIKQILENELQIPVSKMLLK 52 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhHeEEE
Confidence 45788889999999999999999999999983
No 141
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=63.63 E-value=9.5 Score=35.26 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=53.1
Q ss_pred EEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCE
Q 001393 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1087)
Q Consensus 691 llFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1087)
=||+|..+-..- .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+.
T Consensus 11 ~i~vk~l~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI~~gst 75 (114)
T 2kdi_A 11 QIFAKTLTGKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA------G---KQLEDGRTLSDYNIQREST 75 (114)
T ss_dssp EEEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTTTTTCCSSCE
T ss_pred EEEEEeCCCcEE------EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCcHHHCCCCCCCE
Confidence 455555554221 244778899999999999999999887766653 2 2356678999999999999
Q ss_pred EEEEeCC
Q 001393 771 ICFQKSP 777 (1087)
Q Consensus 771 i~fQ~~~ 777 (1087)
|..-...
T Consensus 76 I~l~~~~ 82 (114)
T 2kdi_A 76 LHLVLRL 82 (114)
T ss_dssp EEEEECC
T ss_pred EEEEEEc
Confidence 8776553
No 142
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.63 E-value=8.5 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.9
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+++..++|+.+|+++|++..|++++++||..
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 56788889999999999999999999999854
No 143
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=63.51 E-value=11 Score=32.72 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=46.0
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEe
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~ 775 (1087)
+-++.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....|.+|+.|..-.
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK------G---KVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCEEEET------T---EECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---eECCCcCCHHHCCCCCCCEEEEEE
Confidence 45788999999999999999999887666652 2 245677899999999999987653
No 144
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=63.24 E-value=8.1 Score=35.71 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.1
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..++.+..++|+.+|+++|++..|+|++++||..
T Consensus 21 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 21 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 3467788889999999999999999999999864
No 145
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=63.17 E-value=6.3 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.2
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+.+..++|+.+|+++|++..|++++++||..
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 356777889999999999999999999999864
No 146
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=63.09 E-value=9.6 Score=33.79 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.5
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...|+|.+++++..|++..++..|++++++||+.
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F 50 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 50 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999976
No 147
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=62.79 E-value=13 Score=33.98 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=56.3
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|..+-. ++ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|.+
T Consensus 34 ~~m~I~Vk~~~G~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~ 98 (111)
T 3vdz_A 34 LAMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 98 (111)
T ss_dssp GCEEEEEECSSSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTTTTTCCT
T ss_pred ccEEEEEEeCCCC--EE----EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC------C---EECCCCCcHHHCCCCC
Confidence 3488999987643 22 256889999999999999999999887665652 2 2466778999999999
Q ss_pred CCEEEEEe
Q 001393 768 GDIICFQK 775 (1087)
Q Consensus 768 GDIi~fQ~ 775 (1087)
|+.|..-.
T Consensus 99 gs~I~l~~ 106 (111)
T 3vdz_A 99 ESTLHLVL 106 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99887643
No 148
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=62.72 E-value=2.6 Score=39.91 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=26.7
Q ss_pred cccccccCCccccchhHHHHHhcC-hhHHHHHccCC
Q 001393 195 GYVGLKNQGATCYMNSLLQTLYHI-PYFRKAVYHMP 229 (1087)
Q Consensus 195 g~~GL~N~GnTCY~NSvLQ~L~~~-p~fr~~l~~~~ 229 (1087)
.+.|+.|.-++|++|++||+.... .+|-+.+|..+
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y~sp 47 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSSP 47 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTCS
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhccCCh
Confidence 468999999999999999987543 45666666533
No 149
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=62.53 E-value=37 Score=31.47 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=50.6
Q ss_pred CceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhccCC-----C-CCccEEEEEEec-----------cEEEEec
Q 001393 899 LKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELS-----H-PNAELRLLEVFY-----------HKIYKIF 961 (1087)
Q Consensus 899 ~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~-----~-~~~~lrl~~v~~-----------~k~~~~~ 961 (1087)
.+++.|...+-.-..... .|.+++.+|+.||+.++..+++.+ . .....+|.|+.- +-..+++
T Consensus 5 ~~tf~v~V~~v~p~~py~-iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL 83 (117)
T 2c5l_C 5 EESFFVQVHDVSPEQPRT-VIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVL 83 (117)
T ss_dssp CCEEEEEEESCCSSCCEE-EEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEEC
T ss_pred CceEEEEEecCCCCCCeE-EEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEec
Confidence 455666666654333333 789999999999999999999875 4 457899999862 2567777
Q ss_pred CCccccccc
Q 001393 962 APNEKIENI 970 (1087)
Q Consensus 962 ~~~~~i~~i 970 (1087)
.+++.+=.+
T Consensus 84 ~~~E~~l~~ 92 (117)
T 2c5l_C 84 LDQECVFQA 92 (117)
T ss_dssp CTTSBHHHH
T ss_pred CCCCCHHHH
Confidence 777754443
No 150
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=62.32 E-value=8.7 Score=35.85 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=28.9
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
++.+..++|+.+|+.+|+...|+|++++||+
T Consensus 15 ~lev~~sdTV~~lK~kI~~~egIP~~qQrLi 45 (118)
T 2fnj_B 15 FTDAKESSTVFELKRIVEGILKRPPEEQRLY 45 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEeCCcChHHHHHHHHHHHhCCCHHHeEEE
Confidence 4678889999999999999999999999997
No 151
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=62.31 E-value=8 Score=33.65 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=45.8
Q ss_pred EcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeCC
Q 001393 712 LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (1087)
Q Consensus 712 v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (1087)
++.+.+|++|...|.+..|+|++..-.+|- + |....+.-+...++....|.+|+.|.+....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~---~-p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVG---Y-PPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEES---S-CCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeC---C-CCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 567899999999999999999876544542 1 4322121126789999999999999998663
No 152
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=61.71 E-value=9.3 Score=34.09 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...++|.+++++..|++.+++..|++++++||+.
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F 52 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999975
No 153
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=61.29 E-value=9.3 Score=35.06 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..+++..++|+.+|+++|++..|++++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 357888899999999999999999999999864
No 154
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.22 E-value=9.3 Score=33.60 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=27.8
Q ss_pred EEEEecc-----ccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQ-----TSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+.+..+ +|+.+|+++|++..|++++++||..
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~ 56 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF 56 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4566664 8999999999999999999999964
No 155
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=61.11 E-value=20 Score=32.13 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=56.3
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHH-HHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC-
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKL-NQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI- 765 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i-~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el- 765 (1087)
..+-||+|.....+-+ -.+-|+.+.+|.+|...| .+.-|+|++..-.+|. + ..++...++....|
T Consensus 18 ~~m~I~VKtl~g~~~~----i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~------G---k~L~D~~tL~dy~I~ 84 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFS----IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK------G---KVLHDNLFLSDLKVT 84 (98)
T ss_dssp CCEEEEEEECSSSCEE----EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET------T---EEECTTCBGGGSCCB
T ss_pred CCEEEEEEcCCCCEEE----EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC------C---EECcCcCCHHHcCcC
Confidence 4478888887665222 234467999999999999 8888999887766662 2 34667889999999
Q ss_pred CCCCEEEEEe
Q 001393 766 EDGDIICFQK 775 (1087)
Q Consensus 766 ~~GDIi~fQ~ 775 (1087)
++|+.|..=.
T Consensus 85 ~~g~ti~lmv 94 (98)
T 4a20_A 85 PANSTITVMI 94 (98)
T ss_dssp TTBCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999887654
No 156
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=61.05 E-value=10 Score=35.15 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=31.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~ 627 (1087)
..|+|.+++++..|++..++..|++++.+|||.=
T Consensus 53 v~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD 86 (115)
T 3kyd_D 53 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 86 (115)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET
T ss_pred EEEEEccCChHHHHHHHHHHHhCCChhhEEEEEC
Confidence 4789999999999999999999999999999973
No 157
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.01 E-value=7.1 Score=34.90 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=28.6
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
.+.+..++|+.+|+++|++..|++++++||.
T Consensus 21 ~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi 51 (96)
T 1wgg_A 21 GVELNTDEPPMVFKAQLFALTGVQPARQKVM 51 (96)
T ss_dssp EEEEESSSCHHHHHHHHHHHTCCCTTTSCCE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 3678889999999999999999999999987
No 158
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=60.66 E-value=5.1 Score=35.31 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=26.3
Q ss_pred EEeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 597 RVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
.+..++|+.+|+++|++..|++++++||.
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 45667899999999999999999999986
No 159
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=60.45 E-value=5.2 Score=34.59 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=42.8
Q ss_pred EEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceeccc--CcCCccccccCCCCCEEEEE
Q 001393 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHL--DKRTSFRLSQIEDGDIICFQ 774 (1087)
Q Consensus 706 ~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i--~~~~t~~~~el~~GDIi~fQ 774 (1087)
|.-.+-++.++++.+|...|.+.++.+.+..- +|=.- .|. .++ ....++.+..|.+||.|+..
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~-l~~~~--~p~---~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGFS-VYINR--NKT---GEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCC-CCCSC--CGG---GGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcce-EEecC--CCC---CcccCCCCCCHHHcCCCCCCEEEEe
Confidence 34444567889999999999999999865422 22221 242 122 26778888999999999864
No 160
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=60.21 E-value=20 Score=33.80 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=46.6
Q ss_pred EeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEee------------------cCCCce------------ecccCc
Q 001393 707 VGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIK------------------FEPCVM------------CEHLDK 756 (1087)
Q Consensus 707 ~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik------------------~~p~~~------------ie~i~~ 756 (1087)
+-.+.|+.+.+|.+++..||+++|++..++..|--+-- +.|..+ ..-+++
T Consensus 23 ~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~ 102 (128)
T 2kc2_A 23 VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDH 102 (128)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECS
T ss_pred EEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccC
Confidence 35677899999999999999999999776644432210 011111 133556
Q ss_pred CCccccccCCCCCEEEEEe
Q 001393 757 RTSFRLSQIEDGDIICFQK 775 (1087)
Q Consensus 757 ~~t~~~~el~~GDIi~fQ~ 775 (1087)
..|+.+..|..||+|+.-+
T Consensus 103 srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 103 GRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSCHHHHTCCTTSEEEEEE
T ss_pred CCcHHHcCCCCCCEEEEEE
Confidence 7778888888888887654
No 161
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=59.40 E-value=12 Score=33.34 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=31.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
..|+|.+++++..|++..++..|++++++||+.
T Consensus 30 i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 62 (93)
T 2d07_B 30 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62 (93)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 478999999999999999999999999999986
No 162
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=59.24 E-value=12 Score=35.57 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=30.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecc
Q 001393 816 FCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPH 850 (1087)
Q Consensus 816 f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr~~~~ 850 (1087)
-.+.+-++++..++.+.||+.+|+ +|..+|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~-~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGF-PQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCC-CGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCC-CcccEEEEEe
Confidence 356788999999999999999997 6999999985
No 163
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.20 E-value=24 Score=31.23 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=57.1
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceec-ccCcCCccccccCCC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCE-HLDKRTSFRLSQIED 767 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie-~i~~~~t~~~~el~~ 767 (1087)
++-|+++.=.. . ..-.+-++.+.+|.+|...|.++.|+|++..-.+|..- ++..+. .++...++....|++
T Consensus 7 ~v~l~I~~~~~--~---~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~---~g~~~~~l~~D~~tL~~y~i~~ 78 (95)
T 1v6e_A 7 GVMVFISSSLN--S---FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGA---DDKFYSKLDQEDALLGSYPVDD 78 (95)
T ss_dssp CEEEEEEETTS--S---SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECS---SSCEEEECCCSSSBTTSSSCCT
T ss_pred EEEEEEEECCC--C---eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCC---CCccccccCCCcCCHhHCCCCC
Confidence 36777776211 1 22446788999999999999999999999887777642 111222 346788999999999
Q ss_pred CCEEEEEe
Q 001393 768 GDIICFQK 775 (1087)
Q Consensus 768 GDIi~fQ~ 775 (1087)
|+.|..-.
T Consensus 79 g~~l~v~d 86 (95)
T 1v6e_A 79 GCRIHVID 86 (95)
T ss_dssp TCEEEEBC
T ss_pred CCEEEEEE
Confidence 99987754
No 164
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=59.10 E-value=11 Score=34.53 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.6
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...|+|.+++++..|++..++..|++++++||+.
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F 75 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 75 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 4578999999999999999999999999999987
No 165
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.86 E-value=16 Score=32.35 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=27.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~k 1045 (1087)
|..|-+.|.+.+|+.++|++|++++||+..
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~ 55 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPA 55 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCST
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 667789999999999999999999999853
No 166
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=58.84 E-value=4.5 Score=36.58 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=27.5
Q ss_pred EEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 596 FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
+++..++|+.+|+++|++..|++++++||..
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 4566788999999999999999999999875
No 167
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.57 E-value=11 Score=35.57 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=29.4
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+++|..++|+.+|+++|++..|++++++||..
T Consensus 44 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 44 EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 356788889999999999999999999999964
No 168
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.41 E-value=8.7 Score=33.89 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=27.1
Q ss_pred EEEeccccHHHHHHHHHHHh--CCCCCceEEEE
Q 001393 596 FRVQKQTSFMAFKEEIAKEF--GIPIQLQRFWI 626 (1087)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~w~ 626 (1087)
+.+..++|+.+|+++|++.. |++++++||..
T Consensus 24 v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~ 56 (93)
T 1wgd_A 24 LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY 56 (93)
T ss_dssp EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE
T ss_pred EecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE
Confidence 44558899999999999999 99999999874
No 169
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.78 E-value=8.4 Score=35.02 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.3
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+++..++|+.+|+.+|++..|++++++||..
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 46788889999999999999999999999975
No 170
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=56.80 E-value=12 Score=32.07 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.8
Q ss_pred eEEEEeccccHHHHHHHHHHH---hCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKE---FGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~w~ 626 (1087)
.++.+..++|+.+|+++|++. .|++++++||..
T Consensus 18 ~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 18 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 356788889999999999998 689999999864
No 171
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=56.66 E-value=11 Score=34.76 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.|..++|+.+|+++|++..|++++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 457888999999999999999999999999875
No 172
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.41 E-value=21 Score=31.49 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=46.4
Q ss_pred EEEcCCCChhHHHHHHHHh---cCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 710 LFLKSSSKPIEILRKLNQM---AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~---~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+-|+.+.+|.+|...|.+. -|+|++..-.+|. + ..++.+.++....|.+|+.|..-..
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA------G---KILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET------T---EECCTTSBGGGGTCCSSSEEEEEES
T ss_pred EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC------C---EECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4578899999999999998 6899887766663 2 2356678999999999999877654
No 173
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=56.41 E-value=6.5 Score=34.55 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=25.1
Q ss_pred ccccHHHHHHHH-HHHhCCCCCceEEEE
Q 001393 600 KQTSFMAFKEEI-AKEFGIPIQLQRFWI 626 (1087)
Q Consensus 600 ~~~~~~~~~~~~-~~~~~~~~~~~r~w~ 626 (1087)
.++|+.+|+++| ++..|+|++++||+.
T Consensus 22 ~~~TV~~lK~~I~~~~~gip~~~QrLi~ 49 (87)
T 2lxa_A 22 PSDTILQIKQHLISEEKASHISEIKLLL 49 (87)
T ss_dssp TTCBHHHHHHHHHHTTSCSSSTTEEEEE
T ss_pred CCCcHHHHHHHHHHHhcCCChHHEEEEE
Confidence 788999999999 888899999999985
No 174
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.68 E-value=13 Score=34.61 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=44.5
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEee
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 672 (1087)
..++.+..+.|+.+|++.+++.+++|++++||-. ++. .|.+ +.||++.. -.+...++|+..
T Consensus 28 k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-----~GK-----iLKD---~eTL~~~g------Ik~g~TIhLvi~ 88 (118)
T 2daf_A 28 EIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-----SGK-----ILKN---NETLVQHG------VKPQEIVQVEIF 88 (118)
T ss_dssp EEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-----TTE-----EECS---SCCHHHHS------CCSSCEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-----CCe-----EcCC---cchHHHcC------CCCCCEEEEEEe
Confidence 3456778889999999999999999999999753 221 2333 34777643 124678899986
Q ss_pred c
Q 001393 673 F 673 (1087)
Q Consensus 673 ~ 673 (1087)
.
T Consensus 89 s 89 (118)
T 2daf_A 89 S 89 (118)
T ss_dssp E
T ss_pred c
Confidence 5
No 175
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=55.67 E-value=24 Score=31.17 Aligned_cols=74 Identities=9% Similarity=-0.013 Sum_probs=55.6
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcC-CccccccC
Q 001393 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKR-TSFRLSQI 765 (1087)
Q Consensus 687 ~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~-~t~~~~el 765 (1087)
...+-||+|.-. .+ -.+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++.+ .|+....|
T Consensus 13 ~~~~~I~Vk~~~---~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~~tL~~ygI 76 (94)
T 2kan_A 13 VRKIHVTVKFPS---KQ----FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS------G---IELADDYRNLNEYGI 76 (94)
T ss_dssp SCCEEEEEECSS---CE----EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET------T---EEECCTTSBHHHHTC
T ss_pred CCCEEEEEEcCC---cE----EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------C---EECCCCcccHHHCCC
Confidence 345788998632 22 2456889999999999999999999887766653 2 234556 89999999
Q ss_pred CCCCEEEEEeC
Q 001393 766 EDGDIICFQKS 776 (1087)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1087)
.+|+.|..-..
T Consensus 77 ~~gstl~lv~r 87 (94)
T 2kan_A 77 TEFSEIVVFLK 87 (94)
T ss_dssp CTTEEEEEEEC
T ss_pred CCCCEEEEEEe
Confidence 99998876544
No 176
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=55.57 E-value=12 Score=34.49 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=31.2
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...|+|.+++++..|++..++..|++++++||+.
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF 71 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF 71 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999875
No 177
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=54.63 E-value=10 Score=34.20 Aligned_cols=69 Identities=13% Similarity=0.247 Sum_probs=51.5
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
+.|++|. . .+++ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++.+.++....|++|+
T Consensus 29 i~I~Vk~-~--g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~g~ 92 (101)
T 3m63_B 29 LNIHIKS-G--QDKW----EVNVAPESTVLQFKEAINKANGIPVANQRLIYS------G---KILKDDQTVESYHIQDGH 92 (101)
T ss_dssp CCEEEEC-S--SCCC----CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET------T---EECCTTSBTTTTTCCTTE
T ss_pred EEEEEEE-C--CEEE----EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCcCcHHHCCCCCCC
Confidence 5677774 2 2222 235678899999999999999999987766662 2 245668899999999999
Q ss_pred EEEEE
Q 001393 770 IICFQ 774 (1087)
Q Consensus 770 Ii~fQ 774 (1087)
.|..-
T Consensus 93 tI~lv 97 (101)
T 3m63_B 93 SVHLV 97 (101)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 98764
No 178
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=54.62 E-value=35 Score=31.08 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=47.5
Q ss_pred EEEcC-CCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 710 LFLKS-SSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 710 ~~v~~-~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+-|+. +.+|.+|...|.+..|+|++..-.+|. + ..++...++....|.+|+.|..-..
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~------G---k~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK------A---GFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS------S---SBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC------C---EECCCCCcHHHCCCCCCCEEEEEEE
Confidence 56786 999999999999999999998777762 1 2466688999999999999887644
No 179
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=54.03 E-value=12 Score=34.27 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=29.6
Q ss_pred eEEEEec-cccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQK-QTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++.+.. ++|+.+|+++|++..|+|++++||..
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 4578886 89999999999999999999999864
No 180
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=53.79 E-value=7.1 Score=35.58 Aligned_cols=32 Identities=6% Similarity=0.169 Sum_probs=28.3
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+.|..++|+.+|+++|++..|++++++||..
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 45677788999999999999999999999864
No 181
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.88 E-value=26 Score=30.61 Aligned_cols=73 Identities=8% Similarity=0.056 Sum_probs=53.4
Q ss_pred EEEEEEeecCCCCeEEEEeEE-EEcCCCChhHHHHHHHHh-cCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRL-FLKSSSKPIEILRKLNQM-AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~-~v~~~~~v~~l~~~i~~~-~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
+-||+|--...+. ++.+ -|..+++|.+|...|.+. -|+|++..-..|.. . + ..++...|+....|.+
T Consensus 11 M~I~Vk~~~g~~~----~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~---~-G---k~L~D~~tL~~y~i~~ 79 (88)
T 2dzj_A 11 YEVEILDAKTREK----LCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP---K-G---KSLKDEDVLQKLPVGT 79 (88)
T ss_dssp EEEEEEESSSCCC----CEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST---T-S---CCCCTTCBTTTSSCCS
T ss_pred EEEEEECCCCCEE----eeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC---C-C---cCcCCCCCHHHcCCCC
Confidence 5577775433332 2556 789999999999999994 79998876555431 1 1 2467788999999999
Q ss_pred CCEEEE
Q 001393 768 GDIICF 773 (1087)
Q Consensus 768 GDIi~f 773 (1087)
|+.|.|
T Consensus 80 ~stl~~ 85 (88)
T 2dzj_A 80 TATLYF 85 (88)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999887
No 182
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.85 E-value=73 Score=27.59 Aligned_cols=74 Identities=11% Similarity=0.173 Sum_probs=54.6
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCC-----CChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCc-CCccc
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSS-----SKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDK-RTSFR 761 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~-----~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~-~~t~~ 761 (1087)
..+-|++|. . .++. .+-++.+ .+|.+|...|.+..|+|++..-.+|. + ..++. ..++.
T Consensus 6 ~~~~v~Vk~-~--~~~~----~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~------G---k~L~D~~~~L~ 69 (92)
T 1wxv_A 6 SGLTVTVTH-S--NEKH----DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK------G---KSLKEMETPLS 69 (92)
T ss_dssp SSEEEEEEC-S--SSEE----EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET------T---EEECCSSSBHH
T ss_pred CeEEEEEEE-C--CEEE----EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC------C---eecCCCcccHH
Confidence 347888887 2 3333 3567774 99999999999999999987766663 1 12344 56888
Q ss_pred cccCCCCCEEEEEeCC
Q 001393 762 LSQIEDGDIICFQKSP 777 (1087)
Q Consensus 762 ~~el~~GDIi~fQ~~~ 777 (1087)
...|.+|+.|..-...
T Consensus 70 ~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 70 ALGIQDGCRVMLIGKK 85 (92)
T ss_dssp HHTCCSSEEEEEESCC
T ss_pred HCCCCCCCEEEEEecC
Confidence 8899999999887653
No 183
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=52.31 E-value=14 Score=33.54 Aligned_cols=79 Identities=9% Similarity=0.120 Sum_probs=53.0
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEc-CCCChhHHHHHHHHhcCCCCCCcEEEEEEe----ecCCC---ceecccCcCCccc
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLK-SSSKPIEILRKLNQMAGFDPDEEIELYEEI----KFEPC---VMCEHLDKRTSFR 761 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~-~~~~v~~l~~~i~~~~g~p~dt~l~lyEEi----k~~p~---~~ie~i~~~~t~~ 761 (1087)
++|++|-=+- .-.+-|. .+.+|.+|...|.++.|+|++..-..|.-- | .|. .+...++...|+.
T Consensus 8 M~irvrs~~G-------~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k-~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 8 TMLRVRSRDG-------LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAK-SPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEEECSSC-------EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCC-SHHHHTTCCSSCCTTCBGG
T ss_pred EEEEEECCCC-------CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCcccccc-CccccccccccCCCCCCHH
Confidence 7788874322 1234577 889999999999999999988653322211 1 011 0111247788999
Q ss_pred cccCCCCCEEEEEeC
Q 001393 762 LSQIEDGDIICFQKS 776 (1087)
Q Consensus 762 ~~el~~GDIi~fQ~~ 776 (1087)
...|++||.|.+-..
T Consensus 80 ~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 80 SLNLAHGSMVYLAYE 94 (107)
T ss_dssp GTCCCTTCEEECCCS
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999988654
No 184
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=51.46 E-value=9.3 Score=33.59 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=36.3
Q ss_pred CccEEE-EecCCCCHHHHHHHHHHHhCCCccccceeEEEEE-ecCCcccccCchhhhh
Q 001393 1016 GEPFFL-VIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFL-SLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~-~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv-~~~~~~y~~d~~~~~~ 1071 (1087)
|-+|-+ .|.+.+|+.++|++|++++||+. ++-|+-.. ..++ -|+|+..+.+
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gip~---~~QkLi~~k~~Gk--~L~D~~~L~~ 68 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLP---ERQKLLGLKVKGK--PAENDVKLGA 68 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCCCT---TTCEEESCEETTE--ECCTTSBHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCcCH---HHeEEEeeccCCc--CcCCCCCHHH
Confidence 667778 89999999999999999999985 44554210 1233 3667655654
No 185
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.74 E-value=15 Score=32.49 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=28.0
Q ss_pred EEEEeccccHHHHHHHHHHH---hCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKE---FGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~w~ 626 (1087)
++.+..++|+.+|+++|++. .|++++++||..
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 56777889999999999998 689999999864
No 186
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.81 E-value=13 Score=33.74 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...|+|.+++++..|++..++..|++++++||+.
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F 69 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 3578999999999999999999999999999975
No 187
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=49.78 E-value=20 Score=36.35 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=55.6
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCC
Q 001393 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1087)
Q Consensus 690 illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1087)
+-||+|..+-. ++ .+-|+.+++|.+|...|.+..|+|++..-.+|. + ..++...|+....|++|+
T Consensus 106 MqI~VKtl~Gk--t~----~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~------G---k~L~D~~tL~dygI~~gs 170 (189)
T 3q3f_A 106 GQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 170 (189)
T ss_dssp EEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EECCTTCBGGGGTCCTTC
T ss_pred eeeeeecCCCC--EE----EEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC------C---EECCCCCCHHHCCCCCCC
Confidence 78899876533 22 246789999999999999999999887766652 2 246668899999999999
Q ss_pred EEEEEeC
Q 001393 770 IICFQKS 776 (1087)
Q Consensus 770 Ii~fQ~~ 776 (1087)
.|-.-..
T Consensus 171 tI~Lvlr 177 (189)
T 3q3f_A 171 TLHLVLR 177 (189)
T ss_dssp EEEECCC
T ss_pred EEEEEEE
Confidence 9877543
No 188
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=49.78 E-value=11 Score=34.42 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.3
Q ss_pred EEEEe-ccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQ-KQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+.|. .++|+.+|+++|++.+|++++++||..
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 46677 789999999999999999999999864
No 189
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.15 E-value=14 Score=33.32 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=36.7
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
|-.+-+.|.+..|+.++|++|++++||+.. +-|+.....++ ++|+..+.+.
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~---~QkLi~~~~gk---L~D~~tLs~~ 68 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVS---KMLLKGWKTGD---VEDSTVLKSL 68 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTT---TCCEECCSSSC---CCTTSBHHHH
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChh---HeEEEccCCCC---CCCcCCHHHc
Confidence 666778999999999999999999999974 34441112222 6776666654
No 190
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=48.74 E-value=30 Score=35.52 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=54.9
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccC
Q 001393 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1087)
Q Consensus 686 ~~~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1087)
+++.|-|.++ + .... -++-|.++++++-|+...+++.|+|.++--.+|.= .++..+.|....++
T Consensus 18 ~~~~i~ikv~--~-~~~~----v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG---------~~i~~~~Tpk~L~~ 81 (209)
T 3uf8_A 18 PETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDM 81 (209)
T ss_dssp CCSEEEEEEE--C-SSCE----EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT---------EECCTTCCTTTTTC
T ss_pred CCCcEEEEEE--c-CCCE----EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC---------EeccCCCChHHhhh
Confidence 3455666665 4 3333 34788999999999999999999998876655542 35777888888999
Q ss_pred CCCCEEEEE
Q 001393 766 EDGDIICFQ 774 (1087)
Q Consensus 766 ~~GDIi~fQ 774 (1087)
.|||+|=.=
T Consensus 82 ed~d~I~~~ 90 (209)
T 3uf8_A 82 EDNDIIEAH 90 (209)
T ss_dssp CTTEEEEEE
T ss_pred cccccchhh
Confidence 999998443
No 191
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.63 E-value=14 Score=32.83 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=35.0
Q ss_pred CccE-EEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPF-FLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF-~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|.+| -+.|.+.+|+.++|++|++++||+. ++.|+- ..+ .-|.|+ .+.+
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~---~~QkLi--~~G--k~L~D~-tL~~ 64 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQP---ARQKVM--VKG--GTLKDD-DWGN 64 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCT---TTSCCE--ETT--EECCSS-CCCS
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCH---HHeEEE--ECC--cCCCCC-CHHH
Confidence 7788 4999999999999999999999985 344442 223 346665 4443
No 192
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=46.73 E-value=17 Score=36.17 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++++..++|+.+|+++|++..|+|++++||..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (169)
T 3l0w_B 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (169)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 356788889999999999999999999999875
No 193
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=46.50 E-value=24 Score=31.61 Aligned_cols=34 Identities=6% Similarity=0.241 Sum_probs=31.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...|+|.+++++..|.+..++..|++++.+||+.
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F 71 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF 71 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 3578999999999999999999999999999986
No 194
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.40 E-value=16 Score=31.96 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=27.4
Q ss_pred EE-EEeccccHHHHHHHHHHH-hCCCCCceEEE
Q 001393 595 SF-RVQKQTSFMAFKEEIAKE-FGIPIQLQRFW 625 (1087)
Q Consensus 595 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~r~w 625 (1087)
++ .|..++|+.+|++.|++. -|++++++||-
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~ 58 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR 58 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE
Confidence 46 788899999999999996 68999999984
No 195
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=45.96 E-value=15 Score=33.00 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=26.1
Q ss_pred EEeccccHHHHHHHH-HHHhCCCCCceEEEE
Q 001393 597 RVQKQTSFMAFKEEI-AKEFGIPIQLQRFWI 626 (1087)
Q Consensus 597 ~~~~~~~~~~~~~~~-~~~~~~~~~~~r~w~ 626 (1087)
.+..++|+.+|+++| ++..|++++++||..
T Consensus 37 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 67 (98)
T 4a20_A 37 DFSPSDTILQIKQHLISEEKASHISEIKLLL 67 (98)
T ss_dssp EECTTCBHHHHHHHHHHTTSCSCGGGEEEEE
T ss_pred ecCCCChHHHHHHHHHHHhcCCChhhEEEEE
Confidence 455889999999999 777799999999874
No 196
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=45.83 E-value=18 Score=36.90 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.2
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~ 627 (1087)
...|+|.+++++..|++..++..|++++++||+.=
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd 74 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 74 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC
Confidence 45789999999999999999999999999999973
No 197
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=45.13 E-value=16 Score=32.55 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=31.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...|+|++++.++.|.+..|+..|++++.+||..
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf 65 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF 65 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE
Confidence 4578999999999999999999999999999875
No 198
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=44.43 E-value=29 Score=34.43 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=53.8
Q ss_pred EEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEE
Q 001393 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1087)
Q Consensus 692 lFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1087)
||+|..+- +.+ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++...++....+++|+.|
T Consensus 3 I~Vk~~~G--k~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 3 IFVKTLTG--KTI----TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTL 67 (169)
T ss_dssp EEEEETTS--CEE----EEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET------T---EECCTTSBGGGGTCCTTCEE
T ss_pred EEEEeCCC--CEE----EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC------C---ccccCcCcHHHcCCCCCCEE
Confidence 56665543 222 245788999999999999999999988766652 2 24667889999999999998
Q ss_pred EEEeCC
Q 001393 772 CFQKSP 777 (1087)
Q Consensus 772 ~fQ~~~ 777 (1087)
-.-...
T Consensus 68 ~Lvlrl 73 (169)
T 3l0w_B 68 HLVLRL 73 (169)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 887653
No 199
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.40 E-value=27 Score=31.53 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=47.3
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEe
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK 775 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~ 775 (1087)
.+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|++|+.|.+=+
T Consensus 33 ~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~------G---KiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 33 LLETRLHITGRELRSKIAETFGLQENYIKIVIN------K---KQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp EEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET------T---EECCTTSBHHHHTCCSSEEEEEEC
T ss_pred EEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC------C---eECCCCCcHHHcCCCCCCEEEEEE
Confidence 455889999999999999999999987766654 2 236778899999999999876543
No 200
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=50.29 E-value=4.7 Score=33.91 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.+.+..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 45677788999999999999999999999854
No 201
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=43.93 E-value=39 Score=31.28 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=32.2
Q ss_pred EEEeCCCCCHHHHHHHHHhhccCCCC-CccEEEEEEe
Q 001393 918 NIRLPKQSTVGDVINELKTKVELSHP-NAELRLLEVF 953 (1087)
Q Consensus 918 ~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lrl~~v~ 953 (1087)
+|++.++.|..+|+.++.++++++.+ .....|.+|.
T Consensus 27 svlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~ 63 (116)
T 1wxa_A 27 TILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVM 63 (116)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEE
Confidence 78999999999999999999999863 5679999985
No 202
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=41.94 E-value=31 Score=29.83 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=42.3
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEE-EEEEeecCCCceecccCcCCccccccCCCCCEEE
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIE-LYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIIC 772 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~-lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~ 772 (1087)
+.+|..-++..|+..+.+..+++.. +.. .+=-+. +++ -.+..+.+++...+.|||+|.
T Consensus 21 LRIP~~~tvK~Li~~l~ea~~l~~~-~~~~~~irv~-NK~---~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 21 LRLSDYHPVKKVIDIAWQAQSVSMP-PREGHWIRVV-NKD---KVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEETTSBTTHHHHHHHHHSCCCSC-CCTTCEEEEG-GGT---EEEETTSBTGGGTCCTTCEEE
T ss_pred EECCCchhHHHHHHHHHHHhCCCcC-CCCCCEEEEe-cCC---EEEcCCCEEeeCCcCCCCEEE
Confidence 4589999999999999999999842 112 333332 222 246778888888999999985
No 203
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=40.38 E-value=13 Score=32.37 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.2
Q ss_pred EeccccHHHHHHHHHHHhCCCCCceEEE
Q 001393 598 VQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1087)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~r~w 625 (1087)
+..++|+.+|++.|++..|++++++||.
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~ 44 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRIL 44 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCE
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEE
Confidence 5567899999999999999999999984
No 204
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=39.73 E-value=29 Score=30.13 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=27.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEE
Q 001393 1019 FFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFL 1055 (1087)
Q Consensus 1019 F~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv 1055 (1087)
+.++|.+|-+|++++++|.+||+++..+ +++..=
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~~~---~~LsYk 49 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRLEH---TKLSYR 49 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCGGG---CCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcce---eEEEee
Confidence 4688999999999999999999998543 555443
No 205
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=39.63 E-value=31 Score=31.62 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=47.1
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+|++|..-..
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~------G---k~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE------G---IFIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEET------T---EEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEEC------C---EECCCCCCHHHCCCCCCCEEEEEEE
Confidence 45788999999999999999999987776662 2 2356678999999999999887644
No 206
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=39.48 E-value=29 Score=31.17 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=26.4
Q ss_pred EEEEeccccHHHHHHHHHHHh-CCC-CCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEF-GIP-IQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~r~w~ 626 (1087)
++.+..++|+.+|+++|++.+ |.+ ++++||..
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy 72 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY 72 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE
Confidence 667788999999999999876 444 59999864
No 207
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=38.67 E-value=59 Score=28.33 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=53.5
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhc--CCCCCCcEEEEEEeecCCCceecccCcCCccccc--c
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMA--GFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLS--Q 764 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~--g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~--e 764 (1087)
.+-|++|.-+-.... -.+-++.+.+|.+|...|.+.. |+|++..-.+|. + ..++...++... .
T Consensus 7 ~m~i~Vk~~~~~~~~----~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~------G---k~L~D~~tL~~~~~~ 73 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRD----LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS------G---KLLLDHQCLRDLLPK 73 (93)
T ss_dssp CCEEEEECSSSSCCC----EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET------T---EECCSSSCHHHHSCS
T ss_pred EEEEEEEeCCCCeEE----EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC------C---EECcCcCCHHHHhcC
Confidence 477888865432111 2223458999999999999998 999887766653 2 245667788888 8
Q ss_pred CCCCCEEEEEeC
Q 001393 765 IEDGDIICFQKS 776 (1087)
Q Consensus 765 l~~GDIi~fQ~~ 776 (1087)
+.+|+.|..-..
T Consensus 74 i~~~~~i~lv~~ 85 (93)
T 1wgd_A 74 QEKRHVLHLVCN 85 (93)
T ss_dssp SSCSEEEEEECC
T ss_pred CCCCCEEEEEeC
Confidence 999998877544
No 208
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=44.72 E-value=6.6 Score=32.98 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=35.5
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|..|.+.+.+..|+.++|++|++++|++... .++ +..++ -|+|+..+.+
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~---qrL--~~~gk--~L~d~~tL~~ 58 (76)
T 3b1l_X 10 SYGFPVEVDSDTSILQLKEVVAKQQGVPADQ---LRV--IFAGK--ELPNHLTVQN 58 (76)
Confidence 7788899999999999999999999998543 333 32333 3566554443
No 209
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=36.59 E-value=36 Score=30.11 Aligned_cols=33 Identities=6% Similarity=0.182 Sum_probs=30.0
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1087)
.+-|+.+.+++.++-.|++++++++++.|-||=
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV 55 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV 55 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 356899999999999999999999999999984
No 210
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=36.49 E-value=7.4 Score=39.85 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQ 774 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ 774 (1087)
++-|.++++++.|+...+++.|++++.---+|.- ..|.++.|.+..++.|||+|=+-
T Consensus 34 ~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDG---------qRI~dddTPadL~MEDGDtIDV~ 90 (227)
T 3v7o_A 34 FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDMEDNDIIEAH 90 (227)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEEEccCChHHHHHHHHHHHhCCCccceEEEECC---------EecCCCCCHHHcCCCCCCEEEEE
Confidence 5668899999999999999999997654444542 45777889999999999977443
No 211
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=36.22 E-value=30 Score=32.23 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=37.0
Q ss_pred ccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 1017 EPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 1017 ~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
.-+.+.|.+.+|+.++|++|+.+.||+..+. + |+..++ -|+|+..|.+.
T Consensus 12 tti~lev~~sdTV~~lK~kI~~~egIP~~qQ---r--Li~~Gk--~LeD~~TLsdy 60 (118)
T 2fnj_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPEEQ---R--LYKDDQ--LLDDGKTLGEC 60 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGE---E--EEETTE--ECCTTSBHHHH
T ss_pred EEEEEEeCCcChHHHHHHHHHHHhCCCHHHe---E--EEECCe--ECCCCCCHHHc
Confidence 3467899999999999999999999987543 3 334554 47887777753
No 212
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.38 E-value=8.4 Score=36.38 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
++.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (128)
T 3u5e_m 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (128)
T ss_dssp --------------------------------
T ss_pred EEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE
Confidence 45677888999999999999999999999874
No 213
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=34.35 E-value=50 Score=28.31 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=36.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCC-ceEEEEEeecCCCccCCCCCCCC
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLP 643 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~w~~~~~~n~~~rp~~~~~~ 643 (1087)
..++|+.++++.++...-++..|++++ .+||-. -+..++|++.+.+
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF----DGdRLdp~~tp~D 68 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF----EGEWLDPNDQVQS 68 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE----TTEECCTTSBGGG
T ss_pred eEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE----cCcccCccCChhh
Confidence 468999999999999999999999999 799854 2344677665543
No 214
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=34.33 E-value=8.4 Score=37.67 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+-|+.+++|.+|...|.+..|+|++..-.+|.- ..++...|+....|++|+.|-.-..
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC---------EEccccCcHHHcCCCCCCEEEEEee
Confidence 457788999999999999999999877666532 2356678999999999998776544
No 215
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=34.22 E-value=55 Score=28.45 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEec
Q 001393 813 EDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTP 849 (1087)
Q Consensus 813 ~~~f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr~~~ 849 (1087)
++-|.+.|...++|.||..+|+.||+++ ...+..+.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~yk 56 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKL 56 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEec
Confidence 3579999999999999999999999973 44555444
No 216
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=33.87 E-value=35 Score=34.46 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.7
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
...|+|.+++++..|++..++..|++++.+||+.
T Consensus 68 eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF 101 (207)
T 3tix_A 68 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY 101 (207)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 4578999999999999999999999999999987
No 217
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.36 E-value=32 Score=31.30 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=53.8
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCC--------------cEEE-EEEeecCCCceecc
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDE--------------EIEL-YEEIKFEPCVMCEH 753 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt--------------~l~l-yEEik~~p~~~ie~ 753 (1087)
.+-||+|-.+-. ++. +.|..+++|.+|...|.+..|+|++. ...| |. + ..
T Consensus 7 ~M~I~Vk~l~g~--~~~----v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~------G---k~ 71 (105)
T 1v2y_A 7 GMTVRVCKMDGE--VMP----VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA------G---EK 71 (105)
T ss_dssp SEEEEEECSSSC--EEE----EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS------S---CE
T ss_pred cEEEEEEecCCC--EEE----EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC------C---cC
Confidence 377888865543 222 66899999999999999999988642 1222 31 2 23
Q ss_pred c-CcCCccccccCCCCCEEEEEeCC
Q 001393 754 L-DKRTSFRLSQIEDGDIICFQKSP 777 (1087)
Q Consensus 754 i-~~~~t~~~~el~~GDIi~fQ~~~ 777 (1087)
+ +...|+....|++|+.|.|=..-
T Consensus 72 L~dD~~tL~dygI~~g~~l~lv~~l 96 (105)
T 1v2y_A 72 LTEDRKKLRDYGIRNRDEVSFIKKL 96 (105)
T ss_dssp ECCSSSBHHHHTCCSSEEEEEEECS
T ss_pred ccCCcCCHHHcCCCCCCEEEEEehh
Confidence 4 46789999999999999998764
No 218
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.15 E-value=40 Score=31.28 Aligned_cols=75 Identities=9% Similarity=0.028 Sum_probs=57.6
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCC
Q 001393 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1087)
Q Consensus 689 ~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1087)
.+-+.+|..-+ .++. .+-+..+.+|.+|...+.+.+|.|++..-.+|..- .++.+.|+.+..+++|
T Consensus 15 ~itvkv~l~~~-~~k~----tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GK---------iLKD~eTL~~~gIk~g 80 (118)
T 2daf_A 15 LATVKVVLIPV-GQEI----VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGK---------ILKNNETLVQHGVKPQ 80 (118)
T ss_dssp CEEEEEEETTT-CCEE----EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTE---------EECSSCCHHHHSCCSS
T ss_pred cEEEEEEEcCC-CcEE----EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCe---------EcCCcchHHHcCCCCC
Confidence 35555554433 3443 23488999999999999999999999888787632 3678999999999999
Q ss_pred CEEEEEeCC
Q 001393 769 DIICFQKSP 777 (1087)
Q Consensus 769 DIi~fQ~~~ 777 (1087)
.+|=..+.+
T Consensus 81 ~TIhLvi~s 89 (118)
T 2daf_A 81 EIVQVEIFS 89 (118)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEec
Confidence 998777653
No 219
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=32.67 E-value=46 Score=29.61 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.8
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.-++-|....|+..|++.|.+..|++++++||-.
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~ 58 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIY 58 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 3457788889999999999999999999999854
No 220
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.03 E-value=1.9e+02 Score=24.95 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=50.3
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcC-CccccccCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKR-TSFRLSQIE 766 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~-~t~~~~el~ 766 (1087)
..+-||+|..+-. . -.+-|+.+.+|.+|...|.+.. +..-.| +|. + ..++.+ .++....|.
T Consensus 6 ~~m~i~Vk~~~g~--~----~~~~v~~~~TV~~LK~~i~~~~--~~~qrL-i~~------G---k~L~D~~~tL~~y~i~ 67 (95)
T 1wia_A 6 SGINVRLKFLNDT--E----ELAVARPEDTVGTLKSKYFPGQ--ESQMKL-IYQ------G---RLLQDPARTLSSLNIT 67 (95)
T ss_dssp CSEEEEEEETTTE--E----EEEEECSSSBHHHHHHHHSSST--TTTCEE-EET------T---EECCCSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCC--E----EEEEECCCCcHHHHHHHHHhhC--cCcEEE-EEC------C---EEccCCcCCHHHcCCC
Confidence 4588898865432 2 1356889999999999999887 544444 331 2 245556 899999999
Q ss_pred CCCEEEEEeC
Q 001393 767 DGDIICFQKS 776 (1087)
Q Consensus 767 ~GDIi~fQ~~ 776 (1087)
+|+.|.+-..
T Consensus 68 ~g~~i~l~~~ 77 (95)
T 1wia_A 68 NNCVIHCHRS 77 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCCEEEEEEC
Confidence 9999988765
No 221
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=31.89 E-value=41 Score=34.01 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=37.7
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNR 1072 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~ 1072 (1087)
|..|.+.|.+.+|+.++|++|+++.|++..+ .|+ +..++ -|+|+..|.+.
T Consensus 115 Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~---QrL--i~~Gk--~L~D~~tL~dy 164 (189)
T 3q3f_A 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---QRL--IFAGK--QLEDGRTLSDY 164 (189)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---CCE--EETTE--ECCTTCBGGGG
T ss_pred CCEEEEEeCCCCcHHHHHHHHHhccCCCHHH---EEE--EECCE--ECCCCCCHHHC
Confidence 8889999999999999999999999998754 333 22333 36776656543
No 222
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.66 E-value=36 Score=30.77 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHHh--CCCCCc-eEEEE
Q 001393 601 QTSFMAFKEEIAKEF--GIPIQL-QRFWI 626 (1087)
Q Consensus 601 ~~~~~~~~~~~~~~~--~~~~~~-~r~w~ 626 (1087)
++|+.+|+++|++.. |+++++ +||..
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~ 72 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIY 72 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEE
Confidence 389999999999999 999999 99863
No 223
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=31.28 E-value=72 Score=28.48 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=49.5
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhc-CCCC-CCcEEEEEEeecCCCceecccCcCCccccc--
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMA-GFDP-DEEIELYEEIKFEPCVMCEHLDKRTSFRLS-- 763 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~-g~p~-dt~l~lyEEik~~p~~~ie~i~~~~t~~~~-- 763 (1087)
..+-||+|..+-....+ .+-|+.+.+|.+|...|.+.. |.|+ +..-.+|. + ..++...|+...
T Consensus 22 ~~m~I~VK~~~g~~~~i----~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~------G---k~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQ----TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS------G---RLLPDHLQLKDILR 88 (99)
T ss_dssp -CEEEEEECTTSSSCCE----EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET------T---EEECTTSBTHHHHT
T ss_pred CeEEEEEEcCCCCEEEE----EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC------C---EECCCCCCHHHHhc
Confidence 45889999755443333 344689999999999999865 5554 55444442 2 245677888887
Q ss_pred cCCCCCEEE
Q 001393 764 QIEDGDIIC 772 (1087)
Q Consensus 764 el~~GDIi~ 772 (1087)
.|++|+.|.
T Consensus 89 ~I~~~~tih 97 (99)
T 2kdb_A 89 KQDEYHMVH 97 (99)
T ss_dssp TTCSEEEEE
T ss_pred CCCCCCEEE
Confidence 899998874
No 224
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=30.80 E-value=35 Score=37.49 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=29.1
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
++.+..++|+.+|+++|++..|+|++++||..
T Consensus 18 ~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 18 PVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 46788899999999999999999999999863
No 225
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=30.78 E-value=53 Score=30.51 Aligned_cols=32 Identities=6% Similarity=0.206 Sum_probs=29.1
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~ly 740 (1087)
.+.|+.+.+|++++-.|++++++++++.|-||
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~ 81 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIF 81 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEE
Confidence 34599999999999999999999999999888
No 226
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=30.73 E-value=10 Score=36.98 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
++.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (152)
T 3u5c_f 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp --------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45677888999999999999999999999874
No 227
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.37 E-value=1.9e+02 Score=27.12 Aligned_cols=63 Identities=13% Similarity=0.275 Sum_probs=42.5
Q ss_pred ceEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhc-----cCCCCCccEEEEEEeccEEEEecCCcccccc
Q 001393 900 KNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKV-----ELSHPNAELRLLEVFYHKIYKIFAPNEKIEN 969 (1087)
Q Consensus 900 k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~-----~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~ 969 (1087)
-+++|++-...-+... .+-++.+.||.+|.+.+.... +.|.+...+|| |++|| ++..+..|.+
T Consensus 15 ~~~~i~~kt~~G~~i~--~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrL--Iy~GK---~LeD~~TLsd 82 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIG--PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKL--ISAGK---VLENSKTVKD 82 (126)
T ss_dssp CCEEEEEEETTSCEEE--EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEE--EETTE---ECCTTSBGGG
T ss_pred ccEEEEEEECCCCEEE--eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEE--EECCe---ECcCCCcHHH
Confidence 4566666555444332 467889999999999995543 34433367888 78996 6777777765
No 228
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.28 E-value=1.9e+02 Score=26.56 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=41.5
Q ss_pred EEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhc------cCCCCCccEEEEEEeccEEEEecCCcccccc
Q 001393 902 LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKV------ELSHPNAELRLLEVFYHKIYKIFAPNEKIEN 969 (1087)
Q Consensus 902 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~------~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~ 969 (1087)
|.|++....- ..+.+-|..+.||.+|.+.++... +++-....+|| |+.|| ++..+..|.+
T Consensus 17 m~I~vKtl~G---~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrL--Iy~GK---~LeD~~TL~~ 82 (116)
T 1wgh_A 17 INLRLILVSG---KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRL--IYQGR---FLHGNVTLGA 82 (116)
T ss_dssp EEEEEECSSS---CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEE--EETTE---EECSSCBTTT
T ss_pred EEEEEEeCCC---CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEE--EECCc---CCCCCCcHHH
Confidence 5666654332 256788999999999999999843 33222457888 78896 4566667765
No 229
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=30.15 E-value=43 Score=31.15 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=35.8
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
..=+.+.+.+.+|+.++|++|+.+.|++... -+ |+..+ .-|+|+..|.+
T Consensus 11 ktTI~ldve~sdTV~~lK~kI~~~~giPp~q---Qr--LI~~G--k~LeD~kTL~d 59 (118)
T 4ajy_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPPDE---QR--LYKDD--QLLDDGKTLGE 59 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGG---EE--EEETT--EECCTTSBTTT
T ss_pred CEEEEEEcCCCChHHHHHHHHHHHHCCCHHH---eE--EEeCC--eECCCcCCHHH
Confidence 4456788999999999999999999999754 33 33344 34677655554
No 230
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=29.48 E-value=1e+02 Score=28.76 Aligned_cols=61 Identities=10% Similarity=0.190 Sum_probs=43.0
Q ss_pred eEEEEEEcCCCCeEEEEEEEeCCCCCHHHHHHHHHhhc------cCCCCCccEEEEEEeccEEEEecCCcccccc
Q 001393 901 NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKV------ELSHPNAELRLLEVFYHKIYKIFAPNEKIEN 969 (1087)
Q Consensus 901 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~------~~~~~~~~lrl~~v~~~k~~~~~~~~~~i~~ 969 (1087)
.|+|++....-+ .+.+-++.+.||.+|.+.++... +++.....+|| |++||+ +..+..|.+
T Consensus 17 ~m~I~vktl~G~---~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrL--Iy~GK~---LeD~~TL~~ 83 (125)
T 2gow_A 17 MINLRLILVSGK---TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRL--IYQGRF---LHGNVTLGA 83 (125)
T ss_dssp CEEEEEECTTSC---EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEE--ESSSSE---EESSCBTGG
T ss_pred eEEEEEEeCCCC---EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEE--EECCcC---CCCCCcHHH
Confidence 477777654333 56889999999999999999843 34323457888 788975 455666665
No 231
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=29.46 E-value=11 Score=35.45 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+-|+.+.+|.+|...|.+..|+|++..-.+|.- ..++.+.|+....|.+|+.|..-..
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEECC---------EECCCCCchhhhccCCCCEEEEEEE
Confidence 457788999999999999999999877666532 2356678999999999997765443
No 232
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=29.18 E-value=55 Score=33.54 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=37.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCC
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNR 639 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~ 639 (1087)
..|+|.+++++..|++..|+..|++++++||-.-..+-+.+..|..
T Consensus 33 v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~ 78 (209)
T 3uf8_A 33 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPED 78 (209)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTT
T ss_pred EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHH
Confidence 4689999999999999999999999999999765444444444443
No 233
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=28.93 E-value=92 Score=33.91 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=55.4
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCCC
Q 001393 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1087)
Q Consensus 688 ~~illFlK~fD~~~q~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1087)
..+-||+|..+-. .+ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|.+
T Consensus 232 ~~MqI~VKtl~Gk--~~----~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~------G---k~L~D~~TLsdygI~~ 296 (307)
T 3ai5_A 232 GSMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 296 (307)
T ss_dssp CCEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTGGGTCCT
T ss_pred CeEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC------C---eecCCCCCHHHcCCCC
Confidence 4578888876532 22 356889999999999999999999987766653 2 2356688999999999
Q ss_pred CCEEEEE
Q 001393 768 GDIICFQ 774 (1087)
Q Consensus 768 GDIi~fQ 774 (1087)
|+.|..-
T Consensus 297 gstL~Lv 303 (307)
T 3ai5_A 297 ESTLHLV 303 (307)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9988653
No 234
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=28.25 E-value=29 Score=30.37 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=36.5
Q ss_pred CccEEEEec--CCCCHHHHHHHH-HHHhCCCccccceeEEEEEecCCcccccCchhhhhhc
Q 001393 1016 GEPFFLVIH--EGETLAEVKERI-QRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRF 1073 (1087)
Q Consensus 1016 G~PF~~~v~--~~E~~~~~k~Rl-~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~~~ 1073 (1087)
|.-|-+.|. +.+|..++|++| +++.|++..+ .|+ +..+ +-|+|+..|.+.-
T Consensus 11 g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~---QrL--i~~G--k~L~D~~tL~~y~ 64 (87)
T 2lxa_A 11 APKFSIEHDFSPSDTILQIKQHLISEEKASHISE---IKL--LLKG--KVLHDNLFLSDLK 64 (87)
T ss_dssp SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTT---EEE--EETT--EECCTTCBHHHHC
T ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHH---EEE--EECC--EECcCcCCHHHcC
Confidence 655767654 999999999999 9999988644 343 3344 3478877777653
No 235
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=27.99 E-value=36 Score=29.19 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=24.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcccc
Q 001393 1019 FFLVIHEGETLAEVKERIQRKLQVLDEEF 1047 (1087)
Q Consensus 1019 F~~~v~~~E~~~~~k~Rl~~rl~v~~kef 1047 (1087)
|.+.+.+..|+.++++.|+++++++...|
T Consensus 16 ~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~ 44 (80)
T 2pjh_A 16 KRITATKRETAATFLKKVAKEFGFQNNGF 44 (80)
T ss_dssp EECCCCSSCCHHHHHHHHHHHTCCCTTTC
T ss_pred EEEEcCCcChHHHHHHHHHHHcCCCCCcc
Confidence 45667788999999999999999987554
No 236
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=27.82 E-value=57 Score=30.61 Aligned_cols=33 Identities=6% Similarity=0.176 Sum_probs=29.6
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1087)
.+.|+.+.+|++++..|++++++++++.|-||=
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 355999999999999999999999999988873
No 237
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=27.19 E-value=49 Score=36.06 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
.++++..++|+.+|+++|++..|++++++||..
T Consensus 246 ~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~ 278 (307)
T 3ai5_A 246 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 278 (307)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe
Confidence 357788899999999999999999999999864
No 238
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=26.56 E-value=61 Score=29.05 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=26.6
Q ss_pred Ccc--EEEEecCCCCHHHHHHHHHHHhCCC-cccc
Q 001393 1016 GEP--FFLVIHEGETLAEVKERIQRKLQVL-DEEF 1047 (1087)
Q Consensus 1016 G~P--F~~~v~~~E~~~~~k~Rl~~rl~v~-~kef 1047 (1087)
+++ |.+.|.++=+|.++.+||++|++++ ..++
T Consensus 20 ~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i 54 (98)
T 1q1o_A 20 SSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNI 54 (98)
T ss_dssp CCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCC
T ss_pred ccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccc
Confidence 345 8899999999999999999999985 3444
No 239
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=26.32 E-value=61 Score=30.12 Aligned_cols=33 Identities=9% Similarity=0.248 Sum_probs=29.7
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1087)
.+.|+.+.++++++-.|+++++++++..|-||=
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 83 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT 83 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE
Confidence 345899999999999999999999999998884
No 240
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.02 E-value=52 Score=29.71 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHhc--CCCCCC-cEEEEEEeecCCCceecccCcCCccccccCCCCCEEEEEeC
Q 001393 715 SSKPIEILRKLNQMA--GFDPDE-EIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1087)
Q Consensus 715 ~~~v~~l~~~i~~~~--g~p~dt-~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1087)
+.+|.+|...|.+.. |+|++. .-.+|. + ..++...++....+.+|+.|..-..
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~------G---k~L~D~~tL~~y~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYC------G---RKLKDDQTLDFYGIQPGSTVHVLRK 99 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEET------T---EECCTTCBHHHHTCCTTCEEEEEES
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEEC------C---eECCCCCcHHHcCCCCCCEEEEEeC
Confidence 489999999999999 999887 544442 2 2356778999999999999877654
No 241
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.77 E-value=43 Score=29.37 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=34.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCc-hhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDT-DTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~-~~~~~ 1071 (1087)
|-.|.+.|.+..|+.++|++|+++. .++.|+ +..+ .-|+|+ ..|.+
T Consensus 17 g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrL--i~~G--k~L~D~~~tL~~ 63 (95)
T 1wia_A 17 DTEELAVARPEDTVGTLKSKYFPGQ------ESQMKL--IYQG--RLLQDPARTLSS 63 (95)
T ss_dssp TEEEEEEECSSSBHHHHHHHHSSST------TTTCEE--EETT--EECCCSSCBTTT
T ss_pred CCEEEEEECCCCcHHHHHHHHHhhC------cCcEEE--EECC--EEccCCcCCHHH
Confidence 7788999999999999999999987 445555 2233 357776 55554
No 242
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=25.10 E-value=70 Score=29.22 Aligned_cols=32 Identities=6% Similarity=0.201 Sum_probs=28.7
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~ly 740 (1087)
.+.|+.+.++++++-.|++++++++++.|-||
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~ 78 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF 78 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Confidence 45688899999999999999999999998775
No 243
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.82 E-value=15 Score=37.09 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=0.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCCceEEEE
Q 001393 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1087)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~ 626 (1087)
++.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 tLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf 45 (189)
T 2xzm_9 14 IYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN 45 (189)
T ss_dssp --------------------------------
T ss_pred EEEECCcChHHHHHHHHHHHhCcChhHEEEEe
Confidence 46677788999999999999999999999974
No 244
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=24.71 E-value=70 Score=35.13 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=36.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCchhhhh
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFN 1071 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv~~~~~~y~~d~~~~~~ 1071 (1087)
|-.|-+.|.+.+|++++|++|++++||+.. +-|+-...+ ++.-+.|+..+.+
T Consensus 14 g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~---~QkLi~~k~-~Gk~l~D~~~L~~ 65 (320)
T 3shq_A 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPE---RQKLLNLKY-KGKTAADNVKISA 65 (320)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGG---GCEETTCBS-SSSBCCTTSBTTS
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHH---HeEEeeccc-CCcccCccccHHH
Confidence 788889999999999999999999999873 344421111 1233566555544
No 245
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=24.60 E-value=69 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=25.3
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCC
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVL 1043 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~ 1043 (1087)
+-=|.++|..+=+|.++|++|..|+.+.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4458899999999999999999999994
No 246
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=24.41 E-value=92 Score=27.87 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCHHHHHHHHHHHhCC
Q 001393 813 EDAFCLELSKQHSYDEVVERVARKIGL 839 (1087)
Q Consensus 813 ~~~f~l~ls~~~~Y~~la~~va~~l~~ 839 (1087)
++-+.|.++..++|++|..+|.++|++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~ 48 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISN 48 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcC
Confidence 346999999999999999999999984
No 247
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=24.18 E-value=6e+02 Score=27.90 Aligned_cols=111 Identities=12% Similarity=0.282 Sum_probs=74.4
Q ss_pred EEEEcCCCChhHHHHHHHHhcCC---CCCCcEEEE--EEeecCCCceecccCcCCccccccCCCCCEEEEEeCCCCCCcc
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGF---DPDEEIELY--EEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQ 783 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~---p~dt~l~ly--EEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~~~~~~~ 783 (1087)
.+-...+.+|.|....|+++++- -+-.+--|| +| +|..- --++...|+....+++|+.|.|-+..
T Consensus 16 ~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~---~~~~~-~Wl~~~~~l~~y~~~~~~~l~~~~~~------ 85 (371)
T 3ivf_A 16 TMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDD---DPKKG-IWLEAGKALDYYMLRNGDTMEYRKKQ------ 85 (371)
T ss_dssp EEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCS---SGGGC-EECCTTSBGGGGTCCTTCEEEEEECE------
T ss_pred EEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCC---CCCcC-EeccCCCCHHHhCCCCCceeeccCce------
Confidence 34557889999999999998752 122333333 33 13222 34666779999999999999997652
Q ss_pred CCCCCCHHHHHHHhhceeEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEec
Q 001393 784 ECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTP 849 (1087)
Q Consensus 784 ~~~y~~v~~yy~~L~nr~~v~f~~~~~~~~~~f~l~ls~~~~Y~~la~~va~~l~~~~p~~lr~~~ 849 (1087)
+.+++.- ++.....+.+....+=.++.+.|+++||+.++++-=|+.
T Consensus 86 -----------------~~~~V~l---~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 86 -----------------RPLKIRM---LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp -----------------EEEEEEC---TTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred -----------------eEEEEEC---cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 1222221 233456788888888899999999999987666655544
No 248
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.17 E-value=30 Score=31.51 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=27.8
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001393 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1087)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~v~~k 1045 (1087)
|.-|-+.|.+..|+.++|+.|+++.|++..
T Consensus 17 g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~ 46 (105)
T 1v2y_A 17 GEVMPVVVVQNATVLDLKKAIQRYVQLKQE 46 (105)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 888999999999999999999999998764
No 249
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=23.56 E-value=81 Score=29.78 Aligned_cols=32 Identities=6% Similarity=0.238 Sum_probs=29.2
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEE-E
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIEL-Y 740 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~l-y 740 (1087)
.+.|+.+.++++++-.|++++++++++.|-| |
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~ 88 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLV 88 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEE
Confidence 4668999999999999999999999999877 6
No 250
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=23.24 E-value=74 Score=29.44 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=28.7
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEE
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~ly 740 (1087)
.+.|+.+.++++++-.|++++++++++.|-||
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~ 79 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLF 79 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEE
Confidence 45688899999999999999999999998775
No 251
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.49 E-value=1.2e+02 Score=26.30 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=38.6
Q ss_pred EEEEcCCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCCCceecccCcCCccccccCC
Q 001393 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1087)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1087)
-+-|+...++++|+|.||++-.+.++.-+.+= +...-|+++.+.++....|+
T Consensus 24 VvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~------d~~~~e~LdLskSLndlgir 75 (91)
T 2daj_A 24 IVRVSPHASLQELAPIICSKCEFDPLHTLLLK------DYQSQEPLDLTKSLNDLGLR 75 (91)
T ss_dssp EEEECSSSCTTTHHHHHHHHTTCCTTSEEEES------CSSCCCBCCTTSCHHHHTCS
T ss_pred EEEeCCCCcHHHHHHHHhhcccCChhhEEEec------CCCCCcccchhcchhhhhhh
Confidence 35678999999999999999999988766552 22223778888888665443
No 252
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=21.10 E-value=95 Score=26.47 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=22.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCC
Q 001393 1019 FFLVIHEGETLAEVKERIQRKLQVL 1043 (1087)
Q Consensus 1019 F~~~v~~~E~~~~~k~Rl~~rl~v~ 1043 (1087)
+.+.|.++=+|.++.+||++|++++
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHccc
Confidence 4577888889999999999999975
No 253
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=20.62 E-value=82 Score=27.93 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=0.0
Q ss_pred CCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEE----------ecCCcccccCchhh
Q 001393 1015 FGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFL----------SLGRPEYLVDTDTV 1069 (1087)
Q Consensus 1015 fG~PF~~~v~~~E~~~~~k~Rl~~rl~v~~kef~k~Kfaiv----------~~~~~~y~~d~~~~ 1069 (1087)
|+-||+++ +.|-|..|+-.+|+..++ .+.|+|+| +.+.-.-|.|+|++
T Consensus 25 ~~dpviL~-~~GsTv~Dfa~~IH~di~------~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV 82 (93)
T 2eki_A 25 YTSPVVLP-YSRTTVEDFCMKIHKNLI------KEFKYALVWGLSVKHNPQKVGKDHTLEDEDVI 82 (93)
T ss_dssp SSSCEEEE-TTSCCHHHHHHHHCTTCT------TTEEEEEEBSTTSSSSSEEECSSCCCCSSEEE
T ss_pred CCCCEEEe-cCCCCHHHHHHHHHHHHH------hhccEEEEecccccCCCEECCCCcEecCCCEE
No 254
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=20.11 E-value=1.3e+02 Score=25.59 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEeccccHHHHHHHHHHHhCCCCCceEEEEEeecCCCccCCCCCCCCchhhhhHHHHHhhhccccccceeEEEEe
Q 001393 597 RVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1087)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 671 (1087)
+...+.|+.+++..|.. .+.+...+.|. +.-|.+.+...+.++||+++. -.+.-.|+||.
T Consensus 23 ~F~~~~tl~~v~~fv~~-~~~~~~~f~L~--------t~fPrk~l~~~d~~~TL~e~g------L~p~a~L~ve~ 82 (84)
T 3qx1_A 23 RFLASNKLQIVFDFVAS-KGFPWDEYKLL--------STFPRRDVTQLDPNKSLLEVK------LFPQETLFLEA 82 (84)
T ss_dssp EEETTSBHHHHHHHHHH-TTCCTTTEEEE--------CSSSCCBGGGSCTTSBTTTTT------CCSEEEEEEEE
T ss_pred EeCCCCCHHHHHHHHHH-cCCCCCCeEEE--------eCCCCCCCcCCCCCCCHHHCC------CCCCCEEEEEe
Done!