BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001394
(1087 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 712 SKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKE 765
+++N+D C +C DGG+L+CCD CPRAFH+ C+S P IPSGTW C C+ +E
Sbjct: 4 AQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 59
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 825 VILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINLALQKLVDRGEE 878
+I CD C R +H+ CL L+E+P G W C+ C + +Q++ R EE
Sbjct: 20 LICCDGCPRAFHLACLSP----PLREIPSGTWR-CSSC--LQATVQEVQPRAEE 66
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 713 KENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKE 765
+N+D C +C DGG+L+CCD CPRAFH+ C+S P IPSGTW C C+ +E
Sbjct: 2 SKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 56
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 825 VILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858
+I CD C R +H+ CL L+E+P G W C
Sbjct: 17 LICCDGCPRAFHLACLS----PPLREIPSGTWRC 46
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 10/89 (11%)
Query: 715 NDDLCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYCMNTFQKEKFVEYNA 772
N+D C +C +GGDLLCC+ CP+ FH+ C +L PSG W C +C + + E VEY+
Sbjct: 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPE--VEYDC 63
Query: 773 N----ARAAGRIEGVDPFAQMVSRCIRIV 797
+ ++ +G+ P Q +C R++
Sbjct: 64 DNLQHSKKGKTAQGLSPVDQ--RKCERLL 90
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 715 NDDLCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYCMNTFQKEKFVEYNA 772
N+D C +C +GG+LLCC+ CP+ FH+ C +L PSG W C +C + + E VEY+
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPE--VEYDC 60
Query: 773 NARA 776
+A +
Sbjct: 61 DAPS 64
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 709 PFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVS--LPGIPSGTWHCRYC 758
P S + + C +C DGG+LLCCD+CP ++HI C++ LP IP+G W C C
Sbjct: 2 PLGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 814 DFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858
+FC+ ++ CD C YH+ CL L E+P G+WLC
Sbjct: 10 EFCRVCKDGGELLCCDTCPSSYHIHCLN----PPLPEIPNGEWLC 50
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 709 PFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCV--SLPGIPSGTWHCRYC 758
P S + + C +C DGG+LLCCD+CP ++HI C+ +L +P G W C C
Sbjct: 2 PLGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRC 53
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 814 DFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858
+FC+ ++ CD C YH+ CL+ L E+P G+W C
Sbjct: 10 EFCRVCKDGGELLCCDTCPSSYHIHCLR----PALYEVPDGEWQC 50
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 715 NDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKEK 766
++D C +C G LL CD+C R +H+DC+ P IP G W C C + K++
Sbjct: 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKE 57
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 814 DFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC--CAD 861
DFC +++CD C R YH+ CL L+ +PKG W+C C D
Sbjct: 6 DFCSVCRKSGQLLMCDTCSRVYHLDCLD----PPLKTIPKGMWICPRCQD 51
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 709 PFSSKEND--DLCGICMDGGDLLCCDSCPRAFHIDCV--SLPGIPSGTWHCRYC 758
P S E D D C +C GG+++ CD+CPRA+H+ C+ + P G W C +C
Sbjct: 2 PLGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 813 RDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858
+D+C+ +ILCD C R YH+ CL D+++ P+GKW C
Sbjct: 11 QDYCEVCQQGGEIILCDTCPRAYHMVCLD----PDMEKAPEGKWSC 52
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 712 SKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMN 760
S ++D C +C G LL CD+C R +H+DC+ P IP G W C C +
Sbjct: 5 SSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 814 DFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC--CAD 861
DFC +++CD C R YH+ CL L+ +PKG W+C C D
Sbjct: 10 DFCSVCRKSGQLLMCDTCSRVYHLDCLD----PPLKTIPKGMWICPRCQD 55
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 714 ENDDLCGICMDGGD-----LLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNT 761
+ D +C ICMDG +L CD C A H +C +P IP G W CR+C+ +
Sbjct: 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 714 ENDDLCGICMDGGD-----LLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNT 761
+ D +C ICMDG +L CD C A H +C +P IP G W CR+C+ +
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 715 NDDLCGICMDGGDLLCCD--SCPRAFHIDCVSLPGIPSGTWHCRY 757
++D C C DGG+L+ CD CP+A+H+ C++L P G W C +
Sbjct: 14 HEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPW 58
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 718 LCGICMDGGD---LLCCDSCPRAFHIDCV--SLPGIPSGTWHCRYCM 759
+C +C G + LL CD C +HI C+ LP IP G W C C+
Sbjct: 18 ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 825 VILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC----CADCKR 864
++ CD C+ YH+ CL + L E+P+G W C A+CK+
Sbjct: 31 LLFCDGCDDNYHIFCL----LPPLPEIPRGIWRCPKCILAECKQ 70
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 718 LCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYC 758
+C +C GDL+ C+ C FH+DC +L +P W C C
Sbjct: 4 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 719 CGICMDGGD---LLCCDSCPRAFHIDCV--SLPGIPSGTWHCRYC 758
C +C G+ L+ CD C +AFH+ C+ +L +P G W C C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
Score = 36.6 bits (83), Expect = 0.076, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 816 CKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCA 860
C+ + +ILCD+C + +H+ CL+ L E+P G+W C A
Sbjct: 6 CRKKGEDDKLILCDECNKAFHLFCLR----PALYEVPDGEWQCPA 46
>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire (aire-phd2)
Length = 66
Score = 37.0 bits (84), Expect = 0.067, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 719 CGICMDGGDLLCCDSCPRAFHIDCVSLPGI--PSGTWHCRYC 758
CG+C DG D+L C C AFH C G P CR C
Sbjct: 15 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 56
>pdb|2JM1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
Length = 141
Score = 37.0 bits (84), Expect = 0.067, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 23/127 (18%)
Query: 641 GYFVRGEKFLVGYKKGFGILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHEL 700
G RGE L G + CT C +V+ Q ++ R P + + +
Sbjct: 1 GAMKRGEDGLHGI-----VSCTACGQQVNHFQKDS-----IYRHPSLQVLICKNCFKYYM 50
Query: 701 SIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCV-------SLPGI--PSG 751
S +S + S D+ C C +GG+L+CCD C AF C+ L I +
Sbjct: 51 SDDISRD----SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN 106
Query: 752 TWHCRYC 758
W+C C
Sbjct: 107 QWYCYIC 113
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 36.6 bits (83), Expect = 0.088, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 718 LCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPS-GTWHCRYCMN 760
LCG D L CD C AFHI C+ P +PS W+C C N
Sbjct: 10 LCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 55
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 718 LCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPS-GTWHCRYCMN 760
LCG D L CD C AFHI C+ P +PS W+C C N
Sbjct: 179 LCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
>pdb|3QL9|A Chain A, Monoclinic Complex Structure Of Atrx Add Bound To Histone
H3k9me3 Peptide
pdb|3QLA|A Chain A, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|D Chain D, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLC|A Chain A, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|B Chain B, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLN|A Chain A, Crystal Structure Of Atrx Add Domain In Free State
pdb|3QLN|B Chain B, Crystal Structure Of Atrx Add Domain In Free State
Length = 129
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 659 ILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDL 718
+ CT C +V+ Q ++ R P + + +S +S + S D+
Sbjct: 9 VSCTACGQQVNHFQKDS-----IYRHPSLQVLICKNCFKYYMSDDISRD----SDGMDEQ 59
Query: 719 CGICMDGGDLLCCDSCPRAFHIDCV-------SLPGI--PSGTWHCRYC 758
C C +GG+L+CCD C AF C+ L I + W+C C
Sbjct: 60 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC 108
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 718 LCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPS-GTWHCRYCMN 760
LCG D L CD C AFHI C+ P +PS W+C C N
Sbjct: 195 LCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 240
>pdb|2LD1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
pdb|2LBM|A Chain A, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
Length = 142
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 659 ILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDL 718
+ CT C +V+ Q ++ R P + + +S +S + S D+
Sbjct: 15 VSCTACGQQVNHFQKDS-----IYRHPSLQVLICKNCFKYYMSDDISRD----SDGMDEQ 65
Query: 719 CGICMDGGDLLCCDSCPRAFHIDCV-------SLPGI--PSGTWHCRYC 758
C C +GG+L+CCD C AF C+ L I + W+C C
Sbjct: 66 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYIC 114
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 718 LCGICMDGGDLLCCDSCPRAFHIDC--VSLPGIPSGTWHCRYC 758
+C +C GDL+ C+ C FH+DC +L +P W C C
Sbjct: 27 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 719 CGICMDGG----DLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYC 758
C C D G ++L CDSC R FH++C P +P G W C+ C
Sbjct: 62 CSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 825 VILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858
++ CD C+R +H+ C L +PKG W+C
Sbjct: 75 MLFCDSCDRGFHMECCD----PPLTRMPKGMWIC 104
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 719 CGICMDGG----DLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYC 758
C C D G ++L CDSC R FH++C P +P G W C+ C
Sbjct: 64 CSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 825 VILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858
++ CD C+R +H+ C L +PKG W+C
Sbjct: 77 MLFCDSCDRGFHMECCD----PPLTRMPKGMWIC 106
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 724 DGGDLLCCDSCPRAFHIDCVSLPGIP--SGTWHCRYCMNTFQKEK 766
DG ++ CD C +H CV + P W C C N +K+K
Sbjct: 29 DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 718 LCGICMDGGDLLCCDSCPRAFHIDCVSL--PGIPSGTWHCRYCM-NTFQKEKFV 768
+CG D G ++CCD C HIDC+ + IP T+ C C KE+ V
Sbjct: 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRNLDKERAV 84
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 718 LCGICMDGGDLLCCDSCPRAFHIDCVSLPGI--PSGTWHCRYCMNTFQKE 765
LCG + LL CD C R +H+ C++ P P G+W C C +++
Sbjct: 63 LCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 807 CVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858
C+ C+ C + ++ CD C+R YH+ CL + E P+G W C
Sbjct: 55 CIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLN----PPVAEPPEGSWSC 102
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 718 LCGICMDGGD---LLCCDSCPRAFHIDCVS--LPGIPSGTWHCRYC 758
+C C G+ +L CD+C + +H C+ + +P+ W C+ C
Sbjct: 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 793 CIRIVQTPDTELG-GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQEL 851
C+ I TP G C C+ CK +++CD C++ YH CL+ ++ +
Sbjct: 36 CLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ----PVMKSV 91
Query: 852 PKGKWLC 858
P W C
Sbjct: 92 PTNGWKC 98
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 825 VILCDQ--CEREY-HVGCLKDHGMEDLQELPKGKWLCCADCKRI 865
++ CD C E+ H GC+ L++ PKGKW C DCK I
Sbjct: 39 MVACDNPACPFEWFHYGCV------GLKQAPKGKWYCSKDCKEI 76
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 726 GDLLCCD--SCP-RAFHIDCVSLPGIPSGTWHC 755
G ++ CD +CP FH CV L P G W+C
Sbjct: 37 GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYC 69
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 726 GDLLCCDS--CP-RAFHIDCVSLPGIPSGTWHCRYCM 759
G+++ CD+ CP FH CV L P G W C C+
Sbjct: 20 GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCV 56
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 353 SLLQQKVELAKGSLSKDGGKRSDVTEVANDGVGGPVKQETVMKPRKVMRKFYSKLKNFLE 412
S L QK ELA+ + DG SD+T +A D GP+++ +KP +V S+++N
Sbjct: 300 SPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRE---LKPEQVKNMSASEMRNIRL 355
Query: 413 SGILEGM 419
S E +
Sbjct: 356 SDFTESL 362
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 726 GDLLCCDS--CP-RAFHIDCVSLPGIPSGTWHCRYC 758
G+++ CD+ CP FH CVSL P G W+C C
Sbjct: 22 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 57
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 808 VLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDH----GMEDLQELPKGKWLC 858
VLCR D C++R ++ + ++H K H G+ L+ +PKG+++C
Sbjct: 107 VLCRCSDHCRNRVVQKGL--------QFHFQVFKTHKKGWGLRTLEFIPKGRFVC 153
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 726 GDLLCCDS--CP-RAFHIDCVSLPGIPSGTWHCRYC 758
G+++ CD+ CP FH CVSL P G W+C C
Sbjct: 27 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 62
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 726 GDLLCCDS--CP-RAFHIDCVSLPGIPSGTWHCRYCMNTFQK 764
G+++ CD+ CP FH CV L P G W+C C ++
Sbjct: 17 GEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKR 58
>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
Autotransporter Espp
Length = 968
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 623 RMHKLVFEEGGLEDGAEV-----------GYFVRGEKFLVGYKKGFGILCTCCNSEVSP 670
R+ K V E G +GA++ G +GEK L+ ++ G G++ N ++P
Sbjct: 106 RLDKFVVETRGATEGADISLSKQQALERYGVNYKGEKKLIAFRAGSGVVSVKKNGRITP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,234,929
Number of Sequences: 62578
Number of extensions: 1225352
Number of successful extensions: 2892
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2799
Number of HSP's gapped (non-prelim): 84
length of query: 1087
length of database: 14,973,337
effective HSP length: 109
effective length of query: 978
effective length of database: 8,152,335
effective search space: 7972983630
effective search space used: 7972983630
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)