BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001395
(1086 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 175/251 (69%), Gaps = 1/251 (0%)
Query: 742 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 801
+L + + DF A + PSA+RE ++EVP+V WED+GG +VK +L E V++P +H + F
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Query: 802 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 861
+ G P G+L +GPPGC KTL+A+A+A+E NF+++KGPEL + W GESE VR +F
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563
Query: 862 AKARANAPSIIFFDEIDGLAAIR-GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920
KAR AP ++FFDE+D +A R G DG +DRV++Q+L E+DG+ + NV +I AT
Sbjct: 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 921 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 980
NRPD IDPA+LRPGR D+L+Y+ P+E R I + +LRK P + DV++ LA ++ G +
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683
Query: 981 GADISLICREA 991
GAD++ IC+ A
Sbjct: 684 GADLTEICQRA 694
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++DVGG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 890
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 950
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 951 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 15/205 (7%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621
ALRR GR DRE++I +P RLEIL M+ + D ++E ++
Sbjct: 356 ALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400
Query: 622 MATHGFVGADLAALCNEAALVCLRR 646
THG VGADLAALC+EAAL +R+
Sbjct: 401 NETHGHVGADLAALCSEAALQAIRK 425
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P+KGVL +GPPG GKT LA+ A++ N ++ GPE+++ +GESE + E+FD A Q+
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569
Query: 503 APAVVFIDELDAIAPARKDGGEEL---SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559
AP V+F DELD+IA AR + + R++ +L MDG+ V +I ATNRPD I
Sbjct: 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629
Query: 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619
+PA+ RPGRLD+ I I +P R+ IL A L + D ++E+
Sbjct: 630 DPAILRPGRLDQLIYI--------------PLPDEKSRVAILKANLRKSPVA-KDVDLEF 674
Query: 620 LSMATHGFVGADLAALCNEA 639
L+ T+GF GADL +C A
Sbjct: 675 LAKMTNGFSGADLTEICQRA 694
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 175/251 (69%), Gaps = 1/251 (0%)
Query: 742 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 801
+L + + DF A + PSA+RE ++EVP+V WED+GG +VK +L E V++P +H + F
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Query: 802 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 861
+ G P G+L +GPPGC KTL+A+A+A+E NF+++KGPEL + W GESE VR +F
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563
Query: 862 AKARANAPSIIFFDEIDGLAAIR-GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920
KAR AP ++FFDE+D +A R G DG +DRV++Q+L E+DG+ + NV +I AT
Sbjct: 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 921 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 980
NRPD IDPA+LRPGR D+L+Y+ P+E R I + +LRK P + DV++ LA ++ G +
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683
Query: 981 GADISLICREA 991
GAD++ IC+ A
Sbjct: 684 GADLTEICQRA 694
Score = 224 bits (570), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 890
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 950
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 951 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 15/205 (7%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621
ALRR GR DRE++I +P RLEIL M+ + D ++E ++
Sbjct: 356 ALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400
Query: 622 MATHGFVGADLAALCNEAALVCLRR 646
THG VGADLAALC+EAAL +R+
Sbjct: 401 NETHGHVGADLAALCSEAALQAIRK 425
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P+KGVL +GPPG GKT LA+ A++ N ++ GPE+++ +GESE + E+FD A Q+
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569
Query: 503 APAVVFIDELDAIAPARKDGGEEL---SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559
AP V+F DELD+IA AR + + R++ +L MDG+ V +I ATNRPD I
Sbjct: 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629
Query: 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619
+PA+ RPGRLD+ I I +P R+ IL A L + D ++E+
Sbjct: 630 DPAILRPGRLDQLIYI--------------PLPDEKSRVAILKANLRKSPVA-KDVDLEF 674
Query: 620 LSMATHGFVGADLAALCNEA 639
L+ T+GF GADL +C A
Sbjct: 675 LAKMTNGFSGADLTEICQRA 694
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 165/232 (71%), Gaps = 1/232 (0%)
Query: 761 AMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGC 820
A+RE ++EVP+V WED+GG +VK +L E V++P +H + F + G P G+L +GPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 821 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 880
KTL+A+A+A+E NF+++KGPEL + W GESE VR +F KAR AP ++FFDE+D +
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 881 AAIR-GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRL 939
A R G DG +DRV++Q+L E+DG+ + NV +I ATNRPD IDPA+LRPGR D+L
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 940 LYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREA 991
+Y+ P+E R I + +LRK P + DV++ LA ++ G +GAD++ IC+ A
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 18/200 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P+KGVL +GPPG GKT LA+ A++ N ++ GPE+++ +GESE + E+FD A Q+
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 107
Query: 503 APAVVFIDELDAIAPARKDGGEEL---SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559
AP V+F DELD+IA AR + + R++ +L MDG+ V +I ATNRPD I
Sbjct: 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167
Query: 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619
+PA+ RPGRLD+ I I + P R+ IL A L + D ++E+
Sbjct: 168 DPAILRPGRLDQLIYIPL--------------PDEKSRVAILKANLRKSPVA-KDVDLEF 212
Query: 620 LSMATHGFVGADLAALCNEA 639
L+ T+GF GADL +C A
Sbjct: 213 LAKMTNGFSGADLTEICQRA 232
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
Length = 285
Score = 239 bits (609), Expect = 8e-63, Method: Composition-based stats.
Identities = 120/263 (45%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 762 MREVILEV---PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPP 818
MR +EV P V++ED+GG + ++ E VE P KH E F+++G PP GIL++GPP
Sbjct: 1 MRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPP 60
Query: 819 GCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEID 878
G KTL+A+AVA+E F+ V G EL K++GE V+ +F A+ APSIIF DEID
Sbjct: 61 GTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120
Query: 879 GLAAIRGKESDGVSVSD----RVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPG 934
+AA K +D ++ D R + QLL E+DG R +V +I ATNRPD +DPA+LRPG
Sbjct: 121 AIAA---KRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPG 177
Query: 935 RFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAIS 994
RFDR++ V P+E R EI +IH RK+ + DVN+ E+A ++EGC GA++ IC EA ++
Sbjct: 178 RFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMN 237
Query: 995 AIEENLDASRITMQHLKTAIRHV 1017
AI E D +TM + A+ +
Sbjct: 238 AIRELRD--YVTMDDFRKAVEKI 258
Score = 144 bits (363), Expect = 3e-34, Method: Composition-based stats.
Identities = 87/216 (40%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P KG+LL+GPPGTGKT LA+ A ++ V G E+V + GE + ++F A +
Sbjct: 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEK 109
Query: 503 APAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559
AP+++FIDE+DAIA R D GG+ QR + LL MDG V +I ATNRPD +
Sbjct: 110 APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169
Query: 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619
+PA+ RPGR DR IE+ PA P RLEIL M + D +E
Sbjct: 170 DPAILRPGRFDRIIEV------------PA--PDEKGRLEILKIHTRKMNLA-EDVNLEE 214
Query: 620 LSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSD 655
++ T G VGA+L A+C EA + +R T D
Sbjct: 215 IAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 172/268 (64%), Gaps = 16/268 (5%)
Query: 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMA 826
+ VP V W D+G +++ +L A+ P ++ + FK +G P G+L+ GPPGC KTL+A
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 827 RAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 886
+AVA+E+GLNF++VKGPEL + +VGESE+AVR +F +A+ +AP +IFFDE+D L R
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121
Query: 887 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 946
G SV RV++QLL E+DGL R V ++AATNRPD IDPA+LRPGR D+ L+VG P
Sbjct: 122 RETGASV--RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179
Query: 947 ETDREEIFRIHLR---KIPCSSDVNIRELAC-LSEGC-TGADISLICREAAISAIEENLD 1001
DR I + + K P +DVN+ +A L C TGAD+S + REA+I A+ + +
Sbjct: 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239
Query: 1002 AS---------RITMQHLKTAIRHVQPS 1020
+++ +H + A + V+ S
Sbjct: 240 RQKSGNEKGELKVSHKHFEEAFKKVRSS 267
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 124/214 (57%), Gaps = 18/214 (8%)
Query: 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPA 505
GVLL GPPG GKT LA+ A++SG+N +V GPE+++ GESE+A+ +VF A SAP
Sbjct: 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105
Query: 506 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 565
V+F DE+DA+ P R D S R+V LL MDG+ V ++AATNRPD I+PA+ R
Sbjct: 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILR 165
Query: 566 PGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA-- 623
PGRLD+ + + +P PA RL IL + LD++V ++A
Sbjct: 166 PGRLDKTLFV--------------GLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211
Query: 624 --THGFVGADLAALCNEAALVCLRRYSKIQTSSD 655
+ GADL+AL EA++ LR+ Q S +
Sbjct: 212 LRCDCYTGADLSALVREASICALRQEMARQKSGN 245
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of
Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++DVGG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 890
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 950
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 951 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 15/205 (7%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621
ALRR GR DRE++I +P RLEIL M+ + D ++E ++
Sbjct: 356 ALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400
Query: 622 MATHGFVGADLAALCNEAALVCLRR 646
THG VGADLAALC+EAAL +R+
Sbjct: 401 NETHGHVGADLAALCSEAALQAIRK 425
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 890
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 950
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 951 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 15/205 (7%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621
ALRR GR DRE++I +P RLEIL M+ + D ++E ++
Sbjct: 356 ALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400
Query: 622 MATHGFVGADLAALCNEAALVCLRR 646
THG VGADLAALC+EAAL +R+
Sbjct: 401 NETHGHVGADLAALCSEAALQAIRK 425
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 742 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQ 780
+L + + DF A + PSA+RE ++EVP+V WED+GG+
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 890
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 950
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 951 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 193 bits (490), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 15/205 (7%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621
ALRR GR DRE++I +P RLEIL M+ + D ++E ++
Sbjct: 356 ALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400
Query: 622 MATHGFVGADLAALCNEAALVCLRR 646
THG VGADLAALC+EAAL +R+
Sbjct: 401 NETHGHVGADLAALCSEAALQAIRK 425
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 742 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQ 780
+L + + DF A + PSA+RE ++EVP+V WED+GG+
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 890
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 950
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 951 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 15/205 (7%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621
ALRR GR DRE++I +P RLEIL M+ + D ++E ++
Sbjct: 356 ALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVA 400
Query: 622 MATHGFVGADLAALCNEAALVCLRR 646
THG VGADLAALC+EAAL +R+
Sbjct: 401 NETHGHVGADLAALCSEAALQAIRK 425
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 742 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQ 780
+L + + DF A + PSA+RE ++EVP+V WED+GG+
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 827
+VP ++ VGG + ++ E +E P KH E F+ +G P G++++GPPG KTL+AR
Sbjct: 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200
Query: 828 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 887
AVA F+ V G EL K++GE + VR LF AR +APSIIF DEID + + R +
Sbjct: 201 AVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260
Query: 888 SDGV-SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 946
S G S R M +LL +LDG N+ +I ATNR D +DPALLRPGR DR + PP+
Sbjct: 261 SGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS 320
Query: 947 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 998
R EI RIH RK+ + +N+R++A GC+GAD+ +C EA + A+ E
Sbjct: 321 VAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 22/225 (9%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 504
KGV+L+GPPGTGKT LAR AH + V+G E+V + GE + + E+F A + AP
Sbjct: 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP 242
Query: 505 AVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
+++F+DE+D+I R + GG+ QR + LLN +DG + + +I ATNR D ++P
Sbjct: 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEIL--HALLSGMEHSLLDSEVEY 619
AL RPGR+DR+IE P PS A R EIL H+ + + +
Sbjct: 303 ALLRPGRIDRKIEF-----------PP---PSVAARAEILRIHSRKMNLTRGI---NLRK 345
Query: 620 LSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLF 664
++ +G GAD+ +C EA + LR T D + G +
Sbjct: 346 VAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 151/248 (60%), Gaps = 4/248 (1%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++DVGG E +L E VE+ K F RIG R P GIL+ GPPG KTL+ARAVA
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVA 70
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SD 889
EA + F + G + +VG VR LFA+A+A+AP I+F DEID + RG
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 890 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 949
G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFD+ + V PP+
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 950 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 1009
R++I IH R P + DVN+ +A + G GAD+ + EAA+ A E D +ITM+
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD--KITMKD 248
Query: 1010 LKTAIRHV 1017
+ AI V
Sbjct: 249 FEEAIDRV 256
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 114/207 (55%), Gaps = 18/207 (8%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
R KG+LL GPPGTGKT LAR A ++ V F ++G + V G + ++F A
Sbjct: 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA 106
Query: 502 SAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
AP +VFIDE+DA+ R GG + ++ + LL MDG +G++V+AATNRPD
Sbjct: 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGR D++I +D P + + LEI H + D +E
Sbjct: 167 LDPALLRPGRFDKKIVVD-----------PPDMLGRKKILEI-HTRNKPLAE---DVNLE 211
Query: 619 YLSMATHGFVGADLAALCNEAALVCLR 645
++ T GFVGADL L NEAAL+ R
Sbjct: 212 IIAKRTPGFVGADLENLVNEAALLAAR 238
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 150/248 (60%), Gaps = 4/248 (1%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
+V ++DVGG E +L E VE+ K F RIG R P GIL+ GPPG TL+ARAVA
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVA 70
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SD 889
EA + F + G + +VG VR LFA+A+A+AP I+F DEID + RG
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 890 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 949
G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFD+ + V PP+
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 950 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 1009
R++I IH R P + DVN+ +A + G GAD+ + EAA+ A E D +ITM+
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD--KITMKD 248
Query: 1010 LKTAIRHV 1017
+ AI V
Sbjct: 249 FEEAIDRV 256
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 113/207 (54%), Gaps = 18/207 (8%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
R KG+LL GPPGTG T LAR A ++ V F ++G + V G + ++F A
Sbjct: 47 RMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA 106
Query: 502 SAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
AP +VFIDE+DA+ R GG + ++ + LL MDG +G++V+AATNRPD
Sbjct: 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGR D++I +D P + + LEI H + D +E
Sbjct: 167 LDPALLRPGRFDKKIVVD-----------PPDMLGRKKILEI-HTRNKPLAE---DVNLE 211
Query: 619 YLSMATHGFVGADLAALCNEAALVCLR 645
++ T GFVGADL L NEAAL+ R
Sbjct: 212 IIAKRTPGFVGADLENLVNEAALLAAR 238
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 167/304 (54%), Gaps = 13/304 (4%)
Query: 738 EKGCALKLELVDFEKARMKVR---PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWP 794
+KG + L++ R+ R P E ++ ++ +GG E +L E +E P
Sbjct: 141 KKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELP 200
Query: 795 QKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESE 854
K+ E F+R+G +PP G+L++GPPG KTL+A+AVA+ G NF+ + K++GES
Sbjct: 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260
Query: 855 KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS---DRVMSQLLVELDGLHQR 911
+ +R +FA A+ + P IIF DE+D + R S+G S R + +LL ++DG
Sbjct: 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRF--SEGTSADREIQRTLMELLTQMDGFDNL 318
Query: 912 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRE 971
+I ATNRPD +DPALLRPGR DR + + PNE R EIF+IH K+ + + +
Sbjct: 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEA 378
Query: 972 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAK 1031
+S+G GADI EA AI ++ D I L A+R V +E+ E + +
Sbjct: 379 AVKMSDGFNGADIRNCATEAGFFAIRDDRD--HINPDDLMKAVRKV--AEVKKL-EGTIE 433
Query: 1032 FQRL 1035
+Q+L
Sbjct: 434 YQKL 437
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 108/207 (52%), Gaps = 18/207 (8%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P KGVLL+GPPGTGKT LA+ A G N +V + GES + + E+F A +
Sbjct: 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKE 272
Query: 502 SAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
P ++F+DE+DAI R G + QR + LL MDG +I ATNRPD+
Sbjct: 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGRLDR++EI +P+ A RLEI + ++ + + + E
Sbjct: 333 LDPALLRPGRLDRKVEI--------------PLPNEAGRLEIFKIHTAKVKKT-GEFDFE 377
Query: 619 YLSMATHGFVGADLAALCNEAALVCLR 645
+ GF GAD+ EA +R
Sbjct: 378 AAVKMSDGFNGADIRNCATEAGFFAIR 404
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 190 bits (482), Expect = 4e-48, Method: Composition-based stats.
Identities = 102/250 (40%), Positives = 153/250 (61%), Gaps = 6/250 (2%)
Query: 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 827
E P V+++D+ G E K +++E V++ K+ E + +G + P G+L+ GPPG KTL+A+
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 828 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR--G 885
AVA EA + F ++ G +VG VR LF A+ APSIIF DEID + R G
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 886 KESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 944
G ++ ++QLL E+DG + V V+AATNRP+ +DPAL+RPGRFDR + V
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 945 PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 1004
P+ R EI ++H++ + ++DVN++E+A L+ G GAD++ I EAA+ A N
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN--QKE 240
Query: 1005 ITMQHLKTAI 1014
+ QHLK A+
Sbjct: 241 VRQQHLKEAV 250
Score = 128 bits (321), Expect = 2e-29, Method: Composition-based stats.
Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 20/210 (9%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 504
KGVLL GPPGTGKT LA+ A ++ V F++ G + G + ++F++A + AP
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAP 104
Query: 505 AVVFIDELDAIAPARKDG----GEELSQRMVATLLNLMDGVCRTDG-VLVIAATNRPDSI 559
+++FIDE+DAI +R G G + ++ + LL MDG + V+V+AATNRP+ +
Sbjct: 105 SIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164
Query: 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619
+PAL RPGR DR++ +D P R+EIL + G++ + D ++
Sbjct: 165 DPALMRPGRFDRQVLVDK--------------PDFNGRVEILKVHIKGVKLA-NDVNLQE 209
Query: 620 LSMATHGFVGADLAALCNEAALVCLRRYSK 649
++ T G GADLA + NEAAL+ R K
Sbjct: 210 VAKLTAGLAGADLANIINEAALLAGRNNQK 239
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 185 bits (469), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/230 (40%), Positives = 141/230 (61%), Gaps = 2/230 (0%)
Query: 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 830
K + DV G E K ++ E VE+ + F+++G + P G+LM GPPG KTL+A+A+A
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66
Query: 831 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SD 889
EA + F + G + +VG VR +F +A+ AP IIF DEID + RG
Sbjct: 67 GEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 126
Query: 890 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 949
G ++ ++Q+LVE+DG + VIAATNRPD +DPALLRPGRFDR + VG P+
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 950 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 999
RE+I ++H+R++P + D++ +A + G +GAD++ + EAA+ A N
Sbjct: 187 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 132 bits (333), Expect = 8e-31, Method: Composition-based stats.
Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 28/233 (12%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 504
KGVL+ GPPGTGKT LA+ A ++ V FT++G + V G + ++F+ A ++AP
Sbjct: 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP 105
Query: 505 AVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561
++FIDE+DA+ R GG + ++ + +L MDG +G++VIAATNRPD ++P
Sbjct: 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165
Query: 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621
AL RPGR DR++ + +P R +IL + + + D + ++
Sbjct: 166 ALLRPGRFDRQVVV--------------GLPDVRGREQILKVHMRRVPLA-PDIDAAIIA 210
Query: 622 MATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTML 674
T GF GADLA L NEAAL R ++ ++ EFE D ++
Sbjct: 211 RGTPGFSGADLANLVNEAALFAARGNKRVV----------SMVEFEKAKDKIM 253
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 148/276 (53%), Gaps = 7/276 (2%)
Query: 756 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMF 815
++ PS + E P V + DVGG ++ +L E VE P E F +G PP GIL++
Sbjct: 190 RIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLY 249
Query: 816 GPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD 875
GPPG KTL ARAVA+ F+ V G EL K+VGE + VR LF AR IIFFD
Sbjct: 250 GPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFD 309
Query: 876 EIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPG 934
EID + R + + G + R M +L+ +LDG R N+ V+ ATNRP+ +DPALLRPG
Sbjct: 310 EIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPG 369
Query: 935 RFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAIS 994
R DR + P+ R IFRIH + + + ++ L TGA++ +C EA +
Sbjct: 370 RIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMF 429
Query: 995 AIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSA 1030
AI + T + A+ V I YK+ S+
Sbjct: 430 AIRARRKVA--TEKDFLKAVDKV----ISGYKKFSS 459
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P KG+LL+GPPGTGKT AR A+ + V G E+V + GE + + E+F+ A
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 301
Query: 503 APAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559
++F DE+DA+ AR D GG+ QR + L+ +DG + V+ ATNRP+++
Sbjct: 302 KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361
Query: 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEI--LHALLSGMEHSLLDSEV 617
+PAL RPGR+DR++E FSL P R I +H+ +E +
Sbjct: 362 DPALLRPGRIDRKVE------FSL--------PDLEGRANIFRIHSKSMSVERGI---RW 404
Query: 618 EYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHST 660
E +S GA+L ++C EA + +R K+ T D L +
Sbjct: 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAV 447
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 145/255 (56%), Gaps = 3/255 (1%)
Query: 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 829
P + D+GG ++ E+VE P H E ++ +G +PP G++++G PG KTL+A+AV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 830 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR-GKES 888
A++ FL + G EL K++G+ + R +F A NAPSI+F DEID + R S
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 889 DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNET 948
G R M +LL +LDG R +V VI ATN+ + +DPAL+RPGR DR + P+ +
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 949 DREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 1008
+++I IH K+ S DVN+ L + +GADI +C EA + A+ E ++T +
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--RMQVTAE 414
Query: 1009 HLKTAIRHVQPSEIH 1023
K A V +++
Sbjct: 415 DFKQAKERVMKNKVE 429
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 118/217 (54%), Gaps = 18/217 (8%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+P KGV+L+G PGTGKT LA+ A+ + + G E++ + G+ + ++F A +
Sbjct: 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE 273
Query: 502 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
+AP++VFIDE+DAI R D GGE QR + LLN +DG V VI ATN+ ++
Sbjct: 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGR+DR+I L +N P + + +IL S M S D +E
Sbjct: 334 LDPALIRPGRIDRKI---------LFEN-----PDLSTKKKILGIHTSKMNLS-EDVNLE 378
Query: 619 YLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSD 655
L GAD+ A+C EA L+ LR T+ D
Sbjct: 379 TLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 5/232 (2%)
Query: 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS 831
V ++DV G E K ++ E V++ K E F ++G + P G L+ GPPGC KTL+A+AVA+
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 832 EAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV 891
EA + FLA+ G E G VRSLF +ARA AP I++ DEID + R G
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 892 SVS--DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 949
S + ++ ++QLLVE+DG+ +V V+A+TNR D +D AL+RPGR DR +++ P +
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 950 REEIFRIHLR--KIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 999
R EIF HL+ K+ SS + LA L+ G +GADI+ IC EAA+ A E
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 107/208 (51%), Gaps = 23/208 (11%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 504
KG LL GPPG GKT LA+ A ++ V + G E V G + +F A AP
Sbjct: 40 KGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAP 99
Query: 505 AVVFIDELDAIAPARKDGGEELS----QRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560
+V+IDE+DA+ R S ++ + LL MDG+ TD V+V+A+TNR D ++
Sbjct: 100 CIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY- 619
AL RPGRLDR + ID+ P+ +R EI L ++ L S Y
Sbjct: 160 GALMRPGRLDRHVFIDL--------------PTLQERREIFEQHLKSLK--LTQSSTFYS 203
Query: 620 --LSMATHGFVGADLAALCNEAALVCLR 645
L+ T GF GAD+A +CNEAAL R
Sbjct: 204 QRLAELTPGFSGADIANICNEAALHAAR 231
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 132/230 (57%), Gaps = 1/230 (0%)
Query: 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 827
E P + DVGG + +L+EA+ P K + FK +G R P G LM+GPPG KTL+AR
Sbjct: 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233
Query: 828 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR-GK 886
A A++ FL + P+L ++GE K VR FA A+ AP+IIF DE+D + R
Sbjct: 234 ACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 293
Query: 887 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 946
E G R M +LL +LDG V V+AATNR D +DPALLR GR DR + P+
Sbjct: 294 EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 947 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAI 996
E R +I +IH RK+ D+N +ELA ++ GA + + EA + A+
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 110/209 (52%), Gaps = 22/209 (10%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
R KG L++GPPGTGKT LAR CA + + P++V GE + + + F A +
Sbjct: 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE 272
Query: 502 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
AP ++FIDELDAI R D G+ QR + LLN +DG D V V+AATNR D
Sbjct: 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL R GRLDR+IE +PS R +IL M D ++
Sbjct: 333 LDPALLRSGRLDRKIEF--------------PLPSEDSRAQILQIHSRKMTT---DDDIN 375
Query: 619 Y--LSMATHGFVGADLAALCNEAALVCLR 645
+ L+ +T F GA L A+ EA ++ LR
Sbjct: 376 WQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 12/239 (5%)
Query: 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 827
E P V + DVGG K ++ EAVE P + +++IG PP G+L++GPPG KT++ +
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 828 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 887
AVA+ F+ V G E K++GE + VR +F AR NAPSIIF DE+D +A K
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KR 281
Query: 888 SDGVSVSDRVMSQLLVEL----DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 943
D + SDR + ++L+EL DG Q NV VI ATNR D +DPALLRPGR DR +
Sbjct: 282 FDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF- 340
Query: 944 PPNETDREE---IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 999
P+ DR E IF K+ + + ++ L ++ +GA I+ I +EA + A+ +N
Sbjct: 341 -PSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 17/223 (7%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P +GVLL+GPPGTGKT L + A+ + VNG E V + GE + + +VF A ++
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264
Query: 503 APAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559
AP+++FIDE+D+IA R D G + QR++ LL MDG ++ V VI ATNR D++
Sbjct: 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324
Query: 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619
+PAL RPGRLDR+IE F L++ +R I + S M + +++++
Sbjct: 325 DPALLRPGRLDRKIE------FPSLRDR-------RERRLIFGTIASKMSLA-PEADLDS 370
Query: 620 LSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGT 662
L + GA +AA+ EA L +R+ + SD+ + T
Sbjct: 371 LIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 151/245 (61%), Gaps = 11/245 (4%)
Query: 756 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILM 814
K+R + ++ E P VKWEDV G K L EAV P K FK G R PT GIL+
Sbjct: 17 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILL 74
Query: 815 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 874
+GPPG K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF
Sbjct: 75 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 134
Query: 875 DEIDGLAAIRGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLR 932
D++D L RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R
Sbjct: 135 DQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 191
Query: 933 PGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 991
RF+R +Y+ P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A
Sbjct: 192 --RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 249
Query: 992 AISAI 996
+ I
Sbjct: 250 LMQPI 254
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 20/214 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 67 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 126
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 560
+ P+++FID++DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 127 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 186
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
A+RR R +R I I +P A R + + L + L
Sbjct: 187 SAIRR--RFERRIYI--------------PLPDLAARTTMFEINVGDTPCVLTKEDYRTL 230
Query: 621 SMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 654
T G+ G+D+A + +A + +R KIQ+++
Sbjct: 231 GAMTEGYSGSDIAVVVKDALMQPIR---KIQSAT 261
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 11/238 (4%)
Query: 763 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILMFGPPGCS 821
R + E P VKWEDV G K L EAV P K FK G R PT GIL++GPPG
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTG 72
Query: 822 KTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLA 881
K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF DE+D L
Sbjct: 73 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALT 132
Query: 882 AIRGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRL 939
RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R RF+R
Sbjct: 133 GTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERR 187
Query: 940 LYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 996
+Y+ P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A + I
Sbjct: 188 IYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 245
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 20/214 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 58 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 117
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 560
+ P+++FIDE+DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 118 NKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 177
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
A+RR R +R I I + P A R + + L + L
Sbjct: 178 SAIRR--RFERRIYIPL--------------PDLAARTTMFEINVGDTPCVLTKEDYRTL 221
Query: 621 SMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 654
T G+ G+D+A + +A + +R KIQ+++
Sbjct: 222 GAMTEGYSGSDIAVVVKDALMQPIR---KIQSAT 252
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 147/236 (62%), Gaps = 11/236 (4%)
Query: 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILMFGPPGCSKT 823
++ E P VKWEDV G K L EAV P K FK G R PT GIL++GPPG K+
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKS 65
Query: 824 LMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883
+A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF D++D L
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 884 RGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 941
RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R RF+R +Y
Sbjct: 126 RGEGESEA---SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIY 180
Query: 942 VGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 996
+ P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A + I
Sbjct: 181 IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 236
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 20/214 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 108
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 560
+ P+++FID++DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
A+RR R +R I I + P A R + + L + L
Sbjct: 169 SAIRR--RFERRIYIPL--------------PDLAARTTMFEINVGDTPCVLTKEDYRTL 212
Query: 621 SMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 654
T G+ G+D+A + +A + +R KIQ+++
Sbjct: 213 GAMTEGYSGSDIAVVVKDALMQPIR---KIQSAT 243
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 508
Score = 176 bits (447), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 824
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 825 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 884
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 885 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 943
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 944 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 266
Query: 1004 RITMQHLKTA 1013
+ITM+ L+ A
Sbjct: 267 KITMKDLEEA 276
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 130
Query: 502 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGR DR+I ID P R +IL G + D ++
Sbjct: 191 LDPALLRPGRFDRQIAID--------------APDVKGREQILRIHARGKPLA-EDVDLA 235
Query: 619 YLSMATHGFVGAD 631
L+ T GFVGAD
Sbjct: 236 LLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 499
Score = 176 bits (446), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 824
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 825 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 884
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 885 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 943
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 944 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 200 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 257
Query: 1004 RITMQHLKTA 1013
+ITM+ L+ A
Sbjct: 258 KITMKDLEEA 267
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 62 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 121
Query: 502 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 181
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGR DR+I ID P R +IL G + D ++
Sbjct: 182 LDPALLRPGRFDRQIAID--------------APDVKGREQILRIHARGKPLA-EDVDLA 226
Query: 619 YLSMATHGFVGAD 631
L+ T GFVGAD
Sbjct: 227 LLAKRTPGFVGAD 239
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 176 bits (446), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 150/245 (61%), Gaps = 11/245 (4%)
Query: 756 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILM 814
K+R + ++ E P VKWEDV G K L EAV P K FK G R PT GIL+
Sbjct: 32 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILL 89
Query: 815 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 874
+GPPG K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF
Sbjct: 90 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 149
Query: 875 DEIDGLAAIRGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLR 932
D++D L RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R
Sbjct: 150 DQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 206
Query: 933 PGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 991
RF+R +Y+ P+ R +F I++ P + + R L ++EG +G+DI+++ ++A
Sbjct: 207 --RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 264
Query: 992 AISAI 996
+ I
Sbjct: 265 LMQPI 269
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 20/214 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 141
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 560
+ P+++FID++DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
A+RR R +R I I +P A R + + L + L
Sbjct: 202 SAIRR--RFERRIYI--------------PLPDLAARTTMFEINVGDTPSVLTKEDYRTL 245
Query: 621 SMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 654
T G+ G+D+A + +A + +R KIQ+++
Sbjct: 246 GAMTEGYSGSDIAVVVKDALMQPIR---KIQSAT 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 175 bits (444), Expect = 1e-43, Method: Composition-based stats.
Identities = 108/250 (43%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 824
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 64
Query: 825 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 884
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
Query: 885 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 943
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 184
Query: 944 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 185 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 242
Query: 1004 RITMQHLKTA 1013
+ITM+ L+ A
Sbjct: 243 KITMKDLEEA 252
Score = 120 bits (301), Expect = 4e-27, Method: Composition-based stats.
Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 47 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 106
Query: 502 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGR DR+I ID P R +IL G + D ++
Sbjct: 167 LDPALLRPGRFDRQIAID--------------APDVKGREQILRIHARGKPLA-EDVDLA 211
Query: 619 YLSMATHGFVGAD 631
L+ T GFVGAD
Sbjct: 212 LLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 174 bits (441), Expect = 2e-43, Method: Composition-based stats.
Identities = 108/250 (43%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 824
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 825 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 884
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 885 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 943
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 944 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 266
Query: 1004 RITMQHLKTA 1013
+ITM+ L+ A
Sbjct: 267 KITMKDLEEA 276
Score = 119 bits (299), Expect = 8e-27, Method: Composition-based stats.
Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 130
Query: 502 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190
Query: 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618
++PAL RPGR DR+I ID P R +IL G + D ++
Sbjct: 191 LDPALLRPGRFDRQIAID--------------APDVKGREQILRIHARGKPLA-EDVDLA 235
Query: 619 YLSMATHGFVGAD 631
L+ T GFVGAD
Sbjct: 236 LLAKRTPGFVGAD 248
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 151/274 (55%), Gaps = 22/274 (8%)
Query: 762 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGC 820
M E++ P V WED+ G K + E V WP + F G R PP GIL+FGPPG
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFT--GLRGPPKGILLFGPPGT 128
Query: 821 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 880
KTL+ + +AS++G F ++ L SKWVGE EK VR+LFA AR P++IF DEID L
Sbjct: 129 GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 188
Query: 881 AAIRGKESDGV-SVSDRVMSQLLVELDG--LHQRVNVTVIAATNRPDKIDPALLRPGRFD 937
+ RG DG S R+ ++ LV+LDG + V+ ATNRP +ID A R R
Sbjct: 189 LSQRG---DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLV 243
Query: 938 RLLYVGPPNETDREEI-FRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAI 996
+ LY+ P + R++I + ++ C S+ I ++ S+ +GAD++ +CREA++ I
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303
Query: 997 E--ENLDASRITMQHLK--------TAIRHVQPS 1020
+ D + IT ++ A R V+PS
Sbjct: 304 RSLQTADIATITPDQVRPIAYIDFENAFRTVRPS 337
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 18/205 (8%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P KG+LL GPPGTGKT + + A SG F+++ + S+ GE E+ + +F A
Sbjct: 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 175
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT--DGVLVIAATNRPDSIE 560
PAV+FIDE+D++ R DG E S+R+ L +DG + D +LV+ ATNRP I+
Sbjct: 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
A RR RL + + I + P + R +I+ L+S + L + E+E +
Sbjct: 236 EAARR--RLVKRLYIPL--------------PEASARKQIVINLMSKEQCCLSEEEIEQI 279
Query: 621 SMATHGFVGADLAALCNEAALVCLR 645
+ F GAD+ LC EA+L +R
Sbjct: 280 VQQSDAFSGADMTQLCREASLGPIR 304
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 762 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILMFGPPGC 820
+ E++ KV+W D+ GQ K L E V P E F G R P G+L+FGPPG
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPPGN 65
Query: 821 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 880
KTL+ARAVA+E FL + L SK+VG+ EK VR+LFA AR PSIIF DE+D L
Sbjct: 66 GKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSL 125
Query: 881 AAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFD 937
+ R S R+ ++ LVE DGL + + V+AATNRP ++D A LR RF
Sbjct: 126 LSERSSSEH--EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 938 RLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAI 996
+ +YV P+E RE + L+K D +R LA +++G +G+D++ + ++AA+ I
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 997 EE---------NLDASR-ITMQH----LKTAIRHVQPSEIHSYKELSAKF 1032
E ++ A R IT Q LK R V P ++SY++ S +
Sbjct: 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 23/233 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P KG+LL GPPG GKT LAR A + ++ + S+ G+ E+ + +F A
Sbjct: 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 112
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT---DGVLVIAATNRPDSI 559
P+++FIDE+D++ R E S+R+ L DG+ D ++V+AATNRP +
Sbjct: 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172
Query: 560 -EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSE-V 617
E ALRR K ++P R +L+ LL + S LD+E +
Sbjct: 173 DEAALRR-----------------FTKRVYVSLPDEQTRELLLNRLLQ-KQGSPLDTEAL 214
Query: 618 EYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHS 670
L+ T G+ G+DL AL +AAL +R + Q + + + E + HS
Sbjct: 215 RRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHS 267
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 137/236 (58%), Gaps = 10/236 (4%)
Query: 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP-TGILMFGPPGCSKT 823
+++E P VKW DV G K L EAV P K F G R P GIL+FGPPG K+
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKS 181
Query: 824 LMARAVASEAG-LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAA 882
+A+AVA+EA F ++ +L SKW+GESEK V++LF AR N PSIIF DEID L
Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 241
Query: 883 IRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 941
R + + R+ ++ LV++ G+ + V+ ATN P +D A+ R RF++ +Y
Sbjct: 242 SRSENES--EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 297
Query: 942 VGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 996
+ P R +FR+HL S ++ + +EL ++G +GADIS+I R+A + +
Sbjct: 298 IPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 119/214 (55%), Gaps = 21/214 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSG-VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
P +G+LL GPPGTGK+ LA+ A ++ F+++ ++VS+ GESE+ + +F A +
Sbjct: 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 225
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIE 560
+ P+++FIDE+D++ +R + E ++R+ L M GV DG+LV+ ATN P ++
Sbjct: 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
A+RR R ++ I I + P R + L ++SL +++ + L
Sbjct: 286 SAIRR--RFEKRIYIPL--------------PEAHARAAMFRLHLGSTQNSLTEADFQEL 329
Query: 621 SMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 654
T G+ GAD++ + +A + +R K+Q+++
Sbjct: 330 GRKTDGYSGADISIIVRDALMQPVR---KVQSAT 360
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 138/238 (57%), Gaps = 10/238 (4%)
Query: 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP-TGILMFGPPGCSKT 823
+++E P VKW DV G K L EAV P K F G R P GIL+FGPPG K+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKS 59
Query: 824 LMARAVASEAG-LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAA 882
+A+AVA+EA F ++ +L SKW+GESEK V++LF AR N PSIIF DEID L
Sbjct: 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119
Query: 883 IRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 941
R + + R+ ++ LV++ G+ + V+ ATN P +D A+ R RF++ +Y
Sbjct: 120 SRSENES--EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 942 VGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 998
+ P R +F++HL S ++ + REL ++G +GADIS+I R+A + + +
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 119/214 (55%), Gaps = 21/214 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSG-VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 501
P +G+LL GPPGTGK+ LA+ A ++ F+++ ++VS+ GESE+ + +F A +
Sbjct: 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 103
Query: 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIE 560
+ P+++FIDE+D++ +R + E ++R+ L M GV DG+LV+ ATN P ++
Sbjct: 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
A+RR R ++ I I + P P R + L ++SL +++ L
Sbjct: 164 SAIRR--RFEKRIYIPL--------------PEPHARAAMFKLHLGTTQNSLTEADFREL 207
Query: 621 SMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 654
T G+ GAD++ + +A + +R K+Q+++
Sbjct: 208 GRKTDGYSGADISIIVRDALMQPVR---KVQSAT 238
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 162/308 (52%), Gaps = 26/308 (8%)
Query: 744 KLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKR 803
K +L +F + M E++ VK++D+ GQ K L E V P E F
Sbjct: 84 KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF-- 141
Query: 804 IGTRPPT-GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 862
G R P G+L+FGPPG KT++A+AVA+E+ F + L SK+VGE EK VR+LFA
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 863 KARANAPSIIFFDEIDGLAAIRGK-ESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAA 919
AR PSIIF D++D L R + E D S R+ ++ L+E DG+ + V V+ A
Sbjct: 202 VARELQPSIIFIDQVDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258
Query: 920 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 978
TNRP ++D A+LR RF + +YV PNE R + + L K + + +LA +++G
Sbjct: 259 TNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDG 316
Query: 979 CTGADISLICREAAISAIEE-------NLDASRIT-------MQHLKTAIRHVQPSEIHS 1024
+G+D++ + ++AA+ I E N+ AS + + LK R V P + +
Sbjct: 317 YSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEA 376
Query: 1025 YKELSAKF 1032
Y + F
Sbjct: 377 YIRWNKDF 384
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P +G+LL GPPG GKT LA+ A +S F ++ + S+ GE E+ + +F A +
Sbjct: 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL 206
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSIE 560
P+++FID++D++ R++G + S+R+ L DGV D VLV+ ATNRP
Sbjct: 207 QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ--- 263
Query: 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620
E+D + L +K ++P+ RL +L LL L E+ L
Sbjct: 264 -------------ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQL 310
Query: 621 SMATHGFVGADLAALCNEAALVCLR 645
+ T G+ G+DL AL +AAL +R
Sbjct: 311 ARMTDGYSGSDLTALAKDAALGPIR 335
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 755 MKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILM 814
+ +RP + E I GQ +K +L +E + +E P +L+
Sbjct: 4 LALRPKTLDEYI------------GQERLKQKLRVYLEAAKARKE--------PLEHLLL 43
Query: 815 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 874
FGPPG KT +A +A E G+N GP + E + ++ A + I+F
Sbjct: 44 FGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DILFI 96
Query: 875 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV------NVTVIAATNRPDKID- 927
DEI L+ + +E ++ D VM ++ + G R T+I AT RP I
Sbjct: 97 DEIHRLSR-QAEEHLYPAMEDFVMDIVIGQ--GPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 928 PALLRPGRFDRLLYVGP 944
P L R G + L Y P
Sbjct: 154 PLLSRFGIVEHLEYYTP 170
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P + +LL GPPG GKT+LA + AH+ GVNL +GP + + G+ L +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD-- 92
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG---VCRT-----DGVLVIAATN 554
++FIDE+ ++ + E L M +++++ G RT +I AT
Sbjct: 93 ---ILFIDEIHRLS---RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 555 RPDSI-EPALRRPG 567
RP I P L R G
Sbjct: 147 RPGLITAPLLSRFG 160
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY--GESEQALHEVFDSASQS 502
K +L+ GP G GKT +AR A + V + Y E + + ++ DSA +
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 503 APAV-----VFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD--------GVCRTDGVL 548
AV VFIDE+D I + G ++S+ V LL L++ G+ +TD +L
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170
Query: 549 VIAA----TNRPDSIEPALRRPGRLDREIEI 575
IA+ RP + P L+ GRL +E+
Sbjct: 171 FIASGAFQVARPSDLIPELQ--GRLPIRVEL 199
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG-ESEKAVRSLFAKA-- 864
P ILM GP G KT +AR +A A F+ V+ + +VG E + +R L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 865 ---RANAPSIIFFDEIDGLAAIRGKESDGVSVS 894
I+F DEID + + E G VS
Sbjct: 110 AIDAVEQNGIVFIDEIDKIC--KKGEYSGADVS 140
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 755 MKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILM 814
+ +RP + E I GQ +K +L +E + +E P +L+
Sbjct: 4 LALRPKTLDEYI------------GQERLKQKLRVYLEAAKARKE--------PLEHLLL 43
Query: 815 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 874
FGPPG KT +A +A E G+N GP + E + ++ A + I+F
Sbjct: 44 FGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DILFI 96
Query: 875 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV------NVTVIAATNRPDKID- 927
DEI L+ + +E ++ D VM ++ + G R T+I AT RP I
Sbjct: 97 DEIHRLSR-QAEEHLYPAMEDFVMDIVIGQ--GPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 928 PALLRPGRFDRLLYVGP 944
P L R G + L Y P
Sbjct: 154 PLLSRFGIVEHLEYYTP 170
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P + +LL GPPG GKT+LA + AH+ GVNL +GP + + G+ L +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD-- 92
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG---VCRT-----DGVLVIAATN 554
++FIDE+ ++ + E L M +++++ G RT +I AT
Sbjct: 93 ---ILFIDEIHRLS---RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 555 RPDSI-EPALRRPG 567
RP I P L R G
Sbjct: 147 RPGLITAPLLSRFG 160
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 755 MKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILM 814
+ +RP + E I GQ +K +L +E + +E P +L+
Sbjct: 4 LALRPKTLDEYI------------GQERLKQKLRVYLEAAKARKE--------PLEHLLL 43
Query: 815 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 874
FGPPG KT +A +A E G+N GP + E + ++ A + I+F
Sbjct: 44 FGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DILFI 96
Query: 875 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV------NVTVIAATNRPDKID- 927
DEI L+ + +E ++ D VM ++ + G R T+I AT RP I
Sbjct: 97 DEIHRLSR-QAEEHLYPAMEDFVMDIVIGQ--GPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 928 PALLRPGRFDRLLYVGP 944
P L R G + L Y P
Sbjct: 154 PLLSRFGIVEHLEYYTP 170
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 502
P + +LL GPPG GKT+LA + AH+ GVNL +GP + + G+ L +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD-- 92
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG---VCRT-----DGVLVIAATN 554
++FIDE+ ++ + E L M +++++ G RT +I AT
Sbjct: 93 ---ILFIDEIHRLS---RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 555 RPDSI-EPALRRPG 567
RP I P L R G
Sbjct: 147 RPGLITAPLLSRFG 160
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 944 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 998
PPNE R +I +IH RK + +N+R++A L G +GA++ +C EA A+ E
Sbjct: 2 PPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 945 PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 998
PNE R +I +IH RK+ + +N+R++A L G +GA++ +C EA + A+ E
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE----QALHEVFDS 498
P VLL GPP +GKT+LA A +S + P+ + G SE QA+ ++FD
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 499 ASQSAPAVVFIDELDAI 515
A +S + V +D+++ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE----QALHEVFDS 498
P VLL GPP +GKT+LA A +S + P+ + G SE QA+ ++FD
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 499 ASQSAPAVVFIDELDAI 515
A +S + V +D+++ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 507 VFIDEL 512
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 816
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 817 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 876
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 877 IDGL 880
I L
Sbjct: 111 IHRL 114
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 507 VFIDEL 512
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 816
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 817 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 876
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 877 IDGL 880
I L
Sbjct: 111 IHRL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 507 VFIDELDAIAPA 518
+FIDE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 816
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 817 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 876
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 877 IDGL 880
I L
Sbjct: 111 IHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 507 VFIDELDAIAPA 518
+FIDE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 816
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 817 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 876
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 877 IDGL 880
I L
Sbjct: 111 IHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 507 VFIDELDAIAPA 518
+FIDE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 816
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 817 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 876
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 877 IDGL 880
I L
Sbjct: 111 IHRL 114
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSA--- 499
+ VLL GPPGTGKT+LA A + G V G EV S ++E L E F A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE-VLXENFRRAIGL 136
Query: 500 --SQSAPAV---VFIDELDAIAPARKDGGEEL 526
+ P + V + +LD +A AR GG+++
Sbjct: 137 RIKEGPPGIIQDVTLHDLD-VANARPQGGQDI 167
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 812 ILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESEKAV----RSLFAKAR 865
+L+ GPPG KT +A A+A E G + F G E++S + ++E R++ + +
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLRIK 139
Query: 866 ANAPSII 872
P II
Sbjct: 140 EGPPGII 146
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
VLL GPPG G+T+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 507 VFIDELDAIAPA 518
+FIDE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 816
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 817 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 876
PPG +T +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 877 IDGL 880
I L
Sbjct: 111 IHRL 114
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSAS---- 500
+ +L+GPPG GKT+ A L A + G ++ N +V S+ + + D+ S
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNA--GVKNALDNMSVVGY 135
Query: 501 ----------QSAPAVVFIDELDAIAPARKDGGEELSQ 528
V+ +DE+D ++ + G +L+Q
Sbjct: 136 FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQ 173
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 793 WPQKHQEAFKRIGTRPPTGI----LMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848
W + +FK G + +G+ +++GPPG KT A VA E G + L ++ SK
Sbjct: 58 WENSKKNSFKHAG-KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
Query: 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK-------ESDGVSVSDR 896
+ + + A N + +F + + GK E DG+S DR
Sbjct: 117 TL------LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR 165
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Query: 447 VLLHGP-PGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-------NYGESEQALHEVFDS 498
++LH P PGTGKT++A+ HD ++ VNG + N+ + FD
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAAS-----FDG 104
Query: 499 ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558
+ V+ IDE D G SQR + + + C ++I A N
Sbjct: 105 RQK----VIVIDEFDR-------SGLAESQRHLRSFMEAYSSNCS----IIITANNIDGI 149
Query: 559 IEPALRR 565
I+P R
Sbjct: 150 IKPLQSR 156
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 37.4 bits (85), Expect = 0.042, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
+L GP G GKT+LA + +++ N+ T P + E L + + S+ +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI------EKSGDLAAILTNLSEG--DI 109
Query: 507 VFIDELDAIAPA 518
+FIDE+ ++PA
Sbjct: 110 LFIDEIHRLSPA 121
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 506
++L GPPGTGKT+LA + A + ++ ++ V+ E +A+ + + +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKEIREAIERARQNRNAGRRTI 109
Query: 507 VFIDEL--------DAIAPARKDG 522
+F+DE+ DA P +DG
Sbjct: 110 LFVDEVHRFNKSQQDAFLPHIEDG 133
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 812 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN---- 867
++++GPPG KT +A +A A + + V K +R +AR N
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 868 APSIIFFDEI 877
+I+F DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 36.2 bits (82), Expect = 0.092, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEV 495
PT + G PGTGKT++A A H G +L +V ++V Q G + EV
Sbjct: 59 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 118
Query: 496 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA 552
A V+FIDE A R D + Q + LL +M+ R D V+++A
Sbjct: 119 LKRA---MGGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVMEN-NRDDLVVILAG 169
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEV 495
PT + G PGTGKT++A A H G +L +V ++V Q G + EV
Sbjct: 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 125
Query: 496 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA 552
A V+FIDE A R D + Q + LL +M+ R D V+++A
Sbjct: 126 LKRA---MGGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVMEN-NRDDLVVILAG 176
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 810 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGESEKAVRSLFAKA---- 864
+ IL+ GP G KTLMA+ +A + L + +VGE + + + +A
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWN 132
Query: 865 -RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 905
+ I+F DEID ++ + S VS + Q L+++
Sbjct: 133 VQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 174
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GES-EQALHEVFDSA----S 500
+LL GP G+GKT +A+ A + + + + Y GE E L + ++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 501 QSAPAVVFIDELDAIA 516
++ +VFIDE+D I+
Sbjct: 135 KAQKGIVFIDEIDKIS 150
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 812 ILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESE 854
+L+ GPPG KT +A A+A E G + F + G E++S + ++E
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSA 499
+ VLL GPPGTGKT+LA A + G V + G EV S ++E L E F A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 119
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA---- 864
P + ++G G K+ V + G+N + + EL S GE K +R + +A
Sbjct: 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEII 95
Query: 865 RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL--------VELDGLHQR---VN 913
R +F +++D A G + + V + L+ V+L G++ +
Sbjct: 96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR 155
Query: 914 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 950
V +I N + L+R GR ++ + P DR
Sbjct: 156 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 190
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 451 GPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAV 506
G G GK+ L G+N ++ E+ S N GE + + + + A++
Sbjct: 43 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCC 102
Query: 507 VFIDELDAIAPARKDGGEELS---QRMVATLLNLMD 539
+FI++LDA A R G + + Q + ATL+N+ D
Sbjct: 103 LFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIAD 137
>pdb|2FOZ|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|B Chain B, Human Adp-Ribosylhydrolase 3
Length = 347
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 139 ALATVFPSCKVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQ---------SQFLTGLVNG 189
++ + S + ++ RLS+ L++ +G + + FL L+ G
Sbjct: 143 GISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLKQLL-G 201
Query: 190 SNKPYNGEANHFSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSP 249
+ G+A SV +EL +E P SRLK G + V+ E +LGNGI +
Sbjct: 202 HMEDLEGDAQ--SVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFE 259
Query: 250 KTP 252
P
Sbjct: 260 SVP 262
>pdb|2G4K|A Chain A, Anomalous Substructure Of Human Adp-Ribosylhydrolase 3
Length = 347
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 139 ALATVFPSCKVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQ---------SQFLTGLVNG 189
++ + S + ++ RLS+ L++ +G + + FL L+ G
Sbjct: 143 GISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLKQLL-G 201
Query: 190 SNKPYNGEANHFSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSP 249
+ G+A SV +EL +E P SRLK G + V+ E +LGNGI +
Sbjct: 202 HMEDLEGDAQ--SVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFE 259
Query: 250 KTP 252
P
Sbjct: 260 SVP 262
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 943 GPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 998
G P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A + I +
Sbjct: 1 GSPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|2QTY|A Chain A, Crystal Structure Of Mouse Adp-ribosylhydrolase 3 (marh3)
pdb|2QTY|B Chain B, Crystal Structure Of Mouse Adp-ribosylhydrolase 3 (marh3)
Length = 347
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 139 ALATVFPSCKVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQ---------SQFLTGLVNG 189
++ + S + ++ RLS+ L++ +G + + FL L+ G
Sbjct: 143 GISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGVSSSEHFLEQLL-G 201
Query: 190 SNKPYNGEANHFSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSP 249
+ G+A SV +EL +E P SRLK G + VS E +LGNGI +
Sbjct: 202 HMEELEGDAQ--SVLDAKELGMEERPYSSRLKKVGELLDQDVVSREEVVSELGNGIAAFE 259
Query: 250 KTP 252
P
Sbjct: 260 SVP 262
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA 868
P ILM GP G KT +AR +A A F+ V+ + VG K V S+ +A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSA 107
Query: 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 902
++ EI A R + D +R++ LL
Sbjct: 108 MKLVRQQEI---AKNRARAED--VAEERILDALL 136
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 539
E+ + D+ Q+ +VFIDE+D I + G ++S+ V LL L++
Sbjct: 238 EELKQKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 295
Query: 540 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 575
G+ +TD +L IA+ RP + P L+ GRL +E+
Sbjct: 296 GMVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVEL 333
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY--GESEQALHEVFDSA 499
K +L+ GP G GKT +AR A + V + Y E + + ++ DSA
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQAL----HEVFDSASQS 502
+L GPPGTGKT+ A A D LF N + + E+ + H++ + A ++
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFA-RT 95
Query: 503 AP------AVVFIDELDAI 515
AP ++F+DE DA+
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 861
P ILM GP G KT +AR +A A F+ V+ + VG K V S+
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSII 99
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 539
E+ + D+ Q +VFIDE+D I + G ++S+ V LL L++
Sbjct: 236 EELKQDAIDAVEQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKH 293
Query: 540 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 575
G+ +TD +L IA+ +P + P L+ GRL +E+
Sbjct: 294 GMVKTDHILFIASGAFQIAKPSDLIPELQ--GRLPIRVEL 331
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY--GESEQALHEVFDSASQS 502
K +L+ GP G GKT +AR A + V + Y E + + ++ D+A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA--- 106
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLL-NLMDGVCRTDGVLVIAATNRPDSIEP 561
V + + AI R E +R++ L+ + +T+ P +
Sbjct: 107 ----VKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTE------QQQEPSAARQ 156
Query: 562 ALR---RPGRL-DREIEIDMS 578
A R R G+L D+EIEID++
Sbjct: 157 AFRKKLREGQLDDKEIEIDLA 177
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 861
P ILM GP G KT +AR +A A F+ V+ + VG K V S+
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSII 106
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 539
E+ + D+ Q +VFIDE+D I + G ++S+ V LL L++
Sbjct: 243 EELKQDAIDAVEQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKH 300
Query: 540 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 575
G+ +TD +L IA+ +P + P L+ GRL +E+
Sbjct: 301 GMVKTDHILFIASGAFQIAKPSDLIPELQ--GRLPIRVEL 338
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY--GESEQALHEVFDSASQS 502
K +L+ GP G GKT +AR A + V + Y E + + ++ D+A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA--- 113
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLL-NLMDGVCRTDGVLVIAATNRPDSIEP 561
V + + AI R E +R++ L+ + +T+ P +
Sbjct: 114 ----VKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTE------QQQEPSAARQ 163
Query: 562 ALR---RPGRL-DREIEIDMS 578
A R R G+L D+EIEID++
Sbjct: 164 AFRKKLREGQLDDKEIEIDLA 184
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 861
P ILM GP G KT +AR +A A F+ V+ + VG K V S+
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSII 100
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 539
E+ + D+ Q +VFIDE+D I + G ++S+ V LL L++
Sbjct: 237 EELKQDAIDAVEQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKH 294
Query: 540 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 575
G+ +TD +L IA+ +P + P L+ GRL +E+
Sbjct: 295 GMVKTDHILFIASGAFQIAKPSDLIPELQ--GRLPIRVEL 332
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY--GESEQALHEVFDSASQS 502
K +L+ GP G GKT +AR A + V + Y E + + ++ D+A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA--- 107
Query: 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLL-NLMDGVCRTDGVLVIAATNRPDSIEP 561
V + + AI R E +R++ L+ + +T+ P +
Sbjct: 108 ----VKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTE------QQQEPSAARQ 157
Query: 562 ALR---RPGRL-DREIEIDMS 578
A R R G+L D+EIEID++
Sbjct: 158 AFRKKLREGQLDDKEIEIDLA 178
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQAL----HEVFDSASQS 502
+L GPPGTGKT+ A A D LF N + + E+ + H++ + A ++
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFA-RT 95
Query: 503 AP------AVVFIDELDAI 515
AP ++F+DE DA+
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 812 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGES-EKAVRSLFAKARANAP 869
IL+ GP G KTL+A +A + F L + +VGE E ++ L K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 870 ----SIIFFDEIDGLAAIRGKESDGVSVSDRV 897
I++ D+ID ++ ++SD S++ V
Sbjct: 114 KAQRGIVYIDQIDKIS----RKSDNPSITRDV 141
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GESE----QALHEVFDSASQ 501
+LL GP G+GKT LA A V + + Y GE Q L + D Q
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 502 SAP-AVVFIDELDAIA-----PA--RKDGGEELSQRMVATLLNLMDGVC 542
A +V+ID++D I+ P+ R GE + Q LL L++G
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQ----ALLKLIEGTV 158
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 812 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGES-EKAVRSLFAKARANAP 869
IL+ GP G KTL+A +A + F L + +VGE E ++ L K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 870 ----SIIFFDEIDGLAAIRGKESDGVSVSDRV 897
I++ D+ID ++ ++SD S++ V
Sbjct: 114 KAQRGIVYIDQIDKIS----RKSDNPSITRDV 141
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GESE----QALHEVFDSASQ 501
+LL GP G+GKT LA A V + + Y GE Q L + D Q
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 502 SAP-AVVFIDELDAIA-----PA--RKDGGEELSQRMVATLLNLMDGVC 542
A +V+ID++D I+ P+ R GE + Q LL L++G
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQ----ALLKLIEGTV 158
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 443 PTKGVLLHGPPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEV 495
PT G PGTGKT++A A H G +L +V ++V Q G + EV
Sbjct: 66 PTLHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 125
Query: 496 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA 552
A V+FIDE A R D + Q + LL + + R D V+++A
Sbjct: 126 LKRAXG---GVLFIDE--AYYLYRPDNERDYGQEAIEILLQVXEN-NRDDLVVILAG 176
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone Hsm3
In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone Hsm3
In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 945 PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 1004
P+ R IFRIH + + + ++ L TGA++ +C EA + AI +
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA- 66
Query: 1005 ITMQHLKTAIRHVQPSEIHSYKELSA 1030
T + A+ V I YK+ S+
Sbjct: 67 -TEKDFLKAVDKV----ISGYKKFSS 87
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 953 IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 999
IF K+ S +V++ + + +GADI+ IC+E+ + A+ EN
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55
>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
Length = 389
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 837
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETXEAAKEHSLTV 115
Query: 838 LAVKGPELFSKWVG 851
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 539
E+ + D+ Q+ +VFIDE+D I + G ++S+ V LL L++
Sbjct: 238 EELKQKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 295
Query: 540 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 575
G +TD +L IA+ RP + P L+ GRL +E+
Sbjct: 296 GXVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVEL 333
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 837
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 838 LAVKGPELFSKWVG 851
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 837
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 838 LAVKGPELFSKWVG 851
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 837
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 838 LAVKGPELFSKWVG 851
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 837
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 838 LAVKGPELFSKWVG 851
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 837
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 59 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 116
Query: 838 LAVKGPELFSKWVG 851
++G E+ +W G
Sbjct: 117 DLLEGDEINKRWPG 130
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNL-FT-VNGPEVVSQNYGESEQALHEVF 496
+ VL+ G PGTGKT++A A G + FT + G E+ S ++E AL + F
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAF 123
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 812 ILMFGPPGCSKTLMARAVASEAGLNFLAV 840
IL+ G PG KT + + +AS++GL ++ V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 812 ILMFGPPGCSKTLMARAVASEAGLNFLAV 840
IL+ G PG KT + + +AS++GL ++ V
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 814 MFGPPGCSKTLMARAVA-SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSII 872
+F GC++ + RA A +AG +F V +K+VG++ K++R L A ++
Sbjct: 91 VFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVA 150
Query: 873 FFDEIDGLAA 882
+ D LA+
Sbjct: 151 TYAGADYLAS 160
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 445 KGVLLHGPPGTGKTSLARLCAHDSGVNL-FT-VNGPEVVSQNYGESEQALHEVFDSA--- 499
+ VL+ G PGTGKT++A A G + FT + G E+ S ++E AL + F +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTE-ALTQAFRRSIGV 144
Query: 500 --SQSAPAVVF---IDELDAI 515
+ P VV + E+D I
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVI 165
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 817 PPGCSKTLMARAVASEA-GLNFLAVKGPELF 846
PPG ++ L+ARAVA EA G+ F PE
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 442 RPTKGVLLHGPPGTGKTSLARLCAHD----------SGVNLFTVN-GPEVVSQNY-GESE 489
R +L G PG GKT++ A G + ++ G V Y GE E
Sbjct: 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100
Query: 490 QALHEVF-DSASQSAPAVVFIDELDAIAPARKDGG 523
+ L V D A Q ++FIDEL + A K G
Sbjct: 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,271,714
Number of Sequences: 62578
Number of extensions: 1083329
Number of successful extensions: 2966
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2682
Number of HSP's gapped (non-prelim): 190
length of query: 1086
length of database: 14,973,337
effective HSP length: 109
effective length of query: 977
effective length of database: 8,152,335
effective search space: 7964831295
effective search space used: 7964831295
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)