Query 001394
Match_columns 1087
No_of_seqs 431 out of 1842
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0956 PHD finger protein AF1 99.2 5.6E-12 1.2E-16 147.8 4.9 149 716-872 5-187 (900)
2 PRK10314 putative acyltransfer 99.1 9.8E-10 2.1E-14 111.0 12.4 115 924-1051 16-135 (153)
3 COG1246 ArgA N-acetylglutamate 99.0 4.4E-10 9.5E-15 114.0 7.2 89 963-1055 39-128 (153)
4 COG5141 PHD zinc finger-contai 99.0 6.1E-11 1.3E-15 135.2 0.9 126 713-852 190-345 (669)
5 PF13508 Acetyltransf_7: Acety 99.0 3.1E-09 6.7E-14 94.6 10.9 77 966-1047 3-79 (79)
6 KOG1244 Predicted transcriptio 99.0 2.2E-10 4.7E-15 123.5 2.1 83 657-762 245-332 (336)
7 PF00583 Acetyltransf_1: Acety 99.0 4.1E-09 8.9E-14 92.9 9.9 74 972-1046 2-83 (83)
8 PF15446 zf-PHD-like: PHD/FYVE 98.9 5.7E-10 1.2E-14 113.9 4.3 95 718-844 1-143 (175)
9 KOG4299 PHD Zn-finger protein 98.9 1.7E-09 3.6E-14 127.7 8.7 46 716-761 253-305 (613)
10 KOG0955 PHD finger protein BR1 98.9 4.8E-10 1E-14 140.0 3.5 120 712-847 215-367 (1051)
11 PF13673 Acetyltransf_10: Acet 98.9 1E-08 2.2E-13 95.8 10.7 74 966-1045 44-117 (117)
12 KOG0383 Predicted helicase [Ge 98.9 7.8E-10 1.7E-14 133.8 3.0 142 733-917 1-149 (696)
13 KOG1512 PHD Zn-finger protein 98.8 1.3E-09 2.8E-14 118.1 1.3 100 638-760 259-362 (381)
14 PTZ00330 acetyltransferase; Pr 98.7 5.2E-08 1.1E-12 94.8 10.7 83 967-1050 53-141 (147)
15 KOG0954 PHD finger protein [Ge 98.7 2.6E-09 5.6E-14 126.9 1.6 134 715-866 270-440 (893)
16 KOG1244 Predicted transcriptio 98.7 3.4E-09 7.4E-14 114.4 1.9 94 714-864 222-330 (336)
17 PRK10146 aminoalkylphosphonic 98.7 5.3E-08 1.1E-12 94.5 9.0 80 969-1049 50-137 (144)
18 PLN02825 amino-acid N-acetyltr 98.7 7.7E-08 1.7E-12 114.5 11.4 103 969-1075 410-514 (515)
19 KOG1512 PHD Zn-finger protein 98.7 7.1E-09 1.5E-13 112.5 2.2 91 715-863 257-361 (381)
20 PLN02706 glucosamine 6-phospha 98.7 1.3E-07 2.7E-12 93.2 10.5 82 967-1049 54-143 (150)
21 PRK07922 N-acetylglutamate syn 98.6 1.2E-07 2.5E-12 97.3 9.9 79 969-1050 48-127 (169)
22 PRK07757 acetyltransferase; Pr 98.6 1.1E-07 2.5E-12 93.7 9.6 82 970-1054 45-126 (152)
23 cd02169 Citrate_lyase_ligase C 98.6 8.6E-08 1.9E-12 107.3 9.6 74 970-1049 10-83 (297)
24 COG2153 ElaA Predicted acyltra 98.6 8.1E-08 1.8E-12 96.7 7.9 86 966-1052 50-138 (155)
25 PF13527 Acetyltransf_9: Acety 98.6 2.4E-07 5.3E-12 88.3 10.8 111 925-1048 10-127 (127)
26 PRK03624 putative acetyltransf 98.6 1.3E-07 2.8E-12 90.0 8.7 82 967-1050 46-130 (140)
27 TIGR01890 N-Ac-Glu-synth amino 98.6 2.4E-07 5.1E-12 108.2 11.0 85 970-1056 326-411 (429)
28 TIGR01575 rimI ribosomal-prote 98.5 5.8E-07 1.2E-11 84.7 9.9 80 969-1050 34-116 (131)
29 TIGR00124 cit_ly_ligase [citra 98.5 3.7E-07 8E-12 103.7 10.1 82 965-1052 30-111 (332)
30 PRK10975 TDP-fucosamine acetyl 98.5 6.3E-07 1.4E-11 93.0 10.0 83 966-1049 102-187 (194)
31 PRK05279 N-acetylglutamate syn 98.5 5.8E-07 1.3E-11 105.2 10.5 85 969-1055 337-422 (441)
32 TIGR02382 wecD_rffC TDP-D-fuco 98.5 7.5E-07 1.6E-11 92.4 10.1 80 970-1050 103-185 (191)
33 PRK12308 bifunctional arginino 98.4 6.7E-07 1.5E-11 108.9 10.0 82 969-1053 506-587 (614)
34 PRK09491 rimI ribosomal-protei 98.4 1.7E-06 3.7E-11 85.0 10.9 84 965-1050 39-125 (146)
35 TIGR03827 GNAT_ablB putative b 98.4 1.1E-06 2.5E-11 96.1 9.4 84 966-1050 158-245 (266)
36 PRK10140 putative acetyltransf 98.3 2.9E-06 6.3E-11 83.6 10.0 84 966-1051 51-142 (162)
37 PRK13688 hypothetical protein; 98.3 2.1E-06 4.5E-11 87.9 8.8 76 970-1051 49-134 (156)
38 PRK09831 putative acyltransfer 98.3 1.8E-06 3.9E-11 85.5 8.1 73 969-1052 56-128 (147)
39 KOG4299 PHD Zn-finger protein 98.3 4.9E-07 1.1E-11 107.4 4.2 49 806-863 255-303 (613)
40 PHA00673 acetyltransferase dom 98.3 5.4E-06 1.2E-10 85.0 10.8 84 966-1050 55-146 (154)
41 KOG4323 Polycomb-like PHD Zn-f 98.2 8.5E-07 1.8E-11 103.4 3.3 148 717-878 84-237 (464)
42 TIGR03448 mycothiol_MshD mycot 98.1 1.1E-05 2.3E-10 88.4 10.5 81 967-1050 47-128 (292)
43 TIGR03448 mycothiol_MshD mycot 98.1 9.3E-06 2E-10 88.8 9.6 85 965-1050 199-288 (292)
44 KOG3139 N-acetyltransferase [G 98.1 1.3E-05 2.9E-10 82.2 10.0 74 977-1051 68-147 (165)
45 TIGR02406 ectoine_EctA L-2,4-d 98.1 1E-05 2.2E-10 81.9 9.1 82 967-1049 40-127 (157)
46 COG0456 RimI Acetyltransferase 98.1 1.6E-05 3.5E-10 79.7 9.6 76 976-1052 72-156 (177)
47 PF13420 Acetyltransf_4: Acety 98.1 2.5E-05 5.4E-10 76.9 10.6 81 968-1050 52-139 (155)
48 TIGR03103 trio_acet_GNAT GNAT- 98.0 1.6E-05 3.5E-10 95.9 10.4 85 965-1050 122-217 (547)
49 PHA01807 hypothetical protein 98.0 1.3E-05 2.7E-10 82.1 8.0 81 967-1050 54-141 (153)
50 KOG0825 PHD Zn-finger protein 98.0 1.5E-06 3.2E-11 104.4 1.2 136 717-866 124-267 (1134)
51 cd04301 NAT_SF N-Acyltransfera 98.0 3E-05 6.5E-10 62.4 7.9 61 969-1029 2-64 (65)
52 PRK10514 putative acetyltransf 98.0 2.4E-05 5.2E-10 76.4 8.3 75 972-1054 56-130 (145)
53 KOG0383 Predicted helicase [Ge 98.0 2.8E-06 6.1E-11 103.7 2.1 50 714-763 45-96 (696)
54 KOG4443 Putative transcription 98.0 2.5E-06 5.3E-11 101.8 1.5 140 658-842 35-180 (694)
55 KOG3396 Glucosamine-phosphate 98.0 2.4E-05 5.2E-10 78.4 8.0 83 966-1049 53-143 (150)
56 PRK01346 hypothetical protein; 97.9 2.9E-05 6.3E-10 89.7 10.0 81 968-1051 49-137 (411)
57 PF08445 FR47: FR47-like prote 97.9 4.5E-05 9.7E-10 70.6 9.2 74 974-1049 6-81 (86)
58 PRK15130 spermidine N1-acetylt 97.9 7E-05 1.5E-09 76.7 10.2 81 968-1050 59-145 (186)
59 PRK10562 putative acetyltransf 97.9 4.9E-05 1.1E-09 74.9 8.4 76 969-1051 51-126 (145)
60 KOG1473 Nucleosome remodeling 97.9 3.6E-06 7.9E-11 104.3 0.5 128 713-865 341-479 (1414)
61 KOG4443 Putative transcription 97.8 6.2E-06 1.4E-10 98.5 2.1 101 715-871 17-127 (694)
62 PF13523 Acetyltransf_8: Acety 97.8 0.00013 2.8E-09 72.2 11.0 86 964-1050 46-141 (152)
63 TIGR01686 FkbH FkbH-like domai 97.8 6.2E-05 1.3E-09 84.9 9.6 82 965-1048 230-319 (320)
64 COG3393 Predicted acetyltransf 97.8 7.2E-05 1.6E-09 82.2 8.5 84 966-1050 177-262 (268)
65 TIGR03585 PseH pseudaminic aci 97.7 0.0002 4.2E-09 70.6 10.4 81 969-1052 54-140 (156)
66 TIGR01211 ELP3 histone acetylt 97.7 8.7E-05 1.9E-09 89.2 9.4 77 973-1050 421-516 (522)
67 PF00628 PHD: PHD-finger; Int 97.7 1.2E-05 2.6E-10 67.0 1.2 43 718-760 1-50 (51)
68 COG3153 Predicted acetyltransf 97.6 0.00031 6.7E-09 73.5 10.5 104 968-1081 48-156 (171)
69 PF13718 GNAT_acetyltr_2: GNAT 97.6 0.00033 7.1E-09 74.7 10.3 85 965-1050 26-176 (196)
70 smart00249 PHD PHD zinc finger 97.6 5.2E-05 1.1E-09 60.5 3.1 41 718-758 1-47 (47)
71 PRK10809 ribosomal-protein-S5- 97.5 0.00041 8.8E-09 71.7 9.9 83 966-1050 77-166 (194)
72 PF00628 PHD: PHD-finger; Int 97.5 2.5E-05 5.3E-10 65.1 -0.1 49 806-863 1-49 (51)
73 KOG0957 PHD finger protein [Ge 97.5 4.4E-05 9.6E-10 88.6 1.8 121 717-845 120-277 (707)
74 COG1247 Sortase and related ac 97.5 0.0007 1.5E-08 70.8 10.3 116 958-1078 44-167 (169)
75 smart00249 PHD PHD zinc finger 97.4 0.00011 2.3E-09 58.7 3.3 44 807-859 2-45 (47)
76 PRK10151 ribosomal-protein-L7/ 97.4 0.00085 1.9E-08 68.3 10.7 80 970-1051 71-156 (179)
77 PF13302 Acetyltransf_3: Acety 97.4 0.001 2.2E-08 64.0 10.4 79 966-1046 56-142 (142)
78 KOG3397 Acetyltransferases [Ge 97.3 0.00039 8.5E-09 72.3 6.5 86 968-1055 57-146 (225)
79 KOG1973 Chromatin remodeling p 97.2 0.00014 3.1E-09 80.9 1.7 44 717-760 220-267 (274)
80 KOG3216 Diamine acetyltransfer 97.0 0.0043 9.3E-08 63.8 10.1 121 922-1050 17-146 (163)
81 KOG0825 PHD Zn-finger protein 96.9 0.00038 8.1E-09 84.5 2.1 44 717-760 216-265 (1134)
82 COG5034 TNG2 Chromatin remodel 96.9 0.00043 9.4E-09 75.5 2.2 46 714-760 219-269 (271)
83 PF01342 SAND: SAND domain; I 96.8 0.00015 3.2E-09 67.4 -1.9 43 657-702 35-77 (82)
84 smart00258 SAND SAND domain. 96.8 0.00076 1.6E-08 61.5 2.2 46 656-702 20-68 (73)
85 PF13831 PHD_2: PHD-finger; PD 96.7 0.00034 7.3E-09 55.6 -0.4 34 726-759 2-36 (36)
86 COG5034 TNG2 Chromatin remodel 96.5 0.001 2.3E-08 72.6 1.9 45 805-864 222-269 (271)
87 KOG1973 Chromatin remodeling p 96.5 0.00093 2E-08 74.6 1.3 35 823-864 230-267 (274)
88 COG3053 CitC Citrate lyase syn 96.5 0.007 1.5E-07 67.7 8.0 79 967-1051 37-116 (352)
89 PF08444 Gly_acyl_tr_C: Aralky 96.5 0.0047 1E-07 58.5 5.6 74 971-1049 4-79 (89)
90 PF12746 GNAT_acetyltran: GNAT 96.2 0.029 6.2E-07 62.7 10.5 76 972-1049 171-246 (265)
91 COG0454 WecD Histone acetyltra 96.1 0.0073 1.6E-07 51.3 4.2 44 996-1045 87-130 (156)
92 COG1444 Predicted P-loop ATPas 95.9 0.0098 2.1E-07 74.1 5.8 59 991-1051 532-592 (758)
93 PF14542 Acetyltransf_CG: GCN5 95.9 0.032 7E-07 51.2 7.8 66 970-1038 3-68 (78)
94 KOG2488 Acetyltransferase (GNA 95.9 0.024 5.2E-07 60.3 7.7 84 966-1050 93-182 (202)
95 PF12568 DUF3749: Acetyltransf 95.9 0.051 1.1E-06 54.7 9.6 80 965-1049 39-124 (128)
96 COG1670 RimL Acetyltransferase 95.8 0.055 1.2E-06 53.8 9.9 88 965-1054 65-162 (187)
97 KOG0957 PHD finger protein [Ge 95.8 0.0032 7E-08 73.8 1.1 47 805-862 545-595 (707)
98 COG2388 Predicted acetyltransf 95.7 0.024 5.2E-07 54.7 6.4 66 964-1033 15-80 (99)
99 KOG4144 Arylalkylamine N-acety 95.6 0.01 2.2E-07 61.2 3.5 61 989-1050 100-161 (190)
100 cd04718 BAH_plant_2 BAH, or Br 95.2 0.01 2.2E-07 60.9 1.9 25 737-761 1-27 (148)
101 KOG0955 PHD finger protein BR1 94.9 0.014 3.1E-07 74.8 2.8 54 803-867 218-271 (1051)
102 KOG4323 Polycomb-like PHD Zn-f 94.9 0.0091 2E-07 70.6 0.9 43 719-761 171-224 (464)
103 KOG3138 Predicted N-acetyltran 94.9 0.024 5.1E-07 60.4 3.7 61 990-1051 89-153 (187)
104 cd04718 BAH_plant_2 BAH, or Br 94.6 0.019 4.1E-07 59.0 2.1 26 834-864 1-26 (148)
105 KOG0956 PHD finger protein AF1 94.3 0.021 4.5E-07 69.5 1.9 50 804-864 5-56 (900)
106 smart00258 SAND SAND domain. 94.1 0.051 1.1E-06 49.9 3.6 50 442-493 19-69 (73)
107 TIGR03694 exosort_acyl putativ 94.0 0.39 8.5E-06 52.9 10.8 123 923-1050 17-200 (241)
108 COG4552 Eis Predicted acetyltr 93.7 0.093 2E-06 60.4 5.4 83 961-1050 36-127 (389)
109 PF13480 Acetyltransf_6: Acety 93.3 0.6 1.3E-05 44.8 9.8 66 966-1032 71-136 (142)
110 KOG1245 Chromatin remodeling c 93.3 0.024 5.3E-07 75.2 -0.0 56 801-867 1105-1160(1404)
111 PF06852 DUF1248: Protein of u 93.2 0.5 1.1E-05 50.4 9.5 82 967-1050 48-137 (181)
112 KOG3235 Subunit of the major N 93.1 0.27 5.8E-06 51.4 7.1 81 970-1050 45-135 (193)
113 PF01342 SAND: SAND domain; I 92.9 0.025 5.4E-07 52.8 -0.5 56 436-493 17-78 (82)
114 KOG1245 Chromatin remodeling c 92.6 0.028 6E-07 74.7 -0.9 48 714-761 1106-1158(1404)
115 COG5141 PHD zinc finger-contai 92.1 0.063 1.4E-06 63.4 1.3 47 805-862 194-240 (669)
116 KOG3234 Acetyltransferase, (GN 92.0 0.2 4.4E-06 52.1 4.7 59 989-1048 68-129 (173)
117 PF13832 zf-HC5HC2H_2: PHD-zin 91.3 0.15 3.3E-06 49.0 2.8 33 805-845 56-90 (110)
118 COG1243 ELP3 Histone acetyltra 90.7 0.19 4.2E-06 59.6 3.4 51 999-1050 459-509 (515)
119 PF00765 Autoind_synth: Autoin 89.6 1.9 4.2E-05 45.8 9.5 89 957-1047 36-152 (182)
120 KOG0954 PHD finger protein [Ge 89.5 0.14 3E-06 63.2 0.9 51 804-865 271-321 (893)
121 PRK13834 putative autoinducer 88.8 2.4 5.1E-05 45.9 9.7 118 923-1047 16-162 (207)
122 COG3981 Predicted acetyltransf 85.4 1.6 3.4E-05 46.3 5.7 66 966-1033 70-140 (174)
123 cd04264 DUF619-NAGS DUF619 dom 83.3 2.4 5.1E-05 41.2 5.6 48 972-1019 14-63 (99)
124 PF07897 DUF1675: Protein of u 81.8 3.4 7.4E-05 47.0 6.9 68 405-479 209-283 (284)
125 PF02474 NodA: Nodulation prot 78.7 3 6.6E-05 44.3 4.8 53 990-1044 85-137 (196)
126 PF13771 zf-HC5HC2H: PHD-like 78.2 0.78 1.7E-05 42.5 0.4 48 805-860 37-88 (90)
127 TIGR03019 pepcterm_femAB FemAB 77.2 6.8 0.00015 44.6 7.6 81 969-1050 198-281 (330)
128 PF13831 PHD_2: PHD-finger; PD 76.0 0.58 1.3E-05 37.4 -0.9 30 823-858 2-32 (36)
129 PF07227 DUF1423: Protein of u 73.7 2.9 6.4E-05 49.9 3.6 63 807-873 131-203 (446)
130 PF13880 Acetyltransf_13: ESCO 73.5 2.4 5.2E-05 38.9 2.2 28 992-1019 7-34 (70)
131 cd04265 DUF619-NAGS-U DUF619 d 73.0 6.6 0.00014 38.2 5.2 48 972-1019 15-63 (99)
132 COG3818 Predicted acetyltransf 71.7 9.6 0.00021 39.1 6.1 59 998-1056 92-154 (167)
133 PF14446 Prok-RING_1: Prokaryo 66.0 3.2 6.8E-05 36.4 1.2 28 717-744 6-37 (54)
134 PF04377 ATE_C: Arginine-tRNA- 65.8 24 0.00053 35.8 7.7 63 965-1028 38-100 (128)
135 KOG2752 Uncharacterized conser 65.8 4.8 0.0001 46.2 2.9 110 717-843 56-167 (345)
136 KOG2036 Predicted P-loop ATPas 64.2 5.3 0.00012 50.0 3.1 52 945-1019 592-643 (1011)
137 KOG4135 Predicted phosphogluco 63.8 14 0.00031 38.6 5.6 58 990-1048 107-168 (185)
138 PF12861 zf-Apc11: Anaphase-pr 63.3 2.7 5.9E-05 39.9 0.4 47 715-762 20-81 (85)
139 PF14446 Prok-RING_1: Prokaryo 62.0 3.9 8.5E-05 35.9 1.1 36 805-845 6-41 (54)
140 COG5628 Predicted acetyltransf 60.5 31 0.00067 35.2 7.1 85 968-1057 39-131 (143)
141 PF07897 DUF1675: Protein of u 58.2 5.7 0.00012 45.3 1.9 32 658-689 252-283 (284)
142 KOG1081 Transcription factor N 56.6 7.7 0.00017 47.0 2.7 48 712-760 85-132 (463)
143 PRK00756 acyltransferase NodA; 55.9 18 0.0004 38.5 4.9 40 989-1029 84-123 (196)
144 KOG1473 Nucleosome remodeling 54.9 6.6 0.00014 51.3 1.8 45 805-863 345-389 (1414)
145 PF11793 FANCL_C: FANCL C-term 52.7 7.3 0.00016 35.4 1.3 46 717-762 3-65 (70)
146 PRK14852 hypothetical protein; 52.7 38 0.00083 44.7 8.0 65 987-1051 118-182 (989)
147 PF01853 MOZ_SAS: MOZ/SAS fami 52.6 34 0.00074 37.1 6.4 87 922-1023 25-113 (188)
148 PLN03238 probable histone acet 51.8 21 0.00044 41.0 4.8 84 923-1023 101-188 (290)
149 PF15446 zf-PHD-like: PHD/FYVE 50.7 7.2 0.00016 41.4 1.0 34 807-843 2-35 (175)
150 KOG4628 Predicted E3 ubiquitin 50.4 10 0.00022 44.4 2.3 46 717-763 230-278 (348)
151 KOG2535 RNA polymerase II elon 49.6 21 0.00045 41.8 4.5 50 1001-1051 498-548 (554)
152 PF13444 Acetyltransf_5: Acety 47.5 37 0.0008 32.4 5.2 25 988-1012 76-100 (101)
153 PTZ00064 histone acetyltransfe 45.6 24 0.00053 43.1 4.4 84 922-1022 329-416 (552)
154 KOG2747 Histone acetyltransfer 45.3 21 0.00046 42.4 3.8 73 922-1014 207-284 (396)
155 PF12261 T_hemolysin: Thermost 44.6 62 0.0013 34.8 6.8 55 989-1048 86-140 (179)
156 COG3916 LasI N-acyl-L-homoseri 44.5 1E+02 0.0023 34.0 8.6 81 964-1045 51-158 (209)
157 KOG1829 Uncharacterized conser 43.0 8.4 0.00018 47.8 0.2 49 807-868 514-562 (580)
158 PLN03239 histone acetyltransfe 42.2 35 0.00075 40.2 4.9 84 923-1023 159-246 (351)
159 PF13639 zf-RING_2: Ring finge 41.8 2.5 5.5E-05 34.3 -3.1 41 717-759 1-44 (44)
160 PRK01305 arginyl-tRNA-protein 41.7 1.2E+02 0.0027 34.0 8.8 57 971-1028 149-205 (240)
161 KOG1701 Focal adhesion adaptor 41.0 11 0.00023 45.1 0.6 35 806-842 396-430 (468)
162 KOG3612 PHD Zn-finger protein 39.2 22 0.00048 43.6 2.9 47 714-760 58-107 (588)
163 PLN00104 MYST -like histone ac 38.6 33 0.00071 41.6 4.1 79 923-1018 252-334 (450)
164 PF13901 DUF4206: Domain of un 37.8 28 0.0006 37.8 3.1 71 474-546 102-198 (202)
165 PF13901 DUF4206: Domain of un 37.7 23 0.0005 38.4 2.4 35 806-841 154-188 (202)
166 PF13832 zf-HC5HC2H_2: PHD-zin 37.1 17 0.00038 35.0 1.3 30 715-744 54-86 (110)
167 PF04958 AstA: Arginine N-succ 35.1 49 0.0011 38.9 4.7 81 965-1046 58-184 (342)
168 KOG1428 Inhibitor of type V ad 34.1 11 0.00023 50.5 -0.9 52 712-763 3482-3544(3738)
169 PF01233 NMT: Myristoyl-CoA:pr 34.0 1.2E+02 0.0025 32.4 6.7 47 980-1026 98-146 (162)
170 PF13771 zf-HC5HC2H: PHD-like 33.1 22 0.00047 32.9 1.2 29 716-744 36-67 (90)
171 TIGR03244 arg_catab_AstA argin 32.7 74 0.0016 37.4 5.6 49 965-1013 54-140 (336)
172 TIGR03245 arg_AOST_alph argini 31.2 76 0.0016 37.3 5.3 49 965-1013 55-141 (336)
173 TIGR03243 arg_catab_AOST argin 31.1 78 0.0017 37.2 5.4 50 965-1014 54-141 (335)
174 KOG0804 Cytoplasmic Zn-finger 30.5 22 0.00048 42.7 1.0 42 715-760 174-219 (493)
175 PRK10456 arginine succinyltran 30.3 77 0.0017 37.4 5.2 49 965-1013 56-142 (344)
176 KOG1246 DNA-binding protein ju 28.9 59 0.0013 42.7 4.5 47 715-761 154-204 (904)
177 PF11793 FANCL_C: FANCL C-term 28.4 28 0.00061 31.6 1.1 34 806-842 4-39 (70)
178 KOG1632 Uncharacterized PHD Zn 28.1 33 0.00072 40.3 1.8 44 824-871 74-119 (345)
179 KOG1734 Predicted RING-contain 24.8 23 0.0005 40.2 -0.2 48 713-760 221-278 (328)
180 PF10497 zf-4CXXC_R1: Zinc-fin 24.0 21 0.00046 35.0 -0.6 49 805-860 8-66 (105)
181 KOG2779 N-myristoyl transferas 23.9 2.1E+02 0.0046 34.1 7.1 139 904-1050 80-241 (421)
182 KOG1701 Focal adhesion adaptor 23.7 13 0.00028 44.4 -2.5 35 717-761 275-311 (468)
183 PHA02929 N1R/p28-like protein; 23.0 31 0.00068 38.6 0.4 46 715-762 173-226 (238)
184 cd00162 RING RING-finger (Real 23.0 20 0.00044 27.6 -0.8 41 719-760 2-43 (45)
185 PF12678 zf-rbx1: RING-H2 zinc 22.7 17 0.00036 33.3 -1.5 26 732-759 48-73 (73)
186 PHA02825 LAP/PHD finger-like p 21.0 28 0.0006 36.9 -0.5 49 714-762 6-58 (162)
187 PHA02862 5L protein; Provision 20.3 24 0.00052 36.8 -1.1 47 716-762 2-52 (156)
No 1
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.23 E-value=5.6e-12 Score=147.77 Aligned_cols=149 Identities=24% Similarity=0.486 Sum_probs=99.1
Q ss_pred cccccccccC-----CceEecCC--CCCcccccccCCCCCCCCCccccccccc-----------cccccee--------c
Q 001394 716 DDLCGICMDG-----GDLLCCDS--CPRAFHIDCVSLPGIPSGTWHCRYCMNT-----------FQKEKFV--------E 769 (1087)
Q Consensus 716 dd~C~VC~dg-----GeLl~CD~--CprafH~~CL~l~~vP~G~W~C~~C~~~-----------~~kek~v--------~ 769 (1087)
..-|.||.|. .-|++||+ |.-+.|+.|+++-++|.|.|||+.|... .+++... +
T Consensus 5 VGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWA 84 (900)
T KOG0956|consen 5 VGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWA 84 (900)
T ss_pred ccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCce
Confidence 4569999974 37999997 9999999999999999999999999632 2333332 3
Q ss_pred cccccccc--ccccccccccccccceeeecccCC--CCCCccccccCCCCCCCCCCCcceeccC--CCCccCCCCCCCCC
Q 001394 770 YNANARAA--GRIEGVDPFAQMVSRCIRIVQTPD--TELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKDH 843 (1087)
Q Consensus 770 ~~~na~aa--GrieGvdpieqi~kRCiRivk~~d--~e~g~C~vCk~~dfsks~f~~~tLL~CD--qCeraYHv~CL~~~ 843 (1087)
|..+++.. .++..+-.+|.| +++.+. .-...||||.+-+... ...-+.++.|+ .|.++|||+|....
T Consensus 85 HVVCALYIPEVrFgNV~TMEPI------iLq~VP~dRfnKtCYIC~E~Grpn-kA~~GACMtCNKs~CkqaFHVTCAQ~~ 157 (900)
T KOG0956|consen 85 HVVCALYIPEVRFGNVHTMEPI------ILQDVPHDRFNKTCYICNEEGRPN-KAAKGACMTCNKSGCKQAFHVTCAQRA 157 (900)
T ss_pred EEEEEeeccceeecccccccce------eeccCchhhhcceeeeecccCCcc-ccccccceecccccchhhhhhhHhhhh
Confidence 44444332 222222223332 222222 2236799999764322 12246799998 79999999999988
Q ss_pred CCCCcccC-CCCC-cccCCCchhhHHHHHHH
Q 001394 844 GMEDLQEL-PKGK-WLCCADCKRINLALQKL 872 (1087)
Q Consensus 844 gm~~Lkel-P~g~-WFC~~~C~~I~~~LqkL 872 (1087)
|+...++. -.++ -|| ..|+..+.+|.+-
T Consensus 158 GLLCEE~gn~~dNVKYC-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 158 GLLCEEEGNISDNVKYC-GYCKYHFSKLKKS 187 (900)
T ss_pred ccceeccccccccceec-hhHHHHHHHhhcC
Confidence 87544431 1122 477 7999999988864
No 2
>PRK10314 putative acyltransferase; Provisional
Probab=99.08 E-value=9.8e-10 Score=110.99 Aligned_cols=115 Identities=18% Similarity=0.100 Sum_probs=88.3
Q ss_pred HHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCccee--ceEEEEEEeCCEEEEEEEEEEecC--ceEEEeeeeec
Q 001394 924 LLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYH--GMYCAILTVNQVVVSAGIFRIFGQ--ELAELPLVATS 999 (1087)
Q Consensus 924 ~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~--Gfy~~VL~~~~~vVsaA~lri~g~--~~AEiplVAT~ 999 (1087)
.+..|+.|-++.|-+= -+.+ |. ++...|.. .++ +++..++++||+|+++..+. ..++|.+|||+
T Consensus 16 ~~~~~~~lR~~VF~~e----q~~~------~~-e~D~~d~~~~~~h-~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~ 83 (153)
T PRK10314 16 QLYALLQLRCAVFVVE----QNCP------YQ-DIDGDDLTGDNRH-ILGWKNDELVAYARILKSDDDLEPVVIGRVIVS 83 (153)
T ss_pred HHHHHHHHHHHHhhhh----cCCC------cc-ccCCCCCCCCcEE-EEEEECCEEEEEEEEecCCCCCCCEEEEEEEEC
Confidence 4678888888888321 1111 21 23333331 233 34567899999999987543 36899999999
Q ss_pred cCcccCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcEEcCHH
Q 001394 1000 NDCQGQGYFQSLFCCIEKLLGFL-NVKTLVLPSASEAQAIWTNKFGFSMMTEE 1051 (1087)
Q Consensus 1000 ~~~RgQG~gr~L~~aIE~~L~~l-gV~~LvLpA~~eA~~~wt~kfGF~~i~~~ 1051 (1087)
++|||||+|++||..+++.++.. +...++|.|...|++||.+ |||.++++.
T Consensus 84 ~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~~~g~~ 135 (153)
T PRK10314 84 EALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFIPVTEV 135 (153)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCEECCCc
Confidence 99999999999999999998875 7889999999999999999 999999873
No 3
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.02 E-value=4.4e-10 Score=113.97 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=77.4
Q ss_pred eeceEEEEEEeCCEEEEEEEEE-EecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHh
Q 001394 963 YHGMYCAILTVNQVVVSAGIFR-IFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTN 1041 (1087)
Q Consensus 963 f~Gfy~~VL~~~~~vVsaA~lr-i~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~ 1041 (1087)
+..|+.+ +.+|.+||||.++ +.+.+++||.-|||+|+|||+|+|..|+..|+..++.+|++++++.+. . .+-|+.
T Consensus 39 i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F~ 114 (153)
T COG1246 39 IDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFFA 114 (153)
T ss_pred Hhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHHH
Confidence 4455544 8899999999999 789999999999999999999999999999999999999999999985 2 445666
Q ss_pred ccCcEEcCHHHHHh
Q 001394 1042 KFGFSMMTEEEQNK 1055 (1087)
Q Consensus 1042 kfGF~~i~~~e~~~ 1055 (1087)
++||+.++..++..
T Consensus 115 ~~GF~~vd~~~LP~ 128 (153)
T COG1246 115 ERGFTRVDKDELPE 128 (153)
T ss_pred HcCCeECccccCCH
Confidence 69999999966554
No 4
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=99.02 E-value=6.1e-11 Score=135.23 Aligned_cols=126 Identities=29% Similarity=0.594 Sum_probs=86.6
Q ss_pred ccccccccccccC-----CceEecCCCCCcccccccCCCCCCCCCccccccccc--------cc--c--------cceec
Q 001394 713 KENDDLCGICMDG-----GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNT--------FQ--K--------EKFVE 769 (1087)
Q Consensus 713 ~endd~C~VC~dg-----GeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~--------~~--k--------ek~v~ 769 (1087)
++-|+.|.+|... ..+++||+|+.+.|+.|+|++.+|+|.|+|+.|... ++ . ...+.
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~ 269 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWG 269 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchH
Confidence 3467789998743 469999999999999999999999999999999632 11 1 12234
Q ss_pred ccccccccc-----cccccccccccccceeeecccCCCCCCccccccCCCCCCCCCCCcceeccC--CCCccCCCCCCCC
Q 001394 770 YNANARAAG-----RIEGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKD 842 (1087)
Q Consensus 770 ~~~na~aaG-----rieGvdpieqi~kRCiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CD--qCeraYHv~CL~~ 842 (1087)
|+.+|.|.- ...-.|||+.+..-- .......|.+|+.. .|+.++|. .|-++||++|++.
T Consensus 270 H~iCA~~~pelsF~~l~~~dpI~~i~sVs------~srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArr 335 (669)
T COG5141 270 HVICAMFNPELSFGHLLSKDPIDNIASVS------SSRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARR 335 (669)
T ss_pred hHhHHHhcchhccccccccchhhhhcccc------hhhHhheeeEEccc--------Ccceeeecccchhhhhhhhhhhh
Confidence 555555432 222334443332100 00112579999984 47999998 5999999999999
Q ss_pred CCCCCcccCC
Q 001394 843 HGMEDLQELP 852 (1087)
Q Consensus 843 ~gm~~LkelP 852 (1087)
.|..++..+.
T Consensus 336 ag~f~~~~~s 345 (669)
T COG5141 336 AGYFDLNIYS 345 (669)
T ss_pred cchhhhhhhc
Confidence 9887765443
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.00 E-value=3.1e-09 Score=94.59 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=67.1
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1045 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF 1045 (1087)
-+.++++.++++||++.+...++ .+.|..+||+|+|||||+|+.||..+.+.+.. ..++|.+.+.+.+||.+ +||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcC
Confidence 35677899999999999966664 99999999999999999999999999888854 56788888999999999 999
Q ss_pred EE
Q 001394 1046 SM 1047 (1087)
Q Consensus 1046 ~~ 1047 (1087)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.95 E-value=2.2e-10 Score=123.47 Aligned_cols=83 Identities=29% Similarity=0.705 Sum_probs=71.3
Q ss_pred cceEecCCCCccCchhhhhccCcccccCCccceeccCCcchhhhhhhhccCCCCCCcccccccccccc---CCceEecCC
Q 001394 657 FGILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMD---GGDLLCCDS 733 (1087)
Q Consensus 657 ~GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I~~snG~SL~dl~~~l~k~~k~s~~endd~C~VC~d---gGeLl~CD~ 733 (1087)
+.|.|+.|++.-|||+....+.+...-+.|+|.+. ....|.+|+. ..+|+|||.
T Consensus 245 elvscsdcgrsghpsclqft~nm~~avk~yrwqci-----------------------eck~csicgtsenddqllfcdd 301 (336)
T KOG1244|consen 245 ELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCI-----------------------ECKYCSICGTSENDDQLLFCDD 301 (336)
T ss_pred hhcchhhcCCCCCcchhhhhHHHHHHHHhheeeee-----------------------ecceeccccCcCCCceeEeecc
Confidence 79999999999999998888888777677877765 4578999984 468999999
Q ss_pred CCCcccccccCCC--CCCCCCcccccccccc
Q 001394 734 CPRAFHIDCVSLP--GIPSGTWHCRYCMNTF 762 (1087)
Q Consensus 734 CprafH~~CL~l~--~vP~G~W~C~~C~~~~ 762 (1087)
|+|+||++||.++ ..|+|.|+|..|...+
T Consensus 302 cdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 302 CDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred cCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 9999999999877 6789999999997543
No 7
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.95 E-value=4.1e-09 Score=92.85 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=67.7
Q ss_pred EeCCEEEEEEEEEEecC-----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhcc
Q 001394 972 TVNQVVVSAGIFRIFGQ-----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNKF 1043 (1087)
Q Consensus 972 ~~~~~vVsaA~lri~g~-----~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~wt~kf 1043 (1087)
+.+|++||++.+++... ..+.|..++|+++|||||+|+.||+.+++.++..|+..|++... ..+..||.+ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 67999999999999876 59999999999999999999999999999999999999998665 456699998 9
Q ss_pred CcE
Q 001394 1044 GFS 1046 (1087)
Q Consensus 1044 GF~ 1046 (1087)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 8
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.94 E-value=5.7e-10 Score=113.86 Aligned_cols=95 Identities=22% Similarity=0.562 Sum_probs=64.4
Q ss_pred ccccccc------CCceEecCCCCCcccccccCCCC--------CCCCC--cccccccccccccceeccccccccccccc
Q 001394 718 LCGICMD------GGDLLCCDSCPRAFHIDCVSLPG--------IPSGT--WHCRYCMNTFQKEKFVEYNANARAAGRIE 781 (1087)
Q Consensus 718 ~C~VC~d------gGeLl~CD~CprafH~~CL~l~~--------vP~G~--W~C~~C~~~~~kek~v~~~~na~aaGrie 781 (1087)
.|.+|+. .|.|++|++|..+||+.|||+.. +.++. .+|++|....++...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~-------------- 66 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDP-------------- 66 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccC--------------
Confidence 3777852 47899999999999999999653 23333 678888764433211
Q ss_pred ccccccccccceeeecccCCCCCCccccccCCCCCCCCCC--------------------------------CcceeccC
Q 001394 782 GVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFG--------------------------------RRTVILCD 829 (1087)
Q Consensus 782 Gvdpieqi~kRCiRivk~~d~e~g~C~vCk~~dfsks~f~--------------------------------~~tLL~CD 829 (1087)
....++.|..|+..+.....|+ ++.|++|.
T Consensus 67 ------------------~aP~~~~C~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~ 128 (175)
T PF15446_consen 67 ------------------RAPHHGMCQQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCT 128 (175)
T ss_pred ------------------CCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecC
Confidence 1223344555555554444443 33699999
Q ss_pred CCCccCCCCCCCCCC
Q 001394 830 QCEREYHVGCLKDHG 844 (1087)
Q Consensus 830 qCeraYHv~CL~~~g 844 (1087)
.|.|+||+.+|++.+
T Consensus 129 ~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 129 SCHRAWHFEHLPPPS 143 (175)
T ss_pred CccceeehhhCCCCc
Confidence 999999999999863
No 9
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.93 E-value=1.7e-09 Score=127.72 Aligned_cols=46 Identities=43% Similarity=1.234 Sum_probs=41.5
Q ss_pred cccccccccCCce---EecCCCCCcccccccCCC----CCCCCCccccccccc
Q 001394 716 DDLCGICMDGGDL---LCCDSCPRAFHIDCVSLP----GIPSGTWHCRYCMNT 761 (1087)
Q Consensus 716 dd~C~VC~dgGeL---l~CD~CprafH~~CL~l~----~vP~G~W~C~~C~~~ 761 (1087)
.++|..|+..|.. +|||+||++||+.||.|| .+|.|.|+|+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999998866 999999999999999877 689999999999864
No 10
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.92 E-value=4.8e-10 Score=140.02 Aligned_cols=120 Identities=28% Similarity=0.623 Sum_probs=87.8
Q ss_pred CccccccccccccC-----CceEecCCCCCcccccccCCCCCCCCCccccccccccccc------------------cee
Q 001394 712 SKENDDLCGICMDG-----GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKE------------------KFV 768 (1087)
Q Consensus 712 ~~endd~C~VC~dg-----GeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~~ke------------------k~v 768 (1087)
..+.|..|.||.++ ..+++||.|+.++|+.|+|.+.+|+|.|+|+.|....+.. +-+
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCce
Confidence 34677899999976 4799999999999999999999999999999997543321 233
Q ss_pred cccccccccccc--------cccccccccccceeeecccCCCCCCccccccCCCCCCCCCCCcceeccC--CCCccCCCC
Q 001394 769 EYNANARAAGRI--------EGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVG 838 (1087)
Q Consensus 769 ~~~~na~aaGri--------eGvdpieqi~kRCiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CD--qCeraYHv~ 838 (1087)
.|..+++|...+ ++++.++.+... .-...|++|+..+ .+++++|. .|-.+||++
T Consensus 295 ~Hv~caiwipev~F~nt~~~E~I~~i~~i~~a---------RwkL~cy~cK~~~-------~gaciqcs~~~c~~a~hvt 358 (1051)
T KOG0955|consen 295 AHVVCAIWIPEVSFANTVFLEPIDSIENIPPA---------RWKLTCYICKQKG-------LGACIQCSKANCYTAFHVT 358 (1051)
T ss_pred eeeehhhcccccccccchhhccccchhcCcHh---------hhhceeeeeccCC-------CCcceecchhhhhhhhhhh
Confidence 566666664432 233333333211 1235799999853 47899998 699999999
Q ss_pred CCCCCCCCC
Q 001394 839 CLKDHGMED 847 (1087)
Q Consensus 839 CL~~~gm~~ 847 (1087)
|.+..|+..
T Consensus 359 ca~~agl~m 367 (1051)
T KOG0955|consen 359 CARRAGLYM 367 (1051)
T ss_pred hHhhcCceE
Confidence 999988643
No 11
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.89 E-value=1e-08 Score=95.80 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=65.1
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1045 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF 1045 (1087)
...+|++.++++||.+.++ .-++|..++|+|+|||+|+|++||..+++.++. |++.|.+.+...|.+||.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 4567789999999999986 345699999999999999999999999999988 9999999999999999999 998
No 12
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.87 E-value=7.8e-10 Score=133.84 Aligned_cols=142 Identities=25% Similarity=0.507 Sum_probs=96.6
Q ss_pred CCCCcccccccCCC--CCCCCCcccccccccccccceecccccccccccccccccccccccceeeecccCCCCCCccccc
Q 001394 733 SCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPDTELGGCVLC 810 (1087)
Q Consensus 733 ~CprafH~~CL~l~--~vP~G~W~C~~C~~~~~kek~v~~~~na~aaGrieGvdpieqi~kRCiRivk~~d~e~g~C~vC 810 (1087)
.|+|.||..|+.+. ..|+++|.|+.|....... +..+ +. -...+..+|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~---------------~~~~---~~---------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQV---------------EAKD---DD---------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccc---------------cccc---CC---------cchhhhhhhhhh
Confidence 48999999999843 5568999999997421100 0000 00 123455789999
Q ss_pred cCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCc--hhhHHHHHHHhhcCCcCC--C-Cchh
Q 001394 811 RGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADC--KRINLALQKLVDRGEEKL--P-ETSL 885 (1087)
Q Consensus 811 k~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C--~~I~~~LqkLVarg~e~L--p-dsll 885 (1087)
.. .++++.||.|+.+||..|+. +++...|.+.|.|+ .| +....+..+++.|.+.+. + +...
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~----~pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLG----PPLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccC----CCCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCc
Confidence 97 36899999999999999998 46778888889997 55 333446778888644433 3 2222
Q ss_pred hhhhcccccCCCCccccccceeeeecCCccCC
Q 001394 886 DVIKKKHEESGSDNAVDFDVRWRVLRGKKVDA 917 (1087)
Q Consensus 886 ~~IkkK~eekg~e~~~e~dVkWqlLSy~~~s~ 917 (1087)
+.+... ..-....++++++|++++|+||.|
T Consensus 120 ~~~~~~--~~~~~~~re~~vk~qg~s~~~c~~ 149 (696)
T KOG0383|consen 120 GVISPR--RSNGIVEREFFVKWQGLSYWHCSW 149 (696)
T ss_pred CccCCc--ccccchhhhcccccccCCccchhH
Confidence 222111 112346789999999999999997
No 13
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.80 E-value=1.3e-09 Score=118.09 Aligned_cols=100 Identities=25% Similarity=0.534 Sum_probs=83.7
Q ss_pred ceeeEeecCeeeecceEeccceEecCCCCccCchhhhhccCcccccCCccceeccCCcchhhhhhhhccCCCCCCccccc
Q 001394 638 AEVGYFVRGEKFLVGYKKGFGILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDD 717 (1087)
Q Consensus 638 ~~v~Y~~kGq~lL~G~k~~~GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I~~snG~SL~dl~~~l~k~~k~s~~endd 717 (1087)
++.+.+.+||..+.-.+..+-|+|+.|....||++.+....+.+.-+.|.|.++ ...
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~-----------------------~C~ 315 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCS-----------------------SCE 315 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhc-----------------------ccH
Confidence 455566667666555667799999999999999999998888777777887765 456
Q ss_pred cccccccC---CceEecCCCCCcccccccCCCCCCCCCcccc-cccc
Q 001394 718 LCGICMDG---GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCR-YCMN 760 (1087)
Q Consensus 718 ~C~VC~dg---GeLl~CD~CprafH~~CL~l~~vP~G~W~C~-~C~~ 760 (1087)
.|.||+.+ .+++|||.|+|+||..|+|+..+|.|.|.|. .|..
T Consensus 316 lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhhccCCcccchheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 89999975 5899999999999999999999999999997 5653
No 14
>PTZ00330 acetyltransferase; Provisional
Probab=98.75 E-value=5.2e-08 Score=94.83 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=72.3
Q ss_pred EEEEEEeCCEEEEEEEEEEec------CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 001394 967 YCAILTVNQVVVSAGIFRIFG------QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWT 1040 (1087)
Q Consensus 967 y~~VL~~~~~vVsaA~lri~g------~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt 1040 (1087)
+.++...+|++||.+.+.+.. ...++|-.+.|.|+|||||+|+.||..+++.++..|+.+++|.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999886532 23678889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 001394 1041 NKFGFSMMTE 1050 (1087)
Q Consensus 1041 ~kfGF~~i~~ 1050 (1087)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998763
No 15
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.74 E-value=2.6e-09 Score=126.92 Aligned_cols=134 Identities=25% Similarity=0.539 Sum_probs=92.1
Q ss_pred ccccccccccC-----CceEecCCCCCcccccccCCCCCCCCCccccccccccccc-----------------ceecccc
Q 001394 715 NDDLCGICMDG-----GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKE-----------------KFVEYNA 772 (1087)
Q Consensus 715 ndd~C~VC~dg-----GeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~~ke-----------------k~v~~~~ 772 (1087)
++-.|.+|..+ .+|+|||.|....|+.|+|+..+|+|.|.|+.|.-.+.+. .-++|..
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHvs 349 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHVS 349 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEee
Confidence 66788888854 5999999999999999999999999999999996443221 2346778
Q ss_pred cccccccc-----ccccccccc---ccceeeecccCCCCCCccccccCCCCCCCCCCCcceeccC--CCCccCCCCCCCC
Q 001394 773 NARAAGRI-----EGVDPFAQM---VSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKD 842 (1087)
Q Consensus 773 na~aaGri-----eGvdpieqi---~kRCiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CD--qCeraYHv~CL~~ 842 (1087)
+++|.-.+ +-+.||..+ ..-.|. ..|.+|+.. .+.+|+|. .|..+||+.|...
T Consensus 350 CALwIPEVsie~~ekmePItkfs~IpesRws---------lvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~ 412 (893)
T KOG0954|consen 350 CALWIPEVSIECPEKMEPITKFSHIPESRWS---------LVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFE 412 (893)
T ss_pred eeeccceeeccCHhhcCcccccCCCcHHHHH---------HHHHHhccc--------CcceEEecccchhhhccchhhhh
Confidence 88875332 223333222 111111 359999874 36799998 8999999999999
Q ss_pred CCCCC---cccCC--CCCcccCCCchhhH
Q 001394 843 HGMED---LQELP--KGKWLCCADCKRIN 866 (1087)
Q Consensus 843 ~gm~~---LkelP--~g~WFC~~~C~~I~ 866 (1087)
+|+.. +.+.. ...-||+ .|..+.
T Consensus 413 aG~~~~~~~~~~D~v~~~s~c~-khs~~~ 440 (893)
T KOG0954|consen 413 AGLEMKTILKENDEVKFKSYCS-KHSDHR 440 (893)
T ss_pred cCCeeeeeeccCCchhheeecc-cccccc
Confidence 98742 11211 2345884 555544
No 16
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.73 E-value=3.4e-09 Score=114.45 Aligned_cols=94 Identities=29% Similarity=0.879 Sum_probs=76.7
Q ss_pred ccccccccccc----------CCceEecCCCCCcccccccCCC-----CCCCCCcccccccccccccceecccccccccc
Q 001394 714 ENDDLCGICMD----------GGDLLCCDSCPRAFHIDCVSLP-----GIPSGTWHCRYCMNTFQKEKFVEYNANARAAG 778 (1087)
Q Consensus 714 endd~C~VC~d----------gGeLl~CD~CprafH~~CL~l~-----~vP~G~W~C~~C~~~~~kek~v~~~~na~aaG 778 (1087)
....+|..|.. +.+|+.|..|.|+=|..||... .+..-.|+|..|+.
T Consensus 222 ~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~------------------ 283 (336)
T KOG1244|consen 222 QPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY------------------ 283 (336)
T ss_pred cCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce------------------
Confidence 34567888863 2489999999999999999754 45677899999973
Q ss_pred cccccccccccccceeeecccCCCCCCccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCccc
Q 001394 779 RIEGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLC 858 (1087)
Q Consensus 779 rieGvdpieqi~kRCiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC 858 (1087)
|.+|+.++ .++.|++||-|+|.||+.||. |++.+-|+|.|-|
T Consensus 284 ----------------------------csicgtse------nddqllfcddcdrgyhmycls----ppm~eppegswsc 325 (336)
T KOG1244|consen 284 ----------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLS----PPMVEPPEGSWSC 325 (336)
T ss_pred ----------------------------eccccCcC------CCceeEeecccCCceeeEecC----CCcCCCCCCchhH
Confidence 88998754 357899999999999999998 5678889999999
Q ss_pred CCCchh
Q 001394 859 CADCKR 864 (1087)
Q Consensus 859 ~~~C~~ 864 (1087)
.-|-+
T Consensus 326 -~KOG~ 330 (336)
T KOG1244|consen 326 -HLCLE 330 (336)
T ss_pred -HHHHH
Confidence 56654
No 17
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.70 E-value=5.3e-08 Score=94.47 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=69.2
Q ss_pred EEEEeCCEEEEEEEEEEec-----CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHH
Q 001394 969 AILTVNQVVVSAGIFRIFG-----QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWT 1040 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g-----~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~wt 1040 (1087)
+|++.++++||++.++... ...++|..++|.|+|||||+|+.||..+++.++..|...+.|.+. ..|+.||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987632 235789999999999999999999999999999999999998765 48999999
Q ss_pred hccCcEEcC
Q 001394 1041 NKFGFSMMT 1049 (1087)
Q Consensus 1041 ~kfGF~~i~ 1049 (1087)
+ +||....
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 18
>PLN02825 amino-acid N-acetyltransferase
Probab=98.68 E-value=7.7e-08 Score=114.54 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=84.2
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001394 969 AILTVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1047 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g-~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~ 1047 (1087)
+|++.|+++||++.+..+. .+.+||-.|||+|+|||+|+|++||+++|+.++++|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 4568999999999987765 46899999999999999999999999999999999999999976 467888888 99999
Q ss_pred cCHHHHHhHhcc-CCeeeeCCceeeeccC
Q 001394 1048 MTEEEQNKYRND-YPLMIFQGTSMLQKPV 1075 (1087)
Q Consensus 1048 i~~~e~~~~~~~-~~ll~F~GT~mLqK~l 1075 (1087)
.+.+++..-++. ++.- -++-.+.|.|
T Consensus 488 ~~~~~lp~~~~~~yn~~--r~sk~~~k~l 514 (515)
T PLN02825 488 CSIESLPEARRKRINLS--RGSKYYMKKL 514 (515)
T ss_pred eChhhCCHHHHhhcCcc--CCcEEEEEec
Confidence 999887766544 4421 3444455544
No 19
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.67 E-value=7.1e-09 Score=112.54 Aligned_cols=91 Identities=29% Similarity=0.722 Sum_probs=75.4
Q ss_pred ccccccccccC---------CceEecCCCCCcccccccCCC-----CCCCCCcccccccccccccceecccccccccccc
Q 001394 715 NDDLCGICMDG---------GDLLCCDSCPRAFHIDCVSLP-----GIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRI 780 (1087)
Q Consensus 715 ndd~C~VC~dg---------GeLl~CD~CprafH~~CL~l~-----~vP~G~W~C~~C~~~~~kek~v~~~~na~aaGri 780 (1087)
....|.+|.++ ..+++|..|..++|..|+.++ .+..-.|.|..|+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l-------------------- 316 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL-------------------- 316 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh--------------------
Confidence 34578899865 368999999999999999865 34567899999972
Q ss_pred cccccccccccceeeecccCCCCCCccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCC
Q 001394 781 EGVDPFAQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCA 860 (1087)
Q Consensus 781 eGvdpieqi~kRCiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~ 860 (1087)
|.+|+++.. +..+++||.|+|.||..|.- |..+|.|.|.|..
T Consensus 317 --------------------------C~IC~~P~~------E~E~~FCD~CDRG~HT~CVG------L~~lP~G~WICD~ 358 (381)
T KOG1512|consen 317 --------------------------CRICLGPVI------ESEHLFCDVCDRGPHTLCVG------LQDLPRGEWICDM 358 (381)
T ss_pred --------------------------hhccCCccc------chheeccccccCCCCccccc------cccccCccchhhh
Confidence 899998642 45799999999999999986 7889999999966
Q ss_pred Cch
Q 001394 861 DCK 863 (1087)
Q Consensus 861 ~C~ 863 (1087)
.|.
T Consensus 359 ~C~ 361 (381)
T KOG1512|consen 359 RCR 361 (381)
T ss_pred HHH
Confidence 665
No 20
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.66 E-value=1.3e-07 Score=93.16 Aligned_cols=82 Identities=10% Similarity=0.212 Sum_probs=69.2
Q ss_pred EEEEEEe--CCEEEEEEEEEEec------CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHH
Q 001394 967 YCAILTV--NQVVVSAGIFRIFG------QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAI 1038 (1087)
Q Consensus 967 y~~VL~~--~~~vVsaA~lri~g------~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~ 1038 (1087)
|.++... ++++||.+.+++.. ..++.|.-++|.++|||||+|+.||.++++.|+.+|+++|+|...+....|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444444 68999999885432 246777889999999999999999999999999999999999988888999
Q ss_pred HHhccCcEEcC
Q 001394 1039 WTNKFGFSMMT 1049 (1087)
Q Consensus 1039 wt~kfGF~~i~ 1049 (1087)
|.+ +||+..+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999764
No 21
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.64 E-value=1.2e-07 Score=97.31 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=71.0
Q ss_pred EEEE-eCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001394 969 AILT-VNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1047 (1087)
Q Consensus 969 ~VL~-~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~ 1047 (1087)
++++ .++++||.+.+.+...+.++|..++|+++|||+|+|+.||.++++.+++.|+++|++... +..||++ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 4556 889999999988877789999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cCH
Q 001394 1048 MTE 1050 (1087)
Q Consensus 1048 i~~ 1050 (1087)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 22
>PRK07757 acetyltransferase; Provisional
Probab=98.64 E-value=1.1e-07 Score=93.66 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=72.5
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 001394 970 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMT 1049 (1087)
Q Consensus 970 VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i~ 1049 (1087)
++..++++||.+.+.+.+.+.++|-.++|.|+|||+|+|+.||..+++.+...|+.++++-.. +..||.+ +||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEcc
Confidence 446789999999999988889999999999999999999999999999999999999876543 5689999 9999998
Q ss_pred HHHHH
Q 001394 1050 EEEQN 1054 (1087)
Q Consensus 1050 ~~e~~ 1054 (1087)
..++.
T Consensus 122 ~~~~~ 126 (152)
T PRK07757 122 KEALP 126 (152)
T ss_pred cccCC
Confidence 85544
No 23
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.64 E-value=8.6e-08 Score=107.32 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=67.7
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 001394 970 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMT 1049 (1087)
Q Consensus 970 VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i~ 1049 (1087)
+...++++||++++.. .+|..|||+|+|||||+|++||.++++.++..|+.+++|.+...+.+||.+ +||..++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 3457799999998842 368999999999999999999999999999999999999999999999997 9999988
No 24
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.62 E-value=8.1e-08 Score=96.65 Aligned_cols=86 Identities=24% Similarity=0.173 Sum_probs=73.5
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEE--EeeeeeccCcccCChhHHHHHHHHHHhhhcC-ccEEEecChhhhHHHHHhc
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQELAE--LPLVATSNDCQGQGYFQSLFCCIEKLLGFLN-VKTLVLPSASEAQAIWTNK 1042 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~~~AE--iplVAT~~~~RgQG~gr~L~~aIE~~L~~lg-V~~LvLpA~~eA~~~wt~k 1042 (1087)
..-++...+|++|++|+|-.-+....+ |.+|+|.+++||+|+|+.||....+.+.... =+.+.|.|+..++.||..
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~- 128 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS- 128 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-
Confidence 344454559999999999887766666 9999999999999999999998877777665 567999999999999999
Q ss_pred cCcEEcCHHH
Q 001394 1043 FGFSMMTEEE 1052 (1087)
Q Consensus 1043 fGF~~i~~~e 1052 (1087)
|||.+++++-
T Consensus 129 ~GFv~~~e~y 138 (155)
T COG2153 129 FGFVRVGEEY 138 (155)
T ss_pred hCcEEcCchh
Confidence 9999999863
No 25
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.62 E-value=2.4e-07 Score=88.33 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=78.7
Q ss_pred HHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEeCCEEEEEEEEEEe-----cC--ceEEEeeee
Q 001394 925 LSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQVVVSAGIFRIF-----GQ--ELAELPLVA 997 (1087)
Q Consensus 925 La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~~~~vVsaA~lri~-----g~--~~AEiplVA 997 (1087)
+.+..+++.++|.+-.... ..+.|..+. +..-++++.+.+++|||.+.+... |. .++-|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNL----YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHH----HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcc----cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 3455677788884433221 122222211 111256777889999998887554 43 479999999
Q ss_pred eccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001394 998 TSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 998 T~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i 1048 (1087)
|.|+|||||++++||.++++.++..|+..++|-+ ...+||.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999999877 44789988 999864
No 26
>PRK03624 putative acetyltransferase; Provisional
Probab=98.61 E-value=1.3e-07 Score=89.96 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=68.8
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhcc
Q 001394 967 YCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNKF 1043 (1087)
Q Consensus 967 y~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~wt~kf 1043 (1087)
+.+++..++++||.+.+...+ ..+.+..++|+|+|||||||+.|+..+++.++.+|++++.+.+. ..+..+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 445667889999999876543 45678889999999999999999999999999999999887654 458899988 9
Q ss_pred CcEEcCH
Q 001394 1044 GFSMMTE 1050 (1087)
Q Consensus 1044 GF~~i~~ 1050 (1087)
||+..+.
T Consensus 124 GF~~~~~ 130 (140)
T PRK03624 124 GYEEQDR 130 (140)
T ss_pred CCccccE
Confidence 9997653
No 27
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.57 E-value=2.4e-07 Score=108.17 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=74.1
Q ss_pred EEEeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001394 970 ILTVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 970 VL~~~~~vVsaA~lri~g-~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i 1048 (1087)
|++.++++||++.+..+. ...++|-.++|+|+|||||+|++||+.+++.+++.|+++|++.+. .+..||.+ +||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEEC
Confidence 557899999999998874 468999999999999999999999999999999999999887654 56899988 999999
Q ss_pred CHHHHHhH
Q 001394 1049 TEEEQNKY 1056 (1087)
Q Consensus 1049 ~~~e~~~~ 1056 (1087)
+..++..-
T Consensus 404 g~~~l~~~ 411 (429)
T TIGR01890 404 SVDELPEA 411 (429)
T ss_pred ChhhCCHH
Confidence 98655443
No 28
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.51 E-value=5.8e-07 Score=84.73 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=68.7
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHHhccCc
Q 001394 969 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP---SASEAQAIWTNKFGF 1045 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLp---A~~eA~~~wt~kfGF 1045 (1087)
+++..++++||.+.++... ....+-.++|.++|||||+|+.|+.++++.+...|+.++++. ....+..||++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 4456789999999987644 457888999999999999999999999999999999999984 45668899999 999
Q ss_pred EEcCH
Q 001394 1046 SMMTE 1050 (1087)
Q Consensus 1046 ~~i~~ 1050 (1087)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98865
No 29
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.50 E-value=3.7e-07 Score=103.72 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=73.5
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccC
Q 001394 965 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFG 1044 (1087)
Q Consensus 965 Gfy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfG 1044 (1087)
-.|+++++.++++||+|++ .|. .|..|||+++|||+|+|+.||.+|++.+++.|+..++|.+.+.+..||.+ +|
T Consensus 30 ~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lG 103 (332)
T TIGR00124 30 LEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CG 103 (332)
T ss_pred CCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cC
Confidence 3567778899999999997 342 48899999999999999999999999999999999999999999999988 99
Q ss_pred cEEcCHHH
Q 001394 1045 FSMMTEEE 1052 (1087)
Q Consensus 1045 F~~i~~~e 1052 (1087)
|..+....
T Consensus 104 F~~i~~~~ 111 (332)
T TIGR00124 104 FKTLAEAK 111 (332)
T ss_pred CEEeeeec
Confidence 99998643
No 30
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.47 E-value=6.3e-07 Score=92.96 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=70.9
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhc
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNK 1042 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~wt~k 1042 (1087)
.+.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.++..|+.++++... ..+..||++
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek- 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR- 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH-
Confidence 3333444678999999998776677999999999999999999999999999999999999987644 568999988
Q ss_pred cCcEEcC
Q 001394 1043 FGFSMMT 1049 (1087)
Q Consensus 1043 fGF~~i~ 1049 (1087)
+||+..+
T Consensus 181 ~Gf~~~~ 187 (194)
T PRK10975 181 SGANIES 187 (194)
T ss_pred CCCeEeE
Confidence 9999764
No 31
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.46 E-value=5.8e-07 Score=105.17 Aligned_cols=85 Identities=16% Similarity=0.301 Sum_probs=73.7
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001394 969 AILTVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1047 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g-~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~ 1047 (1087)
++++.++++||++.+..+. ...++|-.++|+|+|||||+|++||.++++.++..|+.++++.+ ..|..||.+ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 4557899999999887654 36899999999999999999999999999999999999998765 468999988 99999
Q ss_pred cCHHHHHh
Q 001394 1048 MTEEEQNK 1055 (1087)
Q Consensus 1048 i~~~e~~~ 1055 (1087)
++..++..
T Consensus 415 ~g~~~~~~ 422 (441)
T PRK05279 415 VDVDDLPE 422 (441)
T ss_pred CChhhCcH
Confidence 99865443
No 32
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.46 E-value=7.5e-07 Score=92.42 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=70.2
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhccCcE
Q 001394 970 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNKFGFS 1046 (1087)
Q Consensus 970 VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~wt~kfGF~ 1046 (1087)
+...++++||.+.+.......++|-.+++.++|||||+|+.|+.++++.+..+|+.+|.+... ..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 345688999999998776667899999999999999999999999999999999999998743 568999998 9998
Q ss_pred EcCH
Q 001394 1047 MMTE 1050 (1087)
Q Consensus 1047 ~i~~ 1050 (1087)
....
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 6653
No 33
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.42 E-value=6.7e-07 Score=108.92 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=73.7
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001394 969 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i 1048 (1087)
+|++.++++||.+.+.+.....++|..++|+|+|||||+|+.||+.+++.++..|++.|++.+. +..||++ +||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHHH-CCCEEC
Confidence 4567899999999998877778999999999999999999999999999999999999988653 5789998 999999
Q ss_pred CHHHH
Q 001394 1049 TEEEQ 1053 (1087)
Q Consensus 1049 ~~~e~ 1053 (1087)
+..++
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 97654
No 34
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.41 E-value=1.7e-06 Score=85.00 Aligned_cols=84 Identities=29% Similarity=0.243 Sum_probs=70.8
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHHh
Q 001394 965 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP---SASEAQAIWTN 1041 (1087)
Q Consensus 965 Gfy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLp---A~~eA~~~wt~ 1041 (1087)
+++..++..++++||.+.++.... .+++-.++|.++|||||+|+.|+..+++.+...|+..+++. .-..+..+|.+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 455555678899999999876654 46678899999999999999999999999999999998875 34578999999
Q ss_pred ccCcEEcCH
Q 001394 1042 KFGFSMMTE 1050 (1087)
Q Consensus 1042 kfGF~~i~~ 1050 (1087)
+||+..+.
T Consensus 118 -~Gf~~~~~ 125 (146)
T PRK09491 118 -LGFNEVTI 125 (146)
T ss_pred -cCCEEeee
Confidence 99998765
No 35
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.37 E-value=1.1e-06 Score=96.12 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=70.7
Q ss_pred eEEEEEEeCCEEEEEEEEEEe-cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhh---hHHHHHh
Q 001394 966 MYCAILTVNQVVVSAGIFRIF-GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASE---AQAIWTN 1041 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~-g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~e---A~~~wt~ 1041 (1087)
.+.++++.++++||.+++.+. +...++|--++|.|+|||||+|+.||..+++.++..|++++++.+... +..+|.+
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k 237 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFAR 237 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHH
Confidence 344566789999999997543 346799999999999999999999999999999999999999987654 4668887
Q ss_pred ccCcEEcCH
Q 001394 1042 KFGFSMMTE 1050 (1087)
Q Consensus 1042 kfGF~~i~~ 1050 (1087)
+||+..+.
T Consensus 238 -~GF~~~G~ 245 (266)
T TIGR03827 238 -LGYAYGGT 245 (266)
T ss_pred -cCCccccE
Confidence 99997665
No 36
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.31 E-value=2.9e-06 Score=83.58 Aligned_cols=84 Identities=13% Similarity=0.225 Sum_probs=68.7
Q ss_pred eEEEEEEeCCEEEEEEEEEEec----CceEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecCh---hhhHH
Q 001394 966 MYCAILTVNQVVVSAGIFRIFG----QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPSA---SEAQA 1037 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g----~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~-lgV~~LvLpA~---~eA~~ 1037 (1087)
.+.+++..++++||.+.+.... ...+++. +++.++|||||+|+.||..+.+.+.. +|+.++.+... ..|+.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3556667889999999987542 2356664 89999999999999999999999988 79888777553 67889
Q ss_pred HHHhccCcEEcCHH
Q 001394 1038 IWTNKFGFSMMTEE 1051 (1087)
Q Consensus 1038 ~wt~kfGF~~i~~~ 1051 (1087)
||++ +||+..+..
T Consensus 130 ~y~k-~GF~~~g~~ 142 (162)
T PRK10140 130 VYKK-YGFEIEGTG 142 (162)
T ss_pred HHHH-CCCEEEeec
Confidence 9998 999988764
No 37
>PRK13688 hypothetical protein; Provisional
Probab=98.30 E-value=2.1e-06 Score=87.88 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=60.0
Q ss_pred EEEeCCEEEEEEEEEEe----------cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 001394 970 ILTVNQVVVSAGIFRIF----------GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIW 1039 (1087)
Q Consensus 970 VL~~~~~vVsaA~lri~----------g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w 1039 (1087)
+++.++++||++.+... ..+.++|-.++|.++|||||+|++||..+++. ++. +.+.+...|..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHH
Confidence 34678999998887542 24678999999999999999999999876543 443 4455667889999
Q ss_pred HhccCcEEcCHH
Q 001394 1040 TNKFGFSMMTEE 1051 (1087)
Q Consensus 1040 t~kfGF~~i~~~ 1051 (1087)
.+ +||..++..
T Consensus 124 ~k-~GF~~~~~~ 134 (156)
T PRK13688 124 LK-LGFTPVEYK 134 (156)
T ss_pred Hh-CCCEEeEEe
Confidence 99 999988755
No 38
>PRK09831 putative acyltransferase; Provisional
Probab=98.30 E-value=1.8e-06 Score=85.47 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=61.9
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001394 969 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i 1048 (1087)
+|+..+|++||.+.+.. +.+..++|.|+|||||+|++||..+++.+.. |.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 45578899999988732 4677899999999999999999999998875 555667789999999 999999
Q ss_pred CHHH
Q 001394 1049 TEEE 1052 (1087)
Q Consensus 1049 ~~~e 1052 (1087)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8864
No 39
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.28 E-value=4.9e-07 Score=107.39 Aligned_cols=49 Identities=37% Similarity=0.994 Sum_probs=40.6
Q ss_pred ccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCch
Q 001394 806 GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCK 863 (1087)
Q Consensus 806 ~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~ 863 (1087)
+|..|++.+ .| ..+|+||.|++.||+.||.|+ -..+.+|.+.|||+ .|.
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP--l~~eniP~g~W~C~-ec~ 303 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP--LEPENIPPGSWFCP-ECK 303 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC--CCcccCCCCccccC-CCe
Confidence 899999865 34 568999999999999999974 23678999999995 664
No 40
>PHA00673 acetyltransferase domain containing protein
Probab=98.26 E-value=5.4e-06 Score=85.04 Aligned_cols=84 Identities=12% Similarity=0.053 Sum_probs=73.0
Q ss_pred eEEEEEEeCCEEEEEEEEEEec------CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhh--hHH
Q 001394 966 MYCAILTVNQVVVSAGIFRIFG------QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASE--AQA 1037 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g------~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~e--A~~ 1037 (1087)
-..+|.+.+|++||++.+.+.. ...+.|-.|.|++++||||+|++||..+++.++..|...|.++|.|+ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3445667899999999988753 35778999999999999999999999999999999999999999974 689
Q ss_pred HHHhccCcEEcCH
Q 001394 1038 IWTNKFGFSMMTE 1050 (1087)
Q Consensus 1038 ~wt~kfGF~~i~~ 1050 (1087)
||.+ .|++....
T Consensus 135 fy~~-~g~~~~~~ 146 (154)
T PHA00673 135 LLPA-AGYRETNR 146 (154)
T ss_pred HHHh-CCchhhch
Confidence 9999 99986543
No 41
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.18 E-value=8.5e-07 Score=103.40 Aligned_cols=148 Identities=18% Similarity=0.283 Sum_probs=91.7
Q ss_pred cccccccc-----CCceEecCCCCCcccccccCCCCCCCCCcccccccccccccceecccccccccccccccc-cccccc
Q 001394 717 DLCGICMD-----GGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVD-PFAQMV 790 (1087)
Q Consensus 717 d~C~VC~d-----gGeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~~kek~v~~~~na~aaGrieGvd-pieqi~ 790 (1087)
-.|.+|.. +.++..|+.|-++||+.|..+.....+.|.+..|.....-..-+ +...|+..... +.. ..
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~-----a~K~g~~a~~~l~y~-~~ 157 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGG-----ALKKGRLARPSLPYP-EA 157 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccc-----cccccccccccccCc-cc
Confidence 45667763 45788999999999999998877778899999987542211111 11122222100 000 00
Q ss_pred cceeeecccCCCCCCccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCchhhHHHHH
Q 001394 791 SRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINLALQ 870 (1087)
Q Consensus 791 kRCiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~~I~~~Lq 870 (1087)
..-|+. .... ...|.+|....... .+.|++|+.|..|||..|..+..-+.+...|...||| ..|..-...+.
T Consensus 158 ~l~wD~--~~~~-n~qc~vC~~g~~~~----~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~~~ 229 (464)
T KOG4323|consen 158 SLDWDS--GHKV-NLQCSVCYCGGPGA----GNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKKVP 229 (464)
T ss_pred ccccCc--cccc-cceeeeeecCCcCc----cceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhhcc
Confidence 000000 0001 12388888654322 2379999999999999999987655566678899999 57877777666
Q ss_pred HHhhcCCc
Q 001394 871 KLVDRGEE 878 (1087)
Q Consensus 871 kLVarg~e 878 (1087)
.+-.+.+.
T Consensus 230 r~t~~~~d 237 (464)
T KOG4323|consen 230 RLTLRWAD 237 (464)
T ss_pred cccccccc
Confidence 65554333
No 42
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.14 E-value=1.1e-05 Score=88.37 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=65.2
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh-hhhHHHHHhccCc
Q 001394 967 YCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA-SEAQAIWTNKFGF 1045 (1087)
Q Consensus 967 y~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~-~eA~~~wt~kfGF 1045 (1087)
+.+|...++++||.+.+.......+++-.++|+|+|||||+|++||..+++.+. +--.|++... ..|+.||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 345567889999999988875556788899999999999999999999999865 2234455543 678999999 999
Q ss_pred EEcCH
Q 001394 1046 SMMTE 1050 (1087)
Q Consensus 1046 ~~i~~ 1050 (1087)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 98765
No 43
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.12 E-value=9.3e-06 Score=88.82 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=67.9
Q ss_pred ceEEEEEEeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHH
Q 001394 965 GMYCAILTVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIW 1039 (1087)
Q Consensus 965 Gfy~~VL~~~~~vVsaA~lri~g--~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w 1039 (1087)
++|.++-..++++||.+.+.+.. ...++|-.++|+|+|||||+|+.||..+++.++..|+..+.+... ..|..||
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 44444321268999987666654 246888889999999999999999999999999999998887654 4689999
Q ss_pred HhccCcEEcCH
Q 001394 1040 TNKFGFSMMTE 1050 (1087)
Q Consensus 1040 t~kfGF~~i~~ 1050 (1087)
.+ +||+....
T Consensus 279 ~k-~GF~~~~~ 288 (292)
T TIGR03448 279 EK-LGFTVAEV 288 (292)
T ss_pred HH-cCCEEccc
Confidence 99 99997653
No 44
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.12 E-value=1.3e-05 Score=82.22 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=63.6
Q ss_pred EEEEEEEEEec---CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHHHhccCcEEcCH
Q 001394 977 VVSAGIFRIFG---QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 977 vVsaA~lri~g---~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~wt~kfGF~~i~~ 1050 (1087)
.|||....... ..-++|-.+||+++|||||+|++|+..+.+.+++.|...++|.+- ..|..+|++ |||.+...
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 57777665433 235999999999999999999999999999999999999999765 689999999 99998765
Q ss_pred H
Q 001394 1051 E 1051 (1087)
Q Consensus 1051 ~ 1051 (1087)
.
T Consensus 147 ~ 147 (165)
T KOG3139|consen 147 L 147 (165)
T ss_pred e
Confidence 4
No 45
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.12 E-value=1e-05 Score=81.93 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=66.2
Q ss_pred EEEEEE-eCCEEEEEEEEEE--ecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec---ChhhhHHHHH
Q 001394 967 YCAILT-VNQVVVSAGIFRI--FGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP---SASEAQAIWT 1040 (1087)
Q Consensus 967 y~~VL~-~~~~vVsaA~lri--~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLp---A~~eA~~~wt 1040 (1087)
+++|.+ .++++||.+.+.. ...+.+.+-.+||+|+|||||+|+.|+..+++.+...++.+|.+. .-..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345556 4679999876543 234578899999999999999999999999999999999888775 3467889999
Q ss_pred hccCcEEcC
Q 001394 1041 NKFGFSMMT 1049 (1087)
Q Consensus 1041 ~kfGF~~i~ 1049 (1087)
+ +||+...
T Consensus 120 k-~G~~~~~ 127 (157)
T TIGR02406 120 A-LARRRGV 127 (157)
T ss_pred H-hCcccCC
Confidence 8 9998643
No 46
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.08 E-value=1.6e-05 Score=79.66 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=63.9
Q ss_pred EEEEEEEEEE-ecC----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCc-cEEEecCh---hhhHHHHHhccCcE
Q 001394 976 VVVSAGIFRI-FGQ----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNV-KTLVLPSA---SEAQAIWTNKFGFS 1046 (1087)
Q Consensus 976 ~vVsaA~lri-~g~----~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV-~~LvLpA~---~eA~~~wt~kfGF~ 1046 (1087)
+++|....++ .+. ..++|-.+||+|+|||+|+|++|+..+++.+...+. ..++|-.. ..|+.+|.+ +||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 4788777753 332 279999999999999999999999999999999997 78888655 578999999 9999
Q ss_pred EcCHHH
Q 001394 1047 MMTEEE 1052 (1087)
Q Consensus 1047 ~i~~~e 1052 (1087)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 887644
No 47
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.07 E-value=2.5e-05 Score=76.95 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=65.9
Q ss_pred EEEEE-eCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHh-hhcCccEEEec---ChhhhHHHHH
Q 001394 968 CAILT-VNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLL-GFLNVKTLVLP---SASEAQAIWT 1040 (1087)
Q Consensus 968 ~~VL~-~~~~vVsaA~lri~g--~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L-~~lgV~~LvLp---A~~eA~~~wt 1040 (1087)
.+++. .+|++||.+.++... ...+++- +-+.++||++|+|+.|+..|++.+ ..+|+++|.+. .-..|+.||+
T Consensus 52 ~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~ 130 (155)
T PF13420_consen 52 LFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK 130 (155)
T ss_dssp EEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH
T ss_pred EEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH
Confidence 33334 599999999998655 3578887 555599999999999999999999 99999998864 3368899999
Q ss_pred hccCcEEcCH
Q 001394 1041 NKFGFSMMTE 1050 (1087)
Q Consensus 1041 ~kfGF~~i~~ 1050 (1087)
+ +||+..+.
T Consensus 131 ~-~GF~~~g~ 139 (155)
T PF13420_consen 131 K-LGFEEEGE 139 (155)
T ss_dssp H-TTEEEEEE
T ss_pred h-CCCEEEEE
Confidence 9 99998754
No 48
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.04 E-value=1.6e-05 Score=95.94 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=68.0
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe------cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecC---hh
Q 001394 965 GMYCAILTV--NQVVVSAGIFRIF------GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPS---AS 1033 (1087)
Q Consensus 965 Gfy~~VL~~--~~~vVsaA~lri~------g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA---~~ 1033 (1087)
+.+.+|.+. +|++||.+....+ ....++|-.|+|+|+|||||+|++||..+++.++..|+.+++|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 334455553 6999999875332 123478889999999999999999999999999999999987653 46
Q ss_pred hhHHHHHhccCcEEcCH
Q 001394 1034 EAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 1034 eA~~~wt~kfGF~~i~~ 1050 (1087)
.|..||.+ +||+.++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 79999998 99988753
No 49
>PHA01807 hypothetical protein
Probab=98.03 E-value=1.3e-05 Score=82.11 Aligned_cols=81 Identities=5% Similarity=0.023 Sum_probs=63.9
Q ss_pred EEEEEEeCCEEEEEEEEEEecC----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh---hhhHHHH
Q 001394 967 YCAILTVNQVVVSAGIFRIFGQ----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA---SEAQAIW 1039 (1087)
Q Consensus 967 y~~VL~~~~~vVsaA~lri~g~----~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~---~eA~~~w 1039 (1087)
+.++++.++++||.+.+..... .+.+|..|.|.|+|||+|+|++||+.+++.++..|+..|++-.. ..|..+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3355678999999999865432 23445557999999999999999999999999999999988655 5678899
Q ss_pred HhccCcEEcCH
Q 001394 1040 TNKFGFSMMTE 1050 (1087)
Q Consensus 1040 t~kfGF~~i~~ 1050 (1087)
.+ |++.+.
T Consensus 134 ~~---~~~~~~ 141 (153)
T PHA01807 134 RR---VKPYGQ 141 (153)
T ss_pred Hh---cCccCC
Confidence 88 444443
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.02 E-value=1.5e-06 Score=104.37 Aligned_cols=136 Identities=22% Similarity=0.428 Sum_probs=77.3
Q ss_pred cccccccc---CCceEecCCCCCcccccccCCCCCCCCCcccccccccccccceecccccccccccccccccccccccc-
Q 001394 717 DLCGICMD---GGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSR- 792 (1087)
Q Consensus 717 d~C~VC~d---gGeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~~kek~v~~~~na~aaGrieGvdpieqi~kR- 792 (1087)
..|.+|.. .+...-=..|...||..|++- +..-.--|+.|+..|.+........+..+ .+....+...+++..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s--WsR~aqTCPiDR~EF~~v~V~eS~~~~~~-vR~lP~EEs~~~~e~~ 200 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGS--WSRCAQTCPVDRGEFGEVKVLESTGIEAN-VRCLPSEESENILEKG 200 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhh--hhhhcccCchhhhhhheeeeeccccccce-eEecchhhhhhhhhhc
Confidence 46777753 222222345788888888872 11223358888877665433221111000 000000000010000
Q ss_pred ---eeeecccCCCCCCccccccCCCCCCCCCCCcceeccCCCCcc-CCCCCCCCCCCCCcccCCCCCcccCCCchhhH
Q 001394 793 ---CIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCERE-YHVGCLKDHGMEDLQELPKGKWLCCADCKRIN 866 (1087)
Q Consensus 793 ---CiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CDqCera-YHv~CL~~~gm~~LkelP~g~WFC~~~C~~I~ 866 (1087)
--........+...|.+|..+|. +..||+||.|... ||++||+ ++|-++|-+.||| .+|..+.
T Consensus 201 ~d~~~d~~~~~~~E~~~C~IC~~~Dp------EdVLLLCDsCN~~~YH~YCLD----Pdl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 201 GDEKQDQISGLSQEEVKCDICTVHDP------EDVLLLCDSCNKVYYHVYCLD----PDLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred cccccccccCcccccccceeeccCCh------HHhheeecccccceeeccccC----cccccccccceec-Ccchhhh
Confidence 00001122334567999998763 5689999999998 9999999 5788999999999 5887553
No 51
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.98 E-value=3e-05 Score=62.38 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=55.0
Q ss_pred EEEEeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe
Q 001394 969 AILTVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL 1029 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g--~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvL 1029 (1087)
+++..++++||.+.+.... ...+++-.++|.++|||+|+++.||..+.+.+...|.+++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999988866 478999999999999999999999999999999999999886
No 52
>PRK10514 putative acetyltransferase; Provisional
Probab=97.97 E-value=2.4e-05 Score=76.39 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=58.7
Q ss_pred EeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHH
Q 001394 972 TVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMTEE 1051 (1087)
Q Consensus 972 ~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i~~~ 1051 (1087)
..++++||.+.+.- .++..+++.|+|||||+|++||+.+++.+.. +...+...-..+..||++ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 46789999887642 3455799999999999999999999987643 444445555789999998 999998775
Q ss_pred HHH
Q 001394 1052 EQN 1054 (1087)
Q Consensus 1052 e~~ 1054 (1087)
...
T Consensus 128 ~~~ 130 (145)
T PRK10514 128 EVD 130 (145)
T ss_pred ccC
Confidence 433
No 53
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.96 E-value=2.8e-06 Score=103.69 Aligned_cols=50 Identities=40% Similarity=1.037 Sum_probs=43.2
Q ss_pred cccccccccccCCceEecCCCCCcccccccCCC--CCCCCCccccccccccc
Q 001394 714 ENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQ 763 (1087)
Q Consensus 714 endd~C~VC~dgGeLl~CD~CprafH~~CL~l~--~vP~G~W~C~~C~~~~~ 763 (1087)
.+...|.+|.++|++++||.|+.+||..|++++ ..|.+.|.|+.|.++..
T Consensus 45 ~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 45 AEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 356799999999999999999999999999865 56778899999966544
No 54
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.96 E-value=2.5e-06 Score=101.77 Aligned_cols=140 Identities=24% Similarity=0.517 Sum_probs=85.6
Q ss_pred ceEecCCCCccCchhhhhccCcccccCCccceeccCCcchhhhhhhhccCCCCCCccccccccccc---cCCceEecCCC
Q 001394 658 GILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICM---DGGDLLCCDSC 734 (1087)
Q Consensus 658 GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I~~snG~SL~dl~~~l~k~~k~s~~endd~C~VC~---dgGeLl~CD~C 734 (1087)
...|++|+..+|+.+.-.- ..+..+..||..+. .-.|..|+ |...+++|+.|
T Consensus 35 m~ac~~c~~~yH~~cvt~~---------~~~~~l~~gWrC~~----------------crvCe~c~~~gD~~kf~~Ck~c 89 (694)
T KOG4443|consen 35 LLACSDCGQKYHPYCVTSW---------AQHAVLSGGWRCPS----------------CRVCEACGTTGDPKKFLLCKRC 89 (694)
T ss_pred chhhhhhcccCCcchhhHH---------HhHHHhcCCcccCC----------------ceeeeeccccCCcccccccccc
Confidence 4579999999999876542 23333444443332 23566676 44579999999
Q ss_pred CCcccccccCCC--CCCCCCcccccccccccccceecccccccccc-cccccccccccccceeeecccCCCCCCcccccc
Q 001394 735 PRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKEKFVEYNANARAAG-RIEGVDPFAQMVSRCIRIVQTPDTELGGCVLCR 811 (1087)
Q Consensus 735 prafH~~CL~l~--~vP~G~W~C~~C~~~~~kek~v~~~~na~aaG-rieGvdpieqi~kRCiRivk~~d~e~g~C~vCk 811 (1087)
+-+||-+|..|+ .++.|.|+|+.|... +.+....+| ...-....-+ ..-|+. ...|++|.
T Consensus 90 Dvsyh~yc~~P~~~~v~sg~~~ckk~~~c--------~qc~~~lpg~s~~~~~~~~~-~~~c~s--------~~~cPvc~ 152 (694)
T KOG4443|consen 90 DVSYHCYCQKPPNDKVPSGPWLCKKCTRC--------RQCDSTLPGLSLDLQEGYLQ-CAPCAS--------LSYCPVCL 152 (694)
T ss_pred cccccccccCCccccccCcccccHHHHhh--------hhccccccccchhhhccCcc-cccccc--------cccCchHH
Confidence 999999999866 789999999988643 222222223 1100000000 011221 24577776
Q ss_pred CCCCCCCCCCCcceeccCCCCccCCCCCCCC
Q 001394 812 GRDFCKSRFGRRTVILCDQCEREYHVGCLKD 842 (1087)
Q Consensus 812 ~~dfsks~f~~~tLL~CDqCeraYHv~CL~~ 842 (1087)
..-... ..-.++.|++|.+|-|..|..-
T Consensus 153 ~~Y~~~---e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 153 IVYQDS---ESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred Hhhhhc---cchhhHHHHHhcccccCCCCcc
Confidence 532111 1224699999999999999764
No 55
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.96 E-value=2.4e-05 Score=78.40 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=73.8
Q ss_pred eEEEEEEeC--CEEEEEEEEEEe-----cC-ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHH
Q 001394 966 MYCAILTVN--QVVVSAGIFRIF-----GQ-ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQA 1037 (1087)
Q Consensus 966 fy~~VL~~~--~~vVsaA~lri~-----g~-~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~ 1037 (1087)
.|.+|+++- ++|||+|+|.|- +- .-.+|-=|+|+++||||++|+.|+..+-.++.++|+=.+.|.-.++.++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 677777744 899999999874 32 3467888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcC
Q 001394 1038 IWTNKFGFSMMT 1049 (1087)
Q Consensus 1038 ~wt~kfGF~~i~ 1049 (1087)
||.+ |||+..+
T Consensus 133 FYeK-cG~s~~~ 143 (150)
T KOG3396|consen 133 FYEK-CGYSNAG 143 (150)
T ss_pred HHHH-cCccccc
Confidence 9999 9999776
No 56
>PRK01346 hypothetical protein; Provisional
Probab=97.95 E-value=2.9e-05 Score=89.65 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=68.5
Q ss_pred EEEEEeCCEEEEEEEEEEe------cC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHH
Q 001394 968 CAILTVNQVVVSAGIFRIF------GQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIW 1039 (1087)
Q Consensus 968 ~~VL~~~~~vVsaA~lri~------g~--~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~w 1039 (1087)
+++++.++++||.+.+..+ +. ..+.|-.|||.|+|||||+|++||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3556789999999887643 22 478999999999999999999999999999999999988887664 4789
Q ss_pred HhccCcEEcCHH
Q 001394 1040 TNKFGFSMMTEE 1051 (1087)
Q Consensus 1040 t~kfGF~~i~~~ 1051 (1087)
.+ |||......
T Consensus 127 ~r-~Gf~~~~~~ 137 (411)
T PRK01346 127 GR-FGYGPATYS 137 (411)
T ss_pred hh-CCCeeccce
Confidence 98 999987764
No 57
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.95 E-value=4.5e-05 Score=70.62 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEE-e-cChhhhHHHHHhccCcEEcC
Q 001394 974 NQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLV-L-PSASEAQAIWTNKFGFSMMT 1049 (1087)
Q Consensus 974 ~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~Lv-L-pA~~eA~~~wt~kfGF~~i~ 1049 (1087)
+++.++.+.-.+..+. ++|-.|.|.|+|||+|+|+.|+.+|.+.+...|..-+. + ..-..|+.+|++ +||+.+.
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIE 81 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEE
Confidence 3455555555555555 99999999999999999999999999999888877533 2 233568899999 9999874
No 58
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.88 E-value=7e-05 Score=76.69 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=67.0
Q ss_pred EEEEEeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhh-hcCccEEEecCh---hhhHHHHHh
Q 001394 968 CAILTVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLG-FLNVKTLVLPSA---SEAQAIWTN 1041 (1087)
Q Consensus 968 ~~VL~~~~~vVsaA~lri~g--~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~-~lgV~~LvLpA~---~eA~~~wt~ 1041 (1087)
.++++.++++||.+.+.... ...+++- +++.++|||+|+|+.|+..+.+.+. .+|+++|++... ..|..+|.+
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 44557899999999886653 3467774 8999999999999999999998875 689999988643 578999999
Q ss_pred ccCcEEcCH
Q 001394 1042 KFGFSMMTE 1050 (1087)
Q Consensus 1042 kfGF~~i~~ 1050 (1087)
+||+.++.
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998765
No 59
>PRK10562 putative acetyltransferase; Provisional
Probab=97.86 E-value=4.9e-05 Score=74.92 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=59.0
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001394 969 AILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i 1048 (1087)
+++..++++||.+.+... ..+..++|.++|||+|||+.||..+++.+..+.+ .+...-..+..||++ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEc
Confidence 455678899999887432 4577899999999999999999999987654322 233445678999999 999998
Q ss_pred CHH
Q 001394 1049 TEE 1051 (1087)
Q Consensus 1049 ~~~ 1051 (1087)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 60
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.86 E-value=3.6e-06 Score=104.34 Aligned_cols=128 Identities=31% Similarity=0.530 Sum_probs=83.5
Q ss_pred ccccccccccccCCceEecCCCCCcccccccCCC--CCCCCCcccccccccccccceeccccccccccccccccccc-cc
Q 001394 713 KENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP--GIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFA-QM 789 (1087)
Q Consensus 713 ~endd~C~VC~dgGeLl~CD~CprafH~~CL~l~--~vP~G~W~C~~C~~~~~kek~v~~~~na~aaGrieGvdpie-qi 789 (1087)
..-+|.|.+|.+.|.++||..||+.||..|..+| .+|+..|.|-.|.. ++. +. -+.++-|.+ +.
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~--hkv-------ng----vvd~vl~~~K~~ 407 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI--HKV-------NG----VVDCVLPPSKNV 407 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh--hcc-------Cc----ccccccChhhcc
Confidence 3467899999999999999999999999999866 78999999999973 111 11 011111110 00
Q ss_pred cc-ceeeeccc-----CCCCCCccccccCCCCCCCCCCCcceeccCC-CCccCCC-CCCCCCCCCCcccCCCCCcccCCC
Q 001394 790 VS-RCIRIVQT-----PDTELGGCVLCRGRDFCKSRFGRRTVILCDQ-CEREYHV-GCLKDHGMEDLQELPKGKWLCCAD 861 (1087)
Q Consensus 790 ~k-RCiRivk~-----~d~e~g~C~vCk~~dfsks~f~~~tLL~CDq-CeraYHv-~CL~~~gm~~LkelP~g~WFC~~~ 861 (1087)
.. |+..+-.+ ..-....|.+|.. +++++.|+. |++.||. .||...- --..++++-|+| .+
T Consensus 408 ~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e~~L~d~i~~~-~e 475 (1414)
T KOG1473|consen 408 DSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VEMYLCDGIWER-RE 475 (1414)
T ss_pred cceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HHHhhccchhhh-HH
Confidence 00 11111000 0011234888875 467899997 9999999 9998532 234678899999 46
Q ss_pred chhh
Q 001394 862 CKRI 865 (1087)
Q Consensus 862 C~~I 865 (1087)
|-.-
T Consensus 476 e~~r 479 (1414)
T KOG1473|consen 476 EIIR 479 (1414)
T ss_pred HHHH
Confidence 6543
No 61
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.84 E-value=6.2e-06 Score=98.45 Aligned_cols=101 Identities=31% Similarity=0.774 Sum_probs=75.5
Q ss_pred ccccccccccC-----CceEecCCCCCcccccccCCC-C--CCCCCcccccccccccccceecccccccccccccccccc
Q 001394 715 NDDLCGICMDG-----GDLLCCDSCPRAFHIDCVSLP-G--IPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPF 786 (1087)
Q Consensus 715 ndd~C~VC~dg-----GeLl~CD~CprafH~~CL~l~-~--vP~G~W~C~~C~~~~~kek~v~~~~na~aaGrieGvdpi 786 (1087)
....|.+|+.. |.|+.|..|...||..|+... . +-.+.|.|+.|+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv-------------------------- 70 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV-------------------------- 70 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee--------------------------
Confidence 44578888754 468999999999999999732 1 1245599999973
Q ss_pred cccccceeeecccCCCCCCccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCC--Cchh
Q 001394 787 AQMVSRCIRIVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCA--DCKR 864 (1087)
Q Consensus 787 eqi~kRCiRivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~--~C~~ 864 (1087)
|..|+. ..++..+++|+.|+-.||.+|.. |+++.+|.+.|+|+. .|.+
T Consensus 71 --------------------Ce~c~~------~gD~~kf~~Ck~cDvsyh~yc~~----P~~~~v~sg~~~ckk~~~c~q 120 (694)
T KOG4443|consen 71 --------------------CEACGT------TGDPKKFLLCKRCDVSYHCYCQK----PPNDKVPSGPWLCKKCTRCRQ 120 (694)
T ss_pred --------------------eeeccc------cCCcccccccccccccccccccC----CccccccCcccccHHHHhhhh
Confidence 777764 23466789999999999999998 468899999999965 3444
Q ss_pred hHHHHHH
Q 001394 865 INLALQK 871 (1087)
Q Consensus 865 I~~~Lqk 871 (1087)
....|..
T Consensus 121 c~~~lpg 127 (694)
T KOG4443|consen 121 CDSTLPG 127 (694)
T ss_pred ccccccc
Confidence 4344444
No 62
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.83 E-value=0.00013 Score=72.22 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=68.4
Q ss_pred eceEEEEEEeCCEEEEEEEEEE------ecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhc-CccEEEecCh---h
Q 001394 964 HGMYCAILTVNQVVVSAGIFRI------FGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFL-NVKTLVLPSA---S 1033 (1087)
Q Consensus 964 ~Gfy~~VL~~~~~vVsaA~lri------~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~l-gV~~LvLpA~---~ 1033 (1087)
.+.+.+|++.+|++||.+.+.- .....+.+-.+++.++|||||+|+.+|.++.+.+..- ++++|++... .
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 3667788899999999887642 1345778999999999999999999999999887766 8999999765 4
Q ss_pred hhHHHHHhccCcEEcCH
Q 001394 1034 EAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 1034 eA~~~wt~kfGF~~i~~ 1050 (1087)
-++.+|++ +||+.++.
T Consensus 126 ~~~~~~~k-~GF~~~g~ 141 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGE 141 (152)
T ss_dssp HHHHHHHH-TT-EEEEE
T ss_pred HHHHHHHH-cCCEEeeE
Confidence 78899998 99998765
No 63
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.83 E-value=6.2e-05 Score=84.87 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=68.9
Q ss_pred ceEEEEEEe---CCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh-----hhhH
Q 001394 965 GMYCAILTV---NQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA-----SEAQ 1036 (1087)
Q Consensus 965 Gfy~~VL~~---~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~-----~eA~ 1036 (1087)
..|++.+.. ++.+||.+.++.. .+.++|-.+++++.|||+|+|++||.++++.++..|+.+|+|... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555543 5789999988764 467899999999999999999999999999999999999988542 5789
Q ss_pred HHHHhccCcEEc
Q 001394 1037 AIWTNKFGFSMM 1048 (1087)
Q Consensus 1037 ~~wt~kfGF~~i 1048 (1087)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 64
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.76 E-value=7.2e-05 Score=82.23 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=69.8
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcC-ccEEEecCh-hhhHHHHHhcc
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLN-VKTLVLPSA-SEAQAIWTNKF 1043 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lg-V~~LvLpA~-~eA~~~wt~kf 1043 (1087)
+.++.+..+|+||+.|...-.+..+|+|-.|+|.|+|||+||+.+|+.++-..+-+-| ..-|+..+. +.|-.+|.+ +
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-i 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-I 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-h
Confidence 5566667777999999999999999999999999999999999999999876555555 445665444 678899999 9
Q ss_pred CcEEcCH
Q 001394 1044 GFSMMTE 1050 (1087)
Q Consensus 1044 GF~~i~~ 1050 (1087)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9998874
No 65
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.74 E-value=0.0002 Score=70.56 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=66.7
Q ss_pred EEEEeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhh-hcCccEEEec---ChhhhHHHHHhc
Q 001394 969 AILTVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLG-FLNVKTLVLP---SASEAQAIWTNK 1042 (1087)
Q Consensus 969 ~VL~~~~~vVsaA~lri~g--~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~-~lgV~~LvLp---A~~eA~~~wt~k 1042 (1087)
+++..+|++||.+.+.... ...+++... +.+.+| +|||+.++.++++.+. .+|+.+|++. .-..++.+|.+
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k- 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK- 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-
Confidence 3446789999999987665 457788755 899999 9999999999999987 5899999874 45688999999
Q ss_pred cCcEEcCHHH
Q 001394 1043 FGFSMMTEEE 1052 (1087)
Q Consensus 1043 fGF~~i~~~e 1052 (1087)
+||+.++...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999887543
No 66
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.74 E-value=8.7e-05 Score=89.22 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=65.0
Q ss_pred eCCEEEEEEEEEEecCceE-----------EEeeeee--------ccCcccCChhHHHHHHHHHHhhhcCccEEEecChh
Q 001394 973 VNQVVVSAGIFRIFGQELA-----------ELPLVAT--------SNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSAS 1033 (1087)
Q Consensus 973 ~~~~vVsaA~lri~g~~~A-----------EiplVAT--------~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~ 1033 (1087)
.++.+||-.+||....+.. ||-..++ .++|||||+|+.||+++|+.|++.|++.|+|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 3578899888887654322 5555544 68999999999999999999999999999999999
Q ss_pred hhHHHHHhccCcEEcCH
Q 001394 1034 EAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 1034 eA~~~wt~kfGF~~i~~ 1050 (1087)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99998764
No 67
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.71 E-value=1.2e-05 Score=67.00 Aligned_cols=43 Identities=47% Similarity=1.152 Sum_probs=36.1
Q ss_pred ccccccc---CCceEecCCCCCcccccccCCC----CCCCCCcccccccc
Q 001394 718 LCGICMD---GGDLLCCDSCPRAFHIDCVSLP----GIPSGTWHCRYCMN 760 (1087)
Q Consensus 718 ~C~VC~d---gGeLl~CD~CprafH~~CL~l~----~vP~G~W~C~~C~~ 760 (1087)
+|.+|+. .++++.||.|.+.||..|++++ ..+.+.|+|+.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4778886 6799999999999999999977 33456999999974
No 68
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.63 E-value=0.00031 Score=73.46 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=78.7
Q ss_pred EEEEEeCCEEEEEEEEEEe--c---CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhc
Q 001394 968 CAILTVNQVVVSAGIFRIF--G---QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNK 1042 (1087)
Q Consensus 968 ~~VL~~~~~vVsaA~lri~--g---~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~k 1042 (1087)
.+|...+|++|+..++--. + ....=|-.+||+|+|||||+|++||...++.|+.+|...+++--. -.+|. +
T Consensus 48 slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~-r 123 (171)
T COG3153 48 SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYS-R 123 (171)
T ss_pred eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---ccccc-c
Confidence 3455788999998877543 2 245667889999999999999999999999999999999998766 44674 4
Q ss_pred cCcEEcCHHHHHhHhccCCeeeeCCceeeeccCCCCccc
Q 001394 1043 FGFSMMTEEEQNKYRNDYPLMIFQGTSMLQKPVPKCRIV 1081 (1087)
Q Consensus 1043 fGF~~i~~~e~~~~~~~~~ll~F~GT~mLqK~l~~~~~~ 1081 (1087)
|||+......+.- . .- +|.+.+|-+.|..--+.
T Consensus 124 fGF~~~~~~~l~~---p--~~-~~~~~fl~~~L~~~~l~ 156 (171)
T COG3153 124 FGFEPAAGAKLYA---P--GP-VPDERFLALELGDGALE 156 (171)
T ss_pred cCcEEcccccccc---C--CC-CCCceEEEEEccCCccc
Confidence 9999987654322 1 12 67788888887664333
No 69
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.60 E-value=0.00033 Score=74.73 Aligned_cols=85 Identities=19% Similarity=0.154 Sum_probs=61.9
Q ss_pred ceEEEEEEeCC--EEEEEEEEEEec-------------------------------------CceEEEeeeeeccCcccC
Q 001394 965 GMYCAILTVNQ--VVVSAGIFRIFG-------------------------------------QELAELPLVATSNDCQGQ 1005 (1087)
Q Consensus 965 Gfy~~VL~~~~--~vVsaA~lri~g-------------------------------------~~~AEiplVAT~~~~RgQ 1005 (1087)
+...++|..++ +|++|+-+-..| -..+.|-+|||.|++|++
T Consensus 26 ~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~ 105 (196)
T PF13718_consen 26 NHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRM 105 (196)
T ss_dssp TEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SS
T ss_pred cceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcC
Confidence 45667778888 999999886664 236788999999999999
Q ss_pred ChhHHHHHHHHHHh-------------------------hhcCccEEEe--cChhhhHHHHHhccCcEEcCH
Q 001394 1006 GYFQSLFCCIEKLL-------------------------GFLNVKTLVL--PSASEAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 1006 G~gr~L~~aIE~~L-------------------------~~lgV~~LvL--pA~~eA~~~wt~kfGF~~i~~ 1050 (1087)
|||++|++.+++.+ +.-+|..|=. -+.++...||.+ .||.++--
T Consensus 106 G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 106 GYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp SHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred CHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999 4678887655 467899999999 99998743
No 70
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.54 E-value=0.00041 Score=71.68 Aligned_cols=83 Identities=10% Similarity=0.138 Sum_probs=66.2
Q ss_pred eEEEEEEeCCEEEEEEEEEEecC---ceEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecCh---hhhHHH
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQ---ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPSA---SEAQAI 1038 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~---~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~-lgV~~LvLpA~---~eA~~~ 1038 (1087)
.|.+++..++++||.+.|..... ..+||- +++.++|||||||+.++.++.+.+.. +|+.+|.+... .-+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 34444445789999999876543 346665 56899999999999999999999876 89999998765 467889
Q ss_pred HHhccCcEEcCH
Q 001394 1039 WTNKFGFSMMTE 1050 (1087)
Q Consensus 1039 wt~kfGF~~i~~ 1050 (1087)
+.+ +||+..+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 999 99997664
No 72
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.48 E-value=2.5e-05 Score=65.12 Aligned_cols=49 Identities=33% Similarity=0.861 Sum_probs=35.6
Q ss_pred ccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCch
Q 001394 806 GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCK 863 (1087)
Q Consensus 806 ~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~ 863 (1087)
+|.+|++. ...+.+|.|+.|.++||..|+.+.. .....+...|+|+ .|.
T Consensus 1 ~C~vC~~~------~~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C~-~C~ 49 (51)
T PF00628_consen 1 YCPVCGQS------DDDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYCP-NCR 49 (51)
T ss_dssp EBTTTTSS------CTTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSSH-HHH
T ss_pred eCcCCCCc------CCCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEECc-CCc
Confidence 38889883 2357899999999999999999642 1223444599994 554
No 73
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.47 E-value=4.4e-05 Score=88.62 Aligned_cols=121 Identities=29% Similarity=0.672 Sum_probs=75.4
Q ss_pred ccccccc-----cCCceEecCCCCCcccccccCCC---CCCC-------CCccccccccccc-cc------ce-------
Q 001394 717 DLCGICM-----DGGDLLCCDSCPRAFHIDCVSLP---GIPS-------GTWHCRYCMNTFQ-KE------KF------- 767 (1087)
Q Consensus 717 d~C~VC~-----dgGeLl~CD~CprafH~~CL~l~---~vP~-------G~W~C~~C~~~~~-ke------k~------- 767 (1087)
..|.||. +.|+++-||.|....|..|+|.. ++|. ..|||.-|+..+. .. ++
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetD 199 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETD 199 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccc
Confidence 3899997 46899999999999999999854 3443 4699999876532 11 11
Q ss_pred ---ecccccccccccccccccccccccceeeecccCCC---CCCccccccCCCCCCCCCCCcceeccC--CCCccCCCCC
Q 001394 768 ---VEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPDT---ELGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGC 839 (1087)
Q Consensus 768 ---v~~~~na~aaGrieGvdpieqi~kRCiRivk~~d~---e~g~C~vCk~~dfsks~f~~~tLL~CD--qCeraYHv~C 839 (1087)
|.|..+++. +.|+ .+.++-.+|--.+.+++. ....|..|...-|.+ -+..+.|| .|..+||++|
T Consensus 200 igrWvH~iCALY---vpGV-afg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fAR----tGvci~CdaGMCk~YfHVTC 271 (707)
T KOG0957|consen 200 IGRWVHAICALY---VPGV-AFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFAR----TGVCIRCDAGMCKEYFHVTC 271 (707)
T ss_pred hhhHHHHHHHhh---cCcc-ccccccccccccHHHhhhhhhccchhccccchhhhh----cceeeeccchhhhhhhhhhH
Confidence 112222211 1111 111121222111122221 124599999887776 35789999 7999999999
Q ss_pred CCCCCC
Q 001394 840 LKDHGM 845 (1087)
Q Consensus 840 L~~~gm 845 (1087)
....|+
T Consensus 272 AQk~Gl 277 (707)
T KOG0957|consen 272 AQKLGL 277 (707)
T ss_pred Hhhhcc
Confidence 998775
No 74
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.0007 Score=70.76 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=84.5
Q ss_pred CCCcceeceEEEEEEeC-CEEEEEEEEEEecC-----ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEec-
Q 001394 958 HRGQDYHGMYCAILTVN-QVVVSAGIFRIFGQ-----ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP- 1030 (1087)
Q Consensus 958 ~~~~df~Gfy~~VL~~~-~~vVsaA~lri~g~-----~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLp- 1030 (1087)
|....-.||+.+|++.+ |+++|-|++-.|.. .++|. .|-+++++||+|+|++|+.++...+..+|++.++-.
T Consensus 44 ~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I 122 (169)
T COG1247 44 FSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGI 122 (169)
T ss_pred HHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 33344457888888766 99999998887763 45555 688999999999999999999999999999987652
Q ss_pred -ChhhhHHHHHhccCcEEcCHHHHHhHhccCCeeeeCCceeeeccCCCC
Q 001394 1031 -SASEAQAIWTNKFGFSMMTEEEQNKYRNDYPLMIFQGTSMLQKPVPKC 1078 (1087)
Q Consensus 1031 -A~~eA~~~wt~kfGF~~i~~~e~~~~~~~~~ll~F~GT~mLqK~l~~~ 1078 (1087)
+...|.--...+|||...+....-- ...-.+=.+.++|+.|...
T Consensus 123 ~~~n~aSi~lh~~~GF~~~G~~~~vg----~k~g~wld~~~~~~~l~~~ 167 (169)
T COG1247 123 ESDNLASIALHEKLGFEEVGTFPEVG----DKFGRWLDLVLMQLLLEEG 167 (169)
T ss_pred cCCCcHhHHHHHHCCCEEeccccccc----cccceEEeeeeeehhhccc
Confidence 2233444455569999998743332 2223555777888887543
No 75
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.45 E-value=0.00085 Score=68.33 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=64.3
Q ss_pred EEEeCCEEEEEEEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhh-hcCccEEEecCh---hhhHHHHHhcc
Q 001394 970 ILTVNQVVVSAGIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLG-FLNVKTLVLPSA---SEAQAIWTNKF 1043 (1087)
Q Consensus 970 VL~~~~~vVsaA~lri~g~--~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~-~lgV~~LvLpA~---~eA~~~wt~kf 1043 (1087)
++..++++||.+.++.... ..+++.. .+.++|||||||+.++.++.+.+. .+|+++|.+... ..+..+|.+ +
T Consensus 71 ~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek-~ 148 (179)
T PRK10151 71 MIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR-N 148 (179)
T ss_pred EEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-C
Confidence 3356899999999876543 5789875 689999999999999999998776 578999887644 457788888 9
Q ss_pred CcEEcCHH
Q 001394 1044 GFSMMTEE 1051 (1087)
Q Consensus 1044 GF~~i~~~ 1051 (1087)
||+..+..
T Consensus 149 Gf~~~g~~ 156 (179)
T PRK10151 149 GFTLEGCL 156 (179)
T ss_pred CCEEEeEe
Confidence 99987654
No 77
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.43 E-value=0.001 Score=64.05 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=61.9
Q ss_pred eEEEEEEe--CCEEEEEEEEEEe--cCceEEEeeeeeccCcccCChhHHHHHHHHHHh-hhcCccEEEecCh---hhhHH
Q 001394 966 MYCAILTV--NQVVVSAGIFRIF--GQELAELPLVATSNDCQGQGYFQSLFCCIEKLL-GFLNVKTLVLPSA---SEAQA 1037 (1087)
Q Consensus 966 fy~~VL~~--~~~vVsaA~lri~--g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L-~~lgV~~LvLpA~---~eA~~ 1037 (1087)
.|.+++.. ++++||...++.. ....+||. +.+.++|||+|||+.++..+.+.+ ..+|+.+|.+... ..+..
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 44444443 3589999998544 46899999 779999999999999999999999 7999999988655 35567
Q ss_pred HHHhccCcE
Q 001394 1038 IWTNKFGFS 1046 (1087)
Q Consensus 1038 ~wt~kfGF~ 1046 (1087)
++.+ +||+
T Consensus 135 ~~~k-~GF~ 142 (142)
T PF13302_consen 135 LLEK-LGFE 142 (142)
T ss_dssp HHHH-TT-E
T ss_pred HHHH-cCCC
Confidence 7777 9995
No 78
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.33 E-value=0.00039 Score=72.32 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=67.0
Q ss_pred EEEEEeC--CEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhcc
Q 001394 968 CAILTVN--QVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKF 1043 (1087)
Q Consensus 968 ~~VL~~~--~~vVsaA~lri~g--~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kf 1043 (1087)
+.+|... .+|||-++|-..- ...--+-.|-|...+||||+|++||+..|.+++..|++.+.|.+..+ ..||++ +
T Consensus 57 sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-l 134 (225)
T KOG3397|consen 57 SLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-L 134 (225)
T ss_pred eeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-h
Confidence 3444433 5677766654333 24566788999999999999999999999999999999999988755 689999 9
Q ss_pred CcEEcCHHHHHh
Q 001394 1044 GFSMMTEEEQNK 1055 (1087)
Q Consensus 1044 GF~~i~~~e~~~ 1055 (1087)
||+.-+.-+...
T Consensus 135 GYe~c~Pi~~~~ 146 (225)
T KOG3397|consen 135 GYEKCDPIVHST 146 (225)
T ss_pred cccccCceeccc
Confidence 999877754433
No 79
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.18 E-value=0.00014 Score=80.92 Aligned_cols=44 Identities=36% Similarity=0.907 Sum_probs=38.4
Q ss_pred ccccc-cccCCceEecCC--CC-CcccccccCCCCCCCCCcccccccc
Q 001394 717 DLCGI-CMDGGDLLCCDS--CP-RAFHIDCVSLPGIPSGTWHCRYCMN 760 (1087)
Q Consensus 717 d~C~V-C~dgGeLl~CD~--Cp-rafH~~CL~l~~vP~G~W~C~~C~~ 760 (1087)
-+|.. |...|+|+-||. |+ .-||..|+|+...|.|.|||+.|+.
T Consensus 220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred EEEEecccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 34443 557899999998 99 9999999999999999999999985
No 80
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0043 Score=63.80 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=87.0
Q ss_pred hhHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEe-CCEEEEEEEEEEe-----cCceEEEee
Q 001394 922 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV-NQVVVSAGIFRIF-----GQELAELPL 995 (1087)
Q Consensus 922 ~~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~-~~~vVsaA~lri~-----g~~~AEipl 995 (1087)
+..|=.-++.|.++-+|..- |..+|-.+. |.+-.|.-.+.+.++. ++++||-|.+..+ +.+.--|-=
T Consensus 17 i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleD 89 (163)
T KOG3216|consen 17 ILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLED 89 (163)
T ss_pred HHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEEe
Confidence 34444555667777666542 233333322 3333444455555554 7899999988764 346667888
Q ss_pred eeeccCcccCChhHHHHHHHHHHhhhcCccEE---EecChhhhHHHHHhccCcEEcCH
Q 001394 996 VATSNDCQGQGYFQSLFCCIEKLLGFLNVKTL---VLPSASEAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 996 VAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~L---vLpA~~eA~~~wt~kfGF~~i~~ 1050 (1087)
+-++++|||+|+|+.|+..+-+.+..+|..++ ++.--.-|+.+|++ .|++....
T Consensus 90 lyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 90 LYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred eEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 99999999999999999999999999999875 55556789999999 99987665
No 81
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.93 E-value=0.00038 Score=84.53 Aligned_cols=44 Identities=34% Similarity=0.819 Sum_probs=38.0
Q ss_pred ccccccccC---CceEecCCCCCc-ccccccCCC--CCCCCCcccccccc
Q 001394 717 DLCGICMDG---GDLLCCDSCPRA-FHIDCVSLP--GIPSGTWHCRYCMN 760 (1087)
Q Consensus 717 d~C~VC~dg---GeLl~CD~Cpra-fH~~CL~l~--~vP~G~W~C~~C~~ 760 (1087)
-.|.+|.-. .-||+||.|+.+ ||.+||+++ .+|-+.|||+.|.-
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 469999854 368999999999 999999976 59999999999963
No 82
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.92 E-value=0.00043 Score=75.49 Aligned_cols=46 Identities=37% Similarity=0.969 Sum_probs=39.1
Q ss_pred cccccccccccC--CceEecCC--CCC-cccccccCCCCCCCCCcccccccc
Q 001394 714 ENDDLCGICMDG--GDLLCCDS--CPR-AFHIDCVSLPGIPSGTWHCRYCMN 760 (1087)
Q Consensus 714 endd~C~VC~dg--GeLl~CD~--Cpr-afH~~CL~l~~vP~G~W~C~~C~~ 760 (1087)
++.-+|. |.+. |+|+-||+ |.+ -||..|+|+...|.|.|||+.|+.
T Consensus 219 ~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 219 GEELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred CceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 3445776 8764 89999997 886 699999999999999999999974
No 83
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=96.82 E-value=0.00015 Score=67.39 Aligned_cols=43 Identities=30% Similarity=0.360 Sum_probs=34.9
Q ss_pred cceEecCCCCccCchhhhhccCcccccCCccceeccCCcchhhhhh
Q 001394 657 FGILCTCCNSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSI 702 (1087)
Q Consensus 657 ~GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I~~snG~SL~dl~~ 702 (1087)
..|.+. ++||||++||.|+|+.+.++|+.+|++ +|.+|..+..
T Consensus 35 kCI~~~--g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~ 77 (82)
T PF01342_consen 35 KCIQCE--GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIE 77 (82)
T ss_dssp S-EEET--TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHH
T ss_pred ceEeeC--CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHh
Confidence 345555 789999999999999999999999998 9999988764
No 84
>smart00258 SAND SAND domain.
Probab=96.76 E-value=0.00076 Score=61.51 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=39.2
Q ss_pred ccceEecCC---CCccCchhhhhccCcccccCCccceeccCCcchhhhhh
Q 001394 656 GFGILCTCC---NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSI 702 (1087)
Q Consensus 656 ~~GI~C~CC---~~~~SpSeFE~HAG~~srrkPy~~I~~snG~SL~dl~~ 702 (1087)
..||.+.|. ++||||++||.+||....++|..+|++ +|.+|..+..
T Consensus 20 ~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~ 68 (73)
T smart00258 20 KCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLME 68 (73)
T ss_pred hcCcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHH
Confidence 347777775 459999999999999999999999976 9999988864
No 85
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.70 E-value=0.00034 Score=55.60 Aligned_cols=34 Identities=38% Similarity=0.988 Sum_probs=20.8
Q ss_pred CceEecCCCCCcccccccCCCCCCCC-Cccccccc
Q 001394 726 GDLLCCDSCPRAFHIDCVSLPGIPSG-TWHCRYCM 759 (1087)
Q Consensus 726 GeLl~CD~CprafH~~CL~l~~vP~G-~W~C~~C~ 759 (1087)
..|+.|+.|.-++|+.|+|+..+|.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999988877 89999884
No 86
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.55 E-value=0.001 Score=72.60 Aligned_cols=45 Identities=40% Similarity=1.117 Sum_probs=36.7
Q ss_pred CccccccCCCCCCCCCCCcceeccC--CCCc-cCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILCD--QCER-EYHVGCLKDHGMEDLQELPKGKWLCCADCKR 864 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~CD--qCer-aYHv~CL~~~gm~~LkelP~g~WFC~~~C~~ 864 (1087)
.+| +|.+..| +.|+-|| .|++ |||..|+. |++.|+|.||| .+|+.
T Consensus 222 lYC-fCqqvSy-------GqMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 222 LYC-FCQQVSY-------GQMVACDNANCKREWFHLECVG------LKEPPKGKWYC-PECKK 269 (271)
T ss_pred eEE-Eeccccc-------ccceecCCCCCchhheeccccc------cCCCCCCcEeC-HHhHh
Confidence 457 6887643 5699999 6986 88999987 78899999999 58875
No 87
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.52 E-value=0.00093 Score=74.58 Aligned_cols=35 Identities=43% Similarity=1.017 Sum_probs=30.1
Q ss_pred cceeccCC--CC-ccCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001394 823 RTVILCDQ--CE-REYHVGCLKDHGMEDLQELPKGKWLCCADCKR 864 (1087)
Q Consensus 823 ~tLL~CDq--Ce-raYHv~CL~~~gm~~LkelP~g~WFC~~~C~~ 864 (1087)
+.|+-||. |+ .|||..|.- |..-|.|+|||+ .|..
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYCP-RCKA 267 (274)
T ss_pred ccccccCCCCCCcceEEEeccc------cccCCCCcccch-hhhh
Confidence 57999997 99 999999986 678899999997 5653
No 88
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.52 E-value=0.007 Score=67.73 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=69.8
Q ss_pred EEEEEE-eCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001394 967 YCAILT-VNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1045 (1087)
Q Consensus 967 y~~VL~-~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF 1045 (1087)
|+++.+ .++++|+|+++ +|.- |+-|||++.+||-|+.-.|+..+-.++-++|...||+-+-++-..++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGnv---ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGNV---IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccce---eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 444445 55999999994 5643 8999999999999999999999999999999999999999999999999 999
Q ss_pred EEcCHH
Q 001394 1046 SMMTEE 1051 (1087)
Q Consensus 1046 ~~i~~~ 1051 (1087)
..+...
T Consensus 111 ~~i~~~ 116 (352)
T COG3053 111 SEIASA 116 (352)
T ss_pred eEeecc
Confidence 998773
No 89
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.49 E-value=0.0047 Score=58.46 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=56.8
Q ss_pred EEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccE-EEec-ChhhhHHHHHhccCcEEc
Q 001394 971 LTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKT-LVLP-SASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 971 L~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~-LvLp-A~~eA~~~wt~kfGF~~i 1048 (1087)
|--+|.+||=.. -+..+||+--+|.|+|||||+.+.++....+.|..+|+.- ..+. +-...+.+-.+ +||..+
T Consensus 4 lgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~~ 78 (89)
T PF08444_consen 4 LGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIFM 78 (89)
T ss_pred cCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCeec
Confidence 445688888554 4678999999999999999999999999999999999984 2222 22344445455 888877
Q ss_pred C
Q 001394 1049 T 1049 (1087)
Q Consensus 1049 ~ 1049 (1087)
+
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 5
No 90
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.18 E-value=0.029 Score=62.71 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=54.5
Q ss_pred EeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcC
Q 001394 972 TVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMT 1049 (1087)
Q Consensus 972 ~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i~ 1049 (1087)
..+++|||.|+-.....+.+||- |+|.++|||||+++++-.++......-|+--.|=-+ ..+-----.||||+...
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFDF 246 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCcccc
Confidence 56899999887777777889995 799999999999999999999999999988777433 22222223359998643
No 91
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.08 E-value=0.0073 Score=51.32 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=39.7
Q ss_pred eeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCc
Q 001394 996 VATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGF 1045 (1087)
Q Consensus 996 VAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF 1045 (1087)
++|+++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55667888888 888
No 92
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.91 E-value=0.0098 Score=74.13 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=50.2
Q ss_pred EEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe--cChhhhHHHHHhccCcEEcCHH
Q 001394 991 AELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL--PSASEAQAIWTNKFGFSMMTEE 1051 (1087)
Q Consensus 991 AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvL--pA~~eA~~~wt~kfGF~~i~~~ 1051 (1087)
+.|=+|||+|++|++|||++|+..|.+.++ .|+..|-. -+.++...||.+ -||.++--+
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhls 592 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHLS 592 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEec
Confidence 667899999999999999999999999996 45555544 477899999999 999998653
No 93
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=95.91 E-value=0.032 Score=51.20 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=52.9
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHH
Q 001394 970 ILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAI 1038 (1087)
Q Consensus 970 VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~ 1038 (1087)
.+..+|+.+|...++. ..++..|--.-|.+++||||+++.||.++.+.++.-|.+-+ |.-+-+..+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~--p~C~y~~~~ 68 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV--PTCSYVAKY 68 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE--ETSHHHHHH
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE--EECHHHHHH
Confidence 4567788999999977 77899999999999999999999999999999999997643 444444433
No 94
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.88 E-value=0.024 Score=60.30 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=65.0
Q ss_pred eEEEEEEeCCEEEEEEEEEEe---cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe---cChhhhHHHH
Q 001394 966 MYCAILTVNQVVVSAGIFRIF---GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL---PSASEAQAIW 1039 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~---g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvL---pA~~eA~~~w 1039 (1087)
-|...+...+.+||-+.+|.- |..++=.-=|=+.+.|||+|+|+.||+.+|.++...+.+.++| ..-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 455555555689999999873 4345444445567889999999999999999999998887665 4556789999
Q ss_pred HhccCcEEcCH
Q 001394 1040 TNKFGFSMMTE 1050 (1087)
Q Consensus 1040 t~kfGF~~i~~ 1050 (1087)
.+ +||-+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99987665
No 95
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.88 E-value=0.051 Score=54.68 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=57.0
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh------hhhHHH
Q 001394 965 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA------SEAQAI 1038 (1087)
Q Consensus 965 Gfy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~------~eA~~~ 1038 (1087)
-+|++ .-|+.++||+.+.+.|. -|+|--+.|++.=||.|+|..|++.+.+.+. +|....+.+. ..+...
T Consensus 39 ~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~ 113 (128)
T PF12568_consen 39 RLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAA 113 (128)
T ss_dssp EEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHH
T ss_pred eEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHH
Confidence 45665 78999999999999874 7999999999999999999999999999994 5555555433 233444
Q ss_pred HHhccCcEEcC
Q 001394 1039 WTNKFGFSMMT 1049 (1087)
Q Consensus 1039 wt~kfGF~~i~ 1049 (1087)
+...+||...+
T Consensus 114 Fm~a~GF~~~~ 124 (128)
T PF12568_consen 114 FMQACGFSAQS 124 (128)
T ss_dssp HHHHHT-EE-S
T ss_pred HHHHcCccccC
Confidence 44459998754
No 96
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.055 Score=53.77 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=68.1
Q ss_pred ceEEEEEEeCC--EEEEEEEEEEec----CceEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecChh---h
Q 001394 965 GMYCAILTVNQ--VVVSAGIFRIFG----QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPSAS---E 1034 (1087)
Q Consensus 965 Gfy~~VL~~~~--~vVsaA~lri~g----~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~-lgV~~LvLpA~~---e 1034 (1087)
+.|.+++..++ ++||...+..+. .+.+++-..- .+.|+||||+...+.++.+.+-. +|+.+|++-..+ -
T Consensus 65 ~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~ 143 (187)
T COG1670 65 GAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEA 143 (187)
T ss_pred ceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHH
Confidence 45666656544 999999998655 5688887666 99999999999999999988666 999999886553 4
Q ss_pred hHHHHHhccCcEEcCHHHHH
Q 001394 1035 AQAIWTNKFGFSMMTEEEQN 1054 (1087)
Q Consensus 1035 A~~~wt~kfGF~~i~~~e~~ 1054 (1087)
+..++.+ +||+..+.....
T Consensus 144 S~rv~ek-~Gf~~eg~~~~~ 162 (187)
T COG1670 144 SIRVYEK-LGFRLEGELRQH 162 (187)
T ss_pred HHHHHHH-cCChhhhhhhhc
Confidence 4666777 999987765443
No 97
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.82 E-value=0.0032 Score=73.77 Aligned_cols=47 Identities=36% Similarity=0.962 Sum_probs=37.9
Q ss_pred CccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCC----CCcccCCCc
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPK----GKWLCCADC 862 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~----g~WFC~~~C 862 (1087)
-.|.+|++.. +.-.+++||.|...||++||.| +|..+|+ ..|.| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 4699999842 3456899999999999999994 5777775 56999 588
No 98
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.73 E-value=0.024 Score=54.75 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=57.5
Q ss_pred eceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChh
Q 001394 964 HGMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSAS 1033 (1087)
Q Consensus 964 ~Gfy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~ 1033 (1087)
.++|++ ..+|+.++.++....|.+..-|+-..|.+++||||+++.|+....+.++.-|.+ ++|.-+
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Cs 80 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCS 80 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--Ecccch
Confidence 356665 889999999999888999999999999999999999999999999999999975 344444
No 99
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.59 E-value=0.01 Score=61.21 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=51.4
Q ss_pred ceEEEeeeeeccCcccCChhHHHHHH-HHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 001394 989 ELAELPLVATSNDCQGQGYFQSLFCC-IEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 989 ~~AEiplVAT~~~~RgQG~gr~L~~a-IE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i~~ 1050 (1087)
.-+.|-.+|+.|+||.||++..|+.. |..+-..-=+++.+|=+-.-.++||++ |||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 34788899999999999999999877 444444455678888888999999999 99999998
No 100
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.16 E-value=0.01 Score=60.89 Aligned_cols=25 Identities=36% Similarity=1.107 Sum_probs=22.1
Q ss_pred cccccccCCC--CCCCCCccccccccc
Q 001394 737 AFHIDCVSLP--GIPSGTWHCRYCMNT 761 (1087)
Q Consensus 737 afH~~CL~l~--~vP~G~W~C~~C~~~ 761 (1087)
+||+.||.|| .+|+|+|+|+.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 5999999866 899999999999864
No 101
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=94.94 E-value=0.014 Score=74.82 Aligned_cols=54 Identities=26% Similarity=0.740 Sum_probs=42.7
Q ss_pred CCCccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCchhhHH
Q 001394 803 ELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINL 867 (1087)
Q Consensus 803 e~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~~I~~ 867 (1087)
....|.+|.+++.. ..+.++.||.|..++|..|.. .+-+|++.|+| ..|-....
T Consensus 218 ~D~~C~iC~~~~~~----n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~ 271 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQ----NSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQ 271 (1051)
T ss_pred CCccceeecccccC----CCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcC
Confidence 34679999998643 346899999999999999986 34578999999 77754443
No 102
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.93 E-value=0.0091 Score=70.65 Aligned_cols=43 Identities=33% Similarity=0.846 Sum_probs=36.0
Q ss_pred ccccccC-----CceEecCCCCCcccccccCCC------CCCCCCccccccccc
Q 001394 719 CGICMDG-----GDLLCCDSCPRAFHIDCVSLP------GIPSGTWHCRYCMNT 761 (1087)
Q Consensus 719 C~VC~dg-----GeLl~CD~CprafH~~CL~l~------~vP~G~W~C~~C~~~ 761 (1087)
|.+|..| ..|+.|++|..-||+.|+.+. ..+...|||..|...
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 8888854 389999999999999999754 346788999999864
No 103
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=94.87 E-value=0.024 Score=60.41 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=53.1
Q ss_pred eEEEeeeeeccCcccCChhHHHHHHHHHHhhhcC-ccEEEecCh---hhhHHHHHhccCcEEcCHH
Q 001394 990 LAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLN-VKTLVLPSA---SEAQAIWTNKFGFSMMTEE 1051 (1087)
Q Consensus 990 ~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lg-V~~LvLpA~---~eA~~~wt~kfGF~~i~~~ 1051 (1087)
+.-|-.++|.+.||..|+|+.|++.+.+.+...+ .+++.|.++ ..|+.||++ +||+.+...
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeecc
Confidence 5778899999999999999999999999999999 777777654 578888888 999988764
No 104
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=94.59 E-value=0.019 Score=59.02 Aligned_cols=26 Identities=38% Similarity=1.095 Sum_probs=22.4
Q ss_pred cCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001394 834 EYHVGCLKDHGMEDLQELPKGKWLCCADCKR 864 (1087)
Q Consensus 834 aYHv~CL~~~gm~~LkelP~g~WFC~~~C~~ 864 (1087)
.||+.||+ |+|.++|+|+|+|| .|..
T Consensus 1 g~H~~CL~----Ppl~~~P~g~W~Cp-~C~~ 26 (148)
T cd04718 1 GFHLCCLR----PPLKEVPEGDWICP-FCEV 26 (148)
T ss_pred CcccccCC----CCCCCCCCCCcCCC-CCcC
Confidence 49999999 57999999999996 6654
No 105
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=94.32 E-value=0.021 Score=69.47 Aligned_cols=50 Identities=28% Similarity=0.986 Sum_probs=42.0
Q ss_pred CCccccccCCCCCCCCCCCcceeccC--CCCccCCCCCCCCCCCCCcccCCCCCcccCCCchh
Q 001394 804 LGGCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKR 864 (1087)
Q Consensus 804 ~g~C~vCk~~dfsks~f~~~tLL~CD--qCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~~ 864 (1087)
+++|.+|.+-. +..++.|+.|| .|.-+.|..|.- +.++|.|.||| +.|..
T Consensus 5 VGGCCVCSDEr----GWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 5 VGGCCVCSDER----GWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCES 56 (900)
T ss_pred ccceeeecCcC----CCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhh
Confidence 37899998642 55578899999 699999999986 66889999999 78875
No 106
>smart00258 SAND SAND domain.
Probab=94.11 E-value=0.051 Score=49.88 Aligned_cols=50 Identities=28% Similarity=0.421 Sum_probs=40.5
Q ss_pred ECCeEEeecCCCCCCeeeChhhhhhhcCCCCCCCC-CceeccCCCcHHHHHHH
Q 001394 442 KGSGISCFCDDCKGNQVVTPAVFELHAGSSNKRPP-EYIYLENGKTLRDIMNV 493 (1087)
Q Consensus 442 ~~~GIlC~C~~C~~~~vvs~s~FE~HAGs~~rrp~-~~IyLeNG~SL~dv~~a 493 (1087)
..+|+.+-|-.|.+ +-+||++||.|||...-.-+ ..|.. ||.+|+.+|+.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 45699999999887 89999999999997544445 66754 79999999875
No 107
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=93.96 E-value=0.39 Score=52.90 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=84.0
Q ss_pred hHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEe-CCEEEEEEEEEEe---------------
Q 001394 923 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV-NQVVVSAGIFRIF--------------- 986 (1087)
Q Consensus 923 ~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~-~~~vVsaA~lri~--------------- 986 (1087)
..+..+..+=++.|- + .-|-++..+---+.++...|-...|.++... +|++||+++|...
T Consensus 17 ~~~~~~~~lR~~VFv---~-e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~ 92 (241)
T TIGR03694 17 ELLEEAFRLRYQVYC---E-ELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHC 92 (241)
T ss_pred HHHHHHHHHHHHHHH---H-hcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHh
Confidence 446778888888882 1 1122221110013344445544556655543 5899999998642
Q ss_pred ---------------cCceEEEeeeeeccCcccC--------C--------------------hhHHHHHHHHHHhhhcC
Q 001394 987 ---------------GQELAELPLVATSNDCQGQ--------G--------------------YFQSLFCCIEKLLGFLN 1023 (1087)
Q Consensus 987 ---------------g~~~AEiplVAT~~~~RgQ--------G--------------------~gr~L~~aIE~~L~~lg 1023 (1087)
+..++|+-++|+.++||+. | +...|+.++-+.+...|
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~G 172 (241)
T TIGR03694 93 SHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANG 172 (241)
T ss_pred ccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCC
Confidence 1369999999999999974 2 44679999999999999
Q ss_pred ccEEEecChhhhHHHHHhccCcE--EcCH
Q 001394 1024 VKTLVLPSASEAQAIWTNKFGFS--MMTE 1050 (1087)
Q Consensus 1024 V~~LvLpA~~eA~~~wt~kfGF~--~i~~ 1050 (1087)
+++++.-+.+....++.+ +||. ++++
T Consensus 173 i~~~~~v~~~~l~r~l~r-~G~~~~~lG~ 200 (241)
T TIGR03694 173 ITHWYAIMEPRLARLLSR-FGIQFRQVGP 200 (241)
T ss_pred CcEEEEEeCHHHHHHHHH-hCCceEEcCC
Confidence 999999888888888866 8864 4443
No 108
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=93.65 E-value=0.093 Score=60.43 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=64.5
Q ss_pred cceeceEEEEEEeCCEEEEEEEEEEe------cC---ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecC
Q 001394 961 QDYHGMYCAILTVNQVVVSAGIFRIF------GQ---ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPS 1031 (1087)
Q Consensus 961 ~df~Gfy~~VL~~~~~vVsaA~lri~------g~---~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA 1031 (1087)
+.+.++|.+ +.+.++++ .|++. |. ..|=|-.||+.|+|||+|+-|+|+....+..++.|+.-.+|.+
T Consensus 36 l~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P 111 (389)
T COG4552 36 LAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP 111 (389)
T ss_pred ccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc
Confidence 344555543 77777755 33333 33 3566789999999999999999999999999999999988865
Q ss_pred hhhhHHHHHhccCcEEcCH
Q 001394 1032 ASEAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 1032 ~~eA~~~wt~kfGF~~i~~ 1050 (1087)
. ..+||.+ |||..-+.
T Consensus 112 ~--s~~iYrK-fGye~asn 127 (389)
T COG4552 112 F--SGGIYRK-FGYEYASN 127 (389)
T ss_pred C--chhhHhh-ccccccce
Confidence 5 3679999 99987665
No 109
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=93.35 E-value=0.6 Score=44.79 Aligned_cols=66 Identities=6% Similarity=-0.175 Sum_probs=57.6
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecCh
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSA 1032 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~ 1032 (1087)
...++++.+|++||++.....+ +.+..-..+++++|++.+.|..|+..+.+.+.+.|++.+-+...
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4566778899999999775555 68889999999999999999999999999999999999887654
No 110
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.25 E-value=0.024 Score=75.20 Aligned_cols=56 Identities=29% Similarity=0.809 Sum_probs=45.9
Q ss_pred CCCCCccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCchhhHH
Q 001394 801 DTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINL 867 (1087)
Q Consensus 801 d~e~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~~I~~ 867 (1087)
......|.+|+.. +....++.|+.|..+||..|+++ .+..+|.++|||+ .|..-+.
T Consensus 1105 s~~~~~c~~cr~k------~~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C~-~c~~e~~ 1160 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRK------KQDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMCP-SCRKEHR 1160 (1404)
T ss_pred ccchhhhhhhhhc------ccchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccCC-ccchhhh
Confidence 3345789999984 34568999999999999999994 5889999999995 7876655
No 111
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=93.16 E-value=0.5 Score=50.39 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=59.8
Q ss_pred EEEEEEeCCEEEEEEEEEEec-------CceEEEeeeeeccCcccCChhHHHHHHHH-HHhhhcCccEEEecChhhhHHH
Q 001394 967 YCAILTVNQVVVSAGIFRIFG-------QELAELPLVATSNDCQGQGYFQSLFCCIE-KLLGFLNVKTLVLPSASEAQAI 1038 (1087)
Q Consensus 967 y~~VL~~~~~vVsaA~lri~g-------~~~AEiplVAT~~~~RgQG~gr~L~~aIE-~~L~~lgV~~LvLpA~~eA~~~ 1038 (1087)
|.+++.--+.+|++..+-.+. ..+--+.+..+.|+|||+|+++ |+..+. +.+... =...++-+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~-~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSV-DDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccC-CCceeeecCHHHHHH
Confidence 444444446788877664332 2488999999999999999997 555554 455553 345667788899999
Q ss_pred HHhccCcEEcCH
Q 001394 1039 WTNKFGFSMMTE 1050 (1087)
Q Consensus 1039 wt~kfGF~~i~~ 1050 (1087)
|.+-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999988887
No 112
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=93.10 E-value=0.27 Score=51.36 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=63.2
Q ss_pred EEE-eCCEEEEEEEEEEec-----CceEEEeeeeeccCcccCChhHHHHHHHHH-HhhhcCccEEEecCh---hhhHHHH
Q 001394 970 ILT-VNQVVVSAGIFRIFG-----QELAELPLVATSNDCQGQGYFQSLFCCIEK-LLGFLNVKTLVLPSA---SEAQAIW 1039 (1087)
Q Consensus 970 VL~-~~~~vVsaA~lri~g-----~~~AEiplVAT~~~~RgQG~gr~L~~aIE~-~L~~lgV~~LvLpA~---~eA~~~w 1039 (1087)
|.+ .+|.|||-.....+. +.-.+|-.+||...||+.|++++||....+ ++...+.+++-|.-. ..|..+|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 335 668999977766554 235789999999999999999999987554 455567778877655 5789999
Q ss_pred HhccCcEEcCH
Q 001394 1040 TNKFGFSMMTE 1050 (1087)
Q Consensus 1040 t~kfGF~~i~~ 1050 (1087)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998764
No 113
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=92.87 E-value=0.025 Score=52.81 Aligned_cols=56 Identities=25% Similarity=0.482 Sum_probs=41.2
Q ss_pred ceeeEEE-----CCeEEeecCCCCCCeeeChhhhhhhcCCCCCCCC-CceeccCCCcHHHHHHH
Q 001394 436 GLRGVVK-----GSGISCFCDDCKGNQVVTPAVFELHAGSSNKRPP-EYIYLENGKTLRDIMNV 493 (1087)
Q Consensus 436 ~L~G~I~-----~~GIlC~C~~C~~~~vvs~s~FE~HAGs~~rrp~-~~IyLeNG~SL~dv~~a 493 (1087)
.+.|++. ..|+...|-.+. .+-+||.+||.|||..+-.-+ ..|.. +|.+|..+|+.
T Consensus 17 ~~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 17 DVKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp TEEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred CeEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 3467764 456666677777 478999999999999666656 78888 99999988864
No 114
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=92.55 E-value=0.028 Score=74.68 Aligned_cols=48 Identities=33% Similarity=0.938 Sum_probs=40.4
Q ss_pred cccccccccccCC---ceEecCCCCCcccccccC--CCCCCCCCccccccccc
Q 001394 714 ENDDLCGICMDGG---DLLCCDSCPRAFHIDCVS--LPGIPSGTWHCRYCMNT 761 (1087)
Q Consensus 714 endd~C~VC~dgG---eLl~CD~CprafH~~CL~--l~~vP~G~W~C~~C~~~ 761 (1087)
.....|.+|.-.+ .++.|+.|.+.||..|+- +..+|.|+|+|+.|+..
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 3456899998543 789999999999999997 44889999999999854
No 115
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.07 E-value=0.063 Score=63.39 Aligned_cols=47 Identities=34% Similarity=0.839 Sum_probs=37.2
Q ss_pred CccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCc
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADC 862 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C 862 (1087)
+.|.+|...+... .++++.||.|+-+.|..|.- ..-+|+|.|+| +.|
T Consensus 194 ~~C~~c~~t~~eN----~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHNEN----SNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccccCC----cceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 4588998765433 46899999999999999986 34578999999 544
No 116
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=92.01 E-value=0.2 Score=52.15 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=47.7
Q ss_pred ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe---cChhhhHHHHHhccCcEEc
Q 001394 989 ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL---PSASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 989 ~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvL---pA~~eA~~~wt~kfGF~~i 1048 (1087)
.=+++--+++.|.||++|++..||+.||......+.-.+.| -.-.-|+.+|++ |||.+.
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 35778889999999999999999999999987775443333 344679999999 999763
No 117
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=91.26 E-value=0.15 Score=49.01 Aligned_cols=33 Identities=24% Similarity=0.732 Sum_probs=28.5
Q ss_pred CccccccCCCCCCCCCCCcceeccCC--CCccCCCCCCCCCCC
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILCDQ--CEREYHVGCLKDHGM 845 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~CDq--CeraYHv~CL~~~gm 845 (1087)
..|.+|+.. .+.+++|.. |.++||+.|+...+.
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 569999984 467999998 999999999988764
No 118
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=90.72 E-value=0.19 Score=59.65 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=44.6
Q ss_pred ccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCH
Q 001394 999 SNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMTE 1050 (1087)
Q Consensus 999 ~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i~~ 1050 (1087)
...+|+||||+.||...|+.+++-|..++.+-+...+-..|.+ |||...++
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 5789999999999999999999999998877777777777876 99987664
No 119
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=89.64 E-value=1.9 Score=45.81 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=65.4
Q ss_pred CCCCcce-eceEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeeeeeccCccc------CChh
Q 001394 957 SHRGQDY-HGMYCAILTVNQVVVSAGIFRIF---------------------GQELAELPLVATSNDCQG------QGYF 1008 (1087)
Q Consensus 957 ~~~~~df-~Gfy~~VL~~~~~vVsaA~lri~---------------------g~~~AEiplVAT~~~~Rg------QG~g 1008 (1087)
++...|- .-.|.+++. +|+++|+++|... +.+++|+=+++++++.++ .-+.
T Consensus 36 E~DqyD~~~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~ 114 (182)
T PF00765_consen 36 EIDQYDDPDAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVT 114 (182)
T ss_dssp E--TTGCTT-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THH
T ss_pred EeeecCCCCCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHH
Confidence 3444432 356777665 5999999998764 257999999999988542 2367
Q ss_pred HHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001394 1009 QSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1047 (1087)
Q Consensus 1009 r~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~ 1047 (1087)
..|+.++-+.+.+.|+++++.-+..-...++.+ +||..
T Consensus 115 ~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 115 MELLLGMVEFALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp HHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 899999999999999999998888778888888 99875
No 120
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=89.47 E-value=0.14 Score=63.19 Aligned_cols=51 Identities=31% Similarity=0.730 Sum_probs=41.9
Q ss_pred CCccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCchhh
Q 001394 804 LGGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRI 865 (1087)
Q Consensus 804 ~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~~I 865 (1087)
.-.|.+|..+|. .....|++||.|--..|..|.- +.++|.+.|.| ..|...
T Consensus 271 dviCDvCrspD~----e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Calg 321 (893)
T KOG0954|consen 271 DVICDVCRSPDS----EEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCALG 321 (893)
T ss_pred cceeceecCCCc----cccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhcccc
Confidence 345999998763 3357899999999999999986 67899999999 677654
No 121
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=88.85 E-value=2.4 Score=45.93 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=80.2
Q ss_pred hHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcce-eceEEEEEEeCCEEEEEEEEEEe---------------
Q 001394 923 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDY-HGMYCAILTVNQVVVSAGIFRIF--------------- 986 (1087)
Q Consensus 923 ~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df-~Gfy~~VL~~~~~vVsaA~lri~--------------- 986 (1087)
..+.++..+=|+.|-- .-|-++ |. .-|.++...|. .-.|.+....+|++||+++|-..
T Consensus 16 ~~l~~~~rLR~~VF~~----elgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~ 89 (207)
T PRK13834 16 SLLKQMHRLRARVFGG----RLGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLP 89 (207)
T ss_pred HHHHHHHHHHHHHhcc----ccCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcC
Confidence 3467777777888831 122232 11 11333444443 34576666678899999987321
Q ss_pred ------cCceEEEeeeeeccCcc---cCC----hhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEE
Q 001394 987 ------GQELAELPLVATSNDCQ---GQG----YFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSM 1047 (1087)
Q Consensus 987 ------g~~~AEiplVAT~~~~R---gQG----~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~ 1047 (1087)
..+++|+-++|+++.++ +.+ +...|+.++-+.+...|+++++.-..+-...++.+ +||..
T Consensus 90 ~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 90 AGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 25799999999999863 222 55789999999999999999997777767777766 88653
No 122
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=85.45 E-value=1.6 Score=46.32 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=52.5
Q ss_pred eEEEEEEeCCEEEEEEEEEEecCc-----eEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChh
Q 001394 966 MYCAILTVNQVVVSAGIFRIFGQE-----LAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSAS 1033 (1087)
Q Consensus 966 fy~~VL~~~~~vVsaA~lri~g~~-----~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~ 1033 (1087)
.|.+|-+ ++++||.-.||-.=.+ ..+| --+|+|+.||+||++.++.-..+.++.+|++.+.+-+..
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~ 140 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDK 140 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5666645 8999999999874322 1222 246999999999999999999999999999999887764
No 123
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=83.33 E-value=2.4 Score=41.18 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=41.0
Q ss_pred EeCCEEEEEEEEEEec--CceEEEeeeeeccCcccCChhHHHHHHHHHHh
Q 001394 972 TVNQVVVSAGIFRIFG--QELAELPLVATSNDCQGQGYFQSLFCCIEKLL 1019 (1087)
Q Consensus 972 ~~~~~vVsaA~lri~g--~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L 1019 (1087)
+.++...+||.+..-+ .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5567788888886644 58999999999999999999999999998763
No 124
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=81.83 E-value=3.4 Score=46.99 Aligned_cols=68 Identities=26% Similarity=0.470 Sum_probs=41.3
Q ss_pred hhhHHHhhcCCCCCcEEEEEecCcCCCCcccceeeEEECC------eEEeecCCCCCCeeeChhhhhhhcCC-CCCCCCC
Q 001394 405 SKLKNFLESGILEGMSVMYIRGSKVKGPGVSGLRGVVKGS------GISCFCDDCKGNQVVTPAVFELHAGS-SNKRPPE 477 (1087)
Q Consensus 405 ~~vk~Ll~tGlLeG~~V~Y~~~~~~rg~g~~~L~G~I~~~------GIlC~C~~C~~~~vvs~s~FE~HAGs-~~rrp~~ 477 (1087)
++...-+.+.+++-+|-.+-.+. |+.-+...|+...- -|+|-|. | .-+||.+|=.|||. ..-||-.
T Consensus 209 ~~~~~~~~~~~~~~mp~v~t~g~---gpng~~i~g~ly~y~~~~~v~i~c~ch---g-~~~~~~efv~h~~~~~~~~p~~ 281 (284)
T PF07897_consen 209 TNSGGDGSRNMMEDMPCVSTTGD---GPNGKRIEGFLYKYGKGEEVRIVCVCH---G-SFLSPAEFVKHAGGGDVANPLR 281 (284)
T ss_pred ccccccccccccccCCceeeccC---CCCCceeeEEEEEecCCCeEEEEEEec---C-CCCCHHHHHHhcCCCCcCCchh
Confidence 33333344445566664443221 11113456766443 2778777 4 47999999999998 5568889
Q ss_pred ce
Q 001394 478 YI 479 (1087)
Q Consensus 478 ~I 479 (1087)
||
T Consensus 282 hi 283 (284)
T PF07897_consen 282 HI 283 (284)
T ss_pred cc
Confidence 88
No 125
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=78.73 E-value=3 Score=44.31 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=46.3
Q ss_pred eEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccC
Q 001394 990 LAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFG 1044 (1087)
Q Consensus 990 ~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfG 1044 (1087)
+||+.+.|++|+.+|.|+++.+ .++--.|+.|||..-|.--.......+++ |+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R-~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER-LC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH-Hh
Confidence 8999999999999999999976 68889999999998887777777777776 54
No 126
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=78.15 E-value=0.78 Score=42.46 Aligned_cols=48 Identities=25% Similarity=0.534 Sum_probs=32.9
Q ss_pred CccccccCCCCCCCCCCCcceeccCC--CCccCCCCCCCCCCCCCccc--CCCCCcccCC
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILCDQ--CEREYHVGCLKDHGMEDLQE--LPKGKWLCCA 860 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~CDq--CeraYHv~CL~~~gm~~Lke--lP~g~WFC~~ 860 (1087)
..|.+|+.. .|..+.|.. |.+.||+.|+...+...... ......||+.
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C~~ 88 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFCPK 88 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEChh
Confidence 459999974 267899985 99999999999876432111 1124567764
No 127
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=77.24 E-value=6.8 Score=44.57 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=62.8
Q ss_pred EEEE-eCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhh--hHHHHHhccCc
Q 001394 969 AILT-VNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASE--AQAIWTNKFGF 1045 (1087)
Q Consensus 969 ~VL~-~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~e--A~~~wt~kfGF 1045 (1087)
++++ .+|++|+++.+..++. .+.....++.+++|..+-.-.|+-.+.+.+.+.|++++-+..... -.-.|+++|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4446 6899999888766654 455568899999999999999999999999999999999876432 22336667899
Q ss_pred EEcCH
Q 001394 1046 SMMTE 1050 (1087)
Q Consensus 1046 ~~i~~ 1050 (1087)
++++-
T Consensus 277 ~~~~l 281 (330)
T TIGR03019 277 EPQPL 281 (330)
T ss_pred eeccc
Confidence 87543
No 128
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=76.00 E-value=0.58 Score=37.43 Aligned_cols=30 Identities=37% Similarity=1.067 Sum_probs=15.7
Q ss_pred cceeccCCCCccCCCCCCCCCCCCCcccCCCC-Cccc
Q 001394 823 RTVILCDQCEREYHVGCLKDHGMEDLQELPKG-KWLC 858 (1087)
Q Consensus 823 ~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g-~WFC 858 (1087)
+.|+.|+.|.-..|..|..- ...|.+ .|+|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv------~~~~~~~~W~C 32 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV------SEVPDGDDWLC 32 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS-----
T ss_pred CceEEeCCCCCcCChhhCCc------ccCCCCCcEEC
Confidence 35899999999999999863 233444 6999
No 129
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=73.65 E-value=2.9 Score=49.89 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=39.4
Q ss_pred cccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCc---ccC----CCCCcccCCCchhh---HHHHHHHh
Q 001394 807 CVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDL---QEL----PKGKWLCCADCKRI---NLALQKLV 873 (1087)
Q Consensus 807 C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~L---kel----P~g~WFC~~~C~~I---~~~LqkLV 873 (1087)
|.+|++-|+.. ++=..|.||.|..|-|..|.-.+.+.-. ..- .+..|+| .-|.+. ...+.+++
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~seLlG~vk~vf 203 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTSELLGFVKKVF 203 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChhhHHHHHHHHH
Confidence 88998876654 3345799999999999999766543210 111 1234555 888754 34444443
No 130
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=73.52 E-value=2.4 Score=38.88 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=24.8
Q ss_pred EEeeeeeccCcccCChhHHHHHHHHHHh
Q 001394 992 ELPLVATSNDCQGQGYFQSLFCCIEKLL 1019 (1087)
Q Consensus 992 EiplVAT~~~~RgQG~gr~L~~aIE~~L 1019 (1087)
=|.+|.|.+.+|++|++++||+++-...
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 3788999999999999999999988763
No 131
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=73.00 E-value=6.6 Score=38.19 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=37.6
Q ss_pred EeCCEEEEEEEEEEec-CceEEEeeeeeccCcccCChhHHHHHHHHHHh
Q 001394 972 TVNQVVVSAGIFRIFG-QELAELPLVATSNDCQGQGYFQSLFCCIEKLL 1019 (1087)
Q Consensus 972 ~~~~~vVsaA~lri~g-~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L 1019 (1087)
+.++..=+||.+..-. .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3444455566664433 47999999999999999999999999998774
No 132
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=71.68 E-value=9.6 Score=39.13 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=46.1
Q ss_pred eccCcccCChhHHHHHHHHHHhhhcCccEEEec----ChhhhHHHHHhccCcEEcCHHHHHhH
Q 001394 998 TSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLP----SASEAQAIWTNKFGFSMMTEEEQNKY 1056 (1087)
Q Consensus 998 T~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLp----A~~eA~~~wt~kfGF~~i~~~e~~~~ 1056 (1087)
|-...||.|.+|+|.+.+-..+...|..+|++. -...|...+...|||+.++..++.-.
T Consensus 92 VA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihgg 154 (167)
T COG3818 92 VASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHGG 154 (167)
T ss_pred EEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEecc
Confidence 334568999999999999999999999998873 22355666677799999998665443
No 133
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.03 E-value=3.2 Score=36.41 Aligned_cols=28 Identities=32% Similarity=0.896 Sum_probs=24.8
Q ss_pred cccccccc----CCceEecCCCCCcccccccC
Q 001394 717 DLCGICMD----GGDLLCCDSCPRAFHIDCVS 744 (1087)
Q Consensus 717 d~C~VC~d----gGeLl~CD~CprafH~~CL~ 744 (1087)
..|.+|++ +++++.|..|...||.+|+.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 46999984 78999999999999999985
No 134
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=65.84 E-value=24 Score=35.84 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=53.9
Q ss_pred ceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEE
Q 001394 965 GMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLV 1028 (1087)
Q Consensus 965 Gfy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~Lv 1028 (1087)
+-+.+-...+|++|++|.+.+....+.-|=.+- +|++....+|...+-.-.+.++++|.+.+-
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 444455579999999999999888877776665 789999999999999999999999999998
No 135
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=65.82 E-value=4.8 Score=46.18 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=58.4
Q ss_pred ccccccc-cCCceEecCCCCCcccccccCCCCCCCCCcccccccccccccceecccccccccccccccccccccccceee
Q 001394 717 DLCGICM-DGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIR 795 (1087)
Q Consensus 717 d~C~VC~-dgGeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~~kek~v~~~~na~aaGrieGvdpieqi~kRCiR 795 (1087)
-.|-.|. +++....|-.|.-.+|-.=..+.-...+.+.|.-|...+.+-.. +....+-.++..+. ..
T Consensus 56 ~sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc-----~l~~~~~~~n~~N~--YN----- 123 (345)
T KOG2752|consen 56 FSCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSC-----NLLEDKDAENSENL--YN----- 123 (345)
T ss_pred eEeecccCChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccc-----ccccccccccchhh--hh-----
Confidence 3566666 44467777777777775544444455678888777665443211 00000000000000 00
Q ss_pred ecccCCCCCCccccccCCCCCCCCCCCcceeccCCCCccCC-CCCCCCC
Q 001394 796 IVQTPDTELGGCVLCRGRDFCKSRFGRRTVILCDQCEREYH-VGCLKDH 843 (1087)
Q Consensus 796 ivk~~d~e~g~C~vCk~~dfsks~f~~~tLL~CDqCeraYH-v~CL~~~ 843 (1087)
...+-.+| .|.........-.++.|++|--|+-||| -+|++..
T Consensus 124 ----hNfqG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 124 ----HNFQGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ----hhhcceeE-EecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 00001233 4554433322234678999999999999 8898864
No 136
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=64.16 E-value=5.3 Score=50.05 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=38.3
Q ss_pred CCCchhhhhcCCCCCCcceeceEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHh
Q 001394 945 KLDLIPAMVYGRSHRGQDYHGMYCAILTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLL 1019 (1087)
Q Consensus 945 G~DLIP~MVYg~~~~~~df~Gfy~~VL~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L 1019 (1087)
+-||||+.|- ..|.+.+|.++|= |.|-+|||+|+|++-|||.+-++-|.+..
T Consensus 592 ~GdlIpW~vs-eQf~D~~F~~l~G----------------------aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 592 AGDLIPWTVS-EQFQDEDFPKLSG----------------------ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred cCCccceehh-hhhcccchhcccC----------------------ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 4688887663 3455555544332 56778999999999999999888887764
No 137
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=63.76 E-value=14 Score=38.64 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=40.7
Q ss_pred eEEEeeeeeccCcccCChhHHHHHHHHHHhhh-cCccEEEecC--h-hhhHHHHHhccCcEEc
Q 001394 990 LAELPLVATSNDCQGQGYFQSLFCCIEKLLGF-LNVKTLVLPS--A-SEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 990 ~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~-lgV~~LvLpA--~-~eA~~~wt~kfGF~~i 1048 (1087)
++|+-++---|..||+|||+..|.++..++.+ +++.....-. + ...+.++.+ |+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk-~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKK-FLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHH-hhheee
Confidence 46777777789999999999999999988755 4555544433 2 233455555 999754
No 138
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=63.27 E-value=2.7 Score=39.89 Aligned_cols=47 Identities=34% Similarity=0.800 Sum_probs=31.1
Q ss_pred cccccccccc-----------CC---ceEecCCCCCcccccccC-CCCCCCCCcccccccccc
Q 001394 715 NDDLCGICMD-----------GG---DLLCCDSCPRAFHIDCVS-LPGIPSGTWHCRYCMNTF 762 (1087)
Q Consensus 715 ndd~C~VC~d-----------gG---eLl~CD~CprafH~~CL~-l~~vP~G~W~C~~C~~~~ 762 (1087)
+|+.|.||.. +| .++++ .|...||..|+- +-......-.||.||..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 3677777763 23 24444 499999999985 223334456999999754
No 139
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=61.96 E-value=3.9 Score=35.85 Aligned_cols=36 Identities=22% Similarity=0.645 Sum_probs=28.4
Q ss_pred CccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCC
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGM 845 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm 845 (1087)
..|.+|+.. ....+.+++|..|..-||-.|....+.
T Consensus 6 ~~C~~Cg~~-----~~~~dDiVvCp~CgapyHR~C~~~~g~ 41 (54)
T PF14446_consen 6 CKCPVCGKK-----FKDGDDIVVCPECGAPYHRDCWEKAGG 41 (54)
T ss_pred ccChhhCCc-----ccCCCCEEECCCCCCcccHHHHhhCCc
Confidence 359999984 223578999999999999999876553
No 140
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=60.54 E-value=31 Score=35.17 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=57.9
Q ss_pred EEEEEeCCEEEEEEEEE--Eec-----CceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHH
Q 001394 968 CAILTVNQVVVSAGIFR--IFG-----QELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWT 1040 (1087)
Q Consensus 968 ~~VL~~~~~vVsaA~lr--i~g-----~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt 1040 (1087)
.+++..+|-+||-+.+- ++. -.++|+ -+..-|||+||||+...+|-.....+ .+-.+++--..|..||+
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~ef---FIi~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEF---FIVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchhe---EeeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 34557889999988753 221 235554 34457999999999999999876532 35567888889999999
Q ss_pred hccCcE-EcCHHHHHhHh
Q 001394 1041 NKFGFS-MMTEEEQNKYR 1057 (1087)
Q Consensus 1041 ~kfGF~-~i~~~e~~~~~ 1057 (1087)
+ +-+. .+..++.+..+
T Consensus 115 ~-~~~t~~i~~E~r~d~~ 131 (143)
T COG5628 115 R-VAETYPVVEEDRQDAR 131 (143)
T ss_pred h-hhcccccchhhhhccc
Confidence 9 5444 33445444444
No 141
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=58.24 E-value=5.7 Score=45.28 Aligned_cols=32 Identities=41% Similarity=0.787 Sum_probs=30.0
Q ss_pred ceEecCCCCccCchhhhhccCcccccCCccce
Q 001394 658 GILCTCCNSEVSPSQFEAHAGWASRRKPFQHI 689 (1087)
Q Consensus 658 GI~C~CC~~~~SpSeFE~HAG~~srrkPy~~I 689 (1087)
-|.|.|=+..+||.+|-.|||.....+|.++|
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 59999999999999999999998888999988
No 142
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=56.56 E-value=7.7 Score=47.02 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=40.6
Q ss_pred CccccccccccccCCceEecCCCCCcccccccCCCCCCCCCcccccccc
Q 001394 712 SKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMN 760 (1087)
Q Consensus 712 ~~endd~C~VC~dgGeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~ 760 (1087)
...+.+.|.+|.++|.+++|+.|..++|..|... ..|+..|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3456789999999999999999999999999864 66788888877763
No 143
>PRK00756 acyltransferase NodA; Provisional
Probab=55.90 E-value=18 Score=38.48 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=35.4
Q ss_pred ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEe
Q 001394 989 ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVL 1029 (1087)
Q Consensus 989 ~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvL 1029 (1087)
=+||+.+.|++|+..|.|+++.+ .++--.|++|||..-|-
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FG 123 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFG 123 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecc
Confidence 38999999999999999999977 68889999999986554
No 144
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=54.92 E-value=6.6 Score=51.32 Aligned_cols=45 Identities=24% Similarity=0.741 Sum_probs=37.8
Q ss_pred CccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCch
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCK 863 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~ 863 (1087)
..|.+|++ .+.+++|..|++.||..|.. +++.+.|...|.| .-|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~----hP~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVF----HPRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecC----CccccCCCccchh-hhhh
Confidence 46999987 36799999999999999998 4677889999999 5555
No 145
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=52.72 E-value=7.3 Score=35.40 Aligned_cols=46 Identities=35% Similarity=0.787 Sum_probs=18.1
Q ss_pred cccccccc----CCc--eEecC--CCCCcccccccC-----CC-CCC---CCCcccccccccc
Q 001394 717 DLCGICMD----GGD--LLCCD--SCPRAFHIDCVS-----LP-GIP---SGTWHCRYCMNTF 762 (1087)
Q Consensus 717 d~C~VC~d----gGe--Ll~CD--~CprafH~~CL~-----l~-~vP---~G~W~C~~C~~~~ 762 (1087)
..|.||.. .++ .+.|+ .|...||..||. .+ ... --.+.||.|..++
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 45888874 232 47798 899999999994 11 111 1236799998654
No 146
>PRK14852 hypothetical protein; Provisional
Probab=52.70 E-value=38 Score=44.73 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=55.1
Q ss_pred cCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEcCHH
Q 001394 987 GQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMMTEE 1051 (1087)
Q Consensus 987 g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i~~~ 1051 (1087)
|..++|+-.+|+++..|.+=+--.|+..+-..+...++..+++---+.=..||++-|||+.+++.
T Consensus 118 Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 118 GRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 35799999999988888766666777777666777899999999999999999999999999863
No 147
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=52.56 E-value=34 Score=37.09 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=48.2
Q ss_pred hhHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEeCCE--EEEEEEEEEecCceEEEeeeeec
Q 001394 922 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQV--VVSAGIFRIFGQELAELPLVATS 999 (1087)
Q Consensus 922 ~~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~~~~--vVsaA~lri~g~~~AEiplVAT~ 999 (1087)
.....+-+.+|-..| +|.+|= | -+.+---||++.-.+++. +||-=+=--...+---|--|-|.
T Consensus 25 ~~~yCqnLcLlaKLF---Ld~Ktl--------y----ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~l 89 (188)
T PF01853_consen 25 HKLYCQNLCLLAKLF---LDHKTL--------Y----YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILTL 89 (188)
T ss_dssp SHHHHHHHHHHHHTT----SSGCC--------T----T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE-
T ss_pred CchHHHHHHHHHHHH---hhCeEE--------E----eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhhc
Confidence 356788889999999 444432 1 112222355554344433 22211110011222356678999
Q ss_pred cCcccCChhHHHHHHHHHHhhhcC
Q 001394 1000 NDCQGQGYFQSLFCCIEKLLGFLN 1023 (1087)
Q Consensus 1000 ~~~RgQG~gr~L~~aIE~~L~~lg 1023 (1087)
|.||++|||+.|++.-=.+.+.-|
T Consensus 90 P~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 90 PPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred chhhhcchhhhhhhhHHHHhhccC
Confidence 999999999999987666655444
No 148
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=51.75 E-value=21 Score=40.97 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=47.8
Q ss_pred hHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEeC----CEEEEEEEEEEecCceEEEeeeee
Q 001394 923 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVN----QVVVSAGIFRIFGQELAELPLVAT 998 (1087)
Q Consensus 923 ~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~~----~~vVsaA~lri~g~~~AEiplVAT 998 (1087)
....+-+-.|-..| +|.+|- | .|...|..+||... ..+||-=+=--...+---|--|-|
T Consensus 101 ~~yCqnLcLlaKLF---LdhKtl--------y------yDV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIlt 163 (290)
T PLN03238 101 KVYCQNLCLLAKLF---LDHKTL--------Y------YDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILT 163 (290)
T ss_pred hhHHHHHHHHHHHh---hcCccc--------c------ccccceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEe
Confidence 35677778888888 444442 1 23345544444422 234332211011111123667899
Q ss_pred ccCcccCChhHHHHHHHHHHhhhcC
Q 001394 999 SNDCQGQGYFQSLFCCIEKLLGFLN 1023 (1087)
Q Consensus 999 ~~~~RgQG~gr~L~~aIE~~L~~lg 1023 (1087)
.|.||++|||+.|++.-=.+.+.-|
T Consensus 164 LPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 164 LPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cChhhhccHhHhHHHHHhHHhhccC
Confidence 9999999999999987655554444
No 149
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=50.73 E-value=7.2 Score=41.37 Aligned_cols=34 Identities=24% Similarity=0.594 Sum_probs=25.5
Q ss_pred cccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCC
Q 001394 807 CVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDH 843 (1087)
Q Consensus 807 C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~ 843 (1087)
|..|...+.+ ..-+.||.|..|..+||..||-+.
T Consensus 2 C~~C~~~g~~---~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDD---RNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCC---ccCCCeEEcCccChHHHhhhcCCc
Confidence 7788643211 224689999999999999999864
No 150
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.38 E-value=10 Score=44.40 Aligned_cols=46 Identities=28% Similarity=0.695 Sum_probs=32.9
Q ss_pred ccccccccC---CceEecCCCCCcccccccCCCCCCCCCccccccccccc
Q 001394 717 DLCGICMDG---GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQ 763 (1087)
Q Consensus 717 d~C~VC~dg---GeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~~ 763 (1087)
+.|.||.+. |+.+-==-|...||..|+++.-..- .-+||.|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCC
Confidence 699999863 5544446789999999998543322 346999987543
No 151
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=49.56 E-value=21 Score=41.75 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=38.9
Q ss_pred CcccCChhHHHHHHHHHHhhhc-CccEEEecChhhhHHHHHhccCcEEcCHH
Q 001394 1001 DCQGQGYFQSLFCCIEKLLGFL-NVKTLVLPSASEAQAIWTNKFGFSMMTEE 1051 (1087)
Q Consensus 1001 ~~RgQG~gr~L~~aIE~~L~~l-gV~~LvLpA~~eA~~~wt~kfGF~~i~~~ 1051 (1087)
.||.||||..||+..|+.+++- |-..+-+-+.......|.+ |||..-++-
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGPY 548 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGPY 548 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecChh
Confidence 6999999999999999999864 5556666566666677777 999876653
No 152
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=47.54 E-value=37 Score=32.38 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.1
Q ss_pred CceEEEeeeeeccCcccCChhHHHH
Q 001394 988 QELAELPLVATSNDCQGQGYFQSLF 1012 (1087)
Q Consensus 988 ~~~AEiplVAT~~~~RgQG~gr~L~ 1012 (1087)
..++||-++|+.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3689999999999999987776664
No 153
>PTZ00064 histone acetyltransferase; Provisional
Probab=45.59 E-value=24 Score=43.06 Aligned_cols=84 Identities=15% Similarity=-0.023 Sum_probs=48.0
Q ss_pred hhHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEeC----CEEEEEEEEEEecCceEEEeeee
Q 001394 922 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVN----QVVVSAGIFRIFGQELAELPLVA 997 (1087)
Q Consensus 922 ~~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~~----~~vVsaA~lri~g~~~AEiplVA 997 (1087)
.....+-|-+|-..| +|.+|- | .|...|..+||..- -.+||-=+=--...+---|--|-
T Consensus 329 ~klYCQNLCLLAKLF---LDhKTL--------Y------yDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACIL 391 (552)
T PTZ00064 329 TRGYAENLCYLAKLF---LDHKTL--------Q------YDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACIL 391 (552)
T ss_pred chhHHHHHHHHHHHh---ccCccc--------c------ccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEE
Confidence 345677888888888 444432 1 23345555555422 23333211100111122466789
Q ss_pred eccCcccCChhHHHHHHHHHHhhhc
Q 001394 998 TSNDCQGQGYFQSLFCCIEKLLGFL 1022 (1087)
Q Consensus 998 T~~~~RgQG~gr~L~~aIE~~L~~l 1022 (1087)
|.|.||++|||+.||+.-=.+.+.-
T Consensus 392 tLPpyQRKGYGklLIdfSYeLSrrE 416 (552)
T PTZ00064 392 TLPCYQRKGYGKLLVDLSYKLSLKE 416 (552)
T ss_pred ecchhhhcchhhhhhhhhhhhhhhc
Confidence 9999999999999998655554433
No 154
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=45.25 E-value=21 Score=42.45 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=45.9
Q ss_pred hhHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEeCCEEEEEEEEEEecC--ceEE---Eeee
Q 001394 922 RALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQVVVSAGIFRIFGQ--ELAE---LPLV 996 (1087)
Q Consensus 922 ~~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~~~~vVsaA~lri~g~--~~AE---iplV 996 (1087)
+....+-|=+|-..| +|++| +| .|...|..+||...|..=. +=.|-. .-++ |--|
T Consensus 207 ~k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte~d~~G~---VGYFSKEK~s~~~yNlaCI 266 (396)
T KOG2747|consen 207 QKLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTECDSYGC---VGYFSKEKESSENYNLACI 266 (396)
T ss_pred hhHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEecCCcce---eeeeccccccccccceeee
Confidence 355678888888888 33332 22 2445666666665543322 223332 2223 6788
Q ss_pred eeccCcccCChhHHHHHH
Q 001394 997 ATSNDCQGQGYFQSLFCC 1014 (1087)
Q Consensus 997 AT~~~~RgQG~gr~L~~a 1014 (1087)
-|.|.||++|||+.|++.
T Consensus 267 LtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 267 LTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eecChhhhcccchhhhhh
Confidence 999999999999999875
No 155
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=44.64 E-value=62 Score=34.83 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=47.5
Q ss_pred ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEEecChhhhHHHHHhccCcEEc
Q 001394 989 ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLVLPSASEAQAIWTNKFGFSMM 1048 (1087)
Q Consensus 989 ~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~LvLpA~~eA~~~wt~kfGF~~i 1048 (1087)
.++||.=+|.. +.|.++.|+..|-..|...|++.++.-|......+..+ +|+...
T Consensus 86 ~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~~ 140 (179)
T PF12261_consen 86 QIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPPT 140 (179)
T ss_pred heeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCce
Confidence 57787777665 58999999999999999999999999999999998887 887543
No 156
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.54 E-value=1e+02 Score=34.00 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=62.1
Q ss_pred eceEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeeeeecc--CcccCCh----hHHHHHHHH
Q 001394 964 HGMYCAILTVNQVVVSAGIFRIF---------------------GQELAELPLVATSN--DCQGQGY----FQSLFCCIE 1016 (1087)
Q Consensus 964 ~Gfy~~VL~~~~~vVsaA~lri~---------------------g~~~AEiplVAT~~--~~RgQG~----gr~L~~aIE 1016 (1087)
.-.|.+.+..+|+|+|+++|-.. .++++|.-++|+.. .-+++|= ...||..+-
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 34688777899999999987543 25799999999987 5555543 667999999
Q ss_pred HHhhhcCccEEEecChhhhHHHHHhccCc
Q 001394 1017 KLLGFLNVKTLVLPSASEAQAIWTNKFGF 1045 (1087)
Q Consensus 1017 ~~L~~lgV~~LvLpA~~eA~~~wt~kfGF 1045 (1087)
+.+...|++.|+.=...-.+.+..+ .||
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 9999999999997766555555555 555
No 157
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=42.96 E-value=8.4 Score=47.77 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=33.7
Q ss_pred cccccCCCCCCCCCCCcceeccCCCCccCCCCCCCCCCCCCcccCCCCCcccCCCchhhHHH
Q 001394 807 CVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKDHGMEDLQELPKGKWLCCADCKRINLA 868 (1087)
Q Consensus 807 C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~~gm~~LkelP~g~WFC~~~C~~I~~~ 868 (1087)
|.+|...+ -.-.|..++...|+.|...||..|++...+ -| ..|.++...
T Consensus 514 Ce~Cq~~~-iiyPF~~~~~~rC~~C~avfH~~C~~r~s~-----------~C-PrC~R~q~r 562 (580)
T KOG1829|consen 514 CELCQHND-IIYPFETRNTRRCSTCLAVFHKKCLRRKSP-----------CC-PRCERRQKR 562 (580)
T ss_pred eeeccCCC-cccccccccceeHHHHHHHHHHHHHhccCC-----------CC-CchHHHHHH
Confidence 66664333 223566778999999999999999985321 15 478877653
No 158
>PLN03239 histone acetyltransferase; Provisional
Probab=42.17 E-value=35 Score=40.17 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=47.2
Q ss_pred hHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEe-C---CEEEEEEEEEEecCceEEEeeeee
Q 001394 923 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV-N---QVVVSAGIFRIFGQELAELPLVAT 998 (1087)
Q Consensus 923 ~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~-~---~~vVsaA~lri~g~~~AEiplVAT 998 (1087)
....+-|-+|-..| +|.+|- | .|...|..+||.. | -.+||-=+=--...+---|--|-|
T Consensus 159 ~~yCQnLCLlaKLF---LdhKtl--------y------yDV~~FlFYVl~e~D~~g~h~vGYFSKEK~s~~~~NLaCIlt 221 (351)
T PLN03239 159 RIYCQNLCYIAKLF---LDHKTL--------Y------FDVDPFLFYVLCEVDERGFHPVGYYSKEKYSDVGYNLACILT 221 (351)
T ss_pred hHHHHHHHHHHHHh---hcCcce--------e------ccccceEEEEEEEecCCceEEEEEeeecccCCCCCceEEEEe
Confidence 45677888888888 444432 1 2334555555543 2 223221110000011123667899
Q ss_pred ccCcccCChhHHHHHHHHHHhhhcC
Q 001394 999 SNDCQGQGYFQSLFCCIEKLLGFLN 1023 (1087)
Q Consensus 999 ~~~~RgQG~gr~L~~aIE~~L~~lg 1023 (1087)
.|.||++|||+.|++.-=.+.+.-|
T Consensus 222 LPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 222 FPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred cChhhhcchhhhhHhhhhHhhhhcC
Confidence 9999999999999986555544333
No 159
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=41.77 E-value=2.5 Score=34.32 Aligned_cols=41 Identities=27% Similarity=0.601 Sum_probs=24.0
Q ss_pred ccccccccC---CceEecCCCCCcccccccCCCCCCCCCccccccc
Q 001394 717 DLCGICMDG---GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCM 759 (1087)
Q Consensus 717 d~C~VC~dg---GeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~ 759 (1087)
|.|.||.+. ++.+.--.|...||..|+.... .....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~--~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWL--KRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHH--HHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHH--HhCCcCCccC
Confidence 468899853 3333333499999999986110 1123788775
No 160
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=41.65 E-value=1.2e+02 Score=34.02 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=49.0
Q ss_pred EEeCCEEEEEEEEEEecCceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccEEE
Q 001394 971 LTVNQVVVSAGIFRIFGQELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKTLV 1028 (1087)
Q Consensus 971 L~~~~~vVsaA~lri~g~~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~Lv 1028 (1087)
.+.+|++||+|.+-+....+.-|-.+ =+|+|-..++|...+..-.++++.+|.+.+.
T Consensus 149 y~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 149 FRGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EEeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 35789999999999988888777554 4788888889998888888999999999998
No 161
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=41.00 E-value=11 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=19.7
Q ss_pred ccccccCCCCCCCCCCCcceeccCCCCccCCCCCCCC
Q 001394 806 GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLKD 842 (1087)
Q Consensus 806 ~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~~ 842 (1087)
.|.+|...=.-..+-++ .++=-.=+|.||+.|.+-
T Consensus 396 rCs~C~~PI~P~~G~~e--tvRvvamdr~fHv~CY~C 430 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKDE--TVRVVAMDRDFHVNCYKC 430 (468)
T ss_pred chhhccCCccCCCCCcc--eEEEEEccccccccceeh
Confidence 48899875333222221 222223468999999764
No 162
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=39.24 E-value=22 Score=43.59 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=38.7
Q ss_pred cccccccccccCCceEecCCCCCcccccccCCC-CCC--CCCcccccccc
Q 001394 714 ENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLP-GIP--SGTWHCRYCMN 760 (1087)
Q Consensus 714 endd~C~VC~dgGeLl~CD~CprafH~~CL~l~-~vP--~G~W~C~~C~~ 760 (1087)
..+-+|+-|.-.|..+.|+.|-|+||..|+.+. +.+ +..|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 345689999999999999999999999999754 232 45699988874
No 163
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=38.64 E-value=33 Score=41.64 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=45.6
Q ss_pred hHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEe-C---CEEEEEEEEEEecCceEEEeeeee
Q 001394 923 ALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTV-N---QVVVSAGIFRIFGQELAELPLVAT 998 (1087)
Q Consensus 923 ~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~-~---~~vVsaA~lri~g~~~AEiplVAT 998 (1087)
....+-|-+|-..| +|.+|- | .|...|..+||.. | -.+||-=+=--...+---|--|-|
T Consensus 252 ~~yCqnLcLlaKLF---LdhKtl--------y------ydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIlt 314 (450)
T PLN00104 252 KVYCQNLCYLAKLF---LDHKTL--------Y------YDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILT 314 (450)
T ss_pred hhHHHHHHHHHHHh---hcCcce--------e------ccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEe
Confidence 45677888888888 444431 1 2334555555542 2 244442221111111123677899
Q ss_pred ccCcccCChhHHHHHHHHHH
Q 001394 999 SNDCQGQGYFQSLFCCIEKL 1018 (1087)
Q Consensus 999 ~~~~RgQG~gr~L~~aIE~~ 1018 (1087)
.|.||++|||+.||+.-=.+
T Consensus 315 lP~yQrkGyG~~LI~~SYeL 334 (450)
T PLN00104 315 LPPYQRKGYGKFLIAFSYEL 334 (450)
T ss_pred cchhhhcchhheehhheehh
Confidence 99999999999998764444
No 164
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=37.82 E-value=28 Score=37.76 Aligned_cols=71 Identities=20% Similarity=0.387 Sum_probs=44.6
Q ss_pred CCCCceeccCCC-cHHHHHHHhcCCCchhHhhhhhh------------------ccc-------ccccccccccccCCCc
Q 001394 474 RPPEYIYLENGK-TLRDIMNVCKDSPLETLEKAVRM------------------VLG-------SSSMKKANFCLNCRVS 527 (1087)
Q Consensus 474 rp~~~IyLeNG~-SL~dv~~alk~~~l~~l~~~i~~------------------~~g-------~~~~~~l~~Cd~Cp~s 527 (1087)
.+.+|++-+.-. ||.|+++.-.+.=+..|...+.. .++ +...+....|..|.+-
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v 181 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQVKSGQLLPQLEKLVQFAEKHVYSCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSV 181 (202)
T ss_pred cchhhhhhCCceEcHHHHHHHhhchHHHHHHHHHHHHHHHHHHhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccc
Confidence 567887655444 99998877654433334433321 111 1112367899999999
Q ss_pred ccccccccccccccccccc
Q 001394 528 FSNAGVEELMLLCKSCVEL 546 (1087)
Q Consensus 528 fh~~c~~~g~w~C~~C~~~ 546 (1087)
||..|... -.|+-|.-.
T Consensus 182 ~H~~C~~~--~~CpkC~R~ 198 (202)
T PF13901_consen 182 FHKSCFRK--KSCPKCARR 198 (202)
T ss_pred cchhhcCC--CCCCCcHhH
Confidence 99999775 459888543
No 165
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=37.68 E-value=23 Score=38.39 Aligned_cols=35 Identities=26% Similarity=0.717 Sum_probs=28.7
Q ss_pred ccccccCCCCCCCCCCCcceeccCCCCccCCCCCCC
Q 001394 806 GCVLCRGRDFCKSRFGRRTVILCDQCEREYHVGCLK 841 (1087)
Q Consensus 806 ~C~vCk~~dfsks~f~~~tLL~CDqCeraYHv~CL~ 841 (1087)
.|.+|+..+. .-+|.....++|..|...||..|..
T Consensus 154 iCe~C~~~~~-IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 154 ICEICNSDDI-IFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCccCCCCCC-CCCCCCCCeeeCCcCccccchhhcC
Confidence 3899987642 2367777899999999999999997
No 166
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=37.12 E-value=17 Score=34.96 Aligned_cols=30 Identities=37% Similarity=0.831 Sum_probs=25.6
Q ss_pred cccccccccc-CCceEecCC--CCCcccccccC
Q 001394 715 NDDLCGICMD-GGDLLCCDS--CPRAFHIDCVS 744 (1087)
Q Consensus 715 ndd~C~VC~d-gGeLl~CD~--CprafH~~CL~ 744 (1087)
....|.+|+. .|-.+-|.. |..+||..|.-
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 3468999997 588899987 99999999974
No 167
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=35.11 E-value=49 Score=38.90 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=47.9
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe------------------------------------cCceEEEeeeeeccCcccCC
Q 001394 965 GMYCAILTV--NQVVVSAGIFRIF------------------------------------GQELAELPLVATSNDCQGQG 1006 (1087)
Q Consensus 965 Gfy~~VL~~--~~~vVsaA~lri~------------------------------------g~~~AEiplVAT~~~~RgQG 1006 (1087)
-.|.+||++ .|+|||++.|..- -++..||-.+-.+|+||+-|
T Consensus 58 ~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~ 137 (342)
T PF04958_consen 58 EGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGG 137 (342)
T ss_dssp -EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSH
T ss_pred cceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCc
Confidence 359999995 5999999976431 15678999999999999999
Q ss_pred hhHHHHHHHHHHh---hhcCccEEEecCh-----hhhHHHHHhccCcE
Q 001394 1007 YFQSLFCCIEKLL---GFLNVKTLVLPSA-----SEAQAIWTNKFGFS 1046 (1087)
Q Consensus 1007 ~gr~L~~aIE~~L---~~lgV~~LvLpA~-----~eA~~~wt~kfGF~ 1046 (1087)
.|+.|-.+=-=.+ ++.=-++++..-. .---|||.. +|-+
T Consensus 138 ~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWda-lG~~ 184 (342)
T PF04958_consen 138 NGRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWDA-LGRH 184 (342)
T ss_dssp HHHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHHH-TGGG
T ss_pred hHHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHHH-hhcc
Confidence 9998855422111 1111234443211 234699998 6633
No 168
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=34.06 E-value=11 Score=50.53 Aligned_cols=52 Identities=29% Similarity=0.668 Sum_probs=34.9
Q ss_pred CccccccccccccCC-ceEec--CCCCCcccccccC--------CCCCCCCCccccccccccc
Q 001394 712 SKENDDLCGICMDGG-DLLCC--DSCPRAFHIDCVS--------LPGIPSGTWHCRYCMNTFQ 763 (1087)
Q Consensus 712 ~~endd~C~VC~dgG-eLl~C--D~CprafH~~CL~--------l~~vP~G~W~C~~C~~~~~ 763 (1087)
..+.||.|.+|-... ....| -.|...||..|.- -|.+--|.-+||.|.+++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 356788899997432 11112 2699999999973 1234457789999998754
No 169
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=33.96 E-value=1.2e+02 Score=32.42 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=39.0
Q ss_pred EEEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCccE
Q 001394 980 AGIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVKT 1026 (1087)
Q Consensus 980 aA~lri~g~--~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~~ 1026 (1087)
-+.+||.+. ..+||=++.+++.+|.+++.=.|+..|-+.+...||-.
T Consensus 98 p~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 98 PATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred eEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 356778775 69999999999999999999999999999998888754
No 170
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=33.10 E-value=22 Score=32.90 Aligned_cols=29 Identities=34% Similarity=0.938 Sum_probs=25.2
Q ss_pred cccccccccC-CceEecCC--CCCcccccccC
Q 001394 716 DDLCGICMDG-GDLLCCDS--CPRAFHIDCVS 744 (1087)
Q Consensus 716 dd~C~VC~dg-GeLl~CD~--CprafH~~CL~ 744 (1087)
...|.+|... |-.+-|.. |.+.||..|.-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 3579999988 98898874 99999999984
No 171
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=32.67 E-value=74 Score=37.42 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=39.6
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001394 965 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1006 (1087)
Q Consensus 965 Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEiplVAT~~~~RgQG 1006 (1087)
--|.+||++ .|+|||++.|..- | ++..||-.+-.+++||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 468899996 5899999987542 1 4678999999999999999
Q ss_pred hhHHHHH
Q 001394 1007 YFQSLFC 1013 (1087)
Q Consensus 1007 ~gr~L~~ 1013 (1087)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (336)
T TIGR03244 134 NGRLLSK 140 (336)
T ss_pred chhhHHH
Confidence 9988754
No 172
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=31.24 E-value=76 Score=37.33 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=39.6
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001394 965 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1006 (1087)
Q Consensus 965 Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEiplVAT~~~~RgQG 1006 (1087)
-.|.+||++ .|+|||++.|... | ++..||-.+-.+|+||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 468899995 5899999987542 1 4678999999999999999
Q ss_pred hhHHHHH
Q 001394 1007 YFQSLFC 1013 (1087)
Q Consensus 1007 ~gr~L~~ 1013 (1087)
.|+.|-.
T Consensus 135 ~G~lLSr 141 (336)
T TIGR03245 135 AAELLSR 141 (336)
T ss_pred chhHHHH
Confidence 9987754
No 173
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=31.13 E-value=78 Score=37.22 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=40.1
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001394 965 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1006 (1087)
Q Consensus 965 Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEiplVAT~~~~RgQG 1006 (1087)
-.|.+||++ .|+|||++.|..- | ++..||-.+-.+|+||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 568999995 5899999987542 1 4678999999999999999
Q ss_pred hhHHHHHH
Q 001394 1007 YFQSLFCC 1014 (1087)
Q Consensus 1007 ~gr~L~~a 1014 (1087)
.|+.|-.+
T Consensus 134 ~G~LLSr~ 141 (335)
T TIGR03243 134 NGRLLSRS 141 (335)
T ss_pred chhhHHHH
Confidence 99887543
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.54 E-value=22 Score=42.74 Aligned_cols=42 Identities=19% Similarity=0.446 Sum_probs=27.9
Q ss_pred cccccccccc---CC-ceEecCCCCCcccccccCCCCCCCCCcccccccc
Q 001394 715 NDDLCGICMD---GG-DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMN 760 (1087)
Q Consensus 715 ndd~C~VC~d---gG-eLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~ 760 (1087)
.-..|.||.. .. ..+.=--|..+||-.|+... ++-.||.|+.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w----~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW----WDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhc----ccCcChhhhh
Confidence 3468999983 22 34445568999999999621 2346777764
No 175
>PRK10456 arginine succinyltransferase; Provisional
Probab=30.26 E-value=77 Score=37.39 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=39.5
Q ss_pred ceEEEEEEe--CCEEEEEEEEEEe-c-----------------------------------CceEEEeeeeeccCcccCC
Q 001394 965 GMYCAILTV--NQVVVSAGIFRIF-G-----------------------------------QELAELPLVATSNDCQGQG 1006 (1087)
Q Consensus 965 Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~~AEiplVAT~~~~RgQG 1006 (1087)
-.|.+||++ .|+|||++.|... | ++..||-.+-.+++||+-|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 468899995 5899999987542 1 4578999999999999999
Q ss_pred hhHHHHH
Q 001394 1007 YFQSLFC 1013 (1087)
Q Consensus 1007 ~gr~L~~ 1013 (1087)
.|+.|-.
T Consensus 136 ~G~LLSr 142 (344)
T PRK10456 136 NGYLLSK 142 (344)
T ss_pred chhHHHH
Confidence 9988754
No 176
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=28.85 E-value=59 Score=42.69 Aligned_cols=47 Identities=36% Similarity=0.962 Sum_probs=37.5
Q ss_pred ccccccccccCC--ceEecCCCCCcccccccCC--CCCCCCCccccccccc
Q 001394 715 NDDLCGICMDGG--DLLCCDSCPRAFHIDCVSL--PGIPSGTWHCRYCMNT 761 (1087)
Q Consensus 715 ndd~C~VC~dgG--eLl~CD~CprafH~~CL~l--~~vP~G~W~C~~C~~~ 761 (1087)
....|..|..+. .++.|++|...||..|..+ +.+++|.|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 345788888655 2349999999999999974 4788999999999754
No 177
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=28.42 E-value=28 Score=31.64 Aligned_cols=34 Identities=24% Similarity=0.730 Sum_probs=13.0
Q ss_pred ccccccCCCCCCCCCCCcceeccC--CCCccCCCCCCCC
Q 001394 806 GCVLCRGRDFCKSRFGRRTVILCD--QCEREYHVGCLKD 842 (1087)
Q Consensus 806 ~C~vCk~~dfsks~f~~~tLL~CD--qCeraYHv~CL~~ 842 (1087)
.|.+|...-. ..+....+.|+ .|...||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 4899987422 11233468998 9999999999974
No 178
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=28.10 E-value=33 Score=40.27 Aligned_cols=44 Identities=23% Similarity=0.534 Sum_probs=33.8
Q ss_pred ceeccCCCCccCCCCC--CCCCCCCCcccCCCCCcccCCCchhhHHHHHH
Q 001394 824 TVILCDQCEREYHVGC--LKDHGMEDLQELPKGKWLCCADCKRINLALQK 871 (1087)
Q Consensus 824 tLL~CDqCeraYHv~C--L~~~gm~~LkelP~g~WFC~~~C~~I~~~Lqk 871 (1087)
-++.|+.|..|||..| +. ++-....+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~---~~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVG---TAEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccC---chhhcCCccccccc-cccchhhhhhhh
Confidence 5799999999999999 65 33344445678999 899988766553
No 179
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.81 E-value=23 Score=40.17 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=31.6
Q ss_pred ccccccccccccCC----------ceEecCCCCCcccccccCCCCCCCCCcccccccc
Q 001394 713 KENDDLCGICMDGG----------DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMN 760 (1087)
Q Consensus 713 ~endd~C~VC~dgG----------eLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~ 760 (1087)
+-+|..|.||++.= +-..=-.|+..||..|+.-.-+-...-.||.|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKe 278 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKE 278 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHH
Confidence 34677999999531 1223336899999999963333333457999975
No 180
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=23.97 E-value=21 Score=35.05 Aligned_cols=49 Identities=22% Similarity=0.601 Sum_probs=31.1
Q ss_pred CccccccCCCCCCCCCCCcceecc------CCC---CccCCCCCCCCCC-CCCcccCCCCCcccCC
Q 001394 805 GGCVLCRGRDFCKSRFGRRTVILC------DQC---EREYHVGCLKDHG-MEDLQELPKGKWLCCA 860 (1087)
Q Consensus 805 g~C~vCk~~dfsks~f~~~tLL~C------DqC---eraYHv~CL~~~g-m~~LkelP~g~WFC~~ 860 (1087)
..|+.|++... +..+.| ..| ...|-..||...- ....+.+...+|.||.
T Consensus 8 ~~CHqCrqKt~-------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~ 66 (105)
T PF10497_consen 8 KTCHQCRQKTL-------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPK 66 (105)
T ss_pred CCchhhcCCCC-------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCC
Confidence 35999998643 223445 556 8889999987642 2222334567899984
No 181
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=23.87 E-value=2.1e+02 Score=34.07 Aligned_cols=139 Identities=15% Similarity=0.290 Sum_probs=87.2
Q ss_pred cceeeeecCCccCCCchhhhHHHHHHhhhccccCcccccCcCCCchhhhhcCCCCCCcceeceEEEEEEeCC--EEEEE-
Q 001394 904 DVRWRVLRGKKVDASDGTRALLSKAVSIFHDRFDPIIESASKLDLIPAMVYGRSHRGQDYHGMYCAILTVNQ--VVVSA- 980 (1087)
Q Consensus 904 dVkWqlLSy~~~s~~~e~~~~La~Al~If~EcFdPIiD~~SG~DLIP~MVYg~~~~~~df~Gfy~~VL~~~~--~vVsa- 980 (1087)
.+.|.-+- ++ ....|......+.|-+---.|+-.--|..|..+- +-+..-++.--|++.+...+ ++|+-
T Consensus 80 gf~W~tld---v~----~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~-Wal~~pg~~~~WHiGVRv~~s~kLVaFI 151 (421)
T KOG2779|consen 80 GFRWETLD---VS----DFKDLEELYNLLNENYVEDDDSMFRFDYSPEFLK-WALQPPGWKKEWHIGVRVKSSKKLVAFI 151 (421)
T ss_pred CceeeccC---Cc----cHhHHHHHHhhcccCCCCccccchhhhccHHHHH-hhhcCCCCccceEEEEEEecCCceEEEE
Confidence 56777653 21 2233566667777766322222222333333222 11233334445666666553 66653
Q ss_pred ----EEEEEecC--ceEEEeeeeeccCcccCChhHHHHHHHHHHhhhcCcc------EEEecChhhhHHHHHhc------
Q 001394 981 ----GIFRIFGQ--ELAELPLVATSNDCQGQGYFQSLFCCIEKLLGFLNVK------TLVLPSASEAQAIWTNK------ 1042 (1087)
Q Consensus 981 ----A~lri~g~--~~AEiplVAT~~~~RgQG~gr~L~~aIE~~L~~lgV~------~LvLpA~~eA~~~wt~k------ 1042 (1087)
++|||.+. ..+||-++.++...|++++.=.|+..|-+...--||- -++||+-...-.-|.+.
T Consensus 152 saiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsLNpkKL 231 (421)
T KOG2779|consen 152 SAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSLNPKKL 231 (421)
T ss_pred eccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccCChhHe
Confidence 57888886 6899999999999999999999999998876655553 46778777777777774
Q ss_pred --cCcEEcCH
Q 001394 1043 --FGFSMMTE 1050 (1087)
Q Consensus 1043 --fGF~~i~~ 1050 (1087)
.||+.++.
T Consensus 232 ~dv~Fs~l~~ 241 (421)
T KOG2779|consen 232 IDVGFSHLSR 241 (421)
T ss_pred eEeccccccc
Confidence 46665554
No 182
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=23.75 E-value=13 Score=44.43 Aligned_cols=35 Identities=29% Similarity=0.858 Sum_probs=25.7
Q ss_pred ccccccccC--CceEecCCCCCcccccccCCCCCCCCCccccccccc
Q 001394 717 DLCGICMDG--GDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNT 761 (1087)
Q Consensus 717 d~C~VC~dg--GeLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~ 761 (1087)
..|.-|+.+ |+-.-|..=++-||..|.. |..|...
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFt----------C~~C~r~ 311 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFT----------CRTCRRQ 311 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhccccee----------hHhhhhh
Confidence 378888854 6666677888999998864 6677643
No 183
>PHA02929 N1R/p28-like protein; Provisional
Probab=23.04 E-value=31 Score=38.56 Aligned_cols=46 Identities=26% Similarity=0.658 Sum_probs=30.4
Q ss_pred ccccccccccCC---c-----eEecCCCCCcccccccCCCCCCCCCcccccccccc
Q 001394 715 NDDLCGICMDGG---D-----LLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTF 762 (1087)
Q Consensus 715 ndd~C~VC~dgG---e-----Ll~CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~ 762 (1087)
.+..|.+|.+.- + +..=..|...||..|+... -...-.||.|+..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~W--l~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIW--KKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHH--HhcCCCCCCCCCEe
Confidence 457899998742 1 1223468999999999622 12234799999754
No 184
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=23.00 E-value=20 Score=27.61 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=27.1
Q ss_pred ccccccCC-ceEecCCCCCcccccccCCCCCCCCCcccccccc
Q 001394 719 CGICMDGG-DLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMN 760 (1087)
Q Consensus 719 C~VC~dgG-eLl~CD~CprafH~~CL~l~~vP~G~W~C~~C~~ 760 (1087)
|.+|.+.- ..+.-..|...||..|+.... ..+...|+.|+.
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~-~~~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWL-KSGKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHH-HhCcCCCCCCCC
Confidence 77787654 444455699999999985211 115667888874
No 185
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=22.69 E-value=17 Score=33.26 Aligned_cols=26 Identities=27% Similarity=0.664 Sum_probs=16.7
Q ss_pred CCCCCcccccccCCCCCCCCCccccccc
Q 001394 732 DSCPRAFHIDCVSLPGIPSGTWHCRYCM 759 (1087)
Q Consensus 732 D~CprafH~~CL~l~~vP~G~W~C~~C~ 759 (1087)
..|...||..|+.- .-.-...||.|+
T Consensus 48 ~~C~H~FH~~Ci~~--Wl~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQ--WLKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHH--HHTTSSB-TTSS
T ss_pred cccCCCEEHHHHHH--HHhcCCcCCCCC
Confidence 45999999999961 111223788885
No 186
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=20.97 E-value=28 Score=36.86 Aligned_cols=49 Identities=24% Similarity=0.480 Sum_probs=33.7
Q ss_pred cccccccccccCCceE--e--cCCCCCcccccccCCCCCCCCCcccccccccc
Q 001394 714 ENDDLCGICMDGGDLL--C--CDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTF 762 (1087)
Q Consensus 714 endd~C~VC~dgGeLl--~--CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~ 762 (1087)
..+..|.+|.++++.. . |.|--...|+.|+.-.-..++...|+.|..++
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 4567899999765321 1 45556677999997433356788999998643
No 187
>PHA02862 5L protein; Provisional
Probab=20.25 E-value=24 Score=36.82 Aligned_cols=47 Identities=30% Similarity=0.532 Sum_probs=34.2
Q ss_pred cccccccccCCc--eEe--cCCCCCcccccccCCCCCCCCCcccccccccc
Q 001394 716 DDLCGICMDGGD--LLC--CDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTF 762 (1087)
Q Consensus 716 dd~C~VC~dgGe--Ll~--CD~CprafH~~CL~l~~vP~G~W~C~~C~~~~ 762 (1087)
++.|.+|.++++ .-. |-|-.+-.|+.||.-.-.+++.=.|+.|+.++
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 468999997653 222 56778899999997333456778999998754
Done!