Query 001395
Match_columns 1086
No_of_seqs 802 out of 5671
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 23:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 6E-111 1E-115 954.5 47.7 683 246-1037 85-789 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-95 4E-100 842.7 45.5 501 411-1029 184-690 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-79 3.4E-84 766.2 59.8 601 305-1033 109-730 (733)
4 KOG0736 Peroxisome assembly fa 100.0 5.2E-77 1.1E-81 692.3 50.3 603 301-1033 303-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 7.9E-66 1.7E-70 593.4 40.8 453 442-1000 429-890 (952)
6 COG0464 SpoVK ATPases of the A 100.0 1.8E-61 4E-66 580.3 44.8 485 432-1028 6-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.9E-54 4.1E-59 472.3 22.9 252 766-1019 142-394 (406)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-49 2.8E-54 434.5 26.6 263 368-647 110-376 (406)
9 KOG0741 AAA+-type ATPase [Post 100.0 3.6E-46 7.7E-51 419.5 34.7 539 302-955 117-683 (744)
10 KOG0738 AAA+-type ATPase [Post 100.0 2.4E-45 5.2E-50 402.2 22.4 266 763-1032 200-488 (491)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 3.2E-45 7E-50 418.1 22.0 289 769-1060 184-551 (802)
12 KOG0734 AAA+-type ATPase conta 100.0 9.4E-45 2E-49 408.4 19.5 244 769-1017 298-541 (752)
13 KOG0730 AAA+-type ATPase [Post 100.0 3.8E-44 8.3E-49 416.3 22.8 228 404-646 427-655 (693)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 3.8E-41 8.3E-46 397.8 42.3 384 503-1020 81-466 (489)
15 KOG0728 26S proteasome regulat 100.0 3.5E-43 7.5E-48 365.1 19.8 252 766-1019 138-390 (404)
16 KOG0727 26S proteasome regulat 100.0 3.9E-43 8.4E-48 365.1 20.0 249 768-1018 148-397 (408)
17 KOG0729 26S proteasome regulat 100.0 4.4E-43 9.4E-48 367.0 15.2 258 758-1017 160-418 (435)
18 KOG0731 AAA+-type ATPase conta 100.0 1.4E-41 3E-46 406.5 22.5 248 770-1020 306-556 (774)
19 KOG0726 26S proteasome regulat 100.0 3.1E-42 6.7E-47 364.7 13.3 248 768-1017 178-426 (440)
20 KOG0652 26S proteasome regulat 100.0 1.3E-41 2.8E-46 355.1 17.2 251 767-1019 163-414 (424)
21 KOG0739 AAA+-type ATPase [Post 100.0 2.8E-41 6E-46 358.6 14.2 266 762-1032 120-435 (439)
22 KOG0736 Peroxisome assembly fa 100.0 8.5E-40 1.9E-44 382.0 22.5 232 403-649 664-901 (953)
23 KOG0727 26S proteasome regulat 100.0 6.7E-40 1.4E-44 341.0 18.7 265 368-649 114-382 (408)
24 PTZ00454 26S protease regulato 100.0 3.3E-39 7E-44 374.2 25.1 251 767-1019 137-388 (398)
25 COG1223 Predicted ATPase (AAA+ 100.0 1.4E-39 2.9E-44 340.7 17.8 243 768-1019 114-357 (368)
26 KOG0728 26S proteasome regulat 100.0 5.4E-39 1.2E-43 333.9 21.4 262 368-646 106-371 (404)
27 KOG0734 AAA+-type ATPase conta 100.0 1.8E-39 3.9E-44 365.9 18.5 238 407-659 300-537 (752)
28 COG0465 HflB ATP-dependent Zn 100.0 2.4E-39 5.3E-44 382.3 20.1 247 769-1018 144-391 (596)
29 KOG0738 AAA+-type ATPase [Post 100.0 5.4E-39 1.2E-43 352.3 20.5 230 403-649 204-438 (491)
30 PRK03992 proteasome-activating 100.0 5.7E-38 1.2E-42 365.1 24.9 254 765-1020 121-375 (389)
31 KOG0732 AAA+-type ATPase conta 100.0 1.1E-37 2.3E-42 381.2 23.9 382 408-882 262-667 (1080)
32 KOG0726 26S proteasome regulat 100.0 2.3E-38 5E-43 335.4 15.4 225 407-646 181-409 (440)
33 KOG0737 AAA+-type ATPase [Post 100.0 8.4E-38 1.8E-42 344.3 19.9 230 770-1003 87-319 (386)
34 PTZ00361 26 proteosome regulat 100.0 2.2E-37 4.9E-42 360.9 22.1 250 767-1018 175-425 (438)
35 KOG0652 26S proteasome regulat 100.0 9.9E-38 2.1E-42 326.0 15.7 235 406-655 166-404 (424)
36 KOG0735 AAA+-type ATPase [Post 100.0 4.3E-37 9.4E-42 356.1 20.8 228 408-650 664-892 (952)
37 KOG0729 26S proteasome regulat 100.0 1.7E-37 3.6E-42 325.1 14.6 238 407-659 173-414 (435)
38 KOG0739 AAA+-type ATPase [Post 100.0 6.5E-37 1.4E-41 325.4 15.4 229 405-649 127-356 (439)
39 TIGR01241 FtsH_fam ATP-depende 100.0 1.1E-35 2.4E-40 356.8 25.6 248 768-1018 48-296 (495)
40 KOG0731 AAA+-type ATPase conta 100.0 6.5E-36 1.4E-40 358.0 21.4 231 407-651 307-541 (774)
41 TIGR02639 ClpA ATP-dependent C 100.0 1.2E-33 2.5E-38 353.0 37.7 442 408-999 179-715 (731)
42 COG1223 Predicted ATPase (AAA+ 100.0 6.9E-35 1.5E-39 305.4 21.7 292 300-650 49-342 (368)
43 TIGR01242 26Sp45 26S proteasom 100.0 1E-34 2.2E-39 336.0 23.4 249 767-1017 114-363 (364)
44 KOG0741 AAA+-type ATPase [Post 100.0 1.1E-35 2.3E-40 335.2 14.4 252 769-1020 213-493 (744)
45 PTZ00454 26S protease regulato 100.0 1.7E-34 3.8E-39 334.8 24.7 265 368-649 104-372 (398)
46 KOG0651 26S proteasome regulat 100.0 5.6E-36 1.2E-40 321.0 11.1 246 769-1018 126-374 (388)
47 TIGR03689 pup_AAA proteasome A 100.0 3.3E-34 7.1E-39 338.3 24.5 249 767-1016 174-477 (512)
48 CHL00176 ftsH cell division pr 100.0 5.7E-34 1.2E-38 346.4 24.5 245 770-1017 178-423 (638)
49 PRK11034 clpA ATP-dependent Cl 100.0 1.6E-32 3.4E-37 338.9 37.1 447 409-998 184-718 (758)
50 COG0464 SpoVK ATPases of the A 100.0 1.6E-33 3.5E-38 338.6 26.0 226 407-646 238-465 (494)
51 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.7E-34 1.9E-38 358.0 22.8 234 798-1041 1619-1912(2281)
52 KOG0740 AAA+-type ATPase [Post 100.0 5.7E-34 1.2E-38 325.0 18.9 268 761-1033 139-424 (428)
53 PRK03992 proteasome-activating 100.0 3.8E-33 8.3E-38 324.7 26.2 225 407-646 127-355 (389)
54 PTZ00361 26 proteosome regulat 100.0 6.9E-33 1.5E-37 323.3 26.9 231 406-651 178-412 (438)
55 TIGR01243 CDC48 AAA family ATP 100.0 3.9E-33 8.5E-38 349.2 26.5 227 407-648 449-677 (733)
56 COG0465 HflB ATP-dependent Zn 100.0 1.2E-33 2.6E-38 334.2 19.1 234 407-655 146-382 (596)
57 KOG0732 AAA+-type ATPase conta 100.0 2E-33 4.3E-38 343.9 18.4 249 770-1020 260-528 (1080)
58 PRK10733 hflB ATP-dependent me 100.0 3.7E-32 8E-37 334.0 26.0 246 771-1019 148-394 (644)
59 KOG0737 AAA+-type ATPase [Post 100.0 7.7E-33 1.7E-37 305.2 17.4 228 406-650 87-318 (386)
60 CHL00195 ycf46 Ycf46; Provisio 100.0 3.9E-32 8.4E-37 321.4 24.5 220 408-645 225-446 (489)
61 TIGR01241 FtsH_fam ATP-depende 100.0 4.1E-31 9E-36 317.4 21.6 225 408-647 52-279 (495)
62 KOG0651 26S proteasome regulat 100.0 4.4E-32 9.6E-37 291.1 11.6 225 407-646 128-356 (388)
63 TIGR03345 VI_ClpV1 type VI sec 100.0 3.3E-29 7.2E-34 315.1 37.4 511 408-998 184-833 (852)
64 CHL00095 clpC Clp protease ATP 100.0 7.3E-29 1.6E-33 313.3 39.3 498 408-997 176-783 (821)
65 TIGR01242 26Sp45 26S proteasom 100.0 2.9E-30 6.4E-35 298.8 23.9 229 406-649 117-349 (364)
66 TIGR03689 pup_AAA proteasome A 100.0 7.5E-30 1.6E-34 301.4 27.0 188 406-607 177-380 (512)
67 PLN00020 ribulose bisphosphate 100.0 2.3E-30 5.1E-35 288.4 19.9 219 772-997 112-353 (413)
68 PLN00020 ribulose bisphosphate 100.0 5.2E-30 1.1E-34 285.7 21.4 220 408-646 112-354 (413)
69 CHL00176 ftsH cell division pr 100.0 5.1E-30 1.1E-34 312.0 21.4 227 408-649 180-409 (638)
70 PRK10865 protein disaggregatio 100.0 2.2E-28 4.7E-33 308.6 36.7 525 408-998 175-831 (857)
71 TIGR03346 chaperone_ClpB ATP-d 100.0 8.1E-28 1.8E-32 304.6 39.2 511 408-999 170-829 (852)
72 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.3E-30 1.6E-34 322.9 18.2 201 434-654 1620-1868(2281)
73 COG0542 clpA ATP-binding subun 100.0 1.2E-27 2.6E-32 289.6 33.1 488 408-996 167-755 (786)
74 KOG0740 AAA+-type ATPase [Post 100.0 2.5E-29 5.5E-34 287.0 14.9 223 408-647 150-375 (428)
75 PRK10733 hflB ATP-dependent me 100.0 1.3E-28 2.8E-33 302.8 21.3 227 408-649 149-378 (644)
76 CHL00181 cbbX CbbX; Provisiona 99.9 5.9E-21 1.3E-25 213.7 20.6 225 774-1010 22-271 (287)
77 TIGR02881 spore_V_K stage V sp 99.9 1.3E-20 2.8E-25 208.8 21.5 218 408-649 3-244 (261)
78 CHL00181 cbbX CbbX; Provisiona 99.9 1.2E-20 2.6E-25 211.2 20.7 216 411-649 23-260 (287)
79 TIGR02881 spore_V_K stage V sp 99.9 1.9E-20 4.2E-25 207.4 20.6 224 774-1010 5-253 (261)
80 COG2256 MGS1 ATPase related to 99.9 2.2E-20 4.8E-25 208.8 20.0 243 771-1058 20-282 (436)
81 TIGR02880 cbbX_cfxQ probable R 99.8 2.8E-20 6.1E-25 208.2 19.8 214 775-1000 22-258 (284)
82 TIGR02880 cbbX_cfxQ probable R 99.8 4.5E-20 9.7E-25 206.6 20.2 218 409-649 19-259 (284)
83 KOG0744 AAA+-type ATPase [Post 99.8 2.5E-20 5.3E-25 201.8 12.5 238 773-1016 140-413 (423)
84 KOG0743 AAA+-type ATPase [Post 99.8 7.3E-20 1.6E-24 208.0 16.9 209 767-986 194-411 (457)
85 KOG0742 AAA+-type ATPase [Post 99.8 1.4E-19 3.1E-24 200.1 17.9 209 771-990 351-587 (630)
86 PF00004 AAA: ATPase family as 99.8 4.4E-20 9.5E-25 181.4 12.2 130 812-944 1-132 (132)
87 PF00004 AAA: ATPase family as 99.8 8.3E-20 1.8E-24 179.4 12.5 128 447-575 1-130 (132)
88 PF05496 RuvB_N: Holliday junc 99.8 2.4E-18 5.3E-23 182.0 15.3 189 770-990 19-224 (233)
89 PF05496 RuvB_N: Holliday junc 99.8 6.8E-18 1.5E-22 178.7 17.7 188 407-637 20-223 (233)
90 TIGR02639 ClpA ATP-dependent C 99.8 6.3E-18 1.4E-22 212.0 16.1 244 772-1039 179-459 (731)
91 COG3829 RocR Transcriptional r 99.7 2.6E-18 5.7E-23 199.1 10.5 266 769-1068 239-559 (560)
92 KOG2004 Mitochondrial ATP-depe 99.7 1.9E-17 4.2E-22 194.3 16.3 203 371-607 374-598 (906)
93 COG2204 AtoC Response regulato 99.7 7.9E-18 1.7E-22 195.8 12.9 271 772-1074 138-462 (464)
94 KOG0744 AAA+-type ATPase [Post 99.7 5.4E-18 1.2E-22 183.8 9.3 176 417-608 148-343 (423)
95 KOG1051 Chaperone HSP104 and r 99.7 1.1E-15 2.3E-20 188.5 30.2 446 411-922 186-710 (898)
96 KOG0743 AAA+-type ATPase [Post 99.7 4.1E-17 8.8E-22 185.8 16.4 200 410-634 200-411 (457)
97 KOG2028 ATPase related to the 99.7 8.9E-17 1.9E-21 176.3 18.2 250 772-1061 135-415 (554)
98 PRK14956 DNA polymerase III su 99.7 1E-16 2.3E-21 187.7 19.6 202 770-1014 13-243 (484)
99 COG2255 RuvB Holliday junction 99.7 1.7E-16 3.6E-21 170.6 18.7 215 770-1018 21-252 (332)
100 KOG0742 AAA+-type ATPase [Post 99.7 8.1E-17 1.7E-21 178.6 16.6 207 410-639 354-588 (630)
101 PRK00080 ruvB Holliday junctio 99.7 7.5E-16 1.6E-20 176.4 23.9 216 771-1020 21-253 (328)
102 TIGR00635 ruvB Holliday juncti 99.7 4.4E-16 9.5E-21 176.2 21.4 211 773-1017 2-229 (305)
103 TIGR00763 lon ATP-dependent pr 99.7 2.3E-16 5E-21 199.0 19.8 205 411-646 320-557 (775)
104 TIGR00763 lon ATP-dependent pr 99.7 2.5E-16 5.5E-21 198.6 20.1 221 775-1015 320-584 (775)
105 PRK14962 DNA polymerase III su 99.7 8.4E-16 1.8E-20 182.6 21.9 206 769-1017 8-242 (472)
106 PRK11034 clpA ATP-dependent Cl 99.7 1.7E-16 3.8E-21 197.1 16.5 244 772-1039 183-463 (758)
107 KOG2004 Mitochondrial ATP-depe 99.7 1.4E-16 3.1E-21 187.1 14.1 283 775-1077 411-744 (906)
108 COG0466 Lon ATP-dependent Lon 99.7 3.5E-16 7.6E-21 185.3 17.0 236 374-643 289-561 (782)
109 PRK13342 recombination factor 99.7 1.4E-15 2.9E-20 179.4 22.0 236 771-1054 8-259 (413)
110 PRK07003 DNA polymerase III su 99.7 1.2E-15 2.6E-20 184.5 20.4 187 770-993 11-226 (830)
111 COG2255 RuvB Holliday junction 99.7 1.1E-15 2.3E-20 164.5 17.8 189 407-638 22-226 (332)
112 COG3604 FhlA Transcriptional r 99.7 1.6E-16 3.4E-21 182.0 10.5 274 771-1072 219-549 (550)
113 PRK12323 DNA polymerase III su 99.7 1.1E-15 2.4E-20 182.8 18.0 187 770-993 11-231 (700)
114 PRK00080 ruvB Holliday junctio 99.7 2.5E-15 5.5E-20 172.0 20.0 194 408-644 22-231 (328)
115 TIGR00635 ruvB Holliday juncti 99.7 2.5E-15 5.4E-20 170.1 19.7 192 409-643 2-209 (305)
116 PRK14960 DNA polymerase III su 99.6 7.1E-15 1.5E-19 176.4 22.6 203 770-1015 10-241 (702)
117 PRK14949 DNA polymerase III su 99.6 4.8E-15 1E-19 182.4 20.5 186 770-992 11-225 (944)
118 PRK13341 recombination factor 99.6 4.2E-15 9E-20 184.1 19.4 243 771-1054 24-287 (725)
119 PRK07994 DNA polymerase III su 99.6 1.6E-14 3.4E-19 175.9 22.5 186 770-992 11-225 (647)
120 TIGR03345 VI_ClpV1 type VI sec 99.6 8.4E-15 1.8E-19 185.4 20.8 200 771-995 183-410 (852)
121 TIGR02902 spore_lonB ATP-depen 99.6 8.1E-15 1.8E-19 177.4 19.5 212 769-1016 59-331 (531)
122 CHL00095 clpC Clp protease ATP 99.6 3.7E-15 7.9E-20 189.3 17.2 185 771-980 175-381 (821)
123 PRK14961 DNA polymerase III su 99.6 2.2E-14 4.9E-19 166.3 22.0 203 770-1015 11-242 (363)
124 PRK14958 DNA polymerase III su 99.6 1.4E-14 3.1E-19 173.8 20.5 204 770-1016 11-243 (509)
125 COG0466 Lon ATP-dependent Lon 99.6 1.5E-14 3.2E-19 171.7 19.6 222 775-1016 323-583 (782)
126 PRK14964 DNA polymerase III su 99.6 2.3E-14 5E-19 169.9 21.4 203 770-1015 8-239 (491)
127 PRK10787 DNA-binding ATP-depen 99.6 6E-14 1.3E-18 175.9 25.5 239 373-646 287-558 (784)
128 PRK06645 DNA polymerase III su 99.6 4.4E-14 9.5E-19 168.7 23.1 208 769-1016 15-255 (507)
129 COG2256 MGS1 ATPase related to 99.6 1.3E-14 2.7E-19 163.1 16.7 168 408-626 21-204 (436)
130 PRK14963 DNA polymerase III su 99.6 8.3E-14 1.8E-18 167.0 23.8 204 769-1016 8-239 (504)
131 PRK08691 DNA polymerase III su 99.6 3.2E-14 7E-19 172.3 20.3 204 770-1016 11-243 (709)
132 PRK04195 replication factor C 99.6 6.8E-14 1.5E-18 168.2 22.7 206 770-1014 9-222 (482)
133 PRK14956 DNA polymerase III su 99.6 3.1E-14 6.7E-19 167.1 18.4 185 408-640 15-227 (484)
134 PRK07003 DNA polymerase III su 99.6 3.8E-14 8.1E-19 171.6 19.3 185 408-640 13-225 (830)
135 PRK05563 DNA polymerase III su 99.6 7.8E-14 1.7E-18 169.6 22.1 202 769-1013 10-240 (559)
136 PRK12323 DNA polymerase III su 99.6 2.2E-14 4.8E-19 171.8 16.7 185 408-640 13-230 (700)
137 PRK14951 DNA polymerase III su 99.6 7.4E-14 1.6E-18 169.7 21.5 201 771-1014 12-246 (618)
138 PRK10865 protein disaggregatio 99.6 2.2E-14 4.8E-19 182.1 17.3 184 772-980 175-381 (857)
139 PLN03025 replication factor C 99.6 9.1E-14 2E-18 158.6 20.6 200 770-1014 8-220 (319)
140 PRK14957 DNA polymerase III su 99.6 1.2E-13 2.7E-18 165.8 22.4 203 770-1015 11-242 (546)
141 PRK05342 clpX ATP-dependent pr 99.6 7.4E-14 1.6E-18 163.3 19.8 223 776-1000 72-383 (412)
142 PRK05022 anaerobic nitric oxid 99.6 1.2E-14 2.5E-19 175.8 13.4 267 773-1069 185-508 (509)
143 PRK07940 DNA polymerase III su 99.6 4.7E-14 1E-18 164.2 16.6 191 773-988 3-215 (394)
144 PRK07764 DNA polymerase III su 99.6 1.3E-13 2.8E-18 172.8 21.2 186 770-992 10-226 (824)
145 PRK07133 DNA polymerase III su 99.5 2.1E-13 4.5E-18 166.9 22.0 193 769-992 12-224 (725)
146 PRK11388 DNA-binding transcrip 99.5 1.5E-14 3.2E-19 179.9 12.2 265 771-1070 321-632 (638)
147 PRK15424 propionate catabolism 99.5 2E-14 4.3E-19 172.8 12.7 262 772-1068 216-536 (538)
148 PRK14969 DNA polymerase III su 99.5 1.3E-13 2.9E-18 166.4 20.0 202 770-1014 11-241 (527)
149 KOG0989 Replication factor C, 99.5 1.2E-13 2.7E-18 150.2 17.0 183 769-989 30-229 (346)
150 PRK14952 DNA polymerase III su 99.5 2.1E-13 4.6E-18 165.2 21.1 187 770-993 8-225 (584)
151 PRK14959 DNA polymerase III su 99.5 2.4E-13 5.2E-18 164.2 21.3 203 769-1014 10-241 (624)
152 PRK11608 pspF phage shock prot 99.5 3E-14 6.5E-19 162.9 12.6 260 774-1068 5-325 (326)
153 PRK14962 DNA polymerase III su 99.5 1.7E-13 3.6E-18 163.2 19.3 182 408-637 11-220 (472)
154 TIGR01817 nifA Nif-specific re 99.5 1.8E-14 3.9E-19 175.4 11.5 265 771-1071 192-532 (534)
155 PRK12402 replication factor C 99.5 3.2E-13 7E-18 154.6 21.0 210 770-1018 10-250 (337)
156 PRK14965 DNA polymerase III su 99.5 2E-13 4.4E-18 166.7 20.3 187 770-993 11-226 (576)
157 TIGR02397 dnaX_nterm DNA polym 99.5 3.2E-13 6.9E-18 156.0 20.5 203 770-1015 9-240 (355)
158 PRK10787 DNA-binding ATP-depen 99.5 1.8E-13 3.9E-18 171.7 19.7 221 775-1016 322-581 (784)
159 PRK00149 dnaA chromosomal repl 99.5 1.2E-13 2.7E-18 164.7 17.4 189 810-1017 149-349 (450)
160 TIGR02974 phageshock_pspF psp 99.5 6.3E-14 1.4E-18 160.2 14.2 255 777-1066 1-329 (329)
161 TIGR03346 chaperone_ClpB ATP-d 99.5 2.1E-13 4.6E-18 173.8 20.5 200 771-995 169-396 (852)
162 TIGR02329 propionate_PrpR prop 99.5 2.4E-14 5.3E-19 172.2 11.2 261 772-1065 209-526 (526)
163 PRK05896 DNA polymerase III su 99.5 2.7E-13 5.9E-18 163.0 20.0 186 770-992 11-225 (605)
164 PRK14960 DNA polymerase III su 99.5 2E-13 4.4E-18 164.0 18.6 185 408-640 12-224 (702)
165 PRK14949 DNA polymerase III su 99.5 2.5E-13 5.4E-18 167.5 19.6 185 408-640 13-225 (944)
166 PRK08451 DNA polymerase III su 99.5 6.6E-13 1.4E-17 158.9 22.6 203 770-1015 9-240 (535)
167 PRK07994 DNA polymerase III su 99.5 2.8E-13 6.1E-18 165.0 19.5 185 408-640 13-225 (647)
168 TIGR00362 DnaA chromosomal rep 99.5 2.3E-13 5E-18 160.3 18.2 190 809-1017 136-337 (405)
169 PRK14953 DNA polymerase III su 99.5 6E-13 1.3E-17 159.1 21.6 203 769-1014 10-241 (486)
170 PRK06647 DNA polymerase III su 99.5 3.9E-13 8.4E-18 163.1 20.2 203 769-1014 10-241 (563)
171 PRK04195 replication factor C 99.5 4.1E-13 8.8E-18 161.5 19.5 187 408-640 11-204 (482)
172 TIGR00382 clpX endopeptidase C 99.5 4.1E-13 8.8E-18 156.4 18.7 224 775-1000 77-389 (413)
173 TIGR02928 orc1/cdc6 family rep 99.5 1.3E-12 2.9E-17 151.5 22.7 223 772-1018 12-275 (365)
174 PRK06305 DNA polymerase III su 99.5 7.6E-13 1.6E-17 157.3 20.9 202 770-1014 12-243 (451)
175 TIGR00390 hslU ATP-dependent p 99.5 6.2E-13 1.3E-17 152.9 19.3 239 775-1016 12-429 (441)
176 PRK14961 DNA polymerase III su 99.5 5E-13 1.1E-17 155.1 18.7 185 408-640 13-225 (363)
177 TIGR02903 spore_lon_C ATP-depe 99.5 4.1E-12 8.8E-17 156.3 27.6 218 769-1017 148-430 (615)
178 PRK14958 DNA polymerase III su 99.5 3.4E-13 7.4E-18 162.0 17.7 185 408-640 13-225 (509)
179 PRK06645 DNA polymerase III su 99.5 5.4E-13 1.2E-17 159.5 19.2 187 408-642 18-236 (507)
180 PRK00411 cdc6 cell division co 99.5 1.1E-12 2.4E-17 153.8 21.3 225 773-1020 28-285 (394)
181 TIGR02902 spore_lonB ATP-depen 99.5 3.1E-13 6.8E-18 163.7 17.0 194 408-646 62-315 (531)
182 COG2812 DnaX DNA polymerase II 99.5 4.7E-13 1E-17 158.3 18.0 196 769-995 10-228 (515)
183 PHA02544 44 clamp loader, smal 99.5 1.2E-12 2.7E-17 148.9 19.8 187 770-992 16-211 (316)
184 PRK09111 DNA polymerase III su 99.5 1.5E-12 3.3E-17 158.6 21.7 208 771-1015 20-255 (598)
185 PRK15429 formate hydrogenlyase 99.5 3E-13 6.6E-18 169.3 16.1 260 771-1069 372-684 (686)
186 PRK14955 DNA polymerase III su 99.5 9.3E-13 2E-17 154.6 19.0 207 770-1014 11-254 (397)
187 PRK10820 DNA-binding transcrip 99.5 2.4E-13 5.1E-18 164.7 14.1 264 770-1069 199-513 (520)
188 PLN03025 replication factor C 99.5 7.3E-13 1.6E-17 151.3 17.3 181 408-637 10-199 (319)
189 PRK05201 hslU ATP-dependent pr 99.5 6.9E-13 1.5E-17 152.6 17.0 221 775-998 15-409 (443)
190 PRK14970 DNA polymerase III su 99.5 2.2E-12 4.8E-17 150.1 21.3 209 769-1014 11-230 (367)
191 PRK08691 DNA polymerase III su 99.5 8.2E-13 1.8E-17 160.3 18.1 186 408-641 13-226 (709)
192 PRK14954 DNA polymerase III su 99.5 2.4E-12 5.2E-17 157.1 22.0 207 770-1014 11-254 (620)
193 PRK13342 recombination factor 99.5 1.1E-12 2.4E-17 154.9 18.5 181 408-640 9-201 (413)
194 PRK07940 DNA polymerase III su 99.5 1E-12 2.2E-17 153.1 17.8 187 409-637 3-216 (394)
195 PRK05342 clpX ATP-dependent pr 99.5 2.3E-12 4.9E-17 150.9 20.6 235 412-647 72-382 (412)
196 PRK14964 DNA polymerase III su 99.5 1.1E-12 2.3E-17 155.8 17.9 186 408-641 10-223 (491)
197 PRK14948 DNA polymerase III su 99.4 3.3E-12 7.1E-17 156.7 21.9 185 769-990 10-225 (620)
198 KOG0989 Replication factor C, 99.4 1.1E-12 2.3E-17 143.0 15.5 174 408-626 33-222 (346)
199 KOG1969 DNA replication checkp 99.4 5.7E-12 1.2E-16 149.5 22.3 203 808-1035 325-555 (877)
200 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.3E-12 5E-17 139.2 17.8 202 772-1014 12-225 (226)
201 PRK06893 DNA replication initi 99.4 3.1E-12 6.8E-17 139.3 18.8 180 810-1014 40-227 (229)
202 PRK14088 dnaA chromosomal repl 99.4 1.7E-12 3.7E-17 154.0 17.3 190 810-1017 131-332 (440)
203 PF05673 DUF815: Protein of un 99.4 3.8E-12 8.3E-17 136.9 18.0 203 407-638 23-244 (249)
204 PRK05201 hslU ATP-dependent pr 99.4 1.7E-12 3.6E-17 149.4 16.3 197 411-624 15-380 (443)
205 PRK08903 DnaA regulatory inact 99.4 4.7E-12 1E-16 137.4 19.0 200 771-1015 14-224 (227)
206 PTZ00112 origin recognition co 99.4 9.1E-12 2E-16 151.3 23.0 181 411-625 755-969 (1164)
207 PRK14951 DNA polymerase III su 99.4 2.5E-12 5.5E-17 156.4 18.5 185 408-640 13-230 (618)
208 PHA02544 44 clamp loader, smal 99.4 2.9E-12 6.2E-17 145.9 17.8 176 408-626 18-201 (316)
209 PRK07764 DNA polymerase III su 99.4 2.6E-12 5.6E-17 161.3 18.9 188 408-639 12-225 (824)
210 PRK08084 DNA replication initi 99.4 7.2E-12 1.6E-16 137.0 20.0 178 810-1014 46-233 (235)
211 PRK14963 DNA polymerase III su 99.4 3.8E-12 8.3E-17 152.7 19.3 183 408-638 11-220 (504)
212 PRK14957 DNA polymerase III su 99.4 4E-12 8.8E-17 152.9 19.4 185 408-640 13-225 (546)
213 PRK14959 DNA polymerase III su 99.4 3.2E-12 6.9E-17 154.6 18.5 186 408-638 13-223 (624)
214 PRK14950 DNA polymerase III su 99.4 8.5E-12 1.8E-16 153.2 22.5 202 770-1014 11-242 (585)
215 PRK11361 acetoacetate metaboli 99.4 7.9E-13 1.7E-17 158.0 13.1 259 775-1068 143-456 (457)
216 PRK14971 DNA polymerase III su 99.4 9.6E-12 2.1E-16 152.6 22.5 186 771-993 13-228 (614)
217 PRK14969 DNA polymerase III su 99.4 2.7E-12 5.7E-17 155.3 17.4 186 408-641 13-226 (527)
218 TIGR00390 hslU ATP-dependent p 99.4 2.9E-12 6.3E-17 147.4 16.7 198 411-624 12-378 (441)
219 PRK05563 DNA polymerase III su 99.4 4E-12 8.7E-17 154.7 18.6 186 407-640 12-225 (559)
220 PRK00440 rfc replication facto 99.4 1.2E-11 2.7E-16 140.5 21.4 205 770-1019 12-228 (319)
221 PRK14952 DNA polymerase III su 99.4 4.5E-12 9.8E-17 153.8 18.7 185 408-640 10-224 (584)
222 PRK12402 replication factor C 99.4 7.7E-12 1.7E-16 143.3 19.7 176 409-626 13-218 (337)
223 TIGR02928 orc1/cdc6 family rep 99.4 8.3E-12 1.8E-16 144.9 19.9 204 411-647 15-258 (365)
224 TIGR02915 PEP_resp_reg putativ 99.4 1.3E-12 2.8E-17 155.8 13.3 261 775-1068 139-444 (445)
225 PRK00411 cdc6 cell division co 99.4 1.6E-11 3.4E-16 144.1 22.2 201 411-643 30-262 (394)
226 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.6E-12 1E-16 136.9 16.1 184 414-645 20-211 (226)
227 PRK15115 response regulator Gl 99.4 1.3E-12 2.9E-17 155.6 12.9 233 809-1069 157-438 (444)
228 PRK10923 glnG nitrogen regulat 99.4 7.7E-13 1.7E-17 158.8 10.9 257 774-1068 137-468 (469)
229 PRK05896 DNA polymerase III su 99.4 5.7E-12 1.2E-16 151.7 18.2 184 408-639 13-224 (605)
230 TIGR00382 clpX endopeptidase C 99.4 7.5E-12 1.6E-16 145.9 18.6 234 411-645 77-386 (413)
231 TIGR00362 DnaA chromosomal rep 99.4 2.3E-12 4.9E-17 151.9 14.6 173 443-643 135-318 (405)
232 PRK00149 dnaA chromosomal repl 99.4 1.6E-12 3.5E-17 155.1 13.4 172 444-643 148-330 (450)
233 PTZ00112 origin recognition co 99.4 1.4E-11 3E-16 149.8 20.8 218 774-1019 754-1008(1164)
234 PRK12422 chromosomal replicati 99.4 4.4E-12 9.5E-17 150.3 16.3 194 809-1017 141-343 (445)
235 PRK07133 DNA polymerase III su 99.4 7.8E-12 1.7E-16 153.3 18.8 184 408-639 15-223 (725)
236 TIGR02397 dnaX_nterm DNA polym 99.4 7.3E-12 1.6E-16 144.7 17.2 185 408-640 11-223 (355)
237 PRK14965 DNA polymerase III su 99.4 7.9E-12 1.7E-16 152.8 17.7 185 408-640 13-225 (576)
238 TIGR02640 gas_vesic_GvpN gas v 99.4 1E-11 2.3E-16 137.9 17.1 133 809-958 21-198 (262)
239 COG1224 TIP49 DNA helicase TIP 99.4 3.4E-11 7.4E-16 133.2 20.4 130 869-1019 292-434 (450)
240 PRK14086 dnaA chromosomal repl 99.4 1.8E-11 3.8E-16 147.6 19.5 191 810-1019 315-517 (617)
241 PRK06647 DNA polymerase III su 99.4 1.2E-11 2.6E-16 150.2 18.2 186 407-640 12-225 (563)
242 PRK06893 DNA replication initi 99.4 8.3E-12 1.8E-16 136.0 15.0 160 445-638 40-206 (229)
243 PRK14953 DNA polymerase III su 99.3 1.5E-11 3.2E-16 147.3 17.9 185 408-640 13-225 (486)
244 PRK13341 recombination factor 99.3 1.2E-11 2.6E-16 153.6 17.2 181 408-640 25-222 (725)
245 COG1221 PspF Transcriptional r 99.3 2.6E-12 5.7E-17 147.7 10.2 271 771-1070 74-400 (403)
246 PRK06305 DNA polymerase III su 99.3 3E-11 6.6E-16 143.7 19.5 182 408-637 14-224 (451)
247 PRK08084 DNA replication initi 99.3 2.6E-11 5.6E-16 132.6 17.5 179 415-639 28-213 (235)
248 PRK14088 dnaA chromosomal repl 99.3 5.2E-12 1.1E-16 149.9 12.8 175 444-643 130-313 (440)
249 PRK09111 DNA polymerase III su 99.3 2.6E-11 5.5E-16 148.0 18.9 189 408-640 21-238 (598)
250 PRK08903 DnaA regulatory inact 99.3 2.9E-11 6.2E-16 131.3 17.4 162 442-645 40-209 (227)
251 COG3284 AcoR Transcriptional a 99.3 1.1E-12 2.3E-17 155.4 5.9 230 809-1069 336-605 (606)
252 PRK08727 hypothetical protein; 99.3 8.5E-11 1.8E-15 128.4 20.3 179 810-1016 42-230 (233)
253 PF05673 DUF815: Protein of un 99.3 3.8E-11 8.1E-16 129.4 17.0 191 769-989 21-243 (249)
254 PRK14970 DNA polymerase III su 99.3 4.4E-11 9.5E-16 139.2 18.9 183 408-638 14-212 (367)
255 TIGR01818 ntrC nitrogen regula 99.3 1.2E-11 2.6E-16 148.2 14.6 258 775-1066 134-463 (463)
256 PRK08451 DNA polymerase III su 99.3 4E-11 8.6E-16 143.8 18.5 187 408-642 11-225 (535)
257 PRK05642 DNA replication initi 99.3 7.6E-11 1.6E-15 128.8 19.1 180 809-1015 45-233 (234)
258 PRK14955 DNA polymerase III su 99.3 3E-11 6.6E-16 141.9 16.7 184 408-639 13-232 (397)
259 PRK14086 dnaA chromosomal repl 99.3 1.9E-11 4E-16 147.4 14.7 173 445-643 315-496 (617)
260 PRK14948 DNA polymerase III su 99.3 5.5E-11 1.2E-15 146.0 18.3 182 408-637 13-224 (620)
261 PRK14087 dnaA chromosomal repl 99.3 6.3E-11 1.4E-15 140.9 17.9 192 809-1018 141-349 (450)
262 PF00308 Bac_DnaA: Bacterial d 99.3 2.6E-11 5.6E-16 131.2 12.9 171 444-640 34-213 (219)
263 PRK05642 DNA replication initi 99.3 5.7E-11 1.2E-15 129.8 15.5 166 444-643 45-216 (234)
264 PRK06620 hypothetical protein; 99.3 1.2E-10 2.5E-15 125.6 17.5 164 810-1014 45-213 (214)
265 COG2812 DnaX DNA polymerase II 99.3 3.1E-11 6.8E-16 143.0 14.2 193 408-642 13-227 (515)
266 PRK14954 DNA polymerase III su 99.3 1.1E-10 2.3E-15 142.8 19.2 182 408-637 13-230 (620)
267 PRK14950 DNA polymerase III su 99.3 9.2E-11 2E-15 144.1 18.6 183 408-638 13-224 (585)
268 PRK13407 bchI magnesium chelat 99.3 5.2E-11 1.1E-15 135.8 15.2 215 771-1016 4-305 (334)
269 TIGR02640 gas_vesic_GvpN gas v 99.3 1E-10 2.2E-15 130.0 17.1 133 443-605 20-198 (262)
270 cd00009 AAA The AAA+ (ATPases 99.3 5.4E-11 1.2E-15 117.3 13.4 121 808-943 18-150 (151)
271 PF00308 Bac_DnaA: Bacterial d 99.3 7.8E-11 1.7E-15 127.5 15.2 169 811-995 36-216 (219)
272 PRK08727 hypothetical protein; 99.3 1.5E-10 3.1E-15 126.6 17.3 150 444-626 41-196 (233)
273 PRK12422 chromosomal replicati 99.2 5.2E-11 1.1E-15 141.3 14.8 171 444-639 141-317 (445)
274 KOG2028 ATPase related to the 99.2 6.2E-11 1.3E-15 130.9 14.1 178 407-635 134-337 (554)
275 PRK00440 rfc replication facto 99.2 1.7E-10 3.6E-15 131.2 18.3 185 408-637 14-205 (319)
276 COG0542 clpA ATP-binding subun 99.2 1.2E-10 2.6E-15 142.8 18.0 219 771-1015 166-411 (786)
277 TIGR02903 spore_lon_C ATP-depe 99.2 1.5E-10 3.3E-15 142.5 18.7 191 408-640 151-399 (615)
278 PRK10365 transcriptional regul 99.2 3.1E-11 6.6E-16 143.7 11.9 235 809-1065 162-441 (441)
279 cd00009 AAA The AAA+ (ATPases 99.2 1E-10 2.2E-15 115.3 13.5 120 443-575 18-149 (151)
280 COG1224 TIP49 DNA helicase TIP 99.2 4.1E-10 9E-15 124.8 19.2 115 504-649 292-418 (450)
281 PRK05564 DNA polymerase III su 99.2 7.2E-10 1.6E-14 126.4 21.8 174 773-983 2-187 (313)
282 PRK09112 DNA polymerase III su 99.2 4.3E-10 9.3E-15 129.6 20.1 188 770-989 18-242 (351)
283 PHA02244 ATPase-like protein 99.2 5.4E-10 1.2E-14 127.3 20.4 122 808-947 118-263 (383)
284 PRK14087 dnaA chromosomal repl 99.2 9.3E-11 2E-15 139.5 14.6 175 444-644 141-328 (450)
285 PRK06620 hypothetical protein; 99.2 2.4E-10 5.2E-15 123.2 15.2 148 445-639 45-193 (214)
286 COG1474 CDC6 Cdc6-related prot 99.2 1.3E-09 2.7E-14 126.3 21.6 218 776-1019 18-267 (366)
287 CHL00081 chlI Mg-protoporyphyr 99.2 2.6E-10 5.6E-15 130.5 15.7 161 770-958 12-232 (350)
288 PRK07471 DNA polymerase III su 99.2 7.9E-10 1.7E-14 128.1 19.5 181 770-983 14-235 (365)
289 PRK14971 DNA polymerase III su 99.2 5.2E-10 1.1E-14 137.5 18.9 184 408-639 14-226 (614)
290 TIGR01650 PD_CobS cobaltochela 99.2 1.5E-10 3.3E-15 130.5 12.5 137 443-607 63-235 (327)
291 TIGR02030 BchI-ChlI magnesium 99.2 6E-10 1.3E-14 127.5 17.2 212 773-1017 2-309 (337)
292 COG3283 TyrR Transcriptional r 99.2 1.7E-10 3.7E-15 127.5 12.0 265 770-1069 199-508 (511)
293 COG2607 Predicted ATPase (AAA+ 99.1 1.9E-09 4.1E-14 114.3 18.7 207 406-639 55-277 (287)
294 COG0470 HolB ATPase involved i 99.1 8.8E-10 1.9E-14 125.4 17.7 172 776-992 2-201 (325)
295 TIGR01650 PD_CobS cobaltochela 99.1 1.5E-10 3.2E-15 130.6 11.0 137 808-960 63-235 (327)
296 TIGR00678 holB DNA polymerase 99.1 7.2E-10 1.6E-14 116.9 15.5 144 807-978 12-183 (188)
297 PRK04132 replication factor C 99.1 9.8E-10 2.1E-14 137.5 18.8 172 811-1014 566-751 (846)
298 PRK09112 DNA polymerase III su 99.1 1.6E-09 3.5E-14 124.9 18.9 188 408-639 20-244 (351)
299 PF06068 TIP49: TIP49 C-termin 99.1 1.3E-09 2.8E-14 123.0 17.1 73 411-490 24-98 (398)
300 PRK09087 hypothetical protein; 99.1 1.6E-09 3.5E-14 117.8 17.2 171 811-1017 46-222 (226)
301 PRK07399 DNA polymerase III su 99.1 6.2E-10 1.3E-14 126.6 14.4 179 773-984 2-219 (314)
302 PRK13531 regulatory ATPase Rav 99.1 1.7E-09 3.7E-14 127.2 18.3 150 775-957 20-193 (498)
303 KOG0991 Replication factor C, 99.1 1.2E-09 2.5E-14 114.9 14.8 183 772-992 24-216 (333)
304 TIGR02442 Cob-chelat-sub cobal 99.1 7.9E-10 1.7E-14 137.1 16.2 212 773-1017 2-304 (633)
305 KOG1969 DNA replication checkp 99.1 1.5E-09 3.2E-14 129.4 17.2 172 440-644 322-516 (877)
306 TIGR00764 lon_rel lon-related 99.1 2.3E-09 5E-14 131.9 19.1 120 894-1017 230-391 (608)
307 PRK13407 bchI magnesium chelat 99.1 8.4E-10 1.8E-14 126.0 13.9 159 408-605 5-216 (334)
308 PRK09087 hypothetical protein; 99.1 9.5E-10 2.1E-14 119.5 13.7 153 444-639 44-199 (226)
309 COG1474 CDC6 Cdc6-related prot 99.1 3.9E-09 8.4E-14 122.2 18.8 205 411-650 17-252 (366)
310 PF06068 TIP49: TIP49 C-termin 99.1 2.6E-09 5.6E-14 120.6 16.6 93 869-980 279-384 (398)
311 COG0593 DnaA ATPase involved i 99.1 3.4E-09 7.4E-14 122.6 17.9 192 809-1019 113-315 (408)
312 PF00158 Sigma54_activat: Sigm 99.1 1.2E-10 2.6E-15 120.8 5.5 136 777-942 1-160 (168)
313 TIGR00678 holB DNA polymerase 99.1 2.5E-09 5.3E-14 112.8 14.9 143 443-626 13-183 (188)
314 TIGR00368 Mg chelatase-related 99.0 2.1E-09 4.6E-14 128.9 16.0 208 773-1015 190-497 (499)
315 COG0714 MoxR-like ATPases [Gen 99.0 5.2E-10 1.1E-14 128.4 10.1 148 777-958 26-203 (329)
316 PRK08058 DNA polymerase III su 99.0 1.7E-09 3.8E-14 124.0 13.6 149 773-956 3-180 (329)
317 PRK05564 DNA polymerase III su 99.0 4.9E-09 1.1E-13 119.5 17.2 171 410-629 3-185 (313)
318 COG0593 DnaA ATPase involved i 99.0 2.3E-09 5E-14 124.1 14.4 175 443-643 112-294 (408)
319 PF07728 AAA_5: AAA domain (dy 99.0 8.2E-11 1.8E-15 117.6 1.9 109 811-936 1-139 (139)
320 KOG0991 Replication factor C, 99.0 2.5E-09 5.5E-14 112.4 12.7 173 409-626 25-206 (333)
321 smart00382 AAA ATPases associa 99.0 1.9E-09 4.1E-14 105.0 11.0 123 809-945 2-147 (148)
322 COG5271 MDN1 AAA ATPase contai 99.0 1.1E-08 2.4E-13 127.6 19.5 134 807-958 1541-1703(4600)
323 smart00382 AAA ATPases associa 99.0 2.7E-09 5.8E-14 103.9 11.6 123 444-575 2-144 (148)
324 PRK05707 DNA polymerase III su 99.0 4.5E-09 9.7E-14 120.3 15.0 153 807-983 20-200 (328)
325 PRK07471 DNA polymerase III su 99.0 7.6E-09 1.6E-13 120.0 17.1 175 408-627 16-231 (365)
326 PF07728 AAA_5: AAA domain (dy 99.0 5E-10 1.1E-14 112.0 6.3 109 446-569 1-139 (139)
327 COG1123 ATPase components of v 99.0 8.7E-10 1.9E-14 130.7 9.2 56 858-925 437-492 (539)
328 PF05621 TniB: Bacterial TniB 99.0 2.6E-08 5.6E-13 110.8 20.1 216 771-1012 33-284 (302)
329 CHL00081 chlI Mg-protoporyphyr 99.0 4.4E-09 9.6E-14 120.5 14.2 159 408-605 14-232 (350)
330 COG1220 HslU ATP-dependent pro 99.0 4.4E-09 9.6E-14 115.9 13.4 84 869-955 251-346 (444)
331 TIGR03015 pepcterm_ATPase puta 99.0 2.4E-08 5.1E-13 111.0 19.2 189 811-1018 45-267 (269)
332 PRK11331 5-methylcytosine-spec 99.0 4.7E-09 1E-13 122.7 14.0 121 809-944 194-357 (459)
333 TIGR02030 BchI-ChlI magnesium 99.0 9.1E-09 2E-13 117.8 15.9 154 409-604 2-218 (337)
334 COG1220 HslU ATP-dependent pro 99.0 7.6E-09 1.6E-13 114.1 14.1 81 506-602 253-346 (444)
335 PF07724 AAA_2: AAA domain (Cd 98.9 2.3E-09 5.1E-14 111.5 9.5 111 443-557 2-131 (171)
336 PRK04132 replication factor C 98.9 8.5E-09 1.8E-13 129.2 15.8 147 444-626 564-723 (846)
337 COG2607 Predicted ATPase (AAA+ 98.9 3.1E-08 6.6E-13 105.3 17.4 168 768-965 53-246 (287)
338 PF01078 Mg_chelatase: Magnesi 98.9 7.3E-10 1.6E-14 117.2 5.1 45 773-832 1-45 (206)
339 TIGR00602 rad24 checkpoint pro 98.9 1.6E-08 3.4E-13 124.0 17.2 222 769-1017 78-355 (637)
340 PHA02244 ATPase-like protein 98.9 7E-09 1.5E-13 118.4 12.9 116 443-575 118-258 (383)
341 COG1219 ClpX ATP-dependent pro 98.9 2.2E-09 4.8E-14 117.5 8.3 131 775-908 61-203 (408)
342 PRK11331 5-methylcytosine-spec 98.9 8E-09 1.7E-13 120.7 13.3 139 410-575 174-355 (459)
343 TIGR00602 rad24 checkpoint pro 98.9 1.4E-08 3E-13 124.4 15.9 200 408-643 81-328 (637)
344 KOG1942 DNA helicase, TBP-inte 98.9 3E-08 6.5E-13 107.3 16.3 127 869-1016 297-437 (456)
345 COG0470 HolB ATPase involved i 98.9 1.2E-08 2.6E-13 116.1 14.1 136 412-575 2-165 (325)
346 KOG0745 Putative ATP-dependent 98.9 2.3E-08 5E-13 113.4 15.8 99 810-908 227-332 (564)
347 PF07724 AAA_2: AAA domain (Cd 98.9 2.9E-09 6.2E-14 110.9 7.8 113 809-925 3-132 (171)
348 COG0714 MoxR-like ATPases [Gen 98.9 1.1E-08 2.4E-13 117.5 12.9 120 443-575 42-186 (329)
349 COG5271 MDN1 AAA ATPase contai 98.9 1E-07 2.2E-12 119.4 21.0 133 444-606 888-1048(4600)
350 COG1219 ClpX ATP-dependent pro 98.9 4.8E-09 1E-13 115.0 8.5 129 412-541 62-203 (408)
351 smart00350 MCM minichromosome 98.9 2.6E-08 5.6E-13 120.8 15.9 163 776-958 204-400 (509)
352 PRK07399 DNA polymerase III su 98.9 3.1E-08 6.6E-13 112.8 15.5 174 410-628 3-215 (314)
353 PRK05707 DNA polymerase III su 98.8 4.5E-08 9.7E-13 112.1 15.6 149 443-628 21-197 (328)
354 PRK10982 galactose/methyl gala 98.8 2.4E-08 5.1E-13 121.0 13.6 31 438-468 18-48 (491)
355 PRK10938 putative molybdenum t 98.8 1.5E-08 3.3E-13 122.6 11.7 31 438-468 23-53 (490)
356 PRK15424 propionate catabolism 98.8 2E-08 4.3E-13 121.5 12.2 200 408-641 216-463 (538)
357 PF13177 DNA_pol3_delta2: DNA 98.8 1.9E-08 4.1E-13 103.8 10.5 133 779-944 1-160 (162)
358 KOG1942 DNA helicase, TBP-inte 98.8 1.3E-07 2.9E-12 102.4 16.6 109 504-643 297-418 (456)
359 COG3829 RocR Transcriptional r 98.8 1.3E-08 2.7E-13 119.5 9.6 200 407-640 241-476 (560)
360 TIGR02031 BchD-ChlD magnesium 98.8 6.6E-08 1.4E-12 118.9 16.4 191 810-1017 17-258 (589)
361 TIGR02974 phageshock_pspF psp 98.8 6.4E-08 1.4E-12 111.1 15.3 196 413-642 1-232 (329)
362 PRK06871 DNA polymerase III su 98.8 1.2E-07 2.5E-12 108.2 17.0 151 807-983 22-200 (325)
363 PRK09862 putative ATP-dependen 98.8 5.1E-08 1.1E-12 116.8 14.2 208 773-1015 189-490 (506)
364 PRK06964 DNA polymerase III su 98.8 7.5E-08 1.6E-12 110.5 15.0 153 807-984 19-223 (342)
365 TIGR02329 propionate_PrpR prop 98.8 3.1E-08 6.7E-13 119.8 12.2 201 408-642 209-449 (526)
366 PRK08058 DNA polymerase III su 98.8 4.1E-08 9E-13 112.7 12.6 148 410-603 4-180 (329)
367 PRK10762 D-ribose transporter 98.8 4.7E-08 1E-12 118.6 13.8 31 438-468 24-54 (501)
368 PRK13549 xylose transporter AT 98.8 4.4E-08 9.5E-13 119.1 13.5 32 438-469 25-56 (506)
369 PRK13531 regulatory ATPase Rav 98.8 5.1E-08 1.1E-12 114.9 13.5 153 411-604 20-193 (498)
370 COG2204 AtoC Response regulato 98.8 3.4E-08 7.3E-13 116.1 11.6 198 410-642 140-373 (464)
371 PRK10636 putative ABC transpor 98.8 3.8E-08 8.3E-13 122.6 12.8 31 438-468 21-51 (638)
372 PRK05022 anaerobic nitric oxid 98.8 4.2E-08 9.2E-13 119.1 12.7 201 409-643 185-420 (509)
373 TIGR02442 Cob-chelat-sub cobal 98.8 6.4E-08 1.4E-12 120.2 14.5 153 409-603 2-212 (633)
374 PF07726 AAA_3: ATPase family 98.7 3.5E-09 7.6E-14 103.6 2.5 104 446-569 1-129 (131)
375 PRK15134 microcin C ABC transp 98.7 1.2E-08 2.5E-13 124.7 7.6 32 438-469 29-60 (529)
376 TIGR03015 pepcterm_ATPase puta 98.7 2.3E-07 5E-12 103.0 17.3 175 445-648 44-251 (269)
377 smart00350 MCM minichromosome 98.7 7.7E-08 1.7E-12 116.7 14.5 165 411-605 203-400 (509)
378 KOG0990 Replication factor C, 98.7 1E-07 2.2E-12 105.2 13.7 187 771-995 37-237 (360)
379 PRK11608 pspF phage shock prot 98.7 9.8E-08 2.1E-12 109.5 14.4 198 411-642 6-239 (326)
380 PRK08769 DNA polymerase III su 98.7 1.7E-07 3.8E-12 106.6 16.0 156 807-985 24-207 (319)
381 PRK11147 ABC transporter ATPas 98.7 1E-07 2.2E-12 118.9 15.5 31 438-468 23-53 (635)
382 TIGR01817 nifA Nif-specific re 98.7 8.6E-08 1.9E-12 117.2 14.4 201 408-642 193-427 (534)
383 PRK13765 ATP-dependent proteas 98.7 1.2E-07 2.7E-12 116.5 15.7 130 870-1016 228-399 (637)
384 PRK07993 DNA polymerase III su 98.7 1.6E-07 3.4E-12 107.9 15.6 154 806-984 21-202 (334)
385 PRK11388 DNA-binding transcrip 98.7 6.8E-08 1.5E-12 120.6 13.5 199 409-641 323-552 (638)
386 COG3604 FhlA Transcriptional r 98.7 3.7E-08 8.1E-13 114.1 10.1 201 409-643 221-456 (550)
387 PF07726 AAA_3: ATPase family 98.7 3.3E-09 7.2E-14 103.8 1.3 104 811-936 1-129 (131)
388 PRK09700 D-allose transporter 98.7 8.3E-08 1.8E-12 116.8 13.7 31 438-468 25-55 (510)
389 PF00158 Sigma54_activat: Sigm 98.7 3.2E-08 7E-13 102.7 8.4 136 413-575 1-160 (168)
390 TIGR02633 xylG D-xylose ABC tr 98.7 9E-08 2E-12 116.2 13.5 31 438-468 21-51 (500)
391 PRK15439 autoinducer 2 ABC tra 98.7 8.2E-08 1.8E-12 116.8 12.7 31 438-468 31-61 (510)
392 PRK11288 araG L-arabinose tran 98.7 1.5E-07 3.3E-12 114.2 14.5 31 438-468 24-54 (501)
393 PRK15429 formate hydrogenlyase 98.7 1.3E-07 2.9E-12 118.8 14.3 200 408-642 373-608 (686)
394 COG0488 Uup ATPase components 98.7 1.1E-07 2.4E-12 114.8 12.7 31 438-468 23-53 (530)
395 KOG2680 DNA helicase TIP49, TB 98.7 9.9E-07 2.2E-11 96.1 18.6 130 869-1019 289-431 (454)
396 PRK06090 DNA polymerase III su 98.7 1.4E-06 3.1E-11 99.1 21.0 149 806-982 22-197 (319)
397 PF01078 Mg_chelatase: Magnesi 98.7 2.2E-08 4.8E-13 106.1 5.6 45 410-468 2-46 (206)
398 COG4172 ABC-type uncharacteriz 98.7 1.6E-07 3.5E-12 106.1 12.5 54 858-923 434-487 (534)
399 PRK15064 ABC transporter ATP-b 98.7 2.2E-07 4.7E-12 113.7 14.8 31 438-468 21-51 (530)
400 PRK06871 DNA polymerase III su 98.7 6.7E-07 1.4E-11 102.0 17.7 163 415-627 6-196 (325)
401 TIGR03269 met_CoM_red_A2 methy 98.6 1.3E-07 2.8E-12 115.3 12.5 31 438-468 20-50 (520)
402 PRK10820 DNA-binding transcrip 98.6 2.2E-07 4.7E-12 113.1 14.0 202 407-642 200-436 (520)
403 COG0606 Predicted ATPase with 98.6 3.7E-08 8.1E-13 114.2 6.9 47 771-832 175-221 (490)
404 KOG0745 Putative ATP-dependent 98.6 1.2E-07 2.7E-12 107.6 10.7 97 444-540 226-331 (564)
405 PF13177 DNA_pol3_delta2: DNA 98.6 2E-07 4.3E-12 96.4 11.2 131 415-575 1-158 (162)
406 KOG2680 DNA helicase TIP49, TB 98.6 9.4E-07 2E-11 96.3 16.4 116 504-650 289-416 (454)
407 PRK10261 glutathione transport 98.6 1.9E-07 4.2E-12 116.1 12.9 56 858-925 471-526 (623)
408 COG1221 PspF Transcriptional r 98.6 1.2E-07 2.7E-12 109.6 10.2 193 408-643 75-309 (403)
409 PRK07993 DNA polymerase III su 98.6 9E-07 1.9E-11 101.7 17.1 168 416-629 7-199 (334)
410 smart00763 AAA_PrkA PrkA AAA d 98.6 5.6E-07 1.2E-11 103.0 15.2 59 776-842 52-118 (361)
411 PRK08116 hypothetical protein; 98.6 1.5E-07 3.2E-12 105.1 10.2 129 809-955 114-257 (268)
412 PRK13409 putative ATPase RIL; 98.6 2.9E-07 6.3E-12 113.5 13.8 56 858-925 461-516 (590)
413 TIGR02655 circ_KaiC circadian 98.6 7.5E-07 1.6E-11 107.6 16.9 78 805-882 259-367 (484)
414 TIGR02031 BchD-ChlD magnesium 98.6 1.7E-07 3.7E-12 115.3 11.5 135 445-605 17-174 (589)
415 PRK08769 DNA polymerase III su 98.6 1.1E-06 2.4E-11 100.1 17.0 169 416-631 9-205 (319)
416 PRK06964 DNA polymerase III su 98.6 3.2E-07 7E-12 105.3 12.7 133 442-604 19-203 (342)
417 TIGR00764 lon_rel lon-related 98.6 4.6E-07 9.9E-12 111.8 14.5 50 408-471 15-64 (608)
418 smart00763 AAA_PrkA PrkA AAA d 98.6 1.1E-06 2.4E-11 100.6 16.3 59 412-477 52-118 (361)
419 PF14532 Sigma54_activ_2: Sigm 98.6 2.7E-08 5.7E-13 99.8 2.5 107 778-923 1-110 (138)
420 PRK08116 hypothetical protein; 98.5 2.6E-07 5.6E-12 103.2 10.2 102 443-556 113-221 (268)
421 TIGR00368 Mg chelatase-related 98.5 2.8E-07 6E-12 110.9 11.1 46 409-468 190-235 (499)
422 PTZ00111 DNA replication licen 98.5 8.3E-07 1.8E-11 111.1 15.2 160 776-953 451-652 (915)
423 PRK08699 DNA polymerase III su 98.5 4.5E-07 9.7E-12 103.8 11.9 132 807-956 19-183 (325)
424 KOG2035 Replication factor C, 98.5 3.5E-06 7.6E-11 91.4 17.6 175 773-987 11-225 (351)
425 KOG2035 Replication factor C, 98.5 1.6E-06 3.6E-11 93.9 15.0 170 410-626 12-220 (351)
426 PF05621 TniB: Bacterial TniB 98.5 3.2E-06 6.9E-11 94.4 17.5 202 412-648 35-274 (302)
427 KOG1514 Origin recognition com 98.5 2.1E-06 4.5E-11 103.2 16.8 198 811-1021 424-659 (767)
428 PLN03073 ABC transporter F fam 98.5 2E-07 4.4E-12 117.0 8.8 30 438-467 197-226 (718)
429 KOG0990 Replication factor C, 98.5 5.6E-07 1.2E-11 99.5 10.8 170 410-624 40-222 (360)
430 PF01637 Arch_ATPase: Archaeal 98.5 5.9E-07 1.3E-11 96.5 10.8 178 414-627 2-227 (234)
431 KOG1514 Origin recognition com 98.5 2E-06 4.4E-11 103.2 15.5 180 445-647 423-632 (767)
432 PRK06090 DNA polymerase III su 98.5 1.9E-06 4E-11 98.2 14.5 145 415-603 7-178 (319)
433 TIGR02915 PEP_resp_reg putativ 98.5 4.8E-07 1E-11 108.1 10.0 199 410-642 138-371 (445)
434 KOG1051 Chaperone HSP104 and r 98.4 1E-06 2.2E-11 110.2 12.1 130 411-557 562-712 (898)
435 PRK08181 transposase; Validate 98.4 4.4E-07 9.5E-12 101.1 7.9 101 808-923 105-209 (269)
436 PRK11819 putative ABC transpor 98.4 3.1E-06 6.8E-11 104.2 15.7 31 438-468 27-57 (556)
437 COG1239 ChlI Mg-chelatase subu 98.4 5.9E-06 1.3E-10 95.2 16.4 160 772-960 14-234 (423)
438 PRK12377 putative replication 98.4 7.5E-07 1.6E-11 98.1 8.8 101 809-923 101-206 (248)
439 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 3.6E-06 7.9E-11 103.5 15.5 31 438-468 25-55 (552)
440 PF03215 Rad17: Rad17 cell cyc 98.4 6.6E-06 1.4E-10 99.5 17.4 200 773-996 17-269 (519)
441 COG1239 ChlI Mg-chelatase subu 98.4 3.4E-06 7.3E-11 97.1 13.9 160 409-607 15-234 (423)
442 PRK08181 transposase; Validate 98.4 4.2E-07 9.2E-12 101.2 6.4 101 443-556 105-209 (269)
443 PRK06526 transposase; Provisio 98.4 4.7E-07 1E-11 100.2 6.3 101 808-923 97-201 (254)
444 PRK08699 DNA polymerase III su 98.4 1.9E-06 4.1E-11 98.8 11.1 131 442-603 19-183 (325)
445 KOG2227 Pre-initiation complex 98.4 1.4E-05 3E-10 92.5 17.9 223 775-1018 150-416 (529)
446 PRK09302 circadian clock prote 98.4 3.5E-06 7.5E-11 102.6 14.1 78 805-882 269-377 (509)
447 COG1484 DnaC DNA replication p 98.3 1.1E-06 2.5E-11 97.2 8.9 104 808-925 104-211 (254)
448 KOG2227 Pre-initiation complex 98.3 5.7E-06 1.2E-10 95.6 14.5 194 411-634 150-367 (529)
449 PRK08939 primosomal protein Dn 98.3 1.1E-06 2.4E-11 99.8 8.7 102 808-923 155-261 (306)
450 PRK06526 transposase; Provisio 98.3 5.6E-07 1.2E-11 99.6 5.8 101 443-556 97-201 (254)
451 PRK09183 transposase/IS protei 98.3 9E-07 1.9E-11 98.4 7.5 104 441-556 99-206 (259)
452 PF01695 IstB_IS21: IstB-like 98.3 3.6E-07 7.8E-12 95.9 4.0 101 442-555 45-149 (178)
453 COG1484 DnaC DNA replication p 98.3 2.2E-06 4.7E-11 95.0 10.2 98 443-556 104-209 (254)
454 PF03215 Rad17: Rad17 cell cyc 98.3 1.2E-05 2.6E-10 97.3 17.3 59 410-475 18-76 (519)
455 PF14532 Sigma54_activ_2: Sigm 98.3 1E-06 2.3E-11 88.3 6.8 105 415-555 2-109 (138)
456 PRK06835 DNA replication prote 98.3 1.9E-06 4.1E-11 98.7 9.4 101 809-923 183-289 (329)
457 PRK07952 DNA replication prote 98.3 2E-06 4.4E-11 94.5 9.0 100 810-923 100-205 (244)
458 PRK11361 acetoacetate metaboli 98.3 7.3E-06 1.6E-10 98.3 14.5 198 411-642 143-375 (457)
459 PRK09183 transposase/IS protei 98.3 1.2E-06 2.6E-11 97.3 7.0 102 808-923 101-206 (259)
460 PRK10923 glnG nitrogen regulat 98.3 4.5E-06 9.7E-11 100.6 12.2 200 410-643 137-371 (469)
461 PRK15115 response regulator Gl 98.2 6.4E-06 1.4E-10 98.5 13.0 171 444-641 157-365 (444)
462 PF01637 Arch_ATPase: Archaeal 98.2 3.2E-06 7E-11 90.8 9.3 162 809-981 20-229 (234)
463 PRK08939 primosomal protein Dn 98.2 2.5E-06 5.3E-11 97.0 8.5 102 443-556 155-261 (306)
464 PRK06835 DNA replication prote 98.2 2.8E-06 6.1E-11 97.3 8.9 100 444-555 183-288 (329)
465 PF13173 AAA_14: AAA domain 98.2 4.9E-06 1.1E-10 82.4 9.3 70 444-515 2-73 (128)
466 PRK12377 putative replication 98.2 5.1E-06 1.1E-10 91.6 9.9 101 444-556 101-206 (248)
467 PF01695 IstB_IS21: IstB-like 98.2 6.3E-07 1.4E-11 94.0 2.6 101 808-923 46-150 (178)
468 PRK07952 DNA replication prote 98.2 4.1E-06 8.8E-11 92.1 9.1 99 445-555 100-204 (244)
469 PF13401 AAA_22: AAA domain; P 98.2 5.2E-06 1.1E-10 81.6 8.7 96 444-553 4-123 (131)
470 KOG0927 Predicted transporter 98.2 1.8E-05 3.8E-10 93.0 14.2 29 439-467 96-124 (614)
471 PRK06921 hypothetical protein; 98.2 3.3E-06 7.2E-11 94.2 8.0 104 443-555 116-224 (266)
472 PTZ00111 DNA replication licen 98.2 4.4E-06 9.6E-11 104.8 9.8 165 411-605 450-657 (915)
473 COG5245 DYN1 Dynein, heavy cha 98.2 3E-06 6.5E-11 106.5 8.0 185 434-640 1484-1713(3164)
474 COG1126 GlnQ ABC-type polar am 98.2 2.9E-06 6.3E-11 89.6 6.7 106 439-555 23-195 (240)
475 PRK06921 hypothetical protein; 98.2 4.6E-06 9.9E-11 93.1 8.7 105 808-923 116-225 (266)
476 COG1120 FepC ABC-type cobalami 98.2 3.6E-06 7.8E-11 92.5 7.5 84 858-956 146-234 (258)
477 PF12775 AAA_7: P-loop contain 98.2 3.1E-06 6.7E-11 94.7 7.0 140 443-607 32-195 (272)
478 PRK05917 DNA polymerase III su 98.1 2.5E-05 5.3E-10 87.6 13.8 121 807-945 17-154 (290)
479 PF13173 AAA_14: AAA domain 98.1 9.8E-06 2.1E-10 80.2 9.2 120 810-949 3-126 (128)
480 COG1116 TauB ABC-type nitrate/ 98.1 4.7E-06 1E-10 90.3 6.7 74 858-947 138-222 (248)
481 PRK07132 DNA polymerase III su 98.1 0.0001 2.2E-09 83.6 17.5 127 807-956 16-160 (299)
482 PRK09862 putative ATP-dependen 98.1 6.6E-06 1.4E-10 98.9 8.0 137 409-575 189-385 (506)
483 COG1126 GlnQ ABC-type polar am 98.1 6.6E-06 1.4E-10 87.0 6.9 55 857-924 143-197 (240)
484 cd01120 RecA-like_NTPases RecA 98.1 1.2E-05 2.5E-10 81.3 8.6 110 812-925 2-139 (165)
485 TIGR02237 recomb_radB DNA repa 98.1 1.6E-05 3.4E-10 85.3 9.8 116 439-554 7-148 (209)
486 PRK13406 bchD magnesium chelat 98.1 2.2E-05 4.8E-10 96.2 12.1 187 810-1017 26-250 (584)
487 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 7.8E-06 1.7E-10 89.5 7.2 55 858-925 147-201 (254)
488 PRK07276 DNA polymerase III su 98.0 9.2E-05 2E-09 83.3 16.0 128 807-955 22-172 (290)
489 PRK10365 transcriptional regul 98.0 1.1E-05 2.4E-10 96.2 9.2 172 443-641 161-370 (441)
490 cd01120 RecA-like_NTPases RecA 98.0 2.1E-05 4.5E-10 79.5 9.5 111 447-558 2-139 (165)
491 PRK05917 DNA polymerase III su 98.0 6.9E-05 1.5E-09 84.1 14.4 114 443-575 18-151 (290)
492 COG4650 RtcR Sigma54-dependent 98.0 7.6E-06 1.6E-10 89.0 6.2 193 804-1017 203-443 (531)
493 PF13401 AAA_22: AAA domain; P 98.0 1.7E-05 3.6E-10 78.0 8.2 96 809-920 4-123 (131)
494 TIGR01818 ntrC nitrogen regula 98.0 2.6E-05 5.6E-10 93.8 11.4 198 412-643 135-367 (463)
495 PLN03210 Resistant to P. syrin 98.0 5.4E-05 1.2E-09 100.8 15.3 177 770-980 179-389 (1153)
496 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00017 3.7E-09 85.0 16.7 206 411-642 82-319 (634)
497 PRK13765 ATP-dependent proteas 98.0 0.00013 2.8E-09 90.3 16.7 49 408-470 28-76 (637)
498 KOG0062 ATPase component of AB 98.0 0.0002 4.3E-09 84.0 17.1 112 799-926 378-542 (582)
499 PRK05818 DNA polymerase III su 98.0 0.00014 3E-09 80.1 15.1 121 807-945 5-147 (261)
500 cd03214 ABC_Iron-Siderophores_ 98.0 1.6E-05 3.5E-10 83.4 7.6 112 438-559 19-161 (180)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-111 Score=954.46 Aligned_cols=683 Identities=44% Similarity=0.641 Sum_probs=556.9
Q ss_pred ccCCCCCCCCCCCCcccccCCCCCccccccccccCcCCCcccchhhhhhhccHhHHHHHHHHHHhhhcCCeecCCCEEEE
Q 001395 246 DSSPKTPMYQPRLSSQSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCGNLVAV 325 (1086)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 325 (1086)
.+++|+ +..++.+| .++-+|+.+|++.--.+ ..-++.++..|+.+++|++.|.++.
T Consensus 85 kst~~~--~~~~~~s~--~~~~~~~~~ds~~e~~~------~k~~~~e~~sn~~~kkl~s~~~~r~-------------- 140 (802)
T KOG0733|consen 85 KSTLKD--NLQKFASP--KVSKSPIIEDSVAERQS------EKNDIIEVDSNEANKKLLSLWAKRA-------------- 140 (802)
T ss_pred cccchh--hHHHhcCC--ccccCccccchHHHHhc------ccCcceeecchHHHHHHHHHHHhhc--------------
Confidence 455555 33444433 45667777776541111 1127789999999999999887211
Q ss_pred eecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEcCCchhcccccCCCCCChhhhhhhhhhcc
Q 001395 326 PMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQAT 405 (1086)
Q Consensus 326 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1086)
++. .++....+..+.+.+.|++.++............ . ......
T Consensus 141 --------------~~~-------------~~d~~~k~~~~~~~~~~k~~l~~~~a~~~~r~~~--------~-~~~~~~ 184 (802)
T KOG0733|consen 141 --------------EKR-------------TEDSKPKNHAEMIVPGTKVSLHLSLARGILRQFV--------E-GLEFPE 184 (802)
T ss_pred --------------ccC-------------CccccccccccccCcchhhhhhhhhcchhhhhhh--------c-ccCCCC
Confidence 010 1112223456778888888876432111000000 0 000011
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...+|.+|||++++..+|.+++...+.++.|..+|+.|++|||||||||||||+||+++|++++++|+.|++.++++.+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 13468999999999999999999887889999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccC----CCeeEEeccCCCCCCCc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT----DGVLVIAATNRPDSIEP 561 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~----~~viVIatTN~~d~idp 561 (1086)
|++|++++++|++|....|||+||||||+|.|+|...+.++++|++.+|++.||++... ..|+||++||+||.+||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 99999999999999999999999999999999999999999999999999999998655 57999999999999999
Q ss_pred cccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 562 aL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
+|||+||||++|.+ ++|++.+|.+||+.+++++.+.. +.+++.||+.|+||+|+||.+||.+|++
T Consensus 345 aLRRaGRFdrEI~l--------------~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa~ 409 (802)
T KOG0733|consen 345 ALRRAGRFDREICL--------------GVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAAF 409 (802)
T ss_pred HHhccccccceeee--------------cCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHHH
Confidence 99999999999999 99999999999999999988774 7889999999999999999999999999
Q ss_pred HHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCccccccCCcccccchHHHHh
Q 001395 642 VCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIAD 721 (1086)
Q Consensus 642 ~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 721 (1086)
.|++|..+..... ....-..++....+.+. +...+....-.. ..+.++..+.+...
T Consensus 410 vAikR~ld~~~~p-----~~~~~~~ed~~~~~~~~------------d~S~i~~~~~~~-------~~~~ld~v~~~~i~ 465 (802)
T KOG0733|consen 410 VAIKRILDQSSSP-----LTKVPISEDSSNKDAEE------------DQSSIKITSNAE-------RPLELDRVVQDAIL 465 (802)
T ss_pred HHHHHHhhcccCc-----cccCCccccccCCCccc------------hhhhhhcCCccc-------ccccHHHHHHHHHH
Confidence 9999976543320 00000000100000000 000000000000 11112222222222
Q ss_pred hccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHH
Q 001395 722 NFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 801 (1086)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~ 801 (1086)
+.++. ...+..+.+.+..+||..|+..++|++.||.+..+|+|+|+||+++++++.+|..+|.||.++++.|
T Consensus 466 ~~~d~--------~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~ 537 (802)
T KOG0733|consen 466 NNPDP--------LSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLF 537 (802)
T ss_pred hCCCC--------cChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHH
Confidence 22221 1246667788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhh
Q 001395 802 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLA 881 (1086)
Q Consensus 802 ~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~ 881 (1086)
+++|+..|.|+|||||||||||+||||+|++.+++||.|++++|+++|||++++++|.+|.+||..+||||||||+|+|+
T Consensus 538 k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~ 617 (802)
T KOG0733|consen 538 KALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALV 617 (802)
T ss_pred HHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHh--
Q 001395 882 AIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR-- 959 (1086)
Q Consensus 882 ~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~-- 959 (1086)
+.|+... .....|++||||++|||++.+.+|.||+||||||.||||++||||||+.+|+++|+.++|.+||+.+++
T Consensus 618 p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~ 695 (802)
T KOG0733|consen 618 PRRSDEG--SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT 695 (802)
T ss_pred cccCCCC--chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccC
Confidence 9998766 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHhcCC--------------CCCCHHHHHHHHHhhCCCchh
Q 001395 960 KIPCSSDVNIRELACLSE--GCTGADISLICREAAISAIEENLDA--------------SRITMQHLKTAIRHVQPSEIH 1023 (1086)
Q Consensus 960 ~~~l~~d~~l~~La~~t~--g~sgadl~~l~~~A~~~A~~~~~~~--------------~~It~~d~~~al~~~~p~~~~ 1023 (1086)
+.++..|+|++++|+.+. ||||+||..+|++|.+.|+++.+.. ..+++.||++|+++++|+..+
T Consensus 696 k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~ 775 (802)
T KOG0733|consen 696 KPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSE 775 (802)
T ss_pred CCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccH
Confidence 889999999999999877 9999999999999999999986521 247888999999999999777
Q ss_pred HHHHHHHHHHHHHh
Q 001395 1024 SYKELSAKFQRLVH 1037 (1086)
Q Consensus 1024 ~~~~~~~~~~~~~~ 1037 (1086)
.-++.++.+.+.+-
T Consensus 776 ~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 776 RDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHHHHHhhhhc
Confidence 66666666666543
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-95 Score=842.70 Aligned_cols=501 Identities=51% Similarity=0.901 Sum_probs=477.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhH
Q 001395 411 SKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE 489 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese 489 (1086)
.+++|+..+...++++++++.. +..+..+|+++++++|+|||||||||.+++++|++.+++++.++++++++++.|+++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 5899999999999999999943 578888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC-CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCC
Q 001395 490 QALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGR 568 (1086)
Q Consensus 490 ~~l~~vf~~a~~~~-P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GR 568 (1086)
+.++.+|+.|...+ |+||||||+|.++|+|..... ...|+..+|+.+||++...++++||++||+++.||+++|| ||
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gR 341 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GR 341 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CC
Confidence 99999999999999 999999999999999876555 7899999999999999988999999999999999999999 99
Q ss_pred cceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 569 LDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 648 (1086)
Q Consensus 569 fdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~ 648 (1086)
||++++| +.|+..+|.+|++.++++++.. ++.++..+|..||||+|+|+.++|++|++.++++
T Consensus 342 fd~ev~I--------------giP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-- 404 (693)
T KOG0730|consen 342 FDREVEI--------------GIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR-- 404 (693)
T ss_pred Ccceeee--------------cCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--
Confidence 9999999 9999999999999999999877 7899999999999999999999999999887654
Q ss_pred cccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCccccccCCcccccchHHHHhhccCCCC
Q 001395 649 KIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVS 728 (1086)
Q Consensus 649 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~ 728 (1086)
T Consensus 405 -------------------------------------------------------------------------------- 404 (693)
T KOG0730|consen 405 -------------------------------------------------------------------------------- 404 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCC
Q 001395 729 DSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP 808 (1086)
Q Consensus 729 ~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~ 808 (1086)
++++|..|+..++|+++|+..++.|+++|+||+|++++|++|++.|+||++|++.|.++|+.+
T Consensus 405 -----------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~p 467 (693)
T KOG0730|consen 405 -----------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISP 467 (693)
T ss_pred -----------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCC
Confidence 345788889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES 888 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~ 888 (1086)
|+|||||||||||||++|||+|++++++|+.+++++++++|+|++|+.++++|++|++.+||||||||||+++..|+...
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~ 547 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS 547 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997443
Q ss_pred CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCccc
Q 001395 889 DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN 968 (1086)
Q Consensus 889 ~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~ 968 (1086)
. ++.+|++++||++|||++...+|+||+|||||+.||+|++||||||++|||++||.+.|.+||+.+++++++..++|
T Consensus 548 ~--~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vd 625 (693)
T KOG0730|consen 548 S--GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVD 625 (693)
T ss_pred c--chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcccc
Confidence 3 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCc----hhHHHHHH
Q 001395 969 IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSE----IHSYKELS 1029 (1086)
Q Consensus 969 l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~~----~~~~~~~~ 1029 (1086)
+++||+.|+||||+||.++|++|++.|+++.++...|+.+||++|++.++++. .+.|+++.
T Consensus 626 l~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 626 LEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999884 44454443
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-79 Score=766.19 Aligned_cols=601 Identities=47% Similarity=0.804 Sum_probs=529.5
Q ss_pred HHHHHhhhcCCeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEcCCchhcc
Q 001395 305 QTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVS 384 (1086)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~ 384 (1086)
...++.++.++++..|+.|.+.+.+....|.|+.+.|. +.+.++..|.+.+.......
T Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~---------------------~~~~~~~~t~~~~~~~~~~~- 166 (733)
T TIGR01243 109 VDYVKEFLLGKPISKGETVIVPVLEGALPFVVVSTQPA---------------------GFVYVTEATEVEIREKPVRE- 166 (733)
T ss_pred HHHHHHHHcCCCCCCCCEEEecccCcceeEEEEecCCC---------------------CcEEECCCceEEecCCcccc-
Confidence 35568889999999999999999988899999888775 56778888988864321100
Q ss_pred cccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHH
Q 001395 385 KSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARL 463 (1086)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAra 463 (1086)
.. ........|++|+|++.+++.|++++..+. .++.+..+|+.+++++|||||||||||++|++
T Consensus 167 -----~~----------~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 167 -----EI----------ERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred -----cc----------ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHH
Confidence 00 001123457899999999999999998873 35888999999999999999999999999999
Q ss_pred HHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc
Q 001395 464 CAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 543 (1086)
Q Consensus 464 lA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~ 543 (1086)
+|++++.+++.++++++.+++.|+++..++.+|+.+....|+||||||+|.+++++.....+...+++.+|+++|+++..
T Consensus 232 ia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 232 VANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred HHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999988776677788999999999999988
Q ss_pred CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHH
Q 001395 544 TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA 623 (1086)
Q Consensus 544 ~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~ 623 (1086)
.+.++||++||+++.+|++++|+|||++++++ +.|+.++|.+||+.+.+.+.+. .+.+++.++..
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i--------------~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~ 376 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVI--------------RVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEV 376 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEe--------------CCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHh
Confidence 88999999999999999999999999999999 9999999999999998876643 46678999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCcc
Q 001395 624 THGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPT 703 (1086)
Q Consensus 624 t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1086)
++||+++|+..+|++|++.+++|....... ++..
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~~~~~~~-------------------~~~~--------------------------- 410 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRFIREGKI-------------------NFEA--------------------------- 410 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcccc-------------------cccc---------------------------
Confidence 999999999999999999999885432100 0000
Q ss_pred ccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhH
Q 001395 704 SLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREV 783 (1086)
Q Consensus 704 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~v 783 (1086)
+.+ ..+......++.+||..|+..++|+.+++...+.|+++|+|++|++.+
T Consensus 411 -----------------~~i------------~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~ 461 (733)
T TIGR01243 411 -----------------EEI------------PAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEV 461 (733)
T ss_pred -----------------ccc------------cchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHH
Confidence 000 001123356889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHH
Q 001395 784 KTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAK 863 (1086)
Q Consensus 784 k~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~ 863 (1086)
|+.|++.+.|++.+++.++++|..+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..
T Consensus 462 k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~ 541 (733)
T TIGR01243 462 KQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRK 541 (733)
T ss_pred HHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecC
Q 001395 864 ARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 943 (1086)
Q Consensus 864 A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~ 943 (1086)
|+...||||||||||+|++.|+.... ....++++++||.+||++....+++||+|||+|+.||+|++||||||++|+|+
T Consensus 542 A~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~ 620 (733)
T TIGR01243 542 ARQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVP 620 (733)
T ss_pred HHhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeC
Confidence 99999999999999999998865433 34678999999999999988889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC----------------CCCCCH
Q 001395 944 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD----------------ASRITM 1007 (1086)
Q Consensus 944 ~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~----------------~~~It~ 1007 (1086)
+|+.++|.+||+.++++.++..+++++.||+.|+||+|+||.++|++|++.|+++... ...|++
T Consensus 621 ~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 700 (733)
T TIGR01243 621 PPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEM 700 (733)
T ss_pred CcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccH
Confidence 9999999999999999999999999999999999999999999999999999986431 136999
Q ss_pred HHHHHHHHhhCCC----chhHHHHHHHHHH
Q 001395 1008 QHLKTAIRHVQPS----EIHSYKELSAKFQ 1033 (1086)
Q Consensus 1008 ~d~~~al~~~~p~----~~~~~~~~~~~~~ 1033 (1086)
+||.+|+++++|+ +...|++|.+.|.
T Consensus 701 ~~f~~al~~~~ps~~~~~~~~~~~~~~~~~ 730 (733)
T TIGR01243 701 RHFLEALKKVKPSVSKEDMLRYERLAKELK 730 (733)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999998 3457888877764
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-77 Score=692.34 Aligned_cols=603 Identities=34% Similarity=0.559 Sum_probs=487.2
Q ss_pred HHHHHHHHHhhhc-CCeecCCCEEEEeecCc------------------eeEEEEEeecCCCcccccCCCCccccccccC
Q 001395 301 IKLLQTCAASWLY-SRSLLCGNLVAVPMLSE------------------ISIFLVIGANKLPADLTNERSQPQVTESMDH 361 (1086)
Q Consensus 301 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1086)
..++.+.+++++. .|.+..||++.|++.+. .+.|.|.+++|.
T Consensus 303 ~~~~~~~l~~~f~t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~------------------- 363 (953)
T KOG0736|consen 303 AGNIDVVLKKHFKTPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPG------------------- 363 (953)
T ss_pred hhHHHHHHHHHhCcceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCC-------------------
Confidence 4556666666664 69999999999998765 355666666664
Q ss_pred CCCcEEEcCC-ceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcC
Q 001395 362 ESNAFVINHE-TKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLG 440 (1086)
Q Consensus 362 ~~~~~~i~~~-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lg 440 (1086)
.+-.++|+++ |++++.+..+.. ++ .-.++.. .+..+-...+.+..+-.+..++...+.+.. .+
T Consensus 364 ~~~~~~i~~~~T~lv~~~~~ss~---~~-~lps~~~---------~l~n~~~~~~~~~~~~~l~~vl~p~~~~s~---~~ 427 (953)
T KOG0736|consen 364 NESAYIIDTNHTSLVLVGATSSR---VP-LLPSSLS---------TLWNSLSPPGLEAKVLELVAVLSPQKQPSG---AL 427 (953)
T ss_pred ccceEEEcCCCceEEEccccccC---Cc-CCChhhH---------HHhccCCCccchHHHHHHHHHhCcccCcch---hc
Confidence 1135777776 999987765432 11 1111111 112222344566666666666666533332 34
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCC
Q 001395 441 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 520 (1086)
Q Consensus 441 i~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~ 520 (1086)
+.-...+||+|+||||||++++++|.++|.|+++++|.++.+...+.++.++..+|+.|+...|+|||+-++|.+...++
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999985554
Q ss_pred CCCchhHHHHHHHHHHHhh---ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHH
Q 001395 521 DGGEELSQRMVATLLNLMD---GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQR 597 (1086)
Q Consensus 521 ~~~~~~~~rv~~~Ll~lLd---~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR 597 (1086)
++ .+.++...+..+|. ......+++||++|+..+.+++.+++ -|-.+|.+ +.|+++||
T Consensus 508 gg---ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~--------------~~lse~qR 568 (953)
T KOG0736|consen 508 GG---EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEV--------------PALSEEQR 568 (953)
T ss_pred Cc---hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccC--------------CCCCHHHH
Confidence 42 24455554444443 22356789999999999999999998 67678888 99999999
Q ss_pred HHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCcccccccc
Q 001395 598 LEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDS 677 (1086)
Q Consensus 598 ~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 677 (1086)
.+||++++...... .++.++.++.+|.||+.+|+.+++..+...+..|........... +.
T Consensus 569 l~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~------------~~------ 629 (953)
T KOG0736|consen 569 LEILQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQ------------EE------ 629 (953)
T ss_pred HHHHHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccch------------hc------
Confidence 99999999876644 678899999999999999999999887655555533221000000 00
Q ss_pred ccccccccccccccccCCCCCCCCccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhh
Q 001395 678 DCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKV 757 (1086)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~ 757 (1086)
. +. . -......++++||.+++.+.
T Consensus 630 -------------------------------~-----------~~-----------~---~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 630 -------------------------------D-----------EG-----------E---LCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred -------------------------------c-----------cc-----------c---cccccceecHHHHHHHHHHH
Confidence 0 00 0 01112678999999999877
Q ss_pred Cchhhhhh-hhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc
Q 001395 758 RPSAMREV-ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 836 (1086)
Q Consensus 758 ~ps~~re~-~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~ 836 (1086)
+......+ ...+|+|+|+||||++++|.+|.+.|..|++|+++|.. |++...|||||||||||||++|||+|+++..+
T Consensus 654 ~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 654 QKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred HHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceee
Confidence 75433322 24689999999999999999999999999999999974 88889999999999999999999999999999
Q ss_pred EEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--cCCCE
Q 001395 837 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNV 914 (1086)
Q Consensus 837 fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~~~~v 914 (1086)
|++|+++||+++|+|++|+++|++|++||.++||||||||+|+|+++||..++++++.+|+++|||.+||++. ...+|
T Consensus 733 FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 733 FLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred EEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 46789
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEeecCCCCH-HHHHHHHHHHHhcCCCCCcccHHHHHHHcC-CCcHHHHHHHHHHHH
Q 001395 915 TVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE-TDREEIFRIHLRKIPCSSDVNIRELACLSE-GCTGADISLICREAA 992 (1086)
Q Consensus 915 ~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~-~eR~~Il~~~l~~~~l~~d~~l~~La~~t~-g~sgadl~~l~~~A~ 992 (1086)
+||+||||||.|||||+||||||+.+|+++++. +.+..+|+...+++.++.++++.++|+.+. .|||||+.++|.+|+
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAM 892 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHH
Confidence 999999999999999999999999999998875 457889999999999999999999999887 899999999999999
Q ss_pred HHHHHHhcC---------------CCCCCHHHHHHHHHhhCCC----chhHHHHHHHHHH
Q 001395 993 ISAIEENLD---------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 1033 (1086)
Q Consensus 993 ~~A~~~~~~---------------~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~~ 1033 (1086)
+.|+++.+. .-.|+++||.+++++++|+ +.+.|+.++.+|+
T Consensus 893 l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 999988642 1248999999999999998 5678888877764
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-66 Score=593.44 Aligned_cols=453 Identities=36% Similarity=0.588 Sum_probs=404.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
....+|||+||+|||||.|++++++++ -+++..++|+.+-........+.+..+|..+..++|+||++|++|.|+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 345679999999999999999999876 4578899999998777777778899999999999999999999999997
Q ss_pred CCCCCC---chhHHHHHHHHHHHhhccccC-CCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCC
Q 001395 518 ARKDGG---EELSQRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPS 593 (1086)
Q Consensus 518 ~r~~~~---~~~~~rv~~~Ll~lLd~l~~~-~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd 593 (1086)
..+..+ +....++...|.+.++.+... ..+.||++.+....++|.|-+|++|+.++.+ +.|+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L--------------~ap~ 574 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL--------------PAPA 574 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec--------------CCcc
Confidence 333222 234555555555666555444 4469999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCcccc
Q 001395 594 PAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTM 673 (1086)
Q Consensus 594 ~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~ 673 (1086)
..+|.+||...+.+........+++.++..|+||...|+..++.+|...|+.....
T Consensus 575 ~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------------------------ 630 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------------------------ 630 (952)
T ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc------------------------
Confidence 99999999999988765556667777999999999999999999998888632100
Q ss_pred ccccccccccccccccccccCCCCCCCCccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHH
Q 001395 674 LQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKA 753 (1086)
Q Consensus 674 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~A 753 (1086)
.... .++.++|.++
T Consensus 631 -----------------------------------------------------------------~~~k-lltke~f~ks 644 (952)
T KOG0735|consen 631 -----------------------------------------------------------------NGPK-LLTKELFEKS 644 (952)
T ss_pred -----------------------------------------------------------------cCcc-cchHHHHHHH
Confidence 0111 5788999999
Q ss_pred HHhhCchhhhhhhhhcCC-ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH
Q 001395 754 RMKVRPSAMREVILEVPK-VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE 832 (1086)
Q Consensus 754 l~~~~ps~~re~~~e~p~-v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~ 832 (1086)
++...|.++|.+-...+. ..|+||+|+.++|+.|++.++||.+|+..|...+++.+.|+|||||||||||+||.++|..
T Consensus 645 L~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~ 724 (952)
T KOG0735|consen 645 LKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN 724 (952)
T ss_pred HHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh
Confidence 999999999988765544 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCC
Q 001395 833 AGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 912 (1086)
Q Consensus 833 ~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~ 912 (1086)
++..||.+++++++++|+|.+++++|.+|.+|+..+||||||||+|+++++||.++. ++++|++||||++|||.+...
T Consensus 725 ~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT--GVTDRVVNQlLTelDG~Egl~ 802 (952)
T KOG0735|consen 725 SNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST--GVTDRVVNQLLTELDGAEGLD 802 (952)
T ss_pred CCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC--CchHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999999999999999999987655 789999999999999999999
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
+|.|++||.||++|||||+||||+|+.++.+.|+..+|.+|++.......+..++|++.+|..|+||+|+||..++-.|.
T Consensus 803 GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~ 882 (952)
T KOG0735|consen 803 GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQ 882 (952)
T ss_pred eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 001395 993 ISAIEENL 1000 (1086)
Q Consensus 993 ~~A~~~~~ 1000 (1086)
+.|+.+.+
T Consensus 883 l~avh~~l 890 (952)
T KOG0735|consen 883 LAAVHEIL 890 (952)
T ss_pred HHHHHHHH
Confidence 99988764
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-61 Score=580.26 Aligned_cols=485 Identities=51% Similarity=0.805 Sum_probs=443.7
Q ss_pred hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEcc
Q 001395 432 VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDE 511 (1086)
Q Consensus 432 ~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDE 511 (1086)
.++.++.+++.++++++++||||||||++++++|.. +..++.++++++.+++.|+++..++.+|+.+....|+++++||
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 346778899999999999999999999999999999 7777889999999999999999999999999999999999999
Q ss_pred chhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCC
Q 001395 512 LDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAV 591 (1086)
Q Consensus 512 iD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~ 591 (1086)
+|.+++.+.........+++.+++..|+++. .+.+++++.+|++..++++++++|||++++.+ +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~ 149 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEV--------------NL 149 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeec--------------CC
Confidence 9999998887666778999999999999998 55588899999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCcc
Q 001395 592 PSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSD 671 (1086)
Q Consensus 592 Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~ 671 (1086)
|+...+.+|++.+...+... .+..++.++..++||.++++..+++++.+.+.+|...
T Consensus 150 ~~~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~---------------------- 206 (494)
T COG0464 150 PDEAGRLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID---------------------- 206 (494)
T ss_pred CCHHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc----------------------
Confidence 99999999999998877654 3678899999999999999999999999888776320
Q ss_pred ccccccccccccccccccccccCCCCCCCCccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHH
Q 001395 672 TMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFE 751 (1086)
Q Consensus 672 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~ 751 (1086)
.......++.+|+.
T Consensus 207 ------------------------------------------------------------------~~~~~~~~~~~~~~ 220 (494)
T COG0464 207 ------------------------------------------------------------------LVGEYIGVTEDDFE 220 (494)
T ss_pred ------------------------------------------------------------------cCcccccccHHHHH
Confidence 01123567788999
Q ss_pred HHHHhhCchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHH
Q 001395 752 KARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS 831 (1086)
Q Consensus 752 ~Al~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~ 831 (1086)
.++..+.|+ +++..+.+.++|++++|++.+|+.+++.+.+++.+++.|...++++++|+|||||||||||++|+++|+
T Consensus 221 ~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 221 EALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 999999988 777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccC
Q 001395 832 EAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 911 (1086)
Q Consensus 832 ~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~ 911 (1086)
+++.+|+.+++++++++|+|+++++++.+|..|+..+||||||||+|++++.|+...++ ...+++++|+.+|++....
T Consensus 299 ~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 299 ESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred hCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999998765432 2379999999999999999
Q ss_pred CCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC--CCCcccHHHHHHHcCCCcHHHHHHHHH
Q 001395 912 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP--CSSDVNIRELACLSEGCTGADISLICR 989 (1086)
Q Consensus 912 ~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~--l~~d~~l~~La~~t~g~sgadl~~l~~ 989 (1086)
.+|+||+|||+|+.+|+|++||||||++++|++|+..+|.+||+.++++.. +..++++..+++.++||+|+||..+|+
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999544 468899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchhHHHHH
Q 001395 990 EAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKEL 1028 (1086)
Q Consensus 990 ~A~~~A~~~~~~~~~It~~d~~~al~~~~p~~~~~~~~~ 1028 (1086)
+|++.++++.. ...|+++||.+|++.++|+.. |++|
T Consensus 457 ea~~~~~~~~~-~~~~~~~~~~~a~~~~~p~~~--~~~~ 492 (494)
T COG0464 457 EAALEALREAR-RREVTLDDFLDALKKIKPSVT--YEEW 492 (494)
T ss_pred HHHHHHHHHhc-cCCccHHHHHHHHHhcCCCCC--hhhc
Confidence 99999999875 557999999999999999855 5444
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-54 Score=472.30 Aligned_cols=252 Identities=46% Similarity=0.761 Sum_probs=238.6
Q ss_pred hhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc
Q 001395 766 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 845 (1086)
Q Consensus 766 ~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel 845 (1086)
..+.|+++++||+|+++.+++|+|.++.|+++|+.|+.+|+.||+|||||||||||||+||||+|++.++.||.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 846 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
+.+|+|+..+-+|++|+.|+..+||||||||||+++.+|.+.+.+ ...-.|.+-+||++|||+.+.++|-||+||||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999999766543 2334566678899999999999999999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 1004 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~ 1004 (1086)
.|||||+|||||||.|+||+|+.+.|.+||++|.+++.+..++|++.||+.++|+|||||+++|.+|.+.|+|+. ...
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~--R~~ 379 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER--RDE 379 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--cCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 668
Q ss_pred CCHHHHHHHHHhhCC
Q 001395 1005 ITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 1005 It~~d~~~al~~~~p 1019 (1086)
||++||.+|..++..
T Consensus 380 Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 380 VTMEDFLKAVEKVVK 394 (406)
T ss_pred ecHHHHHHHHHHHHh
Confidence 999999999988643
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-49 Score=434.45 Aligned_cols=263 Identities=36% Similarity=0.592 Sum_probs=231.7
Q ss_pred EcCCceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCe
Q 001395 368 INHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKG 446 (1086)
Q Consensus 368 i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~ 446 (1086)
+-|...|.+...++.....++....|....+-. ...+..++++||||++++++|+|.|++|.. ++.|+.+|+.||+|
T Consensus 110 L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v--~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKG 187 (406)
T COG1222 110 LEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEV--EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKG 187 (406)
T ss_pred cCCCCEEEEcCCcceeeeeCCCccCchhheeee--ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCc
Confidence 344566666666555555555544444333322 223344568999999999999999999943 69999999999999
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---C
Q 001395 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---G 523 (1086)
Q Consensus 447 vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~ 523 (1086)
||||||||||||+||||+|++.++.|+.+.+++++.+|+|+..+.++++|+.|+.+.||||||||||+++.+|.+. +
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~g 267 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSG 267 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988543 4
Q ss_pred chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 524 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
+..-+|++-+|++.||++...++|-||+|||++|.+||||+|||||||.|+| |.|+.+.|.+||++
T Consensus 268 DrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEf--------------plPd~~gR~~Il~I 333 (406)
T COG1222 268 DREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEF--------------PLPDEEGRAEILKI 333 (406)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeec--------------CCCCHHHHHHHHHH
Confidence 4566888899999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 604 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 647 (1086)
Q Consensus 604 ~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~ 647 (1086)
|.++|.+. .+.+++.|++.|+|++|+||.++|.||+|.|+|+.
T Consensus 334 HtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 334 HTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred HhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 99999876 78999999999999999999999999999999863
No 9
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-46 Score=419.52 Aligned_cols=539 Identities=24% Similarity=0.333 Sum_probs=375.5
Q ss_pred HHHHHHHHhhhcCCeecCCCEEEEeecC-ceeEEEEEeecCCCc-ccccCCCCccccccccCCCCcEEEcCCceEEEcCC
Q 001395 302 KLLQTCAASWLYSRSLLCGNLVAVPMLS-EISIFLVIGANKLPA-DLTNERSQPQVTESMDHESNAFVINHETKVYLYPP 379 (1086)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~ 379 (1086)
+.+-+..++...+.++.+|+.+...|-| ..+.+.|.+++.-.. ... .+..+.....-..-++..+|.|.+...
T Consensus 117 d~ma~qF~~~y~~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D~~~~~-----~~~a~~~~~~~~~G~l~~nT~i~F~k~ 191 (744)
T KOG0741|consen 117 DEMAKQFKRQYNSQAFSVGQQLVFEFNGNKLLGLKVKDIEAFDPGISE-----GESAVTKRQKIERGLLLGNTQIVFEKA 191 (744)
T ss_pred HHHHHHHHHHhcCcccCCccEEEEEecCceEeeeEEEEEeeecccccc-----CCcccccccceeeeEeecCcEEEEEec
Confidence 5566777889999999999999999997 677888877654211 110 000000000112234556677755444
Q ss_pred chhcccccCC-CCCChhhhhhhhhhccccccccccCCcHHHHHHH-HHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCCh
Q 001395 380 LNAVSKSLRE-GTLPNAQIEFQNVQATVEQDISKLGGLSKEYAIL-KDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTG 456 (1086)
Q Consensus 380 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l-~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTG 456 (1086)
.++...-.-. ...+..+.... +...... -.||||+.+...| +.+.....+ ++..+++|++.-+|+|||||||||
T Consensus 192 ~~s~lnL~~~~~~k~~~n~ii~--Pdf~Fe~-mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTG 268 (744)
T KOG0741|consen 192 ENSSLNLIGKSKTKPASNSIIN--PDFNFES-MGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTG 268 (744)
T ss_pred cCcceEeeccccccchhccccC--CCCChhh-cccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCC
Confidence 3322110000 01111111110 0011111 3689999988877 344433323 578899999999999999999999
Q ss_pred HHHHHHHHHHHcCC-cEEEEcccccccccchhhHHHHHHHHHHhhcC--------CCeEEEEccchhhccCCCCC--Cch
Q 001395 457 KTSLARLCAHDSGV-NLFTVNGPEVVSQNYGESEQALHEVFDSASQS--------APAVVFIDELDAIAPARKDG--GEE 525 (1086)
Q Consensus 457 KTtLAralA~~lg~-~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~--------~P~ILfIDEiD~l~~~r~~~--~~~ 525 (1086)
||.+||.|.+.+++ +--.+||+++.++|+|++|..++.+|..|... .--||++||||++|.+|+.. +..
T Consensus 269 KTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TG 348 (744)
T KOG0741|consen 269 KTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTG 348 (744)
T ss_pred hhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCC
Confidence 99999999999976 44668999999999999999999999987542 22499999999999988653 356
Q ss_pred hHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHH
Q 001395 526 LSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALL 605 (1086)
Q Consensus 526 ~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l 605 (1086)
....+++|||.-||+...-++++||+.|||.|.||.||+|||||+-..+| ..||+..|++||++|+
T Consensus 349 VhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI--------------sLPDE~gRlQIl~IHT 414 (744)
T KOG0741|consen 349 VHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI--------------SLPDEKGRLQILKIHT 414 (744)
T ss_pred ccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE--------------eCCCccCceEEEEhhh
Confidence 78899999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred ccCcc---ccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccc
Q 001395 606 SGMEH---SLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRN 682 (1086)
Q Consensus 606 ~~~~~---~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 682 (1086)
+.|.- .-.++++++||..|..|+|++|+.|++.|...|+.|....... .
T Consensus 415 ~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~-~--------------------------- 466 (744)
T KOG0741|consen 415 KRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGK-V--------------------------- 466 (744)
T ss_pred hhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcc-e---------------------------
Confidence 88752 2468899999999999999999999999999999886542100 0
Q ss_pred cccccccccccCCCCCCCCccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhh
Q 001395 683 ITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAM 762 (1086)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~ 762 (1086)
....+..+.++++++||..|+..++|+--
T Consensus 467 ---------------------------------------------------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG 495 (744)
T KOG0741|consen 467 ---------------------------------------------------EVDPVAIENLKVTRGDFLNALEDVKPAFG 495 (744)
T ss_pred ---------------------------------------------------ecCchhhhheeecHHHHHHHHHhcCcccC
Confidence 00113455689999999999999998532
Q ss_pred h---h--hhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcE
Q 001395 763 R---E--VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF 837 (1086)
Q Consensus 763 r---e--~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f 837 (1086)
. + ..+..--+.|..-+ .+.++.....-+..+.....+-..+||.||||+|||+||.-+|..++.||
T Consensus 496 ~see~l~~~~~~Gmi~~g~~v---------~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPF 566 (744)
T KOG0741|consen 496 ISEEDLERFVMNGMINWGPPV---------TRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPF 566 (744)
T ss_pred CCHHHHHHHHhCCceeecccH---------HHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCe
Confidence 1 1 01111223443321 11111111111111222334455699999999999999999999999999
Q ss_pred EEEeCCc-cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCC-EE
Q 001395 838 LAVKGPE-LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN-VT 915 (1086)
Q Consensus 838 i~v~~se-l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~-v~ 915 (1086)
+.+-.++ +++..-.+....++.+|+.|....-+||++|+|+.|..- ..-+...+..++..|+..|....+.++ .+
T Consensus 567 vKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~---vpIGPRfSN~vlQaL~VllK~~ppkg~kLl 643 (744)
T KOG0741|consen 567 VKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY---VPIGPRFSNLVLQALLVLLKKQPPKGRKLL 643 (744)
T ss_pred EEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc---cccCchhhHHHHHHHHHHhccCCCCCceEE
Confidence 9977665 332211122346899999999999999999999998643 222335667778888888877766554 55
Q ss_pred EEEecCCCCCCC-hhhhCCCCcceEeecCCCCH-HHHHHHHH
Q 001395 916 VIAATNRPDKID-PALLRPGRFDRLLYVGPPNE-TDREEIFR 955 (1086)
Q Consensus 916 VI~aTN~p~~lD-~aLlrpgRFd~~I~~~~P~~-~eR~~Il~ 955 (1086)
|++||.+.+.+. -.++. .|+..+++|..+. ++..+++.
T Consensus 644 i~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 644 IFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred EEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 666666554332 23444 7888999886655 44455443
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-45 Score=402.19 Aligned_cols=266 Identities=44% Similarity=0.715 Sum_probs=246.7
Q ss_pred hhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeC
Q 001395 763 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 842 (1086)
Q Consensus 763 re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~ 842 (1086)
+.++...|++.|+||.|+.++|+.|+|+|..|+..|+.|+.+ .+|.+|||++||||||||+||||+|.+++..|+.|+.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 455667899999999999999999999999999999999974 6788999999999999999999999999999999999
Q ss_pred CccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccC-CC---EEEEE
Q 001395 843 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR-VN---VTVIA 918 (1086)
Q Consensus 843 sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~-~~---v~VI~ 918 (1086)
+.+.++|.|++++.+|.+|+.|+..+|++|||||||+|+..||..+. .+.++|+.++||..|||+... .+ |+|++
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E-HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE-HEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc-hhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 99999999999999999999999999999999999999999987743 478999999999999998542 23 89999
Q ss_pred ecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 919 ATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 998 (1086)
Q Consensus 919 aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~ 998 (1086)
|||.|+.||+||+| ||.+.||+|+|+.+.|..+++..++..+...+++++.||+.++||||+||.++|++|.+.++|+
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcC---------------CCCCCHHHHHHHHHhhCCC----chhHHHHHHHHH
Q 001395 999 NLD---------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 1032 (1086)
Q Consensus 999 ~~~---------------~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~ 1032 (1086)
.+. ..+|+..||++|+.+++|+ ....|++|...|
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 642 1469999999999999998 567888888766
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-45 Score=418.13 Aligned_cols=289 Identities=40% Similarity=0.664 Sum_probs=263.6
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
.+++.|.||+|++....+|.+.+.. +++|+.|..+|+.||+|+|||||||||||+||+|||++++.||+.|+++++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 4578999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccC----CCEEEEEecCCCC
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR----VNVTVIAATNRPD 924 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~----~~v~VI~aTN~p~ 924 (1086)
+.|++++++|++|+.|+..+|||+||||||++.++|... +.+...|++.|||+-||++... ..|+||+||||||
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999999663 3366789999999999988543 6799999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCC--
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA-- 1002 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~-- 1002 (1086)
.|||||.|+||||+.|.+..|+..+|.+||+..++++.+..++++++||+.|.||.|+||.++|.+|+..|+++.++.
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875420
Q ss_pred ----------------------------------------------------------CCCCHHHHHHHHHhhCCC----
Q 001395 1003 ----------------------------------------------------------SRITMQHLKTAIRHVQPS---- 1020 (1086)
Q Consensus 1003 ----------------------------------------------------------~~It~~d~~~al~~~~p~---- 1020 (1086)
-.|..+||.+|+..++|+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 026789999999999997
Q ss_pred -----------chhHHHHHHHHHHHHHhccccccccccccccccccchhHH
Q 001395 1021 -----------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMW 1060 (1086)
Q Consensus 1021 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~ 1060 (1086)
++..+++++.++...+..+.+.+..+..+......|+.||
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~ 551 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLC 551 (802)
T ss_pred cceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEe
Confidence 2457889999999999999888877766666655566655
No 12
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-45 Score=408.43 Aligned_cols=244 Identities=43% Similarity=0.685 Sum_probs=232.5
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
..+++|+|+-|.+++|++|.|.+++ ++.|+.|.++|-+-|+||||+||||||||+||||+|.+.+.||+...++++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3478999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCCh
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 928 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~ 928 (1086)
|||...+.+|++|+.|++.+||||||||||+++.+|..... ......+||||.+|||+.++.+++||+|||.|+.||+
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 99999999999999999999999999999999998865433 2678899999999999999999999999999999999
Q ss_pred hhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 001395 929 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 1008 (1086)
Q Consensus 929 aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~ 1008 (1086)
||.||||||++|.+|.||..-|.+||+.|+.++++..++|+.-+|+-|.||+|+||+++++.|+..|..++ ...|+|+
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--a~~VtM~ 532 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--AEMVTMK 532 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--cccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 6789999
Q ss_pred HHHHHHHhh
Q 001395 1009 HLKTAIRHV 1017 (1086)
Q Consensus 1009 d~~~al~~~ 1017 (1086)
||+.|-+++
T Consensus 533 ~LE~akDrI 541 (752)
T KOG0734|consen 533 HLEFAKDRI 541 (752)
T ss_pred HHhhhhhhe
Confidence 999998775
No 13
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-44 Score=416.33 Aligned_cols=228 Identities=44% Similarity=0.701 Sum_probs=217.5
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc
Q 001395 404 ATVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 482 (1086)
Q Consensus 404 ~~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s 482 (1086)
+.+...|+||||++++|.+|++.|.++. .++.|.++|+.|++|||||||||||||++||++|++.+++|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 3455678999999999999999999984 469999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 483 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
+|+|++|+.++++|+.|++..|||||+||||+++..|++..++...|++++||+.||++....+|+|||+||+|+.||+|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998766788999999999999999999999999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
++||||||+.|+| |.||.+.|++||+.++++++.. .++++++||+.|+||+|+||..+|++|++.
T Consensus 587 LlRPGRlD~iiyV--------------plPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 587 LLRPGRLDRIIYV--------------PLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred HcCCcccceeEee--------------cCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999876 558999999999999999999999999999
Q ss_pred HHHH
Q 001395 643 CLRR 646 (1086)
Q Consensus 643 a~rr 646 (1086)
|+++
T Consensus 652 a~~e 655 (693)
T KOG0730|consen 652 ALRE 655 (693)
T ss_pred HHHH
Confidence 9876
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.8e-41 Score=397.78 Aligned_cols=384 Identities=24% Similarity=0.368 Sum_probs=297.6
Q ss_pred CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhh
Q 001395 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFS 582 (1086)
Q Consensus 503 ~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~ 582 (1086)
.|.|+++.|+|.++.. ..++..|.++...+...+..+||.+.+ -.+++.|.+ +-..+.+
T Consensus 81 ~~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~------- 139 (489)
T CHL00195 81 TPALFLLKDFNRFLND---------ISISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEF------- 139 (489)
T ss_pred CCcEEEEecchhhhcc---------hHHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEee-------
Confidence 4789999999998721 223444444443344445555555543 356666654 3334555
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q 001395 583 LLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGT 662 (1086)
Q Consensus 583 ~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~ 662 (1086)
|.|+.+++.++++.+....+..+++..++.+++.+.|++-.+++.+++.+.. +....
T Consensus 140 -------~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~~~------------ 196 (489)
T CHL00195 140 -------PLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----TYKTI------------ 196 (489)
T ss_pred -------cCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCC------------
Confidence 9999999999999988776777889999999999999999999988765321 10000
Q ss_pred cccccCCccccccccccccccccccccccccCCCCCCCCccccccCCcccccchHHHHhhccCCCCCCCCCCcccccccc
Q 001395 663 LFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCA 742 (1086)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 742 (1086)
+.+ .+..+.
T Consensus 197 ----------~~~---------------------------------------~~~~i~---------------------- 205 (489)
T CHL00195 197 ----------DEN---------------------------------------SIPLIL---------------------- 205 (489)
T ss_pred ----------Chh---------------------------------------hHHHHH----------------------
Confidence 000 000000
Q ss_pred ccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcc
Q 001395 743 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSK 822 (1086)
Q Consensus 743 ~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGK 822 (1086)
+.-.+.+.+ ...- ....++++|++|+|++.+|+.+.+.... +.......|+++|+|+||||||||||
T Consensus 206 -----~~k~q~~~~---~~~l--e~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGK 272 (489)
T CHL00195 206 -----EEKKQIISQ---TEIL--EFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGK 272 (489)
T ss_pred -----HHHHHHHhh---hccc--cccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcH
Confidence 000000000 0000 1123567899999999999998876542 23445678999999999999999999
Q ss_pred hHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHH
Q 001395 823 TLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 902 (1086)
Q Consensus 823 TtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL 902 (1086)
|++|+++|++++.+|+.++++.++++|+|+++..++.+|..|+..+||||||||||.++..+...++ .+...+++++++
T Consensus 273 TllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d-~~~~~rvl~~lL 351 (489)
T CHL00195 273 SLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD-SGTTNRVLATFI 351 (489)
T ss_pred HHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC-chHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876543322 355789999999
Q ss_pred HHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC--CcccHHHHHHHcCCCc
Q 001395 903 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS--SDVNIRELACLSEGCT 980 (1086)
Q Consensus 903 ~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~--~d~~l~~La~~t~g~s 980 (1086)
..|+. ...+|+||+|||+++.||++++|+||||+.++|+.|+.++|.+||+.++++.... .+.+++.||+.|+|||
T Consensus 352 ~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 352 TWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 99985 3568999999999999999999999999999999999999999999999886533 4788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
|+||+++|.+|+..|..+. ..++.+||..|++.+.|.
T Consensus 430 GAdI~~lv~eA~~~A~~~~---~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 430 GAEIEQSIIEAMYIAFYEK---REFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCC
Confidence 9999999999999998764 579999999999999996
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-43 Score=365.07 Aligned_cols=252 Identities=42% Similarity=0.716 Sum_probs=236.7
Q ss_pred hhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc
Q 001395 766 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 845 (1086)
Q Consensus 766 ~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel 845 (1086)
...+|+-+++-++|++..++++++.++.|.+||++|+.+|+..|+|+|||||||||||++|+++|....+.||.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 846 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
+.+|+|+..+.+|++|-.|+..+|+|||.||||+++..|...+.+ +....|.+-+||+.|||++...++-||+|||+.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999988665443 3344566777888999999999999999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 1004 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~ 1004 (1086)
.+||||+||||+|+.|+||+|+.+.|.+||++|.+++.+...++++.+|+...|.+|+++..+|.+|.++|+++. ...
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer--rvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER--RVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--hcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 567
Q ss_pred CCHHHHHHHHHhhCC
Q 001395 1005 ITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 1005 It~~d~~~al~~~~p 1019 (1086)
+|.+||+-|+.++-.
T Consensus 376 vtqedfemav~kvm~ 390 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQ 390 (404)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999887643
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-43 Score=365.08 Aligned_cols=249 Identities=40% Similarity=0.698 Sum_probs=234.3
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.|++++.|++|++-.|++++++++.|+.+.++++.+|+.||+|+|+|||||||||+||+|+|+...+.||.+.+++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
+|.|+..+.+|.+|+.|+.++|+||||||||+++.+|-+...+ .....|++-+||+.|||+.+..+|-||+|||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999999998665443 233456777889999999999999999999999999
Q ss_pred ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001395 927 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 927 D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It 1006 (1086)
||||+||||+|+.|+||+|+..++.-+|.....++.+..++|++.+..+.+..+|+||.++|++|.+.|++++ .-.|.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n--ryvvl 385 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN--RYVVL 385 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 55788
Q ss_pred HHHHHHHHHhhC
Q 001395 1007 MQHLKTAIRHVQ 1018 (1086)
Q Consensus 1007 ~~d~~~al~~~~ 1018 (1086)
..||+++.+...
T Consensus 386 ~kd~e~ay~~~v 397 (408)
T KOG0727|consen 386 QKDFEKAYKTVV 397 (408)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-43 Score=366.98 Aligned_cols=258 Identities=42% Similarity=0.694 Sum_probs=237.1
Q ss_pred CchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcE
Q 001395 758 RPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF 837 (1086)
Q Consensus 758 ~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f 837 (1086)
.|+..-..+.+.|++++.|++|..+.++.|++.++.|+.||+.|-.+|+.||+|+|+|||||||||++|||+|+..++-|
T Consensus 160 dpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 160 DPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 34433334457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEE
Q 001395 838 LAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTV 916 (1086)
Q Consensus 838 i~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~V 916 (1086)
|.+-+++|+.+|+|+..+.+|++|+.|+....|||||||||++++.|-+++.+ .....|.+-+|++.||++.+++++-|
T Consensus 240 irvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999998665432 22334556667788899999999999
Q ss_pred EEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 917 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAI 996 (1086)
Q Consensus 917 I~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~ 996 (1086)
++|||+|+.+||||+||||+|+.++|.+|+.+.|..||++|.+.+.+..++.++.||+.+..-+|++|+.+|.+|.+.|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHhh
Q 001395 997 EENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 997 ~~~~~~~~It~~d~~~al~~~ 1017 (1086)
+.. .+..|..||.+|+.++
T Consensus 400 rar--rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 400 RAR--RKVATEKDFLDAVNKV 418 (435)
T ss_pred HHH--hhhhhHHHHHHHHHHH
Confidence 876 5678999999999886
No 18
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=406.50 Aligned_cols=248 Identities=44% Similarity=0.754 Sum_probs=232.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
..++|.|+.|.+++|++|+|++.+ +++|+.|+++|.+.|+|+||+||||||||+||||+|.+.+.||+.++++|++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999997 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCC--CCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK--ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~--~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
+|.....+|++|..|+..+|||||+||||+++..|+. ...+....+..+||||.+||+.....+|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999999952 22333456788999999999998888999999999999999
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It 1006 (1086)
+||+||||||+.|++++|+...|.+|++.|+++..+. .++++..+|..|.||+|+||.++|++|++.|.++. ...|+
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~--~~~i~ 542 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG--LREIG 542 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc--cCccc
Confidence 9999999999999999999999999999999999985 88899999999999999999999999999999987 56799
Q ss_pred HHHHHHHHHhhCCC
Q 001395 1007 MQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1007 ~~d~~~al~~~~p~ 1020 (1086)
..||..|++++.-.
T Consensus 543 ~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 543 TKDLEYAIERVIAG 556 (774)
T ss_pred hhhHHHHHHHHhcc
Confidence 99999999976554
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-42 Score=364.71 Aligned_cols=248 Identities=40% Similarity=0.713 Sum_probs=231.5
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
..|..+|.|++|++..+++|++.++.|+.||+.++.+|+.+|+|++|||+||||||+||+|+|+...+.|+.+-+++|+.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCC-CccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV-SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~-~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
+|.|+..+.+|++|..|...+|+|+||||||+++.+|-+.+.++ ....|.+-+||+.||++..+.+|-||+|||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999886654432 22345555778888999999999999999999999
Q ss_pred ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001395 927 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 927 D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It 1006 (1086)
||||+||||+|+.|.|+.||...+..||++|..++.+..+++++.+...-+.+||+||.++|.+|.+.|+|+. ...++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer--Rm~vt 415 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER--RMKVT 415 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH--Hhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 56799
Q ss_pred HHHHHHHHHhh
Q 001395 1007 MQHLKTAIRHV 1017 (1086)
Q Consensus 1007 ~~d~~~al~~~ 1017 (1086)
++||.+|.+++
T Consensus 416 ~~DF~ka~e~V 426 (440)
T KOG0726|consen 416 MEDFKKAKEKV 426 (440)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 20
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=355.11 Aligned_cols=251 Identities=42% Similarity=0.696 Sum_probs=234.3
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
-+.|...++||+|++..+++|.+++..|+.|++.|..+|+++|+|+|+|||||||||++|||.|...+..|+.+-++.++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCC-CCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 847 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~-~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
..|+|+..+-+|..|+.|+..+|+||||||+|+++.+|.++.. +.....|.+-+||+.|||+.....|-||+|||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 9999999999999999999999999999999999998865443 223345566678888999999999999999999999
Q ss_pred CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001395 926 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 1005 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~I 1005 (1086)
+||||+|.||+|+.|+||.|+.+.|.+|+++|.+++....|+++++||+.|++|+|++..++|-+|.+.|+|+. ...|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~--atev 400 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG--ATEV 400 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc--cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 6689
Q ss_pred CHHHHHHHHHhhCC
Q 001395 1006 TMQHLKTAIRHVQP 1019 (1086)
Q Consensus 1006 t~~d~~~al~~~~p 1019 (1086)
+.+||.+.+.+++.
T Consensus 401 ~heDfmegI~eVqa 414 (424)
T KOG0652|consen 401 THEDFMEGILEVQA 414 (424)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999998877643
No 21
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-41 Score=358.56 Aligned_cols=266 Identities=36% Similarity=0.660 Sum_probs=237.9
Q ss_pred hhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEe
Q 001395 762 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 841 (1086)
Q Consensus 762 ~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~ 841 (1086)
...++.+.|+|.|+|+.|++.+|+.|+|++..|.+.|.+|.. +..|.+|+||||||||||++||+|+|.+.+..|++|+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 345667899999999999999999999999999999999985 5677899999999999999999999999999999999
Q ss_pred CCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-cCCCEEEEEec
Q 001395 842 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAAT 920 (1086)
Q Consensus 842 ~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-~~~~v~VI~aT 920 (1086)
.++|+++|.|++++.++.+|+.||...|+||||||||++++.|.... .+..+|+..+||..|+|+. ..++|+|++||
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE--seasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE--SEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc--hHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 99999999999999999999999999999999999999998886543 3678999999999999884 45689999999
Q ss_pred CCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 921 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 921 N~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~ 999 (1086)
|-|+.||.|+.| ||++.||+|+|....|..+|+.|+.+.+.. .+.|+.+|+++|+||+|+||.-++++|.+..+|..
T Consensus 277 NiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 277 NIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred CCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 999999999999 999999999999999999999999887755 67789999999999999999999999999988764
Q ss_pred cC--------------------------------------------CCCCCHHHHHHHHHhhCCCc----hhHHHHHHHH
Q 001395 1000 LD--------------------------------------------ASRITMQHLKTAIRHVQPSE----IHSYKELSAK 1031 (1086)
Q Consensus 1000 ~~--------------------------------------------~~~It~~d~~~al~~~~p~~----~~~~~~~~~~ 1031 (1086)
.. ...||+.||..++.+.+|.. ...++++.+.
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~d 434 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTED 434 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Confidence 21 12589999999999999983 3444444444
Q ss_pred H
Q 001395 1032 F 1032 (1086)
Q Consensus 1032 ~ 1032 (1086)
|
T Consensus 435 F 435 (439)
T KOG0739|consen 435 F 435 (439)
T ss_pred h
Confidence 3
No 22
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-40 Score=382.00 Aligned_cols=232 Identities=37% Similarity=0.617 Sum_probs=210.2
Q ss_pred hccccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc
Q 001395 403 QATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 482 (1086)
Q Consensus 403 ~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s 482 (1086)
..++...|+||||++++|..|.+-|..|.....+...|+++..|||||||||||||.+|||+|.++...|+.|.|+++++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 34666788999999999999999999985444455679999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC--chhHHHHHHHHHHHhhccc--cCCCeeEEeccCCCCC
Q 001395 483 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG--EELSQRMVATLLNLMDGVC--RTDGVLVIAATNRPDS 558 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~--~~~~~rv~~~Ll~lLd~l~--~~~~viVIatTN~~d~ 558 (1086)
+|+|++|+.++++|+.|+..+|||||+||+|+++|+|+..+ +.+..|++.||+..||++. ....|+|||||||||.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 99999999999999999999999999999999999987544 4578999999999999997 4578999999999999
Q ss_pred CCccccCCCCcceeeehhhhhhhhhcccCCCCCC-CHHHHHHHHHHHHccCccccchHHHHHHHHHcC-CCcHHHHHHHH
Q 001395 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVP-SPAQRLEILHALLSGMEHSLLDSEVEYLSMATH-GFVGADLAALC 636 (1086)
Q Consensus 559 idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~P-d~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~-GfsgaDL~~L~ 636 (1086)
|||+|+||||||+.+++ +++ |.+.+..||++..+++.+. .++++.++|+.++ .|+|+|+-+||
T Consensus 824 LDpALLRPGRFDKLvyv--------------G~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYV--------------GPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred cChhhcCCCccceeEEe--------------cCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHH
Confidence 99999999999999999 554 5677889999999998876 6788999999874 69999999999
Q ss_pred HHHHHHHHHHhcc
Q 001395 637 NEAALVCLRRYSK 649 (1086)
Q Consensus 637 ~eA~~~a~rr~~~ 649 (1086)
..|.+.|++|...
T Consensus 889 SdA~l~AikR~i~ 901 (953)
T KOG0736|consen 889 SDAMLAAIKRTIH 901 (953)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998543
No 23
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-40 Score=340.98 Aligned_cols=265 Identities=34% Similarity=0.537 Sum_probs=231.3
Q ss_pred EcCCceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhhh-hHhhhcCCCCCCe
Q 001395 368 INHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKG 446 (1086)
Q Consensus 368 i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~-~~~~~lgi~~~~~ 446 (1086)
..|++.|.++..+|.....+++.......+...+. .+...+.||||++-+|++|++.+++|... +++++.|+.||+|
T Consensus 114 lkps~svalhrhsnalvdvlppeadssi~ml~~~e--kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprg 191 (408)
T KOG0727|consen 114 LKPSASVALHRHSNALVDVLPPEADSSISMLGPDE--KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRG 191 (408)
T ss_pred cCCccchhhhhcccceeeccCCcccccccccCCCC--CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcc
Confidence 34567777777777666555554433333222222 23345589999999999999999999553 8899999999999
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---C
Q 001395 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---G 523 (1086)
Q Consensus 447 vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~ 523 (1086)
+|+|||||||||+||+++|+...+.|+++.|++++.+|.|+..+.++.+|..|+.+.|+||||||+|+|+.+|-+. .
T Consensus 192 vllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtga 271 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGA 271 (408)
T ss_pred eEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887543 3
Q ss_pred chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 524 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
+...+|++-+|++.||++....+|-||++||+.+.+||+|+||||+||.|++ |.||..+++-++..
T Consensus 272 drevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkief--------------plpdrrqkrlvf~t 337 (408)
T KOG0727|consen 272 DREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF--------------PLPDRRQKRLVFST 337 (408)
T ss_pred cHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccC--------------CCCchhhhhhhHHh
Confidence 4456888999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 604 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 604 ~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
.+.+|.+. ++.+++.+..+.+..+|+||.++|++|+|.|+|..+-
T Consensus 338 itskm~ls-~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry 382 (408)
T KOG0727|consen 338 ITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY 382 (408)
T ss_pred hhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce
Confidence 99999876 7889999999999999999999999999999987543
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=374.17 Aligned_cols=251 Identities=39% Similarity=0.667 Sum_probs=233.1
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
.+.|+++|+||+|++.+++++++.+++|+.+++.|+.+|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 847 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
.+|+|+.++.++.+|..|+..+|+||||||+|.++..|.....+ .....+++.+|+..|++.....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999998877443222 12345778889999998877789999999999999
Q ss_pred CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001395 926 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 1005 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~I 1005 (1086)
||++++||||||+.|+|++|+.++|..||+.+++++++..++++..++..++||+|+||.++|++|++.|+++. ...|
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--~~~i 374 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN--RYVI 374 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--CCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886 5689
Q ss_pred CHHHHHHHHHhhCC
Q 001395 1006 TMQHLKTAIRHVQP 1019 (1086)
Q Consensus 1006 t~~d~~~al~~~~p 1019 (1086)
+.+||.+|+.++..
T Consensus 375 ~~~df~~A~~~v~~ 388 (398)
T PTZ00454 375 LPKDFEKGYKTVVR 388 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988643
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=340.66 Aligned_cols=243 Identities=33% Similarity=0.575 Sum_probs=221.2
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
..++++++|++||+++|+..+-.+++ +.+|+.|.+ ..|+++|||||||||||++|||+|++.+.||+.+++.++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 35788999999999999998776665 678877654 57999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
.++|+..+.+++++.+|+..+|||+||||+|+|+-.|..+.-.++ ..+++|.||++||++.++.+|+.|+|||+|+.||
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGD-VsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGD-VSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhccc-HHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999999988866544333 4579999999999999999999999999999999
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHH-HHHHHHHHHHHHHhcCCCCCC
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADIS-LICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~-~l~~~A~~~A~~~~~~~~~It 1006 (1086)
+|+.+ ||...|+|.+|+.++|.+|++.+++++|+.-+.+++.++..|.|+||+||. .++..|...|+.+. ...|+
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed--~e~v~ 344 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED--REKVE 344 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc--hhhhh
Confidence 99999 999999999999999999999999999999999999999999999999995 56778888898886 56799
Q ss_pred HHHHHHHHHhhCC
Q 001395 1007 MQHLKTAIRHVQP 1019 (1086)
Q Consensus 1007 ~~d~~~al~~~~p 1019 (1086)
.+|++.|+++..+
T Consensus 345 ~edie~al~k~r~ 357 (368)
T COG1223 345 REDIEKALKKERK 357 (368)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987443
No 26
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-39 Score=333.90 Aligned_cols=262 Identities=34% Similarity=0.557 Sum_probs=225.3
Q ss_pred EcCCceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhh-hhhhHhhhcCCCCCCe
Q 001395 368 INHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISS-SVKSTLSSLGLRPTKG 446 (1086)
Q Consensus 368 i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~-~~~~~~~~lgi~~~~~ 446 (1086)
+++.+.|.+...+....+.++....|-...+ -.+.++...++-|||++.++++|+|.|++| +.+++|+.+|+..|+|
T Consensus 106 ~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLM--mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKG 183 (404)
T KOG0728|consen 106 VTPSSRVALRNDSYTLHKILPNKVDPLVSLM--MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKG 183 (404)
T ss_pred cCCcceEEEeccchHHHHhcccccchhhHHH--hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcc
Confidence 4556777776655544443333222222111 122233344578999999999999999998 4579999999999999
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---C
Q 001395 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---G 523 (1086)
Q Consensus 447 vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~ 523 (1086)
+|||||||||||.||+++|+...+.|+++++++++.+|+|+..+.++++|-.|+.+.|+|||+||||++...|.++ +
T Consensus 184 vlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~gg 263 (404)
T KOG0728|consen 184 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGG 263 (404)
T ss_pred eEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877543 3
Q ss_pred chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 524 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
+...+|..-+|++.||++....++-||++||+.|-+||||+||||.||.|+| |+|+++.|.+||+.
T Consensus 264 dsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkief--------------p~p~e~ar~~ilki 329 (404)
T KOG0728|consen 264 DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEF--------------PPPNEEARLDILKI 329 (404)
T ss_pred cHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccC--------------CCCCHHHHHHHHHH
Confidence 4556788888999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 604 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 604 ~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
+.+++++. ...+++.+|+...|-+|+++..+|.+|+|.|+|.
T Consensus 330 hsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~alre 371 (404)
T KOG0728|consen 330 HSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE 371 (404)
T ss_pred hhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH
Confidence 99999865 5678999999999999999999999999999875
No 27
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=365.94 Aligned_cols=238 Identities=34% Similarity=0.548 Sum_probs=221.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
...|+|+-|+++.|++|+|++++.+-+..|.++|-+-|+||||+||||||||+|||++|.+.+++|+...|+++-..|+|
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 34578999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCC
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRP 566 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~ 566 (1086)
...++++++|+.|+...||||||||||++..+|......+.+..++|||..||++.++.+|+||++||.|+.+|+||.||
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RP 459 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRP 459 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCC
Confidence 99999999999999999999999999999999987766688999999999999999999999999999999999999999
Q ss_pred CCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 567 GRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 567 GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
||||++|.+ |.||-..|.+||+.++.+..+. .++++..||+-|.||+|+||++|++.|+..|...
T Consensus 460 GRFD~~v~V--------------p~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 460 GRFDRHVTV--------------PLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred CccceeEec--------------CCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 999999999 9999999999999999987765 6788999999999999999999999999999877
Q ss_pred hcccccccccccc
Q 001395 647 YSKIQTSSDVLHS 659 (1086)
Q Consensus 647 ~~~~~~~~~~l~~ 659 (1086)
.....++.++-..
T Consensus 525 ga~~VtM~~LE~a 537 (752)
T KOG0734|consen 525 GAEMVTMKHLEFA 537 (752)
T ss_pred CcccccHHHHhhh
Confidence 6555544444333
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-39 Score=382.32 Aligned_cols=247 Identities=43% Similarity=0.732 Sum_probs=233.3
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
...++|.|+.|.+++|+++.|.+.+ +++|..|..+|...|+|++|+||||||||+||||+|.+.+.||+.+++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4578999999999999999999986 799999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCC-CCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~-~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
|+|.....+|++|..|+.++||||||||||++...|+.. +.+...-+..+||||.+||+...+.+|+||++||||+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999999654 3333445569999999999999888999999999999999
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 1007 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~ 1007 (1086)
+||+||||||+.|.++.||...|.+|++.|+++.++..++++..+|+.|.||+|+|+.+++++|++.|.+++ ...|++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n--~~~i~~ 380 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN--KKEITM 380 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--CeeEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 678999
Q ss_pred HHHHHHHHhhC
Q 001395 1008 QHLKTAIRHVQ 1018 (1086)
Q Consensus 1008 ~d~~~al~~~~ 1018 (1086)
.||.+|.+++.
T Consensus 381 ~~i~ea~drv~ 391 (596)
T COG0465 381 RDIEEAIDRVI 391 (596)
T ss_pred cchHHHHHHHh
Confidence 99999998863
No 29
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-39 Score=352.35 Aligned_cols=230 Identities=36% Similarity=0.554 Sum_probs=209.4
Q ss_pred hccccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc
Q 001395 403 QATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 482 (1086)
Q Consensus 403 ~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s 482 (1086)
+..+...|+||.|+.+.|+.|+|+|..|..-..|.+....|.++||++||||||||+||+|+|.+++..||.|+.+.+.+
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 44555678999999999999999999996555555567789999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC-CchhHHHHHHHHHHHhhccccC-CC---eeEEeccCCCC
Q 001395 483 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG-GEELSQRMVATLLNLMDGVCRT-DG---VLVIAATNRPD 557 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~rv~~~Ll~lLd~l~~~-~~---viVIatTN~~d 557 (1086)
+|.|++|+.++-+|+.|+...|++|||||||+|+.+|+.. ..+.++|+..+||.+||++... .+ |+|+++||.|+
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 9999999999999999999999999999999999988654 4567899999999999998543 33 89999999999
Q ss_pred CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHH
Q 001395 558 SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 637 (1086)
Q Consensus 558 ~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~ 637 (1086)
+||.||+| ||++.|+| |.|+.+.|..+++..++..... ++..++.|++.++||+|+||.++|+
T Consensus 364 diDEAlrR--RlEKRIyI--------------PLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYI--------------PLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred chHHHHHH--HHhhheee--------------eCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHHH
Confidence 99999999 99999999 9999999999999999887654 7788999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 001395 638 EAALVCLRRYSK 649 (1086)
Q Consensus 638 eA~~~a~rr~~~ 649 (1086)
+|.|.++||...
T Consensus 427 eAsm~~mRR~i~ 438 (491)
T KOG0738|consen 427 EASMMAMRRKIA 438 (491)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 30
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.7e-38 Score=365.06 Aligned_cols=254 Identities=47% Similarity=0.784 Sum_probs=234.3
Q ss_pred hhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc
Q 001395 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 844 (1086)
Q Consensus 765 ~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se 844 (1086)
.+.+.|+++|+||+|+++.++++++.+.+|+.+++.|+.+|+.+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCC-CccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 845 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV-SVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~-~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
+..+|+|++++.++.+|..|+...|+||||||+|.++..|+....+. ....+.+.+++.++++.....+++||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998776543221 22345677788888887777799999999999
Q ss_pred CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 001395 924 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003 (1086)
Q Consensus 924 ~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~ 1003 (1086)
+.+|++++||||||+.|+|++|+.++|.+||+.+++++++..++++..+|..|+||+|+||+++|++|++.|+++. ..
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--~~ 358 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--RT 358 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--CC
Confidence 9999999999999999999999999999999999999999888999999999999999999999999999999985 56
Q ss_pred CCCHHHHHHHHHhhCCC
Q 001395 1004 RITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1004 ~It~~d~~~al~~~~p~ 1020 (1086)
.|+.+||.+|+..+++.
T Consensus 359 ~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 359 EVTMEDFLKAIEKVMGK 375 (389)
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 79999999999998876
No 31
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=381.20 Aligned_cols=382 Identities=32% Similarity=0.518 Sum_probs=295.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVV 481 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~ 481 (1086)
..|++||||+.++..++|++..+++ ++.|.++++.||+|+|||||||||||+.|+++|..+ ...|+.-.+.+..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 4679999999999999999998854 699999999999999999999999999999999887 3467888899999
Q ss_pred cccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCc
Q 001395 482 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561 (1086)
Q Consensus 482 s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idp 561 (1086)
++|+|+.++.++.+|++|+..+|+|||+||||-++|.|....++....++..|+.+||++..++.|+||+|||+++.+||
T Consensus 342 skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dp 421 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDP 421 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccch
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred cccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 562 aL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
++||||||||++++ +.|+.+.|..|+.++.++....+....+..+|+.|.||.|+||++||.+|++
T Consensus 422 aLRRPgrfdref~f--------------~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal 487 (1080)
T KOG0732|consen 422 ALRRPGRFDREFYF--------------PLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAAL 487 (1080)
T ss_pred hhcCCcccceeEee--------------eCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhh
Confidence 99999999999999 9999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHhccccccc-cccccccccccccCCccccccccccccccccccccccccCCCCCCCCccccccCCcccccchHHHH
Q 001395 642 VCLRRYSKIQTSS-DVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIA 720 (1086)
Q Consensus 642 ~a~rr~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 720 (1086)
.+++|--...-.. +.+.
T Consensus 488 ~~~~r~~Pq~y~s~~kl~-------------------------------------------------------------- 505 (1080)
T KOG0732|consen 488 IALRRSFPQIYSSSDKLL-------------------------------------------------------------- 505 (1080)
T ss_pred hhhccccCeeeccccccc--------------------------------------------------------------
Confidence 9998743321000 0000
Q ss_pred hhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCcc-ccc-cccchhHHH-------------
Q 001395 721 DNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVK-WED-VGGQREVKT------------- 785 (1086)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~-~~d-i~G~e~vk~------------- 785 (1086)
-+...+++...||..|+.++.|+..|...+...+.. .-- +.+...+..
T Consensus 506 -----------------~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~ 568 (1080)
T KOG0732|consen 506 -----------------IDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMA 568 (1080)
T ss_pred -----------------ccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhh
Confidence 011113356666777766666665553222111111 000 111111111
Q ss_pred HHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-CCcEEEEeCCcccccc-ccccHHHHHHHHHH
Q 001395 786 QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKGPELFSKW-VGESEKAVRSLFAK 863 (1086)
Q Consensus 786 ~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-~~~fi~v~~sel~~~~-vGese~~ir~lf~~ 863 (1086)
.+.+...+..+.-+..-.+.+-....+++.|..|.|-+.+..||-+.+ +.++.....+.++..- .+..+..+..+|..
T Consensus 569 k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~e 648 (1080)
T KOG0732|consen 569 KIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFME 648 (1080)
T ss_pred hHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 111111111110000000011112238889999999999999997665 6666666666665544 45567788999999
Q ss_pred HHhcCCeEEEEecCchhhh
Q 001395 864 ARANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 864 A~~~~p~ILflDEid~L~~ 882 (1086)
|+...||||||-.+|.+..
T Consensus 649 aR~~~psi~~ip~~d~w~~ 667 (1080)
T KOG0732|consen 649 ARKTTPSIVFIPNVDEWAR 667 (1080)
T ss_pred HhccCCceeeccchhhhhh
Confidence 9999999999999997754
No 32
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-38 Score=335.36 Aligned_cols=225 Identities=37% Similarity=0.632 Sum_probs=208.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
..++.||||++.++++|+|.+++|.. ++.|+..|+.||+||+|||+||||||.||+++|+...+.|+++-+++++.+|.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 34568999999999999999999953 69999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
|+..+.++++|+.|..++|+|+||||||++..+|.+. +...-+|..-+|++.+|++..++.|-||++||+.+.+||+
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPa 340 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA 340 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHh
Confidence 9999999999999999999999999999999988543 3445567777888999999999999999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
|.||||+||.|+| +.||...+..||++|...|.+. .++.++.+....+.++|+||.++|.+|.+.
T Consensus 341 LiRPGrIDrKIef--------------~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGll 405 (440)
T KOG0726|consen 341 LIRPGRIDRKIEF--------------PLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLL 405 (440)
T ss_pred hcCCCcccccccc--------------CCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHH
Confidence 9999999999999 9999999999999999998765 678889998889999999999999999999
Q ss_pred HHHH
Q 001395 643 CLRR 646 (1086)
Q Consensus 643 a~rr 646 (1086)
|+|.
T Consensus 406 AlRe 409 (440)
T KOG0726|consen 406 ALRE 409 (440)
T ss_pred HHHH
Confidence 9885
No 33
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-38 Score=344.32 Aligned_cols=230 Identities=40% Similarity=0.674 Sum_probs=215.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhC-CCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg-~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
-.|+|+||+|++.+++++++.+..|+.+++.|...+ .++++|+|||||||||||++|+|+|++.+++|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 468999999999999999999999999999997544 6889999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCC--EEEEEecCCCCCC
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDKI 926 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~--v~VI~aTN~p~~l 926 (1086)
|.|++++.++.+|..|....||||||||+|++.+.|+ ....+....+-++++..-||+....+ |+|++|||||..+
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 9999999999999999999999999999999999883 33347788888999999999976655 9999999999999
Q ss_pred ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 001395 927 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003 (1086)
Q Consensus 927 D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~ 1003 (1086)
|.|++| |+.+.++++.|+.++|.+||+..+++..+..++|+.++|..|+||||+||.++|+.|+...+++.+..+
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999876543
No 34
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=360.88 Aligned_cols=250 Identities=41% Similarity=0.703 Sum_probs=231.0
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
.+.|.++|+||+|++..++++++++++++.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 847 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
.+|+|+.++.++.+|..|+...|+||||||||.++..|.....+ .....+.+.+++..|++.....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999999999999999999999999999999999877543222 12234667788889998877789999999999999
Q ss_pred CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001395 926 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 1005 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~I 1005 (1086)
+|++++||||||+.|+|++|+.++|.+||+.++.++.+..+++++.++..++||+|+||+++|++|++.|+++. ...|
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--r~~V 412 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER--RMKV 412 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 5679
Q ss_pred CHHHHHHHHHhhC
Q 001395 1006 TMQHLKTAIRHVQ 1018 (1086)
Q Consensus 1006 t~~d~~~al~~~~ 1018 (1086)
+.+||.+|+.++.
T Consensus 413 t~~D~~~A~~~v~ 425 (438)
T PTZ00361 413 TQADFRKAKEKVL 425 (438)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998863
No 35
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-38 Score=326.04 Aligned_cols=235 Identities=41% Similarity=0.646 Sum_probs=216.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
+...++||||++++++++.+.|.++. .++.|+++|+.||+|+|+|||||||||.+||++|.+.+..|+.+.++.++..|
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf 245 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF 245 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence 33456899999999999999999884 36899999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCc
Q 001395 485 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idp 561 (1086)
+|+..+.++..|.-|+...|+||||||+|+|..+|-+. ++...+|..-+|++.||++.....+-||++||+.+-+||
T Consensus 246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP 325 (424)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence 99999999999999999999999999999999887543 444567788889999999999999999999999999999
Q ss_pred cccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 562 aL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
+|+|.||+||.|+| |.|+++.|.+|+++|.++|... +++.+++||+.|++|.|+...++|-+|+|
T Consensus 326 ALlRSGRLDRKIEf--------------P~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAGM 390 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEF--------------PHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAGM 390 (424)
T ss_pred HHhhcccccccccC--------------CCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhhH
Confidence 99999999999999 9999999999999999999876 78899999999999999999999999999
Q ss_pred HHHHHhcccccccc
Q 001395 642 VCLRRYSKIQTSSD 655 (1086)
Q Consensus 642 ~a~rr~~~~~~~~~ 655 (1086)
.|+||......+.+
T Consensus 391 iALRr~atev~heD 404 (424)
T KOG0652|consen 391 IALRRGATEVTHED 404 (424)
T ss_pred HHHhcccccccHHH
Confidence 99999765544433
No 36
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-37 Score=356.09 Aligned_cols=228 Identities=38% Similarity=0.637 Sum_probs=216.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhh-hhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 408 QDISKLGGLSKEYAILKDIIISS-SVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~-~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
-.|+||+|+.++++.|+++|++| +++.+|.+.+++.+.|||||||||||||.||-++|...+..|+.+.|+++.++|+|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 46799999999999999999998 45799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCC
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRP 566 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~ 566 (1086)
.+|+.++.+|..|...+|||||+||+|+++|+|+........|++++|++.||+...-.+|.|+++|.|||.|||||+||
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRp 823 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRP 823 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCC
Confidence 99999999999999999999999999999999998888899999999999999998889999999999999999999999
Q ss_pred CCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 567 GRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 567 GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
||+|+.++. +.|++.+|++||+.+....... ++.+++.+|..|+||+|+|+..|+..|.+.|+++
T Consensus 824 GRlD~~v~C--------------~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 824 GRLDKLVYC--------------PLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CccceeeeC--------------CCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999988765443 6889999999999999999999999999999988
Q ss_pred hccc
Q 001395 647 YSKI 650 (1086)
Q Consensus 647 ~~~~ 650 (1086)
+...
T Consensus 889 ~l~~ 892 (952)
T KOG0735|consen 889 ILKR 892 (952)
T ss_pred HHHh
Confidence 7654
No 37
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=325.14 Aligned_cols=238 Identities=35% Similarity=0.601 Sum_probs=216.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
..+++|+||.+++++.|+|.++.|.+ ++.|.++|+.||+|||||||||||||.+||++|+..++.|+++-+++++.+|+
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyv 252 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV 252 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHh
Confidence 34458999999999999999999965 69999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC---CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~---~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
|+..+.++++|+.|+....||||+||||++.+.|-+ ++++..+|..-+|++.||++..++++-|+++||+|+.+||+
T Consensus 253 gegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpa 332 (435)
T KOG0729|consen 253 GEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPA 332 (435)
T ss_pred hhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHh
Confidence 999999999999999999999999999999987743 34556778888899999999999999999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
|+||||+||.++| ..|+.+.|..||++|.+.|... .+.-++.+|+.+..-+|++|+.+|.+|.|.
T Consensus 333 llrpgrldrkvef--------------~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmf 397 (435)
T KOG0729|consen 333 LLRPGRLDRKVEF--------------GLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMF 397 (435)
T ss_pred hcCCcccccceec--------------cCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHH
Confidence 9999999999999 8999999999999999988765 567789999999999999999999999999
Q ss_pred HHHHhcccccccccccc
Q 001395 643 CLRRYSKIQTSSDVLHS 659 (1086)
Q Consensus 643 a~rr~~~~~~~~~~l~~ 659 (1086)
|++..+...+..+.+..
T Consensus 398 airarrk~atekdfl~a 414 (435)
T KOG0729|consen 398 AIRARRKVATEKDFLDA 414 (435)
T ss_pred HHHHHhhhhhHHHHHHH
Confidence 99876665555555443
No 38
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-37 Score=325.37 Aligned_cols=229 Identities=31% Similarity=0.546 Sum_probs=213.5
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 405 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 405 ~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
.+...|+|+.||+..|+.|+|.+.+|..-..+..-+..|.++|||||||||||+.||+++|.+.+..|+.|+.++++++|
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 33456789999999999999999888332444456788999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-cCCCeeEEeccCCCCCCCccc
Q 001395 485 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-~~~~viVIatTN~~d~idpaL 563 (1086)
.|++|+.++.+|+.|+.+.|+||||||||.+++.|.++.++..+|+..+||-.|++.- ...+|+|+++||-|+.+|.|+
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAI 286 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAI 286 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999984 457899999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
|| ||++.|+| |.|+...|..+++.++...++.+.+.+++.|++.|+||+|+||.-+++.|.|..
T Consensus 287 RR--RFekRIYI--------------PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmeP 350 (439)
T KOG0739|consen 287 RR--RFEKRIYI--------------PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEP 350 (439)
T ss_pred HH--Hhhcceec--------------cCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhh
Confidence 99 99999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 001395 644 LRRYSK 649 (1086)
Q Consensus 644 ~rr~~~ 649 (1086)
+|+.+.
T Consensus 351 vRkvqs 356 (439)
T KOG0739|consen 351 VRKVQS 356 (439)
T ss_pred HHHhhh
Confidence 998654
No 39
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.1e-35 Score=356.77 Aligned_cols=248 Identities=44% Similarity=0.751 Sum_probs=228.9
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.+.++|+|++|++++|+++++.+.+ +.+++.|..+|..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 46789999999999999999999887 78999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
.++|..++.++.+|+.|+..+||||||||||.++..|+... .......+++++|+.+||+.....+++||+|||+++.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998875531 11233468899999999998888899999999999999
Q ss_pred ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001395 927 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 927 D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It 1006 (1086)
|++++||||||+.|++++|+.++|.+||+.++++.++..+.++..+|..+.||+|+||+++|++|+..|.++. ...|+
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--~~~i~ 284 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--KTEIT 284 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CCCCC
Confidence 9999999999999999999999999999999999888888899999999999999999999999999888765 56799
Q ss_pred HHHHHHHHHhhC
Q 001395 1007 MQHLKTAIRHVQ 1018 (1086)
Q Consensus 1007 ~~d~~~al~~~~ 1018 (1086)
.+||..|+.++.
T Consensus 285 ~~~l~~a~~~~~ 296 (495)
T TIGR01241 285 MNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 40
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-36 Score=358.02 Aligned_cols=231 Identities=39% Similarity=0.616 Sum_probs=216.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
...|.|+.|+++.|++|.|++.+.+.++.|.++|.+.|+|+||+||||||||.||+|+|.+.|++|+.+++++++..++|
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 35679999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCC----CCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARK----DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~----~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
....+++.+|..|+.+.||||||||||++...|. .++.+.....++||+..||++...++|+|+++||+++.+|+|
T Consensus 387 ~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~a 466 (774)
T KOG0731|consen 387 VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPA 466 (774)
T ss_pred cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHH
Confidence 9899999999999999999999999999998884 244556778999999999999888999999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
|+|||||||.|.+ +.|+..+|.+|++.|+++.....++.++..+|..|+||+|+||.++|++|+..
T Consensus 467 llrpGRfdr~i~i--------------~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~ 532 (774)
T KOG0731|consen 467 LLRPGRFDRQIQI--------------DLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALL 532 (774)
T ss_pred hcCCCccccceec--------------cCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHH
Confidence 9999999999999 88999999999999999988877888899999999999999999999999999
Q ss_pred HHHHhcccc
Q 001395 643 CLRRYSKIQ 651 (1086)
Q Consensus 643 a~rr~~~~~ 651 (1086)
|.|+.....
T Consensus 533 a~r~~~~~i 541 (774)
T KOG0731|consen 533 AARKGLREI 541 (774)
T ss_pred HHHhccCcc
Confidence 999765543
No 41
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.2e-33 Score=352.97 Aligned_cols=442 Identities=21% Similarity=0.298 Sum_probs=306.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++++|.++++..+.+++... ...++||+||||||||++|+++|+.+ +.+++.++.
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 45689999999998777665333 35679999999999999999999987 778999999
Q ss_pred cccc--cccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
..+. .+|.|+.+++++.+|+.+....++||||||+|.+.+.+...++. ..+.+.|...| .++.+.+|++||.
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l----~~g~i~~IgaTt~ 320 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPAL----SSGKLRCIGSTTY 320 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHH----hCCCeEEEEecCH
Confidence 8888 47899999999999999987788999999999998765432222 12233344444 4678999999997
Q ss_pred CC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC----ccccchHHHHHHHHHcCC
Q 001395 556 PD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 556 ~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~----~~~l~d~~l~~La~~t~G 626 (1086)
.+ ..|+++.| ||. .|+| +.|+.+++.+||+.+...+ +..+++..+..++..++.
T Consensus 321 ~e~~~~~~~d~al~r--Rf~-~i~v--------------~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 321 EEYKNHFEKDRALSR--RFQ-KIDV--------------GEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred HHHHHHhhhhHHHHH--hCc-eEEe--------------CCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 43 57999999 997 6888 9999999999999876542 345678888888887776
Q ss_pred CcHH-----HHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCC
Q 001395 627 FVGA-----DLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDL 701 (1086)
Q Consensus 627 fsga-----DL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1086)
|.+. ....|+++|+... +.....
T Consensus 384 yi~~r~~P~kai~lld~a~a~~--~~~~~~-------------------------------------------------- 411 (731)
T TIGR02639 384 YINDRFLPDKAIDVIDEAGASF--RLRPKA-------------------------------------------------- 411 (731)
T ss_pred ccccccCCHHHHHHHHHhhhhh--hcCccc--------------------------------------------------
Confidence 6433 3344555554321 100000
Q ss_pred ccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCch-------hhhhhhhhcCCccc
Q 001395 702 PTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPS-------AMREVILEVPKVKW 774 (1086)
Q Consensus 702 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps-------~~re~~~e~p~v~~ 774 (1086)
.....++.+|+..++..+..- ...+........-.
T Consensus 412 --------------------------------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~ 453 (731)
T TIGR02639 412 --------------------------------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLK 453 (731)
T ss_pred --------------------------------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHh
Confidence 000112233333322222100 00011111222234
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCC---CCC-CcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc---
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR---PPT-GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS--- 847 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~---~~~-gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~--- 847 (1086)
..|+||+++++.+.+.+.+. +.|+. .|. .+||+||||||||++|+++|..++.+++.++++++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 67899999999998887642 23332 233 4899999999999999999999999999999988643
Q ss_pred ---------ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------
Q 001395 848 ---------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------- 909 (1086)
Q Consensus 848 ---------~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------- 909 (1086)
.|+|..+. ..+...++....+||||||||.+ +..+++.|++.||...
T Consensus 526 ~~~lig~~~gyvg~~~~--~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQG--GLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred HHHHhcCCCCCcccchh--hHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCccc
Confidence 23443222 23445556677789999999944 6789999999998542
Q ss_pred cCCCEEEEEecCCCC-------------------------CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC---
Q 001395 910 QRVNVTVIAATNRPD-------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--- 961 (1086)
Q Consensus 910 ~~~~v~VI~aTN~p~-------------------------~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~--- 961 (1086)
...+++||+|||... .+.|.++. |||.+|.|.+.+.++..+|++..++++
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred CCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 123688999998641 14566765 999999999999999999999887532
Q ss_pred ----CCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 962 ----PCS---SDVNIRELACL--SEGCTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 962 ----~l~---~d~~l~~La~~--t~g~sgadl~~l~~~A~~~A~~~~ 999 (1086)
++. .+..++.|+.. ...|.+|.|+.++++.....+.+.
T Consensus 669 l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~ 715 (731)
T TIGR02639 669 LNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 715 (731)
T ss_pred HHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHH
Confidence 111 22235566664 335567888888887766665443
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.9e-35 Score=305.44 Aligned_cols=292 Identities=27% Similarity=0.418 Sum_probs=240.0
Q ss_pred HHHHHHHHHHhhhcCCeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEcCC
Q 001395 300 AIKLLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPP 379 (1086)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~ 379 (1086)
+.++....++.+..|-.+..|+++-=.-.=.-..|.|+++.|. +..+++..|.+.+..+
T Consensus 49 n~~~F~~YArdQW~Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~---------------------~~~i~~st~i~vl~~~ 107 (368)
T COG1223 49 NPEVFNIYARDQWLGEVVREGDYLFDTRMFPDYAFKVIRVVPS---------------------GGGIITSTTIFVLETP 107 (368)
T ss_pred CHHHHHHHHHHhhcceeeecCceEeecccccccceeEEEEeCC---------------------CCceecceEEEEecCc
Confidence 4577888899999999999999863221112356999999997 4455555554444322
Q ss_pred chhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHH
Q 001395 380 LNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTS 459 (1086)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTt 459 (1086)
+.... .......|+|++|+++.|...+=++++...++. +|--.|++||||||||||||+
T Consensus 108 -~~~~~-----------------e~~~~it~ddViGqEeAK~kcrli~~yLenPe~---Fg~WAPknVLFyGppGTGKTm 166 (368)
T COG1223 108 -REEDR-----------------EIISDITLDDVIGQEEAKRKCRLIMEYLENPER---FGDWAPKNVLFYGPPGTGKTM 166 (368)
T ss_pred -chhhh-----------------hhhccccHhhhhchHHHHHHHHHHHHHhhChHH---hcccCcceeEEECCCCccHHH
Confidence 11110 012234568999999999999999888866676 455569999999999999999
Q ss_pred HHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC-chhHHHHHHHHHHHh
Q 001395 460 LARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-EELSQRMVATLLNLM 538 (1086)
Q Consensus 460 LAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~rv~~~Ll~lL 538 (1086)
+|+++|++...+++.++..++++.|+|+..++++++|+.|+..+|||+||||+|+|+-.|.-+. ......+++.||+.|
T Consensus 167 ~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel 246 (368)
T COG1223 167 MAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL 246 (368)
T ss_pred HHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999987664321 112467899999999
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
|++..+.+|+.|++||+++.+|+++|+ ||..+|+| ..|+.++|.+|++.+.+.+++.+. ..++
T Consensus 247 Dgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF--------------~LP~~eEr~~ile~y~k~~Plpv~-~~~~ 309 (368)
T COG1223 247 DGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEF--------------KLPNDEERLEILEYYAKKFPLPVD-ADLR 309 (368)
T ss_pred cCcccCCceEEEeecCChhhcCHHHHh--hhhheeee--------------eCCChHHHHHHHHHHHHhCCCccc-cCHH
Confidence 999999999999999999999999999 99999999 889999999999999999988754 4499
Q ss_pred HHHHHcCCCcHHHHHH-HHHHHHHHHHHHhccc
Q 001395 619 YLSMATHGFVGADLAA-LCNEAALVCLRRYSKI 650 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~-L~~eA~~~a~rr~~~~ 650 (1086)
.++..|.||+|+||.. +++.|..+|+..-...
T Consensus 310 ~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 310 YLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999999999999874 7788888888764443
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1e-34 Score=336.00 Aligned_cols=249 Identities=48% Similarity=0.790 Sum_probs=227.6
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
.+.|.+.|+|++|++++++++++.+.+++.+++.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.+.++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 847 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
.+|+|+....++.+|..++...|+||||||+|.++..+.....+ .....+.+.+++.++++.....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998776543222 12234566778888887766678999999999999
Q ss_pred CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001395 926 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 1005 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~I 1005 (1086)
+|++++||||||+.|+|+.|+.++|.+||+.++.++.+..++++..++..++||+|+||+++|++|++.|+++. ...|
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~--~~~i 351 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE--RDYV 351 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCcc
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999885 5679
Q ss_pred CHHHHHHHHHhh
Q 001395 1006 TMQHLKTAIRHV 1017 (1086)
Q Consensus 1006 t~~d~~~al~~~ 1017 (1086)
+.+||.+|+.++
T Consensus 352 ~~~d~~~a~~~~ 363 (364)
T TIGR01242 352 TMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 44
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=335.24 Aligned_cols=252 Identities=36% Similarity=0.608 Sum_probs=223.1
Q ss_pred cCCccccc--cccchhHHH-HHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-cEEEEeCCc
Q 001395 769 VPKVKWED--VGGQREVKT-QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-NFLAVKGPE 844 (1086)
Q Consensus 769 ~p~v~~~d--i~G~e~vk~-~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-~fi~v~~se 844 (1086)
.|+..|++ |+|++.--. -.++++....--|+..+++|+..-+|+|||||||||||++||.|.+.+++ +--.|++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 35566666 467765433 34455555556689999999999999999999999999999999999864 556799999
Q ss_pred cccccccccHHHHHHHHHHHHhc--------CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEE
Q 001395 845 LFSKWVGESEKAVRSLFAKARAN--------APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 916 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~--------~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~V 916 (1086)
++++|||+++.++|.+|+.|... .--||+|||||+++..||...++.++++.++||||.-|||.....+++|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILV 372 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILV 372 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEE
Confidence 99999999999999999998642 1239999999999999999998899999999999999999999999999
Q ss_pred EEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC----CCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 917 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CSSDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 917 I~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~----l~~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
|+-|||.|+||+||+|||||.-.+++.+||+..|.+|+++|++++. +..|+|+.+||..|..|||++|+.+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997763 568999999999999999999999999999
Q ss_pred HHHHHHhcCC-------------CCCCHHHHHHHHHhhCCC
Q 001395 993 ISAIEENLDA-------------SRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 993 ~~A~~~~~~~-------------~~It~~d~~~al~~~~p~ 1020 (1086)
..|+.+.+.. -.|+++||..|+..++|.
T Consensus 453 S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred HHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 9999887533 258999999999999997
No 45
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=334.77 Aligned_cols=265 Identities=35% Similarity=0.546 Sum_probs=222.8
Q ss_pred EcCCceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCe
Q 001395 368 INHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKG 446 (1086)
Q Consensus 368 i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~ 446 (1086)
+.+.+.|.+..........++....+.... ......+...|++|+|++.+++.|++.++.+.. ++.|..+|+.++++
T Consensus 104 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkg 181 (398)
T PTZ00454 104 LKPNASVALHRHSHAVVDILPPEADSSIQL--LQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRG 181 (398)
T ss_pred CCCCCEEEeeccchhHHHhccccccchhhh--hcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCce
Confidence 345566666655444444333332222111 112234455679999999999999999998843 58899999999999
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC---
Q 001395 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG--- 523 (1086)
Q Consensus 447 vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~--- 523 (1086)
+|||||||||||++|+++|++++.+|+.+.++++..+|.|+.++.++.+|+.|....|+||||||+|.++.++.+..
T Consensus 182 vLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~ 261 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGA 261 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764332
Q ss_pred chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 524 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
+....+++.+|++.|+++....+++||++||+++.+||+++||||||++|++ +.|+.++|.+||+.
T Consensus 262 d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~--------------~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 262 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF--------------PLPDRRQKRLIFQT 327 (398)
T ss_pred cHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEe--------------CCcCHHHHHHHHHH
Confidence 2345677888999999988788999999999999999999999999999999 99999999999999
Q ss_pred HHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 604 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 604 ~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
++.+++.. .+.+++.++..|+||+|+||.++|++|++.|+++...
T Consensus 328 ~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~ 372 (398)
T PTZ00454 328 ITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRY 372 (398)
T ss_pred HHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99887754 5678999999999999999999999999999988544
No 46
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-36 Score=321.00 Aligned_cols=246 Identities=39% Similarity=0.672 Sum_probs=223.7
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
..+++|++++|...+..++++.++.|+.++++|.++|+.+|++++||||||||||++|+++|..++.+|+.+..+++.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH---HHHHHhccccCCCEEEEEecCCCCC
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ---LLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~---LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|+|++.+.+|+.|+.|+...|||||+||||++++.|..... .....++.+ |+++|++......|-+|+|||+|+.
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~T--s~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGT--SSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecccc--chhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999998854433 234444444 4555677777789999999999999
Q ss_pred CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001395 926 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 1005 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~I 1005 (1086)
|||+|+||||+|+.+.+|+|+...|..|++.|...+.....++.+.+.+..+||.|+|+++.|++|.+.|+++. ...+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~--~~~v 361 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE--RDEV 361 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh--hHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999998876 4457
Q ss_pred CHHHHHHHHHhhC
Q 001395 1006 TMQHLKTAIRHVQ 1018 (1086)
Q Consensus 1006 t~~d~~~al~~~~ 1018 (1086)
-.++|..++.++.
T Consensus 362 l~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 362 LHEDFMKLVRKQA 374 (388)
T ss_pred hHHHHHHHHHHHH
Confidence 7888888877653
No 47
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.3e-34 Score=338.32 Aligned_cols=249 Identities=39% Similarity=0.687 Sum_probs=213.1
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc----------
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 836 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~---------- 836 (1086)
.+.|+++|+||+|++..++++++.+.+|+.+++.|+.+|+.+|+|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 4578999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred EEEEeCCccccccccccHHHHHHHHHHHHhc----CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCC
Q 001395 837 FLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 912 (1086)
Q Consensus 837 fi~v~~sel~~~~vGese~~ir~lf~~A~~~----~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~ 912 (1086)
|+.+++++++++|+|++++.++.+|..|+.. .|+||||||+|.++..|+.... .+...+++++||+.||++....
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-chHHHHHHHHHHHHhcccccCC
Confidence 7778889999999999999999999998764 6999999999999988864322 2345678899999999998778
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc-CCCC---------CcccHHHHHHH-------
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-IPCS---------SDVNIRELACL------- 975 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~-~~l~---------~d~~l~~La~~------- 975 (1086)
+++||+|||+++.||||++||||||+.|+|++|+.++|.+||+.++.. +++. ...++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999864 4441 11122233221
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHh
Q 001395 976 ----------------------SEGCTGADISLICREAAISAIEENLD--ASRITMQHLKTAIRH 1016 (1086)
Q Consensus 976 ----------------------t~g~sgadl~~l~~~A~~~A~~~~~~--~~~It~~d~~~al~~ 1016 (1086)
++.+||++|+++|.+|...|+.+.+. ...|+++|+..|+..
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 45688999999999999999988653 246889999888765
No 48
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.7e-34 Score=346.44 Aligned_cols=245 Identities=40% Similarity=0.679 Sum_probs=225.3
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
..++|+|++|++++++++.+.+.+ +++++.|..+|...++|+||+||||||||++|+++|++.+.+|+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 467999999999999999998876 7888999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCC-CCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCCh
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 928 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~-~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~ 928 (1086)
+|.....++.+|..|+...||||||||||.++..|+.... .......++++||.+||+.....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 9988899999999999999999999999999887754321 223345789999999999877889999999999999999
Q ss_pred hhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 001395 929 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 1008 (1086)
Q Consensus 929 aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~ 1008 (1086)
+++||||||+.|+|++|+.++|.+||+.++++.++..+.++..+|..+.||+|+||+++|++|+..|.++. ...|+.+
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--~~~It~~ 414 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--KATITMK 414 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--CCCcCHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999988775 5679999
Q ss_pred HHHHHHHhh
Q 001395 1009 HLKTAIRHV 1017 (1086)
Q Consensus 1009 d~~~al~~~ 1017 (1086)
||+.|+.++
T Consensus 415 dl~~Ai~rv 423 (638)
T CHL00176 415 EIDTAIDRV 423 (638)
T ss_pred HHHHHHHHH
Confidence 999999886
No 49
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-32 Score=338.94 Aligned_cols=447 Identities=19% Similarity=0.262 Sum_probs=298.0
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEccc
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGP 478 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~s 478 (1086)
.++.++|.++++.++.+++... ...++||+||||||||++|+++|..+ +..++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 4578999999999888876443 35678999999999999999999764 5566777766
Q ss_pred ccc--cccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 479 EVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 479 ~l~--s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.++ .+|.|+.+.+++.+|+.+....++||||||||.|++.+...+.+ .. +.++|..+..++.+.+|++||..
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d----~~nlLkp~L~~g~i~vIgATt~~ 325 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VD----AANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HH----HHHHHHHHHhCCCeEEEecCChH
Confidence 666 45889999999999999888888999999999998776432222 12 22333444457889999999986
Q ss_pred C-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCc----cccchHHHHHHHHHcCC-
Q 001395 557 D-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHG- 626 (1086)
Q Consensus 557 d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~----~~l~d~~l~~La~~t~G- 626 (1086)
+ ..|++|.| ||+ .|.| +.|+.+++.+||+.+...+. ..+.+..+...+..+..
T Consensus 326 E~~~~~~~D~AL~r--RFq-~I~v--------------~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 326 EFSNIFEKDRALAR--RFQ-KIDI--------------TEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred HHHHHhhccHHHHh--hCc-EEEe--------------CCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 5 57999999 996 6888 99999999999998766543 44677777777665544
Q ss_pred ----CcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCc
Q 001395 627 ----FVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLP 702 (1086)
Q Consensus 627 ----fsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1086)
+.+.....++++|+... |..+... ......
T Consensus 389 i~~r~lPdKaidlldea~a~~--~~~~~~~---------------~~~~v~----------------------------- 422 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARA--RLMPVSK---------------RKKTVN----------------------------- 422 (758)
T ss_pred ccCccChHHHHHHHHHHHHhh--ccCcccc---------------cccccC-----------------------------
Confidence 44667778888887543 1111000 000000
Q ss_pred cccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchh
Q 001395 703 TSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQRE 782 (1086)
Q Consensus 703 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~ 782 (1086)
...+.++...+.. .+ ...+...+- ..+. .....--..|+||++
T Consensus 423 ----------~~~i~~v~~~~tg-ip-------------~~~~~~~~~-~~l~------------~l~~~L~~~ViGQ~~ 465 (758)
T PRK11034 423 ----------VADIESVVARIAR-IP-------------EKSVSQSDR-DTLK------------NLGDRLKMLVFGQDK 465 (758)
T ss_pred ----------hhhHHHHHHHHhC-CC-------------hhhhhhhHH-HHHH------------HHHHHhcceEeCcHH
Confidence 0011111111110 00 000111110 0010 011111246899999
Q ss_pred HHHHHHHHHhcchhcHHHHHhhCC----CCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc-----c-----
Q 001395 783 VKTQLMEAVEWPQKHQEAFKRIGT----RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-----K----- 848 (1086)
Q Consensus 783 vk~~L~e~i~~~l~~~~~~~~lg~----~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~-----~----- 848 (1086)
+++.|.+.+.... .|+ +|...+||+||||||||++|+++|..++.+|+.++++++.. +
T Consensus 466 ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 466 AIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred HHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 9999999987431 122 22345999999999999999999999999999999988632 2
Q ss_pred --cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEE
Q 001395 849 --WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVI 917 (1086)
Q Consensus 849 --~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI 917 (1086)
|+|.... ..+.+..+....+||||||||.+ +..+++.|++.||... ...+++||
T Consensus 538 ~gyvg~~~~--g~L~~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 538 PGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCccccccc--chHHHHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 3332111 12334445566689999999954 5679999999997432 12478899
Q ss_pred EecCCC-------------------------CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC-------CCC-
Q 001395 918 AATNRP-------------------------DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS- 964 (1086)
Q Consensus 918 ~aTN~p-------------------------~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~-------~l~- 964 (1086)
+|||.- ..+.|+++. |+|.+|.|++.+.++..+|++.++.++ ++.
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l 680 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSL 680 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 999932 124577777 999999999999999999998776422 222
Q ss_pred --CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 001395 965 --SDVNIRELACLS--EGCTGADISLICREAAISAIEE 998 (1086)
Q Consensus 965 --~d~~l~~La~~t--~g~sgadl~~l~~~A~~~A~~~ 998 (1086)
.+.-++.|+... ..|-+|.|+.++++-....+.+
T Consensus 681 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 681 EVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred eECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 222245565433 2344677877777666555443
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=338.64 Aligned_cols=226 Identities=44% Similarity=0.707 Sum_probs=211.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...|.+++|++.+++.+++.++++.. ++.|...++.+++++|||||||||||+||+++|.+++.+|+.+.++++.++|+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 35678999999999999999999843 57788889999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccC
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 565 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r 565 (1086)
|++++.++.+|+.|+...||||||||+|++++.|.........+++.+|+..|+++....+|+||++||+++.+|++++|
T Consensus 318 Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR 397 (494)
T COG0464 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLR 397 (494)
T ss_pred chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcc
Confidence 99999999999999999999999999999999998776666689999999999999999999999999999999999999
Q ss_pred CCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccc-cchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 566 PGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHS-LLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 566 ~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~-l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
|||||+.++| +.||.++|.+|++.+++..... ..+.+++.+++.|.||+|+||..+|++|++.++
T Consensus 398 ~gRfd~~i~v--------------~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 398 PGRFDRLIYV--------------PLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCccceEeec--------------CCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999976653 568899999999999999999999999999987
Q ss_pred HH
Q 001395 645 RR 646 (1086)
Q Consensus 645 rr 646 (1086)
++
T Consensus 464 ~~ 465 (494)
T COG0464 464 RE 465 (494)
T ss_pred HH
Confidence 75
No 51
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8.7e-34 Score=358.04 Aligned_cols=234 Identities=21% Similarity=0.291 Sum_probs=193.2
Q ss_pred HHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc----------cc----------------
Q 001395 798 QEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW----------VG---------------- 851 (1086)
Q Consensus 798 ~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~----------vG---------------- 851 (1086)
.....++|+.+|+|+||+||||||||+||||+|+++++||+.+++++++.++ +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3456788999999999999999999999999999999999999999998654 12
Q ss_pred ---------------ccHHH--HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---cC
Q 001395 852 ---------------ESEKA--VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---QR 911 (1086)
Q Consensus 852 ---------------ese~~--ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---~~ 911 (1086)
+.+++ ++.+|+.|++++||||||||||+|+... .....+++|+++|++.. ..
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d--------s~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE--------SNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc--------cceehHHHHHHHhccccccCCC
Confidence 22333 8999999999999999999999997541 11234899999999763 35
Q ss_pred CCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHH--HhcCCCCCc-ccHHHHHHHcCCCcHHHHHHHH
Q 001395 912 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIH--LRKIPCSSD-VNIRELACLSEGCTGADISLIC 988 (1086)
Q Consensus 912 ~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~--l~~~~l~~d-~~l~~La~~t~g~sgadl~~l~ 988 (1086)
.+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++..+ .+++.+..+ ++++.+|+.|.||+||||+++|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999999999999988864 455666543 6899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC-----------chhHHHHHHHHHHHHHhcccc
Q 001395 989 REAAISAIEENLDASRITMQHLKTAIRHVQPS-----------EIHSYKELSAKFQRLVHSNAE 1041 (1086)
Q Consensus 989 ~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~-----------~~~~~~~~~~~~~~~~~~~~~ 1041 (1086)
++|++.|+++. ...|+.++++.|+.++... ++-.|+...+..+..+.....
T Consensus 1851 NEAaliAirq~--ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~yEiGhAvvq~~L~~~~p 1912 (2281)
T CHL00206 1851 NEALSISITQK--KSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCP 1912 (2281)
T ss_pred HHHHHHHHHcC--CCccCHHHHHHHHHHHHhhhhhcccCcchhhhhhhHHhHHHHHHhccCCCC
Confidence 99999999987 5689999999999875432 233566666655555544443
No 52
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-34 Score=324.98 Aligned_cols=268 Identities=37% Similarity=0.629 Sum_probs=238.0
Q ss_pred hhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 761 AMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 761 ~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
.+.|+....+++.|+|+.|++.+|+.+.+.+.||...++.|..+ ..+.+|+||.||||||||+|++|||.++++.|+.+
T Consensus 139 i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~i 217 (428)
T KOG0740|consen 139 IRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNI 217 (428)
T ss_pred HHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeec
Confidence 34566666788999999999999999999999999999999865 46678999999999999999999999999999999
Q ss_pred eCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--cCCCEEEEE
Q 001395 841 KGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIA 918 (1086)
Q Consensus 841 ~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~~~~v~VI~ 918 (1086)
+++.|.++|+|++++.+|.+|..|+..+|+|+|+||||+++..|.+ ...+...++..++|..+++.. ..++|+||+
T Consensus 218 SassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~--~e~e~srr~ktefLiq~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 218 SASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD--NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIG 295 (428)
T ss_pred cHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC--cccccchhhhhHHHhhhccccCCCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999933 334678899999999988764 356899999
Q ss_pred ecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 919 ATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP-CSSDVNIRELACLSEGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 919 aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~-l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~ 997 (1086)
|||+|+.+|.|++| ||.+++|+|+|+.+.|..+|+..+.+.+ ...+.+++.|++.|+||+|.||.++|.+|++.-++
T Consensus 296 aTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 296 ATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred cCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 99999999999999 9999999999999999999999998774 33668899999999999999999999999998877
Q ss_pred HhcC-----------CCCCCHHHHHHHHHhhCCC----chhHHHHHHHHHH
Q 001395 998 ENLD-----------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 1033 (1086)
Q Consensus 998 ~~~~-----------~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~~ 1033 (1086)
+... ...++..||..++..++|+ ..+.|.+|...|.
T Consensus 374 ~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg 424 (428)
T KOG0740|consen 374 ELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFG 424 (428)
T ss_pred hcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhc
Confidence 6533 2468899999999999987 4567777776653
No 53
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.8e-33 Score=324.71 Aligned_cols=225 Identities=40% Similarity=0.652 Sum_probs=202.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...+++|+|++++++.|++++..+.. ++.|..+|+.+++++|||||||||||++|+++|++++.+|+.++++++...|.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI 206 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhc
Confidence 45568999999999999999998743 58889999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC---chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
|+.++.++.+|+.+....|+||||||+|.+++.+.... .....+.+.+|+..++++...+++.||+|||+++.+|++
T Consensus 207 g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~a 286 (389)
T PRK03992 207 GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPA 286 (389)
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHH
Confidence 99999999999999999999999999999998765433 223455667788888887777899999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
++||||||+.|+| +.|+.++|.+||+.+++++... .+.++..++..|+||+|+||.++|++|++.
T Consensus 287 llRpgRfd~~I~v--------------~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~ 351 (389)
T PRK03992 287 ILRPGRFDRIIEV--------------PLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMF 351 (389)
T ss_pred HcCCccCceEEEE--------------CCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999887654 456789999999999999999999999999
Q ss_pred HHHH
Q 001395 643 CLRR 646 (1086)
Q Consensus 643 a~rr 646 (1086)
|+++
T Consensus 352 a~~~ 355 (389)
T PRK03992 352 AIRD 355 (389)
T ss_pred HHHc
Confidence 8764
No 54
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=6.9e-33 Score=323.32 Aligned_cols=231 Identities=37% Similarity=0.613 Sum_probs=207.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
+...|++|+|++.+++.|+++++.+.. ++.|..+|+.+++++|||||||||||++|+++|++++.+|+.+.++++.++|
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 345678999999999999999998743 5788999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCc
Q 001395 485 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idp 561 (1086)
.|+.+..++.+|+.|..+.|+||||||||.++.++... +.....+.+.+|+..|+++....++.||++||+++.+|+
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 99999999999999999999999999999999876432 233345667788888888877788999999999999999
Q ss_pred cccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 562 aL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
+++|+||||+.|+| +.|+.++|.+||+.++.++... .+.+++.++..++||+|+||.++|++|++
T Consensus 338 aLlRpGRfd~~I~~--------------~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 338 ALIRPGRIDRKIEF--------------PNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGL 402 (438)
T ss_pred HhccCCeeEEEEEe--------------CCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999887654 56788999999999999999999999999
Q ss_pred HHHHHhcccc
Q 001395 642 VCLRRYSKIQ 651 (1086)
Q Consensus 642 ~a~rr~~~~~ 651 (1086)
.|+++.....
T Consensus 403 ~Alr~~r~~V 412 (438)
T PTZ00361 403 LALRERRMKV 412 (438)
T ss_pred HHHHhcCCcc
Confidence 9998865443
No 55
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.9e-33 Score=349.15 Aligned_cols=227 Identities=44% Similarity=0.713 Sum_probs=209.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...|++|+|++.+++.|++.+.++. .++.+..+|+.+++++|||||||||||++|+++|++++.+|+.++++++.++|+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 3467999999999999999999873 458889999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC-CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG-GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
|++++.++.+|+.|+...||||||||+|.+++.++.. ......+++.+|+..||++....+++||+|||+++.+|++++
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~all 608 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALL 608 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhc
Confidence 9999999999999999999999999999999887643 234568899999999999988889999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
||||||+.|++ +.|+.++|.+||+.++++.++. .+.+++.+|+.|+||+|+||.++|++|++.|+
T Consensus 609 RpgRfd~~i~v--------------~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~ 673 (733)
T TIGR01243 609 RPGRFDRLILV--------------PPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAAL 673 (733)
T ss_pred CCCccceEEEe--------------CCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999887654 56789999999999999999999999999999
Q ss_pred HHhc
Q 001395 645 RRYS 648 (1086)
Q Consensus 645 rr~~ 648 (1086)
++..
T Consensus 674 ~~~~ 677 (733)
T TIGR01243 674 RESI 677 (733)
T ss_pred HHHh
Confidence 8754
No 56
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=334.20 Aligned_cols=234 Identities=38% Similarity=0.619 Sum_probs=217.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
...|.|+.|.++.|+++.|+|...+-+..|..+|..-|+|+||+||||||||+|||++|.+.+++|+.+++++++..++|
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG 225 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 225 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence 35678999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCC---CCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~---~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL 563 (1086)
-...+++++|.+|+.++||||||||||++...|. .++.+.....+++|+..||++..+.+|++|++||+||-+|+||
T Consensus 226 vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~AL 305 (596)
T COG0465 226 VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPAL 305 (596)
T ss_pred CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhh
Confidence 9999999999999999999999999999998875 3455566789999999999999888999999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+|||||||.|.+ +.||-..|.+|++.|.++.++. .++++..+|+.|.||+|+|+.+++++|+..|
T Consensus 306 lRpgRFDRqI~V--------------~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~a 370 (596)
T COG0465 306 LRPGRFDRQILV--------------ELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLA 370 (596)
T ss_pred cCCCCcceeeec--------------CCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHH
Confidence 999999999999 8999999999999999988876 7788899999999999999999999999999
Q ss_pred HHHhcccccccc
Q 001395 644 LRRYSKIQTSSD 655 (1086)
Q Consensus 644 ~rr~~~~~~~~~ 655 (1086)
.|+......+.+
T Consensus 371 ar~n~~~i~~~~ 382 (596)
T COG0465 371 ARRNKKEITMRD 382 (596)
T ss_pred HHhcCeeEeccc
Confidence 998766554443
No 57
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=343.86 Aligned_cols=249 Identities=43% Similarity=0.705 Sum_probs=227.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPE 844 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~se 844 (1086)
..+.|++++|++.++++|+|.+..|+.||+.|..+++.+|+|+||+||||||||++|+++|..+ ...|+.-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4689999999999999999999999999999999999999999999999999999999998875 46788889999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 845 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
..++|+|+.+++++.+|+.|+...|.||||||||.|++.|..... ..+..++.+||..|||+..++.|+||+|||||+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 999999999999999999999999999999999999998855433 456789999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC--
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD-- 1001 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~-- 1001 (1086)
.+||||.||||||+.++|++|+.+.|.+|+.+|.++..-. ...-+..||+.+.||-|+||+++|.+|++.++++...
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 9999999999999999999999999999999999876522 3445789999999999999999999999999987531
Q ss_pred ------------CCCCCHHHHHHHHHhhCCC
Q 001395 1002 ------------ASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1002 ------------~~~It~~d~~~al~~~~p~ 1020 (1086)
...|..+||..|+.++.|+
T Consensus 498 y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 498 YSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred ecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 1248899999999987765
No 58
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.7e-32 Score=334.05 Aligned_cols=246 Identities=39% Similarity=0.704 Sum_probs=225.5
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 850 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~v 850 (1086)
...|+|+.|.+..++++.+.+.+ +..++.+..++...++|++|+||||||||++|+++|++++.+|+.++++++...++
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 35789999999999999999987 56677888889999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChh
Q 001395 851 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 929 (1086)
Q Consensus 851 Gese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~a 929 (1086)
|.....++.+|..|+..+||||||||+|.++..|+... .+.....+++++||.+||+.....+++||+|||+|+.||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999998876432 22234467899999999999888899999999999999999
Q ss_pred hhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 001395 930 LLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 1009 (1086)
Q Consensus 930 LlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d 1009 (1086)
++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||+|+||.++|++|+..|+++. ...|++.|
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--~~~i~~~d 384 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVSMVE 384 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--CCcccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 56799999
Q ss_pred HHHHHHhhCC
Q 001395 1010 LKTAIRHVQP 1019 (1086)
Q Consensus 1010 ~~~al~~~~p 1019 (1086)
|++|+.++.+
T Consensus 385 ~~~a~~~v~~ 394 (644)
T PRK10733 385 FEKAKDKIMM 394 (644)
T ss_pred HHHHHHHHhc
Confidence 9999987754
No 59
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-33 Score=305.22 Aligned_cols=228 Identities=34% Similarity=0.574 Sum_probs=208.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcC-CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLG-LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lg-i~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~ 483 (1086)
...+|+||+||+.+++.+++.|.+|.. ++.|...+ ..|++|||||||||||||++|+++|++.|+.|+.|..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 345789999999999999999998843 56664333 5799999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCC--eeEEeccCCCCCCCc
Q 001395 484 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG--VLVIAATNRPDSIEP 561 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~--viVIatTN~~d~idp 561 (1086)
|+|+.++.++.+|-.|...+|+||||||+|+++..|.....+....+.+++..+.|++...++ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998766778888999999999999977655 999999999999999
Q ss_pred cccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 562 aL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
|++| |+.+.++| +.|+..+|.+||+.+++...+. ++.++..+|..|.||+|.||..+|+.|++
T Consensus 247 AiiR--R~p~rf~V--------------~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 247 AIIR--RLPRRFHV--------------GLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred HHHH--hCcceeee--------------CCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 9999 99999999 9999999999999999987766 78899999999999999999999999999
Q ss_pred HHHHHhccc
Q 001395 642 VCLRRYSKI 650 (1086)
Q Consensus 642 ~a~rr~~~~ 650 (1086)
..+|.+...
T Consensus 310 ~~ire~~~~ 318 (386)
T KOG0737|consen 310 RPIRELLVS 318 (386)
T ss_pred hHHHHHHHh
Confidence 999987654
No 60
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.9e-32 Score=321.36 Aligned_cols=220 Identities=26% Similarity=0.405 Sum_probs=194.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++|+|++.+|+.+++.... +......+|+++++|+|||||||||||++|+++|++++.+++.++++.+.++|+|+
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~--~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe 302 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTS--FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE 302 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHH--hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh
Confidence 3568999999999999886543 23445678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC-CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCC
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKD-GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRP 566 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~-~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~ 566 (1086)
++..++.+|+.|....||||||||||.++..+.. +......+++.+|+..|+. ...+++||+|||+++.+|++++|+
T Consensus 303 se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~ 380 (489)
T CHL00195 303 SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRK 380 (489)
T ss_pred HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCC
Confidence 9999999999999999999999999999875432 3344678889999999985 456799999999999999999999
Q ss_pred CCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccc-cchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 567 GRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHS-LLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 567 GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~-l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~r 645 (1086)
||||+.++| +.|+.++|.+||+.++.+.... ..+.+++.+++.|+||+|+||.++|.+|+..|+.
T Consensus 381 GRFD~~i~v--------------~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 381 GRFDEIFFL--------------DLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred CcCCeEEEe--------------CCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999886533 4577899999999999999999999999877743
No 61
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=4.1e-31 Score=317.35 Aligned_cols=225 Identities=39% Similarity=0.637 Sum_probs=205.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++|+|++++++++++++.....++.+..+|..+++++|||||||||||++|+++|++++.+|+.++++++.+.+.|+
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~ 131 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 131 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcc
Confidence 45789999999999999999887567888889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
.++.++.+|+.|....|+||||||||.++.++..+ ..+...+++.+|+..||++...++++||+|||+++.+|++++
T Consensus 132 ~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~ 211 (495)
T TIGR01241 132 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALL 211 (495)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHh
Confidence 99999999999999999999999999999877542 234456888999999999988889999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
||||||+.|++ +.|+.++|.+|++.+++..+.. .+.++..++..+.||+++||.++|++|+..|.
T Consensus 212 r~gRfd~~i~i--------------~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~ 276 (495)
T TIGR01241 212 RPGRFDRQVVV--------------DLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAA 276 (495)
T ss_pred cCCcceEEEEc--------------CCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999876554 56789999999999999999999999998887
Q ss_pred HHh
Q 001395 645 RRY 647 (1086)
Q Consensus 645 rr~ 647 (1086)
++.
T Consensus 277 ~~~ 279 (495)
T TIGR01241 277 RKN 279 (495)
T ss_pred HcC
Confidence 754
No 62
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-32 Score=291.15 Aligned_cols=225 Identities=38% Similarity=0.622 Sum_probs=199.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
..+|+.++|+..++.++++.|+.+.. +++|.++|+.+|++++||||||||||.+|+++|..+|++|+.+..+.+.++|.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 45679999999999999999999854 58889999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhH---HHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELS---QRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~---~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
||+.+.+++.|..|+...|||||+||||++.+.+...+.... ++.+-.|++.|+++...++|-+|+|||+++.++|+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 999999999999999999999999999999988755544334 45555566667777778899999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
|.||||+|+.+++ |.|+...|+.|++.+....... -+.+.+.+.+..+||.|+|+++.|+||.+.
T Consensus 288 LlRpGRldrk~~i--------------Plpne~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~f~gad~rn~~tEag~F 352 (388)
T KOG0651|consen 288 LLRPGRLDRKVEI--------------PLPNEQARLGILKIHVQPIDFH-GEIDDEAILKLVDGFNGADLRNVCTEAGMF 352 (388)
T ss_pred hcCCccccceecc--------------CCcchhhceeeEeecccccccc-ccccHHHHHHHHhccChHHHhhhccccccc
Confidence 9999999999999 9999999999999887665432 344577888899999999999999999988
Q ss_pred HHHH
Q 001395 643 CLRR 646 (1086)
Q Consensus 643 a~rr 646 (1086)
|++.
T Consensus 353 a~~~ 356 (388)
T KOG0651|consen 353 AIPE 356 (388)
T ss_pred ccch
Confidence 7654
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=3.3e-29 Score=315.05 Aligned_cols=511 Identities=20% Similarity=0.287 Sum_probs=306.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++++|.++++.++.+++... ...+++|+||||||||++|+.+|+.+ +.+++.++.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 45689999999866666554332 34578999999999999999999876 346788888
Q ss_pred ccccc--ccchhhHHHHHHHHHHhhc-CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 478 PEVVS--QNYGESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 478 s~l~s--~~~Gese~~l~~vf~~a~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
..+.. .|.|+.+.+++.+|+.+.. ..++||||||+|.+.+.+...+.. .+. ++|.....++.+.+|++|+
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~----n~Lkp~l~~G~l~~IgaTT 324 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAA----NLLKPALARGELRTIAATT 324 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHH----HHhhHHhhCCCeEEEEecC
Confidence 77763 6889999999999998864 467899999999998765432221 122 2333344578999999998
Q ss_pred CCC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC----ccccchHHHHHHHHHcC
Q 001395 555 RPD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMATH 625 (1086)
Q Consensus 555 ~~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~----~~~l~d~~l~~La~~t~ 625 (1086)
..+ .+|++|+| ||. .|.+ +.|+.+++..||+.+.+.+ ++.+++..+..++..++
T Consensus 325 ~~e~~~~~~~d~AL~r--Rf~-~i~v--------------~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 325 WAEYKKYFEKDPALTR--RFQ-VVKV--------------EEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSH 387 (852)
T ss_pred HHHHhhhhhccHHHHH--hCe-EEEe--------------CCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcc
Confidence 754 48999999 995 7888 9999999999988776543 34578999999999988
Q ss_pred CCc-----HHHHHHHHHHHHHHHHHHh-ccccccccccccccccccccCCccccccccccccccccccccccccCCCCCC
Q 001395 626 GFV-----GADLAALCNEAALVCLRRY-SKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTS 699 (1086)
Q Consensus 626 Gfs-----gaDL~~L~~eA~~~a~rr~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1086)
+|. +.....|+++|+...-... .......++... ..... ...+ ..... ........
T Consensus 388 ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~---~~~~~----~~~~---------~~~~~--~~~~~~~~ 449 (852)
T TIGR03345 388 RYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRR---IAALE----LELD---------ALERE--AALGADHD 449 (852)
T ss_pred cccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHH---HHHHH----HHHH---------HHhhh--hccccchH
Confidence 875 4445667788765432211 000000000000 00000 0000 00000 00000000
Q ss_pred CCccccccCCcccccchHHHHhhccCCCC--------------CCC----CCCccc----------------cccccccc
Q 001395 700 DLPTSLLSSSLPLRGTVSEIADNFHNGVS--------------DSS----GGMFMS----------------EKGCALKL 745 (1086)
Q Consensus 700 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~--------------~~~----~~~~~~----------------~~~~~~~v 745 (1086)
.....+......+...++.+...+..... ... ...... .......|
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 529 (852)
T TIGR03345 450 ERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEV 529 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhcccccccee
Confidence 00000000000000011111111100000 000 000000 00001124
Q ss_pred cHHHHHHHHHhhCchhh-------hhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCC---CCCCC-cce
Q 001395 746 ELVDFEKARMKVRPSAM-------REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGT---RPPTG-ILM 814 (1086)
Q Consensus 746 t~~Df~~Al~~~~ps~~-------re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~---~~~~g-vLL 814 (1086)
+.+|+...+.+...-.. .+........--..|+||+.++..+.+.+... +.|+ ..|.+ +||
T Consensus 530 ~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf 601 (852)
T TIGR03345 530 DAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLL 601 (852)
T ss_pred cHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEE
Confidence 44444444333321100 00111111122256899999999998888642 1222 23444 899
Q ss_pred eCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccc------------ccccccHHHHHHHHHHHHhcCCeEEEEecCch
Q 001395 815 FGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS------------KWVGESEKAVRSLFAKARANAPSIIFFDEIDG 879 (1086)
Q Consensus 815 ~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~------------~~vGese~~ir~lf~~A~~~~p~ILflDEid~ 879 (1086)
+||||||||.+|+++|..+ ...++.++++++.. .|+|..+.. .+....+....+||+||||+
T Consensus 602 ~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEie- 678 (852)
T TIGR03345 602 VGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVE- 678 (852)
T ss_pred ECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechh-
Confidence 9999999999999999987 46889999887632 255544332 23455566778999999998
Q ss_pred hhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEEEecCCCC--------------------------
Q 001395 880 LAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD-------------------------- 924 (1086)
Q Consensus 880 L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI~aTN~p~-------------------------- 924 (1086)
..+..+++.|++.|+... ...+.+||+|||...
T Consensus 679 ------------ka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (852)
T TIGR03345 679 ------------KAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPE 746 (852)
T ss_pred ------------hcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHH
Confidence 346788999999997543 124789999998421
Q ss_pred ---CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC--------CCC---CcccHHHHHHHcCC--CcHHHHHHHH
Q 001395 925 ---KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--------PCS---SDVNIRELACLSEG--CTGADISLIC 988 (1086)
Q Consensus 925 ---~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~--------~l~---~d~~l~~La~~t~g--~sgadl~~l~ 988 (1086)
.+.|+++. |++ +|.|.+.+.++..+|++..+... ++. .+.-++.|+....+ |.+|.++.++
T Consensus 747 ~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~I 823 (852)
T TIGR03345 747 LLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAIL 823 (852)
T ss_pred HHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHH
Confidence 13567776 997 89999999999999998776442 222 22235667766643 5678898888
Q ss_pred HHHHHHHHHH
Q 001395 989 REAAISAIEE 998 (1086)
Q Consensus 989 ~~A~~~A~~~ 998 (1086)
+.-...++.+
T Consensus 824 e~~i~~~la~ 833 (852)
T TIGR03345 824 NQTLLPELSR 833 (852)
T ss_pred HHHHHHHHHH
Confidence 8766655544
No 64
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=7.3e-29 Score=313.26 Aligned_cols=498 Identities=20% Similarity=0.265 Sum_probs=310.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..++.++|.++++.++.+++... ...+++|+||||||||++|+.+|..+ +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 34678999999999998886443 45689999999999999999999876 468999999
Q ss_pred cccc--cccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
..++ .+|.|+.+.+++.+|+.+....++||||||+|.+.+.+...++. .+. ++|.....++.+.+|++|+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a----~lLkp~l~rg~l~~IgaTt~ 316 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAA----NILKPALARGELQCIGATTL 316 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHH----HHhHHHHhCCCcEEEEeCCH
Confidence 8887 46899999999999999988888999999999998765433321 122 22333335788999999997
Q ss_pred CC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc----CccccchHHHHHHHHHcCC
Q 001395 556 PD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 556 ~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~----~~~~l~d~~l~~La~~t~G 626 (1086)
.+ ..|+++.+ ||. .|.+ +.|+.++...|++.+... .+..+++..+..++..+++
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v--------------~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYV--------------GEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEec--------------CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 64 47899998 896 4666 889999999999876532 2344678889999988888
Q ss_pred CcH-----HHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCC
Q 001395 627 FVG-----ADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDL 701 (1086)
Q Consensus 627 fsg-----aDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1086)
|.+ .....++++|+...-..........+.+...-.....+.. ......+ +...
T Consensus 380 yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~--------------- 438 (821)
T CHL00095 380 YIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKD--EAIREQD----FETA--------------- 438 (821)
T ss_pred cCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH--HHHhCcc----hHHH---------------
Confidence 753 4455677777654321110000000000000000000000 0000000 0000
Q ss_pred ccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhh-------hhhhhcCCccc
Q 001395 702 PTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMR-------EVILEVPKVKW 774 (1086)
Q Consensus 702 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~r-------e~~~e~p~v~~ 774 (1086)
..+......++..+..+...+..... .......|+.+|+...+.....-... +........--
T Consensus 439 -~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~ 508 (821)
T CHL00095 439 -KQLRDREMEVRAQIAAIIQSKKTEEE---------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLH 508 (821)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhc---------ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhc
Confidence 00000000011111112221111000 01112457777777766554421111 11111222223
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCC---CCCC-CcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGT---RPPT-GILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 847 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~---~~~~-gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~ 847 (1086)
+.|+||+++++.+...+... +.|+ ..|. .+||+||+|||||++|++||..+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 56899999999998888642 2222 2233 48999999999999999999986 46899999887632
Q ss_pred -----c-------cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc------
Q 001395 848 -----K-------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 909 (1086)
Q Consensus 848 -----~-------~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~------ 909 (1086)
+ |+|..+. ..+....+....+||+|||+|. .+..+++.|++.|+...
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~--~~l~~~~~~~p~~VvllDeiek-------------a~~~v~~~Llq~le~g~~~d~~g 645 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTVVLFDEIEK-------------AHPDIFNLLLQILDDGRLTDSKG 645 (821)
T ss_pred cccHHHhcCCCCcccCcCcc--chHHHHHHhCCCeEEEECChhh-------------CCHHHHHHHHHHhccCceecCCC
Confidence 1 3443222 2345556666668999999994 47789999999998532
Q ss_pred ---cCCCEEEEEecCCCCC-------------------------------------CChhhhCCCCcceEeecCCCCHHH
Q 001395 910 ---QRVNVTVIAATNRPDK-------------------------------------IDPALLRPGRFDRLLYVGPPNETD 949 (1086)
Q Consensus 910 ---~~~~v~VI~aTN~p~~-------------------------------------lD~aLlrpgRFd~~I~~~~P~~~e 949 (1086)
...+.+||+|||.... +.|+++. |+|.+|.|.+.+.++
T Consensus 646 ~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~ 723 (821)
T CHL00095 646 RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKND 723 (821)
T ss_pred cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHH
Confidence 1347899999985311 2345666 999999999999999
Q ss_pred HHHHHHHHHhcC-------CCC---CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHH
Q 001395 950 REEIFRIHLRKI-------PCS---SDVNIRELACLS--EGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 950 R~~Il~~~l~~~-------~l~---~d~~l~~La~~t--~g~sgadl~~l~~~A~~~A~~ 997 (1086)
..+|++..+.++ ++. .+...+.|+... ..|-+|.|+.++++.....+.
T Consensus 724 l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 724 VWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 999998777542 111 112245555542 234467777777665554443
No 65
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=2.9e-30 Score=298.81 Aligned_cols=229 Identities=40% Similarity=0.654 Sum_probs=202.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
+...+++|+|++++++.|++.+..+. .++.|..+|+.+++++|||||||||||++|+++|++++.+|+.+.+.++...|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 34456899999999999999998873 35788999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC---chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCc
Q 001395 485 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idp 561 (1086)
.|+....++.+|+.+....|+||||||+|.++..+.... .....+.+.+++..++++...+++.||+|||+++.+|+
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~ 276 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP 276 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh
Confidence 999999999999999999999999999999987664332 22334566777777787766778999999999999999
Q ss_pred cccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 562 ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 562 aL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
+++|+||||+.|+| +.|+.++|.+|++.++..+... .+.+++.++..+.||+|+||.++|++|++
T Consensus 277 al~r~grfd~~i~v--------------~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~ 341 (364)
T TIGR01242 277 ALLRPGRFDRIIEV--------------PLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGM 341 (364)
T ss_pred hhcCcccCceEEEe--------------CCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999998876644 34678999999999999999999999999
Q ss_pred HHHHHhcc
Q 001395 642 VCLRRYSK 649 (1086)
Q Consensus 642 ~a~rr~~~ 649 (1086)
.|+++...
T Consensus 342 ~a~~~~~~ 349 (364)
T TIGR01242 342 FAIREERD 349 (364)
T ss_pred HHHHhCCC
Confidence 99987543
No 66
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=7.5e-30 Score=301.44 Aligned_cols=188 Identities=35% Similarity=0.633 Sum_probs=168.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------EEE
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------LFT 474 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~----------~i~ 474 (1086)
+...|++|+|++++++.|++.|+.+.. ++.|..+|+.+++++|||||||||||++|+++|++++.+ |+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 345678999999999999999998743 588999999999999999999999999999999998543 677
Q ss_pred EcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCC-CchhHHHHHHHHHHHhhccccCCCeeE
Q 001395 475 VNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDG-GEELSQRMVATLLNLMDGVCRTDGVLV 549 (1086)
Q Consensus 475 I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~-~~~~~~rv~~~Ll~lLd~l~~~~~viV 549 (1086)
+.++++.++|.|++++.++.+|+.++. +.|+||||||+|.++..|+.+ .++...+++.+|++.||++...++++|
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV 336 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV 336 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE
Confidence 888899999999999999999998765 379999999999999887643 345667889999999999988889999
Q ss_pred EeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc
Q 001395 550 IAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG 607 (1086)
Q Consensus 550 IatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~ 607 (1086)
|+|||+++.|||+++||||||++|+| +.|+.++|.+||+.++..
T Consensus 337 I~ATN~~d~LDpALlRpGRfD~~I~~--------------~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 337 IGASNREDMIDPAILRPGRLDVKIRI--------------ERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EeccCChhhCCHhhcCccccceEEEe--------------CCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999 999999999999999864
No 67
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.3e-30 Score=288.39 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=173.3
Q ss_pred cccccc-ccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccc
Q 001395 772 VKWEDV-GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 850 (1086)
Q Consensus 772 v~~~di-~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~v 850 (1086)
.+|+++ +|.--.+.-+...+....+ ..+...++++|.+++||||||||||++|+++|++++.+|+.+++++++++|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 356666 5554444444444332211 2233468999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHh-----cCCeEEEEecCchhhhhcCCCCCCCCccHHHH-HHHHHHHhcc------------ccCC
Q 001395 851 GESEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM-SQLLVELDGL------------HQRV 912 (1086)
Q Consensus 851 Gese~~ir~lf~~A~~-----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~-~~LL~~Ld~~------------~~~~ 912 (1086)
|++++.+|++|..|+. .+||||||||||++++.|+.. +..+..+++ .+|++.||+. ....
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 9999999999999975 469999999999999988632 334445565 7999999863 2355
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCC----CcHHHHHHHH
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG----CTGADISLIC 988 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g----~sgadl~~l~ 988 (1086)
+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++..+. ..++..|+..+.| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 7999999999999999999999999965 5899999999999999998776 5788888888876 4555445555
Q ss_pred HHHHHHHHH
Q 001395 989 REAAISAIE 997 (1086)
Q Consensus 989 ~~A~~~A~~ 997 (1086)
.++....+.
T Consensus 345 d~~v~~~i~ 353 (413)
T PLN00020 345 DDEVRKWIA 353 (413)
T ss_pred HHHHHHHHH
Confidence 555544443
No 68
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=5.2e-30 Score=285.67 Aligned_cols=220 Identities=21% Similarity=0.297 Sum_probs=178.7
Q ss_pred cccccc-CCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 408 QDISKL-GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 408 ~~l~~I-~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
..|+.+ +|+--...-+..++... .+..+..+++++|.+++||||||||||++|+++|+++|++++.++++++.++|+|
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 344555 66665555555444333 4555556889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhc-----CCCeEEEEccchhhccCCCCCCchhHHHH-HHHHHHHhhcc------------ccCCCee
Q 001395 487 ESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRM-VATLLNLMDGV------------CRTDGVL 548 (1086)
Q Consensus 487 ese~~l~~vf~~a~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv-~~~Ll~lLd~l------------~~~~~vi 548 (1086)
++|+.++++|+.|.. .+||||||||||++++.++........++ ..+|+++||+. ....+|+
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999864 57999999999999998875444444455 48999999863 2356799
Q ss_pred EEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC--
Q 001395 549 VIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG-- 626 (1086)
Q Consensus 549 VIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G-- 626 (1086)
||+|||+++.|||+|+|+||||+.+ ..|+.++|.+||+.+++..++ +..++..|+..+.|
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i----------------~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq~ 332 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY----------------WAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQP 332 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee----------------CCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCCC
Confidence 9999999999999999999999965 459999999999999998754 57888999988876
Q ss_pred --CcHHHHHHHHHHHHHHHHHH
Q 001395 627 --FVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 627 --fsgaDL~~L~~eA~~~a~rr 646 (1086)
|.|+--..+.+++...-+.+
T Consensus 333 ~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 333 LDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 56666566666665555443
No 69
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=5.1e-30 Score=312.03 Aligned_cols=227 Identities=37% Similarity=0.606 Sum_probs=205.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|+|++|++++++.+.+++.....++.|..+|...++++||+||||||||++|+++|++++.+|+.++++++...+.|.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~ 259 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGV 259 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhh
Confidence 46789999999999999999887667888899999999999999999999999999999999999999999999889998
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC---CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~---~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
....++.+|+.|....||||||||+|.++..++. ++.+....++.+|+..||++....+++||++||+++.+|++++
T Consensus 260 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALl 339 (638)
T CHL00176 260 GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALL 339 (638)
T ss_pred hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhh
Confidence 8889999999999999999999999999876643 2334456788999999999888889999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
||||||++|.+ +.|+.++|.+||+.+++.... ..+.++..++..+.||+++||.++|++|+..+.
T Consensus 340 RpGRFd~~I~v--------------~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 340 RPGRFDRQITV--------------SLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred ccccCceEEEE--------------CCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999987443 357789999999999999999999999999887
Q ss_pred HHhcc
Q 001395 645 RRYSK 649 (1086)
Q Consensus 645 rr~~~ 649 (1086)
++...
T Consensus 405 r~~~~ 409 (638)
T CHL00176 405 RRKKA 409 (638)
T ss_pred HhCCC
Confidence 76543
No 70
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.97 E-value=2.2e-28 Score=308.63 Aligned_cols=525 Identities=19% Similarity=0.261 Sum_probs=298.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..++.++|.++++.++.+++... ...+++|+||||||||++|+.+|..+ +.+++.++.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 45689999999877776665433 34579999999999999999999987 678889988
Q ss_pred cccc--cccchhhHHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
..+. .+|.|+.+++++.+|+.+. ...++||||||+|.|.+.+...++ ....+ +|.....++.+.+|++|+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~---~d~~~----~lkp~l~~g~l~~IgaTt 315 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGN----MLKPALARGELHCVGATT 315 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc---hhHHH----HhcchhhcCCCeEEEcCC
Confidence 8876 4588999999999999854 457899999999999876543332 11222 233444678999999999
Q ss_pred CCC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCc----cccchHHHHHHHHHcC
Q 001395 555 RPD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATH 625 (1086)
Q Consensus 555 ~~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~----~~l~d~~l~~La~~t~ 625 (1086)
..+ .+|+++.| ||+ .|.+ +.|+.+++..||+.+...+. +.+.+..+...+..++
T Consensus 316 ~~e~r~~~~~d~al~r--Rf~-~i~v--------------~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 316 LDEYRQYIEKDAALER--RFQ-KVFV--------------AEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred CHHHHHHhhhcHHHHh--hCC-EEEe--------------CCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 877 48999999 997 4667 89999999999998775542 3456777777767776
Q ss_pred CCc-----HHHHHHHHHHHHHHHHHHhcccccccccccccccccc---ccC---Cccccccc----cccccccccccccc
Q 001395 626 GFV-----GADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFE---FEG---HSDTMLQD----SDCSRNITESSRDC 690 (1086)
Q Consensus 626 Gfs-----gaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~---~~~---~~~~~l~~----~~~~~~~~~~~~~~ 690 (1086)
+|. +.....++++++...-.... .....+......+. .+. ..+.+... ......++......
T Consensus 379 ry~~~~~~pdkAi~LiD~aaa~~rl~~~---~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~ 455 (857)
T PRK10865 379 RYIADRQLPDKAIDLIDEAASSIRMQID---SKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQY 455 (857)
T ss_pred ccccCCCCChHHHHHHHHHhcccccccc---cChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 654 33344455555432100000 00000000000000 000 00000000 00000000000000
Q ss_pred cccCCCCCCCCccccccCCcccccchHHHHhhccCCCCC--------CCCCCcc----------c-----cccccccccH
Q 001395 691 LDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSD--------SSGGMFM----------S-----EKGCALKLEL 747 (1086)
Q Consensus 691 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~----------~-----~~~~~~~vt~ 747 (1086)
... ..........+ ......+..+..+...+...... ...+... . ...-...|+.
T Consensus 456 ~~L-~eq~k~~k~el-~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 533 (857)
T PRK10865 456 SEL-EEEWKAEKASL-SGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTD 533 (857)
T ss_pred HHH-HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCH
Confidence 000 00000000000 00000000000000000000000 0000000 0 0000023556
Q ss_pred HHHHHHHHhhCchh-------hhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCC---CC-CCcceeC
Q 001395 748 VDFEKARMKVRPSA-------MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR---PP-TGILMFG 816 (1086)
Q Consensus 748 ~Df~~Al~~~~ps~-------~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~---~~-~gvLL~G 816 (1086)
+|+...+.+...-. ..+........-.+.++|++.+++.+...+... +.|+. .| ..+||+|
T Consensus 534 ~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~G 605 (857)
T PRK10865 534 AEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLG 605 (857)
T ss_pred HHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEC
Confidence 66655554433211 111122223334567899999999999888642 11222 22 3489999
Q ss_pred CCCCcchHHHHHHHHHh---CCcEEEEeCCccccc------------cccccHHHHHHHHHHHHhcCCeEEEEecCchhh
Q 001395 817 PPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLA 881 (1086)
Q Consensus 817 PpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~------------~vGese~~ir~lf~~A~~~~p~ILflDEid~L~ 881 (1086)
|+|||||++|++||..+ +.+|+.++++++... |+|..+.. .+....+....+||||||++.
T Consensus 606 p~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g--~l~~~v~~~p~~vLllDEiek-- 681 (857)
T PRK10865 606 PTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEK-- 681 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhH--HHHHHHHhCCCCeEEEeehhh--
Confidence 99999999999999875 568999998876421 22322211 122333444458999999994
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEEEecCCC-------------------------CCCC
Q 001395 882 AIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRP-------------------------DKID 927 (1086)
Q Consensus 882 ~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI~aTN~p-------------------------~~lD 927 (1086)
.+..+++.|++.|+... ...+.+||+|||.. ..+.
T Consensus 682 -----------a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 750 (857)
T PRK10865 682 -----------AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFR 750 (857)
T ss_pred -----------CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccccc
Confidence 36788999999996431 12356799999963 1245
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC-------CCCCccc---HHHHHHHc--CCCcHHHHHHHHHHHHHHH
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCSSDVN---IRELACLS--EGCTGADISLICREAAISA 995 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~-------~l~~d~~---l~~La~~t--~g~sgadl~~l~~~A~~~A 995 (1086)
|+|+. |+|.++.|.+++.++..+|++.++.+. ++.-.++ ++.|+... ..|-+|.|+.+++.-....
T Consensus 751 PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 751 PEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENP 828 (857)
T ss_pred HHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHH
Confidence 78887 999999999999999999988777542 2221222 44454422 1233678888887766555
Q ss_pred HHH
Q 001395 996 IEE 998 (1086)
Q Consensus 996 ~~~ 998 (1086)
+.+
T Consensus 829 la~ 831 (857)
T PRK10865 829 LAQ 831 (857)
T ss_pred HHH
Confidence 443
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97 E-value=8.1e-28 Score=304.57 Aligned_cols=511 Identities=21% Similarity=0.282 Sum_probs=307.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..++.++|.++++.++.+++... ...+++|+||||||||++|+.+|..+ +.+++.++.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 35678999999877776665332 45678999999999999999999875 667888888
Q ss_pred cccc--cccchhhHHHHHHHHHHhhc-CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
..+. .+|.|+.+.+++.+|+.+.. ..++||||||+|.|.+.+...+. ..+. ++|.....++.+.+|++|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~----~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAG----NMLKPALARGELHCIGATT 310 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHH----HHhchhhhcCceEEEEeCc
Confidence 7776 46889999999999998764 46899999999999865433221 1222 3333444578899999999
Q ss_pred CCC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCc----cccchHHHHHHHHHcC
Q 001395 555 RPD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATH 625 (1086)
Q Consensus 555 ~~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~----~~l~d~~l~~La~~t~ 625 (1086)
..+ .+|+++.| ||. .|.+ +.|+.+++..||+.+...+. ..+.+..+...+..++
T Consensus 311 ~~e~r~~~~~d~al~r--Rf~-~i~v--------------~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~ 373 (852)
T TIGR03346 311 LDEYRKYIEKDAALER--RFQ-PVFV--------------DEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSH 373 (852)
T ss_pred HHHHHHHhhcCHHHHh--cCC-EEEe--------------CCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcc
Confidence 764 47999999 996 4677 99999999999998866543 3467888888888887
Q ss_pred CCc-----HHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCC
Q 001395 626 GFV-----GADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSD 700 (1086)
Q Consensus 626 Gfs-----gaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1086)
+|. +.....|+++|+...-.+..... ..+......+. .+.. ..+.+.........
T Consensus 374 ~yi~~r~lPdkAidlld~a~a~~~~~~~~~~---~~~~~~~~~~~-------~~~~----------~~~~~~~~~~~~~~ 433 (852)
T TIGR03346 374 RYITDRFLPDKAIDLIDEAAARIRMEIDSKP---EELDELDRRII-------QLEI----------EREALKKEKDEASK 433 (852)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhhccCCc---hhHHHHHHHHH-------HHHH----------HHHHHHhcchhHHH
Confidence 775 44456678887654422111000 00000000000 0000 00000000000000
Q ss_pred Ccc-ccccCCcccccchHHHHhhccCCCC--------------------CC-CC-----------CCcc-----------
Q 001395 701 LPT-SLLSSSLPLRGTVSEIADNFHNGVS--------------------DS-SG-----------GMFM----------- 736 (1086)
Q Consensus 701 ~~~-~l~~~~~~~~~~~~~i~~~~~~~~~--------------------~~-~~-----------~~~~----------- 736 (1086)
... .+......+......+...+..... .. .. ....
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (852)
T TIGR03346 434 ERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEA 513 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHH
Confidence 000 0000000000000000000000000 00 00 0000
Q ss_pred ------ccccccccccHHHHHHHHHhhCchh-------hhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHh
Q 001395 737 ------SEKGCALKLELVDFEKARMKVRPSA-------MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKR 803 (1086)
Q Consensus 737 ------~~~~~~~~vt~~Df~~Al~~~~ps~-------~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~ 803 (1086)
.+......|+.+|+...+.....-. ..+........-...++|++.+++.+.+.+... +
T Consensus 514 ~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~ 585 (852)
T TIGR03346 514 KLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------R 585 (852)
T ss_pred HhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------h
Confidence 0000012255555555544432100 011111122223467899999999999888642 1
Q ss_pred hCC----CCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc------------cccccHHHHHHHHHHH
Q 001395 804 IGT----RPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVGESEKAVRSLFAKA 864 (1086)
Q Consensus 804 lg~----~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~------------~vGese~~ir~lf~~A 864 (1086)
.|+ +|...+||+||+|||||++|++||..+ +.+++.++++++... |+|..+. ..+....
T Consensus 586 ~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v 663 (852)
T TIGR03346 586 AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAV 663 (852)
T ss_pred ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHH
Confidence 222 233458999999999999999999876 578999999876332 2332221 2234444
Q ss_pred HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEEEecCCCCC----------
Q 001395 865 RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDK---------- 925 (1086)
Q Consensus 865 ~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI~aTN~p~~---------- 925 (1086)
+....+|||||||+. .+..+++.|++.|+... ...+.+||+|||....
T Consensus 664 ~~~p~~vlllDeiek-------------a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~ 730 (852)
T TIGR03346 664 RRKPYSVVLFDEVEK-------------AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDD 730 (852)
T ss_pred HcCCCcEEEEecccc-------------CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhccccc
Confidence 555667999999994 47889999999996432 1246789999997321
Q ss_pred ---------------CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc-------CCCC---CcccHHHHHHHcC--C
Q 001395 926 ---------------IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCS---SDVNIRELACLSE--G 978 (1086)
Q Consensus 926 ---------------lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~-------~~l~---~d~~l~~La~~t~--g 978 (1086)
+.|.|+. |+|.++.|.+++.++..+|+...+.. .++. .+..++.|++..- .
T Consensus 731 ~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~ 808 (852)
T TIGR03346 731 YEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPV 808 (852)
T ss_pred HHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCC
Confidence 3456665 99999999999999999998877642 1111 2223556666532 4
Q ss_pred CcHHHHHHHHHHHHHHHHHHh
Q 001395 979 CTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 979 ~sgadl~~l~~~A~~~A~~~~ 999 (1086)
+..+.|++++++.....+.+.
T Consensus 809 ~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 809 YGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred CCchhHHHHHHHHHHHHHHHH
Confidence 567899999988777665543
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=7.3e-30 Score=322.85 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=167.8
Q ss_pred hHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc----------ch-----------------
Q 001395 434 STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN----------YG----------------- 486 (1086)
Q Consensus 434 ~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~----------~G----------------- 486 (1086)
....++|+.+++||||+||||||||+|||++|.+.+++|+.|++++++.++ +|
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 344678999999999999999999999999999999999999999998654 12
Q ss_pred --------------hhH--HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc---cCCCe
Q 001395 487 --------------ESE--QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---RTDGV 547 (1086)
Q Consensus 487 --------------ese--~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~---~~~~v 547 (1086)
+.+ .+++.+|+.|++++||||||||||+++.+.. ....+.+|++.|++.. ...+|
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCCE
Confidence 222 3488999999999999999999999976511 1234789999999763 35689
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccc--hHHHHHHHHHcC
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLL--DSEVEYLSMATH 625 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~--d~~l~~La~~t~ 625 (1086)
+||||||+|+.+||||+||||||+.|.| +.|+..+|.+++..++...+..+. ..+++.+|+.|.
T Consensus 1774 IVIAATNRPD~LDPALLRPGRFDR~I~I--------------r~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~ 1839 (2281)
T CHL00206 1774 LVIASTHIPQKVDPALIAPNKLNTCIKI--------------RRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITM 1839 (2281)
T ss_pred EEEEeCCCcccCCHhHcCCCCCCeEEEe--------------CCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCC
Confidence 9999999999999999999999999999 889999999999876543333332 356899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhccccccc
Q 001395 626 GFVGADLAALCNEAALVCLRRYSKIQTSS 654 (1086)
Q Consensus 626 GfsgaDL~~L~~eA~~~a~rr~~~~~~~~ 654 (1086)
||+||||++||+||++.|+++........
T Consensus 1840 GfSGADLanLvNEAaliAirq~ks~Id~~ 1868 (2281)
T CHL00206 1840 GSNARDLVALTNEALSISITQKKSIIDTN 1868 (2281)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999865544433
No 73
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-27 Score=289.55 Aligned_cols=488 Identities=21% Similarity=0.267 Sum_probs=318.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
-.++.++|-++++.++.+++... ...+-+|.|+||+|||.++..+|..+ +..++.++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 34678999999999988887544 34567789999999999999999865 557889998
Q ss_pred ccccc--ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 478 PEVVS--QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 478 s~l~s--~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
..++. +|.|+.|.+++.+.+......+.||||||||.|.+.....++ .-. ..++|.....++.+.+|++|+.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~D----AaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMD----AANLLKPALARGELRCIGATTL 308 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccc----hhhhhHHHHhcCCeEEEEeccH
Confidence 88874 599999999999999998888999999999999977654332 112 2344445556788999999975
Q ss_pred CC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC----ccccchHHHHHHHHHcCC
Q 001395 556 PD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 556 ~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~----~~~l~d~~l~~La~~t~G 626 (1086)
-+ .-|+||-| ||. .|.+ ..|+.++...||+.+-..+ ++.+.|..+...+..++.
T Consensus 309 ~EYRk~iEKD~AL~R--RFQ-~V~V--------------~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 309 DEYRKYIEKDAALER--RFQ-KVLV--------------DEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred HHHHHHhhhchHHHh--cCc-eeeC--------------CCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 44 45899999 886 4555 8999999999999876554 345788888888777655
Q ss_pred C-----cHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCC
Q 001395 627 F-----VGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDL 701 (1086)
Q Consensus 627 f-----sgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1086)
| -+.--..|+++|+....-... .....+.+.. ...+.+. ....+. ...+
T Consensus 372 YI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~--~~~~l~~-e~~~~~---------------------~e~~- 425 (786)
T COG0542 372 YIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELER--ELAQLEI-EKEALE---------------------REQD- 425 (786)
T ss_pred hcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHH--HHHHHHH-HHHHHh---------------------hhhh-
Confidence 4 444455677777654422111 0000000000 0000000 000000 0000
Q ss_pred ccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchh-------hhhhhhhcCCccc
Q 001395 702 PTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA-------MREVILEVPKVKW 774 (1086)
Q Consensus 702 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~-------~re~~~e~p~v~~ 774 (1086)
...+..+..+...-..... ........ .|+.+++......+..-. .++......+.--
T Consensus 426 --------~~~k~~~~~~~~~~~~~~~------~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~ 490 (786)
T COG0542 426 --------EKEKKLIDEIIKLKEGRIP------ELEKELEA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLK 490 (786)
T ss_pred --------HHHHHHHHHHHHHhhhhhh------hHHHHHhh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHh
Confidence 0000000000000000000 00001111 266677766665544211 1222233333344
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCC----CCCcceeCCCCCcchHHHHHHHHHhC---CcEEEEeCCcccc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP----PTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFS 847 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~----~~gvLL~GPpGTGKTtLAkalA~~~~---~~fi~v~~sel~~ 847 (1086)
..++||+++...+-.+|.. .+.|+.. -..+||.||+|+|||.||++||..+. .+++.++++|+..
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 6689999999999998874 3345432 23488999999999999999999985 8999999999853
Q ss_pred c------------cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc-----
Q 001395 848 K------------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ----- 910 (1086)
Q Consensus 848 ~------------~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~----- 910 (1086)
+ |||..+.. .+-+..+....|||+||||+ +++..+++-||+.||...-
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIE-------------KAHpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIE-------------KAHPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhh-------------hcCHHHHHHHHHHhcCCeeecCCC
Confidence 3 77766543 36667777888999999999 6789999999999986532
Q ss_pred ----CCCEEEEEecCCCC----------------------------CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHH
Q 001395 911 ----RVNVTVIAATNRPD----------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 911 ----~~~v~VI~aTN~p~----------------------------~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l 958 (1086)
-.+.+||+|||--. .+.|+++. |+|.+|.|.+.+.+...+|++.++
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 23689999998320 02567776 999999999999999999998877
Q ss_pred hcC-------CCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHH
Q 001395 959 RKI-------PCS---SDVNIRELACLSE--GCTGADISLICREAAISAI 996 (1086)
Q Consensus 959 ~~~-------~l~---~d~~l~~La~~t~--g~sgadl~~l~~~A~~~A~ 996 (1086)
..+ .+. .+.-.++|+...- .|-+|-++.++++-....+
T Consensus 706 ~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~L 755 (786)
T COG0542 706 NRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPL 755 (786)
T ss_pred HHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHH
Confidence 542 222 2222455665443 4556777777765544443
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-29 Score=287.03 Aligned_cols=223 Identities=35% Similarity=0.573 Sum_probs=204.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhh-hHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~-~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
..|++|.|++..++.+.+++.++.++ ..|.. -..+.+++||.||||+|||+|+++||.+.++.|+.|+++++.++|+|
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g-lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~G 228 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG-LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVG 228 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhc-cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccC
Confidence 45789999999999999999998664 44432 34678899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--cCCCeeEEeccCCCCCCCcccc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~~~~viVIatTN~~d~idpaL~ 564 (1086)
++++.++.+|+-|+..+|+|+||||+|.++.+|.+...+..+++..+++-.+++.. ..++|+||+|||+|+.+|.+++
T Consensus 229 e~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~ 308 (428)
T KOG0740|consen 229 ESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAAR 308 (428)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHH
Confidence 99999999999999999999999999999999988788888999999998888864 3468999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
| ||.+.++| |.|+.+.|..+++.++.+.++.+.+.+++.+++.|+||++.||.++|++|++.-+
T Consensus 309 R--rf~kr~yi--------------plPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~ 372 (428)
T KOG0740|consen 309 R--RFVKRLYI--------------PLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPL 372 (428)
T ss_pred H--Hhhceeee--------------cCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCch
Confidence 9 99999999 9999999999999999998888899999999999999999999999999998776
Q ss_pred HHh
Q 001395 645 RRY 647 (1086)
Q Consensus 645 rr~ 647 (1086)
+..
T Consensus 373 r~~ 375 (428)
T KOG0740|consen 373 REL 375 (428)
T ss_pred hhc
Confidence 653
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.3e-28 Score=302.83 Aligned_cols=227 Identities=36% Similarity=0.609 Sum_probs=205.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|.++.|++..++++.+++.....+..+..++...+++++|+||||||||++|+++|++++.+|+.++++++...+.|.
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~ 228 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 228 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcc
Confidence 45689999999999999999887556777788888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC---CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~---~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
....++.+|+.+....||||||||+|.++..+.. ++.....+++++|+..||++....+++||++||+++.+|++++
T Consensus 229 ~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~ 308 (644)
T PRK10733 229 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 308 (644)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHh
Confidence 9999999999999999999999999999987754 2334556789999999999988889999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
||||||+.|.| +.|+.++|.+||+.++++.++. .+.++..+++.|.||+|+||.++|++|+..|.
T Consensus 309 RpgRfdr~i~v--------------~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~ 373 (644)
T PRK10733 309 RPGRFDRQVVV--------------GLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAA 373 (644)
T ss_pred CCcccceEEEc--------------CCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999887654 45678889999999999999999999999998
Q ss_pred HHhcc
Q 001395 645 RRYSK 649 (1086)
Q Consensus 645 rr~~~ 649 (1086)
++...
T Consensus 374 r~~~~ 378 (644)
T PRK10733 374 RGNKR 378 (644)
T ss_pred HcCCC
Confidence 76443
No 76
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=5.9e-21 Score=213.69 Aligned_cols=225 Identities=18% Similarity=0.206 Sum_probs=171.3
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCC---CcceeCCCCCcchHHHHHHHHHh-------CCcEEEEeCC
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT---GILMFGPPGCSKTLMARAVASEA-------GLNFLAVKGP 843 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~---gvLL~GPpGTGKTtLAkalA~~~-------~~~fi~v~~s 843 (1086)
+.+++|++++|+++++++.+ +..++..+..|..++. +++|+||||||||++|+++|..+ ..+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45899999999999999988 4456677777876543 38999999999999999999874 2369999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 844 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
++.+.|+|+++..++.+|+.|.. +||||||+|.+...++. ......+++.|+..|+.. ..+++||+|++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 99999999998888888888753 59999999998653321 234678899999999853 4578888888643
Q ss_pred C-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHH----Hc--CCCc-HHHHHHHHHH
Q 001395 924 D-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELAC----LS--EGCT-GADISLICRE 990 (1086)
Q Consensus 924 ~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~----~t--~g~s-gadl~~l~~~ 990 (1086)
. .++|++.+ ||+..|+|++|+.+++.+|++.++++....-. .....+.. .. ..|. ++++++++++
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 24799999 99999999999999999999999986553311 12222222 22 2344 8999999999
Q ss_pred HHHHHHHHhcCC--CCCCHHHH
Q 001395 991 AAISAIEENLDA--SRITMQHL 1010 (1086)
Q Consensus 991 A~~~A~~~~~~~--~~It~~d~ 1010 (1086)
|......+.... ..++.+|+
T Consensus 250 ~~~~~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 250 ARMRQANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHHHHHcCCCCCCCHHHH
Confidence 988777665432 34555544
No 77
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.3e-20 Score=208.79 Aligned_cols=218 Identities=23% Similarity=0.316 Sum_probs=171.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHc-------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDS-------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~---~~~vLL~GPpGTGKTtLAralA~~l-------g~~~i~I~~ 477 (1086)
+.+++++||+++|+.|++++.+.+....+...|+.+ ..+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 456899999999999999998886665555667653 4578999999999999999999864 237889999
Q ss_pred cccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 478 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 478 s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
+++.+.|+|+.+..++.+|+.+.. +||||||+|.|... +........+..|+..|+.. .+.+++|++++..+
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC---CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 999999999999999999988753 59999999999632 12234466788888888774 45566666654332
Q ss_pred -----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHc--------
Q 001395 558 -----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT-------- 624 (1086)
Q Consensus 558 -----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t-------- 624 (1086)
.++|++++ ||+..+.+ +.++.+++.+|++.++...+..+++..++.++...
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f--------------~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 218 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDF--------------PDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSS 218 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEE--------------CCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccC
Confidence 36789988 99888888 99999999999999998877777777777765431
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 625 -HGFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 625 -~GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
..-.++.+.+++..|..+...|...
T Consensus 219 ~~~gn~R~~~n~~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 219 REFSNARYVRNIIEKAIRRQAVRLLD 244 (261)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 1235788999999988777777543
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=1.2e-20 Score=211.19 Aligned_cols=216 Identities=23% Similarity=0.305 Sum_probs=172.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHc---C----CcEEEEccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDS---G----VNLFTVNGPEV 480 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~---~~~vLL~GPpGTGKTtLAralA~~l---g----~~~i~I~~s~l 480 (1086)
++|+|++++|++|++++........+.+.|+.+ +.++||+||||||||++|+++|+.+ | .+++.+++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 479999999999999998876667777788754 4468999999999999999999875 2 36899999999
Q ss_pred ccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC---
Q 001395 481 VSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD--- 557 (1086)
Q Consensus 481 ~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d--- 557 (1086)
.+.|+|+++..+..+|+.+.. +||||||+|.+...+. ..+....++..|+..|+.. .++++||++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 999999998888889988754 4999999999975332 2345678889999999863 46688888876422
Q ss_pred --CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHH------cCCCc-
Q 001395 558 --SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA------THGFV- 628 (1086)
Q Consensus 558 --~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~------t~Gfs- 628 (1086)
.++|+|++ ||+..|.| ++|+.+++.+|++.++.+.+..+++.....+... ...|.
T Consensus 176 ~~~~np~L~s--R~~~~i~F--------------~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GN 239 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDF--------------PDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFAN 239 (287)
T ss_pred HHhcCHHHHH--hCCceEEc--------------CCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCcc
Confidence 34689998 99999998 9999999999999999887766666655554443 23455
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 001395 629 GADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 629 gaDL~~L~~eA~~~a~rr~~~ 649 (1086)
+++++++++.|..+...|...
T Consensus 240 aR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 240 ARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 899999999998877777543
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=1.9e-20 Score=207.37 Aligned_cols=224 Identities=20% Similarity=0.240 Sum_probs=168.2
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCC---CCcceeCCCCCcchHHHHHHHHHh-------CCcEEEEeCC
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP---TGILMFGPPGCSKTLMARAVASEA-------GLNFLAVKGP 843 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~---~gvLL~GPpGTGKTtLAkalA~~~-------~~~fi~v~~s 843 (1086)
+++++|++++|+++++.+.|+... ......|..++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999999999987554 33334565433 358999999999999999999863 3488999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 844 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
++.++|+|+....++++|+.|. ++||||||+|.|... . ........++.|+..|+.. ..++++|++++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~---~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~ 153 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--G---EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSD 153 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--C---ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcc
Confidence 9999999999999999998875 359999999998531 1 1123467888999999854 3466677666433
Q ss_pred C-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHc-------C--CCcHHHHHHHH
Q 001395 924 D-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLS-------E--GCTGADISLIC 988 (1086)
Q Consensus 924 ~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t-------~--g~sgadl~~l~ 988 (1086)
+ .++|++.+ ||+..|.|+.++.+++.+|++.+++..+..- +..+..++... . .-+++.+++++
T Consensus 154 ~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 154 EMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred hhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 2 36889998 9999999999999999999999998765432 22234443221 1 23589999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHH
Q 001395 989 REAAISAIEENLDASRITMQHL 1010 (1086)
Q Consensus 989 ~~A~~~A~~~~~~~~~It~~d~ 1010 (1086)
..|......+.+....++.+++
T Consensus 232 e~a~~~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 232 EKAIRRQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHHHHHHhccCCCCHHHH
Confidence 9988877776655555555444
No 80
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.2e-20 Score=208.80 Aligned_cols=243 Identities=22% Similarity=0.325 Sum_probs=182.0
Q ss_pred CccccccccchhHH---HHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 771 KVKWEDVGGQREVK---TQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 771 ~v~~~di~G~e~vk---~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.+++|++||+++. .-|+++++. ....+++|||||||||||+|++||+..+.+|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 45788889998876 334455442 23456999999999999999999999999999999754
Q ss_pred ccccccHHHHHHHHHHHHhcC----CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec--C
Q 001395 848 KWVGESEKAVRSLFAKARANA----PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT--N 921 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~----p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT--N 921 (1086)
.+.+.+|++++.|+... ..|||+||||++. +.-|..||-.|+ .+.+++|+|| |
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-------------K~QQD~lLp~vE----~G~iilIGATTEN 142 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-------------KAQQDALLPHVE----NGTIILIGATTEN 142 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-------------hhhhhhhhhhhc----CCeEEEEeccCCC
Confidence 34678999999996533 4799999999873 344667888876 5578888887 4
Q ss_pred CCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHh--cCCCC------CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 922 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCS------SDVNIRELACLSEGCTGADISLICREAAI 993 (1086)
Q Consensus 922 ~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~--~~~l~------~d~~l~~La~~t~g~sgadl~~l~~~A~~ 993 (1086)
....+++||++ |. +++.+.+.+.++...+++..+. ..++. .+..++.|+..+.| |.+.+++-.-+
T Consensus 143 PsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~ 215 (436)
T COG2256 143 PSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLEL 215 (436)
T ss_pred CCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHH
Confidence 55779999999 76 5888999999999999988442 23332 34457778888888 66666653333
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhCCC---chhHHHHHHHHHHHHHhccccccccccccccccccchh
Q 001395 994 SAIEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN 1058 (1086)
Q Consensus 994 ~A~~~~~~~~~It~~d~~~al~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 1058 (1086)
.+.... ....++.+.+++.+.+.... ..+.+.++...|+|++++++.+++.||..++.......
T Consensus 216 ~~~~~~-~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp 282 (436)
T COG2256 216 AALSAE-PDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDP 282 (436)
T ss_pred HHHhcC-CCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCH
Confidence 222221 22245588888888775443 55678899999999999999999999999998876655
No 81
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=2.8e-20 Score=208.20 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=168.1
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCC---CCCcceeCCCCCcchHHHHHHHHHh-------CCcEEEEeCCc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP---PTGILMFGPPGCSKTLMARAVASEA-------GLNFLAVKGPE 844 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~---~~gvLL~GPpGTGKTtLAkalA~~~-------~~~fi~v~~se 844 (1086)
++++|++++|+++.+.+.+ ...++.+.+.|+.+ ..+++|+||||||||++|+++|..+ ..+|+.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999999998 66777778888764 3479999999999999999998875 23799999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC-
Q 001395 845 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP- 923 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p- 923 (1086)
+++.|+|+++..++.+|+.|.. +||||||+|.|.+.++. ......+++.|++.|+.. ..+++||+|++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999999998888889988754 59999999998643321 234678899999999853 4678899888643
Q ss_pred -CC---CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHc------CC-CcHHHHHHHHHHH
Q 001395 924 -DK---IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLS------EG-CTGADISLICREA 991 (1086)
Q Consensus 924 -~~---lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t------~g-~sgadl~~l~~~A 991 (1086)
+. ++|++.+ ||+..|+|++++.+++..|++.++++....- ...+..++... +. -++++++++++.+
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 32 4899999 9999999999999999999999998765432 22233444331 11 2479999999998
Q ss_pred HHHHHHHhc
Q 001395 992 AISAIEENL 1000 (1086)
Q Consensus 992 ~~~A~~~~~ 1000 (1086)
......+..
T Consensus 250 ~~~~~~r~~ 258 (284)
T TIGR02880 250 RLRQANRLF 258 (284)
T ss_pred HHHHHHHHh
Confidence 887766543
No 82
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=4.5e-20 Score=206.59 Aligned_cols=218 Identities=23% Similarity=0.275 Sum_probs=175.6
Q ss_pred ccc-ccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHcC-------CcEEEEcc
Q 001395 409 DIS-KLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDSG-------VNLFTVNG 477 (1086)
Q Consensus 409 ~l~-~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~---~~~vLL~GPpGTGKTtLAralA~~lg-------~~~i~I~~ 477 (1086)
.++ +++|++++|++|++++.+...++.+..+|+.+ +.+++|+||||||||++|+++|+.+. .+++.+++
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 344 79999999999999999876677778888764 55899999999999999999998762 26999999
Q ss_pred cccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC-
Q 001395 478 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP- 556 (1086)
Q Consensus 478 s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~- 556 (1086)
.++.+.+.|+++..++.+|+.+.. +||||||+|.+.+.+. .......++..|+..|+.. ..+++||++++..
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999998889999998754 5999999999864332 2345677888999999863 4678888887643
Q ss_pred -C---CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHH-------cC
Q 001395 557 -D---SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA-------TH 625 (1086)
Q Consensus 557 -d---~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~-------t~ 625 (1086)
+ .++|+|++ ||+..|.+ |.++.+++.+|++.++.+....+++..++.+..+ ..
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~f--------------p~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~ 235 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDF--------------PDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPH 235 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEe--------------CCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCC
Confidence 2 34799999 99999998 9999999999999999987766777777766655 22
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 626 GFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 626 GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
--+++++++++..+..+...|...
T Consensus 236 ~GN~R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 236 FANARSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhc
Confidence 235899999999998877777543
No 83
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.5e-20 Score=201.85 Aligned_cols=238 Identities=27% Similarity=0.380 Sum_probs=180.9
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhC-CCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEeC
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKG 842 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg-~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~~ 842 (1086)
-|+.++-...+|+++..++...+...+.-..-+ +...+-+||+||||||||+|.||+|+.+ ...++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 589999999999999988765554433211111 2334559999999999999999999875 356799999
Q ss_pred CccccccccccHHHHHHHHHHHHhc---CCe--EEEEecCchhhhhcCCCCCCC--CccHHHHHHHHHHHhccccCCCEE
Q 001395 843 PELFSKWVGESEKAVRSLFAKARAN---APS--IIFFDEIDGLAAIRGKESDGV--SVSDRVMSQLLVELDGLHQRVNVT 915 (1086)
Q Consensus 843 sel~~~~vGese~~ir~lf~~A~~~---~p~--ILflDEid~L~~~r~~~~~~~--~~~~~v~~~LL~~Ld~~~~~~~v~ 915 (1086)
..+++||.+++.+.+..+|++.... ..+ .++|||+++|+..|.....+. .-.-|++|.+|+.||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999987542 222 566999999998885433322 234589999999999999999999
Q ss_pred EEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC---CC---------------CcccHHHHHHH-c
Q 001395 916 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP---CS---------------SDVNIRELACL-S 976 (1086)
Q Consensus 916 VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~---l~---------------~d~~l~~La~~-t 976 (1086)
+++|+|-.+.||.|+.. |-|-+.|+++|+...+.+|++.++..+- +. .+.....++.. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999998 9999999999999999999998876431 10 01112333333 4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 977 EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 977 ~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
.|.+||-|+.+=- .|..+......|+..+|..++..
T Consensus 378 ~gLSGRtlrkLP~----Laha~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPL----LAHAEYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhH----HHHHhccCCCccChHHHHHHHHH
Confidence 7999998887643 33344444567898998877643
No 84
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.3e-20 Score=208.00 Aligned_cols=209 Identities=25% Similarity=0.384 Sum_probs=164.2
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
.+.| -+|+.++...+.|++|.+-+....+..+.+++.|....+|.|||||||||||+++.|||+.++..++.++.++..
T Consensus 194 f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 194 FPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred CCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 3444 689999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC---C--CccHHHHHHHHHHHhccccCC--CEEEEEe
Q 001395 847 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG---V--SVSDRVMSQLLVELDGLHQRV--NVTVIAA 919 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~---~--~~~~~v~~~LL~~Ld~~~~~~--~v~VI~a 919 (1086)
.... ++.++..+.. .+||+|.+||.=+..++..... . ....-.++.||+.+||+-... ..+||+|
T Consensus 273 -----~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 273 -----LDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred -----CcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 2233 7777776543 4699999999765433222111 1 123356889999999997655 7899999
Q ss_pred cCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCC--CcHHHHHH
Q 001395 920 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG--CTGADISL 986 (1086)
Q Consensus 920 TN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g--~sgadl~~ 986 (1086)
||..+.|||||+||||+|.+|+++.-+...-+.++..++.--. ...-.+++.+..++ .|+||+..
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 9999999999999999999999999999999999999986432 12223334333332 46777644
No 85
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-19 Score=200.08 Aligned_cols=209 Identities=24% Similarity=0.390 Sum_probs=158.3
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 850 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~v 850 (1086)
.-.+++++-.......|..+....- +. +..-.+-++||||||||||||++||-||..+|..+-.+.+.|+.- .-
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTa-NT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATA-NT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhc-cc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 3347778777777777776644211 11 112345677999999999999999999999999999999988632 22
Q ss_pred cccHHHHHHHHHHHHhcCCe-EEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChh
Q 001395 851 GESEKAVRSLFAKARANAPS-IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 929 (1086)
Q Consensus 851 Gese~~ir~lf~~A~~~~p~-ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~a 929 (1086)
.+....+.++|+.|+..... +|||||+|+++..|....-+ +.....+|.||-.-. ....+++++.|||+|..+|.|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymS-EaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMS-EAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhc-HHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHH
Confidence 24566789999999876654 88999999999988654322 344556666654432 345578999999999999999
Q ss_pred hhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC---------------------------CcccHHHHHHHcCCCcHH
Q 001395 930 LLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS---------------------------SDVNIRELACLSEGCTGA 982 (1086)
Q Consensus 930 LlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~---------------------------~d~~l~~La~~t~g~sga 982 (1086)
+-. |||.+|+|++|..++|..+|..++.++-.. .+.-+.+.|+.|+||+|+
T Consensus 502 V~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 502 VND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 998 999999999999999999999988764211 011256789999999999
Q ss_pred HHHHHHHH
Q 001395 983 DISLICRE 990 (1086)
Q Consensus 983 dl~~l~~~ 990 (1086)
+|..++-.
T Consensus 580 EiakLva~ 587 (630)
T KOG0742|consen 580 EIAKLVAS 587 (630)
T ss_pred HHHHHHHH
Confidence 99998853
No 86
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=4.4e-20 Score=181.39 Aligned_cols=130 Identities=46% Similarity=0.754 Sum_probs=116.8
Q ss_pred cceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcC-CeEEEEecCchhhhhcCCCCCC
Q 001395 812 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDG 890 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~-p~ILflDEid~L~~~r~~~~~~ 890 (1086)
+||+||||||||++|+++|+.++.+++.++++++.+.+.++..+.++.+|..++... |+||||||+|.+.... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 689999999999999999999999999999999998899999999999999999888 9999999999998877 2223
Q ss_pred CCccHHHHHHHHHHHhccccC-CCEEEEEecCCCCCCChhhhCCCCcceEeecCC
Q 001395 891 VSVSDRVMSQLLVELDGLHQR-VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 944 (1086)
Q Consensus 891 ~~~~~~v~~~LL~~Ld~~~~~-~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~ 944 (1086)
......++++|+..|+..... .+++||++||+++.++++++| +||++.|++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 456778899999999987654 569999999999999999998 89999999864
No 87
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=8.3e-20 Score=179.43 Aligned_cols=128 Identities=46% Similarity=0.787 Sum_probs=118.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCC-CeEEEEccchhhccCCCCCCch
Q 001395 447 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEE 525 (1086)
Q Consensus 447 vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~-P~ILfIDEiD~l~~~r~~~~~~ 525 (1086)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.++.++.+..+|+.+.... |+||||||+|.+.+........
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998899999999999999998887 9999999999999877555666
Q ss_pred hHHHHHHHHHHHhhccccC-CCeeEEeccCCCCCCCccccCCCCcceeeeh
Q 001395 526 LSQRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 526 ~~~rv~~~Ll~lLd~l~~~-~~viVIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
....++..|+..|+..... .+++||++||.++.++++++| +||++.|++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~ 130 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEF 130 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEc
Confidence 7889999999999998665 569999999999999999998 899999987
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=2.4e-18 Score=182.02 Aligned_cols=189 Identities=25% Similarity=0.345 Sum_probs=130.6
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
.+.+|+|++||++++..+.-++...... -....++|||||||+||||||+.||++++.+|..++++.+-.
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 4458999999999999987776532111 233456999999999999999999999999999999876421
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc----------------CCC
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ----------------RVN 913 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~----------------~~~ 913 (1086)
...+..++.... ...||||||||+| ...++..|+..|+...- ...
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRl-------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRL-------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhc-------------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 233444444443 3569999999976 56778889999975421 124
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCCCcHHHHHHHHHH
Q 001395 914 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICRE 990 (1086)
Q Consensus 914 v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g~sgadl~~l~~~ 990 (1086)
.++|+||++...+.+.|.. ||.-+..+..++.++..+|++.-.+.+.+.- +....++|..+.| +++-..+++++
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 7899999999999999998 9998889999999999999998888777763 3347788999988 66655555554
No 89
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=6.8e-18 Score=178.67 Aligned_cols=188 Identities=22% Similarity=0.308 Sum_probs=131.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
...|++++|+++.++.++-++.....+ -.+..++|||||||+||||||+.||++++.+|..++++.+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k---- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK---- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----
Confidence 456799999999999988777665211 134568999999999999999999999999999988865421
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc----------------CCCeeEE
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR----------------TDGVLVI 550 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~----------------~~~viVI 550 (1086)
...+..++.... ...||||||||.+ .+.....|+..|+...- -..+++|
T Consensus 89 --~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 89 --AGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp --CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred --HHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 123344444443 3469999999998 46677889999986431 1358999
Q ss_pred eccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHH
Q 001395 551 AATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 630 (1086)
Q Consensus 551 atTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gfsga 630 (1086)
+||++...+.+.|+. ||.-...+ ..++.++...|++.-....+..+++....++|.++.| +++
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l--------------~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPR 216 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRL--------------EFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPR 216 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE------------------THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHH
T ss_pred eeeccccccchhHHh--hcceecch--------------hcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChH
Confidence 999999999999998 99877677 7799999999999988888888999999999999988 555
Q ss_pred HHHHHHH
Q 001395 631 DLAALCN 637 (1086)
Q Consensus 631 DL~~L~~ 637 (1086)
-..+|++
T Consensus 217 iAnrll~ 223 (233)
T PF05496_consen 217 IANRLLR 223 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=6.3e-18 Score=212.00 Aligned_cols=244 Identities=18% Similarity=0.263 Sum_probs=178.1
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEEe
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVK 841 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v~ 841 (1086)
-.+++++|+++..+.+.+.+.. +...+++|+||||||||++|+++|... +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 4678999999988877666542 345679999999999999999999986 77899999
Q ss_pred CCccc--cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEe
Q 001395 842 GPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 919 (1086)
Q Consensus 842 ~sel~--~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~a 919 (1086)
...++ .+|.|+.++.++.+|+.+....++||||||+|.|.+.+...++ ...+.+.|...|. ++.+.+|+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~----~~~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG----SMDASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc----cHHHHHHHHHHHh----CCCeEEEEe
Confidence 88887 5799999999999999998778999999999999876432221 1234455555554 567999999
Q ss_pred cCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC----C-CCcccHHHHHHHcCCCcH-----HHH
Q 001395 920 TNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----C-SSDVNIRELACLSEGCTG-----ADI 984 (1086)
Q Consensus 920 TN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~----l-~~d~~l~~La~~t~g~sg-----adl 984 (1086)
||..+ .+|+|+.| ||+ .|+++.|+.+++.+|++.....+. + -.+..+..++..+..|-+ .-.
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 99643 47999999 996 799999999999999997765432 1 134457777777776643 222
Q ss_pred HHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC--------chhHHHHHHHHHHHHHhcc
Q 001395 985 SLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSN 1039 (1086)
Q Consensus 985 ~~l~~~A~~~A~~~~--~~~~~It~~d~~~al~~~~p~--------~~~~~~~~~~~~~~~~~~~ 1039 (1086)
-.++.+|+.....+. .....|+.+|+..++..+..- +...+..+.+.+++.++++
T Consensus 395 i~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ 459 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQ 459 (731)
T ss_pred HHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCc
Confidence 455666654332211 123459999999999886422 3445666666666666554
No 91
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.75 E-value=2.6e-18 Score=199.05 Aligned_cols=266 Identities=24% Similarity=0.346 Sum_probs=194.9
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeC---
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKG--- 842 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~--- 842 (1086)
...++|++|+|......++.+.+.. ....+..|||.|.+||||.++|++|-+. .+.|||.+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4567999999999999888877753 3456778999999999999999999765 4789999999
Q ss_pred ------CccccccccccHHHHH----HHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---
Q 001395 843 ------PELFSKWVGESEKAVR----SLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--- 909 (1086)
Q Consensus 843 ------sel~~~~vGese~~ir----~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--- 909 (1086)
++|++..-|.+..+.+ .+|+.|..+ .||||||..| +..+|.+||+.|+.-+
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-------------pl~LQaKLLRVLQEkei~r 371 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-------------PLPLQAKLLRVLQEKEIER 371 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-------------CHHHHHHHHHHHhhceEEe
Confidence 4456655555555443 577777665 9999999844 7889999999997432
Q ss_pred ------cCCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHH----hcCCCC-Ccc
Q 001395 910 ------QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHL----RKIPCS-SDV 967 (1086)
Q Consensus 910 ------~~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l----~~~~l~-~d~ 967 (1086)
...+|+||+|||+.-. .++..|||.+ ++.+..|...+|.+ +...++ ++++.. ..+
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~---~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLE---KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHH---HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 2357999999998744 5556677764 55667888888866 333344 334332 112
Q ss_pred cHHHHHHH-cCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHhh--CC-----CchhHHHHHHHHHHHHH
Q 001395 968 NIRELACL-SEGCT--GADISLICREAAISAIEENLDASRITMQHLK-TAIRHV--QP-----SEIHSYKELSAKFQRLV 1036 (1086)
Q Consensus 968 ~l~~La~~-t~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~-~al~~~--~p-----~~~~~~~~~~~~~~~~~ 1036 (1086)
.-+.++.. ...|. .|+|++++.+++..+-. ...|+..|+. ..+..- .+ .....+++..+.+|+.+
T Consensus 449 s~~a~~~L~~y~WPGNVRELeNviER~v~~~~~----~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~~ 524 (560)
T COG3829 449 SPDALALLLRYDWPGNVRELENVIERAVNLVES----DGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYEKHL 524 (560)
T ss_pred CHHHHHHHHhCCCCchHHHHHHHHHHHHhccCC----cceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHHHHH
Confidence 22333222 22355 49999999998864422 2347777777 444332 12 23456889999999999
Q ss_pred hccccccccccccccccccchh---HHHHHhhceE
Q 001395 1037 HSNAEADESGYQLRPSKSIGSN---MWTLIKSISL 1068 (1086)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~ 1068 (1086)
+..++....+++...++.+|+. ||++||++++
T Consensus 525 I~~aL~~~~gn~~~aAk~LgIsrttL~rKlkk~~l 559 (560)
T COG3829 525 IREALERHGGNKSKAAKELGISRTTLYRKLKKYGL 559 (560)
T ss_pred HHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 9999999999999999999998 9999999986
No 92
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.9e-17 Score=194.31 Aligned_cols=203 Identities=20% Similarity=0.310 Sum_probs=162.8
Q ss_pred CceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEE
Q 001395 371 ETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLH 450 (1086)
Q Consensus 371 ~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~ 450 (1086)
..++.+..++..|..+++|+.....+.+...++.... +|..||+++|++|.|+|...+++. --.++.+.|+
T Consensus 374 ~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLd---eDHYgm~dVKeRILEfiAV~kLrg------s~qGkIlCf~ 444 (906)
T KOG2004|consen 374 SSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILD---EDHYGMEDVKERILEFIAVGKLRG------SVQGKILCFV 444 (906)
T ss_pred ccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhc---ccccchHHHHHHHHHHHHHHhhcc------cCCCcEEEEe
Confidence 3566666677788899999998887777777766655 689999999999999998775432 3467888999
Q ss_pred cCCCChHHHHHHHHHHHcCCcEEEEcccccc---------cccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC
Q 001395 451 GPPGTGKTSLARLCAHDSGVNLFTVNGPEVV---------SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD 521 (1086)
Q Consensus 451 GPpGTGKTtLAralA~~lg~~~i~I~~s~l~---------s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~ 521 (1086)
||||+|||+++++||+.+|..|++++-.-+. ..|+|....++-+.++......| +++|||||.+.. +.
T Consensus 445 GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~ 521 (906)
T KOG2004|consen 445 GPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GH 521 (906)
T ss_pred CCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CC
Confidence 9999999999999999999999988754433 23899999999999998888777 899999999972 22
Q ss_pred CCchhHHHHHHHHHHHhhcccc-------------CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCC
Q 001395 522 GGEELSQRMVATLLNLMDGVCR-------------TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSP 588 (1086)
Q Consensus 522 ~~~~~~~rv~~~Ll~lLd~l~~-------------~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~ 588 (1086)
.++. .+.||++||.-+. -..|+||+|.|..+.|+++|+. |++ .|++
T Consensus 522 qGDP-----asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIel------------- 580 (906)
T KOG2004|consen 522 QGDP-----ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIEL------------- 580 (906)
T ss_pred CCCh-----HHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeec-------------
Confidence 2222 2567777776432 2479999999999999999988 875 6777
Q ss_pred CCCCCHHHHHHHHHHHHcc
Q 001395 589 AAVPSPAQRLEILHALLSG 607 (1086)
Q Consensus 589 ~~~Pd~~eR~~IL~~~l~~ 607 (1086)
+-+..++...|.+.|+-.
T Consensus 581 -sGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 581 -SGYVAEEKVKIAERYLIP 598 (906)
T ss_pred -cCccHHHHHHHHHHhhhh
Confidence 899999999999998753
No 93
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.74 E-value=7.9e-18 Score=195.84 Aligned_cols=271 Identities=21% Similarity=0.275 Sum_probs=197.5
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCC-----
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGP----- 843 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~s----- 843 (1086)
..+.+++|.+...+++++.+... ......|||+|++||||.++||+|... .+.|||.+||.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 46788999999999999988742 344567999999999999999999765 46799999994
Q ss_pred ----ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------c
Q 001395 844 ----ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 910 (1086)
Q Consensus 844 ----el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~ 910 (1086)
+|+++..|.+..+...-..+......++||||||..+ ...+|..||+.|+... -
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCCccc
Confidence 4566666666666555333333444559999999954 7889999999997432 1
Q ss_pred CCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhc----CCCC-CcccHHHHHH
Q 001395 911 RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRK----IPCS-SDVNIRELAC 974 (1086)
Q Consensus 911 ~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~----~~l~-~d~~l~~La~ 974 (1086)
+.+|.||+|||+.-. ++...|||.. ++.+..|...+|.+ ++++++++ .+.. ..+.-+.++.
T Consensus 274 ~vdvRiIaaT~~dL~---~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 274 KVDVRIIAATNRDLE---EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ceeeEEEeecCcCHH---HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 347999999998744 5555677753 67788899999876 55555543 3222 3444455544
Q ss_pred Hc-CCCcH--HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH--------hhCCCc---hhHHHHHHHHHHHHHhccc
Q 001395 975 LS-EGCTG--ADISLICREAAISAIEENLDASRITMQHLKTAIR--------HVQPSE---IHSYKELSAKFQRLVHSNA 1040 (1086)
Q Consensus 975 ~t-~g~sg--adl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~--------~~~p~~---~~~~~~~~~~~~~~~~~~~ 1040 (1086)
.. ..|.| ++|+|++++++..+ +...|+.+++...+. ...... ...+.+..+.+++.++..+
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~-----~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~~a 425 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILS-----EGPEIEVEDLPLEILAPAAEALAGPAGEAALPGLPLGEALAEVERQLILQA 425 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcC-----CccccchhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 33 35665 99999999998877 344566666553210 000000 1358889999999999999
Q ss_pred cccccccccccccccchh---HHHHHhhceEeeeccc
Q 001395 1041 EADESGYQLRPSKSIGSN---MWTLIKSISLFLCRFP 1074 (1086)
Q Consensus 1041 ~~~~~~~~~~~~~~~g~~---L~~~~k~~~~~l~~~~ 1074 (1086)
...+.|++.+.+..+|+. ||+|||++|+....+.
T Consensus 426 L~~~~g~~~~aA~~LGi~R~tLy~Klk~~g~~~~~~~ 462 (464)
T COG2204 426 LERTGGNKSEAAERLGISRKTLYRKLKEYGIDRSDVE 462 (464)
T ss_pred HHHhCCCHHHHHHHHCCCHHHHHHHHHHhCCCccccC
Confidence 999999999999999998 9999999999866443
No 94
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.4e-18 Score=183.82 Aligned_cols=176 Identities=28% Similarity=0.389 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhhhh-hhHh-hhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEcccccccccc
Q 001395 417 SKEYAILKDIIISSSV-KSTL-SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 417 ~~~~~~l~e~i~~~~~-~~~~-~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg---------~~~i~I~~s~l~s~~~ 485 (1086)
...|+++-.++....+ .+.- ..--+...+-+|||||||||||+|++++|+.+. ..+++||+..++++|.
T Consensus 148 s~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWF 227 (423)
T KOG0744|consen 148 SNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWF 227 (423)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHH
Confidence 3566677666544421 1111 111134567799999999999999999999873 3579999999999999
Q ss_pred hhhHHHHHHHHHHhhcC-----CCeEEEEccchhhccCCCC----CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 486 GESEQALHEVFDSASQS-----APAVVFIDELDAIAPARKD----GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~-----~P~ILfIDEiD~l~~~r~~----~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
+|+.+.+..+|+..... .-..++|||+++|+..|.. .......|+++.|+++||.+++..+|++++|+|-.
T Consensus 228 sESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~ 307 (423)
T KOG0744|consen 228 SESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT 307 (423)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH
Confidence 99999999999975432 2236788999999876632 12234679999999999999999999999999999
Q ss_pred CCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC
Q 001395 557 DSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM 608 (1086)
Q Consensus 557 d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~ 608 (1086)
+.||.|+.. |.|-..++ ++|+...+.+|++.++..+
T Consensus 308 ~siD~AfVD--RADi~~yV--------------G~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 308 DSIDVAFVD--RADIVFYV--------------GPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred HHHHHHhhh--Hhhheeec--------------CCccHHHHHHHHHHHHHHH
Confidence 999999988 99988888 9999999999999887653
No 95
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-15 Score=188.53 Aligned_cols=446 Identities=22% Similarity=0.267 Sum_probs=234.3
Q ss_pred cccCCc-HHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcccc
Q 001395 411 SKLGGL-SKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPE 479 (1086)
Q Consensus 411 ~~I~Gl-~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~s~ 479 (1086)
+.+.|- ++.+.++.+++... ..++-+|+|.||+|||.++.-+|+.. +..++.++...
T Consensus 186 dPvigr~deeirRvi~iL~Rr------------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSRK------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCccCCchHHHHHHHHHHhcc------------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 445454 77777777765333 34678899999999999999998765 33566666655
Q ss_pred cc--cccchhhHHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 480 VV--SQNYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 480 l~--s~~~Gese~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
++ .++.|+.+.+++.+...+. .+...||||||+|.+.......+ .....+.|.....++++.+|+||...
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-------~~d~~nlLkp~L~rg~l~~IGatT~e 326 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-------AIDAANLLKPLLARGGLWCIGATTLE 326 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-------HHHHHHhhHHHHhcCCeEEEecccHH
Confidence 54 3578999999999999887 45667999999999986554422 12223333333456679999988732
Q ss_pred C-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCc----cccchHHHH---HHH--H
Q 001395 557 D-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGME----HSLLDSEVE---YLS--M 622 (1086)
Q Consensus 557 d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~----~~l~d~~l~---~La--~ 622 (1086)
. .-+|++-| ||+- +.+ +.|+.++...||+..-..+. ....+..+. .+. .
T Consensus 327 ~Y~k~iekdPalEr--rw~l-~~v--------------~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~ 389 (898)
T KOG1051|consen 327 TYRKCIEKDPALER--RWQL-VLV--------------PIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARY 389 (898)
T ss_pred HHHHHHhhCcchhh--Ccce-eEe--------------ccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhh
Confidence 2 34788888 8864 334 88998888888887665521 122222211 111 1
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCcccccccccccccccc-ccccccccCCCCCCCC
Q 001395 623 ATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITE-SSRDCLDSASPCTSDL 701 (1086)
Q Consensus 623 ~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 701 (1086)
.+..|-+.-...++++|+...-....... ..++...............++..+- ...+. .....+.........
T Consensus 390 ~t~r~lpd~aidl~dEa~a~~~~~~~~lP---~wL~~~~~~~~~~~~e~~~L~kk~d-~~~h~r~~~~~~~~~~~~~~~- 464 (898)
T KOG1051|consen 390 ITLSFLPDCAIDLEDEAAALVKSQAESLP---PWLQNLERVDIKLQDEISELQKKWN-QALHKRPSLESLAPSKPTQQP- 464 (898)
T ss_pred cccCcCchhcccHHHHHHHHHhhhhhhCC---HHHHhhhhhhhhhHHHHHHHHHhhh-hhhcccccccccccccccccc-
Confidence 23444555555666666543322100000 0000000000000000000000000 00000 000000000000000
Q ss_pred ccccccCCcccccchHHHHhhccCCCCCCC--------CCCccccccccccc-------------cHHHHHHHHHhhC--
Q 001395 702 PTSLLSSSLPLRGTVSEIADNFHNGVSDSS--------GGMFMSEKGCALKL-------------ELVDFEKARMKVR-- 758 (1086)
Q Consensus 702 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~v-------------t~~Df~~Al~~~~-- 758 (1086)
+...+..-+..++++... .+...... .......+.....+ +..++........
T Consensus 465 ---l~~~~~~~~s~~~~l~~~-~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgi 540 (898)
T KOG1051|consen 465 ---LSASVDSERSVIEELKLK-KNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGI 540 (898)
T ss_pred ---chhhhccchhHHhhhccc-cCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCC
Confidence 000010001111111000 00000000 00000000000000 0111111000000
Q ss_pred chh-----hhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCC-CCCCCcceeCCCCCcchHHHHHHHHH
Q 001395 759 PSA-----MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGT-RPPTGILMFGPPGCSKTLMARAVASE 832 (1086)
Q Consensus 759 ps~-----~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~-~~~~gvLL~GPpGTGKTtLAkalA~~ 832 (1086)
|.. .++.+......--+.|+||+++...+-++|..... .++. .+...++|.||.|+|||-||+++|..
T Consensus 541 p~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~ 614 (898)
T KOG1051|consen 541 PVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEY 614 (898)
T ss_pred chhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHH
Confidence 000 00111111112224578999999999988875321 1111 24445999999999999999999987
Q ss_pred h---CCcEEEEeCCcc------c---cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 833 A---GLNFLAVKGPEL------F---SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 833 ~---~~~fi~v~~sel------~---~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
+ .-.||.++++++ . ..|+|..+.. .+.+..+....+||+||||| .++..+++.
T Consensus 615 ~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~LteavrrrP~sVVLfdeIE-------------kAh~~v~n~ 679 (898)
T KOG1051|consen 615 VFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVKRRPYSVVLFEEIE-------------KAHPDVLNI 679 (898)
T ss_pred HcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHhcCCceEEEEechh-------------hcCHHHHHH
Confidence 5 578999999863 2 2367765554 56677777778999999999 668899999
Q ss_pred HHHHHhcccc---------CCCEEEEEecCC
Q 001395 901 LLVELDGLHQ---------RVNVTVIAATNR 922 (1086)
Q Consensus 901 LL~~Ld~~~~---------~~~v~VI~aTN~ 922 (1086)
|++.||...- ..+++||+|+|.
T Consensus 680 llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 680 LLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 9999986532 247999999875
No 96
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.1e-17 Score=185.81 Aligned_cols=200 Identities=23% Similarity=0.303 Sum_probs=147.5
Q ss_pred ccccCCcHHHHHHHHHHH-HhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhh
Q 001395 410 ISKLGGLSKEYAILKDII-ISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i-~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ges 488 (1086)
|+.++=-.+.|+.|.+=+ ....-++.+.+.|..-.+|.|||||||||||+++.|+|+.++..++-++.+++... +
T Consensus 200 F~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n----~ 275 (457)
T KOG0743|consen 200 FETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD----S 275 (457)
T ss_pred ccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc----H
Confidence 344433345566665444 44445688899999999999999999999999999999999999988887665332 2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCc-------hhHHHHHHHHHHHhhccccCC--CeeEEeccCCCCCC
Q 001395 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE-------ELSQRMVATLLNLMDGVCRTD--GVLVIAATNRPDSI 559 (1086)
Q Consensus 489 e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~-------~~~~rv~~~Ll~lLd~l~~~~--~viVIatTN~~d~i 559 (1086)
+ ++.++-.+... +||+|++||+-+.-+..... ....-.+..||+.+|++-... ..+||+|||..+.+
T Consensus 276 d--Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkL 351 (457)
T KOG0743|consen 276 D--LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKL 351 (457)
T ss_pred H--HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhc
Confidence 2 78888776555 59999999987653322111 123456888999999996654 68999999999999
Q ss_pred CccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHc--CCCcHHHHHH
Q 001395 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT--HGFVGADLAA 634 (1086)
Q Consensus 560 dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t--~GfsgaDL~~ 634 (1086)
||||.||||+|.+|++ +.=+.++-..++..++.... +..-++.+.+.- .-.++||+..
T Consensus 352 DPALlRpGRmDmhI~m--------------gyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 352 DPALLRPGRMDMHIYM--------------GYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred CHhhcCCCcceeEEEc--------------CCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHH
Confidence 9999999999999999 77888888888888876532 122233333333 3358888775
No 97
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.73 E-value=8.9e-17 Score=176.25 Aligned_cols=250 Identities=20% Similarity=0.296 Sum_probs=175.2
Q ss_pred ccccccccchhHHHH---HHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc---EEEEeCCcc
Q 001395 772 VKWEDVGGQREVKTQ---LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKGPEL 845 (1086)
Q Consensus 772 v~~~di~G~e~vk~~---L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~---fi~v~~sel 845 (1086)
-+++|.+||+++..+ |+.+++. ..-..++|+||||||||+|||.|+.....+ ||++++..
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN- 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-
Confidence 356666777666432 3344432 223459999999999999999999887655 88887654
Q ss_pred ccccccccHHHHHHHHHHHHh-----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec
Q 001395 846 FSKWVGESEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~-----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT 920 (1086)
.....+|.+|+.++. ....||||||||++... .+..||-.++ .+.+++|+||
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-------------QQD~fLP~VE----~G~I~lIGAT 257 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-------------QQDTFLPHVE----NGDITLIGAT 257 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-------------hhhcccceec----cCceEEEecc
Confidence 346678999998865 44679999999987432 2344555544 5689999887
Q ss_pred --CCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc----------CCC----CCcccHHHHHHHcCCCcHHHH
Q 001395 921 --NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK----------IPC----SSDVNIRELACLSEGCTGADI 984 (1086)
Q Consensus 921 --N~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~----------~~l----~~d~~l~~La~~t~g~sgadl 984 (1086)
|....++.||++ |+ +++.+.....++...||.+...- ++- ..+.-++.++..++|-..+.+
T Consensus 258 TENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 258 TENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 444668999999 77 46777888888888888875431 111 123347889999999444444
Q ss_pred HHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhCC---CchhHHHHHHHHHHHHHhccccccccccccccccccchhHH
Q 001395 985 SLICREAAISAIEEN-LDASRITMQHLKTAIRHVQP---SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMW 1060 (1086)
Q Consensus 985 ~~l~~~A~~~A~~~~-~~~~~It~~d~~~al~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~ 1060 (1086)
..+--.+.+...++. .....++.+|+++.++.-.- ...+.+...+..|++.+++.+.++.+||..++-......||
T Consensus 335 N~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLY 414 (554)
T KOG2028|consen 335 NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLY 414 (554)
T ss_pred HHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHH
Confidence 333222223333333 24457999999999977432 24567778889999999999999999999999888777777
Q ss_pred H
Q 001395 1061 T 1061 (1086)
Q Consensus 1061 ~ 1061 (1086)
-
T Consensus 415 V 415 (554)
T KOG2028|consen 415 V 415 (554)
T ss_pred H
Confidence 3
No 98
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1e-16 Score=187.74 Aligned_cols=202 Identities=19% Similarity=0.223 Sum_probs=151.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|+|++|++++...|+.++.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 345899999999999999888763 2344568999999999999999999987652
Q ss_pred -----------EEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 837 -----------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 837 -----------fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
++.+++.. ......+|++.+.+. .+...|+||||+|.| +...++.|
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~NAL 141 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFNAL 141 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHHHH
Confidence 33443321 112344566655543 344569999999976 56789999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
|..|+. +..++++|++|+.++.|.+++++ |+ .++.|..++.++..+.++..+.+.++. .+..+..+++.++| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 999984 45689999999999999999999 88 468899999999989999888776654 44458888999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
.|+..+++..+... ....|+.+++.+.+
T Consensus 216 ~RdAL~lLeq~i~~------~~~~it~~~V~~~l 243 (484)
T PRK14956 216 VRDMLSFMEQAIVF------TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHHh------CCCCcCHHHHHHHh
Confidence 66666666655432 13358888887666
No 99
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.7e-16 Score=170.64 Aligned_cols=215 Identities=24% Similarity=0.305 Sum_probs=163.7
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
.+..|+|.+||+++|++|.-++...... -...-++|||||||.||||||+.||+++|.++-..+++-+-
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--- 89 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--- 89 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc---
Confidence 3457899999999999999888764333 33456799999999999999999999999999999998763
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc----------------cCCC
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVN 913 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~----------------~~~~ 913 (1086)
....+-.++..... .+||||||||++. ..+-.-|...|+... +...
T Consensus 90 ---K~gDlaaiLt~Le~--~DVLFIDEIHrl~-------------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 ---KPGDLAAILTNLEE--GDVLFIDEIHRLS-------------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---ChhhHHHHHhcCCc--CCeEEEehhhhcC-------------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 34445555554433 3599999999873 334444556666442 1235
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 914 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 914 v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
.++|+||.+.-+|-..|.. ||..+..+..++.++..+|+....+.+.+.-+ ....++|+.+.| +.|=...++++.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999988 99999999999999999999999888877633 347788999998 6666666677666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 993 ISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 993 ~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
-.|.-.. ...|+.+-..++++.+.
T Consensus 229 Dfa~V~~--~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 229 DFAQVKG--DGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHhc--CCcccHHHHHHHHHHhC
Confidence 6665443 45677777777776653
No 100
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.1e-17 Score=178.55 Aligned_cols=207 Identities=26% Similarity=0.399 Sum_probs=149.9
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhH
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE 489 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese 489 (1086)
|++++=.-....+|+++.... ... +..-.|-++||||||||||||++||-||...|..+-.+.|.|+.-- -.+.-
T Consensus 354 l~~ViL~psLe~Rie~lA~aT-aNT---K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaV 428 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIAT-ANT---KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAV 428 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHh-ccc---ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHH
Confidence 444444444555555544332 100 1123467889999999999999999999999999998888887432 23445
Q ss_pred HHHHHHHHHhhcCCC-eEEEEccchhhccCCCCCC-chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCC
Q 001395 490 QALHEVFDSASQSAP-AVVFIDELDAIAPARKDGG-EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPG 567 (1086)
Q Consensus 490 ~~l~~vf~~a~~~~P-~ILfIDEiD~l~~~r~~~~-~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~G 567 (1086)
..++++|+.++.... -+|||||+|+++-.|.... ++..+..++.||- ..-.....++++.+||+|..+|.++..
T Consensus 429 TkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf--RTGdqSrdivLvlAtNrpgdlDsAV~D-- 504 (630)
T KOG0742|consen 429 TKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF--RTGDQSRDIVLVLATNRPGDLDSAVND-- 504 (630)
T ss_pred HHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH--HhcccccceEEEeccCCccchhHHHHh--
Confidence 679999999876544 4889999999987765432 3333444444432 222345679999999999999999988
Q ss_pred CcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc----------------------c----cchHHHHHHH
Q 001395 568 RLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH----------------------S----LLDSEVEYLS 621 (1086)
Q Consensus 568 Rfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~----------------------~----l~d~~l~~La 621 (1086)
|+|..++| |.|..++|..+|..++.++-. . ..+..+.+.|
T Consensus 505 Ride~veF--------------pLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA 570 (630)
T KOG0742|consen 505 RIDEVVEF--------------PLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA 570 (630)
T ss_pred hhhheeec--------------CCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH
Confidence 99999999 999999999999998765421 0 1234467888
Q ss_pred HHcCCCcHHHHHHHHHHH
Q 001395 622 MATHGFVGADLAALCNEA 639 (1086)
Q Consensus 622 ~~t~GfsgaDL~~L~~eA 639 (1086)
+.|.||+|++|..|+...
T Consensus 571 kkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 571 KKTEGFSGREIAKLVASV 588 (630)
T ss_pred HhccCCcHHHHHHHHHHH
Confidence 999999999999987643
No 101
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=7.5e-16 Score=176.38 Aligned_cols=216 Identities=23% Similarity=0.288 Sum_probs=160.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 850 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~v 850 (1086)
+.+|++++|+++.++.+..++..... .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 44899999999999999888764211 124567899999999999999999999999998887776432
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc----------------cCCCE
Q 001395 851 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVNV 914 (1086)
Q Consensus 851 Gese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~----------------~~~~v 914 (1086)
....+..++... ..++||||||||.+.. ...+.|...|+... ...++
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-------------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSP-------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcch-------------HHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 122344444433 3467999999998732 22333444444321 11247
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 915 TVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAI 993 (1086)
Q Consensus 915 ~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~ 993 (1086)
.+|++||++..++++|.+ ||...+.|+.|+.+++.+|++......++. .+..+..+++.+.|. .+.+..+++.+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHH
Confidence 889999999999999988 999899999999999999999988776655 333478899999884 4788888888777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 001395 994 SAIEENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 994 ~A~~~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
.+..+. ...|+.+++..++..+...
T Consensus 229 ~a~~~~--~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 229 FAQVKG--DGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHcC--CCCCCHHHHHHHHHHhCCC
Confidence 776542 4579999999998776443
No 102
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=4.4e-16 Score=176.23 Aligned_cols=211 Identities=22% Similarity=0.279 Sum_probs=154.7
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccc
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGE 852 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGe 852 (1086)
+|++++|+++++++|..++..... ....+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 689999999999999988753211 1234567999999999999999999999998887776554321
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc----------------cCCCEEE
Q 001395 853 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVNVTV 916 (1086)
Q Consensus 853 se~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~----------------~~~~v~V 916 (1086)
...+...+... ..+.||||||+|.+.+ ..++.|+..|+... ....+.+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~-------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSP-------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCH-------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 12222333322 3457999999998732 23344555544221 1124789
Q ss_pred EEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 917 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 917 I~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
|++||++..+++++.+ ||...+.|++|+.+++.++++..+...... .+..++.+++.+.|+. +.+..+++.++..|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 9999999999999998 998889999999999999999888765544 3344788999998854 67788888777666
Q ss_pred HHHhcCCCCCCHHHHHHHHHhh
Q 001395 996 IEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 996 ~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
.... ...|+.+++..++..+
T Consensus 210 ~~~~--~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 210 QVRG--QKIINRDIALKALEML 229 (305)
T ss_pred HHcC--CCCcCHHHHHHHHHHh
Confidence 4443 3569999999998875
No 103
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=2.3e-16 Score=199.04 Aligned_cols=205 Identities=22% Similarity=0.267 Sum_probs=151.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccc---------
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV--------- 481 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~--------- 481 (1086)
++++|+++++++|.+++...... +-..+..++|+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 46999999999999987655221 122345799999999999999999999999999998765432
Q ss_pred cccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc-----c--------cCCCee
Q 001395 482 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-----C--------RTDGVL 548 (1086)
Q Consensus 482 s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l-----~--------~~~~vi 548 (1086)
..|.|.....+...|..+....| ||||||||.+.+.... + ..+.|+..||.. . ...+++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~--~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG--D-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC--C-----HHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 34777777778888888766665 8999999999753221 1 235677776641 1 125789
Q ss_pred EEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHc-----cC-----ccccchHHHH
Q 001395 549 VIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLS-----GM-----EHSLLDSEVE 618 (1086)
Q Consensus 549 VIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~-----~~-----~~~l~d~~l~ 618 (1086)
||+|||.++.++++|++ ||+ .|++ +.|+.+++.+|++.++. .. ...+++..+.
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~~-vi~~--------------~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~ 528 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RME-VIEL--------------SGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALL 528 (775)
T ss_pred EEEecCCchhCCHHHhC--Cee-EEec--------------CCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHH
Confidence 99999999999999998 995 6777 99999999999988762 11 2346777888
Q ss_pred HHHHH-cCCCcHHHHHHHHHHHHHHHHHH
Q 001395 619 YLSMA-THGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 619 ~La~~-t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
.+++. +..+..++|+..+......+.++
T Consensus 529 ~i~~~~~~e~g~R~l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 529 LLIKYYTREAGVRNLERQIEKICRKAAVK 557 (775)
T ss_pred HHHHhcChhcCChHHHHHHHHHHHHHHHH
Confidence 87764 44556677776666555544443
No 104
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=2.5e-16 Score=198.64 Aligned_cols=221 Identities=22% Similarity=0.270 Sum_probs=153.7
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc--------
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-------- 846 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~-------- 846 (1086)
+++.|++++++.+.+++...... +...+..++|+||||||||++|++||+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999999987653211 112234699999999999999999999999999999875432
Q ss_pred -cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-------------cCC
Q 001395 847 -SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------QRV 912 (1086)
Q Consensus 847 -~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-------------~~~ 912 (1086)
..|+|...+.+...|..+....| ||||||||.+.+.... ...+.|+..||... ...
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---------DPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---------CHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 35788888888888988876666 8999999998643211 12456777666310 124
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHH-----hcCCCC------CcccHHHHHH-HcCCCc
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCS------SDVNIRELAC-LSEGCT 980 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l-----~~~~l~------~d~~l~~La~-~t~g~s 980 (1086)
++++|+|||.++.|+++|++ ||+ +|.|+.|+.+++.+|++.++ +...+. .+..+..+++ .+..+.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 78999999999999999999 995 88999999999999998876 222222 2223455554 222333
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CC------CCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENL----DA------SRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~----~~------~~It~~d~~~al~ 1015 (1086)
.|+|+..+...+..+.++.+ .. ..|+.+++++.+.
T Consensus 540 ~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 540 VRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 45555544444433333221 11 3677777776654
No 105
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.4e-16 Score=182.64 Aligned_cols=206 Identities=16% Similarity=0.212 Sum_probs=149.3
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------- 835 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------- 835 (1086)
..+.+|++++|++++++.|+..+.. -+.+.++||+|||||||||+|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 3456899999999999988887763 234566999999999999999999998764
Q ss_pred -----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 836 -----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 836 -----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
.++.++++.- ..-..+|.+...+.. ....||||||+|.| ....++.
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-------------t~~a~~~ 136 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-------------TKEAFNA 136 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-------------HHHHHHH
Confidence 4555555321 123445666555542 23569999999977 3456788
Q ss_pred HHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCC
Q 001395 901 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGC 979 (1086)
Q Consensus 901 LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~ 979 (1086)
|+..|+.. ...+++|++|+.+..+++++.+ || .++.|.+++.++...+++..++..++. .+..+..|++.+.|
T Consensus 137 LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 137 LLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 88888853 4578888888888899999998 88 489999999999999999888765543 34457888888876
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
+.+++.+.++.++..+ ...|+.+++.+++...
T Consensus 211 dlR~aln~Le~l~~~~------~~~It~e~V~~~l~~~ 242 (472)
T PRK14962 211 GLRDALTMLEQVWKFS------EGKITLETVHEALGLI 242 (472)
T ss_pred CHHHHHHHHHHHHHhc------CCCCCHHHHHHHHcCC
Confidence 4444444444433221 2359999998887654
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=1.7e-16 Score=197.12 Aligned_cols=244 Identities=18% Similarity=0.233 Sum_probs=171.6
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEEe
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVK 841 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v~ 841 (1086)
-.++.++|.++..+++.+.+.. ....++||+||||||||++|+++|... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3567889999988888876653 245678999999999999999999763 55667766
Q ss_pred CCccc--cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEe
Q 001395 842 GPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 919 (1086)
Q Consensus 842 ~sel~--~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~a 919 (1086)
...++ .+|.|+.++.++.+|..+....++||||||||.|++.+...+. ...+.+.|... ..++.+.||+|
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g----~~d~~nlLkp~----L~~g~i~vIgA 321 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG----QVDAANLIKPL----LSSGKIRVIGS 321 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc----HHHHHHHHHHH----HhCCCeEEEec
Confidence 66655 4688999999999999998888899999999999876532211 12233323223 34668999999
Q ss_pred cCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccH-----HHHHHHcCCC-----cHHHH
Q 001395 920 TNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNI-----RELACLSEGC-----TGADI 984 (1086)
Q Consensus 920 TN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l-----~~La~~t~g~-----sgadl 984 (1086)
||.++ ..|++|.| ||+ .|.++.|+.+++..||+.+..++....++.+ ...+..+..| -....
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99875 47999999 996 7999999999999999998877666555543 3333434432 24467
Q ss_pred HHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC--------chhHHHHHHHHHHHHHhcc
Q 001395 985 SLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSN 1039 (1086)
Q Consensus 985 ~~l~~~A~~~A~~~~--~~~~~It~~d~~~al~~~~p~--------~~~~~~~~~~~~~~~~~~~ 1039 (1086)
..++.+|+....... .....|+.+|+.+.+.+...- +.+.+..+.+.+++.++++
T Consensus 399 idlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ 463 (758)
T PRK11034 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQ 463 (758)
T ss_pred HHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCc
Confidence 778888876442111 113458889999888775432 2334445555555544443
No 107
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-16 Score=187.09 Aligned_cols=283 Identities=22% Similarity=0.320 Sum_probs=197.5
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc--------
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-------- 846 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~-------- 846 (1086)
+|-.|++++|+++.|++.--... |....+-++|+||||+|||++||.||+.++..|++++...+-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 57789999999999998642111 222334489999999999999999999999999999975442
Q ss_pred -cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-------------cCC
Q 001395 847 -SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------QRV 912 (1086)
Q Consensus 847 -~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-------------~~~ 912 (1086)
..|+|.....+-+.+++....+| +++|||||.++ ++..++ --+.||..||.-. ...
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGD-------PasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGD-------PASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCC-------hHHHHHHhcChhhccchhhhccccccchh
Confidence 24999999999999999999999 99999999996 322222 1245666665321 234
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHh-----cCCCCC-ccc-----HHHHH-HHcC--C
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR-----KIPCSS-DVN-----IRELA-CLSE--G 978 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~-----~~~l~~-d~~-----l~~La-~~t~--g 978 (1086)
.|++|||.|..+.|+++|+. |+ ++|.++-+..+|...|.+.|+- +.++.. .++ +..|. +.|. |
T Consensus 554 kVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAG 630 (906)
T ss_pred heEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHh
Confidence 69999999999999999998 98 5999999999999999998873 233331 111 22222 2222 1
Q ss_pred Cc--HHHHHHHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHh-----hCCCchhHHHHHHHHHHHHHhcccccc
Q 001395 979 CT--GADISLICREAAISAIEENL--------DASRITMQHLKTAIRH-----VQPSEIHSYKELSAKFQRLVHSNAEAD 1043 (1086)
Q Consensus 979 ~s--gadl~~l~~~A~~~A~~~~~--------~~~~It~~d~~~al~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1086)
.- -+.|+.+|+.++..-.+... .....+..+.+++... ..+.....+..-...+++.+..+....
T Consensus 631 VRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~ 710 (906)
T KOG2004|consen 631 VRNLQKQIEKICRKVALKVVEGENSKEESAEKNGRESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTS 710 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccH
Confidence 10 25677778877776665542 1122333333333311 122234456666677888777777776
Q ss_pred ccccccccccccchhHHHHHhhceEeeecccCCc
Q 001395 1044 ESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGL 1077 (1086)
Q Consensus 1044 ~~~~~~~~~~~~g~~L~~~~k~~~~~l~~~~~~~ 1077 (1086)
...|...++.......|+-|.+..+|+++.-.+.
T Consensus 711 e~~y~~tp~GVvmGLaWT~mGG~~lyvEts~~~~ 744 (906)
T KOG2004|consen 711 ERMYEVTPPGVVMGLAWTAMGGSTLYVETSLMRG 744 (906)
T ss_pred HHHhccCCCeeEEEEEEecCCCeEEEEEEEEecc
Confidence 6677777777776677999999999999654443
No 108
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.5e-16 Score=185.32 Aligned_cols=236 Identities=20% Similarity=0.279 Sum_probs=172.8
Q ss_pred EEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCC
Q 001395 374 VYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPP 453 (1086)
Q Consensus 374 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPp 453 (1086)
-.+..++..|...++|........+...++.... .+..||+++|++|.|++...++... ..+.-++|+|||
T Consensus 289 ~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd---~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPP 359 (782)
T COG0466 289 ATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILD---KDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPP 359 (782)
T ss_pred HHHHHHHHHHHHhCCCccccchhhhHHHHHHHhc---ccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCC
Confidence 3345566778888899888777777777766665 6899999999999999877643321 234668899999
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcccccc------c---ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCc
Q 001395 454 GTGKTSLARLCAHDSGVNLFTVNGPEVV------S---QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE 524 (1086)
Q Consensus 454 GTGKTtLAralA~~lg~~~i~I~~s~l~------s---~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~ 524 (1086)
|+|||+|++.||+.+|..|++++..-+. + .|+|....++-+-...|....| |++|||||.+...-.+..
T Consensus 360 GVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP- 437 (782)
T COG0466 360 GVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP- 437 (782)
T ss_pred CCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh-
Confidence 9999999999999999999998754443 2 3899999888888888888887 999999999975432211
Q ss_pred hhHHHHHHHHHHHhhcccc-------------CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCC
Q 001395 525 ELSQRMVATLLNLMDGVCR-------------TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAV 591 (1086)
Q Consensus 525 ~~~~rv~~~Ll~lLd~l~~-------------~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~ 591 (1086)
.+.||..||.-+. -.+|+||+|.|..+.|+.+|+. |++ .|++ .-
T Consensus 438 ------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~l--------------sg 494 (782)
T COG0466 438 ------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRL--------------SG 494 (782)
T ss_pred ------HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeee--------------cC
Confidence 2567777776332 1479999999999999999988 875 6777 99
Q ss_pred CCHHHHHHHHHHHHccC-----c-----cccchHHHHHHHHH-c--CCCc--HHHHHHHHHHHHHHH
Q 001395 592 PSPAQRLEILHALLSGM-----E-----HSLLDSEVEYLSMA-T--HGFV--GADLAALCNEAALVC 643 (1086)
Q Consensus 592 Pd~~eR~~IL~~~l~~~-----~-----~~l~d~~l~~La~~-t--~Gfs--gaDL~~L~~eA~~~a 643 (1086)
+++++..+|.+.|+-.. + +.+.+..+..+.+. | .|.- -+.|..+|+.++..-
T Consensus 495 Yt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i 561 (782)
T COG0466 495 YTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKI 561 (782)
T ss_pred CChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999986322 2 23455555555443 1 2221 234555555555443
No 109
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=1.4e-15 Score=179.45 Aligned_cols=236 Identities=24% Similarity=0.351 Sum_probs=172.1
Q ss_pred CccccccccchhHHHH---HHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 771 KVKWEDVGGQREVKTQ---LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~---L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.+++|++|++++... |.+++.. ....+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 3578999999998666 7776642 223479999999999999999999999999999987642
Q ss_pred ccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecC--
Q 001395 848 KWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-- 921 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN-- 921 (1086)
....++.+++.+. .....||||||+|.+ ....++.|+..|+. ..+++|++|+
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-------------~~~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-------------NKAQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-------------CHHHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 2345666666653 235679999999976 34556778887763 4577777653
Q ss_pred CCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC--CC--CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 922 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--PC--SSDVNIRELACLSEGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 922 ~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~--~l--~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~ 997 (1086)
....+++++++ || .++.|++++.++...+++..+... ++ ..+..++.+++.+.| +.+.+.++++.++..
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~--- 203 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG--- 203 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc---
Confidence 34578999999 88 688999999999999999877542 11 123346778888865 556666666655432
Q ss_pred HhcCCCCCCHHHHHHHHHhhCC---CchhHHHHHHHHHHHHHhccccccccccccccccc
Q 001395 998 ENLDASRITMQHLKTAIRHVQP---SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKS 1054 (1086)
Q Consensus 998 ~~~~~~~It~~d~~~al~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1086)
...|+.+++.+++..... .....+.+....|.+.+.+.+.++..++..+....
T Consensus 204 ----~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~ 259 (413)
T PRK13342 204 ----VDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEA 259 (413)
T ss_pred ----cCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 356999999988876421 22345777788899999988888887777776644
No 110
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.2e-15 Score=184.49 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=144.2
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
...+|++|+|++++++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 345899999999999999988763 234566899999999999999999998754
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.+++++..+ ......+|++++.+.. ....|+||||+|.| +...+|.|
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~NAL 139 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFNAM 139 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHHHH
Confidence 244444332 1123456777776542 34579999999976 55678999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
|+.|+.. ..++.+|++||+++.|.+.+++ || ..+.|..++.++..+.|+..+++.++. .+..+..|++.++| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4589999999999999999998 88 688999999999999999888766554 34457888899988 5
Q ss_pred HHHHHHHHHHHHH
Q 001395 981 GADISLICREAAI 993 (1086)
Q Consensus 981 gadl~~l~~~A~~ 993 (1086)
.++..+++.++..
T Consensus 214 mRdALsLLdQAia 226 (830)
T PRK07003 214 MRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777666654
No 111
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.1e-15 Score=164.47 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=152.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
.+.|++.+|++++|+.++=+|...+.+. ...-++|||||||.||||||+.+|+++|.++-..+++-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l------ 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL------ 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc------
Confidence 3567899999999999998887773332 456789999999999999999999999999998888777
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc----------------CCCeeEE
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR----------------TDGVLVI 550 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~----------------~~~viVI 550 (1086)
+....+..++.....+ +||||||||.+. +.+-..|+..|+.+.- -..+++|
T Consensus 89 eK~gDlaaiLt~Le~~--DVLFIDEIHrl~-----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 89 EKPGDLAAILTNLEEG--DVLFIDEIHRLS-----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred cChhhHHHHHhcCCcC--CeEEEehhhhcC-----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2334556666665555 599999999994 3445677888877531 2468999
Q ss_pred eccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHH
Q 001395 551 AATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 630 (1086)
Q Consensus 551 atTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gfsga 630 (1086)
++|.+...+...|+. ||.....+ ..++.++..+|+......++..+++.....+|++..| +++
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rl--------------efY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPR 218 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRL--------------EFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPR 218 (332)
T ss_pred eeccccccccchhHH--hcCCeeee--------------ecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcH
Confidence 999999999999998 99887777 7799999999999999888888999999999999988 444
Q ss_pred HHHHHHHH
Q 001395 631 DLAALCNE 638 (1086)
Q Consensus 631 DL~~L~~e 638 (1086)
=..+|++.
T Consensus 219 IAnRLLrR 226 (332)
T COG2255 219 IANRLLRR 226 (332)
T ss_pred HHHHHHHH
Confidence 44444443
No 112
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-16 Score=181.96 Aligned_cols=274 Identities=21% Similarity=0.287 Sum_probs=190.8
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeC-----
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKG----- 842 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~----- 842 (1086)
.....+|+|.+.+..++.+.|+.. ......|||.|.+||||..+||+|-.. .+.||+.+||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 456778999999999999888753 345667999999999999999999766 4789999999
Q ss_pred ----CccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------
Q 001395 843 ----PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------- 909 (1086)
Q Consensus 843 ----sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------- 909 (1086)
+||+++..|.+..++..--.+......+.||+|||.. ....+|.+||+.|+..+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGe-------------lPL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGE-------------LPLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhcc-------------CCHHHHHHHHHHHhhcceeecCCCce
Confidence 4567777787777764443333334455999999984 47889999999997442
Q ss_pred cCCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHh----cCCCC-CcccHHHHH
Q 001395 910 QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLR----KIPCS-SDVNIRELA 973 (1086)
Q Consensus 910 ~~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~----~~~l~-~d~~l~~La 973 (1086)
-+.+|.||+|||+.-. ...+.|+|.. ++.+..|...+|.. +.+++++ +.+.. -...-+.+.
T Consensus 355 ikVDVRiIAATNRDL~---~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 355 IKVDVRVIAATNRDLE---EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred eEEEEEEEeccchhHH---HHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 1347999999998754 5566688864 44456788888754 3334443 34442 122222222
Q ss_pred HHcC-CCc--HHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHh----hCCC------ch--hHHHHHHHHHHHHH
Q 001395 974 CLSE-GCT--GADISLICREAAISAIEENLDASR--ITMQHLKTAIRH----VQPS------EI--HSYKELSAKFQRLV 1036 (1086)
Q Consensus 974 ~~t~-g~s--gadl~~l~~~A~~~A~~~~~~~~~--It~~d~~~al~~----~~p~------~~--~~~~~~~~~~~~~~ 1036 (1086)
.... +|. .+++++++++|+..| -....... ....++..-+.+ ..|+ .. ....+..+.+|+..
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla-~~~~~~~d~~~l~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~l~~~~~~~eR~~ 510 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA-GRLTRRGDLCTLELSLSALLWKTLPAPEPSALPEPALPGEHTLREATEEFERQL 510 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh-cccCCCcceeehhhhhhccccccCCCCCccccCCccCCCcccchhhhHHHHHHH
Confidence 2221 344 599999999999988 33222111 222222111111 1111 12 25678888999999
Q ss_pred hccccccccccccccccccchh---HHHHHhhceEeeec
Q 001395 1037 HSNAEADESGYQLRPSKSIGSN---MWTLIKSISLFLCR 1072 (1086)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~~l~~ 1072 (1086)
+..++....|+...+++.+|.. |-+.||++||.+.+
T Consensus 511 I~~aL~~~~~~~a~AAr~LGl~~~~L~~~~kRlGI~~~~ 549 (550)
T COG3604 511 IIAALEETNGNWAGAARRLGLTRRTLLYRMKRLGIKVKK 549 (550)
T ss_pred HHHHHHHhCCcHHHHHHHhCCCHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999988 99999999998653
No 113
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.1e-15 Score=182.76 Aligned_cols=187 Identities=21% Similarity=0.259 Sum_probs=143.9
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
...+|+||+|++++++.|++++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 445899999999999999998873 234566899999999999999999998765
Q ss_pred ---------------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHH
Q 001395 836 ---------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDR 896 (1086)
Q Consensus 836 ---------------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~ 896 (1086)
.+++++... ......+|++.+.+. .+...|+||||+|.| +..
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-------------s~~ 139 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------TNH 139 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-------------CHH
Confidence 334443321 112445677766654 344579999999976 567
Q ss_pred HHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHH
Q 001395 897 VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACL 975 (1086)
Q Consensus 897 v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~ 975 (1086)
.+|.||+.|+. ...++++|++||+++.|.+.+++ || +.+.|..++.++..+.++..+.+.++..+ ..++.+++.
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88999999984 45688999999999999999999 88 58889999999999999888876655433 346778888
Q ss_pred cCCCcHHHHHHHHHHHHH
Q 001395 976 SEGCTGADISLICREAAI 993 (1086)
Q Consensus 976 t~g~sgadl~~l~~~A~~ 993 (1086)
++| +.++..+++.++..
T Consensus 215 A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 215 AQG-SMRDALSLTDQAIA 231 (700)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 887 67777777766553
No 114
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=2.5e-15 Score=172.04 Aligned_cols=194 Identities=22% Similarity=0.267 Sum_probs=145.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++++|.++.++.+..++..... .-.++.+++||||||||||++|+++|++++..+..+++..+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------ 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------ 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------
Confidence 3568999999999999988865411 123567899999999999999999999999988877765432
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc----------------cCCCeeEEe
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 551 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~----------------~~~~viVIa 551 (1086)
....+..++... ..++||||||+|.+.. .....|+..|+... .-.++.+|+
T Consensus 89 ~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 89 KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 122344555443 3457999999998842 12223455554321 113478999
Q ss_pred ccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHH
Q 001395 552 ATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 631 (1086)
Q Consensus 552 tTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaD 631 (1086)
+||++..+++++++ ||...+.+ +.|+.+++.+|++......+..+++..++.++..+.|.. +.
T Consensus 156 at~~~~~l~~~L~s--Rf~~~~~l--------------~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~ 218 (328)
T PRK00080 156 ATTRAGLLTSPLRD--RFGIVQRL--------------EFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RI 218 (328)
T ss_pred ecCCcccCCHHHHH--hcCeeeec--------------CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hH
Confidence 99999999999988 99877888 899999999999999988888889999999999999854 66
Q ss_pred HHHHHHHHHHHHH
Q 001395 632 LAALCNEAALVCL 644 (1086)
Q Consensus 632 L~~L~~eA~~~a~ 644 (1086)
+..+++.+...+.
T Consensus 219 a~~~l~~~~~~a~ 231 (328)
T PRK00080 219 ANRLLRRVRDFAQ 231 (328)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665544443
No 115
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.66 E-value=2.5e-15 Score=170.12 Aligned_cols=192 Identities=21% Similarity=0.286 Sum_probs=141.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhh
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ges 488 (1086)
.|++++|++++++.|+.++..... .-..+.+++|+||||||||++|+++|++++..+..+.+..+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 467999999999999998865411 1134567999999999999999999999998877666543321
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc----------------cCCCeeEEec
Q 001395 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIAA 552 (1086)
Q Consensus 489 e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~----------------~~~~viVIat 552 (1086)
...+...+... ..+.||||||+|.+.+ .....|++.|+... ....+++|++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11223333332 3456999999998842 12334555554322 1134789999
Q ss_pred cCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHH
Q 001395 553 TNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 632 (1086)
Q Consensus 553 TN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL 632 (1086)
||++..+++++++ ||...+.+ +.|+.+++.+|++......+..+++..++.+++.+.|+. +.+
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l--------------~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~ 198 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRL--------------EFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIA 198 (305)
T ss_pred cCCccccCHHHHh--hcceEEEe--------------CCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chH
Confidence 9999999999988 99877788 889999999999999887777788899999999999855 666
Q ss_pred HHHHHHHHHHH
Q 001395 633 AALCNEAALVC 643 (1086)
Q Consensus 633 ~~L~~eA~~~a 643 (1086)
..+++.+...|
T Consensus 199 ~~ll~~~~~~a 209 (305)
T TIGR00635 199 NRLLRRVRDFA 209 (305)
T ss_pred HHHHHHHHHHH
Confidence 67777654443
No 116
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=7.1e-15 Score=176.38 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=152.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|++++|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 345899999999999999988863 244567899999999999999999998765
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.++.+++++- .....+|++...+. .+...|+||||+|.| +...++.|
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-------------S~~A~NAL 138 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-------------STHSFNAL 138 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-------------CHHHHHHH
Confidence 4455554421 12445677766553 234579999999976 45678899
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
++.|+.. ..++.+|++|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+++.++. .+..+..+++.+.| +
T Consensus 139 LKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4578888899999999889887 88 588999999999999999888776655 34457888888887 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.|++.+++..+... ....|+.+++...+.
T Consensus 213 LRdALnLLDQaIay------g~g~IT~edV~~lLG 241 (702)
T PRK14960 213 LRDALSLTDQAIAY------GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHHHHHHHHHh------cCCCcCHHHHHHHhc
Confidence 77777777665532 134567666655443
No 117
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.8e-15 Score=182.42 Aligned_cols=186 Identities=20% Similarity=0.244 Sum_probs=140.3
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|++|+|++.+++.|+.++.. -+.+..+||+||||||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 345899999999999999888763 1345567999999999999999999987653
Q ss_pred -----------EEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 837 -----------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 837 -----------fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
++.+++.+ ......+|++.+.+. .+...|+||||+|.| ....++.|
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqNAL 139 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFNAL 139 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHHHH
Confidence 12222211 012334566665543 234569999999976 57789999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
|+.|+. +..++++|++|+.+..|.+.+++ |+ .++.|++++.++....|+..+...++. .+..+..+++.+.| +
T Consensus 140 LKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999985 35578888899999999999998 87 688999999999999998888765443 33457788888887 6
Q ss_pred HHHHHHHHHHHH
Q 001395 981 GADISLICREAA 992 (1086)
Q Consensus 981 gadl~~l~~~A~ 992 (1086)
.|++.++|..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 677777777655
No 118
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.64 E-value=4.2e-15 Score=184.12 Aligned_cols=243 Identities=19% Similarity=0.253 Sum_probs=170.7
Q ss_pred CccccccccchhHHH---HHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 771 KVKWEDVGGQREVKT---QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~---~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.+++|++|++++.. .+++.+.. ....+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 457899999999875 45555442 223469999999999999999999999999998887531
Q ss_pred ccccccHHHHHHHHHHHH-----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC
Q 001395 848 KWVGESEKAVRSLFAKAR-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 922 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~-----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~ 922 (1086)
..+.++..+..+. .....||||||||.+ ....++.|+..++. ..+++|++|+.
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-------------n~~qQdaLL~~lE~----g~IiLI~aTTe 146 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-------------NKAQQDALLPWVEN----GTITLIGATTE 146 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-------------CHHHHHHHHHHhcC----ceEEEEEecCC
Confidence 1223444444432 134569999999976 34456677777653 46777777643
Q ss_pred C--CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc-------CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 923 P--DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCS-SDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 923 p--~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~-------~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
. ..+++++++ |+ .++.|++++.+++..+++..+.. ..+. .+..++.|++.+.| +.|++.++++.++
T Consensus 147 np~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 147 NPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred ChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3 468899998 65 47899999999999999988862 2222 33347788888865 6777777777766
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhC---CCchhHHHHHHHHHHHHHhccccccccccccccccc
Q 001395 993 ISAIEENLDASRITMQHLKTAIRHVQ---PSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKS 1054 (1086)
Q Consensus 993 ~~A~~~~~~~~~It~~d~~~al~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1086)
..+.........|+.+++++++.... ....+.+.+....|.+++++++.++..++..++...
T Consensus 223 ~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~ 287 (725)
T PRK13341 223 ESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEA 287 (725)
T ss_pred HhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 43322211123488888888886632 222335667788899999999999999998888754
No 119
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.6e-14 Score=175.85 Aligned_cols=186 Identities=20% Similarity=0.264 Sum_probs=142.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|++|+|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 345899999999999999888763 234556899999999999999999998765
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
+++.+++..- .....+|++.+.+. .+...|+||||+|.| +...+|.|
T Consensus 79 C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~NAL 139 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNAL 139 (647)
T ss_pred HHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHHHH
Confidence 2344443320 12344666665543 244569999999976 56789999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
|+.|+. +..++++|++|++++.|.+.+++ |+ ..+.|..++.++....|+..++..++. .+..+..++..+.| +
T Consensus 140 LKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999984 45688899999999999999998 87 689999999999999999888765554 33457788888887 6
Q ss_pred HHHHHHHHHHHH
Q 001395 981 GADISLICREAA 992 (1086)
Q Consensus 981 gadl~~l~~~A~ 992 (1086)
.++..+++..+.
T Consensus 214 ~R~Al~lldqai 225 (647)
T PRK07994 214 MRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHHH
Confidence 677777776554
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.62 E-value=8.4e-15 Score=185.37 Aligned_cols=200 Identities=24% Similarity=0.300 Sum_probs=147.8
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v 840 (1086)
+-.+++++|+++..+++.+.+.. +...+++|+||||||||++|+.+|... +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34788999999976666555432 344579999999999999999999875 3567888
Q ss_pred eCCccc--cccccccHHHHHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 841 KGPELF--SKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 841 ~~sel~--~~~vGese~~ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
+...+. .+|.|+.+..++.+|+.++. ..++||||||||.|.+.++..+.. .+-+.|...| .++.+.+|
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~-----d~~n~Lkp~l----~~G~l~~I 320 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-----DAANLLKPAL----ARGELRTI 320 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc-----cHHHHhhHHh----hCCCeEEE
Confidence 887765 36889999999999999864 468899999999998765432211 1223344444 36689999
Q ss_pred EecCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHcCCCcH-----H
Q 001395 918 AATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCTG-----A 982 (1086)
Q Consensus 918 ~aTN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-----~d~~l~~La~~t~g~sg-----a 982 (1086)
+||+..+ .+|+||.| ||. .|.++.|+.+++..||+.+.+.+... .+..+..++..+.+|-. .
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9998643 37999999 995 89999999999999987776554322 34557888888887763 3
Q ss_pred HHHHHHHHHHHHH
Q 001395 983 DISLICREAAISA 995 (1086)
Q Consensus 983 dl~~l~~~A~~~A 995 (1086)
-.-.++.+|+...
T Consensus 398 KAIdlldea~a~~ 410 (852)
T TIGR03345 398 KAVSLLDTACARV 410 (852)
T ss_pred HHHHHHHHHHHHH
Confidence 3345566665544
No 121
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.62 E-value=8.1e-15 Score=177.40 Aligned_cols=212 Identities=24% Similarity=0.343 Sum_probs=151.7
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEE
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 838 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi 838 (1086)
..+.+|++++|++..++.++..+.. ..+.++||+||||||||++|+++...+ +.+|+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 4557899999999999888765431 235679999999999999999997642 46899
Q ss_pred EEeCCcc-------ccccccccHHH----------------HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccH
Q 001395 839 AVKGPEL-------FSKWVGESEKA----------------VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD 895 (1086)
Q Consensus 839 ~v~~sel-------~~~~vGese~~----------------ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~ 895 (1086)
.+++... .....|..... ....+. .....+|||||||.| +.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L-------------~~ 189 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGEL-------------HP 189 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhC-------------CH
Confidence 9998631 11111110000 001122 233469999999965 56
Q ss_pred HHHHHHHHHHhccc--------------------------cCCCEEEEE-ecCCCCCCChhhhCCCCcceEeecCCCCHH
Q 001395 896 RVMSQLLVELDGLH--------------------------QRVNVTVIA-ATNRPDKIDPALLRPGRFDRLLYVGPPNET 948 (1086)
Q Consensus 896 ~v~~~LL~~Ld~~~--------------------------~~~~v~VI~-aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~ 948 (1086)
..++.|+..|+... ...++++|+ ||+.|+.+++++.+ ||. .++|++++.+
T Consensus 190 ~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~e 266 (531)
T TIGR02902 190 VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDE 266 (531)
T ss_pred HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHH
Confidence 78889998885421 012345555 55678999999998 885 6789999999
Q ss_pred HHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 949 DREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 949 eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
++.+|++..+++..+. .+..++.++..+ ++++++.++++.|+..|..+. ...|+.+|++.++..
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~--~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG--RKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC--CcEEcHHHHHHHhCC
Confidence 9999999999877654 333456666655 379999999999998886654 457999999999864
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=3.7e-15 Score=189.27 Aligned_cols=185 Identities=25% Similarity=0.358 Sum_probs=141.7
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v 840 (1086)
+-.|+.++|.++.++++.+.+.. +...+++|+||||||||++|+++|.+. +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34688999999999888887653 356689999999999999999999875 4789999
Q ss_pred eCCccc--cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEE
Q 001395 841 KGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 918 (1086)
Q Consensus 841 ~~sel~--~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~ 918 (1086)
+...++ .+|.|+.++.++.+|+.++...++||||||+|.|.+.++..+ .. .+.+-|...| .++.+.+|+
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g---~~--~~a~lLkp~l----~rg~l~~Ig 312 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG---AI--DAANILKPAL----ARGELQCIG 312 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC---cc--cHHHHhHHHH----hCCCcEEEE
Confidence 998876 578999999999999999888899999999999987653322 11 2333333333 356899999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc----CCCC-CcccHHHHHHHcCCCc
Q 001395 919 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK----IPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 919 aTN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~----~~l~-~d~~l~~La~~t~g~s 980 (1086)
+|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... ..+. .+..+..++..+.+|.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 999764 47999999 996 5789999999999988765432 2222 3344666777777665
No 123
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.2e-14 Score=166.34 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=149.2
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|++++|++++++.++..+.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 345899999999999999888763 2345668999999999999999999987532
Q ss_pred -----------EEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 837 -----------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 837 -----------fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
++.+++.. ......++.+...+.. ....|+||||+|.+ ....++.|
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-------------~~~a~naL 139 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-------------SRHSFNAL 139 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-------------CHHHHHHH
Confidence 22232211 1223456666665532 23469999999966 45677889
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
++.|+.. ..++.+|++|+.++.+.+++.+ |+ ..+.|++++.++..++++..+++.+.. .+..+..++..+.| +
T Consensus 140 Lk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4577888888888889999987 87 578999999999999999988776643 34457778888877 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+++.+++..++.. ....|+.+++.+++.
T Consensus 214 ~R~al~~l~~~~~~------~~~~It~~~v~~~l~ 242 (363)
T PRK14961 214 MRDALNLLEHAINL------GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHHh------cCCCCCHHHHHHHHC
Confidence 67777777665532 235678877777654
No 124
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.4e-14 Score=173.82 Aligned_cols=204 Identities=18% Similarity=0.204 Sum_probs=152.3
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|+|++|++++++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 345899999999999999998863 2345668999999999999999999987542
Q ss_pred -----------EEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 837 -----------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 837 -----------fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
++++++.. ......+|++.+.+.. +...|+||||+|.| +...++.|
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-------------s~~a~naL 139 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-------------SGHSFNAL 139 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-------------CHHHHHHH
Confidence 55555432 1234456777765542 34569999999976 45678999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
++.|+.. ..++.+|++|+++..+.+.+++ |+ ..+.|..++.++....++..+++.++. .+..+..+++.+.| +
T Consensus 140 Lk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9999854 4578888899999999888888 77 577899999999888888888776654 33457788888876 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
.+++.+++..++... ...|+.+++.+.+..
T Consensus 214 lR~al~lLdq~ia~~------~~~It~~~V~~~lg~ 243 (509)
T PRK14958 214 VRDALSLLDQSIAYG------NGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHHHHHHhcC------CCCcCHHHHHHHHCC
Confidence 778888887665331 345777766665544
No 125
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.5e-14 Score=171.71 Aligned_cols=222 Identities=24% Similarity=0.353 Sum_probs=159.1
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc------c--
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL------F-- 846 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel------~-- 846 (1086)
.|-.|++++|+++.|++.-.... +--...-++|+||||+|||+|++.||+.++..|++++...+ .
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56789999999999998642111 11112238899999999999999999999999999997544 2
Q ss_pred -cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-------------cCC
Q 001395 847 -SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------QRV 912 (1086)
Q Consensus 847 -~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-------------~~~ 912 (1086)
..|+|...+.+-+-+++|...+| +++|||||.+...-.++ --+.||..||.-. ...
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhhccccCccchh
Confidence 24999999999999999999999 99999999986432111 1245777776322 234
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHH-----hcCCCCC------cccHHHHHHH-cC--C
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCSS------DVNIRELACL-SE--G 978 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l-----~~~~l~~------d~~l~~La~~-t~--g 978 (1086)
+|++|+|+|..+.|+.+|+. |+ ++|.+.-++.+|..+|.+.|+ +..++.. +..+..+.+. |. |
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 79999999999999999998 98 599999999999999999887 3344431 2223333322 11 2
Q ss_pred Cc--HHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHh
Q 001395 979 CT--GADISLICREAAISAIEENLDAS-RITMQHLKTAIRH 1016 (1086)
Q Consensus 979 ~s--gadl~~l~~~A~~~A~~~~~~~~-~It~~d~~~al~~ 1016 (1086)
.- -++|..+||.++..-+....... .|+..++.+-+..
T Consensus 543 VR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 543 VRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 11 15677777777766555443332 5666677666643
No 126
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.3e-14 Score=169.88 Aligned_cols=203 Identities=19% Similarity=0.243 Sum_probs=155.8
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC---------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--------------- 834 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~--------------- 834 (1086)
.+.+|+|++|++.+++.|+.++.. -+.+.++||+||+||||||+|+++|+.++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 345899999999999999887763 24567899999999999999999998643
Q ss_pred ---------CcEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 835 ---------LNFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 835 ---------~~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.+++++++++- .....+|++.+.+.. ....|+||||+|.| +...++.|
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-------------s~~A~NaL 136 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-------------SNSAFNAL 136 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-------------CHHHHHHH
Confidence 34566665432 234567777777643 34569999999966 45678999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
++.|+.. ..++.+|++|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..+++.+.. .+..+..+++.+.| +
T Consensus 137 LK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999854 4578888899999999999998 77 578999999999999999888776654 34457788888876 7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+++.+.+..++... ...|+.+++.+.+.
T Consensus 211 lR~alslLdqli~y~------~~~It~e~V~~llg 239 (491)
T PRK14964 211 MRNALFLLEQAAIYS------NNKISEKSVRDLLG 239 (491)
T ss_pred HHHHHHHHHHHHHhc------CCCCCHHHHHHHHc
Confidence 778888887766543 23677777776543
No 127
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=6e-14 Score=175.89 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=169.3
Q ss_pred eEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcC
Q 001395 373 KVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGP 452 (1086)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GP 452 (1086)
+..+..++..|...++|+.......+...++.... .++.|++++|++|.+++...... +-..+..++|+||
T Consensus 287 e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~---~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~Gp 357 (784)
T PRK10787 287 EATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILD---TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGP 357 (784)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhh---hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECC
Confidence 33445566667777888877665556555655544 57999999999999988754221 1234567999999
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEccccccc---------ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC
Q 001395 453 PGTGKTSLARLCAHDSGVNLFTVNGPEVVS---------QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG 523 (1086)
Q Consensus 453 pGTGKTtLAralA~~lg~~~i~I~~s~l~s---------~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~ 523 (1086)
||+|||++++.+|+.++.+|+.++...... .|.|.....+...+..+....| ||||||+|.+.+....
T Consensus 358 pG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-- 434 (784)
T PRK10787 358 PGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-- 434 (784)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC--
Confidence 999999999999999999998887655321 3566666666666666554444 8999999999654221
Q ss_pred chhHHHHHHHHHHHhhccc-------------cCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCC
Q 001395 524 EELSQRMVATLLNLMDGVC-------------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAA 590 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l~-------------~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~ 590 (1086)
.....|+..||.-+ .-+++++|+|+|.. .|+++|++ ||+ .|.+ .
T Consensus 435 -----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~--------------~ 491 (784)
T PRK10787 435 -----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRL--------------S 491 (784)
T ss_pred -----CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeec--------------C
Confidence 12457777777421 22689999999987 59999998 985 6666 8
Q ss_pred CCCHHHHHHHHHHHHcc----------CccccchHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHH
Q 001395 591 VPSPAQRLEILHALLSG----------MEHSLLDSEVEYLSMA-THGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 591 ~Pd~~eR~~IL~~~l~~----------~~~~l~d~~l~~La~~-t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
.++.++..+|.+.++.. ..+.+++..++.+++. +..+-.+.+++.+...+...+.+
T Consensus 492 ~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~ 558 (784)
T PRK10787 492 GYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQ 558 (784)
T ss_pred CCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHH
Confidence 99999999999988841 1234567777777753 34555677777777666555554
No 128
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=4.4e-14 Score=168.72 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=155.7
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------ 836 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------ 836 (1086)
..+.+|+|++|++.+++.|+..+.. -+.+.++||+||+|||||++|+++|+.+++.
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 3445899999999999998887653 2456779999999999999999999987542
Q ss_pred ----------------EEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHH
Q 001395 837 ----------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDR 896 (1086)
Q Consensus 837 ----------------fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~ 896 (1086)
++++++.. ......++++++.+.. +...|+||||+|.+ +..
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-------------s~~ 143 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-------------SKG 143 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-------------CHH
Confidence 22222211 1235567888877753 23569999999966 456
Q ss_pred HHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHH
Q 001395 897 VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACL 975 (1086)
Q Consensus 897 v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~ 975 (1086)
.++.|++.|+. +...+++|++|+.++.+.+++.+ |+ ..+.|..++.++...+++..+++.+... +..+..++..
T Consensus 144 a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 78889999984 35578888889999999999998 87 5788999999999999999998766543 3447888888
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 976 SEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 976 t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
+.| +.+++.++++.++..+-. +...||.+++...+..
T Consensus 219 s~G-slR~al~~Ldkai~~~~~---~~~~It~~~V~~llg~ 255 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMSAK---SDNIISPQVINQMLGL 255 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhhcc---CCCCcCHHHHHHHHCC
Confidence 887 778888888877655421 1235777777666544
No 129
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.3e-14 Score=163.08 Aligned_cols=168 Identities=24% Similarity=0.403 Sum_probs=126.0
Q ss_pred ccccccCCcHHHHH---HHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 408 QDISKLGGLSKEYA---ILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~---~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
.++++++|++..+. .|+.+|+.. .-.+++|||||||||||||+.||+..+.+|..+++..
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~------------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~----- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAG------------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT----- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcC------------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-----
Confidence 45688999988763 455555443 3346999999999999999999999999999998633
Q ss_pred chhhHHHHHHHHHHhhcC----CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEecc--CCCCC
Q 001395 485 YGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT--NRPDS 558 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatT--N~~d~ 558 (1086)
..-+.++.+++.|+.. ...||||||||.+- +.-+..||..|+ .+.+++|++| |+.-.
T Consensus 84 --~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQD~lLp~vE----~G~iilIGATTENPsF~ 146 (436)
T COG2256 84 --SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQDALLPHVE----NGTIILIGATTENPSFE 146 (436)
T ss_pred --ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhhhhhhhhhc----CCeEEEEeccCCCCCee
Confidence 2346788899888443 35799999999984 233456777664 5778999887 45568
Q ss_pred CCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC--ccc-----cchHHHHHHHHHcCC
Q 001395 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM--EHS-----LLDSEVEYLSMATHG 626 (1086)
Q Consensus 559 idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~--~~~-----l~d~~l~~La~~t~G 626 (1086)
+.++|++ |. +++++ .+.+.++...+++..+... ++. +++..++.++..+.|
T Consensus 147 ln~ALlS--R~-~vf~l--------------k~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 147 LNPALLS--RA-RVFEL--------------KPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred ecHHHhh--hh-heeee--------------ecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 8999998 65 35566 8899999999998843322 222 567788899988887
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=8.3e-14 Score=166.95 Aligned_cols=204 Identities=23% Similarity=0.300 Sum_probs=148.5
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------- 835 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------- 835 (1086)
..+.+|+|++|++++++.|+.++.. -+.+..+||+|||||||||+|+++|+.+.+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 3456899999999999999988873 234455799999999999999999988743
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.++.+++.+ ......+|++...+.. ..+.||||||+|.+ ....++.|
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~naL 136 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFNAL 136 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHHHH
Confidence 244455432 1123445666554432 35679999999955 45678899
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
+..|+.. ..++++|++||.+..+.+++.+ |+. ++.|.+|+.++....++..+++.++. .+..+..++..+.| +
T Consensus 137 Lk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-d 210 (504)
T PRK14963 137 LKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-A 210 (504)
T ss_pred HHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 3477888889999999999998 774 78999999999999999988876655 34457788888887 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
.+++.+.++.+... ...||.+++...+..
T Consensus 211 lR~aln~Lekl~~~-------~~~It~~~V~~~l~~ 239 (504)
T PRK14963 211 MRDAESLLERLLAL-------GTPVTRKQVEEALGL 239 (504)
T ss_pred HHHHHHHHHHHHhc-------CCCCCHHHHHHHHCC
Confidence 55555555554321 235777776665543
No 131
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.2e-14 Score=172.34 Aligned_cols=204 Identities=19% Similarity=0.246 Sum_probs=151.8
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|+||+|++.+++.|+.++.. -+.+.++||+||+|||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 445899999999999999998873 2456779999999999999999999986542
Q ss_pred -----------EEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 837 -----------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 837 -----------fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
++.+++.. +.....+|+++..+.. ....||||||+|.| ....++.|
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~NAL 139 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAFNAM 139 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHHHHH
Confidence 22333221 1234567777776532 34579999999965 45678899
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
|+.|+.. ..++.+|++|+++..+.+.+++ || ..+.|+.++.++....++..+++.++. .+..+..|++.+.| +
T Consensus 140 LKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 9999853 4578889999999999999886 87 467888999999999999988877655 33447888888876 7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
.+++.+++..+.... ...|+.+++...+..
T Consensus 214 lRdAlnLLDqaia~g------~g~It~e~V~~lLG~ 243 (709)
T PRK08691 214 MRDALSLLDQAIALG------SGKVAENDVRQMIGA 243 (709)
T ss_pred HHHHHHHHHHHHHhc------CCCcCHHHHHHHHcc
Confidence 778888887766532 235666666555443
No 132
>PRK04195 replication factor C large subunit; Provisional
Probab=99.59 E-value=6.8e-14 Score=168.21 Aligned_cols=206 Identities=21% Similarity=0.288 Sum_probs=149.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
.+.++++++|++++++.|++++.... .-.+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~---------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWL---------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 44578999999999999999986321 1234678999999999999999999999999999999987532
Q ss_pred ccccHHHHHHHHHHHHh------cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 850 VGESEKAVRSLFAKARA------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~------~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
...++.+...+.. ..+.||+|||+|.+... .....++.|+..++. .+..+|++||.+
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~---------~d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN---------EDRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc---------cchhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 2233444333322 25679999999987431 123456677777763 345678888999
Q ss_pred CCCCh-hhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC
Q 001395 924 DKIDP-ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001 (1086)
Q Consensus 924 ~~lD~-aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~ 1001 (1086)
..+.+ .+.+ |+ ..|.|+.|+.+++..+++..+...++. .+..+..|+..+.| |++.+++.....+. .
T Consensus 141 ~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a~----~ 209 (482)
T PRK04195 141 YDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIAE----G 209 (482)
T ss_pred cccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHhc----C
Confidence 88877 5554 44 689999999999999999988766654 34457888888877 88888876655331 2
Q ss_pred CCCCCHHHHHHHH
Q 001395 1002 ASRITMQHLKTAI 1014 (1086)
Q Consensus 1002 ~~~It~~d~~~al 1014 (1086)
...|+.+++....
T Consensus 210 ~~~it~~~v~~~~ 222 (482)
T PRK04195 210 YGKLTLEDVKTLG 222 (482)
T ss_pred CCCCcHHHHHHhh
Confidence 3456777665444
No 133
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.1e-14 Score=167.11 Aligned_cols=185 Identities=16% Similarity=0.218 Sum_probs=138.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++++|++.++..|+.++... ..+..+||+|||||||||+|+.+|+.+++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 46789999999999999888654 124458999999999999999999998752
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.+++..- .| -..++++.+.+ ..+...|+||||+|.+. ....+.|+..|+
T Consensus 84 i~~g~~~dviEIdaas~----~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLKtLE 146 (484)
T PRK14956 84 ITKGISSDVLEIDAASN----RG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLKTLE 146 (484)
T ss_pred HHccCCccceeechhhc----cc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHHHhh
Confidence 344443211 01 12344443332 23455799999999983 456788888887
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
. ....+++|++|+.++.|.+++++ |+. .+.+ ..++.++..+.++..+...+..+++..+..
T Consensus 147 E--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f--------------~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~ 207 (484)
T PRK14956 147 E--PPAHIVFILATTEFHKIPETILS--RCQ-DFIF--------------KKVPLSVLQDYSEKLCKIENVQYDQEGLFW 207 (484)
T ss_pred c--CCCceEEEeecCChhhccHHHHh--hhh-eeee--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 6 35689999999999999999998 764 4555 788888888999998888888888999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
+++..+| ..++..+++..+.
T Consensus 208 Ia~~S~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 208 IAKKGDG-SVRDMLSFMEQAI 227 (484)
T ss_pred HHHHcCC-hHHHHHHHHHHHH
Confidence 9999888 5666666665543
No 134
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.8e-14 Score=171.65 Aligned_cols=185 Identities=19% Similarity=0.281 Sum_probs=140.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|++.+++.|+.++... +.+..+||+||+||||||+|+++|+.+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 46789999999999999987654 23455899999999999999999998865
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.+++++..+- . .-..++.+++.+. .....||||||+|.|. ....+.|++.|+
T Consensus 82 I~~G~h~DviEIDAas~--r----gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLKtLE 144 (830)
T PRK07003 82 IDEGRFVDYVEMDAASN--R----GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLKTLE 144 (830)
T ss_pred HhcCCCceEEEeccccc--c----cHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHHHHH
Confidence 2344443321 1 1123455555432 2345699999999983 345678888887
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. ..++.||++||.++.|.+.+++ |+ ..+.| ..++.++..++|+..+...+..+++..+..
T Consensus 145 EP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~F--------------k~Ls~eeIv~~L~~Il~~EgI~id~eAL~l 205 (830)
T PRK07003 145 EP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNL--------------KQMPAGHIVSHLERILGEERIAFEPQALRL 205 (830)
T ss_pred hc--CCCeEEEEEECChhhccchhhh--he-EEEec--------------CCcCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 63 4578999999999999999998 77 35555 889999999999999988888888999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
|++...| +.++..+++..+.
T Consensus 206 IA~~A~G-smRdALsLLdQAi 225 (830)
T PRK07003 206 LARAAQG-SMRDALSLTDQAI 225 (830)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9999988 4566666666554
No 135
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=7.8e-14 Score=169.61 Aligned_cols=202 Identities=23% Similarity=0.269 Sum_probs=150.9
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------- 835 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------- 835 (1086)
..+.+|++++|++++++.|+..+.. .+.++.+||+||+|||||++|+++|+.+.+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 3456899999999999999998863 234566999999999999999999988642
Q ss_pred -----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 836 -----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 836 -----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
+++.+++.. +.....+|++...+.. ....|+||||+|.| +...++.
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-------------t~~a~na 138 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-------------STGAFNA 138 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHH
Confidence 445554432 2345567777777653 33569999999966 4567889
Q ss_pred HHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCCC
Q 001395 901 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGC 979 (1086)
Q Consensus 901 LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g~ 979 (1086)
|++.|+.. ..++++|++|+.++.+.+.+++ |+. .+.|++|+.++....++..+++.++.. +..+..++..+.|
T Consensus 139 LLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99999853 4578888888899999999998 874 678999999999999999888776543 3457778888877
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTA 1013 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~a 1013 (1086)
+.+++.+++..+.... ...|+.+++...
T Consensus 213 ~~R~al~~Ldq~~~~~------~~~It~~~V~~v 240 (559)
T PRK05563 213 GMRDALSILDQAISFG------DGKVTYEDALEV 240 (559)
T ss_pred CHHHHHHHHHHHHHhc------cCCCCHHHHHHH
Confidence 6777777777665432 234665554443
No 136
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.2e-14 Score=171.80 Aligned_cols=185 Identities=20% Similarity=0.302 Sum_probs=138.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|++.+++.|++++.... .+..+||+||+||||||+|+.+|+.+++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-----------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-----------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 467899999999999999987652 2455899999999999999999998865
Q ss_pred ------------cEEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHH
Q 001395 471 ------------NLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL 534 (1086)
Q Consensus 471 ------------~~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~L 534 (1086)
.+++++..+- ..+ ..++++.+.+ ..+...|+||||+|.|. ....+.|
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~--~gV----DdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~AaNAL 144 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASN--RGV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAFNAM 144 (700)
T ss_pred HHHHHHHcCCCCcceEeccccc--CCH----HHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHHHHH
Confidence 2344443311 112 2344444433 23445799999999983 4556788
Q ss_pred HHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccch
Q 001395 535 LNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLD 614 (1086)
Q Consensus 535 l~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d 614 (1086)
|+.|+. ..++++||++||.++.|.+.+++ |+ ..+.| ..++.++..+.|+..+...+...++
T Consensus 145 LKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f--------------~~ls~eei~~~L~~Il~~Egi~~d~ 205 (700)
T PRK12323 145 LKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNL--------------KQMPPGHIVSHLDAILGEEGIAHEV 205 (700)
T ss_pred HHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-Hhccc--------------CCCChHHHHHHHHHHHHHcCCCCCH
Confidence 888886 34678999999999999999988 76 34455 8899999999999888777777778
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 615 ~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
..++.|++..+| +.++..+++.++.
T Consensus 206 eAL~~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 206 NALRLLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 888889988877 6677777766554
No 137
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.4e-14 Score=169.69 Aligned_cols=201 Identities=18% Similarity=0.247 Sum_probs=148.7
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC---------------
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--------------- 835 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~--------------- 835 (1086)
+.+|++++|++.+++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 45899999999999999998863 234566899999999999999999988754
Q ss_pred --------------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHH
Q 001395 836 --------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 897 (1086)
Q Consensus 836 --------------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v 897 (1086)
.++.+++.. ......+|++.+.+.. +...|+||||+|.| +...
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-------------s~~a 140 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-------------TNTA 140 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-------------CHHH
Confidence 233333321 1123457777776543 22469999999976 4567
Q ss_pred HHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHc
Q 001395 898 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLS 976 (1086)
Q Consensus 898 ~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t 976 (1086)
+|.|++.|+. ...++.+|++|++++.+.+.+++ |+ ..+.|..++.++..+.++..+++.++.. +..+..|++.+
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 8899999985 34578888888899999889888 77 6889999999999999998887766553 34478888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 977 EGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 977 ~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
.| +.+++.+++.++.... ...|+.+++.+.+
T Consensus 216 ~G-slR~al~lLdq~ia~~------~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAFG------SGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHhc------CCCcCHHHHHHHH
Confidence 87 6677777776555432 2356665555544
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=2.2e-14 Score=182.07 Aligned_cols=184 Identities=24% Similarity=0.329 Sum_probs=138.9
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEEe
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVK 841 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v~ 841 (1086)
-.++.++|+++..+++.+.+.. +...+++|+||||||||++|+++|... +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4678899999876666665542 345679999999999999999999886 78999998
Q ss_pred CCccc--cccccccHHHHHHHHHHHH-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEE
Q 001395 842 GPELF--SKWVGESEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 918 (1086)
Q Consensus 842 ~sel~--~~~vGese~~ir~lf~~A~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~ 918 (1086)
...++ .+|.|+.++.++.+|..+. ...++||||||+|.|.+.++..+ .....+.|...| .++.+.+|+
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-----~~d~~~~lkp~l----~~g~l~~Ig 312 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-----AMDAGNMLKPAL----ARGELHCVG 312 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-----chhHHHHhcchh----hcCCCeEEE
Confidence 88876 5688999999999999864 45789999999999986653221 122344444333 467899999
Q ss_pred ecCCCCC-----CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHcCCCc
Q 001395 919 ATNRPDK-----IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-----DVNIRELACLSEGCT 980 (1086)
Q Consensus 919 aTN~p~~-----lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-----d~~l~~La~~t~g~s 980 (1086)
||+..+. +|+|+.| ||+ .|+++.|+.+++..|++.....+.... +..+...+..+..|-
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 9998863 7999999 997 578999999999999998776654433 223444445555444
No 139
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=9.1e-14 Score=158.64 Aligned_cols=200 Identities=14% Similarity=0.157 Sum_probs=141.1
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPE 844 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~se 844 (1086)
.+.+|++++|++++++.|+.++.. ....++|||||||||||++|+++|+++ ...++++++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 345889999999999998877652 112359999999999999999999986 23467777766
Q ss_pred cccccccccHHHHHHHHHHHH-------hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 845 LFSKWVGESEKAVRSLFAKAR-------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~-------~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
..+ ...++..++... .....|++|||+|.+ +...++.|+..|+.. .....+|
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-------------t~~aq~aL~~~lE~~--~~~t~~i 133 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-------------TSGAQQALRRTMEIY--SNTTRFA 133 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-------------CHHHHHHHHHHHhcc--cCCceEE
Confidence 432 123343333211 134679999999976 445678888888743 3356678
Q ss_pred EecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 918 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 996 (1086)
Q Consensus 918 ~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~ 996 (1086)
++||....+.+++.+ |+ ..+.|++|+.++....++..+++.++. .+..+..++..+.| |++.+++..-..+.
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~~~ 206 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQATHS 206 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHh
Confidence 888989899999998 77 478999999999999999888766554 34557888888877 66666654432221
Q ss_pred HHhcCCCCCCHHHHHHHH
Q 001395 997 EENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 997 ~~~~~~~~It~~d~~~al 1014 (1086)
. ...|+.+++.+..
T Consensus 207 --~--~~~i~~~~v~~~~ 220 (319)
T PLN03025 207 --G--FGFVNQENVFKVC 220 (319)
T ss_pred --c--CCCCCHHHHHHHc
Confidence 1 2357766665443
No 140
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.2e-13 Score=165.80 Aligned_cols=203 Identities=19% Similarity=0.257 Sum_probs=147.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|++++|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+.+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 345899999999999999888763 234556899999999999999999987653
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.++.+++..- . ....++.+++.+. .+...|+||||+|.+ +...++.|
T Consensus 79 C~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~naL 139 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFNAL 139 (546)
T ss_pred HHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHHHH
Confidence 3344433211 1 1234555555443 234569999999965 56788999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
++.|+.. ...+++|++|+++..+.+.+++ |+ ..++|.+++.++....++..+++.++. .+..+..++..+.| +
T Consensus 140 LK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 140 LKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred HHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4578888888888888888888 77 689999999999998888888776654 33446778888876 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+++.+++..++... ...|+.+++++.+.
T Consensus 214 lR~alnlLek~i~~~------~~~It~~~V~~~l~ 242 (546)
T PRK14957 214 LRDALSLLDQAISFC------GGELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHHHHHHHHhc------cCCCCHHHHHHHHc
Confidence 667777776655432 24577666665543
No 141
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=7.4e-14 Score=163.34 Aligned_cols=223 Identities=22% Similarity=0.236 Sum_probs=147.9
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhh--CC-CCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc-ccccc
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRI--GT-RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVG 851 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~l--g~-~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~-~~~vG 851 (1086)
.|+|++++++.+..++....+.-...... .. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999977764322211100000 11 2346799999999999999999999999999999998875 46888
Q ss_pred ccHHH-HHHHHHH----HHhcCCeEEEEecCchhhhhcCCCCCCCC-ccHHHHHHHHHHHhccc-----------cCCCE
Q 001395 852 ESEKA-VRSLFAK----ARANAPSIIFFDEIDGLAAIRGKESDGVS-VSDRVMSQLLVELDGLH-----------QRVNV 914 (1086)
Q Consensus 852 ese~~-ir~lf~~----A~~~~p~ILflDEid~L~~~r~~~~~~~~-~~~~v~~~LL~~Ld~~~-----------~~~~v 914 (1086)
+.... +..++.. .....++||||||||.+...+...+.... ....+++.||+.|++.. ...+.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 76444 3444433 23356789999999999766432221111 23468999999998531 11234
Q ss_pred EEEEecCCCCC----------------------------------------------------CChhhhCCCCcceEeec
Q 001395 915 TVIAATNRPDK----------------------------------------------------IDPALLRPGRFDRLLYV 942 (1086)
Q Consensus 915 ~VI~aTN~p~~----------------------------------------------------lD~aLlrpgRFd~~I~~ 942 (1086)
++|.|+|-... +.|+++ ||+|.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 55666554100 234444 599999999
Q ss_pred CCCCHHHHHHHHHH----HHhc-------CCCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 943 GPPNETDREEIFRI----HLRK-------IPCS---SDVNIRELACL--SEGCTGADISLICREAAISAIEENL 1000 (1086)
Q Consensus 943 ~~P~~~eR~~Il~~----~l~~-------~~l~---~d~~l~~La~~--t~g~sgadl~~l~~~A~~~A~~~~~ 1000 (1086)
.+.+.++..+|+.. .+++ .++. .+.-++.|++. ..++-+|.|+.++++.+...+.+..
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999999999973 2221 1222 23336777775 3456678999999888877776653
No 142
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.57 E-value=1.2e-14 Score=175.83 Aligned_cols=267 Identities=24% Similarity=0.291 Sum_probs=174.1
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc-
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK- 848 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~- 848 (1086)
...+++|.+...+++.+.+... ...+..|||+|++||||+++|++|.... +.+|+.++|..+-..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 4678999999999988888742 2345679999999999999999998764 579999999876321
Q ss_pred ----cccc----cHHHH---HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------
Q 001395 849 ----WVGE----SEKAV---RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 909 (1086)
Q Consensus 849 ----~vGe----se~~i---r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-------- 909 (1086)
..|. ..... ...|..| ..++|||||||.| ...++.+|+..|+...
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-------------PLALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-------------CHHHHHHHHHHHhcCCEeeCCCCc
Confidence 1111 00011 1123333 3459999999965 5788899999986432
Q ss_pred -cCCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhc----CCCC-CcccHHHH
Q 001395 910 -QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRK----IPCS-SDVNIREL 972 (1086)
Q Consensus 910 -~~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~----~~l~-~d~~l~~L 972 (1086)
...++.||++||..-. .+...|+|.. .+.+..|...+|.+ ++++++++ ++.. ..+.-+.+
T Consensus 318 ~~~~~~RiI~~t~~~l~---~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLR---EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHH---HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1237899999987632 3333444432 45577788888755 44444432 2211 22333333
Q ss_pred HHHc-CCCc--HHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHhhC--------C--CchhHHHHHHHHHHHHHhc
Q 001395 973 ACLS-EGCT--GADISLICREAAISAIEENLD-ASRITMQHLKTAIRHVQ--------P--SEIHSYKELSAKFQRLVHS 1038 (1086)
Q Consensus 973 a~~t-~g~s--gadl~~l~~~A~~~A~~~~~~-~~~It~~d~~~al~~~~--------p--~~~~~~~~~~~~~~~~~~~ 1038 (1086)
.... ..|+ .++|++++++|+..+.....+ ...|+.+|+........ + .....+....+.+|+.++.
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~ 474 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIR 474 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCcccccccCccccccccccccccCHHHHHHHHHHHHHH
Confidence 2222 1344 599999999998877432111 11356666543211000 0 0111345556789999999
Q ss_pred cccccccccccccccccchh---HHHHHhhceEe
Q 001395 1039 NAEADESGYQLRPSKSIGSN---MWTLIKSISLF 1069 (1086)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~~ 1069 (1086)
.+...+.|++..+++.+|++ ||++||++||.
T Consensus 475 ~aL~~~~gn~~~aA~~LGisr~tL~rklk~~gi~ 508 (509)
T PRK05022 475 QALAQHQGNWAAAARALELDRANLHRLAKRLGLK 508 (509)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999 99999999873
No 143
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=4.7e-14 Score=164.24 Aligned_cols=191 Identities=22% Similarity=0.299 Sum_probs=134.5
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcE---------------
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF--------------- 837 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f--------------- 837 (1086)
.|++|+|++.+++.|++++.....+ +...+...+.++||+||+|+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5899999999999999999865432 2223445677899999999999999999998764421
Q ss_pred EEEeCCccc--cc-cccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc
Q 001395 838 LAVKGPELF--SK-WVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ 910 (1086)
Q Consensus 838 i~v~~sel~--~~-~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~ 910 (1086)
..-+-+++. .. -..-.-..+|++++.+.. +...|+||||+|.+ .....+.||+.|+..
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-------------~~~aanaLLk~LEep-- 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-------------TERAANALLKAVEEP-- 144 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-------------CHHHHHHHHHHhhcC--
Confidence 000111110 00 001123457888887754 33569999999976 456778999999853
Q ss_pred CCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHH
Q 001395 911 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLIC 988 (1086)
Q Consensus 911 ~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~ 988 (1086)
..++++|.+|++++.+.|++++ |+ ..++|++|+.++..+.+... .+.. ......++..+.|..++.++-+.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 4456666666679999999998 87 68999999999887777632 2332 34466788999998876665543
No 144
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.3e-13 Score=172.81 Aligned_cols=186 Identities=18% Similarity=0.164 Sum_probs=139.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
...+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|++||+.+.+
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 445899999999999999988863 234556899999999999999999998753
Q ss_pred ------------cEEEEeCCccccccccccHHHHHHHHHHH----HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHH
Q 001395 836 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 899 (1086)
Q Consensus 836 ------------~fi~v~~sel~~~~vGese~~ir~lf~~A----~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~ 899 (1086)
.|+.+++... ..-..+|++.+.+ ......|+||||+|.| +...+|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~a~N 138 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQGFN 138 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-------------CHHHHH
Confidence 2333333221 1233455554433 2345679999999976 567899
Q ss_pred HHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCC
Q 001395 900 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 978 (1086)
Q Consensus 900 ~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g 978 (1086)
.||+.|+.. ..++++|++|+.++.|-+.+.+ |+ .++.|..++.++..++|+..+++.++.. +..+..|++.+.|
T Consensus 139 aLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999854 4588888889999999999988 77 5889999999999999999887766653 3346677777776
Q ss_pred CcHHHHHHHHHHHH
Q 001395 979 CTGADISLICREAA 992 (1086)
Q Consensus 979 ~sgadl~~l~~~A~ 992 (1086)
+.+++.+++++.+
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 6677777776655
No 145
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.1e-13 Score=166.87 Aligned_cols=193 Identities=21% Similarity=0.251 Sum_probs=140.6
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEE---e----
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV---K---- 841 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v---~---- 841 (1086)
..+.+|++++|++.+++.|+..+.. -+.+..+||+||+|||||++|+++|+.+.+.--.. .
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 3456899999999999999998863 23556689999999999999999998865421000 0
Q ss_pred ------CCccc--cccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc
Q 001395 842 ------GPELF--SKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH 909 (1086)
Q Consensus 842 ------~sel~--~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~ 909 (1086)
..+++ ..........+|++.+.+.. +...|++|||+|.| +...++.|+..|+..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-------------T~~A~NALLKtLEEP- 145 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-------------SKSAFNALLKTLEEP- 145 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-------------CHHHHHHHHHHhhcC-
Confidence 01111 00000124557787777653 34569999999976 456789999999853
Q ss_pred cCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcCCCcHHHHHHHH
Q 001395 910 QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLIC 988 (1086)
Q Consensus 910 ~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~t~g~sgadl~~l~ 988 (1086)
...+++|++|+.++.|.+.+++ |+. ++.|.+++.++....++..+.+.++..+ ..+..+|..+.| +.+++..++
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL 220 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA 220 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 5578888899999999999998 884 8899999999999999888877665433 347778888887 556666666
Q ss_pred HHHH
Q 001395 989 REAA 992 (1086)
Q Consensus 989 ~~A~ 992 (1086)
..+.
T Consensus 221 ekl~ 224 (725)
T PRK07133 221 EQVS 224 (725)
T ss_pred HHHH
Confidence 6544
No 146
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.55 E-value=1.5e-14 Score=179.88 Aligned_cols=265 Identities=20% Similarity=0.258 Sum_probs=174.0
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 847 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~ 847 (1086)
..+|++++|.+...+++.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+-.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457899999999888887776642 2334569999999999999999998764 57999999976521
Q ss_pred -----cccccc----HHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc--------
Q 001395 848 -----KWVGES----EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-------- 910 (1086)
Q Consensus 848 -----~~vGes----e~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~-------- 910 (1086)
.+.|.. .......|+. ...++||||||+.| +..++..|+..|+...-
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYL-------------SPELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 112211 1101112222 34569999999965 67888999999864321
Q ss_pred -CCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhcC----CCCCccc---HHH
Q 001395 911 -RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRKI----PCSSDVN---IRE 971 (1086)
Q Consensus 911 -~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~~----~l~~d~~---l~~ 971 (1086)
..++.||+|||... ..+...|+|.. .+.+..|...+|.+ +++.+++.+ .....+. +..
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 12688999998753 23444455532 45677788888854 444554432 2111223 333
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC---chhHH--HHHHHHHHHHHhccccccccc
Q 001395 972 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS---EIHSY--KELSAKFQRLVHSNAEADESG 1046 (1086)
Q Consensus 972 La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~---~~~~~--~~~~~~~~~~~~~~~~~~~~~ 1046 (1086)
|....=.-+.++|+++++.|+..+ +...|+.+|+...+..-.+. ..... ....+.+|+.++..+.....+
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~-----~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~~~~g 605 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS-----DNGRIRLSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQVCGG 605 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC-----CCCeecHHHCchhhhcccccccccccccccchhHHHHHHHHHHHHHHHhCC
Confidence 333321224599999999877653 34568888887665331110 00011 112356889999999999999
Q ss_pred cccccccccchh---HHHHHhhceEee
Q 001395 1047 YQLRPSKSIGSN---MWTLIKSISLFL 1070 (1086)
Q Consensus 1047 ~~~~~~~~~g~~---L~~~~k~~~~~l 1070 (1086)
++..+++.+|+. ||+|||++|+..
T Consensus 606 n~~~aA~~LGisR~TLyrklk~~~i~~ 632 (638)
T PRK11388 606 RIQEMAALLGIGRTTLWRKMKQHGIDA 632 (638)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHcCCCc
Confidence 999999999999 999999999853
No 147
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.55 E-value=2e-14 Score=172.81 Aligned_cols=262 Identities=20% Similarity=0.254 Sum_probs=168.8
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH-----------hCCcEEEE
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE-----------AGLNFLAV 840 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~-----------~~~~fi~v 840 (1086)
..|++++|.+...+++++.+... ......|||+|++||||+++|++|... .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46889999999999888887632 234567999999999999999999776 46799999
Q ss_pred eCCccccc---------cccccHHH----HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhc
Q 001395 841 KGPELFSK---------WVGESEKA----VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 907 (1086)
Q Consensus 841 ~~sel~~~---------~vGese~~----ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~ 907 (1086)
+|..+-.. ..|..... -..+|+.|. ..+||||||+.| +..++..|+..|+.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-------------p~~~Q~kLl~~L~e 348 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-------------PLPLQTRLLRVLEE 348 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-------------CHHHHHHHHhhhhc
Confidence 99765221 11111111 123455443 349999999965 67889999999964
Q ss_pred cc---------cCCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhc----CCC
Q 001395 908 LH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRK----IPC 963 (1086)
Q Consensus 908 ~~---------~~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~----~~l 963 (1086)
.. ...++.||++||..-. .+...|+|.. .+.+..|...+|.+ ++++++++ ...
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~---~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLE---EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHH---HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 32 1236799999987632 3444556653 45677888888865 45555544 222
Q ss_pred CCccc-HH---HHHH--HcCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHHH
Q 001395 964 SSDVN-IR---ELAC--LSEGCT--GADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRL 1035 (1086)
Q Consensus 964 ~~d~~-l~---~La~--~t~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~~~~~~~~~~~~~~~~ 1035 (1086)
.-..+ +. .... ....|. .++|++++++++..+-.. ....|+.+++............. .. ...+++.
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~--~~~~i~~~~l~~~~~~~~~~~~~-~~--~~~~Er~ 500 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVE--PTPDLTPQFLQLLLPELARESAK-TP--APRLLAA 500 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCC--CcCccCHHHhhhhcccccccccc-cc--hhHHHHH
Confidence 21111 10 1111 122344 499999999988754211 12356666654221111110000 00 1235777
Q ss_pred Hhccccccccccccccccccchh---HHHHHhhceE
Q 001395 1036 VHSNAEADESGYQLRPSKSIGSN---MWTLIKSISL 1068 (1086)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~ 1068 (1086)
++..+...+.++...+++.+|+. ||++||++|.
T Consensus 501 ~I~~~L~~~~Gn~~~aA~~LGIsRtTL~RkLk~~g~ 536 (538)
T PRK15424 501 TLQQALERFNGDKTAAANYLGISRTTLWRRLKAEAK 536 (538)
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 88888899999999999999988 9999999875
No 148
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.3e-13 Score=166.45 Aligned_cols=202 Identities=20% Similarity=0.242 Sum_probs=147.7
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|++++|++++++.|..++.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 345899999999999999988763 2345668999999999999999999987542
Q ss_pred -----------EEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 837 -----------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 837 -----------fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
++.+++.. ......+|++...+.. +...|+||||+|.| +...++.|
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-------------s~~a~naL 139 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-------------SKSAFNAM 139 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-------------CHHHHHHH
Confidence 23333221 1124557777776643 33469999999965 45678999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g~s 980 (1086)
++.|+. ...++.+|++|++++.+.+.+++ |+ ..+.|+.++.++..+.+...+++.++.. +..+..+++.+.| +
T Consensus 140 LK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-s 213 (527)
T PRK14969 140 LKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-S 213 (527)
T ss_pred HHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999985 34578888888889888888887 77 6889999999999988888887655542 3346778888876 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
.+++.+++..+.... ...|+.+++...+
T Consensus 214 lr~al~lldqai~~~------~~~I~~~~v~~~~ 241 (527)
T PRK14969 214 MRDALSLLDQAIAYG------GGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHHHhc------CCCcCHHHHHHHH
Confidence 777777777665431 3345655555443
No 149
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.54 E-value=1.2e-13 Score=150.20 Aligned_cols=183 Identities=21% Similarity=0.232 Sum_probs=134.6
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC------cEEEEeC
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------NFLAVKG 842 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------~fi~v~~ 842 (1086)
..+-+++++.||+.+++.|+..+.. +...++|||||||||||+.|+++|+++.. .+.+.++
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 3455899999999999999988863 23456999999999999999999998765 3345555
Q ss_pred CccccccccccHHHHHHHHHHHHhcC----------CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCC
Q 001395 843 PELFSKWVGESEKAVRSLFAKARANA----------PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 912 (1086)
Q Consensus 843 sel~~~~vGese~~ir~lf~~A~~~~----------p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~ 912 (1086)
++..+..++. .. ..-|++..... +.|++|||.|.+ +...++.|.+.|+.. ..
T Consensus 97 SderGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~--s~ 158 (346)
T KOG0989|consen 97 SDERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDF--SR 158 (346)
T ss_pred cccccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhcc--cc
Confidence 5544433221 11 11233332222 269999999976 567899999999974 45
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcCCCcHHHHHHHHH
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICR 989 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~t~g~sgadl~~l~~ 989 (1086)
.+++|..||..+.|...+.+ |+. .+.|+....+.....|+....+.++.-+ ..++.++..++| |++.++.
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait 229 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAIT 229 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHH
Confidence 78999999999999999998 885 5667877788888888888877777643 347888888888 6655543
No 150
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.1e-13 Score=165.21 Aligned_cols=187 Identities=19% Similarity=0.197 Sum_probs=139.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|+||+|++.+++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 345899999999999999998863 234556899999999999999999987653
Q ss_pred ------------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHH
Q 001395 836 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 899 (1086)
Q Consensus 836 ------------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~ 899 (1086)
+++.+++... ..-..+|++...+. .....|+||||+|.| +...++
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-------------t~~A~N 136 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-------------TTAGFN 136 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-------------CHHHHH
Confidence 2333433221 12344555554443 234569999999966 456899
Q ss_pred HHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCC
Q 001395 900 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 978 (1086)
Q Consensus 900 ~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g 978 (1086)
.||+.|+. ...++++|++|+.++.|.+++.+ |+ .++.|..++.++..+.++..+++.+.. .+..+..++..+.|
T Consensus 137 ALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999985 35588999999999999999998 76 588999999999999999888876654 33345667777765
Q ss_pred CcHHHHHHHHHHHHH
Q 001395 979 CTGADISLICREAAI 993 (1086)
Q Consensus 979 ~sgadl~~l~~~A~~ 993 (1086)
+.+++.++++.++.
T Consensus 212 -dlR~aln~Ldql~~ 225 (584)
T PRK14952 212 -SPRDTLSVLDQLLA 225 (584)
T ss_pred -CHHHHHHHHHHHHh
Confidence 66777777776554
No 151
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.4e-13 Score=164.22 Aligned_cols=203 Identities=21% Similarity=0.260 Sum_probs=142.5
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------ 836 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------ 836 (1086)
..+.+|+||+|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 3456899999999999999988863 1335679999999999999999999987642
Q ss_pred ------------EEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 837 ------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 837 ------------fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
++.+++..- ..-..+|.+.+.+. .....||||||+|.| +...++.
T Consensus 78 sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-------------t~~a~na 138 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-------------TREAFNA 138 (624)
T ss_pred HHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-------------CHHHHHH
Confidence 444443211 11223444333322 344579999999976 4567899
Q ss_pred HHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCC
Q 001395 901 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGC 979 (1086)
Q Consensus 901 LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~ 979 (1086)
|++.|+.. ...+++|++||.++.+.+.+++ |+. ++.|+.++.++...+|+..+.+.++. .+..++.+++.+.|
T Consensus 139 LLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G- 212 (624)
T PRK14959 139 LLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG- 212 (624)
T ss_pred HHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99999853 4578899999999999888888 874 78899999999999998888766653 34457788888877
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+.+++.+++.+++ + .....|+.+++..++
T Consensus 213 dlR~Al~lLeqll--~----~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 SVRDSMSLLGQVL--A----LGESRLTIDGARGVL 241 (624)
T ss_pred CHHHHHHHHHHHH--H----hcCCCcCHHHHHHHh
Confidence 4444545554432 1 123356666554433
No 152
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.54 E-value=3e-14 Score=162.86 Aligned_cols=260 Identities=17% Similarity=0.198 Sum_probs=165.9
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc--
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK-- 848 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~-- 848 (1086)
+++++|.+...+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+-..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 567899999988888887642 2345679999999999999999997654 579999999875211
Q ss_pred ---cccccH----H---HHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--c------
Q 001395 849 ---WVGESE----K---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--Q------ 910 (1086)
Q Consensus 849 ---~vGese----~---~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~------ 910 (1086)
+.|... . .....+.. ....+||||||+.| ...++..|+..|+... .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA-------------PMLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 111110 0 01122333 33459999999966 5778889999886432 1
Q ss_pred -CCCEEEEEecCCCC-------CCChhhhCCCCcceEeecCCCCHHHHHH----HHHHHHh----cCCCC--CcccHHHH
Q 001395 911 -RVNVTVIAATNRPD-------KIDPALLRPGRFDRLLYVGPPNETDREE----IFRIHLR----KIPCS--SDVNIREL 972 (1086)
Q Consensus 911 -~~~v~VI~aTN~p~-------~lD~aLlrpgRFd~~I~~~~P~~~eR~~----Il~~~l~----~~~l~--~d~~l~~L 972 (1086)
..++.||++|+..- .+.+.|.. ||. .+.+..|...+|.+ ++++++. +++.. ..++-+.+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 13589999987642 34455555 553 34566677877755 4455443 32221 12333333
Q ss_pred HHHc-CCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHH-----HHHH--H--hhC-----CCchhHHHHHHHHHHHH
Q 001395 973 ACLS-EGCT--GADISLICREAAISAIEENLDASRITMQHL-----KTAI--R--HVQ-----PSEIHSYKELSAKFQRL 1035 (1086)
Q Consensus 973 a~~t-~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~-----~~al--~--~~~-----p~~~~~~~~~~~~~~~~ 1035 (1086)
.... ..|. .++|++++++|+..+-. ..++.+++ .... . ... +.....+..+.+.+|+.
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Er~ 289 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRHGT-----SEYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDLREWQHQQEKE 289 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCC-----CCCchhhcccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence 3222 2344 48999999998875421 12222222 0000 0 000 11101355556789999
Q ss_pred Hhccccccccccccccccccchh---HHHHHhhceE
Q 001395 1036 VHSNAEADESGYQLRPSKSIGSN---MWTLIKSISL 1068 (1086)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~ 1068 (1086)
++..+.....++...+++.+|+. ||+|||++|+
T Consensus 290 ~I~~aL~~~~gn~~~aA~~LGIsR~tLyrklk~~gi 325 (326)
T PRK11608 290 LLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKHQI 325 (326)
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999 9999999986
No 153
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.7e-13 Score=163.17 Aligned_cols=182 Identities=17% Similarity=0.289 Sum_probs=133.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++++|++.+++.|+.++... ..+..+||+|||||||||+|+++|+.+++
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~ 79 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRS 79 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHH
Confidence 45789999999999888877654 23456899999999999999999998865
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.++.+++..- .| -..++.+.+.+. .....||||||+|.+. ......|+..|+
T Consensus 80 i~~g~~~dv~el~aa~~----~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk~LE 142 (472)
T PRK14962 80 IDEGTFMDVIELDAASN----RG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLKTLE 142 (472)
T ss_pred HhcCCCCccEEEeCccc----CC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHHHHH
Confidence 3555554321 11 123444444432 1235699999999883 345567888887
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+++|++|+.+..+++++++ |+. .+.+ .+++.++...+++..+...+..+++..++.
T Consensus 143 ~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f--------------~~l~~~el~~~L~~i~~~egi~i~~eal~~ 203 (472)
T PRK14962 143 EP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEF--------------RNISDELIIKRLQEVAEAEGIEIDREALSF 203 (472)
T ss_pred hC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEE--------------CCccHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 63 4568888888888899999998 774 6677 899999999999999887777888999999
Q ss_pred HHHHcCCCcHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCN 637 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~ 637 (1086)
|+..+.| ..+++.+++.
T Consensus 204 Ia~~s~G-dlR~aln~Le 220 (472)
T PRK14962 204 IAKRASG-GLRDALTMLE 220 (472)
T ss_pred HHHHhCC-CHHHHHHHHH
Confidence 9998776 3444444443
No 154
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.54 E-value=1.8e-14 Score=175.40 Aligned_cols=265 Identities=19% Similarity=0.213 Sum_probs=170.3
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 847 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~ 847 (1086)
...+++++|.+...+++.+.+... ......|||+|++|||||++|++|.... +.+|+.++|..+-.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 457889999999999988887642 2345669999999999999999998774 67999999987632
Q ss_pred cc-----ccc----cHHHH---HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--c---
Q 001395 848 KW-----VGE----SEKAV---RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--Q--- 910 (1086)
Q Consensus 848 ~~-----vGe----se~~i---r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~--- 910 (1086)
.+ .|. ..... ...|.. ....+||||||+.| +...+..|+..|+... .
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEI-------------SPAFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhC-------------CHHHHHHHHHHHhcCcEEECCC
Confidence 11 011 00000 011222 23569999999965 6778899999986432 1
Q ss_pred ----CCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHH----HHHHHHHhc----CCCCCccc---
Q 001395 911 ----RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHLRK----IPCSSDVN--- 968 (1086)
Q Consensus 911 ----~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~----~Il~~~l~~----~~l~~d~~--- 968 (1086)
..++.+|++|+..-. .+...|+|.. .+.+..|...+|. .++++++.. .+....++
T Consensus 325 ~~~~~~~~riI~~s~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLE---EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCCHH---HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 135899999986521 2333444532 3445566666653 355555543 22222223
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC----------------C--------Cc---
Q 001395 969 IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ----------------P--------SE--- 1021 (1086)
Q Consensus 969 l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~----------------p--------~~--- 1021 (1086)
+..|....=.-+.++|+++++.|+..+ +...|+.+|+...+.... + ..
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~-----~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS-----RSGTITRSDFSCQSGQCLSPMLAKTCPHGHISIDPLAGTTPPHSPASA 476 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC-----CCCcccHHHCchhhcccccccccccccccccccccccccccccccccc
Confidence 333333321124599999999888654 345677777752221000 0 00
Q ss_pred ---hh-HHHHHHHHHHHHHhccccccccccccccccccchh---HHHHHhhceEeee
Q 001395 1022 ---IH-SYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN---MWTLIKSISLFLC 1071 (1086)
Q Consensus 1022 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~~l~ 1071 (1086)
.. .... .+.+|+.++..+...+.|++..+++.+|+. ||++||++|+...
T Consensus 477 ~~~~~~~~~~-~~~~Er~~i~~aL~~~~gn~~~aA~~LGisr~tLy~klk~~gi~~~ 532 (534)
T TIGR01817 477 ALPGEPGLSG-PTLSERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLNIEMK 532 (534)
T ss_pred cccccccchh-HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHcCCCcC
Confidence 00 0111 345899999999999999999999999998 9999999998654
No 155
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.53 E-value=3.2e-13 Score=154.63 Aligned_cols=210 Identities=23% Similarity=0.311 Sum_probs=144.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC-----CcEEEEeCCc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGPE 844 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~-----~~fi~v~~se 844 (1086)
.+.+|++++|++.+++.|..++.. ....+++|+||||||||++|+++++++. .+++.+++.+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 445799999999999999888763 1123699999999999999999999863 4578888876
Q ss_pred ccccc-------------ccc-------cHHHHHHHHHHHHh-----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHH
Q 001395 845 LFSKW-------------VGE-------SEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 899 (1086)
Q Consensus 845 l~~~~-------------vGe-------se~~ir~lf~~A~~-----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~ 899 (1086)
+...+ .+. ....++.+.+.... ..+.+|||||+|.+ ....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-------------~~~~~~ 143 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-------------REDAQQ 143 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-------------CHHHHH
Confidence 54221 111 11223333333322 23469999999966 334566
Q ss_pred HHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCC
Q 001395 900 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 978 (1086)
Q Consensus 900 ~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g 978 (1086)
.|...|+... ....+|++|+.+..+.+.+.+ |+ ..+.|.+|+.++...+++..+++.++. .+..++.|+..+.|
T Consensus 144 ~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 144 ALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777776543 245566677777777788877 76 578899999999999999988776654 44557788888765
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 979 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 979 ~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
+++.+++.....+. ....||.+++..++....
T Consensus 219 ----dlr~l~~~l~~~~~----~~~~It~~~v~~~~~~~~ 250 (337)
T PRK12402 219 ----DLRKAILTLQTAAL----AAGEITMEAAYEALGDVG 250 (337)
T ss_pred ----CHHHHHHHHHHHHH----cCCCCCHHHHHHHhCCCC
Confidence 56555554443331 234799999888776533
No 156
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2e-13 Score=166.66 Aligned_cols=187 Identities=22% Similarity=0.255 Sum_probs=141.2
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|++|+|++++++.|+..+.. -+.+..+|||||+|||||++|+++|+.+.+
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 345899999999999999988863 245667899999999999999999988653
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
+++++++..- .....+|++...+.. ....|+||||+|.| +...++.|
T Consensus 79 c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-------------t~~a~naL 139 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-------------STNAFNAL 139 (576)
T ss_pred HHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhC-------------CHHHHHHH
Confidence 2444443321 124457777766643 23469999999966 45678999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
++.|+. +..++++|++|+.++.|.+.+++ |+ ..+.|..++.++....++..+++.++. .+..+..+++.+.| +
T Consensus 140 Lk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 999985 35588999999999999999998 77 478899999999888888888776654 34457778888887 5
Q ss_pred HHHHHHHHHHHHH
Q 001395 981 GADISLICREAAI 993 (1086)
Q Consensus 981 gadl~~l~~~A~~ 993 (1086)
.+++.+++..+..
T Consensus 214 lr~al~~Ldqlia 226 (576)
T PRK14965 214 MRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666655443
No 157
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.53 E-value=3.2e-13 Score=155.98 Aligned_cols=203 Identities=22% Similarity=0.270 Sum_probs=147.2
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+..|++++|++.+++.|.+.+.. ...+..+|||||||+|||++|+++|+.+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 456899999999999999988763 234567999999999999999999988642
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHHhc----CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~~----~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
+++.+++.+ ......++.++..+... ...|++|||+|.+ ....++.|
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-------------~~~~~~~L 137 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-------------SKSAFNAL 137 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-------------CHHHHHHH
Confidence 234444321 12344567777766432 3459999999966 34568889
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
+..|+.. ..++++|++|++++.+.+++.+ |+ ..+.|++|+.++..++++..+++.+.. .+..+..++..+.| +
T Consensus 138 l~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~ 211 (355)
T TIGR02397 138 LKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-S 211 (355)
T ss_pred HHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9998753 4477888888989888899988 87 478999999999999999988876654 33456777887776 5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 212 ~~~a~~~lekl~~~~------~~~it~~~v~~~~~ 240 (355)
T TIGR02397 212 LRDALSLLDQLISFG------NGNITYEDVNELLG 240 (355)
T ss_pred hHHHHHHHHHHHhhc------CCCCCHHHHHHHhC
Confidence 566666666555432 23477777765543
No 158
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=1.8e-13 Score=171.69 Aligned_cols=221 Identities=19% Similarity=0.266 Sum_probs=154.2
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc--------
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-------- 846 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~-------- 846 (1086)
.+..|++.+|+++.+++..... .+......++|+||||||||++|+++|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4588999999999988763211 1122334599999999999999999999999999999865532
Q ss_pred -cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcc-------------ccCC
Q 001395 847 -SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------------HQRV 912 (1086)
Q Consensus 847 -~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~-------------~~~~ 912 (1086)
..|+|.....+...+..+....| ||||||+|.+..... ....+.|+..||.- ....
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~---------g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR---------GDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC---------CCHHHHHHHHhccccEEEEecccccccccCC
Confidence 24777777777777777665566 899999998854321 12356777777631 1236
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc-----CCCC------CcccHHHHHHH-cCCCc
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-----IPCS------SDVNIRELACL-SEGCT 980 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~-----~~l~------~d~~l~~La~~-t~g~s 980 (1086)
++++|+|||.. .|+++|+. ||+ +|.|..++.++..+|.+.++.. ..+. .+.-+..+++. +..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 89999999887 59999998 995 8899999999999999988831 1111 12224555532 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHh
Q 001395 981 GADISLICREAAISAIEENL-----DASRITMQHLKTAIRH 1016 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~-----~~~~It~~d~~~al~~ 1016 (1086)
.|.++.+++..+...+.+.+ ....|+.+++.+.+..
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCC
Confidence 56777666665555554432 2236888888877754
No 159
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.53 E-value=1.2e-13 Score=164.67 Aligned_cols=189 Identities=17% Similarity=0.270 Sum_probs=136.5
Q ss_pred CCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccHHH-HHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 810 TGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKA-VRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese~~-ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
..++||||||||||+|++++++++ +..++.+++.++...++...... ...+.+..+ .+++|+|||+|.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 459999999999999999999886 56788899888765544332211 222222222 4679999999987432
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHH
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l 958 (1086)
+..+..|+..++........+||+++..|.. +++.+.+ ||. .++.+.+|+.++|.+|++..+
T Consensus 227 -----------~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 227 -----------ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred -----------HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 2345566666665544444555555555544 6788887 986 589999999999999999999
Q ss_pred hcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 959 RKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 959 ~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
+..++. .+..++.||....| +.+++..+++.....+... ...||.+.+++++..+
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~---~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT---GKPITLELAKEALKDL 349 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHh
Confidence 865543 44457888888876 7889988988877666544 3569999999999876
No 160
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.53 E-value=6.3e-14 Score=160.24 Aligned_cols=255 Identities=16% Similarity=0.184 Sum_probs=158.5
Q ss_pred cccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccccc----
Q 001395 777 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW---- 849 (1086)
Q Consensus 777 i~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~---- 849 (1086)
++|.+...+++.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+-...
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 356777777777666532 2345669999999999999999997654 5799999997653211
Q ss_pred -ccc----cHHH---HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCC
Q 001395 850 -VGE----SEKA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 912 (1086)
Q Consensus 850 -vGe----se~~---ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~ 912 (1086)
.|. .... ....|..| ..++||||||+.| ...++..|+..|+... ...
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HhccccccccCcccccCCchhhC---CCCEEEeCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceecc
Confidence 111 0000 11123333 3459999999965 6788999999986432 124
Q ss_pred CEEEEEecCCCC-------CCChhhhCCCCcceEeecCCCCHHHHHH----HHHHHHhc----CCCC--CcccHHHHHHH
Q 001395 913 NVTVIAATNRPD-------KIDPALLRPGRFDRLLYVGPPNETDREE----IFRIHLRK----IPCS--SDVNIRELACL 975 (1086)
Q Consensus 913 ~v~VI~aTN~p~-------~lD~aLlrpgRFd~~I~~~~P~~~eR~~----Il~~~l~~----~~l~--~d~~l~~La~~ 975 (1086)
++.||++||..- .+.+.|.. ||. .+.+..|...+|.+ ++++++.. .+.. ..+.-+.+...
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 689999998652 23344444 443 45677788887755 44444432 2222 12333333222
Q ss_pred c-CCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-----------HHHHhhC-----------C-----CchhHH
Q 001395 976 S-EGCT--GADISLICREAAISAIEENLDASRITMQHLK-----------TAIRHVQ-----------P-----SEIHSY 1025 (1086)
Q Consensus 976 t-~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~-----------~al~~~~-----------p-----~~~~~~ 1025 (1086)
. ..|. .++|++++++++..+- ...++.+++. ....... + .....+
T Consensus 211 ~~y~WPGNvrEL~n~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (329)
T TIGR02974 211 LEYHWPGNVRELKNVVERSVYRHG-----LEEAPIDEIIIDPFASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDL 285 (329)
T ss_pred HhCCCCchHHHHHHHHHHHHHhCC-----CCccchhhccccccccccccccccccccccccccccccccccccccccccH
Confidence 2 1234 5899999998887651 1123322210 0000000 0 000135
Q ss_pred HHHHHHHHHHHhccccccccccccccccccchh---HHHHHhhc
Q 001395 1026 KELSAKFQRLVHSNAEADESGYQLRPSKSIGSN---MWTLIKSI 1066 (1086)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~ 1066 (1086)
++..+.+|+.++..+...+.|+...+++.+|++ ||++||++
T Consensus 286 ~~~l~~~E~~~I~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~ 329 (329)
T TIGR02974 286 KQAQQDYEIELLQQALAEAQFNQRKAAELLGLTYHQLRGLLRKH 329 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHhC
Confidence 555677999999999999999999999999999 99999985
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=2.1e-13 Score=173.76 Aligned_cols=200 Identities=24% Similarity=0.309 Sum_probs=148.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v 840 (1086)
+-.++.++|.++..+++.+.+. .+...+++|+||||||||++|+++|... +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3467889999997766666554 2345679999999999999999999874 6788988
Q ss_pred eCCccc--cccccccHHHHHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 841 KGPELF--SKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 841 ~~sel~--~~~vGese~~ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
+...++ .+|.|+.++.++.+|+.+.. ..++||||||||.|.+.+...+ ...+.+.|...+ .++.+.+|
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-----~~d~~~~Lk~~l----~~g~i~~I 306 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-----AMDAGNMLKPAL----ARGELHCI 306 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-----hhHHHHHhchhh----hcCceEEE
Confidence 887775 56889999999999998865 4589999999999976443221 122333333332 46689999
Q ss_pred EecCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHcCCCcH-----H
Q 001395 918 AATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-----VNIRELACLSEGCTG-----A 982 (1086)
Q Consensus 918 ~aTN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-----~~l~~La~~t~g~sg-----a 982 (1086)
++|+..+ .+|+++.| ||. .|+++.|+.+++..|++.+...+..... ..+..++..+.+|-. .
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPd 383 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCch
Confidence 9999774 47999999 996 5789999999999999988877665433 346666777776652 3
Q ss_pred HHHHHHHHHHHHH
Q 001395 983 DISLICREAAISA 995 (1086)
Q Consensus 983 dl~~l~~~A~~~A 995 (1086)
-.-.++.+|+...
T Consensus 384 kAidlld~a~a~~ 396 (852)
T TIGR03346 384 KAIDLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566666544
No 162
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.53 E-value=2.4e-14 Score=172.17 Aligned_cols=261 Identities=20% Similarity=0.247 Sum_probs=168.9
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCcccc-
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFS- 847 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~- 847 (1086)
..|++++|.+...+.+++.+... ......|||+|++||||+++|++|... .+.||+.++|..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 57889999999999888887632 234567999999999999999999765 467999999976522
Q ss_pred --------ccccccHH----HHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc------
Q 001395 848 --------KWVGESEK----AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 909 (1086)
Q Consensus 848 --------~~vGese~----~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~------ 909 (1086)
..-|.+.. .-..+|+.|. ..+||||||+.| +..++..|+..|+...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-------------p~~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-------------PLPLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-------------CHHHHHHHHHHHhcCcEEecCC
Confidence 11111111 1123444443 349999999965 6788999999986432
Q ss_pred ---cCCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhcCCCC--CcccHHHHH
Q 001395 910 ---QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRKIPCS--SDVNIRELA 973 (1086)
Q Consensus 910 ---~~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~~~l~--~d~~l~~La 973 (1086)
...++.||++||..-. .+...|+|.. .+.+..|+..+|.+ ++++++++.... ....-+.+.
T Consensus 342 ~~~~~~dvRiIaat~~~l~---~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 418 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALT---TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQ 418 (526)
T ss_pred CceeeecceEEeccCCCHH---HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1235789999987642 2333344432 45677788888765 455555433111 012211111
Q ss_pred H--------HcCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC---CC---chhHHHHHHHHHHHHHh
Q 001395 974 C--------LSEGCT--GADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ---PS---EIHSYKELSAKFQRLVH 1037 (1086)
Q Consensus 974 ~--------~t~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~---p~---~~~~~~~~~~~~~~~~~ 1037 (1086)
. ....|+ .++|++++++++..+... +...|+.+++........ +. ....+... +.+++.++
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~--~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~Er~~I 495 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAM--PAGALTPDVLRALAPELAEASGKGKTSALSLRER-SRVEALAV 495 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccC--CCCccCHHHhhhhchhhcccccccccCccchHHH-HHHHHHHH
Confidence 1 122344 489999999988764211 134678777653332210 00 00112233 57899999
Q ss_pred ccccccccccccccccccchh---HHHHHhh
Q 001395 1038 SNAEADESGYQLRPSKSIGSN---MWTLIKS 1065 (1086)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~g~~---L~~~~k~ 1065 (1086)
..+...+.++...+++.+|+. ||++||+
T Consensus 496 ~~aL~~~~Gn~~~aA~~LGIsRtTL~Rklk~ 526 (526)
T TIGR02329 496 RAALERFGGDRDAAAKALGISRTTLWRRLKA 526 (526)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 999999999999999999999 9999985
No 163
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.7e-13 Score=162.99 Aligned_cols=186 Identities=20% Similarity=0.243 Sum_probs=138.5
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|++++|++.+++.|..++.. -+.+.++||+||+|||||++|+++|+.+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 345899999999999999888753 244567999999999999999999988642
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.++.+++... ..-..+|.+...+.. +...|++|||+|.| +...++.|
T Consensus 79 Cr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-------------t~~A~NaL 139 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-------------STSAWNAL 139 (605)
T ss_pred HHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-------------CHHHHHHH
Confidence 3344433221 123456777665543 23469999999966 34578899
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
+..|+.. ...+++|++|+.++.|.+++++ |+. ++.|++++.++....++..+.+.+.. .+..+..++..+.| +
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9999853 4578888899999999999998 874 78999999999999999888766543 34457778888877 5
Q ss_pred HHHHHHHHHHHH
Q 001395 981 GADISLICREAA 992 (1086)
Q Consensus 981 gadl~~l~~~A~ 992 (1086)
.+++.+.++.++
T Consensus 214 lR~AlnlLekL~ 225 (605)
T PRK05896 214 LRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 164
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2e-13 Score=164.05 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=140.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|++.+++.|+.++... +.+..+||+||+|||||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 46789999999999999988644 23567899999999999999999999865
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.++.+++.+-. .-..++.+.+.+. .+...|+||||+|.|- ....+.|+..|+
T Consensus 81 I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLKtLE 143 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLKTLE 143 (702)
T ss_pred HhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHh
Confidence 34555543211 1223555554432 2345799999999883 345678888888
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+.||++|+.+..+.+.+++ |+. .+.+ ..++.++..+.++..+.+.+..+++..+..
T Consensus 144 EP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feF--------------kpLs~eEI~k~L~~Il~kEgI~id~eAL~~ 204 (702)
T PRK14960 144 EP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTL--------------RPLAVDEITKHLGAILEKEQIAADQDAIWQ 204 (702)
T ss_pred cC--CCCcEEEEEECChHhhhHHHHH--hhh-eeec--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 63 4567888888888888888876 663 4555 889999999999999988888889999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
+++.+.| +.+++.+++..+.
T Consensus 205 IA~~S~G-dLRdALnLLDQaI 224 (702)
T PRK14960 205 IAESAQG-SLRDALSLTDQAI 224 (702)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9998877 7777777776654
No 165
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.5e-13 Score=167.50 Aligned_cols=185 Identities=21% Similarity=0.293 Sum_probs=136.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+.++.... .+..+||+|||||||||+||++|+.+++.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-----------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-----------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-----------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 467899999999999998886542 24457999999999999999999998663
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.+++.+ .. .-..++.+.+.+. .+...|+||||+|.| .....+.|+..|+
T Consensus 82 i~~g~~~DviEidAas----~~--kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtLE 144 (944)
T PRK14949 82 IAQGRFVDLIEVDAAS----RT--KVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTLE 144 (944)
T ss_pred HhcCCCceEEEecccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHHh
Confidence 12222211 00 1122444444332 234569999999998 3567788999998
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+.||++|+.+..|.+.+++ |+ ..+.| ..++.++..+.|+..+...+..+++..++.
T Consensus 145 EP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~f--------------kpLs~eEI~~~L~~il~~EgI~~edeAL~l 205 (944)
T PRK14949 145 EP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNL--------------KSLTQDEIGTQLNHILTQEQLPFEAEALTL 205 (944)
T ss_pred cc--CCCeEEEEECCCchhchHHHHH--hh-eEEeC--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 73 4577888889999999989888 66 34555 889999999999888877677778889999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
|+..+.| ..+++.+++..+.
T Consensus 206 IA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 206 LAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9998887 5667777766544
No 166
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=6.6e-13 Score=158.87 Aligned_cols=203 Identities=21% Similarity=0.224 Sum_probs=149.5
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|++++|++.+++.|+..+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 445899999999999999988863 235566899999999999999999987632
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.++.+++..- ..-..+|++...+.. +...|++|||+|.+ +...++.|
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~NAL 137 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAFNAL 137 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHH
Confidence 2333333211 113456776665432 23459999999965 56788999
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
++.|+.. ...+.+|++|+++..|.+++.+ |+ .+++|.+++.++....++..+++.+.. .+..+..+++.+.| +
T Consensus 138 LK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9999864 4567888888889999999998 86 588999999999999998888776554 34457788888887 7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+++.+++..++..+ ...||.+++...+.
T Consensus 212 lR~alnlLdqai~~~------~~~It~~~V~~~lg 240 (535)
T PRK08451 212 LRDTLTLLDQAIIYC------KNAITESKVADMLG 240 (535)
T ss_pred HHHHHHHHHHHHHhc------CCCCCHHHHHHHhC
Confidence 777777777766554 23466666665543
No 167
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.8e-13 Score=164.96 Aligned_cols=185 Identities=20% Similarity=0.289 Sum_probs=138.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+..+.... .+..+||+||+||||||+|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-----------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-----------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 467899999999999998886541 24458999999999999999999988662
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.+++.+- . .-..++.+.+.+ ..+...|+||||+|.| .....+.||..|+
T Consensus 82 i~~g~~~D~ieidaas~----~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALLKtLE 144 (647)
T PRK07994 82 IEQGRFVDLIEIDAASR----T--KVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLKTLE 144 (647)
T ss_pred HHcCCCCCceeeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHHHHHH
Confidence 344444320 1 112244444332 2344579999999988 3456788999998
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
. ..+.+.||++|+.+..|.+.+++ |+ ..+.| ..++.++..+.|+..+...+...++..+..
T Consensus 145 E--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f--------------~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~ 205 (647)
T PRK07994 145 E--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHL--------------KALDVEQIRQQLEHILQAEQIPFEPRALQL 205 (647)
T ss_pred c--CCCCeEEEEecCCccccchHHHh--hh-eEeeC--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7 34678888889999999999988 75 45666 899999999999998877777778888999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
++..+.| +.++...++..+.
T Consensus 206 Ia~~s~G-s~R~Al~lldqai 225 (647)
T PRK07994 206 LARAADG-SMRDALSLTDQAI 225 (647)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9988887 5666666766553
No 168
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=2.3e-13 Score=160.29 Aligned_cols=190 Identities=17% Similarity=0.277 Sum_probs=135.1
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccHH-HHHHHHHHHHhcCCeEEEEecCchhhh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese~-~ir~lf~~A~~~~p~ILflDEid~L~~ 882 (1086)
...++||||+|||||+|++++++++ +..++.+++.++...++..... .+....+..+ .+++|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3458999999999999999999875 5788899988776544332211 1222222222 356999999998743
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHH
Q 001395 883 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIH 957 (1086)
Q Consensus 883 ~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~ 957 (1086)
. +..+..|+..++........+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..
T Consensus 214 ~-----------~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 214 K-----------ERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred C-----------HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 2 2344556666665544444555555555544 5677887 886 47999999999999999999
Q ss_pred HhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 958 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 958 l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
++..++. .+..++.||....+ +.++++.+++.....|... ...||.+.+.+++...
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~---~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT---GKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHh
Confidence 9876654 44457888888876 7899999999877766543 3569999998888765
No 169
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6e-13 Score=159.13 Aligned_cols=203 Identities=21% Similarity=0.268 Sum_probs=145.2
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------- 835 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------- 835 (1086)
..+.+|++++|++.+++.|+.++.. -+.+..+|||||+|+|||++|+++|..+++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 3455899999999999999988863 234556899999999999999999998653
Q ss_pred -----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 836 -----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 836 -----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
.++.++++. ......+|.+.+.+.. +...|++|||+|.+ +...++.
T Consensus 78 nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-------------t~~a~na 138 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-------------TKEAFNA 138 (486)
T ss_pred HHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-------------CHHHHHH
Confidence 122222211 1123345666555542 34579999999966 4566788
Q ss_pred HHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCCC
Q 001395 901 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGC 979 (1086)
Q Consensus 901 LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g~ 979 (1086)
|+..|+.. ..++++|++|+.++.+.+++.+ |+. .+.|++++.++....++..++..++.. +..+..|+..+.|
T Consensus 139 LLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G- 212 (486)
T PRK14953 139 LLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG- 212 (486)
T ss_pred HHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99999854 4467777788888889899988 774 789999999999999999888776553 3346778888776
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+.+++.++++.++..+ ...||.+++...+
T Consensus 213 ~lr~al~~Ldkl~~~~------~~~It~~~V~~~l 241 (486)
T PRK14953 213 GMRDAASLLDQASTYG------EGKVTIKVVEEFL 241 (486)
T ss_pred CHHHHHHHHHHHHHhc------CCCcCHHHHHHHh
Confidence 5666667776665332 3356666666544
No 170
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.9e-13 Score=163.07 Aligned_cols=203 Identities=18% Similarity=0.231 Sum_probs=147.8
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------- 835 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------- 835 (1086)
..+.+|+||+|++.+++.|+..+.. -+.+..+|||||+|+|||++|+++|+.+.+
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 3455899999999999999998863 234566999999999999999999998754
Q ss_pred -----------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 836 -----------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 836 -----------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
+++.+++.. ...-..++.+.+.+. .....|++|||+|.| +...++.
T Consensus 78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~na 138 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAFNA 138 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHHHH
Confidence 233333221 012345566554433 345679999999966 4567899
Q ss_pred HHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCC
Q 001395 901 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGC 979 (1086)
Q Consensus 901 LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~ 979 (1086)
|+..|+. +...+++|++|+.++.+.+++.+ |+. .+.|.+++.++..+.++..+++.++. .+..+..|++.+.|
T Consensus 139 LLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 139 LLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999985 45578888898889999999998 875 68899999999999999888766554 34457778888877
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+.+++.+++..++..+ ...|+.+++...+
T Consensus 213 dlR~alslLdklis~~------~~~It~e~V~~ll 241 (563)
T PRK06647 213 SVRDAYTLFDQVVSFS------DSDITLEQIRSKM 241 (563)
T ss_pred CHHHHHHHHHHHHhhc------CCCCCHHHHHHHh
Confidence 6777777777655432 2346666555543
No 171
>PRK04195 replication factor C large subunit; Provisional
Probab=99.51 E-value=4.1e-13 Score=161.53 Aligned_cols=187 Identities=25% Similarity=0.341 Sum_probs=138.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..+++|+|.+.+++.|++++.... -| .+++++|||||||||||++|+++|++++..++.+++++....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~---- 78 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA---- 78 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH----
Confidence 346899999999999999986651 12 347889999999999999999999999999999998875422
Q ss_pred hHHHHHHHHHHhhc------CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCc
Q 001395 488 SEQALHEVFDSASQ------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 561 (1086)
Q Consensus 488 se~~l~~vf~~a~~------~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idp 561 (1086)
..+..+...+.. ..+.||+|||+|.+.... ....+..|+..++. .+..+|+++|.+..+.+
T Consensus 79 --~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 79 --DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIILTANDPYDPSL 145 (482)
T ss_pred --HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEEeccCccccch
Confidence 123333322211 246799999999985421 22344567777663 33457778888887776
Q ss_pred -cccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 562 -ALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 562 -aL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
.+++ |+ ..|.| +.|+..++..+++..+...+..+++..++.|+..+.| |++.+++...
T Consensus 146 k~Lrs--r~-~~I~f--------------~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 146 RELRN--AC-LMIEF--------------KRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred hhHhc--cc-eEEEe--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 5655 43 45666 9999999999999999888888889999999998876 6666555443
No 172
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=4.1e-13 Score=156.40 Aligned_cols=224 Identities=21% Similarity=0.268 Sum_probs=149.0
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHH-Hh---hCCC-CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc-cc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAF-KR---IGTR-PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SK 848 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~-~~---lg~~-~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~-~~ 848 (1086)
+.++||+++++.+..++....+.-... .. -+.. ...++||+||||||||++|+++|..++.+|..+++..+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 347999999999887764221111000 00 0011 135699999999999999999999999999999988865 35
Q ss_pred cccccH-HHHHHHHHHH----HhcCCeEEEEecCchhhhhcCCCCCCCC-ccHHHHHHHHHHHhcccc-----------C
Q 001395 849 WVGESE-KAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGVS-VSDRVMSQLLVELDGLHQ-----------R 911 (1086)
Q Consensus 849 ~vGese-~~ir~lf~~A----~~~~p~ILflDEid~L~~~r~~~~~~~~-~~~~v~~~LL~~Ld~~~~-----------~ 911 (1086)
|+|+.. ..+..++..+ ....++||||||||.+.+.+...+.... ....+++.||+.|++... .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 888753 3444444422 2356789999999999875433221111 224789999999976531 1
Q ss_pred CCEEEEEecCCC---------------------------C-----------------------CCChhhhCCCCcceEee
Q 001395 912 VNVTVIAATNRP---------------------------D-----------------------KIDPALLRPGRFDRLLY 941 (1086)
Q Consensus 912 ~~v~VI~aTN~p---------------------------~-----------------------~lD~aLlrpgRFd~~I~ 941 (1086)
.+.++|.|+|-. + -+.|+++ ||+|.+++
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 246777777751 0 0234444 59999999
Q ss_pred cCCCCHHHHHHHHHHH----Hhc----C---CCC---CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 942 VGPPNETDREEIFRIH----LRK----I---PCS---SDVNIRELACLS--EGCTGADISLICREAAISAIEENL 1000 (1086)
Q Consensus 942 ~~~P~~~eR~~Il~~~----l~~----~---~l~---~d~~l~~La~~t--~g~sgadl~~l~~~A~~~A~~~~~ 1000 (1086)
|.+.+.++..+|+... +++ + ++. .+.-++.|++.. ..+-+|.|+.++++.....+.+..
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 9999999999998763 221 1 221 223367777753 356679999999988887776653
No 173
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.50 E-value=1.3e-12 Score=151.47 Aligned_cols=223 Identities=22% Similarity=0.242 Sum_probs=148.7
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC---------CcEEEEeC
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---------LNFLAVKG 842 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~---------~~fi~v~~ 842 (1086)
..-++++|.++.+++|...+...+. -..+.+++|+||||||||++++++++++. ..++.+++
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~---------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR---------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3446789999999988888763211 13456799999999999999999987642 57888898
Q ss_pred Cccccc----------cc--cc-------c-HHHHHHHHHHHH-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 843 PELFSK----------WV--GE-------S-EKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 843 sel~~~----------~v--Ge-------s-e~~ir~lf~~A~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
....+. .. |. + .+..+.++.... ...+.||+|||+|.+... ...++.+|
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l 152 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQL 152 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhH
Confidence 654221 10 11 1 222344444443 345779999999998621 12344555
Q ss_pred HHHHhcc-ccCCCEEEEEecCCCC---CCChhhhCCCCcc-eEeecCCCCHHHHHHHHHHHHhcC--C-CCCcccHHHHH
Q 001395 902 LVELDGL-HQRVNVTVIAATNRPD---KIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKI--P-CSSDVNIRELA 973 (1086)
Q Consensus 902 L~~Ld~~-~~~~~v~VI~aTN~p~---~lD~aLlrpgRFd-~~I~~~~P~~~eR~~Il~~~l~~~--~-l~~d~~l~~La 973 (1086)
+...+.. ....++.+|++||+++ .+++.+.+ ||. ..++|++++.++..+|++..++.. + ...+..++.++
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 5442111 1235789999999886 47888877 775 689999999999999999988631 1 11222233333
Q ss_pred ---HHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 974 ---CLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 974 ---~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
..+.| ..+.+..+|+.|+..|..+. ...|+.+|+..|+..+.
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~--~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREG--AERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Confidence 34445 45566678888888887664 45799999999987764
No 174
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=7.6e-13 Score=157.25 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=142.0
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+.+|+|++|++.++..|+..+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 346899999999999999988863 234567999999999999999999987643
Q ss_pred -----------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 836 -----------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 836 -----------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
+++.+++... . .-..++.+.+.+. .....|+||||+|.+ ....++.
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-------------t~~~~n~ 140 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHML-------------TKEAFNS 140 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-------------CHHHHHH
Confidence 3444443221 1 1233444333332 245679999999976 3456889
Q ss_pred HHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCC
Q 001395 901 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGC 979 (1086)
Q Consensus 901 LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~ 979 (1086)
|++.|+.. ..++++|++|+.+..|.+++.+ |+ .++.|+.++.++....++..+++.+.. .+..+..|+..+.|
T Consensus 141 LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99999864 4578888888888999999998 77 478999999999999998888766654 34457788888877
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+.+++.+.++..+.. . ...|+.+++.+++
T Consensus 215 dlr~a~~~Lekl~~~---~---~~~It~~~V~~l~ 243 (451)
T PRK06305 215 SLRDAESLYDYVVGL---F---PKSLDPDSVAKAL 243 (451)
T ss_pred CHHHHHHHHHHHHHh---c---cCCcCHHHHHHHH
Confidence 444444444443322 1 1336666655444
No 175
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=6.2e-13 Score=152.88 Aligned_cols=239 Identities=25% Similarity=0.315 Sum_probs=159.0
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhh-CCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc-cccc-
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG- 851 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~l-g~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~-~~vG- 851 (1086)
+.|+||+++|+.+..++............+ .-..|+++||+||||||||++|+++|+.++.+|+.+++.++.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 458999999999987776322221111111 1234688999999999999999999999999999999998873 7888
Q ss_pred ccHHHHHHHHHHH-------------------------------------------------------------------
Q 001395 852 ESEKAVRSLFAKA------------------------------------------------------------------- 864 (1086)
Q Consensus 852 ese~~ir~lf~~A------------------------------------------------------------------- 864 (1086)
+.+..++.+|..|
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 4566666666555
Q ss_pred ------------------------------------------------------------------------HhcCCeEE
Q 001395 865 ------------------------------------------------------------------------RANAPSII 872 (1086)
Q Consensus 865 ------------------------------------------------------------------------~~~~p~IL 872 (1086)
+...-.||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 01234699
Q ss_pred EEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------cCCCEEEEEec----CCCCCCChhhhCCCCcceEe
Q 001395 873 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRFDRLL 940 (1086)
Q Consensus 873 flDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------~~~~v~VI~aT----N~p~~lD~aLlrpgRFd~~I 940 (1086)
||||||.|+...... ..+-....+|..||..|+|-. ...++++|++. ..|..+-|.|. |||..++
T Consensus 252 fiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 252 FIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 999999998765221 112234568999999998742 35678888875 34556667776 6999999
Q ss_pred ecCCCCHHHHHHHHH--------HHH---hcCCCC---CcccHHHHHHHc-------CCCcHHHHHHHHHHHHHHHHHHh
Q 001395 941 YVGPPNETDREEIFR--------IHL---RKIPCS---SDVNIRELACLS-------EGCTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 941 ~~~~P~~~eR~~Il~--------~~l---~~~~l~---~d~~l~~La~~t-------~g~sgadl~~l~~~A~~~A~~~~ 999 (1086)
.+..++.++..+||. .+. +..++. .+..+.++|+.+ ++.-+|-|+.++......+.-+.
T Consensus 329 ~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 329 ELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred ECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC
Confidence 999999999998872 222 111211 233366666554 34445777777777666655443
Q ss_pred cCC----CCCCHHHHHHHHHh
Q 001395 1000 LDA----SRITMQHLKTAIRH 1016 (1086)
Q Consensus 1000 ~~~----~~It~~d~~~al~~ 1016 (1086)
-+. -.|+...+.+.+..
T Consensus 409 p~~~~~~v~I~~~~V~~~l~~ 429 (441)
T TIGR00390 409 PDLSGQNITIDADYVSKKLGA 429 (441)
T ss_pred CCCCCCEEEECHHHHHhHHHH
Confidence 221 23555555444443
No 176
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5e-13 Score=155.11 Aligned_cols=185 Identities=20% Similarity=0.270 Sum_probs=135.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++..++.++..+... +.+..+||+|||||||||+|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 46789999999999998887554 234568999999999999999999988642
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.+++.+- ..-..++.+.+.+.. ....|+||||+|.+. ....+.|+..|+
T Consensus 82 ~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk~lE 144 (363)
T PRK14961 82 IEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLKTLE 144 (363)
T ss_pred HhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHHHHh
Confidence 223332110 112335555554332 234699999999882 344567888887
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+.+|++|+.++.+.+++++ |+ ..+++ ++|+.++..++++..++..+..+++..++.
T Consensus 145 e~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~--------------~~l~~~el~~~L~~~~~~~g~~i~~~al~~ 205 (363)
T PRK14961 145 EP--PQHIKFILATTDVEKIPKTILS--RC-LQFKL--------------KIISEEKIFNFLKYILIKESIDTDEYALKL 205 (363)
T ss_pred cC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeC--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 63 4567788888888889888887 76 35566 999999999999998888777788889999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
++..+.| +.+++.+++..+.
T Consensus 206 ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 206 IAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9998877 6677666666553
No 177
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.50 E-value=4.1e-12 Score=156.32 Aligned_cols=218 Identities=24% Similarity=0.323 Sum_probs=143.4
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEE
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 838 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi 838 (1086)
..+.+|++++|++...+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 3466899999999998887665532 235569999999999999999998654 46799
Q ss_pred EEeCCccc-------cccccccHH----HHHHHHHH----------HHhcCCeEEEEecCchhhhhcCCCCCCCCccHHH
Q 001395 839 AVKGPELF-------SKWVGESEK----AVRSLFAK----------ARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 897 (1086)
Q Consensus 839 ~v~~sel~-------~~~vGese~----~ir~lf~~----------A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v 897 (1086)
.+++..+- ..+.|.... ..+..++. .......+|||||++.| +...
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-------------d~~~ 281 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-------------DPLL 281 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-------------CHHH
Confidence 99987651 111221111 01111110 11223469999999965 5677
Q ss_pred HHHHHHHHhccc--------------------------cCCCEEEEEec-CCCCCCChhhhCCCCcceEeecCCCCHHHH
Q 001395 898 MSQLLVELDGLH--------------------------QRVNVTVIAAT-NRPDKIDPALLRPGRFDRLLYVGPPNETDR 950 (1086)
Q Consensus 898 ~~~LL~~Ld~~~--------------------------~~~~v~VI~aT-N~p~~lD~aLlrpgRFd~~I~~~~P~~~eR 950 (1086)
+..|+..|+... ...++++|++| +.++.++++|.+ ||. .++|++++.+++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 888888886421 11235666554 567889999988 986 568899999999
Q ss_pred HHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHhh
Q 001395 951 EEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL------DASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 951 ~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~------~~~~It~~d~~~al~~~ 1017 (1086)
..|++..+++.... .+.-++.|++.+ +.|+..-+++..+...+..+.. ....|+.+|+++++..-
T Consensus 359 ~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 99999998876543 233345555544 3566665666666544433321 12368999999998654
No 178
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.4e-13 Score=162.02 Aligned_cols=185 Identities=19% Similarity=0.259 Sum_probs=138.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+.++... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 46789999999999999988654 224468999999999999999999988652
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++++++.+- . .-..++++.+.+. .+...|+||||+|.+. ....+.|+..|+
T Consensus 82 i~~g~~~d~~eidaas~--~----~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk~LE 144 (509)
T PRK14958 82 IDEGRFPDLFEVDAASR--T----KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLKTLE 144 (509)
T ss_pred HhcCCCceEEEEccccc--C----CHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHHHHh
Confidence 555554321 1 1122455554432 2345699999999983 345678888888
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+.+|++|+.+..+.+.+++ |+ ..+++ ..++.++....++..+.+.+..+++..++.
T Consensus 145 ep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f--------------~~l~~~~i~~~l~~il~~egi~~~~~al~~ 205 (509)
T PRK14958 145 EP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHL--------------AQLPPLQIAAHCQHLLKEENVEFENAALDL 205 (509)
T ss_pred cc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhc--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 74 4568888888888888888877 65 24444 888899988888888888888888889999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
+++.+.| +.+++.+++..+.
T Consensus 206 ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHHH
Confidence 9998876 7778888877664
No 179
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.4e-13 Score=159.47 Aligned_cols=187 Identities=19% Similarity=0.296 Sum_probs=141.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++++|++..++.|+..+... +.+..+||+|||||||||+|+++|+.+++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~ 86 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT 86 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh
Confidence 46789999999999988876544 235679999999999999999999988652
Q ss_pred ------------EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHH
Q 001395 472 ------------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLL 535 (1086)
Q Consensus 472 ------------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll 535 (1086)
++++++.+ ......++.+++.+.. ....|+||||+|.+. ....+.|+
T Consensus 87 ~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~naLL 149 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFNALL 149 (507)
T ss_pred HHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHHHHH
Confidence 22222211 0123446666666542 234699999999883 34567788
Q ss_pred HHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchH
Q 001395 536 NLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDS 615 (1086)
Q Consensus 536 ~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~ 615 (1086)
..|+. ....+++|++|+.++.+.+++++ |+ ..+++ ..++.++...+++..+...+..+++.
T Consensus 150 k~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef--------------~~ls~~el~~~L~~i~~~egi~ie~e 210 (507)
T PRK06645 150 KTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDL--------------RRLSFEEIFKLLEYITKQENLKTDIE 210 (507)
T ss_pred HHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEc--------------cCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 88875 34578888888888899999887 66 35666 88999999999999999888888889
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 616 EVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 616 ~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
.++.++..++| +.+++.++++.+...
T Consensus 211 AL~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 211 ALRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 99999998887 778887777776543
No 180
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.1e-12 Score=153.78 Aligned_cols=225 Identities=18% Similarity=0.216 Sum_probs=151.5
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCcccc
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFS 847 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~ 847 (1086)
.-+.+.|.++..++|...+.... .-..+.+++|+||||||||++++.+++++ +..++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~---------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL---------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 33567888888888877775321 11344569999999999999999998875 57889999865321
Q ss_pred ----------cccc-------cc-HHHHHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcc
Q 001395 848 ----------KWVG-------ES-EKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL 908 (1086)
Q Consensus 848 ----------~~vG-------es-e~~ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~ 908 (1086)
...+ .. ......+.+.... ..+.||+|||+|.+.... ....+..|+..++..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~~ 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEEY 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhcc
Confidence 1111 11 2223333333332 456799999999886211 234566677666544
Q ss_pred ccCCCEEEEEecCCCC---CCChhhhCCCCcc-eEeecCCCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHcCCC--
Q 001395 909 HQRVNVTVIAATNRPD---KIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKI---PCSSDVNIRELACLSEGC-- 979 (1086)
Q Consensus 909 ~~~~~v~VI~aTN~p~---~lD~aLlrpgRFd-~~I~~~~P~~~eR~~Il~~~l~~~---~l~~d~~l~~La~~t~g~-- 979 (1086)
. ..++.+|+++|..+ .+++.+.+ ||. ..|+|++++.++..+|++.+++.- ....+..++.+++.+.+.
T Consensus 170 ~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 170 P-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred C-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 2 23788999998764 46777766 663 578999999999999999888642 112334466777777432
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
..+.+-.+|+.|+..|..+. ...|+.+|+..|+..+.+.
T Consensus 247 d~r~a~~ll~~a~~~a~~~~--~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 247 DARVAIDLLRRAGLIAEREG--SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHHHH
Confidence 34556688888888887664 4579999999999887443
No 181
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.49 E-value=3.1e-13 Score=163.70 Aligned_cols=194 Identities=23% Similarity=0.318 Sum_probs=137.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..|++|+|.++.++.++..+.. ..+.++||+||||||||++|+++++.. +.+|+.++|
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~ 129 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDA 129 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcc
Confidence 5678999999999888865422 235689999999999999999998642 357899998
Q ss_pred cccc--c-----ccchhhH----------------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHH
Q 001395 478 PEVV--S-----QNYGESE----------------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL 534 (1086)
Q Consensus 478 s~l~--s-----~~~Gese----------------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~L 534 (1086)
.... . ..+|... +.-...+..+ ...+|||||+|.+. ...+..|
T Consensus 130 ~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~-----------~~~q~~L 195 (531)
T TIGR02902 130 TTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELH-----------PVQMNKL 195 (531)
T ss_pred ccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCC-----------HHHHHHH
Confidence 6421 1 0011000 0000112222 23599999999883 4556777
Q ss_pred HHHhhccc---------c-----------------CCC-eeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccC
Q 001395 535 LNLMDGVC---------R-----------------TDG-VLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNS 587 (1086)
Q Consensus 535 l~lLd~l~---------~-----------------~~~-viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v 587 (1086)
+..|+.-. . ..+ .++++||+.++.++|++++ |+. ++.+
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f------------ 260 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFF------------ 260 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeC------------
Confidence 77765310 0 112 3445566789999999998 774 5556
Q ss_pred CCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 588 PAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 588 ~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
++++.+++.+|++..+++.+..+++..++.++..+. +++++.++++.|+..|..+
T Consensus 261 --~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~ 315 (531)
T TIGR02902 261 --RPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE 315 (531)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC
Confidence 888999999999999998888888888988887664 7899999999998877654
No 182
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.49 E-value=4.7e-13 Score=158.33 Aligned_cols=196 Identities=22% Similarity=0.252 Sum_probs=152.2
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcE-------EE--
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF-------LA-- 839 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f-------i~-- 839 (1086)
..+.+|+|++|++.+...|..++.. -+...+.||.||.|||||++||.+|+.+++.- ..
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 4455899999999999999999874 34567799999999999999999998865431 11
Q ss_pred ----EeC---Cccc--cccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHh
Q 001395 840 ----VKG---PELF--SKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 906 (1086)
Q Consensus 840 ----v~~---sel~--~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld 906 (1086)
++. .|++ +.-...+-..+|++.+.+.- ....|.+|||+|.| +....|.||+.|+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLKTLE 144 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLKTLE 144 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhcccc
Confidence 110 1110 00111234567888887753 44679999999976 6788999999998
Q ss_pred ccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCccc-HHHHHHHcCCCcHHHHH
Q 001395 907 GLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADIS 985 (1086)
Q Consensus 907 ~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~-l~~La~~t~g~sgadl~ 985 (1086)
++..+|.+|+||..++.+.+.+++ |+ +.+.|..-+.++....|...+.+.++..+.+ +..+|+..+| +.||..
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 456799999999999999999999 87 4677999999999999999998887775444 7788888887 889999
Q ss_pred HHHHHHHHHH
Q 001395 986 LICREAAISA 995 (1086)
Q Consensus 986 ~l~~~A~~~A 995 (1086)
.++..|....
T Consensus 219 slLDq~i~~~ 228 (515)
T COG2812 219 SLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHcc
Confidence 9998887654
No 183
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.48 E-value=1.2e-12 Score=148.91 Aligned_cols=187 Identities=18% Similarity=0.222 Sum_probs=126.8
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
.+.++++++|++++++.++.++.. ...+..+||+||||+|||++|++++++.+.+++.+++.+ .+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 345789999999999999988762 224455777999999999999999999999999999876 22
Q ss_pred ccccHHHHHHHHHHHH-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCCh
Q 001395 850 VGESEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 928 (1086)
Q Consensus 850 vGese~~ir~lf~~A~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~ 928 (1086)
+......+........ ...+.||||||+|.+. ....+..|...|+.. ..++.+|++||.+..+++
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG------------LADAQRHLRSFMEAY--SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc------------CHHHHHHHHHHHHhc--CCCceEEEEcCChhhchH
Confidence 1111111222111111 1357899999999762 123445555556643 346789999999999999
Q ss_pred hhhCCCCcceEeecCCCCHHHHHHHHHHHHhc-------CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 929 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCS-SDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 929 aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~-------~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
++.+ ||. .+.|+.|+.+++..+++.+++. .+.. .+..+..+++...| |++.+++...
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHH
Confidence 9998 885 7889999999998887654332 1221 12234666665554 5555554433
No 184
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.5e-12 Score=158.57 Aligned_cols=208 Identities=19% Similarity=0.185 Sum_probs=149.9
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEe-C-------
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK-G------- 842 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~-~------- 842 (1086)
+.+|++++|++.+++.|..++.. -+.+.++||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 45899999999999999998863 245677999999999999999999998765322111 0
Q ss_pred -------------Ccccccc--ccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHH
Q 001395 843 -------------PELFSKW--VGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 903 (1086)
Q Consensus 843 -------------sel~~~~--vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~ 903 (1086)
++++... ..-.-..+|+++..+.. ....|+||||+|.| ....++.|++
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-------------s~~a~naLLK 154 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-------------STAAFNALLK 154 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-------------CHHHHHHHHH
Confidence 1111000 00124467778776653 23579999999966 4567899999
Q ss_pred HHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcCCCcHH
Q 001395 904 ELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGA 982 (1086)
Q Consensus 904 ~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~t~g~sga 982 (1086)
.|+.. ..++.+|++|+.++.+.+.+++ |+ ..+.|+.++.++....++..+++.+...+ ..++.|+..+.| +.+
T Consensus 155 tLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 99854 4578888888888888888888 77 57899999999999999988877665533 456777888877 667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 983 DISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 983 dl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
++.+.+++++... ...|+.+++...+.
T Consensus 229 ~al~~Ldkli~~g------~g~It~e~V~~llg 255 (598)
T PRK09111 229 DGLSLLDQAIAHG------AGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHHhhc------CCCcCHHHHHHHhC
Confidence 7777776654332 23577777765553
No 185
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.48 E-value=3e-13 Score=169.29 Aligned_cols=260 Identities=17% Similarity=0.252 Sum_probs=166.0
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 847 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~ 847 (1086)
+..|++++|.+...+.+.+.+... ......|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 356889999999999988887742 2334579999999999999999997754 67999999976522
Q ss_pred c-----cccc----cHH---HHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc------
Q 001395 848 K-----WVGE----SEK---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 909 (1086)
Q Consensus 848 ~-----~vGe----se~---~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~------ 909 (1086)
. ..|. ... .....|..| ..++||||||+.+ ...++.+|+..|+...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-------------~~~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-------------PLELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-------------CHHHHHHHHHHHHhCCEEeCCC
Confidence 1 1121 111 111233333 3469999999965 6788999999986432
Q ss_pred ---cCCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhc----CCCCC-ccc--
Q 001395 910 ---QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRK----IPCSS-DVN-- 968 (1086)
Q Consensus 910 ---~~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~----~~l~~-d~~-- 968 (1086)
...++.||++|+..-. .+...|+|.. .+.+..|...+|.+ +++.++++ ++... .+.
T Consensus 505 ~~~~~~~~RiI~~t~~~l~---~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLK---KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCcccceEEEEEeCCCCHH---HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1247899999987632 2333344432 45677888888866 44555433 22211 122
Q ss_pred -HHHHHHHcCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh--hCCCchhHHHHHHHHHHHHHhcccccc
Q 001395 969 -IRELACLSEGCT--GADISLICREAAISAIEENLDASRITMQHLKTAIRH--VQPSEIHSYKELSAKFQRLVHSNAEAD 1043 (1086)
Q Consensus 969 -l~~La~~t~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1086)
+..|... .|. .++|++++++|+..+- ...|+.+ +...... ..+...... ...+.+++.++..+...
T Consensus 582 al~~L~~y--~WPGNvrEL~~~i~~a~~~~~-----~~~i~~~-l~~~~~~~~~~~~~~~~~-~~~~~~Er~~I~~aL~~ 652 (686)
T PRK15429 582 TLRTLSNM--EWPGNVRELENVIERAVLLTR-----GNVLQLS-LPDITLPEPETPPAATVV-AQEGEDEYQLIVRVLKE 652 (686)
T ss_pred HHHHHHhC--CCCCcHHHHHHHHHHHHHhCC-----CCccccc-Cchhhccccccccccccc-ccHHHHHHHHHHHHHHH
Confidence 3333322 344 5999999999987652 2233321 1111100 000000000 11256888899999999
Q ss_pred cccccc---ccccccchh---HHHHHhhceEe
Q 001395 1044 ESGYQL---RPSKSIGSN---MWTLIKSISLF 1069 (1086)
Q Consensus 1044 ~~~~~~---~~~~~~g~~---L~~~~k~~~~~ 1069 (1086)
+.|+.. ++++.+|+. ||++||++|+.
T Consensus 653 ~~gn~~~~~~aA~~LGi~R~tL~rklk~~gi~ 684 (686)
T PRK15429 653 TNGVVAGPKGAAQRLGLKRTTLLSRMKRLGID 684 (686)
T ss_pred cCCCcccHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 999987 899999998 99999999984
No 186
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.3e-13 Score=154.63 Aligned_cols=207 Identities=16% Similarity=0.173 Sum_probs=143.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|++|+|++.+++.|+.++.. -+.+..+||+||||||||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 445899999999999999888763 2456679999999999999999999987552
Q ss_pred -------------------EEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCc
Q 001395 837 -------------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSV 893 (1086)
Q Consensus 837 -------------------fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~ 893 (1086)
++.+++.+. .....++.+.+.+. .....|+||||+|.+
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l------------- 139 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML------------- 139 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-------------
Confidence 222222110 11345666655552 123469999999966
Q ss_pred cHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHH
Q 001395 894 SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIREL 972 (1086)
Q Consensus 894 ~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~L 972 (1086)
+...++.|+..|+.. ....++|++|+++..+-+++.+ |+. ++.|.+++.++....++..+++.+.. .+..++.|
T Consensus 140 ~~~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 140 SIAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred CHHHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345678889888843 3466777777778888888887 764 78899999999988888888766543 34457788
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 973 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 973 a~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+..+.| +.+.+.+.++.+...+-. .-+...|+.+++.+.+
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~~~~-~~~~~~It~~~v~~~v 254 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAFSVE-SEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhccc-cCCCCccCHHHHHHHH
Confidence 888877 555666666655444311 0123467776665544
No 187
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.47 E-value=2.4e-13 Score=164.66 Aligned_cols=264 Identities=18% Similarity=0.221 Sum_probs=167.5
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 846 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~ 846 (1086)
....|++++|.+...+++.+.+... ......++|+|++||||+++|+++.... +.+|+.++|..+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4578999999999888777766531 1234559999999999999999986553 5799999998753
Q ss_pred ccc-----ccccH-------HHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-----
Q 001395 847 SKW-----VGESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----- 909 (1086)
Q Consensus 847 ~~~-----vGese-------~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~----- 909 (1086)
... .|... .....+|+.|. .++||||||+.| +..++..|+..++...
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-------------SPRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-------------CHHHHHHHHHHHhcCCcccCC
Confidence 211 11100 01112344433 459999999965 6778889999886431
Q ss_pred ----cCCCEEEEEecCCCCC-------CChhhhCCCCcceEeecCCCCHHHHHH----HHHHHHh----cCCCC-CcccH
Q 001395 910 ----QRVNVTVIAATNRPDK-------IDPALLRPGRFDRLLYVGPPNETDREE----IFRIHLR----KIPCS-SDVNI 969 (1086)
Q Consensus 910 ----~~~~v~VI~aTN~p~~-------lD~aLlrpgRFd~~I~~~~P~~~eR~~----Il~~~l~----~~~l~-~d~~l 969 (1086)
...++.||++|+.+-. +.+.|.. |+. .+.+..|...+|.+ +++.+++ +.+.. ..+.-
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1246899999987632 2233333 432 46677788888764 3334433 33321 12333
Q ss_pred HHHHHHcC-CCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH--HHHHhh-CC--CchhHHHHHHHHHHHHHhcccc
Q 001395 970 RELACLSE-GCT--GADISLICREAAISAIEENLDASRITMQHLK--TAIRHV-QP--SEIHSYKELSAKFQRLVHSNAE 1041 (1086)
Q Consensus 970 ~~La~~t~-g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~--~al~~~-~p--~~~~~~~~~~~~~~~~~~~~~~ 1041 (1086)
+.+..... .|+ .++|++++.+|+..+ +...|+.+|+. ...... .+ .....+++..+.+++.++..+.
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~~-----~~~~i~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~~E~~~i~~~l 483 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQL-----EGYELRPQDILLPDYDAAVAVGEDAMEGSLDEITSRFERSVLTRLY 483 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC-----CCCcccHHHcCCcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 33333222 344 589999998887754 34567777752 111100 00 0112456667788998888776
Q ss_pred ccccccccccccccchh---HHHHHhhceEe
Q 001395 1042 ADESGYQLRPSKSIGSN---MWTLIKSISLF 1069 (1086)
Q Consensus 1042 ~~~~~~~~~~~~~~g~~---L~~~~k~~~~~ 1069 (1086)
.... +....++.+|++ ||+|||++|+.
T Consensus 484 ~~~~-~~~~aA~~LGisr~tL~rkl~~~gi~ 513 (520)
T PRK10820 484 RNYP-STRKLAKRLGVSHTAIANKLREYGLS 513 (520)
T ss_pred HHCC-CHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 6554 667899999998 99999999985
No 188
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=7.3e-13 Score=151.25 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=129.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-----~~~i~I~~s~l~s 482 (1086)
..+++++|.+++++.|+.++... ...++|||||||||||++|+++|+++. ..++.++.++..+
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~ 77 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG 77 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc
Confidence 45689999999999988876543 123699999999999999999999872 2467777765432
Q ss_pred ccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCC
Q 001395 483 QNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~ 558 (1086)
. ......++. |.... .....|++|||+|.+. ......|+..|+... ..+.+|.+||....
T Consensus 78 ~--~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~--~~t~~il~~n~~~~ 141 (319)
T PLN03025 78 I--DVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYS--NTTRFALACNTSSK 141 (319)
T ss_pred H--HHHHHHHHH-HHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhccc--CCceEEEEeCCccc
Confidence 1 111222222 21111 1345799999999983 234566777776542 34567788888888
Q ss_pred CCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHH
Q 001395 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 637 (1086)
Q Consensus 559 idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~ 637 (1086)
+.+++++ |+. .+.+ +.|+.++...+++..+++.+..+++..++.++....| |++.++.
T Consensus 142 i~~~L~S--Rc~-~i~f--------------~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln 199 (319)
T PLN03025 142 IIEPIQS--RCA-IVRF--------------SRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALN 199 (319)
T ss_pred cchhHHH--hhh-cccC--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 8888988 652 4555 8999999999999999888888889999999988776 4444443
No 189
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=6.9e-13 Score=152.58 Aligned_cols=221 Identities=24% Similarity=0.343 Sum_probs=151.0
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCC-CCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc-cccc-
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGT-RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG- 851 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~-~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~-~~vG- 851 (1086)
..|+|++++|+.+..++............... ..+.++||+||||||||++|++||..++.+|+.+++.++.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 44899999999998877532111111111110 12578999999999999999999999999999999998874 6888
Q ss_pred ccHHHHHHHHHHHH------------------------------------------------------------------
Q 001395 852 ESEKAVRSLFAKAR------------------------------------------------------------------ 865 (1086)
Q Consensus 852 ese~~ir~lf~~A~------------------------------------------------------------------ 865 (1086)
..+..++.+|..|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 44566666666651
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 001395 866 ------------------------------------------------------------------------ANAPSIIF 873 (1086)
Q Consensus 866 ------------------------------------------------------------------------~~~p~ILf 873 (1086)
...-+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01345999
Q ss_pred EecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcc--------ccCCCEEEEEec----CCCCCCChhhhCCCCcceEee
Q 001395 874 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--------HQRVNVTVIAAT----NRPDKIDPALLRPGRFDRLLY 941 (1086)
Q Consensus 874 lDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~--------~~~~~v~VI~aT----N~p~~lD~aLlrpgRFd~~I~ 941 (1086)
|||||.|+...+.. ..+-....+|..||..|+|- ....++++||+- ..|..+-|.|. |||..++.
T Consensus 255 iDEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 255 IDEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EEcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 99999998765331 22223456899999999874 245688888864 35666778887 59999999
Q ss_pred cCCCCHHHHHHHHHH----HHhc----C---CCC---CcccHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHH
Q 001395 942 VGPPNETDREEIFRI----HLRK----I---PCS---SDVNIRELACLSE-------GCTGADISLICREAAISAIEE 998 (1086)
Q Consensus 942 ~~~P~~~eR~~Il~~----~l~~----~---~l~---~d~~l~~La~~t~-------g~sgadl~~l~~~A~~~A~~~ 998 (1086)
+..++.++..+||.. .++. + ++. .+..++++|+.+. +.-+|-|+.++.+......-+
T Consensus 332 L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe 409 (443)
T PRK05201 332 LDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFE 409 (443)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhcc
Confidence 999999999988831 2221 1 221 2333666665543 333567777777666655443
No 190
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.2e-12 Score=150.06 Aligned_cols=209 Identities=22% Similarity=0.252 Sum_probs=143.5
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc---
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL--- 845 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel--- 845 (1086)
..+.+|++++|++.+++.+...+.. -+.+.++|||||||+|||++|+++|+....+.....+.++
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3456899999999999999988863 2346679999999999999999999987542111100000
Q ss_pred ---ccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEE
Q 001395 846 ---FSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 918 (1086)
Q Consensus 846 ---~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~ 918 (1086)
...........++.++..+.. ..+.||||||+|.+ ....++.|+..|+.. ....++|+
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-------------~~~~~~~ll~~le~~--~~~~~~Il 143 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-------------SSAAFNAFLKTLEEP--PAHAIFIL 143 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-------------CHHHHHHHHHHHhCC--CCceEEEE
Confidence 001111224567777776543 33569999999965 345678888888753 34567777
Q ss_pred ecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 919 ATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 919 aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~ 997 (1086)
+|+.+..+.+++.+ |+ .++.|++|+.++...++...+.+.++. .+..+..|+..+.| +.+.+.+.++.....+
T Consensus 144 ~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~-- 217 (367)
T PRK14970 144 ATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC-- 217 (367)
T ss_pred EeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc--
Confidence 78888899999988 76 478999999999999998888776653 44567778887776 5566666666555432
Q ss_pred HhcCCCCCCHHHHHHHH
Q 001395 998 ENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 998 ~~~~~~~It~~d~~~al 1014 (1086)
...|+.++++..+
T Consensus 218 ----~~~it~~~v~~~~ 230 (367)
T PRK14970 218 ----GKNITRQAVTENL 230 (367)
T ss_pred ----CCCCCHHHHHHHh
Confidence 1125655555444
No 191
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=8.2e-13 Score=160.26 Aligned_cols=186 Identities=20% Similarity=0.296 Sum_probs=139.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+..+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 46789999999999999988654 235679999999999999999999987542
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.++..+ +..-..++.+++.+. .....||||||+|.+. ....+.|+..|+
T Consensus 82 i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLKtLE 144 (709)
T PRK08691 82 IDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLKTLE 144 (709)
T ss_pred HhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHHHHH
Confidence 22333211 111234666665432 2345699999999872 345677888888
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+.+|++|+.+..+.+.+++ |+ ..+.| +.++.++....|+..+.+.+..+++..+..
T Consensus 145 EP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f--------------~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~ 205 (709)
T PRK08691 145 EP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVL--------------RNMTAQQVADHLAHVLDSEKIAYEPPALQL 205 (709)
T ss_pred hC--CCCcEEEEEeCCccccchHHHH--HH-hhhhc--------------CCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 63 4568888899999999888876 65 23333 889999999999999998888888999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
|++.+.| +.+++.++++.+..
T Consensus 206 Ia~~A~G-slRdAlnLLDqaia 226 (709)
T PRK08691 206 LGRAAAG-SMRDALSLLDQAIA 226 (709)
T ss_pred HHHHhCC-CHHHHHHHHHHHHH
Confidence 9998865 67888888876654
No 192
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.4e-12 Score=157.13 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=143.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|++++|++.+++.|+.++.. -+.+.++||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 345899999999999999888763 2456779999999999999999999987652
Q ss_pred -------------------EEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCc
Q 001395 837 -------------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSV 893 (1086)
Q Consensus 837 -------------------fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~ 893 (1086)
|+.+++.. ......++.+.+.+. .+...|++|||+|.|
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L------------- 139 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML------------- 139 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-------------
Confidence 11121111 012345666666552 234569999999966
Q ss_pred cHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHH
Q 001395 894 SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIREL 972 (1086)
Q Consensus 894 ~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~L 972 (1086)
+...++.|+..|+.. ...+++|++|+.++.|-+.+.+ |+ .++.|..++.++....++..+++.+.. .+..++.|
T Consensus 140 t~~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~L 214 (620)
T PRK14954 140 STAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLI 214 (620)
T ss_pred CHHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455688999999854 3467777777788888889988 76 589999999999888888877766543 44557888
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 973 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 973 a~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+..+.| +.+++.+.++....++.. .-+...|+.+++.+.+
T Consensus 215 a~~s~G-dlr~al~eLeKL~~y~~~-~~~~~~It~~~V~~lv 254 (620)
T PRK14954 215 ARKAQG-SMRDAQSILDQVIAFSVG-SEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhccc-cccCCccCHHHHHHHH
Confidence 888887 555555555554443310 0113346655554443
No 193
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.46 E-value=1.1e-12 Score=154.89 Aligned_cols=181 Identities=24% Similarity=0.342 Sum_probs=129.8
Q ss_pred ccccccCCcHHHHHH---HHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 408 QDISKLGGLSKEYAI---LKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~---l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
..+++++|.+..++. |+.++... ...+++|+||||||||++|+++|+.++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~---- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS---- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc----
Confidence 346789999998776 77766433 23479999999999999999999999999999987532
Q ss_pred chhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC--CCCC
Q 001395 485 YGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN--RPDS 558 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN--~~d~ 558 (1086)
....++.+++.+. .....||||||+|.+. ......|+..++. +.+++|++|+ ....
T Consensus 73 ---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~att~n~~~~ 134 (413)
T PRK13342 73 ---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGATTENPSFE 134 (413)
T ss_pred ---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeCCCChhhh
Confidence 1233455555442 3356799999999883 2334566666653 5677777653 3457
Q ss_pred CCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC--cc-ccchHHHHHHHHHcCCCcHHHHHHH
Q 001395 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM--EH-SLLDSEVEYLSMATHGFVGADLAAL 635 (1086)
Q Consensus 559 idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~--~~-~l~d~~l~~La~~t~GfsgaDL~~L 635 (1086)
+++++++ |+ ..+.+ ++++.++...+++..+... +. .+++..++.+++.+.| ..+.+.++
T Consensus 135 l~~aL~S--R~-~~~~~--------------~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~ 196 (413)
T PRK13342 135 VNPALLS--RA-QVFEL--------------KPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNL 196 (413)
T ss_pred ccHHHhc--cc-eeeEe--------------CCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 8899988 77 56666 8899999999999877542 22 5678888899988855 45555555
Q ss_pred HHHHH
Q 001395 636 CNEAA 640 (1086)
Q Consensus 636 ~~eA~ 640 (1086)
+..+.
T Consensus 197 Le~~~ 201 (413)
T PRK13342 197 LELAA 201 (413)
T ss_pred HHHHH
Confidence 55443
No 194
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1e-12 Score=153.12 Aligned_cols=187 Identities=19% Similarity=0.274 Sum_probs=131.0
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----------------
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------- 471 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~----------------- 471 (1086)
.|++|+|++.+++.|++++..... .+..++...+..+||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 357999999999999999987621 1223455567889999999999999999999977442
Q ss_pred ------EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc
Q 001395 472 ------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 541 (1086)
Q Consensus 472 ------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l 541 (1086)
+..+.... ..+ .-..++.+++.+.. ....|+||||+|.+. ....+.|+..|+..
T Consensus 81 ~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LEep 144 (394)
T PRK07940 81 AGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVEEP 144 (394)
T ss_pred cCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhhcC
Confidence 11221110 111 12236666665532 345699999999983 33457788888864
Q ss_pred ccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHH
Q 001395 542 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621 (1086)
Q Consensus 542 ~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La 621 (1086)
.+++++|.+|+.++.+.|++++ |+ ..+.| +.|+.++..++|... .+ .++.....++
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f--------------~~~~~~~i~~~L~~~---~~--~~~~~a~~la 200 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRS--RC-RHVAL--------------RTPSVEAVAEVLVRR---DG--VDPETARRAA 200 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHh--hC-eEEEC--------------CCCCHHHHHHHHHHh---cC--CCHHHHHHHH
Confidence 3456666667678999999998 77 46666 899999887777632 12 3566678889
Q ss_pred HHcCCCcHHHHHHHHH
Q 001395 622 MATHGFVGADLAALCN 637 (1086)
Q Consensus 622 ~~t~GfsgaDL~~L~~ 637 (1086)
..++|..+..+.-+..
T Consensus 201 ~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 201 RASQGHIGRARRLATD 216 (394)
T ss_pred HHcCCCHHHHHHHhcC
Confidence 9999988877665544
No 195
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=2.3e-12 Score=150.93 Aligned_cols=235 Identities=19% Similarity=0.266 Sum_probs=152.9
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHhhhc----CC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc-ccc
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTLSSL----GL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNY 485 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~~~l----gi-~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s-~~~ 485 (1086)
.|+|++.+++.|...+... ++...... .+ .+..++||+||||||||++|+++|+.++.+|+.+++..+.. .|+
T Consensus 72 ~ViGq~~ak~~l~~av~~~-~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNH-YKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYV 150 (412)
T ss_pred HeeChHHHHHHHHHHHHHH-HHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcc
Confidence 4899999999998777544 22221111 11 24678999999999999999999999999999999988763 577
Q ss_pred hhh-HHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCC--ch-hHHHHHHHHHHHhhccc-----------cCCC
Q 001395 486 GES-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG--EE-LSQRMVATLLNLMDGVC-----------RTDG 546 (1086)
Q Consensus 486 Ges-e~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~--~~-~~~rv~~~Ll~lLd~l~-----------~~~~ 546 (1086)
|+. +..+..+++.+ ....++||||||||.+.+++...+ .+ ....++..|+.+|++-. ...+
T Consensus 151 G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 151 GEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred cchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 864 34445555432 234568999999999987633221 11 12357889999998531 0123
Q ss_pred eeEEeccCCCCC-------CCccccC-----CCCcc----------------eee--------ehhhhhhhhhcccCCCC
Q 001395 547 VLVIAATNRPDS-------IEPALRR-----PGRLD----------------REI--------EIDMSFLFSLLKNSPAA 590 (1086)
Q Consensus 547 viVIatTN~~d~-------idpaL~r-----~GRfd----------------r~I--------~i~l~~~~~~~~~v~~~ 590 (1086)
.++|.|+|-..- ++.-+.+ .--|. ..+ -+..+|+.++-..+++.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~ 310 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLE 310 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecC
Confidence 566777665221 1100000 00000 000 12456677777777779
Q ss_pred CCCHHHHHHHHHH----HHc---------cCccccchHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 591 VPSPAQRLEILHA----LLS---------GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRRY 647 (1086)
Q Consensus 591 ~Pd~~eR~~IL~~----~l~---------~~~~~l~d~~l~~La~~--t~GfsgaDL~~L~~eA~~~a~rr~ 647 (1086)
+.+.++..+|+.. +++ +..+.+++..++.|++. ..++-.+.|+.++....+..+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999973 322 22345678889999986 456778889988888776666543
No 196
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.1e-12 Score=155.82 Aligned_cols=186 Identities=18% Similarity=0.245 Sum_probs=141.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|++.+++.|+.++... +.+..+||+||+|+||||+|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~ 78 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCIS 78 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHH
Confidence 46789999999999998877554 23567999999999999999999987632
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.++++++++-. .-..++.+.+.+.. ....|+||||+|.+. ....+.|+..|+
T Consensus 79 i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK~LE 141 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLKTLE 141 (491)
T ss_pred HhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHHHHh
Confidence 34666654321 12345566555432 345699999999883 345678888888
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+++|++|+.++.+.+.+++ |+. .+.+ ..++.++..+.++..+.+.+..+++..++.
T Consensus 142 eP--p~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f--------------~~l~~~el~~~L~~ia~~Egi~i~~eAL~l 202 (491)
T PRK14964 142 EP--APHVKFILATTEVKKIPVTIIS--RCQ-RFDL--------------QKIPTDKLVEHLVDIAKKENIEHDEESLKL 202 (491)
T ss_pred CC--CCCeEEEEEeCChHHHHHHHHH--hhe-eeec--------------ccccHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 74 4568888888888888888887 663 4555 889999999999999988888889999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
+++.+.| +.+++.++++.+..
T Consensus 203 Ia~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 203 IAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9999876 77777777776654
No 197
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.3e-12 Score=156.65 Aligned_cols=185 Identities=19% Similarity=0.226 Sum_probs=136.8
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------ 836 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------ 836 (1086)
.....|++++|++.+++.|..++.. .+.+.++||+||+|||||++|+++|+.+.+.
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALIS------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 3456899999999999999988874 1234579999999999999999999987652
Q ss_pred --------------EEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHH
Q 001395 837 --------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 898 (1086)
Q Consensus 837 --------------fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~ 898 (1086)
++.++.. .+.....+|+++..+.. +...|+||||+|.| ....+
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a~ 138 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAAF 138 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHHH
Confidence 2222221 12345678888877653 33469999999966 46788
Q ss_pred HHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcC
Q 001395 899 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 977 (1086)
Q Consensus 899 ~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~ 977 (1086)
+.||+.|+. ....+++|++|++++.+-+.+.+ |+ ..+.|+.++.++....+...+++.+.. ....+..+++.+.
T Consensus 139 naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 139 NALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 999999984 34578888888889989999988 87 578899999988888777777665443 2344777888887
Q ss_pred CCcHHHHHHHHHH
Q 001395 978 GCTGADISLICRE 990 (1086)
Q Consensus 978 g~sgadl~~l~~~ 990 (1086)
| +.+++.++++.
T Consensus 214 G-~lr~A~~lLek 225 (620)
T PRK14948 214 G-GLRDAESLLDQ 225 (620)
T ss_pred C-CHHHHHHHHHH
Confidence 7 34555555554
No 198
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.45 E-value=1.1e-12 Score=143.00 Aligned_cols=174 Identities=20% Similarity=0.282 Sum_probs=132.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC------cEEEEcccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV------NLFTVNGPEVV 481 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~------~~i~I~~s~l~ 481 (1086)
..++++.|++.+++.|+..+... ...++|||||||||||+.|+++|+++.. .+...+.++..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRR------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhc------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 45689999999999998877442 3456999999999999999999999865 34556666655
Q ss_pred cccchhhHHHHHHHHHHhhcC---------CC-eEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEe
Q 001395 482 SQNYGESEQALHEVFDSASQS---------AP-AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIA 551 (1086)
Q Consensus 482 s~~~Gese~~l~~vf~~a~~~---------~P-~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIa 551 (1086)
+..++ ..+++. |...... .| .|++|||.|.+ .......|...|+.. ...+.||.
T Consensus 101 Gisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~--s~~trFiL 164 (346)
T KOG0989|consen 101 GISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDF--SRTTRFIL 164 (346)
T ss_pred cccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhcc--ccceEEEE
Confidence 44321 111211 2222211 12 59999999988 467788999999985 45678899
Q ss_pred ccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 552 ATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 552 tTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
.||..+.|.+.+.+ |+. .+. |+....+.....|+.+..+.+..+++..++.++..++|
T Consensus 165 Icnylsrii~pi~S--RC~-Kfr--------------Fk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 165 ICNYLSRIIRPLVS--RCQ-KFR--------------FKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred EcCChhhCChHHHh--hHH-Hhc--------------CCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 99999999988887 664 233 37788888889999999999999999999999998887
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.44 E-value=5.7e-12 Score=149.46 Aligned_cols=203 Identities=20% Similarity=0.267 Sum_probs=140.9
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHh--------cCCeEEEEecCch
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARA--------NAPSIIFFDEIDG 879 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~--------~~p~ILflDEid~ 879 (1086)
+.+-+||+||||-||||||+.||+++|+.+++||+++-. +...+++.+..|.. ..|.+|++||||
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEID- 397 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID- 397 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEeccc-
Confidence 334489999999999999999999999999999999842 34445555544432 569999999999
Q ss_pred hhhhcCCCCCCCCccHHHHHHHHHHHhccc------cC-------------CCEEEEEecCCCCCCChhhhCCCCcceEe
Q 001395 880 LAAIRGKESDGVSVSDRVMSQLLVELDGLH------QR-------------VNVTVIAATNRPDKIDPALLRPGRFDRLL 940 (1086)
Q Consensus 880 L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~------~~-------------~~v~VI~aTN~p~~lD~aLlrpgRFd~~I 940 (1086)
+....+++.++..+..-. +. -..-|||++|+.. -|||..---|-.+|
T Consensus 398 ------------Ga~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 398 ------------GAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEII 463 (877)
T ss_pred ------------CCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEE
Confidence 334667777777765111 00 0246999999654 46664322477899
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 001395 941 YVGPPNETDREEIFRIHLRKIPCSSDV-NIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 941 ~~~~P~~~eR~~Il~~~l~~~~l~~d~-~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p 1019 (1086)
+|.+|...-..+-|+..+.+.++..+. .+..|++.|++ ||+++++.....+.........+.+.+..+.....+.
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~ 539 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKS 539 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccc
Confidence 999999988888888888776665332 36666666666 9999999998888765543445666666555444444
Q ss_pred CchhHHHHHHHHHHHH
Q 001395 1020 SEIHSYKELSAKFQRL 1035 (1086)
Q Consensus 1020 ~~~~~~~~~~~~~~~~ 1035 (1086)
.....+..|.+.|+-.
T Consensus 540 ~~~slf~~w~ei~ql~ 555 (877)
T KOG1969|consen 540 NSDSLFSWWKEIFQLR 555 (877)
T ss_pred cccchHHHHHHHHHHh
Confidence 4444555555555543
No 200
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.44 E-value=2.3e-12 Score=139.24 Aligned_cols=202 Identities=12% Similarity=0.207 Sum_probs=131.5
Q ss_pred ccccccc--cchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccc
Q 001395 772 VKWEDVG--GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 846 (1086)
Q Consensus 772 v~~~di~--G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~ 846 (1086)
.++++++ +.+.+.+.+++++. ...+.+++|+||+|||||++|+++++++ +.+++.+++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3455554 45556666666543 1345679999999999999999998875 5788888887764
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecC-CCCC
Q 001395 847 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK 925 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN-~p~~ 925 (1086)
... ..++.... ...+|+|||+|.+.. ....+..|...++....... .+|++|+ .+..
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~-----------~~~~~~~L~~~l~~~~~~~~-~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAG-----------QPEWQEALFHLYNRVREAGG-RLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcC-----------ChHHHHHHHHHHHHHHHcCC-eEEEECCCChHH
Confidence 321 23333322 235999999997732 11223445555544333333 4445554 4433
Q ss_pred C---ChhhhCCCCc--ceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 926 I---DPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 926 l---D~aLlrpgRF--d~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~ 999 (1086)
+ ++.+.+ || ...+.+++|+.+++..+++.++.+.++. .+..+..|++...| +.+++.++++++...+..+
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~~- 212 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLAA- 212 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 267776 66 4789999999999999999887655543 33346777776544 7899999999877655443
Q ss_pred cCCCCCCHHHHHHHH
Q 001395 1000 LDASRITMQHLKTAI 1014 (1086)
Q Consensus 1000 ~~~~~It~~d~~~al 1014 (1086)
...|+.+...+.+
T Consensus 213 --~~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 --KRKITIPFVKEVL 225 (226)
T ss_pred --CCCCCHHHHHHHh
Confidence 3568887776654
No 201
>PRK06893 DNA replication initiation factor; Validated
Probab=99.44 E-value=3.1e-12 Score=139.26 Aligned_cols=180 Identities=8% Similarity=0.108 Sum_probs=116.6
Q ss_pred CCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 886 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~ 886 (1086)
..++||||||||||+|++++|+++ +.....+...+. ......+++..+ ...+|+|||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~--- 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGN--- 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCC---
Confidence 347999999999999999999875 334444443321 111122333332 3469999999987432
Q ss_pred CCCCCCccHHHHHHHHHHHhccccCCCEE-EEEecCCCCCC---ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC
Q 001395 887 ESDGVSVSDRVMSQLLVELDGLHQRVNVT-VIAATNRPDKI---DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP 962 (1086)
Q Consensus 887 ~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~-VI~aTN~p~~l---D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~ 962 (1086)
......|+..++........+ |+.++..|..+ .+.+.+..++..++.++.|+.++|.+|++..+...+
T Consensus 107 --------~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 107 --------EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred --------hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 122334555555444333444 44455556554 488888444567889999999999999998887555
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 963 CS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 963 l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+. .+.-+..|++...| +.+.+..+++.....+..+ ...||...+++++
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~---~~~it~~~v~~~L 227 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA---QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHh
Confidence 54 34457888888886 6777777777654333322 3568988887765
No 202
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=1.7e-12 Score=154.03 Aligned_cols=190 Identities=15% Similarity=0.256 Sum_probs=131.5
Q ss_pred CCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccH-HHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 810 TGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESE-KAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese-~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
.+++||||+|||||+|++++|+++ +..++.+++.+++..+..... ..+.. |.......+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999874 467888888877655432211 11222 22222235789999999987432
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHH
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l 958 (1086)
...+..|+..++.+......+||++.+.|.. +++.+.+ ||. .++.+.+|+.+.|..|++..+
T Consensus 210 -----------~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 210 -----------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 2234455555555544445555555566654 4567777 774 588899999999999999998
Q ss_pred hcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 959 RKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 959 ~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
+..++. .+..++.||....| +.++|+.++.+....+... ...||.+...++++.+
T Consensus 277 ~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~---~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 277 EIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT---GEEVDLKEAILLLKDF 332 (440)
T ss_pred HhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHH
Confidence 755443 33447788888776 7889999888776655443 3568988888888765
No 203
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=3.8e-12 Score=136.92 Aligned_cols=203 Identities=22% Similarity=0.294 Sum_probs=146.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~ 483 (1086)
...+++++|++.+++.|.+..... +.-.|..++||+|+.|||||++++++..++ |..+++|...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~F--------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~-- 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQF--------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG-- 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH--------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc--
Confidence 345689999999999999987665 233578999999999999999999999876 6788888876652
Q ss_pred cchhhHHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc--ccCCCeeEEeccCCCCCCC
Q 001395 484 NYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l--~~~~~viVIatTN~~d~id 560 (1086)
.+..+++..+ ...+-|||+|++- +. . ...-...|..+||+- ....+|++.+|+|+...+.
T Consensus 93 -------~l~~l~~~l~~~~~kFIlf~DDLs--Fe-----~---~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 93 -------DLPELLDLLRDRPYKFILFCDDLS--FE-----E---GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred -------cHHHHHHHHhcCCCCEEEEecCCC--CC-----C---CcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 2344444433 2245699999963 11 1 122336788888875 3457899999999987776
Q ss_pred ccccCCCCcc---eeeeh------hhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH----HHHHcCCC
Q 001395 561 PALRRPGRLD---REIEI------DMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY----LSMATHGF 627 (1086)
Q Consensus 561 paL~r~GRfd---r~I~i------~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~----La~~t~Gf 627 (1086)
..+.. |-+ .+|+. .++...+|+-++.|..|+.++.++|++.++...++.++...+.. .+....|.
T Consensus 156 E~~~d--~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~R 233 (249)
T PF05673_consen 156 ESFSD--REDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGR 233 (249)
T ss_pred hhhhh--ccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 54433 211 12222 45778899999999999999999999999998888777655433 34446778
Q ss_pred cHHHHHHHHHH
Q 001395 628 VGADLAALCNE 638 (1086)
Q Consensus 628 sgaDL~~L~~e 638 (1086)
+|+-..+.++.
T Consensus 234 SGRtA~QF~~~ 244 (249)
T PF05673_consen 234 SGRTARQFIDD 244 (249)
T ss_pred CHHHHHHHHHH
Confidence 88877776654
No 204
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.43 E-value=1.7e-12 Score=149.43 Aligned_cols=197 Identities=24% Similarity=0.398 Sum_probs=139.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc-ccch
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYG 486 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~---~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s-~~~G 486 (1086)
..|+|+++.++.+..++... ++.....-+.. .+.++||+||||||||++|+++|+.++.+|+.+++..+.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~-~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNR-WRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred cccCCHHHHHHHHHHHHHHH-HHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 45999999999998887553 11110001111 3589999999999999999999999999999999998885 6888
Q ss_pred -hhHHHHHHHHHHhh-----------------------------------------------------------------
Q 001395 487 -ESEQALHEVFDSAS----------------------------------------------------------------- 500 (1086)
Q Consensus 487 -ese~~l~~vf~~a~----------------------------------------------------------------- 500 (1086)
+.+..++.+|+.|.
T Consensus 94 ~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~i 173 (443)
T PRK05201 94 RDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEI 173 (443)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEE
Confidence 55667777766660
Q ss_pred -----c--------------------------------------------------------------------CCCeEE
Q 001395 501 -----Q--------------------------------------------------------------------SAPAVV 507 (1086)
Q Consensus 501 -----~--------------------------------------------------------------------~~P~IL 507 (1086)
. ..-.|+
T Consensus 174 ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIV 253 (443)
T PRK05201 174 EIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIV 253 (443)
T ss_pred EEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0 023499
Q ss_pred EEccchhhccCCCCCCchhH-HHHHHHHHHHhhccc--------cCCCeeEEeccC----CCCCCCccccCCCCcceeee
Q 001395 508 FIDELDAIAPARKDGGEELS-QRMVATLLNLMDGVC--------RTDGVLVIAATN----RPDSIEPALRRPGRLDREIE 574 (1086)
Q Consensus 508 fIDEiD~l~~~r~~~~~~~~-~rv~~~Ll~lLd~l~--------~~~~viVIatTN----~~d~idpaL~r~GRfdr~I~ 574 (1086)
||||||.|+.+.+..+.+.+ .-++..||.+|++-. ..++++||++.- .|+++-|.|. |||...+.
T Consensus 254 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 254 FIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 99999999976543333333 458889999998832 346788888763 4566667775 59988888
Q ss_pred hhhhhhhhhcccCCCCCCCHHHHHHHHHH----HHccC---------ccccchHHHHHHHHHc
Q 001395 575 IDMSFLFSLLKNSPAAVPSPAQRLEILHA----LLSGM---------EHSLLDSEVEYLSMAT 624 (1086)
Q Consensus 575 i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~----~l~~~---------~~~l~d~~l~~La~~t 624 (1086)
+ ..++.++..+||.. +++++ .+..++..++.+|+..
T Consensus 332 L--------------~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 332 L--------------DALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred C--------------CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 8 88999999999832 33221 2234566677776653
No 205
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.43 E-value=4.7e-12 Score=137.41 Aligned_cols=200 Identities=13% Similarity=0.169 Sum_probs=133.0
Q ss_pred Cccccccc--cchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcc
Q 001395 771 KVKWEDVG--GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL 845 (1086)
Q Consensus 771 ~v~~~di~--G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel 845 (1086)
..+|+++. +.+.+...++++.. +.....+++|+||+|||||++|++++++. +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 35677755 33455555555443 22345679999999999999999998874 678888887664
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC-
Q 001395 846 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD- 924 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~- 924 (1086)
... +. ......+|+|||+|.+. ...+..|+..++........++|++++.+.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~-------------~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLD-------------DAQQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcC-------------chHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 311 11 12245699999999762 223445555665444344444555554332
Q ss_pred --CCChhhhCCCCc--ceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 925 --KIDPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 925 --~lD~aLlrpgRF--d~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~ 999 (1086)
.+.+.+.+ || ...+.+++|+.+++..+++.+..+.++. .+.-++.|++...| +.+++.++++.....+...
T Consensus 135 ~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~- 210 (227)
T PRK08903 135 ALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ- 210 (227)
T ss_pred hCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-
Confidence 24577776 66 4689999999999999998877665554 33357778886665 7888888888765555444
Q ss_pred cCCCCCCHHHHHHHHH
Q 001395 1000 LDASRITMQHLKTAIR 1015 (1086)
Q Consensus 1000 ~~~~~It~~d~~~al~ 1015 (1086)
...||...+++++.
T Consensus 211 --~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 --KRPVTLPLLREMLA 224 (227)
T ss_pred --CCCCCHHHHHHHHh
Confidence 36799888888775
No 206
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.43 E-value=9.1e-12 Score=151.31 Aligned_cols=181 Identities=22% Similarity=0.314 Sum_probs=123.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEV 480 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~s~l 480 (1086)
+.|.|.++++++|..++... +. +-.+...++|+|+||||||++++.+.+++ .+.+++|||..+
T Consensus 755 D~LPhREeEIeeLasfL~pa-Ik------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESG-IK------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHH-Hh------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 67899999999999988766 21 22233345699999999999999998765 256789999664
Q ss_pred ccccc----------------h-hhHHHHHHHHHHhh--cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc
Q 001395 481 VSQNY----------------G-ESEQALHEVFDSAS--QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 541 (1086)
Q Consensus 481 ~s~~~----------------G-ese~~l~~vf~~a~--~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l 541 (1086)
...+. | .+...+..+|.... .....||+|||||.|... .+.+ |+.+++..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDV---LYnLFR~~ 896 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKV---LFTLFDWP 896 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHH---HHHHHHHh
Confidence 43310 1 12334556666542 233569999999999642 1233 44444432
Q ss_pred c-cCCCeeEEeccCC---CCCCCccccCCCCccee-eehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHH
Q 001395 542 C-RTDGVLVIAATNR---PDSIEPALRRPGRLDRE-IEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSE 616 (1086)
Q Consensus 542 ~-~~~~viVIatTN~---~d~idpaL~r~GRfdr~-I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~ 616 (1086)
. ....++||+++|. ++.+++.+++ ||... +.| ++|+.+++.+||+..+......+++..
T Consensus 897 ~~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF--------------~PYTaEQL~dILk~RAe~A~gVLdDdA 960 (1164)
T PTZ00112 897 TKINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVF--------------SPYKGDEIEKIIKERLENCKEIIDHTA 960 (1164)
T ss_pred hccCCeEEEEEecCchhcchhhhhhhhh--ccccccccC--------------CCCCHHHHHHHHHHHHHhCCCCCCHHH
Confidence 2 3457899999986 4456677777 55432 444 999999999999998876544567778
Q ss_pred HHHHHHHcC
Q 001395 617 VEYLSMATH 625 (1086)
Q Consensus 617 l~~La~~t~ 625 (1086)
++.+|+...
T Consensus 961 IELIArkVA 969 (1164)
T PTZ00112 961 IQLCARKVA 969 (1164)
T ss_pred HHHHHHhhh
Confidence 888877443
No 207
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.5e-12 Score=156.44 Aligned_cols=185 Identities=17% Similarity=0.276 Sum_probs=137.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|.+.+++.|+.++.... .+..+||+||+||||||+|+++|+.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-----------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-----------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 567899999999999999886552 24458999999999999999999988641
Q ss_pred -------------EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHH
Q 001395 472 -------------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATL 534 (1086)
Q Consensus 472 -------------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~L 534 (1086)
++.+++.+- ..-..++++.+.+.. +...|+||||+|.|. ....+.|
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~NaL 144 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAFNAM 144 (618)
T ss_pred HHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHHHHH
Confidence 333333211 112235555554322 234699999999983 3456778
Q ss_pred HHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccch
Q 001395 535 LNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLD 614 (1086)
Q Consensus 535 l~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d 614 (1086)
+..|+. ..+.+.+|++|+.+..+.+.+++ |+ ..+.+ ..++.++..+.|+..+.+.+..+++
T Consensus 145 LKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f--------------~~Ls~eei~~~L~~i~~~egi~ie~ 205 (618)
T PRK14951 145 LKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNL--------------RPMAPETVLEHLTQVLAAENVPAEP 205 (618)
T ss_pred HHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeec--------------CCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 888876 34567888888888888888887 65 35555 8899999999999988888888888
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 615 ~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
..++.|++.+.| +.+++.+++..+.
T Consensus 206 ~AL~~La~~s~G-slR~al~lLdq~i 230 (618)
T PRK14951 206 QALRLLARAARG-SMRDALSLTDQAI 230 (618)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 899999998887 6777777766554
No 208
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.42 E-value=2.9e-12 Score=145.90 Aligned_cols=176 Identities=20% Similarity=0.300 Sum_probs=123.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..+++++|.+.+++.++..+... ..+..+||+||||+|||++|++++++++.+++.+++.+ .. ...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~ 83 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDF 83 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHH
Confidence 45689999999999999887533 23445667999999999999999999999999999876 22 222
Q ss_pred hHHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCC
Q 001395 488 SEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRP 566 (1086)
Q Consensus 488 se~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~ 566 (1086)
....+........ ...+.||||||+|.+.. ......|..+|+.. ..++.+|+++|.+..+.+++++
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~~l~s- 150 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANNKNGIIEPLRS- 150 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCChhhchHHHHh-
Confidence 2222333222221 13567999999998721 12334566666654 3567888899999999999998
Q ss_pred CCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHc-------cCccccchHHHHHHHHHcCC
Q 001395 567 GRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLS-------GMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 567 GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~-------~~~~~l~d~~l~~La~~t~G 626 (1086)
||. .+.+ +.|+.+++.++++.++. ..+..+++..+..++....|
T Consensus 151 -R~~-~i~~--------------~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 151 -RCR-VIDF--------------GVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred -hce-EEEe--------------CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 884 5666 88999999888765433 23445666677777776554
No 209
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.6e-12 Score=161.27 Aligned_cols=188 Identities=18% Similarity=0.229 Sum_probs=135.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+.++... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 45789999999999999988654 234458999999999999999999998642
Q ss_pred ----------EEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc
Q 001395 472 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 541 (1086)
Q Consensus 472 ----------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l 541 (1086)
|+.+++.+.. .+.+....+..++.........|+||||+|.|. ....+.|++.|+..
T Consensus 81 ~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaLLK~LEEp 147 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNALLKIVEEP 147 (824)
T ss_pred HHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHHHHHHhCC
Confidence 3344332211 111222222222222223455799999999993 45677899999874
Q ss_pred ccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHH
Q 001395 542 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS 621 (1086)
Q Consensus 542 ~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La 621 (1086)
...++||++|+.++.|.+.|++ |+ .++.| ..++.++..++|+..+.+.++.+++..+..++
T Consensus 148 --P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F--------------~~l~~~~l~~~L~~il~~EGv~id~eal~lLa 208 (824)
T PRK07764 148 --PEHLKFIFATTEPDKVIGTIRS--RT-HHYPF--------------RLVPPEVMRGYLERICAQEGVPVEPGVLPLVI 208 (824)
T ss_pred --CCCeEEEEEeCChhhhhHHHHh--he-eEEEe--------------eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4578888888888888888988 65 35666 77899999999999988888878888888888
Q ss_pred HHcCCCcHHHHHHHHHHH
Q 001395 622 MATHGFVGADLAALCNEA 639 (1086)
Q Consensus 622 ~~t~GfsgaDL~~L~~eA 639 (1086)
+...| +.+++..+++..
T Consensus 209 ~~sgG-dlR~Al~eLEKL 225 (824)
T PRK07764 209 RAGGG-SVRDSLSVLDQL 225 (824)
T ss_pred HHcCC-CHHHHHHHHHHH
Confidence 88776 556666555543
No 210
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.42 E-value=7.2e-12 Score=136.96 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=116.4
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhC---CcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 886 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~---~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~ 886 (1086)
..++||||+|||||+|+++++++.. ..+..+...+... ...++++.... ..+|+|||++.+..+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 4699999999999999999998753 3444554433211 11122222222 249999999987421
Q ss_pred CCCCCCccHHHHHHHHHHHhccccCCCEEEEEecC-CCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhc
Q 001395 887 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRK 960 (1086)
Q Consensus 887 ~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN-~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~ 960 (1086)
......|...++...+.++..+|+||+ .|.. +.|.|.+ ||. .++.+.+|+.+++.++++.+...
T Consensus 113 --------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 113 --------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred --------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 233334444444433344444555554 4444 5799998 885 68999999999999999987766
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 961 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 961 ~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
.++. .+.-++.|++..+| +.+.+..+++.....++.+ ...||...+++++
T Consensus 183 ~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~---~~~it~~~~k~~l 233 (235)
T PRK08084 183 RGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA---QRKLTIPFVKEIL 233 (235)
T ss_pred cCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHH
Confidence 5554 34457888888887 7788888887654333332 3568988887765
No 211
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.8e-12 Score=152.73 Aligned_cols=183 Identities=19% Similarity=0.289 Sum_probs=133.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|++.+++.|+.++... ..+..+||||||||||||+|+++|+.+.+
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i 79 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV 79 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH
Confidence 45689999999999999988654 23445799999999999999999998853
Q ss_pred ------cEEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc
Q 001395 471 ------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 540 (1086)
Q Consensus 471 ------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~ 540 (1086)
.++.+++.+- . .-..++.+.+.+. ...+.||||||+|.+ .......|+..|+.
T Consensus 80 ~~~~h~dv~el~~~~~----~--~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naLLk~LEe 142 (504)
T PRK14963 80 RRGAHPDVLEIDAASN----N--SVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNALLKTLEE 142 (504)
T ss_pred hcCCCCceEEeccccc----C--CHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHHHHHHHh
Confidence 1455554321 1 1223444433322 235679999999876 24456778887776
Q ss_pred cccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHH
Q 001395 541 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620 (1086)
Q Consensus 541 l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~L 620 (1086)
. ...+++|++|+.+..+.+.+++ |+. .+.+ ..|+.++....++..+.+.+..+++..++.+
T Consensus 143 p--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f--------------~~ls~~el~~~L~~i~~~egi~i~~~Al~~i 203 (504)
T PRK14963 143 P--PEHVIFILATTEPEKMPPTILS--RTQ-HFRF--------------RRLTEEEIAGKLRRLLEAEGREAEPEALQLV 203 (504)
T ss_pred C--CCCEEEEEEcCChhhCChHHhc--ceE-EEEe--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3 3567888888988999999887 664 5666 8999999999999999888888888999999
Q ss_pred HHHcCCCcHHHHHHHHHH
Q 001395 621 SMATHGFVGADLAALCNE 638 (1086)
Q Consensus 621 a~~t~GfsgaDL~~L~~e 638 (1086)
+..+.| ..+++.++++.
T Consensus 204 a~~s~G-dlR~aln~Lek 220 (504)
T PRK14963 204 ARLADG-AMRDAESLLER 220 (504)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 998887 34444444443
No 212
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4e-12 Score=152.90 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=135.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|.+.+++.|+..+... +.+..+||+||+|||||++|+.+|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 45789999999999998887654 23455899999999999999999998754
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.++.+++..- .| -..++.+.+.+. .+...|+||||+|.+ .....+.|+..|+
T Consensus 82 i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~naLLK~LE 144 (546)
T PRK14957 82 INNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFNALLKTLE 144 (546)
T ss_pred HhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHHHHHHHHh
Confidence 2334433211 11 112344444332 234569999999988 3456778888888
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+++|++|+.+..+.+.+++ |+ ..+++ ..++.++....++..+...+..+++..++.
T Consensus 145 ep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f--------------~~Ls~~eI~~~L~~il~~egi~~e~~Al~~ 205 (546)
T PRK14957 145 EP--PEYVKFILATTDYHKIPVTILS--RC-IQLHL--------------KHISQADIKDQLKIILAKENINSDEQSLEY 205 (546)
T ss_pred cC--CCCceEEEEECChhhhhhhHHH--he-eeEEe--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 63 4567788888888888888887 66 45666 889999999999988887777788899999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
++..+.| +.+++.+++..+.
T Consensus 206 Ia~~s~G-dlR~alnlLek~i 225 (546)
T PRK14957 206 IAYHAKG-SLRDALSLLDQAI 225 (546)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9988865 5666666666554
No 213
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.2e-12 Score=154.63 Aligned_cols=186 Identities=19% Similarity=0.259 Sum_probs=132.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|.+.+++.|+.++.... -+..+||+||||||||++|+++|+.+.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-----------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-----------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 457899999999999999886541 24569999999999999999999988652
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHH-hhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDS-ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC 542 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~-a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~ 542 (1086)
++++++..- ..+.+.. .+...+.. .......||||||+|.+. ....+.|+..|+..
T Consensus 82 i~~g~hpDv~eId~a~~--~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~LEEP- 146 (624)
T PRK14959 82 VTQGMHVDVVEIDGASN--RGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLKTLEEP- 146 (624)
T ss_pred HhcCCCCceEEEecccc--cCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHHHhhcc-
Confidence 444544221 1111111 22222222 122345699999999883 44567888888763
Q ss_pred cCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHH
Q 001395 543 RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSM 622 (1086)
Q Consensus 543 ~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~ 622 (1086)
.+.+++|++|+.+..+.+.+++ |+. .+.| +.++.++...+|+..+...+..+++..++.++.
T Consensus 147 -~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F--------------~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 147 -PARVTFVLATTEPHKFPVTIVS--RCQ-HFTF--------------TRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred -CCCEEEEEecCChhhhhHHHHh--hhh-cccc--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4578888999988888888887 663 4555 899999999999988887777788899999999
Q ss_pred HcCCCcHHHHHHHHHH
Q 001395 623 ATHGFVGADLAALCNE 638 (1086)
Q Consensus 623 ~t~GfsgaDL~~L~~e 638 (1086)
.+.| ..+++.+++..
T Consensus 209 ~s~G-dlR~Al~lLeq 223 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQ 223 (624)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 8876 33444444443
No 214
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=8.5e-12 Score=153.18 Aligned_cols=202 Identities=18% Similarity=0.234 Sum_probs=142.5
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+.+|++++|++.+++.|+.++.. -+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 445899999999999999888763 1344558999999999999999999886532
Q ss_pred ------------EEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHH
Q 001395 837 ------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 900 (1086)
Q Consensus 837 ------------fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~ 900 (1086)
++.+++.. ......+|++.+.+.. ....||||||+|.| ....++.
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-------------~~~a~na 139 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-------------STAAFNA 139 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-------------CHHHHHH
Confidence 22232211 1123445666554432 33569999999966 4567888
Q ss_pred HHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCC
Q 001395 901 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGC 979 (1086)
Q Consensus 901 LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~ 979 (1086)
|++.|+.. ..++++|++|+..+.+.+.+.+ |+. ++.|+.++..+...+++..+.+.++. .+..+..|+..+.|
T Consensus 140 LLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 99999864 3467788888888888888887 774 68899999999999988888766654 33447778888877
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 980 TGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 980 sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+.+++.+.++....+ ....|+.+++...+
T Consensus 214 dlr~al~~LekL~~y------~~~~It~e~V~~ll 242 (585)
T PRK14950 214 SMRDAENLLQQLATT------YGGEISLSQVQSLL 242 (585)
T ss_pred CHHHHHHHHHHHHHh------cCCCCCHHHHHHHh
Confidence 666666666654332 13457776665443
No 215
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.42 E-value=7.9e-13 Score=157.98 Aligned_cols=259 Identities=20% Similarity=0.256 Sum_probs=164.7
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCcccccc--
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSKW-- 849 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~~-- 849 (1086)
..++|.......+.+.+... ......++++|++||||+++|+++... .+.+|+.++|..+...+
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred cceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 34566655555544443321 123456999999999999999999765 45799999998763211
Q ss_pred ---ccc----cHHH---HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------c
Q 001395 850 ---VGE----SEKA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 910 (1086)
Q Consensus 850 ---vGe----se~~---ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~ 910 (1086)
.|. .... ....+. .....+||||||+.| ...++..|+..|+... .
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ld~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFE---RANEGTLLLDEIGEM-------------PLVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEEechhhC-------------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 110 0000 001122 233459999999965 5678889999886432 1
Q ss_pred CCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhcC----CCC-CcccH---HH
Q 001395 911 RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRKI----PCS-SDVNI---RE 971 (1086)
Q Consensus 911 ~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~~----~l~-~d~~l---~~ 971 (1086)
..++.||++||..-. .+.+.|+|.. .+.+..|...+|.+ +++.++.+. ... ...+- ..
T Consensus 276 ~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 235899999986532 4445566654 45577788888755 444444332 111 12232 33
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC--C--C-----chhHHHHHHHHHHHHHhccccc
Q 001395 972 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ--P--S-----EIHSYKELSAKFQRLVHSNAEA 1042 (1086)
Q Consensus 972 La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~--p--~-----~~~~~~~~~~~~~~~~~~~~~~ 1042 (1086)
|....=--+.+++++++++|+..+ +...|+.+|+...+.... + . ....+....+.+++.++..+..
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~-----~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~ 427 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN-----SGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLE 427 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC-----CCCcccHHHChHhhhcccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 332221224699999999887654 345688888865442210 0 0 0113445567899999999999
Q ss_pred cccccccccccccchh---HHHHHhhceE
Q 001395 1043 DESGYQLRPSKSIGSN---MWTLIKSISL 1068 (1086)
Q Consensus 1043 ~~~~~~~~~~~~~g~~---L~~~~k~~~~ 1068 (1086)
.+.|+...+++.+|++ ||+|||++|+
T Consensus 428 ~~~gn~~~aA~~LGisr~tL~rkl~~~~i 456 (457)
T PRK11361 428 QQEGNRTRTALMLGISRRALMYKLQEYGI 456 (457)
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHhCC
Confidence 9999999999999999 9999999986
No 216
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=9.6e-12 Score=152.62 Aligned_cols=186 Identities=23% Similarity=0.268 Sum_probs=138.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC---------------
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--------------- 835 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~--------------- 835 (1086)
+.+|++|+|++.+++.|...+.. -+.+..+|||||+|+|||++|+++|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 35899999999999999988863 235666999999999999999999997642
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
+++.+++.+- .....++.+...+.. +...|++|||+|.| +...++.|
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-------------s~~a~naL 141 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-------------SQAAFNAF 141 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-------------CHHHHHHH
Confidence 3444433211 124567777766643 23459999999966 45678899
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~t~g~s 980 (1086)
+..|+.. ..+.++|++|+.+..|-+++.+ |+ .++.|.+++.++....++..+++.++..+ ..+..|+..+.| +
T Consensus 142 LK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 142 LKTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred HHHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999854 4467788888888899999998 77 47999999999999999988877776533 347788888876 5
Q ss_pred HHHHHHHHHHHHH
Q 001395 981 GADISLICREAAI 993 (1086)
Q Consensus 981 gadl~~l~~~A~~ 993 (1086)
.+++.+.+...+.
T Consensus 216 lr~al~~Lekl~~ 228 (614)
T PRK14971 216 MRDALSIFDQVVS 228 (614)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 217
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.7e-12 Score=155.30 Aligned_cols=186 Identities=23% Similarity=0.320 Sum_probs=136.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|.+.+++.|+..+... +.+..+||+||||+||||+|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 46789999999999999888654 234568999999999999999999988652
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+. ....+.|+..|+
T Consensus 82 i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~LE 144 (527)
T PRK14969 82 IDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKTLE 144 (527)
T ss_pred HhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHHHh
Confidence 23333221 0112345666665432 234699999999883 345678888888
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
. ..+.+++|++|+.++.+.+.+++ |+ ..+.+ ..++.++....+...+...+...++..+..
T Consensus 145 e--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f--------------~~l~~~~i~~~L~~il~~egi~~~~~al~~ 205 (527)
T PRK14969 145 E--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNL--------------KQMPPPLIVSHLQHILEQENIPFDATALQL 205 (527)
T ss_pred C--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhc--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7 34678888888888888877776 54 34444 899999999888888877777778888899
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
++..+.| +.+++.+++..+..
T Consensus 206 la~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 206 LARAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9988776 56777777766643
No 218
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.41 E-value=2.9e-12 Score=147.44 Aligned_cols=198 Identities=24% Similarity=0.395 Sum_probs=139.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHh-hhc-CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc-ccch-
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTL-SSL-GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYG- 486 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~-~~l-gi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s-~~~G- 486 (1086)
.-|+|+++.++.+..++.....+..+ ..+ .-.+++++||+||||||||++|+++|+.++.+|+.+++..+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45899999999998887654111111 011 1224689999999999999999999999999999999988874 6877
Q ss_pred hhHHHHHHHHHHh---------------------------------h---------------------------------
Q 001395 487 ESEQALHEVFDSA---------------------------------S--------------------------------- 500 (1086)
Q Consensus 487 ese~~l~~vf~~a---------------------------------~--------------------------------- 500 (1086)
+.+..++.+|+.| .
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 5677777776654 0
Q ss_pred -------------------------------------------------------------------------cCCCeEE
Q 001395 501 -------------------------------------------------------------------------QSAPAVV 507 (1086)
Q Consensus 501 -------------------------------------------------------------------------~~~P~IL 507 (1086)
..+..|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0123499
Q ss_pred EEccchhhccCCCCCCchh-HHHHHHHHHHHhhccc--------cCCCeeEEeccC----CCCCCCccccCCCCcceeee
Q 001395 508 FIDELDAIAPARKDGGEEL-SQRMVATLLNLMDGVC--------RTDGVLVIAATN----RPDSIEPALRRPGRLDREIE 574 (1086)
Q Consensus 508 fIDEiD~l~~~r~~~~~~~-~~rv~~~Ll~lLd~l~--------~~~~viVIatTN----~~d~idpaL~r~GRfdr~I~ 574 (1086)
||||||.|+.+....+.+. ..-++..||.+|++-. ...+++||++.- .|+++-|.|. |||...+.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 329 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVE 329 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 9999999997653333333 3447889999998832 346788888763 4556667774 59988888
Q ss_pred hhhhhhhhhcccCCCCCCCHHHHHHHHH----HHHcc-------C--ccccchHHHHHHHHHc
Q 001395 575 IDMSFLFSLLKNSPAAVPSPAQRLEILH----ALLSG-------M--EHSLLDSEVEYLSMAT 624 (1086)
Q Consensus 575 i~l~~~~~~~~~v~~~~Pd~~eR~~IL~----~~l~~-------~--~~~l~d~~l~~La~~t 624 (1086)
+ ..++.++...||. .++++ . .+..++..++.+|+..
T Consensus 330 L--------------~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 330 L--------------QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred C--------------CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 8 8899999999983 22222 1 2234566666666653
No 219
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4e-12 Score=154.75 Aligned_cols=186 Identities=21% Similarity=0.312 Sum_probs=140.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----------------
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV---------------- 470 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~---------------- 470 (1086)
...|++++|.+.+++.|+..+... ..+..+||+||+|||||++|+.+|+.+++
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 356789999999999999988654 23556899999999999999999998753
Q ss_pred --------cEEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHh
Q 001395 471 --------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 538 (1086)
Q Consensus 471 --------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lL 538 (1086)
.++.+++.. +..-..++.+.+.+. .....|+||||+|.|. ....+.|+..|
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLKtL 143 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLKTL 143 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHHh
Confidence 344444421 112334566666543 2345699999999883 34567888888
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
+.. ...+++|++|+.++.+.+.+++ |+. .+.+ ..|+.++...+++..+.+.+..+++..+.
T Consensus 144 Eep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f--------------~~~~~~ei~~~L~~i~~~egi~i~~~al~ 204 (559)
T PRK05563 144 EEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDF--------------KRISVEDIVERLKYILDKEGIEYEDEALR 204 (559)
T ss_pred cCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEec--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 763 4567888888889999999988 764 4556 88999999999999998888888888999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHH
Q 001395 619 YLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
.++....| ..+++..+++.+.
T Consensus 205 ~ia~~s~G-~~R~al~~Ldq~~ 225 (559)
T PRK05563 205 LIARAAEG-GMRDALSILDQAI 225 (559)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH
Confidence 99998877 6777777666554
No 220
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.41 E-value=1.2e-11 Score=140.46 Aligned_cols=205 Identities=23% Similarity=0.271 Sum_probs=139.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC-----CcEEEEeCCc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGPE 844 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~-----~~fi~v~~se 844 (1086)
.+.+|++++|++++++.++.++... ...+++|+||||||||++|+++++++. .+++.+++++
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 3468999999999999999887531 123589999999999999999998862 3556665544
Q ss_pred cccccccccHHHHHHHHHH-HHh-----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEE
Q 001395 845 LFSKWVGESEKAVRSLFAK-ARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 918 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~-A~~-----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~ 918 (1086)
..+ ...++..+.. +.. ..+.+|+|||+|.+ ....++.|+..++... ....+|+
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-------------~~~~~~~L~~~le~~~--~~~~lIl 137 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-------------TSDAQQALRRTMEMYS--QNTRFIL 137 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-------------CHHHHHHHHHHHhcCC--CCCeEEE
Confidence 211 1112222221 211 23569999999966 2344567777777543 3456777
Q ss_pred ecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 919 ATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 919 aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~ 997 (1086)
++|.+..+.+++.+ |+. ++.|++++.++...+++.++++.+.. .+..+..++..+.| +.+.+.+.++.++..
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~--- 210 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT--- 210 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc---
Confidence 78888888788887 775 68999999999999999998776653 44457888888776 333444444433321
Q ss_pred HhcCCCCCCHHHHHHHHHhhCC
Q 001395 998 ENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 998 ~~~~~~~It~~d~~~al~~~~p 1019 (1086)
...||.+++..++....+
T Consensus 211 ----~~~it~~~v~~~~~~~~~ 228 (319)
T PRK00440 211 ----GKEVTEEAVYKITGTARP 228 (319)
T ss_pred ----CCCCCHHHHHHHhCCCCH
Confidence 357898888877755443
No 221
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.5e-12 Score=153.79 Aligned_cols=185 Identities=19% Similarity=0.272 Sum_probs=135.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|++.+++.|+.++... +.+..+||+||+||||||+|+++|+.+++
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 45789999999999999988654 23445899999999999999999998763
Q ss_pred ---------cEEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHH
Q 001395 471 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 537 (1086)
Q Consensus 471 ---------~~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~l 537 (1086)
.++.+++.... .+ ..++++.+.+ ......|+||||+|.+- ....+.|+..
T Consensus 79 i~~~~~~~~dvieidaas~~--gv----d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NALLK~ 141 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHG--GV----DDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNALLKI 141 (584)
T ss_pred hhcccCCCceEEEecccccc--CH----HHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHHHHH
Confidence 23344432211 11 2233333322 12344699999999883 3467788998
Q ss_pred hhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHH
Q 001395 538 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEV 617 (1086)
Q Consensus 538 Ld~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l 617 (1086)
|+. ..+.+++|++|+.++.+.+++++ |. ..+.| ..++.++..+.++..+.+.+..+++..+
T Consensus 142 LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F--------------~~l~~~~i~~~L~~i~~~egi~i~~~al 202 (584)
T PRK14952 142 VEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPF--------------RLLPPRTMRALIARICEQEGVVVDDAVY 202 (584)
T ss_pred Hhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEe--------------eCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 887 34678889889988999999988 64 45666 7888999999999988888877888888
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHH
Q 001395 618 EYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 618 ~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
..++....| +.+++.++++.+.
T Consensus 203 ~~Ia~~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 203 PLVIRAGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Confidence 888876665 5666666666543
No 222
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.41 E-value=7.7e-12 Score=143.30 Aligned_cols=176 Identities=19% Similarity=0.308 Sum_probs=123.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEcccccccc
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVVSQ 483 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-----~~~i~I~~s~l~s~ 483 (1086)
.+++++|.+.+++.|..++... ...+++|+||||||||++|+++++++. .+++.+++.++...
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~ 80 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ 80 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc
Confidence 4578999999999988877543 123699999999999999999999873 35678888765422
Q ss_pred c-------------chh-------hHHHHHHHHHHhhc-----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHh
Q 001395 484 N-------------YGE-------SEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 538 (1086)
Q Consensus 484 ~-------------~Ge-------se~~l~~vf~~a~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lL 538 (1086)
. ++. ....++.+.+.... ..+.+|||||+|.+. ......|...|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~~L~~~l 149 (337)
T PRK12402 81 GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQALRRIM 149 (337)
T ss_pred chhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHHHHHHHH
Confidence 1 111 01223333333222 234699999999873 22345677777
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
+... ....+|++++.+..+.+.+++ |+ ..+++ .+|+.++...+++..+...+..+++..++
T Consensus 150 e~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 150 EQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFF--------------RAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred Hhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEe--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7643 234566666666677777877 65 35666 88999999999999998888888999999
Q ss_pred HHHHHcCC
Q 001395 619 YLSMATHG 626 (1086)
Q Consensus 619 ~La~~t~G 626 (1086)
.++..+.|
T Consensus 211 ~l~~~~~g 218 (337)
T PRK12402 211 LIAYYAGG 218 (337)
T ss_pred HHHHHcCC
Confidence 99998854
No 223
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=8.3e-12 Score=144.86 Aligned_cols=204 Identities=17% Similarity=0.227 Sum_probs=133.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEcccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVV 481 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg---------~~~i~I~~s~l~ 481 (1086)
+++.|.+++++.|...+... .. + ..+.+++|+||||||||++++++++++. ..++.++|....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~-~~------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPI-LR------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHH-Hc------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 57899999999999988764 11 2 3456799999999999999999998652 467888986543
Q ss_pred ccc---------c---h--------hhHHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc
Q 001395 482 SQN---------Y---G--------ESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 540 (1086)
Q Consensus 482 s~~---------~---G--------ese~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~ 540 (1086)
+.+ . | ........+++... ...+.||+|||+|.+.... ..++..|+.+.+.
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~~ 158 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARSN 158 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhccccc
Confidence 210 0 1 01223344454443 3456799999999997211 1234445444221
Q ss_pred cc-cCCCeeEEeccCCCC---CCCccccCCCCcc-eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc--Cccccc
Q 001395 541 VC-RTDGVLVIAATNRPD---SIEPALRRPGRLD-REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG--MEHSLL 613 (1086)
Q Consensus 541 l~-~~~~viVIatTN~~d---~idpaL~r~GRfd-r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~--~~~~l~ 613 (1086)
.. ...++.+|+++|.++ .+++.+.+ ||. +.+.+ ++++.++..+|++..+.. .+..++
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f--------------~p~~~~e~~~il~~r~~~~~~~~~~~ 222 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIF--------------PPYDAEELRDILENRAEKAFYDGVLD 222 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeee--------------CCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 11 235788999999876 46677766 664 44566 999999999999998862 222345
Q ss_pred hHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 614 DSEVEYLSMA---THGFVGADLAALCNEAALVCLRRY 647 (1086)
Q Consensus 614 d~~l~~La~~---t~GfsgaDL~~L~~eA~~~a~rr~ 647 (1086)
+..++.++.. +.| ..+.+..+|+.|+..|..+.
T Consensus 223 ~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~ 258 (365)
T TIGR02928 223 DGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREG 258 (365)
T ss_pred hhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Confidence 5555555443 445 34555668888887776553
No 224
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.40 E-value=1.3e-12 Score=155.76 Aligned_cols=261 Identities=20% Similarity=0.276 Sum_probs=162.9
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccc-
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV- 850 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~v- 850 (1086)
.+++|.....+.+.+.+... ......++|+|++||||+++|+++.... +.+|+.++|..+....+
T Consensus 139 ~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~ 207 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE 207 (445)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH
Confidence 45666666666666555421 1234569999999999999999997764 57999999987632111
Q ss_pred ----c----ccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCC
Q 001395 851 ----G----ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVN 913 (1086)
Q Consensus 851 ----G----ese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~ 913 (1086)
| ......+...........++||||||+.| +..++..|+..|+... ...+
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (445)
T TIGR02915 208 SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-------------PLNLQAKLLRFLQERVIERLGGREEIPVD 274 (445)
T ss_pred HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-------------CHHHHHHHHHHHhhCeEEeCCCCceeeec
Confidence 1 10000000000111234569999999965 6788999999986432 1136
Q ss_pred EEEEEecCCCCC-------CChhhhCCCCcceEeecCCCCHHHHHH----HHHHHHhcC----CCC-Cccc---HHHHHH
Q 001395 914 VTVIAATNRPDK-------IDPALLRPGRFDRLLYVGPPNETDREE----IFRIHLRKI----PCS-SDVN---IRELAC 974 (1086)
Q Consensus 914 v~VI~aTN~p~~-------lD~aLlrpgRFd~~I~~~~P~~~eR~~----Il~~~l~~~----~l~-~d~~---l~~La~ 974 (1086)
+.||++|+..-. +.+.|.. |+. .+.+..|...+|.+ +++.+++.+ +.. .... +..|..
T Consensus 275 ~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 275 VRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 899999987632 2333332 332 45567788888865 444454332 211 1222 333333
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh--hCCCchhHHHHHHHHHHHHHhccccccccccccccc
Q 001395 975 LSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH--VQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPS 1052 (1086)
Q Consensus 975 ~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1086)
..=--+.++|++++++|+..+ ....|+.+|+...... ..+.. ..+....+.+++.++..+...+.++...++
T Consensus 352 ~~wpgNvreL~~~i~~a~~~~-----~~~~i~~~~l~~~~~~~~~~~~~-~~l~~~~~~~E~~~i~~al~~~~gn~~~aA 425 (445)
T TIGR02915 352 HAWPGNVRELENKVKRAVIMA-----EGNQITAEDLGLDARERAETPLE-VNLREVRERAEREAVRKAIARVDGNIARAA 425 (445)
T ss_pred CCCCChHHHHHHHHHHHHHhC-----CCCcccHHHcCCccccccccccc-cCHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 331224599999999988755 3446777776411000 01111 124344567899999999999999999999
Q ss_pred cccchh---HHHHHhhceE
Q 001395 1053 KSIGSN---MWTLIKSISL 1068 (1086)
Q Consensus 1053 ~~~g~~---L~~~~k~~~~ 1068 (1086)
+.+|+. ||++||++|+
T Consensus 426 ~~Lgisr~tl~rkl~~~~i 444 (445)
T TIGR02915 426 ELLGITRPTLYDLMKKHGI 444 (445)
T ss_pred HHhCCCHHHHHHHHHHhCC
Confidence 999999 9999999986
No 225
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=1.6e-11 Score=144.06 Aligned_cols=201 Identities=16% Similarity=0.201 Sum_probs=131.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccc--
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQ-- 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~-- 483 (1086)
+.+.|-+++++.|...+... .. + ..+.+++|+||||||||++++.+++++ +..++.++|....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~-~~------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPA-LR------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHH-hC------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 56889999999999888654 11 1 235679999999999999999999876 567899998654321
Q ss_pred --------c-------ch-hhHHHHHHHHHHhhc-CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCC
Q 001395 484 --------N-------YG-ESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 546 (1086)
Q Consensus 484 --------~-------~G-ese~~l~~vf~~a~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~ 546 (1086)
. .| ..+..+..+.+.... ..+.||+|||+|.+.... ....+..|+..++... ..+
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~-~~~ 173 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP-GAR 173 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC-CCe
Confidence 1 11 112233333333332 356799999999996211 1234556666555442 236
Q ss_pred eeEEeccCCCC---CCCccccCCCCcc-eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC--ccccchHHHHHH
Q 001395 547 VLVIAATNRPD---SIEPALRRPGRLD-REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM--EHSLLDSEVEYL 620 (1086)
Q Consensus 547 viVIatTN~~d---~idpaL~r~GRfd-r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~--~~~l~d~~l~~L 620 (1086)
+.+|+++|..+ .+++.+++ ||. ..|.+ ++++.++..+|++..++.. ...+++..++.+
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f--------------~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 237 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKS--VFRPEEIYF--------------PPYTADEIFDILKDRVEEGFYPGVVDDEVLDLI 237 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHh--cCCcceeec--------------CCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHH
Confidence 88899988764 45666655 553 34555 9999999999999887542 224567778888
Q ss_pred HHHcCCC--cHHHHHHHHHHHHHHH
Q 001395 621 SMATHGF--VGADLAALCNEAALVC 643 (1086)
Q Consensus 621 a~~t~Gf--sgaDL~~L~~eA~~~a 643 (1086)
++.+.+. ..+.+..+|..|+..|
T Consensus 238 ~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 238 ADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 8877442 2334445666665544
No 226
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.40 E-value=4.6e-12 Score=136.90 Aligned_cols=184 Identities=23% Similarity=0.334 Sum_probs=124.3
Q ss_pred CCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHH
Q 001395 414 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQ 490 (1086)
Q Consensus 414 ~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~ 490 (1086)
++.+..++.+++++.. ..+.+++|+||+|||||++|+++++.+ +.+++.+++.++....
T Consensus 20 ~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------ 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------ 81 (226)
T ss_pred CCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------
Confidence 3566677777776531 346789999999999999999999876 4678889887775321
Q ss_pred HHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC---ccccCCC
Q 001395 491 ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE---PALRRPG 567 (1086)
Q Consensus 491 ~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id---paL~r~G 567 (1086)
..+++.... ..+|+|||+|.+... ......|..+++.....+..+|+.++..+..++ +.+.+
T Consensus 82 --~~~~~~~~~--~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~-- 146 (226)
T TIGR03420 82 --PEVLEGLEQ--ADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT-- 146 (226)
T ss_pred --HHHHhhccc--CCEEEEeChhhhcCC---------hHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--
Confidence 233333322 359999999988421 111345555555543333444444443443332 55655
Q ss_pred Ccc--eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 568 RLD--REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 568 Rfd--r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~r 645 (1086)
|+. ..+.+ ++|+.+++..+++.+..+.+..+++..++.|+.. .+-+.+++.++++++...+.+
T Consensus 147 r~~~~~~i~l--------------~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 147 RLAWGLVFQL--------------PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHhcCeeEec--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 543 45555 9999999999999888777777889999999996 555889999998887654433
No 227
>PRK15115 response regulator GlrR; Provisional
Probab=99.39 E-value=1.3e-12 Score=155.58 Aligned_cols=233 Identities=18% Similarity=0.267 Sum_probs=155.0
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHHHHHHHHHH---------------HHhcCCe
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAK---------------ARANAPS 870 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~~ir~lf~~---------------A~~~~p~ 870 (1086)
...++|+|++|||||++|+++.... +.+|+.++|..+-.... -..+|.. .......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3459999999999999999997764 58999999987532111 1112211 1123345
Q ss_pred EEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc---------CCCEEEEEecCCCCCCChhhhCCCCcce---
Q 001395 871 IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------RVNVTVIAATNRPDKIDPALLRPGRFDR--- 938 (1086)
Q Consensus 871 ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~---------~~~v~VI~aTN~p~~lD~aLlrpgRFd~--- 938 (1086)
+|||||||.| ....+..|+..|+...- ..++.+|++|+.+ +. .++..|+|..
T Consensus 231 tl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~-~~~~~~~f~~~l~ 294 (444)
T PRK15115 231 TLFLDEIGDM-------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LP-KAMARGEFREDLY 294 (444)
T ss_pred EEEEEccccC-------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HH-HHHHcCCccHHHH
Confidence 9999999965 56788889998864321 2368999999864 33 3333466632
Q ss_pred ----EeecCCCCHHHHHH----HHHHHHhcC----CC----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCC
Q 001395 939 ----LLYVGPPNETDREE----IFRIHLRKI----PC----SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 1002 (1086)
Q Consensus 939 ----~I~~~~P~~~eR~~----Il~~~l~~~----~l----~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~ 1002 (1086)
.+.+..|...+|.+ +++.+++.. .. ..+.-+..|....=.-+.++++++++.|+..+ +.
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~-----~~ 369 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT-----SS 369 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC-----CC
Confidence 45567788888854 445555432 11 12222444444431225699999999887654 34
Q ss_pred CCCCHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccccccccccccchh---HHHHHhhceEe
Q 001395 1003 SRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN---MWTLIKSISLF 1069 (1086)
Q Consensus 1003 ~~It~~d~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~~ 1069 (1086)
..|+.+++...+..- +.....+....+.+|+.++..+...+.|++.++++.+|++ ||+|||++|+.
T Consensus 370 ~~i~~~~l~~~~~~~-~~~~~~~~~~~~~~E~~~i~~al~~~~gn~~~aA~~Lgisr~tL~rkl~~~~~~ 438 (444)
T PRK15115 370 PVISDALVEQALEGE-NTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 (444)
T ss_pred CccChhhhhhhhccc-ccccccHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 568888876554311 1111123333477899999999999999999999999999 99999999986
No 228
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.39 E-value=7.7e-13 Score=158.77 Aligned_cols=257 Identities=20% Similarity=0.283 Sum_probs=165.9
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccc
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV 850 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~v 850 (1086)
+.+++|.....+.+.+.+... ......+++.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 456777777766666555421 1234569999999999999999998765 5799999998762211
Q ss_pred cccHHHHHHHHHH---------------HHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc------
Q 001395 851 GESEKAVRSLFAK---------------ARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 909 (1086)
Q Consensus 851 Gese~~ir~lf~~---------------A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~------ 909 (1086)
.-..+|.. ......+.||||||+.| ....+.+|+..|+...
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-------------PLDVQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-------------CHHHHHHHHHHHhcCcEEeCCC
Confidence 11112211 11233459999999965 5678889999886432
Q ss_pred ---cCCCEEEEEecCCCC-------CCChhhhCCCCcceEeecCCCCHHHHHH----HHHHHHhcC----CCC-Cccc--
Q 001395 910 ---QRVNVTVIAATNRPD-------KIDPALLRPGRFDRLLYVGPPNETDREE----IFRIHLRKI----PCS-SDVN-- 968 (1086)
Q Consensus 910 ---~~~~v~VI~aTN~p~-------~lD~aLlrpgRFd~~I~~~~P~~~eR~~----Il~~~l~~~----~l~-~d~~-- 968 (1086)
...++.||++|+..- .+.+.|.. ||. .+.+..|...+|.+ +++++++.. ... ....
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 343 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE 343 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 123679999998652 23344444 442 35566677777655 555555432 211 1122
Q ss_pred -HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC---------CC-----------------c
Q 001395 969 -IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ---------PS-----------------E 1021 (1086)
Q Consensus 969 -l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~---------p~-----------------~ 1021 (1086)
+..|....=--+.++|++++++++..+ +...|+.+|+...+.... +. .
T Consensus 344 a~~~L~~~~wpgNv~eL~~~i~~~~~~~-----~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (469)
T PRK10923 344 TEAALTRLAWPGNVRQLENTCRWLTVMA-----AGQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSGH 418 (469)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC-----CCCcccHHHCcHhhhcccccccccccccccccccccccccccccccc
Confidence 333333221223599999999988765 345677777754432110 00 0
Q ss_pred hhHHHHHHHHHHHHHhccccccccccccccccccchh---HHHHHhhceE
Q 001395 1022 IHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN---MWTLIKSISL 1068 (1086)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~ 1068 (1086)
...+....+.+|+.++..+...+.|+...+++.+|++ ||+|||++|+
T Consensus 419 ~~~l~~~l~~~E~~~i~~aL~~~~gn~~~aA~~Lgisr~tL~rkl~~~~i 468 (469)
T PRK10923 419 QNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468 (469)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 1134445678999999999999999999999999999 9999999986
No 229
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=5.7e-12 Score=151.73 Aligned_cols=184 Identities=18% Similarity=0.273 Sum_probs=134.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++++|.+.+++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45689999999999998877543 23467999999999999999999998743
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.++.+++... .| -..++.+.+.+.. ....|++|||+|.+- ....+.|+..|+
T Consensus 82 i~~~~h~DiieIdaas~----ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLKtLE 144 (605)
T PRK05896 82 INTNQSVDIVELDAASN----NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLKTLE 144 (605)
T ss_pred HHcCCCCceEEeccccc----cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHHHHH
Confidence 2344443221 11 1234555443322 234699999999883 235578888888
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+++|++|+.+..+.+++++ |+. .+.+ +.++..+....++..+...+..+++..++.
T Consensus 145 EP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF--------------~~Ls~~eL~~~L~~il~kegi~Is~eal~~ 205 (605)
T PRK05896 145 EP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNF--------------KKLNNSELQELLKSIAKKEKIKIEDNAIDK 205 (605)
T ss_pred hC--CCcEEEEEECCChHhhhHHHHh--hhh-hccc--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 73 4578888888888999888888 664 4555 899999999999998887777788888999
Q ss_pred HHHHcCCCcHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA 639 (1086)
++..+.| +.+++.+++..+
T Consensus 206 La~lS~G-dlR~AlnlLekL 224 (605)
T PRK05896 206 IADLADG-SLRDGLSILDQL 224 (605)
T ss_pred HHHHcCC-cHHHHHHHHHHH
Confidence 9998877 555655555543
No 230
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=7.5e-12 Score=145.93 Aligned_cols=234 Identities=17% Similarity=0.251 Sum_probs=151.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhh--hc----CC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc-
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLS--SL----GL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS- 482 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~--~l----gi-~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s- 482 (1086)
+.|+|+++.++.+...+... ++.... .. ++ ....++||+||||||||++|+++|+.++.+|..+++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h-~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~ 155 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNH-YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA 155 (413)
T ss_pred ceecCHHHHHHHHHHHHHHH-HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccc
Confidence 45899999999998877443 222111 00 11 12468999999999999999999999999999999888753
Q ss_pred ccchhh-HHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCC--ch-hHHHHHHHHHHHhhcccc-----------
Q 001395 483 QNYGES-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG--EE-LSQRMVATLLNLMDGVCR----------- 543 (1086)
Q Consensus 483 ~~~Ges-e~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~--~~-~~~rv~~~Ll~lLd~l~~----------- 543 (1086)
.|+|+. +..+..+++.+ ....++||||||+|.+.++++..+ .+ ....++..|+++|++...
T Consensus 156 gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~ 235 (413)
T TIGR00382 156 GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHP 235 (413)
T ss_pred ccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcccc
Confidence 577874 44455555432 234577999999999987543221 11 123578889999976421
Q ss_pred CCCeeEEeccCCCCC-------CCccccC-CC----Ccc-----------e-----------eeehhhhhhhhhcccCCC
Q 001395 544 TDGVLVIAATNRPDS-------IEPALRR-PG----RLD-----------R-----------EIEIDMSFLFSLLKNSPA 589 (1086)
Q Consensus 544 ~~~viVIatTN~~d~-------idpaL~r-~G----Rfd-----------r-----------~I~i~l~~~~~~~~~v~~ 589 (1086)
..+.++|.|+|-..- ++..+.+ -+ -|. . ...+.++|+.++-..+++
T Consensus 236 ~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f 315 (413)
T TIGR00382 236 YQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATL 315 (413)
T ss_pred CCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeec
Confidence 134678888886211 0000000 00 010 0 011345677777777788
Q ss_pred CCCCHHHHHHHHHHH----Hc---------cCccccchHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHH
Q 001395 590 AVPSPAQRLEILHAL----LS---------GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 590 ~~Pd~~eR~~IL~~~----l~---------~~~~~l~d~~l~~La~~--t~GfsgaDL~~L~~eA~~~a~r 645 (1086)
.+.+.++..+|+... ++ +..+.+++..++.+++. ...+..+.|+.+++...+..+-
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 999999999998762 22 22334678888999986 4567788888888777655544
No 231
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.39 E-value=2.3e-12 Score=151.94 Aligned_cols=173 Identities=17% Similarity=0.274 Sum_probs=122.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHH-HHHHHHHHhhcCCCeEEEEccchhhc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIA 516 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~-~l~~vf~~a~~~~P~ILfIDEiD~l~ 516 (1086)
...+++||||+|+|||+|++++++++ +..++.+++.++...+...... .+..+.+... .+.+|+|||+|.+.
T Consensus 135 ~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 135 AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLA 212 (405)
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhc
Confidence 34579999999999999999999887 5678899988776554332211 1122222222 35699999999885
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCC---CCccccCCCCcce--eeehhhhhhhhhcccCCCCC
Q 001395 517 PARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLDR--EIEIDMSFLFSLLKNSPAAV 591 (1086)
Q Consensus 517 ~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~---idpaL~r~GRfdr--~I~i~l~~~~~~~~~v~~~~ 591 (1086)
++. .....|+..++.+...+..+||++...|.. +++.+++ ||.. .+.+ ++
T Consensus 213 ~~~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i--------------~~ 267 (405)
T TIGR00362 213 GKE---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDI--------------EP 267 (405)
T ss_pred CCH---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEe--------------CC
Confidence 321 223456666666555555566666555554 5577887 8875 3455 99
Q ss_pred CCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 592 PSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 592 Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
|+.++|.+|++..+...+..+++..++.++.+..+ +.+++..++......+
T Consensus 268 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 268 PDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999988888899999999988766 5677777666555444
No 232
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=1.6e-12 Score=155.14 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=123.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHH-HHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~-~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
..+++||||||||||+|++++++++ +..++.+++.++...+...... ....+.+... .+.+|+|||+|.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcC
Confidence 4579999999999999999999987 5668899988876654433221 1122222222 467999999999853
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCC---CCccccCCCCcce--eeehhhhhhhhhcccCCCCCC
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLDR--EIEIDMSFLFSLLKNSPAAVP 592 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~---idpaL~r~GRfdr--~I~i~l~~~~~~~~~v~~~~P 592 (1086)
+. .....|+.+++.+...+..+||++...|.. +++.+++ ||.. .+++ ..|
T Consensus 226 ~~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i--------------~~p 280 (450)
T PRK00149 226 KE---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDI--------------EPP 280 (450)
T ss_pred CH---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEe--------------cCC
Confidence 21 233566777766655555566666666655 6688887 8865 4555 999
Q ss_pred CHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 593 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 593 d~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+.++|.+|++..+...+..+++..++.++.+..| +.+++..++......+
T Consensus 281 d~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 281 DLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 9999999999999887888899999999998876 5667666666554444
No 233
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.39 E-value=1.4e-11 Score=149.80 Aligned_cols=218 Identities=19% Similarity=0.198 Sum_probs=142.1
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCC-cceeCCCCCcchHHHHHHHHHh----------CCcEEEEeC
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTG-ILMFGPPGCSKTLMARAVASEA----------GLNFLAVKG 842 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~g-vLL~GPpGTGKTtLAkalA~~~----------~~~fi~v~~ 842 (1086)
-+.|.|.++-.++|..++.-.+. + ..+.+ ++|+|+||||||++++.+..++ ...++.|+|
T Consensus 754 PD~LPhREeEIeeLasfL~paIk--------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK--------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh--------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 37789999999998888764321 1 22334 5699999999999999997664 256789999
Q ss_pred Ccccccc----------------cc-ccHHHHHHHHHHHH--hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHH
Q 001395 843 PELFSKW----------------VG-ESEKAVRSLFAKAR--ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 903 (1086)
Q Consensus 843 sel~~~~----------------vG-ese~~ir~lf~~A~--~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~ 903 (1086)
..+...+ .| .....+..+|.... .....||+|||||.|... ...++-.|+.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK----------~QDVLYnLFR 894 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK----------TQKVLFTLFD 894 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------HHHHHHHHHH
Confidence 5532211 01 12234556666542 233569999999998532 1234444444
Q ss_pred HHhccccCCCEEEEEecCCC---CCCChhhhCCCCcce-EeecCCCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHcCC
Q 001395 904 ELDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRKIP-CSSDVNIRELACLSEG 978 (1086)
Q Consensus 904 ~Ld~~~~~~~v~VI~aTN~p---~~lD~aLlrpgRFd~-~I~~~~P~~~eR~~Il~~~l~~~~-l~~d~~l~~La~~t~g 978 (1086)
... .....+.||+++|.. +.+++.+.+ ||.. .|.|++++.+++.+||+..++... ...+..++.+|+....
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 432 234578999999974 456788877 6643 578899999999999999988642 2234446666664432
Q ss_pred C--cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 001395 979 C--TGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 979 ~--sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p 1019 (1086)
. ..|..-.+|+.|+.. .....|+.+|+.+|+..+..
T Consensus 971 ~SGDARKALDILRrAgEi-----kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN-----KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh-----cCCCccCHHHHHHHHHHHHh
Confidence 2 334444555555543 13457999999999877643
No 234
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=4.4e-12 Score=150.31 Aligned_cols=194 Identities=15% Similarity=0.235 Sum_probs=130.8
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcC
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 885 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~ 885 (1086)
..+++||||+|+|||+|++++++++ +..++.++..++...+...........|.... ...++|+|||++.+.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k-- 217 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK-- 217 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC--
Confidence 3569999999999999999999875 68888888876654433221111112343332 34569999999987432
Q ss_pred CCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC---CCChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhc
Q 001395 886 KESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRK 960 (1086)
Q Consensus 886 ~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~---~lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~ 960 (1086)
...+..++..++.+......+|+.+++.|. .+++.+.+ ||. .++.+.+|+.++|..|++..++.
T Consensus 218 ---------~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 218 ---------GATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ---------hhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 223444555554443333444444444443 46788988 995 78999999999999999999987
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 961 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 961 ~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
.++. .+.-++.|+....+ +.+++.++++..+.......+....|+.+..+++++.+
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 7654 33346667777665 67788888777754333334455679999999998865
No 235
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=7.8e-12 Score=153.25 Aligned_cols=184 Identities=20% Similarity=0.315 Sum_probs=136.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE---------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL--------------- 472 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~--------------- 472 (1086)
..|++|+|++.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+.+.-
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~ 83 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENV 83 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhh
Confidence 45789999999999999988654 2345689999999999999999999875521
Q ss_pred ------EEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc
Q 001395 473 ------FTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC 542 (1086)
Q Consensus 473 ------i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~ 542 (1086)
+.+++.. . .....++.+.+.+.. ....|++|||+|.+. ......|+..|+..
T Consensus 84 ~~~~Dvieidaas----n--~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLEEP- 145 (725)
T PRK07133 84 NNSLDIIEMDAAS----N--NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLEEP- 145 (725)
T ss_pred cCCCcEEEEeccc----c--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhhcC-
Confidence 1111100 0 112336666665442 345699999999883 34677888888873
Q ss_pred cCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHH
Q 001395 543 RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSM 622 (1086)
Q Consensus 543 ~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~ 622 (1086)
.+.+++|++|+.++.+.+.+++ |+. .+.+ ..++.++..++|+..+...+...++..++.++.
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF--------------~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~ 207 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNF--------------RRISEDEIVSRLEFILEKENISYEKNALKLIAK 207 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEc--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4578888888899999999988 774 5666 889999999999988887777778888899998
Q ss_pred HcCCCcHHHHHHHHHHH
Q 001395 623 ATHGFVGADLAALCNEA 639 (1086)
Q Consensus 623 ~t~GfsgaDL~~L~~eA 639 (1086)
.+.| +.+++..++..+
T Consensus 208 lS~G-slR~AlslLekl 223 (725)
T PRK07133 208 LSSG-SLRDALSIAEQV 223 (725)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 8876 456665555544
No 236
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.38 E-value=7.3e-12 Score=144.71 Aligned_cols=185 Identities=23% Similarity=0.342 Sum_probs=134.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++++|.+..++.|++.+... ..+..+|||||||+|||++|+++|+.+..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~ 79 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKE 79 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 45689999999999999877543 23456899999999999999999988743
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.++.+++.+. .....++.+++.+.. ....|++|||+|.+. ....+.|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~~le 142 (355)
T TIGR02397 80 INSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLKTLE 142 (355)
T ss_pred HhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHHHHh
Confidence 2344443211 122345666665432 234699999998883 234567888886
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. ...+++|++|+.++.+.+++++ |+. .+++ +.|+.++..++++..+++.+..+++..+..
T Consensus 143 ~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~--------------~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~ 203 (355)
T TIGR02397 143 EP--PEHVVFILATTEPHKIPATILS--RCQ-RFDF--------------KRIPLEDIVERLKKILDKEGIKIEDEALEL 203 (355)
T ss_pred CC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEc--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 63 3567788888888888888887 763 5666 889999999999999988887788888999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
++..+.| ..+.+.+.+..+.
T Consensus 204 l~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 204 IARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred HHHHcCC-ChHHHHHHHHHHH
Confidence 9988876 5555555554443
No 237
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=7.9e-12 Score=152.84 Aligned_cols=185 Identities=20% Similarity=0.279 Sum_probs=137.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 56789999999999999988654 235568999999999999999999987542
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++++++.+- ..-..++++.+.+.. ....|+||||+|.+. ....+.|+..|+
T Consensus 82 i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk~LE 144 (576)
T PRK14965 82 ITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLKTLE 144 (576)
T ss_pred HhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHHHHH
Confidence 344443321 112235555554432 234699999999883 345678999998
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.++||++|+.++.|.+.+++ |+. .+++ ..++.++....+...+.+.+..+++..+..
T Consensus 145 ep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f--------------~~l~~~~i~~~L~~i~~~egi~i~~~al~~ 205 (576)
T PRK14965 145 EP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDF--------------RRIPLQKIVDRLRYIADQEGISISDAALAL 205 (576)
T ss_pred cC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhc--------------CCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 73 4578888899999999998887 653 4444 888999999899888888888888999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
+++.+.| +.+++.++++.+.
T Consensus 206 la~~a~G-~lr~al~~Ldqli 225 (576)
T PRK14965 206 VARKGDG-SMRDSLSTLDQVL 225 (576)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9998887 5566666555443
No 238
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.37 E-value=1e-11 Score=137.86 Aligned_cols=133 Identities=21% Similarity=0.286 Sum_probs=97.2
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc------cccccccccHHHHHH--------------------HHH
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE------LFSKWVGESEKAVRS--------------------LFA 862 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se------l~~~~vGese~~ir~--------------------lf~ 862 (1086)
...++|+||||||||++|+++|...+.+++.+++.. +++.|.|.....+.. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 456999999999999999999999999999998753 444444322221111 111
Q ss_pred HHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------------cCCCEEEEEecCCCC----
Q 001395 863 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------------QRVNVTVIAATNRPD---- 924 (1086)
Q Consensus 863 ~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------------~~~~v~VI~aTN~p~---- 924 (1086)
.|.. .+.+|+||||+.+ ...+++.|+..|+... ...+..||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 2359999999954 5678888888886421 113678999999763
Q ss_pred -CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHH
Q 001395 925 -KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 925 -~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l 958 (1086)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46899999 98 578999999999999998875
No 239
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.37 E-value=3.4e-11 Score=133.18 Aligned_cols=130 Identities=25% Similarity=0.311 Sum_probs=96.2
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC------------CCCCChhhhCCCCc
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR------------PDKIDPALLRPGRF 936 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~------------p~~lD~aLlrpgRF 936 (1086)
|.||||||+|.| +-+...-|-+.|+.- --=+||+|||+ |+-|+..|+. |+
T Consensus 292 pGVLFIDEvHmL-------------DIE~FsFlnrAlEse---~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl 353 (450)
T COG1224 292 PGVLFIDEVHML-------------DIECFSFLNRALESE---LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL 353 (450)
T ss_pred cceEEEechhhh-------------hHHHHHHHHHHhhcc---cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he
Confidence 889999999966 334555555566532 23378889986 5667888887 75
Q ss_pred ceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 937 DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 937 d~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+|...+++.++..+|+++..+...+. .+..++.|+.....-+-|---+++.-|.+.|.+++ ...|..+|++.+..
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--~~~V~~~dVe~a~~ 430 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--SKRVEVEDVERAKE 430 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC--CCeeehhHHHHHHH
Confidence 477888999999999999998776655 44558888888777666766777777778887775 56799999998866
Q ss_pred hhCC
Q 001395 1016 HVQP 1019 (1086)
Q Consensus 1016 ~~~p 1019 (1086)
-+..
T Consensus 431 lF~D 434 (450)
T COG1224 431 LFLD 434 (450)
T ss_pred HHhh
Confidence 5443
No 240
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=1.8e-11 Score=147.63 Aligned_cols=191 Identities=16% Similarity=0.253 Sum_probs=135.0
Q ss_pred CCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhc
Q 001395 810 TGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 884 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r 884 (1086)
..++|||++|||||+|+++||+++ +..++++++.+++..++........+.|.... ..+++|+||||+.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC-
Confidence 349999999999999999999875 57889999988876655433222222343322 24579999999987432
Q ss_pred CCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC----CCCChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHH
Q 001395 885 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP----DKIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 885 ~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p----~~lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l 958 (1086)
...+..|+..++.+...... ||+++|.+ ..+++.|.+ ||. .++.+..|+.+.|..||+.++
T Consensus 393 ----------e~tqeeLF~l~N~l~e~gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 393 ----------ESTQEEFFHTFNTLHNANKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ----------HHHHHHHHHHHHHHHhcCCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 23345555555555444333 44566654 346888988 885 578999999999999999999
Q ss_pred hcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 001395 959 RKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 959 ~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p 1019 (1086)
+..++. .+.-++.|+....+ +.++|+.++.+....+... ...|+.+..+..++.+.+
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~---~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN---RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhhc
Confidence 877665 33447778877765 6889999888776655443 356898888888876643
No 241
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.2e-11 Score=150.19 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=137.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------------- 471 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~--------------- 471 (1086)
...|++|+|++.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 346789999999999999988654 234569999999999999999999988542
Q ss_pred ---------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHh
Q 001395 472 ---------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 538 (1086)
Q Consensus 472 ---------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lL 538 (1086)
++.+++..- ..-..++.+.+.+. .....|+||||+|.+. ....+.|+..|
T Consensus 81 ~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK~L 143 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLKTI 143 (563)
T ss_pred HHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHHhh
Confidence 333333210 11123444443322 2345699999999882 34567788888
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
+. ....+++|++|+.+..+.+++++ |+. .+++ ..++.++..++++..+...+..+++..+.
T Consensus 144 Ee--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f--------------~~l~~~el~~~L~~i~~~egi~id~eAl~ 204 (563)
T PRK06647 144 EE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNF--------------RLLSLEKIYNMLKKVCLEDQIKYEDEALK 204 (563)
T ss_pred cc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEe--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 76 34678888888888889889988 764 4566 78899999999999888888888899999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHH
Q 001395 619 YLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
.++....| +.+++..++..+.
T Consensus 205 lLa~~s~G-dlR~alslLdkli 225 (563)
T PRK06647 205 WIAYKSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH
Confidence 99998877 6667766665543
No 242
>PRK06893 DNA replication initiation factor; Validated
Probab=99.36 E-value=8.3e-12 Score=135.96 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=107.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD 521 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~ 521 (1086)
..++||||||||||+|++++|+++ +.....++..+. ......+++... ...+|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 457999999999999999999886 334444443221 111123343333 34699999999885321
Q ss_pred CCchhHHHHHHHHHHHhhccccCCCee-EEeccCCCCCCC---ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHH
Q 001395 522 GGEELSQRMVATLLNLMDGVCRTDGVL-VIAATNRPDSIE---PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQR 597 (1086)
Q Consensus 522 ~~~~~~~rv~~~Ll~lLd~l~~~~~vi-VIatTN~~d~id---paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR 597 (1086)
.....|+.+++.....+..+ +++++..|..++ +.++++.++...+.+ +.|+.++|
T Consensus 108 -------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l--------------~~pd~e~~ 166 (229)
T PRK06893 108 -------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL--------------NDLTDEQK 166 (229)
T ss_pred -------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC--------------CCCCHHHH
Confidence 12235666676665555444 455555666654 788883333445555 99999999
Q ss_pred HHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHH
Q 001395 598 LEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 638 (1086)
Q Consensus 598 ~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~e 638 (1086)
.+|++..+...+..++++.++.|+++..| ..+.+..++..
T Consensus 167 ~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 206 (229)
T PRK06893 167 IIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDL 206 (229)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 99999998877888899999999998876 44555554443
No 243
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.5e-11 Score=147.30 Aligned_cols=185 Identities=23% Similarity=0.327 Sum_probs=132.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++++|++..++.|+..+... ..+..+|||||+|+|||++|+.+|+.+++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 45689999999999999888654 124458899999999999999999987631
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.++++. ..| -..++.+.+.+. .....|++|||+|.+. ....+.|+..|+
T Consensus 82 i~~g~~~d~~eidaas----~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~LE 144 (486)
T PRK14953 82 IDKGSFPDLIEIDAAS----NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLKTLE 144 (486)
T ss_pred HhcCCCCcEEEEeCcc----CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHHHHh
Confidence 22222211 011 122344444332 2345799999999883 344567888887
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. .+.+++|.+|+.++.+.+++++ |+. .+.+ .+|+.++...+++..++..+..+++..+..
T Consensus 145 ep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f--------------~~ls~~el~~~L~~i~k~egi~id~~al~~ 205 (486)
T PRK14953 145 EP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIF--------------SKPTKEQIKEYLKRICNEEKIEYEEKALDL 205 (486)
T ss_pred cC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEc--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 63 4467777778888888888887 664 4566 889999999999999988888888889999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
++..+.| +.+++.++++.+.
T Consensus 206 La~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 206 LAQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9988776 4566666665554
No 244
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.34 E-value=1.2e-11 Score=153.63 Aligned_cols=181 Identities=23% Similarity=0.316 Sum_probs=125.8
Q ss_pred ccccccCCcHHHHH---HHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 408 QDISKLGGLSKEYA---ILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~---~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
..+++++|.+..+. .++.++... ...+++|||||||||||+|+++|+.++.+|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~------------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~---- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKAD------------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA---- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh----
Confidence 45678999998885 455554322 23479999999999999999999999999998887531
Q ss_pred chhhHHHHHHHHHHh-----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC--CC
Q 001395 485 YGESEQALHEVFDSA-----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR--PD 557 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a-----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~--~d 557 (1086)
+ ...++.+++.+ ......||||||+|.+. ......|+..++ .+.+++|++|+. ..
T Consensus 89 -~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE----~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 89 -G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVE----NGTITLIGATTENPYF 150 (725)
T ss_pred -h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhc----CceEEEEEecCCChHh
Confidence 1 11223333332 11345699999999883 223445666554 356778876643 34
Q ss_pred CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHc-------cCccccchHHHHHHHHHcCCCcHH
Q 001395 558 SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLS-------GMEHSLLDSEVEYLSMATHGFVGA 630 (1086)
Q Consensus 558 ~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~-------~~~~~l~d~~l~~La~~t~Gfsga 630 (1086)
.+++++++ |. ..+.+ ++++.+++..|++..+. ..+..+++..++.|+....| ..+
T Consensus 151 ~l~~aL~S--R~-~v~~l--------------~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R 212 (725)
T PRK13341 151 EVNKALVS--RS-RLFRL--------------KSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DAR 212 (725)
T ss_pred hhhhHhhc--cc-cceec--------------CCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHH
Confidence 67888887 54 34555 99999999999999887 34456788899999998855 556
Q ss_pred HHHHHHHHHH
Q 001395 631 DLAALCNEAA 640 (1086)
Q Consensus 631 DL~~L~~eA~ 640 (1086)
.+.++++.+.
T Consensus 213 ~lln~Le~a~ 222 (725)
T PRK13341 213 SLLNALELAV 222 (725)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 245
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=2.6e-12 Score=147.70 Aligned_cols=271 Identities=19% Similarity=0.227 Sum_probs=163.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH----hCCcEEEEeCCccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKGPELF 846 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~----~~~~fi~v~~sel~ 846 (1086)
...+++++|.+...+++++.+... .+....||++|++||||+++|++|... .+.|||.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 346788999999888888887641 233456999999999999999999533 47899999997652
Q ss_pred ---------ccccccc---HHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-----
Q 001395 847 ---------SKWVGES---EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----- 909 (1086)
Q Consensus 847 ---------~~~vGes---e~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~----- 909 (1086)
+.-.|.. ...-..+|+.|-.+ +||+|||+.+ ....+..|++.||...
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L-------------P~~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL-------------PPEGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC-------------CHhHHHHHHHHHHcCceEecC
Confidence 2222221 22234456665544 9999999965 6788999999998632
Q ss_pred ----cCCCEEEEEecCCCCCCChhhhC-CCCcc--eEeecCCCCHHHHHH----HHHHHH----hcCCCCCcccHHHHHH
Q 001395 910 ----QRVNVTVIAATNRPDKIDPALLR-PGRFD--RLLYVGPPNETDREE----IFRIHL----RKIPCSSDVNIRELAC 974 (1086)
Q Consensus 910 ----~~~~v~VI~aTN~p~~lD~aLlr-pgRFd--~~I~~~~P~~~eR~~----Il~~~l----~~~~l~~d~~l~~La~ 974 (1086)
...+|.+|+|||.. ++.+++. ..-++ -.+.+..|+.++|.. ++++++ ++.......+..+..+
T Consensus 207 ~~~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 207 GSQPRPVDVRLICATTED--LEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCcCCCceeeeccccC--HHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 23579999999843 3333332 01111 144566788887744 334443 4444442222222222
Q ss_pred HcCCC----cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC--C-------CchhHH----HHHHHHHHHHHh
Q 001395 975 LSEGC----TGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ--P-------SEIHSY----KELSAKFQRLVH 1037 (1086)
Q Consensus 975 ~t~g~----sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~--p-------~~~~~~----~~~~~~~~~~~~ 1037 (1086)
....| +.++++++++.++..+-........+............. + ...... +...+..+....
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQASGEGQDLEDLIISIRLDELPGLNDVPAGISLQLNLPELPLSLRETSLEQVEERLL 364 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhccccCCcccccchhhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHHHHHHH
Confidence 22222 468999999999988854433211111111000000000 0 000011 122234444455
Q ss_pred ccccccccccccccccccchh---HHHHHhhceEee
Q 001395 1038 SNAEADESGYQLRPSKSIGSN---MWTLIKSISLFL 1070 (1086)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~~l 1070 (1086)
..+.....++........|.. +|.+|+++++..
T Consensus 365 ~~~l~~~~~~~~~~~~~lg~s~~~l~~~l~~~~~~~ 400 (403)
T COG1221 365 QKALEQNKGNKKKAARLLGISRKTLRYRLKKYGLTT 400 (403)
T ss_pred HHHHHHhhccHHHHHHHcCCCHHHHHHHHHHhcccc
Confidence 566667778888888888888 999999988763
No 246
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3e-11 Score=143.65 Aligned_cols=182 Identities=20% Similarity=0.290 Sum_probs=131.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|.+.+++.|+..+... ..+..+|||||||+|||++|+++|+.+.+
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 46789999999999998888654 23456899999999999999999998743
Q ss_pred --------cEEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHh
Q 001395 471 --------NLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 538 (1086)
Q Consensus 471 --------~~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lL 538 (1086)
.++.+++... .| -..++.+.+.+ ......|+||||+|.+. ....+.|+..|
T Consensus 83 ~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk~l 145 (451)
T PRK06305 83 EISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLKTL 145 (451)
T ss_pred HHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHHHh
Confidence 2344443221 11 11233322221 22456799999999883 33567888888
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
+.. .+.+++|++|+.+..+.+++++ |+. .+++ ..++.++....++..+++.+..+++..++
T Consensus 146 Eep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f--------------~~l~~~el~~~L~~~~~~eg~~i~~~al~ 206 (451)
T PRK06305 146 EEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHL--------------KRIPEETIIDKLALIAKQEGIETSREALL 206 (451)
T ss_pred hcC--CCCceEEEEeCChHhcchHHHH--hce-EEeC--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 873 4577888888888889889888 663 5666 88999999999998888777778888999
Q ss_pred HHHHHcCCCcHHHHHHHHH
Q 001395 619 YLSMATHGFVGADLAALCN 637 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~L~~ 637 (1086)
.++..+.| +.+++.++++
T Consensus 207 ~L~~~s~g-dlr~a~~~Le 224 (451)
T PRK06305 207 PIARAAQG-SLRDAESLYD 224 (451)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 99998876 4444444443
No 247
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.34 E-value=2.6e-11 Score=132.63 Aligned_cols=179 Identities=17% Similarity=0.164 Sum_probs=114.7
Q ss_pred CcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEcccccccccchhhHHH
Q 001395 415 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNYGESEQA 491 (1086)
Q Consensus 415 Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg---~~~i~I~~s~l~s~~~Gese~~ 491 (1086)
+....+..++.+.... ...+++||||||||||+|++++++++. ..+..++..+... .
T Consensus 28 ~n~~a~~~l~~~~~~~------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~ 87 (235)
T PRK08084 28 DNDSLLAALQNALRQE------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------F 87 (235)
T ss_pred ccHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------h
Confidence 3455555665554322 235799999999999999999998763 3445554433211 1
Q ss_pred HHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCe-eEEeccCCCCC---CCccccCCC
Q 001395 492 LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV-LVIAATNRPDS---IEPALRRPG 567 (1086)
Q Consensus 492 l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~v-iVIatTN~~d~---idpaL~r~G 567 (1086)
..++++.... ..+|+|||++.+..+ ......|..+++.....++. +++.+++.|.. +.|.|++
T Consensus 88 ~~~~~~~~~~--~dlliiDdi~~~~~~---------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S-- 154 (235)
T PRK08084 88 VPEVLEGMEQ--LSLVCIDNIECIAGD---------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS-- 154 (235)
T ss_pred hHHHHHHhhh--CCEEEEeChhhhcCC---------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--
Confidence 1222222222 258999999988421 22333455555555445554 44444455555 5688988
Q ss_pred CcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 568 RLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 568 Rfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
|+..-..+.+ .+|+.+++.+|++......+..++++.++.|+++..| +.+.+..++...
T Consensus 155 Rl~~g~~~~l------------~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 155 RLDWGQIYKL------------QPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HHhCCceeee------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 8763333322 9999999999999977777788899999999998887 455665555543
No 248
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=5.2e-12 Score=149.87 Aligned_cols=175 Identities=14% Similarity=0.211 Sum_probs=120.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhH-HHHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESE-QALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese-~~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
..+++||||||+|||+|++++++++ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3569999999999999999999976 457888888877655432211 11222 2222223578999999998853
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC---CccccCCCCcceeeehhhhhhhhhcccCCCCCCCH
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSP 594 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i---dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~ 594 (1086)
. ......|+..++.+...+..+||++.+.|..+ .+.+++ ||...+.++ +.+|+.
T Consensus 209 ~---------~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~------------i~~pd~ 265 (440)
T PRK14088 209 K---------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAK------------LEPPDE 265 (440)
T ss_pred c---------HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEe------------eCCCCH
Confidence 2 11234566666666555565666665666654 466777 775444432 299999
Q ss_pred HHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 595 AQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 595 ~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+.|.+|++..+...+..+++..++.|+++..| +.++|..++......+
T Consensus 266 e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 266 ETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 99999999999887888899999999998876 5566666665544333
No 249
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.6e-11 Score=148.00 Aligned_cols=189 Identities=19% Similarity=0.204 Sum_probs=138.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc-----------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN----------- 476 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~----------- 476 (1086)
..|++|+|++..++.|+..+... +.+..+||+||+|+|||++|+++|+.+++.....+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 56789999999999999988654 23567999999999999999999998865321111
Q ss_pred --c--------ccccc----ccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHh
Q 001395 477 --G--------PEVVS----QNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 538 (1086)
Q Consensus 477 --~--------s~l~s----~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lL 538 (1086)
| .+++. ... .-..++++.+.+.. ....|+||||+|.+. ....+.|+..|
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~naLLKtL 156 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHT--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAFNALLKTL 156 (598)
T ss_pred HHHHHHhcCCCCceEEecccccC--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHHHHHHHHH
Confidence 0 01110 001 12345666655432 235699999999883 34567888888
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
+.. .+.++||++|+.++.+.+.+++ |+. .+.+ ..++.++....++..+++.+..+++..++
T Consensus 157 EeP--p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f--------------~~l~~~el~~~L~~i~~kegi~i~~eAl~ 217 (598)
T PRK09111 157 EEP--PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDL--------------RRIEADVLAAHLSRIAAKEGVEVEDEALA 217 (598)
T ss_pred HhC--CCCeEEEEEeCChhhhhHHHHh--hee-EEEe--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 763 4567888888888888888887 663 5666 88999999999999998888888889999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHH
Q 001395 619 YLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
.++..+.| +.+++.++++.+.
T Consensus 218 lIa~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 218 LIARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH
Confidence 99998877 5667666665553
No 250
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.33 E-value=2.9e-11 Score=131.30 Aligned_cols=162 Identities=20% Similarity=0.243 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccC
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
....+++|+||+|||||+||+++++++ +..++.+++.++... +.. .....+|+|||+|.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~- 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD- 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc-
Confidence 456789999999999999999999875 667888887665311 111 12346999999998731
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC---CCCccccCCCCcc--eeeehhhhhhhhhcccCCCCCCC
Q 001395 519 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---SIEPALRRPGRLD--REIEIDMSFLFSLLKNSPAAVPS 593 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d---~idpaL~r~GRfd--r~I~i~l~~~~~~~~~v~~~~Pd 593 (1086)
.....|+.+++.....+..++|.+++.+. .+.+.+++ ||. ..+.+ ++|+
T Consensus 105 ----------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l--------------~pl~ 158 (227)
T PRK08903 105 ----------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYEL--------------KPLS 158 (227)
T ss_pred ----------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEe--------------cCCC
Confidence 12345666666655555544555554322 23455555 553 35555 9999
Q ss_pred HHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 594 PAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 594 ~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~r 645 (1086)
.+++..+++.+....+..+++..++.|+....| +.+++..+++.....+..
T Consensus 159 ~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~ 209 (227)
T PRK08903 159 DADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLE 209 (227)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence 999999999888877888899999999996554 778888877765544433
No 251
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.32 E-value=1.1e-12 Score=155.42 Aligned_cols=230 Identities=23% Similarity=0.325 Sum_probs=159.2
Q ss_pred CCCcceeCCCCCcchHHHHHHHHH--hCCcEEEEeCC---------ccccccccccH----HHHHHHHHHHHhcCCeEEE
Q 001395 809 PTGILMFGPPGCSKTLMARAVASE--AGLNFLAVKGP---------ELFSKWVGESE----KAVRSLFAKARANAPSIIF 873 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~--~~~~fi~v~~s---------el~~~~vGese----~~ir~lf~~A~~~~p~ILf 873 (1086)
.-.+++.|.|||||..+||++-.. ...||+.++|. ++++..-|.+. +..+..+..|.. ..||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccH
Confidence 345999999999999999999554 56899999984 34444334433 333444444444 4999
Q ss_pred EecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcc--------ccCCCEEEEEecCCCCCCChhhhCCCCcceEee----
Q 001395 874 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLY---- 941 (1086)
Q Consensus 874 lDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~--------~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~---- 941 (1086)
+|||..| ...++..||+.|... ....++.||+|||++-. +|.+.|||.+.+|
T Consensus 413 ldeIgd~-------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~ 476 (606)
T COG3284 413 LDEIGDM-------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLN 476 (606)
T ss_pred HHHhhhc-------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhc
Confidence 9999854 678899999998633 13457999999999876 8899999987544
Q ss_pred ---cCCCCHHHHHH---HHHHHHhcC-CCCCcccHHHHHHHc-CCC--cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 001395 942 ---VGPPNETDREE---IFRIHLRKI-PCSSDVNIRELACLS-EGC--TGADISLICREAAISAIEENLDASRITMQHLK 1011 (1086)
Q Consensus 942 ---~~~P~~~eR~~---Il~~~l~~~-~l~~d~~l~~La~~t-~g~--sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~ 1011 (1086)
+.+|...+|.+ +|.+++++. ...-..+-+.++... .-| +.+++.++++.++..+ +...|...|+.
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~-----~~g~~~~~dlp 551 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS-----DGGRIRVSDLP 551 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC-----CCCeeEcccCC
Confidence 45788877754 444444332 221222323333222 123 4589999999888766 45566666666
Q ss_pred HHHHhhCCCchhHHHHHHHHHHHHHhccccccccccccccccccchh---HHHHHhhceEe
Q 001395 1012 TAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN---MWTLIKSISLF 1069 (1086)
Q Consensus 1012 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~~~~ 1069 (1086)
..+..-+.+. .+..++..+..+...+.|++..+++.+|+. ||++||++||-
T Consensus 552 ~~l~~~~~~~-------~~~~~~~~l~~al~~~~~~is~aa~~lgi~R~T~yrklk~~gi~ 605 (606)
T COG3284 552 PELLEEQATP-------REDIEKAALLAALQATNGNISEAARLLGISRSTLYRKLKRHGIS 605 (606)
T ss_pred HHHHhhhccc-------ccchHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 5554432222 455666677778888999999999999998 99999999973
No 252
>PRK08727 hypothetical protein; Validated
Probab=99.32 E-value=8.5e-11 Score=128.40 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=116.8
Q ss_pred CCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 886 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~ 886 (1086)
..++|+||+|||||+|+++++.+. +...+.++..++. ..+...+.... ...+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 449999999999999999997653 5566666654432 22334444443 34599999999774321
Q ss_pred CCCCCCccHHHHHHHHHHHhccccCCCEEEEEecC-CCCC---CChhhhCCCCc--ceEeecCCCCHHHHHHHHHHHHhc
Q 001395 887 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK---IDPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRK 960 (1086)
Q Consensus 887 ~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN-~p~~---lD~aLlrpgRF--d~~I~~~~P~~~eR~~Il~~~l~~ 960 (1086)
.....++..++..... +..||+|+| .|.. +++++.+ || ..++.+++|+.+++.++++.+...
T Consensus 110 ---------~~~~~lf~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 ---------EDEVALFDFHNRARAA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred ---------HHHHHHHHHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1233444444433322 444666665 4444 4799998 86 468899999999999999987765
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 961 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 961 ~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
.++. .+..+..|++.+.| +.+.+.++++.....+... ...||...+++.+..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~---~~~it~~~~~~~l~~ 230 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA---KRRVTVPFLRRVLEE 230 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHhh
Confidence 4443 34457888888876 4445545566554434433 346888888877654
No 253
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.32 E-value=3.8e-11 Score=129.35 Aligned_cols=191 Identities=23% Similarity=0.312 Sum_probs=137.5
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL 845 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel 845 (1086)
...+.+++++|.+..|+.|.+.....+ .-.+..++||+|+.|||||+++|++..++ |..+|+|...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 456789999999999999988776432 23467789999999999999999998865 778888887766
Q ss_pred ccccccccHHHHHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--cCCCEEEEEecCC
Q 001395 846 FSKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATNR 922 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~~~~v~VI~aTN~ 922 (1086)
.. +..+++..+. ..+-|||+|++. + +..+.-...|-..|||.. ...||+|.+|+|+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F-----------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F-----------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C-----------CCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 32 4555655542 345699999865 2 334555677888888763 4568999999998
Q ss_pred CCCCChhhh---------------------CCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcc-cHHH----HHHHc
Q 001395 923 PDKIDPALL---------------------RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NIRE----LACLS 976 (1086)
Q Consensus 923 p~~lD~aLl---------------------rpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~-~l~~----La~~t 976 (1086)
-+.+.+.+. =..||...|.|..|+.++..+|++.++++.++.-+. .+.. .|..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 776632211 114999999999999999999999999887766432 2221 23333
Q ss_pred CCCcHHHHHHHHH
Q 001395 977 EGCTGADISLICR 989 (1086)
Q Consensus 977 ~g~sgadl~~l~~ 989 (1086)
.|.||+-..+.++
T Consensus 231 g~RSGRtA~QF~~ 243 (249)
T PF05673_consen 231 GGRSGRTARQFID 243 (249)
T ss_pred CCCCHHHHHHHHH
Confidence 4566665555544
No 254
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4.4e-11 Score=139.24 Aligned_cols=183 Identities=18% Similarity=0.268 Sum_probs=131.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc------------EEEE
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------LFTV 475 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~------------~i~I 475 (1086)
..|++++|.+..++.++..+... ..+.++|||||||+|||++|+++|+.+... ++.+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 45789999999999988888654 235679999999999999999999987542 1222
Q ss_pred cccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEe
Q 001395 476 NGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIA 551 (1086)
Q Consensus 476 ~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIa 551 (1086)
+... ......++.+++.+.. ..+.|++|||+|.+. ......|+..|+.. ....++|+
T Consensus 83 ~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~~--~~~~~~Il 143 (367)
T PRK14970 83 DAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEEP--PAHAIFIL 143 (367)
T ss_pred cccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhCC--CCceEEEE
Confidence 2111 1123456666665432 245699999999773 23456677777652 34567777
Q ss_pred ccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHH
Q 001395 552 ATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 631 (1086)
Q Consensus 552 tTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaD 631 (1086)
+++.+..+.+++++ |+. .+.+ +.|+.++...++...+.+.+..+++..++.++..+.| ..+.
T Consensus 144 ~~~~~~kl~~~l~s--r~~-~v~~--------------~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~ 205 (367)
T PRK14970 144 ATTEKHKIIPTILS--RCQ-IFDF--------------KRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRD 205 (367)
T ss_pred EeCCcccCCHHHHh--cce-eEec--------------CCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHH
Confidence 78788888888887 653 4566 8899999999999988888888889999999988765 4455
Q ss_pred HHHHHHH
Q 001395 632 LAALCNE 638 (1086)
Q Consensus 632 L~~L~~e 638 (1086)
+.+.++.
T Consensus 206 ~~~~lek 212 (367)
T PRK14970 206 ALSIFDR 212 (367)
T ss_pred HHHHHHH
Confidence 5444443
No 255
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.32 E-value=1.2e-11 Score=148.17 Aligned_cols=258 Identities=20% Similarity=0.291 Sum_probs=162.0
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccccc--
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW-- 849 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~-- 849 (1086)
..++|.....+++.+.+... ......+++.|++||||+++|+++.... +.+|+.++|..+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 34667777666666555421 1234569999999999999999998764 6799999997752211
Q ss_pred ---cc----ccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCC
Q 001395 850 ---VG----ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVN 913 (1086)
Q Consensus 850 ---vG----ese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~ 913 (1086)
.| ..................++||||||+.| ...++..|+..|+... ...+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-------------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-------------PLDAQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-------------CHHHHHHHHHHHhcCcEEECCCCceeeee
Confidence 11 11111111111122334579999999965 5677888998886432 1236
Q ss_pred EEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHhcC----CCC-Cccc---HHHHHH
Q 001395 914 VTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLRKI----PCS-SDVN---IRELAC 974 (1086)
Q Consensus 914 v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~~~----~l~-~d~~---l~~La~ 974 (1086)
+.||++|+..-. .+++.|+|.. .+.+..|...+|.+ +++++++.. +.. ..+. +..|..
T Consensus 270 ~rii~~~~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (463)
T TIGR01818 270 VRIVAATHQNLE---ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQ 346 (463)
T ss_pred eEEEEeCCCCHH---HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 889999986532 3333344431 34555666665543 555554332 211 1222 333333
Q ss_pred HcCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC-----C-C---------------------chhHH
Q 001395 975 LSEGCT--GADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ-----P-S---------------------EIHSY 1025 (1086)
Q Consensus 975 ~t~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~-----p-~---------------------~~~~~ 1025 (1086)
. +|. .++|++++++|+..+ ....|+.+|+...+.... + . ....+
T Consensus 347 ~--~wpgNvreL~~~~~~~~~~~-----~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T TIGR01818 347 L--RWPGNVRQLENLCRWLTVMA-----SGDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRGEQGLL 419 (463)
T ss_pred C--CCCChHHHHHHHHHHHHHhC-----CCCcccHHhchHHHhccccccccccccccccccccccccccccccccccchH
Confidence 3 455 499999999988765 234677788765542210 0 0 01134
Q ss_pred HHHHHHHHHHHhccccccccccccccccccchh---HHHHHhhc
Q 001395 1026 KELSAKFQRLVHSNAEADESGYQLRPSKSIGSN---MWTLIKSI 1066 (1086)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~~ 1066 (1086)
....+.+|+.++..+...+.|+...+++.+|++ ||+|||++
T Consensus 420 ~~~l~~~E~~~i~~al~~~~gn~~~aA~~Lgisr~tL~rkl~~~ 463 (463)
T TIGR01818 420 DRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLKEL 463 (463)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHhC
Confidence 455678999999999999999999999999999 99999874
No 256
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=4e-11 Score=143.75 Aligned_cols=187 Identities=19% Similarity=0.240 Sum_probs=138.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|++.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45789999999999999988554 23455799999999999999999998732
Q ss_pred -------cEEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 471 -------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 471 -------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
.++.+++.+- . .-..++.+.+.+.. ....|++|||+|.+ .....+.|+..|+
T Consensus 80 ~~~~~h~dv~eldaas~----~--gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NALLK~LE 142 (535)
T PRK08451 80 ALENRHIDIIEMDAASN----R--GIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNALLKTLE 142 (535)
T ss_pred HhhcCCCeEEEeccccc----c--CHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHHHHh
Confidence 2334433211 0 11335555444221 23359999999988 3456778899998
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. ...+.+|.+|+.+..+.+++++ |. ..+++ ..++.++..+.++..+...+..+++..++.
T Consensus 143 Ep--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F--------------~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~ 203 (535)
T PRK08451 143 EP--PSYVKFILATTDPLKLPATILS--RT-QHFRF--------------KQIPQNSIISHLKTILEKEGVSYEPEALEI 203 (535)
T ss_pred hc--CCceEEEEEECChhhCchHHHh--hc-eeEEc--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 75 4567788888888999999988 75 36666 889999999999988888888888899999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
++....| +.+++.+++..+...
T Consensus 204 Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 204 LARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHcCC-cHHHHHHHHHHHHHh
Confidence 9998877 777777777766544
No 257
>PRK05642 DNA replication initiation factor; Validated
Probab=99.31 E-value=7.6e-11 Score=128.84 Aligned_cols=180 Identities=13% Similarity=0.193 Sum_probs=124.8
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcC
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 885 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~ 885 (1086)
...++||||+|||||+|+++++++. +..++.++..++... ...+.+..+.. .+|+|||++.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCC--
Confidence 3568999999999999999998753 567788887776532 12233333333 49999999976321
Q ss_pred CCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhc
Q 001395 886 KESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRK 960 (1086)
Q Consensus 886 ~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~ 960 (1086)
......|+..++.....+..+||+++..|.. +.+.|.+ ||. .++.+..|+.+++..+++.....
T Consensus 113 ---------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 ---------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ---------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 2334556666665555556666666665643 3688888 884 67788999999999999976665
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 961 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 961 ~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.++. .+.-++.|++...+ +++.+..+++.....++.. ..+||..-+++++.
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~---~~~it~~~~~~~L~ 233 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA---QRKLTIPFLKETLG 233 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc---CCcCCHHHHHHHhc
Confidence 5443 34457888888886 7888888887665444432 35688877776653
No 258
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3e-11 Score=141.90 Aligned_cols=184 Identities=14% Similarity=0.204 Sum_probs=128.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+.++... +.+..+||+||||+||||+|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 45689999999999998887654 235569999999999999999999988652
Q ss_pred ----------------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHH
Q 001395 472 ----------------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMV 531 (1086)
Q Consensus 472 ----------------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~ 531 (1086)
++.+++.+. ..-..++.+.+.+. .....|+||||+|.+. ....
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~~~~ 144 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------IAAF 144 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------HHHH
Confidence 222222111 01233455544442 1234599999999883 2345
Q ss_pred HHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccc
Q 001395 532 ATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHS 611 (1086)
Q Consensus 532 ~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~ 611 (1086)
+.|+..|+.. .+.+++|++|+.+..+.+++++ |+. .+++ ..++.++....++..+...+..
T Consensus 145 ~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f--------------~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 145 NAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNF--------------KRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred HHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-Hhhc--------------CCCCHHHHHHHHHHHHHHcCCC
Confidence 6677777753 3466777777777777777776 543 4444 8899999998999888877777
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 612 LLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 612 l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
+++..++.++..+.| ..+.+.+.++.+
T Consensus 206 i~~~al~~l~~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 206 VDADALQLIGRKAQG-SMRDAQSILDQV 232 (397)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 889999999998877 445555544443
No 259
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=1.9e-11 Score=147.44 Aligned_cols=173 Identities=15% Similarity=0.266 Sum_probs=123.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCC
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 519 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r 519 (1086)
..++|||++|+|||+|++++++++ +..++++++.++...+...........|..- ...+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999976 5678999998887665443322222234322 2345799999999885321
Q ss_pred CCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC-CC---CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHH
Q 001395 520 KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-PD---SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPA 595 (1086)
Q Consensus 520 ~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~-~d---~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~ 595 (1086)
.....|+.+++.+...+.-+|| ++|. +. .+++.|++ ||..-+.+++ ..|+.+
T Consensus 394 ---------~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I------------~~PD~E 449 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDV------------QPPELE 449 (617)
T ss_pred ---------HHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEc------------CCCCHH
Confidence 2234566677666555554555 5554 33 56788988 8877775544 999999
Q ss_pred HHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 596 QRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 596 eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
.|.+||+.++...++.+++..++.|+.+..+ +.++|..++......+
T Consensus 450 tR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 450 TRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 9999999999988888999999999998765 4566666655544333
No 260
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=5.5e-11 Score=146.00 Aligned_cols=182 Identities=21% Similarity=0.286 Sum_probs=132.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++++|.+..++.|+.++... .-...+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 45689999999999999888654 124569999999999999999999998652
Q ss_pred ----------EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHH
Q 001395 472 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 537 (1086)
Q Consensus 472 ----------~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~l 537 (1086)
++.++.. .+..-..++++.+.+.. ....|+||||+|.|- ....+.|+..
T Consensus 82 ~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK~ 144 (620)
T PRK14948 82 RAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNALLKT 144 (620)
T ss_pred HHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHHHHH
Confidence 2222211 11223456777665432 234699999999882 3566788888
Q ss_pred hhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHH
Q 001395 538 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEV 617 (1086)
Q Consensus 538 Ld~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l 617 (1086)
|+. ..+.+++|++|+.++.+.+.+++ |+. .+.+ ..++.++....+.+.+.+.+..+++..+
T Consensus 145 LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f--------------~~l~~~ei~~~L~~ia~kegi~is~~al 205 (620)
T PRK14948 145 LEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDF--------------RRIPLEAMVQHLSEIAEKESIEIEPEAL 205 (620)
T ss_pred Hhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEe--------------cCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 886 34568888888888888888887 663 4555 7788888888888888777777778889
Q ss_pred HHHHHHcCCCcHHHHHHHHH
Q 001395 618 EYLSMATHGFVGADLAALCN 637 (1086)
Q Consensus 618 ~~La~~t~GfsgaDL~~L~~ 637 (1086)
..++..+.|- .+++.++++
T Consensus 206 ~~La~~s~G~-lr~A~~lLe 224 (620)
T PRK14948 206 TLVAQRSQGG-LRDAESLLD 224 (620)
T ss_pred HHHHHHcCCC-HHHHHHHHH
Confidence 9999988873 355544444
No 261
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=6.3e-11 Score=140.91 Aligned_cols=192 Identities=13% Similarity=0.222 Sum_probs=134.5
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccHH---HHHHHHHHHHhcCCeEEEEecCchh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK---AVRSLFAKARANAPSIIFFDEIDGL 880 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese~---~ir~lf~~A~~~~p~ILflDEid~L 880 (1086)
..+++|||++|||||+|++++++++ +..++.+++.++...+...... .+....+.. ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3469999999999999999999853 5788889988876655433221 222222222 34569999999977
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC-CCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHH
Q 001395 881 AAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-PDK---IDPALLRPGRFD--RLLYVGPPNETDREEIF 954 (1086)
Q Consensus 881 ~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~-p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il 954 (1086)
.. ....+..|...++....... .+|+++|. |.. +++.|.+ ||. .++.+.+|+.++|.+|+
T Consensus 219 ~~-----------k~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SY-----------KEKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cC-----------CHHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 32 23445566666655544444 45555554 433 5788887 885 57889999999999999
Q ss_pred HHHHhcCCC---CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 955 RIHLRKIPC---SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 955 ~~~l~~~~l---~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
+..++..++ ..+.-++.|+....| +.|.+..+|.++...+.... ....|+.+.++++++.+.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~-~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP-EEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc-CCCCCCHHHHHHHHhhcc
Confidence 999987553 234457778888886 78999999998876665432 125799999999988763
No 262
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.28 E-value=2.6e-11 Score=131.17 Aligned_cols=171 Identities=22% Similarity=0.355 Sum_probs=117.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHH-HHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~-~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
...++||||+|+|||+|.+++++++ +..++++++.++...+...... .+..+.+... ...+|+||+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 4568999999999999999999875 5678899888876654332211 1222333333 346999999999842
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC---CccccCCCCcceeeehhhhhhhhhcccCCCCCCCH
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSP 594 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i---dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~ 594 (1086)
..+....|..+++.+...++.+||.+...|..+ ++.+++ ||..-+.+.+ ..|+.
T Consensus 112 ---------~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l------------~~pd~ 168 (219)
T PF00308_consen 112 ---------KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVEL------------QPPDD 168 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----------------H
T ss_pred ---------chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhc------------CCCCH
Confidence 245667888888887777777777776666654 567777 7776554433 89999
Q ss_pred HHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 595 AQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 595 ~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
+.|.+|++......+..+++..++.++.+..+ +.++|..+++...
T Consensus 169 ~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 169 EDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 99999999999999989999999999998765 5667776665443
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=99.27 E-value=5.7e-11 Score=129.82 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=116.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 520 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~ 520 (1086)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..... .+|+|||++.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC--
Confidence 4679999999999999999998764 5677888877765421 2233333322 48999999987422
Q ss_pred CCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC---CccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHH
Q 001395 521 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQR 597 (1086)
Q Consensus 521 ~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i---dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR 597 (1086)
......|+.+++.....+..++|+++..|..+ .|.+++ ||..-+.+. +..|+.+++
T Consensus 113 -------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~------------l~~~~~e~~ 171 (234)
T PRK05642 113 -------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQ------------MRGLSDEDK 171 (234)
T ss_pred -------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeee------------cCCCCHHHH
Confidence 12335677777776666777777777666544 578888 775444332 289999999
Q ss_pred HHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 598 LEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 598 ~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
.+|++......+..++++.++.++++..+ +.+.+..++......+
T Consensus 172 ~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 172 LRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 99999777666777889999999998776 5566665555443333
No 264
>PRK06620 hypothetical protein; Validated
Probab=99.27 E-value=1.2e-10 Score=125.62 Aligned_cols=164 Identities=13% Similarity=0.203 Sum_probs=111.1
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 889 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~ 889 (1086)
..++||||||||||+|++++++..+..++. .... ....+ ....+|+|||||.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~--------- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENW--------- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccc---------
Confidence 569999999999999999999887754432 1000 01111 12359999999944
Q ss_pred CCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC--CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhcCCCC-
Q 001395 890 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK--IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS- 964 (1086)
Q Consensus 890 ~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~--lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~~~l~- 964 (1086)
.+. .|...++...+.+..+||+++..|.. + ++|.+ ||. .++.+..|+.+++..+++..+...++.
T Consensus 98 ----~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l 167 (214)
T PRK06620 98 ----QEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTI 167 (214)
T ss_pred ----hHH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 112 23333333334556778877766654 5 78887 885 378999999999999999888765554
Q ss_pred CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 965 SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 965 ~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
.+.-++.|+....+ +.+.+.++++.....+... ...||...+++++
T Consensus 168 ~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~---~~~it~~~~~~~l 213 (214)
T PRK06620 168 SRQIIDFLLVNLPR-EYSKIIEILENINYFALIS---KRKITISLVKEVL 213 (214)
T ss_pred CHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHh
Confidence 44457888888876 7778888877644333322 3568888877765
No 265
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.27 E-value=3.1e-11 Score=143.02 Aligned_cols=193 Identities=19% Similarity=0.276 Sum_probs=145.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE-------EE-Ecccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL-------FT-VNGPE 479 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~-------i~-I~~s~ 479 (1086)
..|++++|++.+...|+..+....+ ....||.||-||||||+||.+|+.+++.- -. ..|..
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri-----------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRI-----------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcc-----------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 4578999999999999999987633 34589999999999999999999886631 00 01111
Q ss_pred cccc-cc---------hhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCC
Q 001395 480 VVSQ-NY---------GESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTD 545 (1086)
Q Consensus 480 l~s~-~~---------Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~ 545 (1086)
+... ++ ...-..++.+.+.+. .....|++|||+|.| .....+.||..|+. ...
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLEE--PP~ 148 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLEE--PPS 148 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhccccc--Ccc
Confidence 1111 00 012234566666543 345579999999998 46677888888876 456
Q ss_pred CeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcC
Q 001395 546 GVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATH 625 (1086)
Q Consensus 546 ~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~ 625 (1086)
.|++|.+|..+..+++.+++ |+. .+.+ ..-+.++...-|...+.+.+...++..+..+++..+
T Consensus 149 hV~FIlATTe~~Kip~TIlS--Rcq-~f~f--------------kri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 149 HVKFILATTEPQKIPNTILS--RCQ-RFDF--------------KRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred CeEEEEecCCcCcCchhhhh--ccc-cccc--------------cCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 89999999999999999988 653 2333 778888999999999999999999999999999988
Q ss_pred CCcHHHHHHHHHHHHHH
Q 001395 626 GFVGADLAALCNEAALV 642 (1086)
Q Consensus 626 GfsgaDL~~L~~eA~~~ 642 (1086)
| +.+|...+.+.|...
T Consensus 212 G-s~RDalslLDq~i~~ 227 (515)
T COG2812 212 G-SLRDALSLLDQAIAF 227 (515)
T ss_pred C-ChhhHHHHHHHHHHc
Confidence 8 778888888877543
No 266
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.1e-10 Score=142.84 Aligned_cols=182 Identities=13% Similarity=0.207 Sum_probs=128.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+..+... .-+..+||+||+||||||+|+++|+.+.+.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 45789999999999999887554 234569999999999999999999998662
Q ss_pred ----------------EEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHH
Q 001395 472 ----------------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMV 531 (1086)
Q Consensus 472 ----------------~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~ 531 (1086)
|+.+++... ..-..++.+.+.+ ......|+||||+|.+. ....
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a~ 144 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAAF 144 (620)
T ss_pred ccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHHH
Confidence 112221110 0122344544443 22334699999999883 2345
Q ss_pred HHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccc
Q 001395 532 ATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHS 611 (1086)
Q Consensus 532 ~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~ 611 (1086)
+.|+..|+.. .+.+++|++|+.+..+.+.+++ |. ..+++ ..++.++....++..+...+..
T Consensus 145 naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef--------------~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 145 NAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNF--------------KRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEec--------------CCCCHHHHHHHHHHHHHHcCCC
Confidence 6788888874 3456777777777888888877 54 35666 8899999888888888877777
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHH
Q 001395 612 LLDSEVEYLSMATHGFVGADLAALCN 637 (1086)
Q Consensus 612 l~d~~l~~La~~t~GfsgaDL~~L~~ 637 (1086)
+++..++.++..+.| ..+++.+.++
T Consensus 206 I~~eal~~La~~s~G-dlr~al~eLe 230 (620)
T PRK14954 206 IDADALQLIARKAQG-SMRDAQSILD 230 (620)
T ss_pred CCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 889999999998887 3444444443
No 267
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=9.2e-11 Score=144.11 Aligned_cols=183 Identities=21% Similarity=0.279 Sum_probs=130.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..|++|+|++.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+++.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 45789999999999998887654 134568999999999999999999987532
Q ss_pred ---------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHh
Q 001395 472 ---------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 538 (1086)
Q Consensus 472 ---------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lL 538 (1086)
++.+++... . .-..++.+.+.+. .....|+||||+|.+. ....+.|+..|
T Consensus 82 ~i~~~~~~d~~~i~~~~~----~--~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLLk~L 144 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASH----T--SVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALLKTL 144 (585)
T ss_pred HHhcCCCCeEEEEecccc----C--CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHHHHH
Confidence 222222111 1 1122344433322 2335699999999883 34566788888
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
+.. ...++||++++..+.+.+.+++ |+. .+.+ ..++..+...+++..+...+..+++..+.
T Consensus 145 Eep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f--------------~~l~~~el~~~L~~~a~~egl~i~~eal~ 205 (585)
T PRK14950 145 EEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDF--------------HRHSVADMAAHLRKIAAAEGINLEPGALE 205 (585)
T ss_pred hcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeC--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 774 3567778788888888888877 654 4555 88999999999999888877778888899
Q ss_pred HHHHHcCCCcHHHHHHHHHH
Q 001395 619 YLSMATHGFVGADLAALCNE 638 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~L~~e 638 (1086)
.++..+.| +.+++.++++.
T Consensus 206 ~La~~s~G-dlr~al~~Lek 224 (585)
T PRK14950 206 AIARAATG-SMRDAENLLQQ 224 (585)
T ss_pred HHHHHcCC-CHHHHHHHHHH
Confidence 99988877 66666665554
No 268
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.26 E-value=5.2e-11 Score=135.82 Aligned_cols=215 Identities=22% Similarity=0.331 Sum_probs=131.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-------CC--cEEEEe
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GL--NFLAVK 841 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-------~~--~fi~v~ 841 (1086)
...|.+|+|++++++.+.-....+ ...|+||+|+||||||++||++|..+ +. .+..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 467999999999998877544311 12569999999999999999999887 33 222111
Q ss_pred C-Ccc--------c---------------ccccccc--HHHH---HHHHHHH--HhcCCeEEEEecCchhhhhcCCCCCC
Q 001395 842 G-PEL--------F---------------SKWVGES--EKAV---RSLFAKA--RANAPSIIFFDEIDGLAAIRGKESDG 890 (1086)
Q Consensus 842 ~-sel--------~---------------~~~vGes--e~~i---r~lf~~A--~~~~p~ILflDEid~L~~~r~~~~~~ 890 (1086)
+ +++ . +..+|.. +..+ +..|..- ......+||+|||+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------
Confidence 1 000 0 0011210 0000 0011110 0122359999999955
Q ss_pred CCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCCC-CCChhhhCCCCcceEeecCCCCH-HHHHHHHHHH
Q 001395 891 VSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPNE-TDREEIFRIH 957 (1086)
Q Consensus 891 ~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p~-~lD~aLlrpgRFd~~I~~~~P~~-~eR~~Il~~~ 957 (1086)
...+++.|+..|+... ....+++|+++|..+ .+.++++. ||...+.++.|.. ++|.+|++..
T Consensus 141 ---~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 141 ---EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ---CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 6788999999996432 124678888888654 58999999 9999999988877 8899999875
Q ss_pred HhcCC----C------C--------------------CcccHHH---HHHHcC-CCcHHHHHHHHHHHHHHHHHHhcCCC
Q 001395 958 LRKIP----C------S--------------------SDVNIRE---LACLSE-GCTGADISLICREAAISAIEENLDAS 1003 (1086)
Q Consensus 958 l~~~~----l------~--------------------~d~~l~~---La~~t~-g~sgadl~~l~~~A~~~A~~~~~~~~ 1003 (1086)
...-. + . .+..++. ++..+. .-.-+++. +++.|...|+.++ ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~G--r~ 292 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEG--AE 292 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcC--CC
Confidence 32100 0 0 0111122 222222 11234554 7777777777765 56
Q ss_pred CCCHHHHHHHHHh
Q 001395 1004 RITMQHLKTAIRH 1016 (1086)
Q Consensus 1004 ~It~~d~~~al~~ 1016 (1086)
.|+.+|+..+..-
T Consensus 293 ~V~~~Di~~~~~~ 305 (334)
T PRK13407 293 AVGRSHLRSVATM 305 (334)
T ss_pred eeCHHHHHHHHHH
Confidence 7999999776533
No 269
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=1e-10 Score=130.03 Aligned_cols=133 Identities=24% Similarity=0.272 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccc------cccccchhhHHHH-H--------------------HH
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE------VVSQNYGESEQAL-H--------------------EV 495 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~------l~s~~~Gese~~l-~--------------------~v 495 (1086)
.+.++||+||||||||++|+++|+.+|.+++.++|.. +++.+.|.....+ . .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3567999999999999999999999999999998754 3333322211111 1 11
Q ss_pred HHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--------------cCCCeeEEeccCCCC----
Q 001395 496 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------------RTDGVLVIAATNRPD---- 557 (1086)
Q Consensus 496 f~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--------------~~~~viVIatTN~~d---- 557 (1086)
+..+. ...+|+|||++.+ ...+...|+.+|+.-. ...++.||+|+|...
T Consensus 100 ~~A~~--~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR--EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH--cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22222 2359999999986 3556777888886421 123678999999763
Q ss_pred -CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHH
Q 001395 558 -SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALL 605 (1086)
Q Consensus 558 -~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l 605 (1086)
.+++++++ || ..+.+ +.|+.++-.+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i--------------~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFM--------------DYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEEC--------------CCCCHHHHHHHHHHhh
Confidence 45777887 77 35666 8899999999999875
No 270
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=5.4e-11 Score=117.26 Aligned_cols=121 Identities=42% Similarity=0.653 Sum_probs=86.5
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHHH---HHHHHHHHHhcCCeEEEEecCchhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKA---VRSLFAKARANAPSIIFFDEIDGLA 881 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~~---ir~lf~~A~~~~p~ILflDEid~L~ 881 (1086)
...+++++||||||||++++.++..+ +.+++.+++.+....+....... ....+..+....+.+|++||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~- 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL- 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh-
Confidence 45679999999999999999999998 89999999887654432221111 122334455567889999999965
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHhcccc----CCCEEEEEecCCCC--CCChhhhCCCCcceEeecC
Q 001395 882 AIRGKESDGVSVSDRVMSQLLVELDGLHQ----RVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVG 943 (1086)
Q Consensus 882 ~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~----~~~v~VI~aTN~p~--~lD~aLlrpgRFd~~I~~~ 943 (1086)
.......++..+..... ..++.+|++||... .+++.+.. ||+..+.++
T Consensus 97 ------------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 ------------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ------------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 22334556666654432 35789999999887 67888887 998777765
No 271
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.25 E-value=7.8e-11 Score=127.46 Aligned_cols=169 Identities=19% Similarity=0.322 Sum_probs=114.1
Q ss_pred CcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccHH-HHHHHHHHHHhcCCeEEEEecCchhhhhc
Q 001395 811 GILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAIR 884 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese~-~ir~lf~~A~~~~p~ILflDEid~L~~~r 884 (1086)
.++||||+|+|||+|.+|++++. +..++.+++.++...+...... .+..+....+ ...+|+||+++.+..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~-- 111 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG-- 111 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT--
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC--
Confidence 48999999999999999998763 6778899988876554332211 1222223222 345999999998842
Q ss_pred CCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHh
Q 001395 885 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLR 959 (1086)
Q Consensus 885 ~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~ 959 (1086)
....+..|...++.....++.+||.+...|.. +++.|.+ ||. .++.+..|+.++|.+|++..+.
T Consensus 112 ---------~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 112 ---------KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ---------chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 34567778888877766666666666566654 4777877 875 4889999999999999999998
Q ss_pred cCCCCCc-ccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 960 KIPCSSD-VNIRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 960 ~~~l~~d-~~l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
..++.-+ .-++.|+....+ +.++|..++++....+
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 7776633 336677777764 7888888887665544
No 272
>PRK08727 hypothetical protein; Validated
Probab=99.25 E-value=1.5e-10 Score=126.56 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=101.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 520 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~ 520 (1086)
...++|+||+|||||+|++++++++ +...+.++..++ ...+..+++... ...+|+|||++.+....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~- 109 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQR- 109 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCCh-
Confidence 3569999999999999999998764 555566654332 223344555443 33599999999885321
Q ss_pred CCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC---CccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHH
Q 001395 521 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQR 597 (1086)
Q Consensus 521 ~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i---dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR 597 (1086)
.....++.+++.....+.-+|+.+...|..+ ++++++ ||.....+. +++|+.+++
T Consensus 110 --------~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~------------l~~~~~e~~ 167 (233)
T PRK08727 110 --------EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIG------------LPVLDDVAR 167 (233)
T ss_pred --------HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEE------------ecCCCHHHH
Confidence 1223455556555434433444444466655 588888 774443332 299999999
Q ss_pred HHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 598 LEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 598 ~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
.+|++.+....+..+++..++.|++++.|
T Consensus 168 ~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 168 AAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 99999987777788899999999998875
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=5.2e-11 Score=141.26 Aligned_cols=171 Identities=16% Similarity=0.237 Sum_probs=114.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 520 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~ 520 (1086)
..+++||||+|+|||+|++++++++ +..+++++..++...+.......-...|.... ....+|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 4679999999999999999999876 67888888776654433221111112233322 346799999999885321
Q ss_pred CCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC---CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHH
Q 001395 521 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQR 597 (1086)
Q Consensus 521 ~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d---~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR 597 (1086)
.....|+..++.+...+..+|+.+++.|. .+++.+++ ||..-+.+++ .+|+.++|
T Consensus 219 --------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l------------~~pd~e~r 276 (445)
T PRK12422 219 --------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPL------------HPLTKEGL 276 (445)
T ss_pred --------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEec------------CCCCHHHH
Confidence 22345555555544444555555544454 45688888 8864444422 89999999
Q ss_pred HHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 598 LEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 598 ~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
.+||+..+...+..+++..++.++....+ ..+++...+...
T Consensus 277 ~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 277 RSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 99999999888888899999999987765 345555444433
No 274
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.25 E-value=6.2e-11 Score=130.92 Aligned_cols=178 Identities=25% Similarity=0.394 Sum_probs=117.3
Q ss_pred cccccccCCcHHHHHH---HHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEccccc
Q 001395 407 EQDISKLGGLSKEYAI---LKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPEV 480 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~---l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---~i~I~~s~l 480 (1086)
.++++|.+|++..+.+ |+.+|+.. .-..++|+||||||||+|||.|+....-+ |++++...
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~------------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQN------------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN- 200 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcC------------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-
Confidence 3566788888766543 34444333 23458999999999999999999876544 77776533
Q ss_pred ccccchhhHHHHHHHHHHhhc-----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC-
Q 001395 481 VSQNYGESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN- 554 (1086)
Q Consensus 481 ~s~~~Gese~~l~~vf~~a~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN- 554 (1086)
...+.++.+|+.++. ....||||||||.+...+ ...|+-.+ ..+.+++|++|.
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ-----------QD~fLP~V----E~G~I~lIGATTE 259 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ-----------QDTFLPHV----ENGDITLIGATTE 259 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh-----------hhccccee----ccCceEEEecccC
Confidence 234568888988754 346799999999884221 22343333 467899998874
Q ss_pred -CCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHc----------cCcc---ccchHHHHHH
Q 001395 555 -RPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLS----------GMEH---SLLDSEVEYL 620 (1086)
Q Consensus 555 -~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~----------~~~~---~l~d~~l~~L 620 (1086)
+.-.+..+|.+ |+ +++.+ .....+....||..-.. .++. .+++..++.+
T Consensus 260 NPSFqln~aLlS--RC-~VfvL--------------ekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyl 322 (554)
T KOG2028|consen 260 NPSFQLNAALLS--RC-RVFVL--------------EKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYL 322 (554)
T ss_pred CCccchhHHHHh--cc-ceeEe--------------ccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHH
Confidence 44467788887 65 34555 66777777777776332 1222 1456678899
Q ss_pred HHHcCCCcHHHHHHH
Q 001395 621 SMATHGFVGADLAAL 635 (1086)
Q Consensus 621 a~~t~GfsgaDL~~L 635 (1086)
+..++|=.-+.+..|
T Consensus 323 a~lsdGDaR~aLN~L 337 (554)
T KOG2028|consen 323 AYLSDGDARAALNAL 337 (554)
T ss_pred HHhcCchHHHHHHHH
Confidence 998888555555544
No 275
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=1.7e-10 Score=131.19 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=124.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-----~~~i~I~~s~l~s 482 (1086)
..|+++.|.+.+++.++..+... ...+++|+||||||||++++++++++. ..++.+++++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 35678999999999999887543 123589999999999999999999873 2455665443211
Q ss_pred ccchhhHHHHHHHHHHh-hc-CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 483 QNYGESEQALHEVFDSA-SQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a-~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
. ......+....... .. ..+.+|+|||+|.+. ......|+..++... ....+|.++|.+..+.
T Consensus 82 ~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~~~L~~~le~~~--~~~~lIl~~~~~~~l~ 146 (319)
T PRK00440 82 I--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQQALRRTMEMYS--QNTRFILSCNYSSKII 146 (319)
T ss_pred h--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHHHHHHHHHhcCC--CCCeEEEEeCCccccc
Confidence 1 00111222221111 11 235699999999883 123456777777643 3456677778777777
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 637 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~ 637 (1086)
+++++ |+. .+++ ++++.++...+++.++.+.+..+++..++.++..+.| ..+.+.+.++
T Consensus 147 ~~l~s--r~~-~~~~--------------~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~ 205 (319)
T PRK00440 147 DPIQS--RCA-VFRF--------------SPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQ 205 (319)
T ss_pred hhHHH--Hhh-eeee--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 77776 654 3555 8899999999999999888888889999999998776 3344433333
No 276
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-10 Score=142.82 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=151.7
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH----------hCCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE----------AGLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~----------~~~~fi~v 840 (1086)
.-.++-++|.++-++++.+.+. .+...+-+|+|+||+|||.++..+|.+ .+..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~-------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILS-------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHh-------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3466778898888777776665 345567899999999999999999976 36778888
Q ss_pred eCCccc--cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEE
Q 001395 841 KGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 918 (1086)
Q Consensus 841 ~~sel~--~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~ 918 (1086)
+...++ .+|.|+++..++.+++.+....+.||||||||.|.+.....++ .-.+-|-|--. ..++...+|+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~----a~DAaNiLKPa----LARGeL~~IG 304 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG----AMDAANLLKPA----LARGELRCIG 304 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc----ccchhhhhHHH----HhcCCeEEEE
Confidence 888775 4699999999999999999888999999999999876543221 11222323223 3366788999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCccc-----HHHHHHHcCCCc-----HHH
Q 001395 919 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-----IRELACLSEGCT-----GAD 983 (1086)
Q Consensus 919 aTN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~-----l~~La~~t~g~s-----gad 983 (1086)
||+..+ .-|+||-| ||. .|++.-|+.++-..||+-.-.++...+.+. +...+..+..|- +.-
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDK 381 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDK 381 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCch
Confidence 997543 24999999 995 778999999999999998877766554432 344444443322 222
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 984 ISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 984 l~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
--.++.+|+.....+. . .+...+.++..+.
T Consensus 382 AIDLiDeA~a~~~l~~-~-~p~~l~~~~~~~~ 411 (786)
T COG0542 382 AIDLLDEAGARVRLEI-D-KPEELDELERELA 411 (786)
T ss_pred HHHHHHHHHHHHHhcc-c-CCcchhHHHHHHH
Confidence 3355666665443332 2 3444444444433
No 277
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.24 E-value=1.5e-10 Score=142.52 Aligned_cols=191 Identities=23% Similarity=0.342 Sum_probs=124.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..|++|+|.+..++.+...+..+ .+.+++|+|||||||||+|+++++.. +.+|+.++|
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 46689999999888876655322 24579999999999999999998755 357899998
Q ss_pred ccccc-------ccchhhH----HHHHHHHHH----------hhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHH
Q 001395 478 PEVVS-------QNYGESE----QALHEVFDS----------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 536 (1086)
Q Consensus 478 s~l~s-------~~~Gese----~~l~~vf~~----------a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~ 536 (1086)
..+.. ...|... ...+..+.. .......+|||||++.| +......|+.
T Consensus 219 ~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~Ll~ 287 (615)
T TIGR02903 219 TTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNKLLK 287 (615)
T ss_pred hhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHHHHH
Confidence 76521 1111110 001111110 00112349999999877 3445566666
Q ss_pred Hhhccc--------------------------cCCCeeEEec-cCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCC
Q 001395 537 LMDGVC--------------------------RTDGVLVIAA-TNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPA 589 (1086)
Q Consensus 537 lLd~l~--------------------------~~~~viVIat-TN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~ 589 (1086)
.|+.-. ....+++|++ |+.++.+++++++ ||. .+.+
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~-------------- 350 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFF-------------- 350 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEe--------------
Confidence 664311 1123566654 5568889999988 886 4566
Q ss_pred CCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 590 AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 590 ~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
++++.+++.+|++..+...+..+++..++.|+..+. .++...+++..+.
T Consensus 351 ~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~ 399 (615)
T TIGR02903 351 EPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVY 399 (615)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHH
Confidence 889999999999999887766677888888887664 3454444444443
No 278
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.23 E-value=3.1e-11 Score=143.65 Aligned_cols=235 Identities=19% Similarity=0.240 Sum_probs=149.8
Q ss_pred CCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCcccccc---------ccccHHHHHHHHHHHHhcCCeEEEEec
Q 001395 809 PTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSKW---------VGESEKAVRSLFAKARANAPSIIFFDE 876 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~~---------vGese~~ir~lf~~A~~~~p~ILflDE 876 (1086)
...++++|.+||||+++|+++... .+.+|+.++|..+...+ .|......+..........+++|||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 456999999999999999999755 45799999998653221 111100000001112234467999999
Q ss_pred CchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc---------CCCEEEEEecCCCCCCChhhhCCCCcce-------Ee
Q 001395 877 IDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------RVNVTVIAATNRPDKIDPALLRPGRFDR-------LL 940 (1086)
Q Consensus 877 id~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~---------~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I 940 (1086)
||.| ....+..|+..++...- ..++.+|++|+.+.. .+..+|+|.+ .+
T Consensus 242 i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 242 IGDI-------------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYYRLNVV 305 (441)
T ss_pred cccC-------------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccc
Confidence 9966 56778889888864321 136789999877532 4445566653 45
Q ss_pred ecCCCCHHHHHH----HHHHHHhcC----CC----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 001395 941 YVGPPNETDREE----IFRIHLRKI----PC----SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 1008 (1086)
Q Consensus 941 ~~~~P~~~eR~~----Il~~~l~~~----~l----~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~ 1008 (1086)
.+..|...+|.+ +++.++.++ .. .....+..|....=.-+.++++++++.|+..+ +...|+.+
T Consensus 306 ~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~-----~~~~i~~~ 380 (441)
T PRK10365 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL-----TGEYISER 380 (441)
T ss_pred eecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC-----CCCccchH
Confidence 667788887754 555555432 11 11222333433331124589999999877653 34568888
Q ss_pred HHHHHHHhhC-CC-chhHHHHHHHHHHHHHhccccccccccccccccccchh---HHHHHhh
Q 001395 1009 HLKTAIRHVQ-PS-EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN---MWTLIKS 1065 (1086)
Q Consensus 1009 d~~~al~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---L~~~~k~ 1065 (1086)
|+...+.... +. ....... .+.+++.++..+.....|+..++++.+|++ ||+|||+
T Consensus 381 ~l~~~~~~~~~~~~~~~~~~~-l~~~e~~~i~~~l~~~~gn~~~aa~~Lgisr~tl~rk~~~ 441 (441)
T PRK10365 381 ELPLAIASTPIPLGQSQDIQP-LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 (441)
T ss_pred hCchhhcccccCcccccchhh-HHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHhhC
Confidence 8765443210 11 1111222 456889999999999999999999999999 9999985
No 279
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.23 E-value=1e-10 Score=115.32 Aligned_cols=120 Identities=37% Similarity=0.589 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHH---HHHHHHHhhcCCCeEEEEccchhhc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQA---LHEVFDSASQSAPAVVFIDELDAIA 516 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~---l~~vf~~a~~~~P~ILfIDEiD~l~ 516 (1086)
.+.+++++||||||||++++.+++.+ +.+++.+++.+............ ....+.......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 46789999999999999999999998 88999999877665433222111 1122233445567899999998772
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhcccc----CCCeeEEeccCCCC--CCCccccCCCCcceeeeh
Q 001395 517 PARKDGGEELSQRMVATLLNLMDGVCR----TDGVLVIAATNRPD--SIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 517 ~~r~~~~~~~~~rv~~~Ll~lLd~l~~----~~~viVIatTN~~d--~idpaL~r~GRfdr~I~i 575 (1086)
......++..+..... ..++.+|+++|... .+++.+.+ ||+.++.+
T Consensus 98 -----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~ 149 (151)
T cd00009 98 -----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVI 149 (151)
T ss_pred -----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeec
Confidence 2233455555555433 46788999998877 66777766 88766665
No 280
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.23 E-value=4.1e-10 Score=124.76 Aligned_cols=115 Identities=28% Similarity=0.307 Sum_probs=81.4
Q ss_pred CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC------------CCCCCccccCCCCcce
Q 001395 504 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 571 (1086)
Q Consensus 504 P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~------------~d~idpaL~r~GRfdr 571 (1086)
|.||||||+|.| +-.....|...|+. .---++|++||+ |..|+..|+ ||
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlL-----DR 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLL-----DR 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhh-----hh
Confidence 558888888776 33444455555543 223467788886 344554443 44
Q ss_pred eeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 572 EIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 572 ~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
.+-+.. .+++.++.++|++.........+++..++.|+.....-+-+-..+|+.-|...|.+|...
T Consensus 353 llII~t------------~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~ 418 (450)
T COG1224 353 LLIIST------------RPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK 418 (450)
T ss_pred eeEEec------------CCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC
Confidence 444432 789999999999999999889999999999999877777777778888777777776443
No 281
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=7.2e-10 Score=126.40 Aligned_cols=174 Identities=13% Similarity=0.242 Sum_probs=125.4
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------cEEEEeCCc
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--------NFLAVKGPE 844 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~--------~fi~v~~se 844 (1086)
+|++++|++.+++.+...+.. -+.+..+||+||+|+|||++|+++|+.+-+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 589999999999999888753 345667899999999999999999987532 222332210
Q ss_pred cccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec
Q 001395 845 LFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT 920 (1086)
++. -.-..+|++.+.+. .+...|++|||+|.+ +....|.||+.|+. +..++++|.+|
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcC--CCCCeEEEEEe
Confidence 111 12345777766443 344569999999965 56789999999995 45678888888
Q ss_pred CCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHH
Q 001395 921 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGAD 983 (1086)
Q Consensus 921 N~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgad 983 (1086)
+.++.+-+.+.+ |+ ++++|.+|+.++....++..... . ....++.++..+.|-.++.
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHHHH
Confidence 889999999998 77 58999999999888877665432 1 2334566777777755433
No 282
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=4.3e-10 Score=129.60 Aligned_cols=188 Identities=14% Similarity=0.150 Sum_probs=128.7
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-------cEEEE-e
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAV-K 841 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------~fi~v-~ 841 (1086)
.+..+++++|++++++.|...+.. -+.+..+||+||+|+|||++|+.+|+.+.+ +.... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 455789999999999999998873 245667999999999999999999988643 11000 0
Q ss_pred ---C-----------Cccc--cc---cc------cccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCC
Q 001395 842 ---G-----------PELF--SK---WV------GESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVS 892 (1086)
Q Consensus 842 ---~-----------sel~--~~---~v------Gese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~ 892 (1086)
+ +++. .. .. .-+...+|.+.+... .+...|++|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------ 153 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------ 153 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------
Confidence 0 1111 00 00 001234555544332 345569999999966
Q ss_pred ccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHH
Q 001395 893 VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIREL 972 (1086)
Q Consensus 893 ~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~L 972 (1086)
+....+.||+.|+.. ..++++|..|+.++.+.|.+.+ |+ +.+.|++|+.++..++++......++ .+..+..+
T Consensus 154 -~~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i 226 (351)
T PRK09112 154 -NRNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEAL 226 (351)
T ss_pred -CHHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHH
Confidence 567788999999853 4567777778889999999988 88 58999999999999999874433221 23336677
Q ss_pred HHHcCCCcHHHHHHHHH
Q 001395 973 ACLSEGCTGADISLICR 989 (1086)
Q Consensus 973 a~~t~g~sgadl~~l~~ 989 (1086)
++.+.|-.. ...++++
T Consensus 227 ~~~s~G~pr-~Al~ll~ 242 (351)
T PRK09112 227 LQRSKGSVR-KALLLLN 242 (351)
T ss_pred HHHcCCCHH-HHHHHHh
Confidence 788887444 3334443
No 283
>PHA02244 ATPase-like protein
Probab=99.22 E-value=5.4e-10 Score=127.28 Aligned_cols=122 Identities=23% Similarity=0.307 Sum_probs=83.2
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCC----ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP----ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~s----el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
....++|+||||||||++|+++|..++.+|+.++.- ++.+ ++.....-...-|-.|. ...++|||||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a--- 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDAS--- 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcC---
Confidence 345699999999999999999999999999999852 1111 11111111111222332 23469999999954
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhcc---------ccCCCEEEEEecCCC-----------CCCChhhhCCCCcceEeecC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGL---------HQRVNVTVIAATNRP-----------DKIDPALLRPGRFDRLLYVG 943 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~---------~~~~~v~VI~aTN~p-----------~~lD~aLlrpgRFd~~I~~~ 943 (1086)
...++..|...++.. ....++.+|+|+|.+ ..+++|++. ||- .|+|.
T Consensus 193 ----------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 193 ----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred ----------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 455566666666421 124578999999973 467999999 994 79999
Q ss_pred CCCH
Q 001395 944 PPNE 947 (1086)
Q Consensus 944 ~P~~ 947 (1086)
.|+.
T Consensus 260 yp~~ 263 (383)
T PHA02244 260 YDEK 263 (383)
T ss_pred CCcH
Confidence 9884
No 284
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=9.3e-11 Score=139.51 Aligned_cols=175 Identities=11% Similarity=0.211 Sum_probs=122.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHH---HHHHHHHHhhcCCCeEEEEccchhh
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ---ALHEVFDSASQSAPAVVFIDELDAI 515 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~---~l~~vf~~a~~~~P~ILfIDEiD~l 515 (1086)
..+++|||++|+|||+|++++++++ +..++++++.++...+...... .+..+.+.. ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4579999999999999999999865 4678889988877665433221 122222222 34569999999988
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCC---CCccccCCCCcceeeehhhhhhhhhcccCCCCCC
Q 001395 516 APARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVP 592 (1086)
Q Consensus 516 ~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~---idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~P 592 (1086)
..+ ......|..+++.+...+..+||.+...|.. +++.+++ ||..-+.+++ ..|
T Consensus 219 ~~k---------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L------------~~p 275 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAI------------QKL 275 (450)
T ss_pred cCC---------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceecc------------CCc
Confidence 421 2344566666666655555444444444443 4677877 8876665544 999
Q ss_pred CHHHHHHHHHHHHccCcc--ccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 593 SPAQRLEILHALLSGMEH--SLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 593 d~~eR~~IL~~~l~~~~~--~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
+.++|.+|++..+...+. .+++..++.|+....| ..+.+..++..+...+.
T Consensus 276 d~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 276 DNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 999999999999987553 5788999999998887 67777777776654443
No 285
>PRK06620 hypothetical protein; Validated
Probab=99.19 E-value=2.4e-10 Score=123.17 Aligned_cols=148 Identities=14% Similarity=0.268 Sum_probs=104.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCc
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE 524 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~ 524 (1086)
..++||||||||||+|++++++..+..++. .... ....+. ...+|+|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~~-----~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEILE-----KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHHh-----cCCEEEEeccccch--------
Confidence 679999999999999999999887654332 1000 011111 23599999998441
Q ss_pred hhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC-ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 525 ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE-PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 525 ~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id-paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
. ..|..+++.+...+..++|+++..|..+. +++++ |+.....+.+ ..|+.+.+..+++.
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~S--Rl~~gl~~~l------------~~pd~~~~~~~l~k 158 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSS--RIKSVLSILL------------NSPDDELIKILIFK 158 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHH--HHhCCceEee------------CCCCHHHHHHHHHH
Confidence 1 24556666666677778888887666521 77888 8865433322 99999999999999
Q ss_pred HHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 604 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 604 ~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
.....+..+++..++.|+.+..| ..+.+..++...
T Consensus 159 ~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 159 HFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred HHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 98877788899999999998876 455555555543
No 286
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-09 Score=126.30 Aligned_cols=218 Identities=21% Similarity=0.325 Sum_probs=147.0
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-----EEEEeCCccccc--
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN-----FLAVKGPELFSK-- 848 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~-----fi~v~~sel~~~-- 848 (1086)
.+.+.++..+++...+.-. +.-..|.++++||+||||||.+++.++.+.... ++.|||..+-+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~---------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPA---------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHH---------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3667777777777765432 233456679999999999999999999886433 899999665221
Q ss_pred -------------cccccH-HHHHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCC
Q 001395 849 -------------WVGESE-KAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN 913 (1086)
Q Consensus 849 -------------~vGese-~~ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~ 913 (1086)
..|.+. +..+.+++.... ...-||+|||+|.|....+ .++-.|+...+.. ..+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~--~~~ 156 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN--KVK 156 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc--cee
Confidence 112222 222333333332 4456999999999965421 4555566555443 567
Q ss_pred EEEEEecCCCC---CCChhhhCCCCcc-eEeecCCCCHHHHHHHHHHHHhcCCCC---CcccHHHHH---HHcCCCcHHH
Q 001395 914 VTVIAATNRPD---KIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKIPCS---SDVNIRELA---CLSEGCTGAD 983 (1086)
Q Consensus 914 v~VI~aTN~p~---~lD~aLlrpgRFd-~~I~~~~P~~~eR~~Il~~~l~~~~l~---~d~~l~~La---~~t~g~sgad 983 (1086)
+.||+.+|..+ .+|+-+.+ +|. ..|.|++++.++...|++...+.---. .+.-+..+| ....| +.|-
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 89999999874 57888877 553 468999999999999999887642111 222233333 33344 5666
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 001395 984 ISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 984 l~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p 1019 (1086)
.-.+|+.|+..|-++. ...++.+|...|...+..
T Consensus 234 aidilr~A~eiAe~~~--~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 234 AIDILRRAGEIAEREG--SRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHhhH
Confidence 7788999999998776 668999999999655543
No 287
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.19 E-value=2.6e-10 Score=130.47 Aligned_cols=161 Identities=22% Similarity=0.325 Sum_probs=106.7
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC-------CcEEE-Ee
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-------LNFLA-VK 841 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~-------~~fi~-v~ 841 (1086)
+...|.+|+|++++|..|...+..| ...|+||.|++|||||++||+++..+. .+|.. .+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999999988776542 335799999999999999999976642 23320 00
Q ss_pred CCcc-----ccc---------------c----ccccHHH------HHHHHHHHH---------hcCCeEEEEecCchhhh
Q 001395 842 GPEL-----FSK---------------W----VGESEKA------VRSLFAKAR---------ANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 842 ~sel-----~~~---------------~----vGese~~------ir~lf~~A~---------~~~p~ILflDEid~L~~ 882 (1086)
.+++ .+. + .|.++.. +...|.... .....+||+|||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 0010 000 0 1112221 111222111 122459999999965
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCCC-CCChhhhCCCCcceEeecCCCC-HHH
Q 001395 883 IRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPN-ETD 949 (1086)
Q Consensus 883 ~r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p~-~lD~aLlrpgRFd~~I~~~~P~-~~e 949 (1086)
...+++.|+..|+... ...++++|++.|..+ .+.++++. ||...+.+..|+ .++
T Consensus 157 -----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 157 -----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 6788899999986421 123567777777554 58999999 999999999998 588
Q ss_pred HHHHHHHHH
Q 001395 950 REEIFRIHL 958 (1086)
Q Consensus 950 R~~Il~~~l 958 (1086)
+.+|++...
T Consensus 224 e~~il~~~~ 232 (350)
T CHL00081 224 RVKIVEQRT 232 (350)
T ss_pred HHHHHHhhh
Confidence 999998753
No 288
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=7.9e-10 Score=128.07 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=126.8
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcE------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF------------ 837 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f------------ 837 (1086)
.+..+++|+|++.+++.|.+.+.. -+.+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 345789999999999999988874 24567799999999999999999998752100
Q ss_pred -EEEe-------------CCccccc-----ccc------ccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCC
Q 001395 838 -LAVK-------------GPELFSK-----WVG------ESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKES 888 (1086)
Q Consensus 838 -i~v~-------------~sel~~~-----~vG------ese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~ 888 (1086)
+.+. -+++.-- ..| -.-..+|++...+. ...+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 0000 0111100 000 01344666665543 356789999999965
Q ss_pred CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCccc
Q 001395 889 DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN 968 (1086)
Q Consensus 889 ~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~ 968 (1086)
+...++.||+.|+. +..++++|++|++++.+.+.+.+ |+ +.+.|++|+.++..+++...... ..+..
T Consensus 154 -----~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 154 -----NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred -----CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 57889999999984 34578888899999999898887 77 58899999999999888775422 12222
Q ss_pred HHHHHHHcCCCcHHH
Q 001395 969 IRELACLSEGCTGAD 983 (1086)
Q Consensus 969 l~~La~~t~g~sgad 983 (1086)
+..++..+.|-.+.-
T Consensus 221 ~~~l~~~s~Gsp~~A 235 (365)
T PRK07471 221 RAALAALAEGSVGRA 235 (365)
T ss_pred HHHHHHHcCCCHHHH
Confidence 356777888755433
No 289
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=5.2e-10 Score=137.50 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=134.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----------------- 470 (1086)
..|++|+|.+.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 45789999999999999988654 23456899999999999999999998753
Q ss_pred --------cEEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHh
Q 001395 471 --------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 538 (1086)
Q Consensus 471 --------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lL 538 (1086)
+++.+++.+. ..-..++.+.+.+.. ....|++|||+|.+. ....+.|+..|
T Consensus 83 ~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLLK~L 145 (614)
T PRK14971 83 AFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFLKTL 145 (614)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHHHHH
Confidence 2334443211 112345555554422 234599999999882 34567888888
Q ss_pred hccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHH
Q 001395 539 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 539 d~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
+.. .+.+++|++|+....+-+++++ |+. .+++ ..++.++....++..+...+..+++..++
T Consensus 146 Eep--p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f--------------~~ls~~ei~~~L~~ia~~egi~i~~~al~ 206 (614)
T PRK14971 146 EEP--PSYAIFILATTEKHKILPTILS--RCQ-IFDF--------------NRIQVADIVNHLQYVASKEGITAEPEALN 206 (614)
T ss_pred hCC--CCCeEEEEEeCCchhchHHHHh--hhh-eeec--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 874 3467788888777888888888 653 4555 88999999999998888888888888899
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 001395 619 YLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~L~~eA 639 (1086)
.|+..+.| ..+++.+++...
T Consensus 207 ~La~~s~g-dlr~al~~Lekl 226 (614)
T PRK14971 207 VIAQKADG-GMRDALSIFDQV 226 (614)
T ss_pred HHHHHcCC-CHHHHHHHHHHH
Confidence 99988865 555555555443
No 290
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.17 E-value=1.5e-10 Score=130.47 Aligned_cols=137 Identities=19% Similarity=0.181 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc--cchhhHHHH----------HHHHHHhhcCCCeEEEEc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ--NYGESEQAL----------HEVFDSASQSAPAVVFID 510 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~--~~Gese~~l----------~~vf~~a~~~~P~ILfID 510 (1086)
.+++|||.||||||||++|+.+|+.++.+++.|++...+.. .+|.....+ ...+-.|. ..+.+|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 46789999999999999999999999999999988766544 444321111 11122232 245789999
Q ss_pred cchhhccCCCCCCchhHHHHHHHHHHHhhc------------cccCCCeeEEeccCCCC------------CCCccccCC
Q 001395 511 ELDAIAPARKDGGEELSQRMVATLLNLMDG------------VCRTDGVLVIAATNRPD------------SIEPALRRP 566 (1086)
Q Consensus 511 EiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~------------l~~~~~viVIatTN~~d------------~idpaL~r~ 566 (1086)
|+|.. ..++...|..+|+. +.....+.||+|.|..+ .++++++.
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99977 24455565555552 11335688999999866 24566766
Q ss_pred CCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc
Q 001395 567 GRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG 607 (1086)
Q Consensus 567 GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~ 607 (1086)
||-..+.+ +.|+.++-.+|+......
T Consensus 210 -RF~i~~~~--------------~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTL--------------NYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeC--------------CCCCHHHHHHHHHhhccC
Confidence 77655566 889999999999876543
No 291
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.16 E-value=6e-10 Score=127.47 Aligned_cols=212 Identities=21% Similarity=0.255 Sum_probs=130.7
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-------CCcEE-------
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GLNFL------- 838 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-------~~~fi------- 838 (1086)
.|..|+|++++|..|.-.+..| ...+++|.|+||+||||+++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999999998876555422 23569999999999999999999776 22221
Q ss_pred ------EE--e-------------CCcccc-----ccccccH--HHH--------HHHHHHHHhcCCeEEEEecCchhhh
Q 001395 839 ------AV--K-------------GPELFS-----KWVGESE--KAV--------RSLFAKARANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 839 ------~v--~-------------~sel~~-----~~vGese--~~i--------r~lf~~A~~~~p~ILflDEid~L~~ 882 (1086)
.. . -.++-. ..+|... ..+ ..++.+ ....+||+|||+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhC--
Confidence 00 0 011110 2222210 000 111222 22359999999965
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCCC-CCChhhhCCCCcceEeecCCCCH-HH
Q 001395 883 IRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPNE-TD 949 (1086)
Q Consensus 883 ~r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p~-~lD~aLlrpgRFd~~I~~~~P~~-~e 949 (1086)
...+++.|+..|+... ...++++|+++|..+ .+.++++. ||...+.++.|.. ++
T Consensus 144 -----------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 144 -----------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 5788899999986421 123567777777544 58999999 9999999998876 88
Q ss_pred HHHHHHHHHhcC--C------C----------------------CCccc---HHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 950 REEIFRIHLRKI--P------C----------------------SSDVN---IRELACLSEGCTGADISLICREAAISAI 996 (1086)
Q Consensus 950 R~~Il~~~l~~~--~------l----------------------~~d~~---l~~La~~t~g~sgadl~~l~~~A~~~A~ 996 (1086)
|.+|++...... + . -.+.. +..++..+..-+.|.-..+++-|...|.
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 889888743210 0 0 00111 2223333332234555566666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHhh
Q 001395 997 EENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 997 ~~~~~~~~It~~d~~~al~~~ 1017 (1086)
.++ ...|+.+|+..+..-+
T Consensus 291 l~G--R~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 291 FEG--RTEVTVDDIRRVAVLA 309 (337)
T ss_pred HcC--CCCCCHHHHHHHHHHH
Confidence 655 5579999999877554
No 292
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.16 E-value=1.7e-10 Score=127.45 Aligned_cols=265 Identities=18% Similarity=0.227 Sum_probs=164.2
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCcc-
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPEL- 845 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel- 845 (1086)
+...|+.+++.+...+.+.+.... +. .....+||.|.+||||.++||+.-.. ...||+.+||..+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k-------~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK-------LA----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH-------hh----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 345678888887776665554331 11 12344999999999999999998544 4789999999654
Q ss_pred --------ccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------
Q 001395 846 --------FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 909 (1086)
Q Consensus 846 --------~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-------- 909 (1086)
++.-.| .+.-..+|+.|.++ .+|+|||. +.+.+++.+||+.|....
T Consensus 268 e~~aEsElFG~apg--~~gk~GffE~AngG---TVlLDeIg-------------EmSp~lQaKLLRFL~DGtFRRVGee~ 329 (511)
T COG3283 268 EDAAESELFGHAPG--DEGKKGFFEQANGG---TVLLDEIG-------------EMSPRLQAKLLRFLNDGTFRRVGEDH 329 (511)
T ss_pred hhHhHHHHhcCCCC--CCCccchhhhccCC---eEEeehhh-------------hcCHHHHHHHHHHhcCCceeecCCcc
Confidence 444333 22334677777665 99999998 457899999999995331
Q ss_pred -cCCCEEEEEecCCCCC--CChhhhCCCCcce--EeecCCCCHHHHHH----HH----HHHHhcCCCCC-cccHHHHHHH
Q 001395 910 -QRVNVTVIAATNRPDK--IDPALLRPGRFDR--LLYVGPPNETDREE----IF----RIHLRKIPCSS-DVNIRELACL 975 (1086)
Q Consensus 910 -~~~~v~VI~aTN~p~~--lD~aLlrpgRFd~--~I~~~~P~~~eR~~----Il----~~~l~~~~l~~-d~~l~~La~~ 975 (1086)
-..+|.||+||..+-. ++...+|..-|.+ ++.+..|...+|.. +. +.+..+.+... ..+-+.+...
T Consensus 330 Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 330 EVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred eEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 1347999999987633 2333333332322 67778888888754 33 33444444331 2222222222
Q ss_pred c-CCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC-----chhHHHHHHHHHHHHHhcccccccccc
Q 001395 976 S-EGCT--GADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS-----EIHSYKELSAKFQRLVHSNAEADESGY 1047 (1086)
Q Consensus 976 t-~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1086)
+ .+|. .+++.+++-+|+... ....++.+|+.-+-....+. ....++++...|++.+...-....- .
T Consensus 410 ~~y~WpGNVRqL~N~iyRA~s~~-----Eg~~l~i~~i~Lp~~~~~~~~~~~~~~gsLdei~~~fE~~VL~rly~~yP-S 483 (511)
T COG3283 410 TRYAWPGNVRQLKNAIYRALTLL-----EGYELRIEDILLPDYDAATVVGEDALEGSLDEIVSRFERSVLTRLYRSYP-S 483 (511)
T ss_pred HHcCCCccHHHHHHHHHHHHHHh-----ccCccchhhcccCCcccccccchhhccCCHHHHHHHHHHHHHHHHHHhCC-c
Confidence 2 1344 488988888777654 34567777765433222221 3457888999999988776443221 1
Q ss_pred ccccccccchh---HHHHHhhceEe
Q 001395 1048 QLRPSKSIGSN---MWTLIKSISLF 1069 (1086)
Q Consensus 1048 ~~~~~~~~g~~---L~~~~k~~~~~ 1069 (1086)
.-+-++.+|.. +-.|++.||+-
T Consensus 484 tRkLAkRLgvSHTaIAnKLRqyGi~ 508 (511)
T COG3283 484 TRKLAKRLGVSHTAIANKLRQYGIG 508 (511)
T ss_pred HHHHHHHhCCcHHHHHHHHHHhCCC
Confidence 11223455665 78888888874
No 293
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.15 E-value=1.9e-09 Score=114.28 Aligned_cols=207 Identities=19% Similarity=0.223 Sum_probs=143.2
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccc
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS 482 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s 482 (1086)
....+.+|.|++.+++.|.+..... ..-.|..+|||+|..||||++|+||+-+++ |..+++|+-.++.
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F--------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~- 125 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQF--------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA- 125 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHH--------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-
Confidence 3456789999999999998876554 233578899999999999999999998877 5578888877763
Q ss_pred ccchhhHHHHHHHHHHhhcC-CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc--ccCCCeeEEeccCCCCCC
Q 001395 483 QNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSI 559 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l--~~~~~viVIatTN~~d~i 559 (1086)
.+-.+++..+.. .+-|||+|++- + +........|...||+- ....+|+|.+|+|+...+
T Consensus 126 --------~Lp~l~~~Lr~~~~kFIlFcDDLS-F---------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 126 --------TLPDLVELLRARPEKFILFCDDLS-F---------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred --------hHHHHHHHHhcCCceEEEEecCCC-C---------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccc
Confidence 234445544432 34599999962 1 11233456777788874 234689999999998877
Q ss_pred CccccCCCCcceeeeh------hhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHH----HHHcCCCcH
Q 001395 560 EPALRRPGRLDREIEI------DMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL----SMATHGFVG 629 (1086)
Q Consensus 560 dpaL~r~GRfdr~I~i------~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~L----a~~t~Gfsg 629 (1086)
+..+...-....+|.- ++++=.+|+-.+.|.+++.++.+.|++.+.+..++.+++..++.- |....|-+|
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSG 267 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSG 267 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence 6444321122112211 345566778888889999999999999999998888776555433 333456677
Q ss_pred HHHHHHHHHH
Q 001395 630 ADLAALCNEA 639 (1086)
Q Consensus 630 aDL~~L~~eA 639 (1086)
+-..+.++..
T Consensus 268 R~A~QF~~~~ 277 (287)
T COG2607 268 RVAWQFIRDL 277 (287)
T ss_pred HhHHHHHHHH
Confidence 7666665543
No 294
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.15 E-value=8.8e-10 Score=125.42 Aligned_cols=172 Identities=26% Similarity=0.351 Sum_probs=118.7
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC---------------------
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--------------------- 834 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~--------------------- 834 (1086)
+++|.+.+...+..++... .+.+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc-----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4566777777776666521 13344699999999999999999999876
Q ss_pred ---CcEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhc
Q 001395 835 ---LNFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 907 (1086)
Q Consensus 835 ---~~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~ 907 (1086)
-+++++++++....- -....++++...... ....|++|||+|.+ +...++.++..|+.
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-------------t~~A~nallk~lEe 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-------------TEDAANALLKTLEE 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-------------hHHHHHHHHHHhcc
Confidence 578888888754321 234455555554433 34579999999976 45788999999984
Q ss_pred cccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHH
Q 001395 908 LHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLI 987 (1086)
Q Consensus 908 ~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l 987 (1086)
+..+..+|++||++..|-+.+.+ |+ ..+.|++|+...+....+ +..+..++....| |++..
T Consensus 136 --p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~~~~g----d~r~~ 196 (325)
T COG0470 136 --PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAAVAEG----DARKA 196 (325)
T ss_pred --CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh----------ccchhHHHHHHHH----HHHcC
Confidence 46689999999999999998888 77 477887755544444443 3344455555544 55555
Q ss_pred HHHHH
Q 001395 988 CREAA 992 (1086)
Q Consensus 988 ~~~A~ 992 (1086)
++...
T Consensus 197 i~~lq 201 (325)
T COG0470 197 INPLQ 201 (325)
T ss_pred CCHHH
Confidence 44333
No 295
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.14 E-value=1.5e-10 Score=130.56 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc--cccccHHH----------HHHHHHHHHhcCCeEEEEe
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK--WVGESEKA----------VRSLFAKARANAPSIIFFD 875 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~--~vGese~~----------ir~lf~~A~~~~p~ILflD 875 (1086)
..++++|.||||||||++|+.+|..++.+++.+++...... ++|...-. ....+..|.. .+++|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 45679999999999999999999999999999998654433 34432110 1123344433 46789999
Q ss_pred cCchhhhhcCCCCCCCCccHHHHHHHHHHHhcc------------ccCCCEEEEEecCCCC------------CCChhhh
Q 001395 876 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL------------HQRVNVTVIAATNRPD------------KIDPALL 931 (1086)
Q Consensus 876 Eid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~------------~~~~~v~VI~aTN~p~------------~lD~aLl 931 (1086)
|++.. ...+++.|...|+.- ....+.+||+|+|..+ .+++|++
T Consensus 142 Ein~a-------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 142 EYDAG-------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred hhhcc-------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 99954 455666666666521 1223688999999754 3689999
Q ss_pred CCCCcceEeecCCCCHHHHHHHHHHHHhc
Q 001395 932 RPGRFDRLLYVGPPNETDREEIFRIHLRK 960 (1086)
Q Consensus 932 rpgRFd~~I~~~~P~~~eR~~Il~~~l~~ 960 (1086)
. ||-.++.+..|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 8 99878899999999999999876543
No 296
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=7.2e-10 Score=116.91 Aligned_cols=144 Identities=21% Similarity=0.262 Sum_probs=103.3
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCc------------------------EEEEeCCccccccccccHHHHHHHHH
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLN------------------------FLAVKGPELFSKWVGESEKAVRSLFA 862 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------------------fi~v~~sel~~~~vGese~~ir~lf~ 862 (1086)
+.+..+|||||+|+|||++|+++++.+... +..+.... .. -....++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 455679999999999999999999886431 22221110 00 12356666666
Q ss_pred HHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcce
Q 001395 863 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 938 (1086)
Q Consensus 863 ~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~ 938 (1086)
.+.. ....|++|||+|.+ ....++.|+..|+.. ..+..+|++||.+..+.+++.+ |+ .
T Consensus 87 ~~~~~~~~~~~kviiide~~~l-------------~~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERM-------------NEAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhh-------------CHHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-E
Confidence 6643 44569999999976 456788899999863 3467777778888999999998 77 4
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCC
Q 001395 939 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 978 (1086)
Q Consensus 939 ~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g 978 (1086)
++.|++|+.++..++++.. ++. +..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888776 332 3446677777766
No 297
>PRK04132 replication factor C small subunit; Provisional
Probab=99.14 E-value=9.8e-10 Score=137.47 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=127.4
Q ss_pred CcceeC--CCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccHHHHHHHHHHHHhc------CCeEEEEecC
Q 001395 811 GILMFG--PPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN------APSIIFFDEI 877 (1086)
Q Consensus 811 gvLL~G--PpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~------~p~ILflDEi 877 (1086)
+-+..| |++.||||+|++||+++ +.+++++|+++..+ -..+|.+++.+... ...|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 356778 99999999999999997 56899999998532 34566666654322 2369999999
Q ss_pred chhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHH
Q 001395 878 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIH 957 (1086)
Q Consensus 878 d~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~ 957 (1086)
|.| +...++.|+..|+.. ..++.+|++||+++.+.+++.+ || ..+.|++|+.++....++..
T Consensus 640 D~L-------------t~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 640 DAL-------------TQDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred ccC-------------CHHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 966 567899999999853 4588999999999999999998 87 68899999999999888888
Q ss_pred HhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 958 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 958 l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+++.++. .+..+..++..+.| |++.+++.....+.. ...|+.+++....
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~----~~~It~~~V~~~~ 751 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG----DMRRAINILQAAAAL----DDKITDENVFLVA 751 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHh----cCCCCHHHHHHHh
Confidence 7765543 45568889999998 555444432222211 1346666655443
No 298
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.6e-09 Score=124.85 Aligned_cols=188 Identities=19% Similarity=0.231 Sum_probs=124.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------EE-EEc---
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------LF-TVN--- 476 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~-------~i-~I~--- 476 (1086)
..+.+|+|.+.+++.+...+... +-+..+||+||+|+|||++|+.+|+.+.+. .. ...
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~ 88 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA 88 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC
Confidence 34578999999999999988655 234569999999999999999999987541 10 000
Q ss_pred c-----------cccc---cc--cc-h--hh---HHHHHHH---HHH-hhcCCCeEEEEccchhhccCCCCCCchhHHHH
Q 001395 477 G-----------PEVV---SQ--NY-G--ES---EQALHEV---FDS-ASQSAPAVVFIDELDAIAPARKDGGEELSQRM 530 (1086)
Q Consensus 477 ~-----------s~l~---s~--~~-G--es---e~~l~~v---f~~-a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv 530 (1086)
| +++. .. .. | .. -..++.+ |.. +..+...|++|||+|.+ ....
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~~~a 157 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------NRNA 157 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------CHHH
Confidence 0 0110 00 00 0 00 1223333 222 23345679999999988 3455
Q ss_pred HHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc
Q 001395 531 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH 610 (1086)
Q Consensus 531 ~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~ 610 (1086)
.+.|+..|+.. ..++++|..|+.++.+.|.+++ |+ +.+.+ ++|+.++..++|+......+
T Consensus 158 anaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l--------------~pl~~~~~~~~L~~~~~~~~- 217 (351)
T PRK09112 158 ANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISL--------------KPLDDDELKKALSHLGSSQG- 217 (351)
T ss_pred HHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEe--------------cCCCHHHHHHHHHHhhcccC-
Confidence 67799999874 3456777778889999999988 77 47777 99999999999987433222
Q ss_pred ccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 611 SLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 611 ~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
.++..+..++..+.| +++....+....
T Consensus 218 -~~~~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 218 -SDGEITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred -CCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 446667778777776 344444444433
No 299
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.12 E-value=1.3e-09 Score=123.05 Aligned_cols=73 Identities=32% Similarity=0.447 Sum_probs=52.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEcccccccccchhh
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg--~~~i~I~~s~l~s~~~Ges 488 (1086)
+.++|+.++.+..-=++.+.+ -+--.++++||.||||||||.||-++|++|| .+|+.++++++.+..+..+
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk-------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKT 96 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIK-------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKT 96 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHH-------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HH
T ss_pred ccccChHHHHHHHHHHHHHHh-------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCch
Confidence 578999988887766666552 2233588999999999999999999999997 6899999988877655555
Q ss_pred HH
Q 001395 489 EQ 490 (1086)
Q Consensus 489 e~ 490 (1086)
|.
T Consensus 97 E~ 98 (398)
T PF06068_consen 97 EA 98 (398)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 300
>PRK09087 hypothetical protein; Validated
Probab=99.12 E-value=1.6e-09 Score=117.78 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=114.2
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 890 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~ 890 (1086)
.++|+||+|+|||+|+++++...+..++.. .++.. +.+..... .+|+|||++.+.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~--------- 100 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG--------- 100 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC---------
Confidence 489999999999999999998876554333 22211 12222222 389999999652
Q ss_pred CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhcCCCC-
Q 001395 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS- 964 (1086)
Q Consensus 891 ~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~~~l~- 964 (1086)
... ..|...++...+.+..+||+++..|.. ..+.|.+ ||. .++.+..|+.++|.++++.+++..++.
T Consensus 101 --~~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 101 --FDE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred --CCH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 112 234555544444445566666655533 3678887 885 689999999999999999999876654
Q ss_pred CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 965 SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 965 ~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
.+..++.|++...+ +.+.+..+++.....+... ...||...++++++.+
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~---~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER---KSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhh
Confidence 44457888888875 4555555555555444443 3568988888888664
No 301
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=6.2e-10 Score=126.58 Aligned_cols=179 Identities=18% Similarity=0.276 Sum_probs=126.9
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc----------EEEEeC
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------FLAVKG 842 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~----------fi~v~~ 842 (1086)
.|++|+|++.+++.++..+.. -+.+..+||+||+|+||+++|.++|+.+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 589999999999999999873 2456789999999999999999999875221 112222
Q ss_pred Cccccc-----cccc--------------------cHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCc
Q 001395 843 PELFSK-----WVGE--------------------SEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSV 893 (1086)
Q Consensus 843 sel~~~-----~vGe--------------------se~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~ 893 (1086)
+|+.-- .-|. .-..+|++...+. .+...|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 332200 0011 1234566655543 245679999999965
Q ss_pred cHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 001395 894 SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELA 973 (1086)
Q Consensus 894 ~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La 973 (1086)
.....|.||+.|+.. . +.++|.+|+.++.|-|.+.+ |+ ..+.|++++.++..++++........ +.+...++
T Consensus 137 ~~~aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEP--G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 567899999999864 3 45677888899999999998 87 58899999999999988876432211 22357788
Q ss_pred HHcCCCcHHHH
Q 001395 974 CLSEGCTGADI 984 (1086)
Q Consensus 974 ~~t~g~sgadl 984 (1086)
..+.|-.+..+
T Consensus 209 ~~a~Gs~~~al 219 (314)
T PRK07399 209 ALAQGSPGAAI 219 (314)
T ss_pred HHcCCCHHHHH
Confidence 88888444433
No 302
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.11 E-value=1.7e-09 Score=127.16 Aligned_cols=150 Identities=18% Similarity=0.266 Sum_probs=95.0
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--cEEEEeC-----Ccccc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKG-----PELFS 847 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~--~fi~v~~-----sel~~ 847 (1086)
..++|.+++++.+...+. ...++||+||||||||++|++++...+. +|..+.+ +++++
T Consensus 20 ~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 446788888777665543 3567999999999999999999987643 4443333 23333
Q ss_pred ccccccHHHH--HHHHHHHHhc---CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------cCCCE
Q 001395 848 KWVGESEKAV--RSLFAKARAN---APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNV 914 (1086)
Q Consensus 848 ~~vGese~~i--r~lf~~A~~~---~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------~~~~v 914 (1086)
.. +-... ...|.....+ ...+||+|||.. .....++.||..|+... +..-.
T Consensus 85 ~l---~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r-------------asp~~QsaLLeam~Er~~t~g~~~~~lp~r 148 (498)
T PRK13531 85 PL---SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK-------------AGPAILNTLLTAINERRFRNGAHEEKIPMR 148 (498)
T ss_pred cH---HHhhhhhcCchhhhcCCccccccEEeeccccc-------------CCHHHHHHHHHHHHhCeEecCCeEEeCCCc
Confidence 21 00000 1122222211 233999999984 47889999999994321 11124
Q ss_pred EEEEecCCCCC---CChhhhCCCCcceEeecCCCC-HHHHHHHHHHH
Q 001395 915 TVIAATNRPDK---IDPALLRPGRFDRLLYVGPPN-ETDREEIFRIH 957 (1086)
Q Consensus 915 ~VI~aTN~p~~---lD~aLlrpgRFd~~I~~~~P~-~~eR~~Il~~~ 957 (1086)
++++|||.... ..++++. ||-..+.+++|+ .++-.+++...
T Consensus 149 fiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 149 LLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 56667774432 3458888 997788999997 45557777654
No 303
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.11 E-value=1.2e-09 Score=114.93 Aligned_cols=183 Identities=16% Similarity=0.218 Sum_probs=119.7
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-C----CcEEEEeCCccc
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-G----LNFLAVKGPELF 846 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-~----~~fi~v~~sel~ 846 (1086)
..+.||+|.++....|.-.... ..-.+++|.|||||||||.+.++|+++ | -.++++|+++-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 4578999999999888766542 123459999999999999999999985 3 356778877642
Q ss_pred cccccccHHHHHHHHHHHHhc----CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC
Q 001395 847 SKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 922 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~----~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~ 922 (1086)
+- ...++--..|+.-+.. .-.||++||+|++ +...+..|-+.|+=. .....+..|+|.
T Consensus 91 GI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-------------T~gAQQAlRRtMEiy--S~ttRFalaCN~ 152 (333)
T KOG0991|consen 91 GI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-------------TAGAQQALRRTMEIY--SNTTRFALACNQ 152 (333)
T ss_pred cc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchh-------------hhHHHHHHHHHHHHH--cccchhhhhhcc
Confidence 21 1122222344443332 2349999999976 455667777777633 335678889999
Q ss_pred CCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 923 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 923 p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
.+.|-+.+.+ |+. ++.|...+..+.+.-+....+...+. .+.-++.+...++| |+++.++...
T Consensus 153 s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnLQ 216 (333)
T KOG0991|consen 153 SEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNLQ 216 (333)
T ss_pred hhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHHH
Confidence 9998777777 664 33444444444444333333333332 23457888888888 9988887644
No 304
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.11 E-value=7.9e-10 Score=137.06 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=133.6
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-------------------
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------------------- 833 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~------------------- 833 (1086)
.|.+|+|++.++..|.-....+ ...||||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999999998776554421 12469999999999999999999887
Q ss_pred ----------------CCcEEEEeCCcccccccccc--HHHH--------HHHHHHHHhcCCeEEEEecCchhhhhcCCC
Q 001395 834 ----------------GLNFLAVKGPELFSKWVGES--EKAV--------RSLFAKARANAPSIIFFDEIDGLAAIRGKE 887 (1086)
Q Consensus 834 ----------------~~~fi~v~~sel~~~~vGes--e~~i--------r~lf~~A~~~~p~ILflDEid~L~~~r~~~ 887 (1086)
..+|+.+.........+|.. ++.+ ..++.. ....|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhC-------
Confidence 35677665543322333321 1111 011111 23359999999965
Q ss_pred CCCCCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCC-CCCChhhhCCCCcceEeecCCCC-HHHHHHHH
Q 001395 888 SDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRP-DKIDPALLRPGRFDRLLYVGPPN-ETDREEIF 954 (1086)
Q Consensus 888 ~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p-~~lD~aLlrpgRFd~~I~~~~P~-~~eR~~Il 954 (1086)
...+++.|+..|+... ...+++||+++|.. ..+.++|+. ||+..|.++.+. .+++.+++
T Consensus 139 ------~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 139 ------DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 6788999999997431 12358899988854 357889999 999888888765 56777777
Q ss_pred HHHHhcC--C---------------------------C-CCcccHHHHHHHcC--CC-cHHHHHHHHHHHHHHHHHHhcC
Q 001395 955 RIHLRKI--P---------------------------C-SSDVNIRELACLSE--GC-TGADISLICREAAISAIEENLD 1001 (1086)
Q Consensus 955 ~~~l~~~--~---------------------------l-~~d~~l~~La~~t~--g~-sgadl~~l~~~A~~~A~~~~~~ 1001 (1086)
+...... + + ..+..++.++..+. |. +.+....+++-|...|..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g-- 288 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDG-- 288 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC--
Confidence 6533200 0 0 01111233333332 33 23444456666655555554
Q ss_pred CCCCCHHHHHHHHHhh
Q 001395 1002 ASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 1002 ~~~It~~d~~~al~~~ 1017 (1086)
...|+.+|+..|+.-+
T Consensus 289 r~~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 289 RRRVTAEDVREAAELV 304 (633)
T ss_pred CCcCCHHHHHHHHHHH
Confidence 5679999999888654
No 305
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.10 E-value=1.5e-09 Score=129.38 Aligned_cols=172 Identities=23% Similarity=0.343 Sum_probs=121.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHH--hh--cCCCeEEEEccchhh
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS--AS--QSAPAVVFIDELDAI 515 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~--a~--~~~P~ILfIDEiD~l 515 (1086)
+.++.+-+||+||||-||||||+.+|++.|+.+++||++|-.+.. ....++..+.+. +. ...|..|+|||||--
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 445677788999999999999999999999999999999875432 223333333332 11 257999999999833
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhcc--c----cC----------C---CeeEEeccCCCCCCCccccCCCCcceeeehh
Q 001395 516 APARKDGGEELSQRMVATLLNLMDGV--C----RT----------D---GVLVIAATNRPDSIEPALRRPGRLDREIEID 576 (1086)
Q Consensus 516 ~~~r~~~~~~~~~rv~~~Ll~lLd~l--~----~~----------~---~viVIatTN~~d~idpaL~r~GRfdr~I~i~ 576 (1086)
.+.++..++.++..- . .. . ..-||+.||.... |+||.---|-..|.|
T Consensus 400 -----------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f- 465 (877)
T KOG1969|consen 400 -----------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAF- 465 (877)
T ss_pred -----------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEe-
Confidence 255667777776521 1 00 0 1468999997654 666543346666666
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 577 MSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 577 l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
.+|......+-|+..+...+...+...+..|++.+++ ||+.-++....-+.
T Consensus 466 -------------~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 466 -------------VPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred -------------cCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 8888888888899888887777778888888888776 77776665554444
No 306
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.09 E-value=2.3e-09 Score=131.86 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHhccc-------------------cCCCEEEEEecCCC--CCCChhhhCCCCcc---eEeecCC--C-C
Q 001395 894 SDRVMSQLLVELDGLH-------------------QRVNVTVIAATNRP--DKIDPALLRPGRFD---RLLYVGP--P-N 946 (1086)
Q Consensus 894 ~~~v~~~LL~~Ld~~~-------------------~~~~v~VI~aTN~p--~~lD~aLlrpgRFd---~~I~~~~--P-~ 946 (1086)
....+..|++.|+... -..++.||+++|.. ..+|++|++ ||+ ..++|+. | +
T Consensus 230 ~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~ 307 (608)
T TIGR00764 230 PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDT 307 (608)
T ss_pred CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCC
Confidence 4567888888885321 12368899999875 568999999 998 5566642 3 3
Q ss_pred HHHHHHHHHHH---HhcCCCCCccc---HHHHHH----HcC-----CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 001395 947 ETDREEIFRIH---LRKIPCSSDVN---IRELAC----LSE-----GCTGADISLICREAAISAIEENLDASRITMQHLK 1011 (1086)
Q Consensus 947 ~~eR~~Il~~~---l~~~~l~~d~~---l~~La~----~t~-----g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~ 1011 (1086)
.+.|.++.+.. +++.+.....+ +..+.+ .++ -.+.++|.++|++|...|..+ ....|+.+|+.
T Consensus 308 ~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~--~~~~I~~ehV~ 385 (608)
T TIGR00764 308 PENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSS--GKVYVTAEHVL 385 (608)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhc--CCceecHHHHH
Confidence 45555554433 23332122222 333332 111 123689999999997666555 35689999999
Q ss_pred HHHHhh
Q 001395 1012 TAIRHV 1017 (1086)
Q Consensus 1012 ~al~~~ 1017 (1086)
+|++..
T Consensus 386 ~Ai~~~ 391 (608)
T TIGR00764 386 KAKKLA 391 (608)
T ss_pred HHHHHH
Confidence 998764
No 307
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.08 E-value=8.4e-10 Score=126.02 Aligned_cols=159 Identities=21% Similarity=0.321 Sum_probs=99.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-------C--cEEEEccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-------V--NLFTVNGP 478 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-------~--~~i~I~~s 478 (1086)
..|++|.|++++++.+.-....+ ...++||+|+||||||++|+++++.+. . ++..+.+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~ 72 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDC 72 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCC
Confidence 34689999999888776433222 125799999999999999999999883 2 22211110
Q ss_pred -cc--------ccc---------------cchh--hHHHH---HHHHHH--hhcCCCeEEEEccchhhccCCCCCCchhH
Q 001395 479 -EV--------VSQ---------------NYGE--SEQAL---HEVFDS--ASQSAPAVVFIDELDAIAPARKDGGEELS 527 (1086)
Q Consensus 479 -~l--------~s~---------------~~Ge--se~~l---~~vf~~--a~~~~P~ILfIDEiD~l~~~r~~~~~~~~ 527 (1086)
+. ... .+|. .++.+ ...|+. .......+||+||++.+ .
T Consensus 73 ~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-----------~ 141 (334)
T PRK13407 73 PEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-----------E 141 (334)
T ss_pred cccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-----------C
Confidence 00 000 1110 00000 001111 00011249999999887 4
Q ss_pred HHHHHHHHHHhhccc-----------cCCCeeEEeccCCCC-CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCH-
Q 001395 528 QRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSP- 594 (1086)
Q Consensus 528 ~rv~~~Ll~lLd~l~-----------~~~~viVIatTN~~d-~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~- 594 (1086)
..++..|++.|+.-. ...++++|+++|..+ .+++++.. ||...+.+ +.|..
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v--------------~~~~~~ 205 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEV--------------RSPRDV 205 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEc--------------CCCCcH
Confidence 677888888886532 224688999999755 57788888 99888887 65655
Q ss_pred HHHHHHHHHHH
Q 001395 595 AQRLEILHALL 605 (1086)
Q Consensus 595 ~eR~~IL~~~l 605 (1086)
++|.+|++...
T Consensus 206 ~e~~~il~~~~ 216 (334)
T PRK13407 206 ETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHhh
Confidence 88889998743
No 308
>PRK09087 hypothetical protein; Validated
Probab=99.08 E-value=9.5e-10 Score=119.55 Aligned_cols=153 Identities=22% Similarity=0.314 Sum_probs=104.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG 523 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~ 523 (1086)
...++|+||+|+|||+|++++++..+..++.. .++. ..++..... .+|+|||++.+. .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~-----------~~~~~~~~~---~~l~iDDi~~~~------~ 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIG-----------SDAANAAAE---GPVLIEDIDAGG------F 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcc-----------hHHHHhhhc---CeEEEECCCCCC------C
Confidence 44599999999999999999998876554332 2221 112222222 389999999762 1
Q ss_pred chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC---CccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHH
Q 001395 524 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEI 600 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i---dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~I 600 (1086)
. ...|..+++.+...+..+||+++..+..+ .+.+++ |+..-..+++ ..|+.++|.+|
T Consensus 102 ~------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l------------~~pd~e~~~~i 161 (226)
T PRK09087 102 D------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEI------------GEPDDALLSQV 161 (226)
T ss_pred C------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeec------------CCCCHHHHHHH
Confidence 1 13466777666666677777776655533 577887 7764443322 99999999999
Q ss_pred HHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 601 LHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 601 L~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
++..+...+..++++.++.|+++..+ +.+.+..++...
T Consensus 162 L~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L 199 (226)
T PRK09087 162 IFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRL 199 (226)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 99999988888999999999998875 333333333333
No 309
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.9e-09 Score=122.24 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=136.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----cEEEEcccccccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----NLFTVNGPEVVSQNY 485 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~-----~~i~I~~s~l~s~~~ 485 (1086)
+.+.+.+.++.++..++... +.-..|.++++|||||||||++++.+++++.- .+++|||....+.|.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 35889999999999987666 22234556999999999999999999998743 389999977655421
Q ss_pred ---------------hhh-HHHHHHHHHHhhc-CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCee
Q 001395 486 ---------------GES-EQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVL 548 (1086)
Q Consensus 486 ---------------Ges-e~~l~~vf~~a~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~vi 548 (1086)
|.+ .+....+++.... ....||++||+|.|..+.. .++-.|+...+.. ..++.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~ 158 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVS 158 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEE
Confidence 111 1222333333222 4556999999999974322 3444555444443 45688
Q ss_pred EEeccCCCC---CCCccccCCCCcc-eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC--ccccchHHHHHHHH
Q 001395 549 VIAATNRPD---SIEPALRRPGRLD-REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM--EHSLLDSEVEYLSM 622 (1086)
Q Consensus 549 VIatTN~~d---~idpaL~r~GRfd-r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~--~~~l~d~~l~~La~ 622 (1086)
+|+.+|..+ .+|+.+.+ +|. .+|.| ++++.+|..+|++...... ...+++..++.+|.
T Consensus 159 vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F--------------~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~ 222 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKS--SLGPSEIVF--------------PPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAA 222 (366)
T ss_pred EEEEeccHHHHHHhhhhhhh--ccCcceeee--------------CCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 999998764 67777776 332 23445 9999999999999887642 23456666665554
Q ss_pred H---cCCCcHHHHHHHHHHHHHHHHHHhccc
Q 001395 623 A---THGFVGADLAALCNEAALVCLRRYSKI 650 (1086)
Q Consensus 623 ~---t~GfsgaDL~~L~~eA~~~a~rr~~~~ 650 (1086)
. .+| ..+-...+|+.|+..|-++....
T Consensus 223 ~~a~~~G-DAR~aidilr~A~eiAe~~~~~~ 252 (366)
T COG1474 223 LVAAESG-DARKAIDILRRAGEIAEREGSRK 252 (366)
T ss_pred HHHHcCc-cHHHHHHHHHHHHHHHHhhCCCC
Confidence 4 344 44445568888888887665443
No 310
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.07 E-value=2.6e-09 Score=120.63 Aligned_cols=93 Identities=25% Similarity=0.364 Sum_probs=58.2
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC------------CCCCChhhhCCCCc
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR------------PDKIDPALLRPGRF 936 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~------------p~~lD~aLlrpgRF 936 (1086)
|.||||||+|.| +-+..+-|-+.|+.- ..=+||+|||| |+-|+..|+. |+
T Consensus 279 pGVLFIDEvHmL-------------DiEcFsfLnralEs~---~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl 340 (398)
T PF06068_consen 279 PGVLFIDEVHML-------------DIECFSFLNRALESE---LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL 340 (398)
T ss_dssp E-EEEEESGGGS-------------BHHHHHHHHHHHTST---T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE
T ss_pred cceEEecchhhc-------------cHHHHHHHHHHhcCC---CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc
Confidence 889999999976 456666676777642 23478888885 4567888988 87
Q ss_pred ceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcCCCc
Q 001395 937 DRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCT 980 (1086)
Q Consensus 937 d~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~t~g~s 980 (1086)
.+|...+++.++..+|++..++...+.-+ ..++.|+......+
T Consensus 341 -lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~S 384 (398)
T PF06068_consen 341 -LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETS 384 (398)
T ss_dssp -EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-
T ss_pred -EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhcc
Confidence 58888999999999999999987766522 23555555544333
No 311
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.4e-09 Score=122.65 Aligned_cols=192 Identities=16% Similarity=0.262 Sum_probs=138.7
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
...++||||.|.|||+|++|++++. +..++.+...+++..++-.....--+-|+.-. .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4459999999999999999998875 34677777777766655443333334555555 4459999999988542
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHH
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l 958 (1086)
++.+..+...+..+...++.+|+.+-..|.. +.+.|.+ ||. .++.+.+|+.+.|..||+...
T Consensus 191 -----------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 191 -----------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred -----------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 3456667777766665656566665555655 4688888 886 588899999999999999988
Q ss_pred hcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 001395 959 RKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 959 ~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p 1019 (1086)
+..++. .+.-+..+|..... +.++++.+++.....+...+ ..||.....++++.+..
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~---~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK---RAITIDLVKEILKDLLR 315 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC---ccCcHHHHHHHHHHhhc
Confidence 777666 33446677777664 78899998888777775554 46888888877776544
No 312
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.06 E-value=1.2e-10 Score=120.76 Aligned_cols=136 Identities=26% Similarity=0.424 Sum_probs=88.7
Q ss_pred cccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc-----
Q 001395 777 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----- 848 (1086)
Q Consensus 777 i~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~----- 848 (1086)
|+|.+...+++++.+... ...+..|||+|++||||+++|++|.... +.||+.++|+.+-..
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 467777777777766542 2345779999999999999999998754 589999999775221
Q ss_pred ccccc----H---HHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCC
Q 001395 849 WVGES----E---KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 912 (1086)
Q Consensus 849 ~vGes----e---~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~ 912 (1086)
..|.. . .....+|+.|..+ +||||||+.| +..+|..|++.|+... ...
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh-------------HHHHHHHHHHHHhhchhccccccccccc
Confidence 11111 0 1112456666554 9999999965 6789999999997432 123
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeec
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYV 942 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~ 942 (1086)
++.||++|+.+-. .++..|+|...+|+
T Consensus 134 ~~RiI~st~~~l~---~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 134 DVRIIASTSKDLE---ELVEQGRFREDLYY 160 (168)
T ss_dssp -EEEEEEESS-HH---HHHHTTSS-HHHHH
T ss_pred cceEEeecCcCHH---HHHHcCCChHHHHH
Confidence 7999999997533 55666888765554
No 313
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.05 E-value=2.5e-09 Score=112.84 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=98.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc------------------------EEEEcccccccccchhhHHHHHHHHHH
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVN------------------------LFTVNGPEVVSQNYGESEQALHEVFDS 498 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~------------------------~i~I~~s~l~s~~~Gese~~l~~vf~~ 498 (1086)
.+..+||+||+|+|||++|+.+++.+... +..+... .... .-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~--~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSI--KVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcC--CHHHHHHHHHH
Confidence 45669999999999999999999987432 2222111 0011 12345555554
Q ss_pred hhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeee
Q 001395 499 ASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 574 (1086)
Q Consensus 499 a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~ 574 (1086)
+.. ....|++|||+|.+. ......|+..|+.. .....+|++|+.+..+.+++++ |+. .+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~-~~~ 151 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ-VLP 151 (188)
T ss_pred HccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-Eee
Confidence 432 345699999999883 34566788888773 3456677778888899999988 663 666
Q ss_pred hhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 575 IDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 575 i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
+ ++|+.++..++++.. + +++..++.++..+.|
T Consensus 152 ~--------------~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 152 F--------------PPLSEEALLQWLIRQ----G--ISEEAAELLLALAGG 183 (188)
T ss_pred C--------------CCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCC
Confidence 6 899999998888775 2 456677777777766
No 314
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.05 E-value=2.1e-09 Score=128.91 Aligned_cols=208 Identities=22% Similarity=0.281 Sum_probs=126.0
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC------------------
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------------------ 834 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~------------------ 834 (1086)
.|+|+.|++.+++.+.-.+ ....+++|+||||||||++|++++..+.
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 6788999988876554433 2345699999999999999999986421
Q ss_pred ----------CcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHH
Q 001395 835 ----------LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 904 (1086)
Q Consensus 835 ----------~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~ 904 (1086)
.||..+..+......+|.....-...+..| ...||||||++.+ ...++..|++.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-------------~~~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-------------KRSVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-------------CHHHHHHHHHH
Confidence 122222221111111121110011123333 3359999999954 67888889888
Q ss_pred Hhccc-----------cCCCEEEEEecCCC------C-----------------CCChhhhCCCCcceEeecCCCCHHH-
Q 001395 905 LDGLH-----------QRVNVTVIAATNRP------D-----------------KIDPALLRPGRFDRLLYVGPPNETD- 949 (1086)
Q Consensus 905 Ld~~~-----------~~~~v~VI~aTN~p------~-----------------~lD~aLlrpgRFd~~I~~~~P~~~e- 949 (1086)
|+... ...++.+|+++|.- + .|...|+. |||-.+.++.++.++
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 86432 12478999999852 1 47788888 999999998775543
Q ss_pred ------------HHHHHHHH------HhcC---CCCCccc-------------HHH-H--HHHcCCCcHHHHHHHHHHHH
Q 001395 950 ------------REEIFRIH------LRKI---PCSSDVN-------------IRE-L--ACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 950 ------------R~~Il~~~------l~~~---~l~~d~~-------------l~~-L--a~~t~g~sgadl~~l~~~A~ 992 (1086)
|..+.+.+ ++.. .+..... ... + +....++|.|....+++-|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 22232211 1111 1111111 111 1 11223578888888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHH
Q 001395 993 ISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 993 ~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
..|-.+. ...|+.+|+.+|+.
T Consensus 477 TiAdL~g--~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKE--EKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcC--CCCCCHHHHHHHHh
Confidence 8876665 56799999998874
No 315
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.04 E-value=5.2e-10 Score=128.42 Aligned_cols=148 Identities=32% Similarity=0.412 Sum_probs=100.8
Q ss_pred cccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc--ccccccH
Q 001395 777 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS--KWVGESE 854 (1086)
Q Consensus 777 i~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~--~~vGese 854 (1086)
++|.++++..+...+. ..+++||.||||||||++|+++|..++.+|+.+.+..-+. ..+|...
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 5566666555444433 3467999999999999999999999999999999864321 1222211
Q ss_pred HHHH------------HHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcc----------ccCC
Q 001395 855 KAVR------------SLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL----------HQRV 912 (1086)
Q Consensus 855 ~~ir------------~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~----------~~~~ 912 (1086)
-..+ -+|...+ +|+|+|||+. ....+++.|+..|+.. .-..
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInr-------------a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR----VILLLDEINR-------------APPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc----eEEEEecccc-------------CCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 1111 0111111 4999999993 4678999999999752 1224
Q ss_pred CEEEEEecC-----CCCCCChhhhCCCCcceEeecCCC-CHHHHHHHHHHHH
Q 001395 913 NVTVIAATN-----RPDKIDPALLRPGRFDRLLYVGPP-NETDREEIFRIHL 958 (1086)
Q Consensus 913 ~v~VI~aTN-----~p~~lD~aLlrpgRFd~~I~~~~P-~~~eR~~Il~~~l 958 (1086)
..+||+|+| .-..+.+|+++ ||...++++.| ...+...++....
T Consensus 154 ~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 154 PFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred CCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCc
Confidence 677888888 44568999999 99888999999 4444444444433
No 316
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.7e-09 Score=124.03 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=110.4
Q ss_pred ccccccc-chhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc---------------
Q 001395 773 KWEDVGG-QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN--------------- 836 (1086)
Q Consensus 773 ~~~di~G-~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~--------------- 836 (1086)
.|+.|.| ++.+++.|+..+.. -+.+..+||+||+|+|||++|+++|+..-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4888888 88899999888763 3456778999999999999999999875321
Q ss_pred ---------EEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHH
Q 001395 837 ---------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 903 (1086)
Q Consensus 837 ---------fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~ 903 (1086)
+..+... ++. -.-..+|++.+.+. .+...|++|||+|.+ +....|.||+
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHH
Confidence 2222111 110 12345666665543 234569999999965 6778999999
Q ss_pred HHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHH
Q 001395 904 ELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI 956 (1086)
Q Consensus 904 ~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~ 956 (1086)
.|+. +..++++|++|+.+..|-|++.+ |+ .+++|++|+.++..+.++.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9995 45688888899999999999998 77 5889999999888777753
No 317
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=4.9e-09 Score=119.54 Aligned_cols=171 Identities=14% Similarity=0.213 Sum_probs=117.5
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------EEEEcccccc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------LFTVNGPEVV 481 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~--------~i~I~~s~l~ 481 (1086)
|++|.|++.+++.|+..+... ..+..+||+||+|+|||++|+++|+.+-+. +..+... -
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~ 69 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--N 69 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--c
Confidence 578999999999998887544 234568999999999999999999976332 2233221 0
Q ss_pred cccchhhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 482 SQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 482 s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
+..+ .-..++.+.+.+ ......|++||++|.+ .....+.|+..|++ ..+++++|.+|+.++
T Consensus 70 ~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe--pp~~t~~il~~~~~~ 134 (313)
T PRK05564 70 KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE--PPKGVFIILLCENLE 134 (313)
T ss_pred CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC--CCCCeEEEEEeCChH
Confidence 1111 112355554432 2334569999999887 34566789999987 356677777778889
Q ss_pred CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcH
Q 001395 558 SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 629 (1086)
Q Consensus 558 ~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gfsg 629 (1086)
.+.|.+++ |+ ..+.+ +.|+.++....++.... ..++..++.++..+.|-.+
T Consensus 135 ~ll~TI~S--Rc-~~~~~--------------~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 135 QILDTIKS--RC-QIYKL--------------NRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred hCcHHHHh--hc-eeeeC--------------CCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 99999988 66 35666 88999888777765443 2355667777777666433
No 318
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.3e-09 Score=124.07 Aligned_cols=175 Identities=16% Similarity=0.276 Sum_probs=127.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
+...++||||.|.|||+|+++++++. +..++.+...++...++-.....-.+-|+.-. .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 56779999999999999999999876 34678888777766654433332233344433 335999999999964
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC---ccccCCCCcceeeehhhhhhhhhcccCCCCCCCH
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE---PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSP 594 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id---paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~ 594 (1086)
+ .+...++...++.+...++-+|+.+-..|..+. |.|++ ||.+-+.+++ .+|+.
T Consensus 190 k---------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I------------~~Pd~ 246 (408)
T COG0593 190 K---------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEI------------EPPDD 246 (408)
T ss_pred C---------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEee------------CCCCH
Confidence 3 233567777777777677766666666666554 78888 9988777655 99999
Q ss_pred HHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 595 AQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 595 ~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+.|..||+......+..+++..+..++.+... +.+++...+......+
T Consensus 247 e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a 294 (408)
T COG0593 247 ETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFA 294 (408)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999988654 4456555554444444
No 319
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.02 E-value=8.2e-11 Score=117.65 Aligned_cols=109 Identities=30% Similarity=0.441 Sum_probs=74.0
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc------cccccc---ccHHHHHHHHHHHHhcCCeEEEEecCchhh
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL------FSKWVG---ESEKAVRSLFAKARANAPSIIFFDEIDGLA 881 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel------~~~~vG---ese~~ir~lf~~A~~~~p~ILflDEid~L~ 881 (1086)
+|+|+||||||||++|+.+|..++.+++.+++... ++.|.- ...-.-..+...++ .++|+||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 48999999999999999999999999999998653 222221 10000000000111 5679999999943
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHhcccc-----------CC------CEEEEEecCCCC----CCChhhhCCCCc
Q 001395 882 AIRGKESDGVSVSDRVMSQLLVELDGLHQ-----------RV------NVTVIAATNRPD----KIDPALLRPGRF 936 (1086)
Q Consensus 882 ~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~-----------~~------~v~VI~aTN~p~----~lD~aLlrpgRF 936 (1086)
...++..|+..++...- .. +..||+|+|..+ .+++++++ ||
T Consensus 78 ------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 57788888888864321 11 389999999998 89999999 87
No 320
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.01 E-value=2.5e-09 Score=112.43 Aligned_cols=173 Identities=18% Similarity=0.258 Sum_probs=115.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CC----cEEEEcccccccc
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GV----NLFTVNGPEVVSQ 483 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-g~----~~i~I~~s~l~s~ 483 (1086)
.+.||+|.++.++++.-+.... .-.+++|.|||||||||-+.++|+++ |- .++++|+++-.+-
T Consensus 25 ~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 3579999999999998877554 23368999999999999999999986 32 4678888775433
Q ss_pred cchhhHHHHHHHHHHhhcC----CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC
Q 001395 484 NYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i 559 (1086)
. -...+++ .|.+-+-. .-.||++||+|++. ......|...|+-+... ..+..+||..+.|
T Consensus 93 D--vVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~t--tRFalaCN~s~KI 156 (333)
T KOG0991|consen 93 D--VVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSNT--TRFALACNQSEKI 156 (333)
T ss_pred H--HHHHHHH-HHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHccc--chhhhhhcchhhh
Confidence 1 1222333 34433222 22499999999883 33456677777765443 4577889988888
Q ss_pred CccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 560 EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 560 dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
-..+.+ |+. .+.+ ...+..+.+.-|....+..++.+.++.++.+.-..+|
T Consensus 157 iEPIQS--RCA-iLRy--------------sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 157 IEPIQS--RCA-ILRY--------------SKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhHHh--hhH-hhhh--------------cccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 777766 542 2222 4455555555555555566667777778777766665
No 321
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=1.9e-09 Score=104.98 Aligned_cols=123 Identities=35% Similarity=0.442 Sum_probs=82.3
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCc---EEEEeCCccccc--------------cccccHHHHHHHHHHHHhcCCeE
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKGPELFSK--------------WVGESEKAVRSLFAKARANAPSI 871 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~---fi~v~~sel~~~--------------~vGese~~ir~lf~~A~~~~p~I 871 (1086)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.++..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3468999999999999999999998765 888887654322 12334556778888998887899
Q ss_pred EEEecCchhhhhcCCCCCCCCccHHHHHHHHH-----HHhccccCCCEEEEEecCC-CCCCChhhhCCCCcceEeecCCC
Q 001395 872 IFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV-----ELDGLHQRVNVTVIAATNR-PDKIDPALLRPGRFDRLLYVGPP 945 (1086)
Q Consensus 872 LflDEid~L~~~r~~~~~~~~~~~~v~~~LL~-----~Ld~~~~~~~v~VI~aTN~-p~~lD~aLlrpgRFd~~I~~~~P 945 (1086)
||+||++.+.... ....... .........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE------------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH------------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999874321 1111110 1111123457888999986 3333444444 88888877654
No 322
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=127.62 Aligned_cols=134 Identities=26% Similarity=0.330 Sum_probs=88.8
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc------cccccc-cc----cHHHHHHHHHHHHhcCCeEEEEe
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE------LFSKWV-GE----SEKAVRSLFAKARANAPSIIFFD 875 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se------l~~~~v-Ge----se~~ir~lf~~A~~~~p~ILflD 875 (1086)
...+++||.|.||+|||++..|+|+..|...++++.++ +++.++ ++ ..=.-...+...+.+ .-+++|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLD 1618 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLD 1618 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEee
Confidence 45678999999999999999999999999999999876 233322 22 110111223333333 499999
Q ss_pred cCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc------------cCCCEEEEEecCCCC------CCChhhhCCCCcc
Q 001395 876 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------------QRVNVTVIAATNRPD------KIDPALLRPGRFD 937 (1086)
Q Consensus 876 Eid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~------------~~~~v~VI~aTN~p~------~lD~aLlrpgRFd 937 (1086)
|+. | .+..++.-|-..||.-. -+.+.+|++|-|.-+ .++..++. ||.
T Consensus 1619 EiN-L------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs 1683 (4600)
T COG5271 1619 EIN-L------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS 1683 (4600)
T ss_pred hhh-h------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh
Confidence 986 2 23445555555554321 123677777777543 47888888 995
Q ss_pred eEeecCCCCHHHHHHHHHHHH
Q 001395 938 RLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 938 ~~I~~~~P~~~eR~~Il~~~l 958 (1086)
+|++...+.++...|.....
T Consensus 1684 -vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1684 -VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred -eEEecccccchHHHHHHhhC
Confidence 77888888877777766544
No 323
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.00 E-value=2.7e-09 Score=103.93 Aligned_cols=123 Identities=31% Similarity=0.491 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEccccccccc--------------chhhHHHHHHHHHHhhcCCCeE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPEVVSQN--------------YGESEQALHEVFDSASQSAPAV 506 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~---~i~I~~s~l~s~~--------------~Gese~~l~~vf~~a~~~~P~I 506 (1086)
+..++|+||||||||++++.+|..+... ++.+++....... ..........+++.+....+.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5679999999999999999999998764 8888877654321 1234556677888888877899
Q ss_pred EEEccchhhccCCCCCCchhHHHHHHHH--HHHhhccccCCCeeEEeccCC-CCCCCccccCCCCcceeeeh
Q 001395 507 VFIDELDAIAPARKDGGEELSQRMVATL--LNLMDGVCRTDGVLVIAATNR-PDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 507 LfIDEiD~l~~~r~~~~~~~~~rv~~~L--l~lLd~l~~~~~viVIatTN~-~d~idpaL~r~GRfdr~I~i 575 (1086)
|||||++.+..... ....... ...........+..+|+++|. ....+..+++ |++..+.+
T Consensus 82 iiiDei~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 144 (148)
T smart00382 82 LILDEITSLLDAEQ-------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVL 144 (148)
T ss_pred EEEECCcccCCHHH-------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEe
Confidence 99999998853211 0000000 001111223456788888886 3344444544 78877766
No 324
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=4.5e-09 Score=120.26 Aligned_cols=153 Identities=18% Similarity=0.272 Sum_probs=109.5
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCC------------------------cEEEEeCCccccccccccHHHHHHHHH
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 862 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------------------~fi~v~~sel~~~~vGese~~ir~lf~ 862 (1086)
+.+..+||+||+|+|||++|+++|+.+.+ +++.+...+- ++ .-.-..+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 45677999999999999999999987643 2222221100 00 013456777766
Q ss_pred HHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcce
Q 001395 863 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 938 (1086)
Q Consensus 863 ~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~ 938 (1086)
.+.. +...|++|||+|.+ +....|.||+.|+. +..++++|.+|++++.+.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 6543 44669999999965 67889999999995 45689999999999999999999 885
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHH
Q 001395 939 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGAD 983 (1086)
Q Consensus 939 ~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgad 983 (1086)
.+.|++|+.++..+.+..... ...+.+...++..+.|-.+..
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLRA 200 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHHH
Confidence 689999999988888876432 122334456677777755543
No 325
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=7.6e-09 Score=119.96 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=116.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE-------------EE
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL-------------FT 474 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~-------------i~ 474 (1086)
..+++|+|++.+++.|++.+... +.+..+||+||+|+||+++|.++|+.+-+.- +.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~ 84 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA 84 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 34579999999999999888665 2355699999999999999999998773210 00
Q ss_pred Ec-------------ccccccc-----cchh------hHHHHHHHHHH----hhcCCCeEEEEccchhhccCCCCCCchh
Q 001395 475 VN-------------GPEVVSQ-----NYGE------SEQALHEVFDS----ASQSAPAVVFIDELDAIAPARKDGGEEL 526 (1086)
Q Consensus 475 I~-------------~s~l~s~-----~~Ge------se~~l~~vf~~----a~~~~P~ILfIDEiD~l~~~r~~~~~~~ 526 (1086)
+. .+++.-- ..|. .-..++.+.+. .....+.|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m----------- 153 (365)
T PRK07471 85 IDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM----------- 153 (365)
T ss_pred CCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----------
Confidence 00 0011000 0000 01224444433 23356789999999988
Q ss_pred HHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHc
Q 001395 527 SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLS 606 (1086)
Q Consensus 527 ~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~ 606 (1086)
.....+.|+..++.. .+++++|.+|+.++.+.+.+++ |+. .+.+ ++|+.++..++|.....
T Consensus 154 ~~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l--------------~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 154 NANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRL--------------RPLAPEDVIDALAAAGP 214 (365)
T ss_pred CHHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEEC--------------CCCCHHHHHHHHHHhcc
Confidence 356677888888863 4567888899999999888887 763 5666 99999999988887532
Q ss_pred cCccccchHHHHHHHHHcCCC
Q 001395 607 GMEHSLLDSEVEYLSMATHGF 627 (1086)
Q Consensus 607 ~~~~~l~d~~l~~La~~t~Gf 627 (1086)
. ..+..+..++..+.|-
T Consensus 215 ~----~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 215 D----LPDDPRAALAALAEGS 231 (365)
T ss_pred c----CCHHHHHHHHHHcCCC
Confidence 1 2333345666666663
No 326
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.99 E-value=5e-10 Score=112.00 Aligned_cols=109 Identities=28% Similarity=0.438 Sum_probs=72.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc--cchhhHHH-H------HHHHHHhhcCCCeEEEEccchhhc
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ--NYGESEQA-L------HEVFDSASQSAPAVVFIDELDAIA 516 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~--~~Gese~~-l------~~vf~~a~~~~P~ILfIDEiD~l~ 516 (1086)
+|+|+||||||||++|+.+|+.++.+++.++++..... ..|...-. - ..+.+.+ ..++|+||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 58999999999999999999999999998887664322 11111000 0 0000001 14579999999876
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhccc-----------cCC------CeeEEeccCCCC----CCCccccCCCCc
Q 001395 517 PARKDGGEELSQRMVATLLNLMDGVC-----------RTD------GVLVIAATNRPD----SIEPALRRPGRL 569 (1086)
Q Consensus 517 ~~r~~~~~~~~~rv~~~Ll~lLd~l~-----------~~~------~viVIatTN~~d----~idpaL~r~GRf 569 (1086)
...++..|+.+++.-. ... ++.+|+|+|+.+ .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 4677788888876521 111 389999999988 88999988 76
No 327
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.99 E-value=8.7e-10 Score=130.71 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.+|+.||+-+ ..+..++.+.++.|..+...-+..+|+.||+...
T Consensus 437 RvaIARALa~~P~lli~DEp~S------------aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v 492 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVS------------ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV 492 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCcc------------ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 6678888889999999999874 3456778888888888777789999999998754
No 328
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.99 E-value=2.6e-08 Score=110.80 Aligned_cols=216 Identities=21% Similarity=0.290 Sum_probs=136.8
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEe
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVK 841 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~ 841 (1086)
.-.|=.-..-..+.+.|.+.+.+| ......++||+|++|.|||++++..+... ..|++.+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq 102 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ 102 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe
Confidence 334533333334444455555554 22345669999999999999999998653 35788888
Q ss_pred CCcccc--------------cc-ccc-cHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHH
Q 001395 842 GPELFS--------------KW-VGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 905 (1086)
Q Consensus 842 ~sel~~--------------~~-vGe-se~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~L 905 (1086)
++.--+ .+ ... ..+.-..+....+..++.+|+|||+|.++.. +.+-+.++++.|
T Consensus 103 ~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG----------s~~~qr~~Ln~L 172 (302)
T PF05621_consen 103 MPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG----------SYRKQREFLNAL 172 (302)
T ss_pred cCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc----------cHHHHHHHHHHH
Confidence 754211 01 011 1222334455566777889999999997532 234466667777
Q ss_pred hccccCCCEEEEEecCCC----CCCChhhhCCCCcceEeecCCCCH-HHHHHHHHHHHhcCCCCCcc-----c-HHHHHH
Q 001395 906 DGLHQRVNVTVIAATNRP----DKIDPALLRPGRFDRLLYVGPPNE-TDREEIFRIHLRKIPCSSDV-----N-IRELAC 974 (1086)
Q Consensus 906 d~~~~~~~v~VI~aTN~p----~~lD~aLlrpgRFd~~I~~~~P~~-~eR~~Il~~~l~~~~l~~d~-----~-l~~La~ 974 (1086)
..+...-++.+|++.... -.-|+.+-+ ||+ .+.+|.-.. ++...++..+-+.+|+.... + ...+-.
T Consensus 173 K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~ 249 (302)
T PF05621_consen 173 KFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHE 249 (302)
T ss_pred HHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 666555566666554321 223788888 996 444554443 44566777777777665222 2 345667
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 001395 975 LSEGCTGADISLICREAAISAIEENLDASRITMQHLKT 1012 (1086)
Q Consensus 975 ~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~ 1012 (1086)
.++|..| ++..+++.|+..|++.+ .+.||.+++..
T Consensus 250 ~s~G~iG-~l~~ll~~aA~~AI~sG--~E~It~~~l~~ 284 (302)
T PF05621_consen 250 RSEGLIG-ELSRLLNAAAIAAIRSG--EERITREILDK 284 (302)
T ss_pred HcCCchH-HHHHHHHHHHHHHHhcC--CceecHHHHhh
Confidence 8888776 89999999999999987 66799888865
No 329
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.98 E-value=4.4e-09 Score=120.47 Aligned_cols=159 Identities=18% Similarity=0.298 Sum_probs=101.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEE------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFT------ 474 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~-------~~i~------ 474 (1086)
..|++|+|+++.|..|.-.+..+ ...++||.|++|||||++||++++.+.. +|..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~ 81 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPE 81 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChh
Confidence 45789999999999888776555 1247999999999999999999876521 1210
Q ss_pred Ecccccccc-------------------cchhhHHHH------HHHHHHhh---------cCCCeEEEEccchhhccCCC
Q 001395 475 VNGPEVVSQ-------------------NYGESEQAL------HEVFDSAS---------QSAPAVVFIDELDAIAPARK 520 (1086)
Q Consensus 475 I~~s~l~s~-------------------~~Gese~~l------~~vf~~a~---------~~~P~ILfIDEiD~l~~~r~ 520 (1086)
..+.++... -.|.++..+ ...|.... .....+||+||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL----- 156 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL----- 156 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-----
Confidence 000000000 011122211 11111110 111249999999988
Q ss_pred CCCchhHHHHHHHHHHHhhccc-----------cCCCeeEEeccCCCC-CCCccccCCCCcceeeehhhhhhhhhcccCC
Q 001395 521 DGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIDMSFLFSLLKNSP 588 (1086)
Q Consensus 521 ~~~~~~~~rv~~~Ll~lLd~l~-----------~~~~viVIatTN~~d-~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~ 588 (1086)
...++..|+..|+.-. ...++++|++.|..+ .+.+++.. ||...+.+
T Consensus 157 ------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l------------- 215 (350)
T CHL00081 157 ------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEI------------- 215 (350)
T ss_pred ------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeec-------------
Confidence 4567778888886411 124678888888765 57888888 89888887
Q ss_pred CCCCC-HHHHHHHHHHHH
Q 001395 589 AAVPS-PAQRLEILHALL 605 (1086)
Q Consensus 589 ~~~Pd-~~eR~~IL~~~l 605 (1086)
..|+ .+.+.+|++...
T Consensus 216 -~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 216 -RTVKDPELRVKIVEQRT 232 (350)
T ss_pred -CCCCChHHHHHHHHhhh
Confidence 6676 588888888753
No 330
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.4e-09 Score=115.94 Aligned_cols=84 Identities=27% Similarity=0.403 Sum_probs=62.8
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------cCCCEEEEEec----CCCCCCChhhhCCCCc
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRF 936 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------~~~~v~VI~aT----N~p~~lD~aLlrpgRF 936 (1086)
-+|+||||||.++.+.+.++ .+-....++..||-.++|.. ..+++++|++- ..|..|-|.|. |||
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~-~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGG-PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred cCeEEEehhhHHHhcCCCCC-CCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 35999999999987654222 12234567888888887652 35678888875 46777778775 699
Q ss_pred ceEeecCCCCHHHHHHHHH
Q 001395 937 DRLLYVGPPNETDREEIFR 955 (1086)
Q Consensus 937 d~~I~~~~P~~~eR~~Il~ 955 (1086)
.-.+++...+.++...||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888874
No 331
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=2.4e-08 Score=110.96 Aligned_cols=189 Identities=18% Similarity=0.290 Sum_probs=116.8
Q ss_pred CcceeCCCCCcchHHHHHHHHHhC-CcEEE--EeCCc-----cc---ccccc-----ccH-H---HHHHH-HHHHHhcCC
Q 001395 811 GILMFGPPGCSKTLMARAVASEAG-LNFLA--VKGPE-----LF---SKWVG-----ESE-K---AVRSL-FAKARANAP 869 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~-~~fi~--v~~se-----l~---~~~vG-----ese-~---~ir~l-f~~A~~~~p 869 (1086)
-++|+||+|+||||+++.++.++. ..++. +-... +. ....| ... . .+... ........+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 388999999999999999998865 22221 11111 10 00111 111 1 11111 123345677
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-cCCCEEEEEecCCCCC---C-C---hhhhCCCCcceEee
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDK---I-D---PALLRPGRFDRLLY 941 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-~~~~v~VI~aTN~p~~---l-D---~aLlrpgRFd~~I~ 941 (1086)
.+|+|||++.+. ...+..+ ..|-... .....+.|+.+..++. + + ..+.+ |+...++
T Consensus 125 ~vliiDe~~~l~-------------~~~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLT-------------PELLEEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCC-------------HHHHHHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 899999999652 2223332 2222111 1122222233333332 1 1 12444 7777889
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 942 VGPPNETDREEIFRIHLRKIPC-----SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 942 ~~~P~~~eR~~Il~~~l~~~~l-----~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
+++.+.++..+++...++..+. -.+..++.|.+.+.|+.. .|..+|..+...|..+. ...|+.++++.++..
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~--~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE--KREIGGEEVREVIAE 265 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHH
Confidence 9999999999999988875432 234568888999999765 59999999999988876 467999999999887
Q ss_pred hC
Q 001395 1017 VQ 1018 (1086)
Q Consensus 1017 ~~ 1018 (1086)
++
T Consensus 266 ~~ 267 (269)
T TIGR03015 266 ID 267 (269)
T ss_pred hh
Confidence 65
No 332
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.97 E-value=4.7e-09 Score=122.67 Aligned_cols=121 Identities=25% Similarity=0.431 Sum_probs=78.6
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCC-------cEEEEeC----Ccccccc----cccc--HHHHHHHHHHHHh--cCC
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGL-------NFLAVKG----PELFSKW----VGES--EKAVRSLFAKARA--NAP 869 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~-------~fi~v~~----sel~~~~----vGes--e~~ir~lf~~A~~--~~p 869 (1086)
.++++|+||||||||++|+.+|..+.. .++.+.. .+++..+ +|.. .....++...|+. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 567999999999999999999988642 1233322 1222222 1111 1223445566654 357
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhc--------------------cccCCCEEEEEecCCCC----C
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG--------------------LHQRVNVTVIAATNRPD----K 925 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~--------------------~~~~~~v~VI~aTN~p~----~ 925 (1086)
+|||||||++-. ..++...++..|+. +....++.||+|.|..+ .
T Consensus 274 ~vliIDEINRan------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 274 YVFIIDEINRAN------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred cEEEEehhhccC------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 999999999532 24455555555542 12245899999999987 7
Q ss_pred CChhhhCCCCcceEeecCC
Q 001395 926 IDPALLRPGRFDRLLYVGP 944 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~ 944 (1086)
+|.||+| ||. .|.+.+
T Consensus 342 lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 342 VDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccHHHHh--hhh-eEEecC
Confidence 9999999 995 555553
No 333
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.96 E-value=9.1e-09 Score=117.85 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=97.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-------CcEE--------
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-------VNLF-------- 473 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-------~~~i-------- 473 (1086)
.|..|+|+++.|..+.-.+..+ ...+++|.|+||+||||+++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 3578999999887765443333 135799999999999999999998762 2111
Q ss_pred -EEccc-------------------cccc-----ccchhh--HHHH--------HHHHHHhhcCCCeEEEEccchhhccC
Q 001395 474 -TVNGP-------------------EVVS-----QNYGES--EQAL--------HEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 474 -~I~~s-------------------~l~s-----~~~Ges--e~~l--------~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
..+|. ++-. ...|.. ++.+ ..++..| ...+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC---
Confidence 00000 1100 111211 1100 0111122 2349999999987
Q ss_pred CCCCCchhHHHHHHHHHHHhhccc-----------cCCCeeEEeccCCCC-CCCccccCCCCcceeeehhhhhhhhhccc
Q 001395 519 RKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIDMSFLFSLLKN 586 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lLd~l~-----------~~~~viVIatTN~~d-~idpaL~r~GRfdr~I~i~l~~~~~~~~~ 586 (1086)
...++..|++.|+.-. ...++++|+++|..+ .+.+++.. ||.-.+.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l----------- 202 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEI----------- 202 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEEC-----------
Confidence 3567788888886421 123578888888655 67888888 99887777
Q ss_pred CCCCCCCH-HHHHHHHHHH
Q 001395 587 SPAAVPSP-AQRLEILHAL 604 (1086)
Q Consensus 587 v~~~~Pd~-~eR~~IL~~~ 604 (1086)
+.|.. ++|.+|++..
T Consensus 203 ---~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 203 ---RTVRDVELRVEIVERR 218 (337)
T ss_pred ---CCCCCHHHHHHHHHhh
Confidence 66665 8888888874
No 334
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.6e-09 Score=114.13 Aligned_cols=81 Identities=33% Similarity=0.585 Sum_probs=61.3
Q ss_pred EEEEccchhhccCCCCCCchh-HHHHHHHHHHHhhccc--------cCCCeeEEecc----CCCCCCCccccCCCCccee
Q 001395 506 VVFIDELDAIAPARKDGGEEL-SQRMVATLLNLMDGVC--------RTDGVLVIAAT----NRPDSIEPALRRPGRLDRE 572 (1086)
Q Consensus 506 ILfIDEiD~l~~~r~~~~~~~-~~rv~~~Ll~lLd~l~--------~~~~viVIatT----N~~d~idpaL~r~GRfdr~ 572 (1086)
|+||||||.++.+.+.++.+. ..-+...||-++++-. ..+.++||++. ..|.++-|.|. |||.-.
T Consensus 253 IvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPIR 330 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPIR 330 (444)
T ss_pred eEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCceE
Confidence 999999999998765444343 3457788999888743 34568899886 36778888885 699888
Q ss_pred eehhhhhhhhhcccCCCCCCCHHHHHHHHH
Q 001395 573 IEIDMSFLFSLLKNSPAAVPSPAQRLEILH 602 (1086)
Q Consensus 573 I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~ 602 (1086)
+++ ...+.++-..||.
T Consensus 331 VEL--------------~~Lt~~Df~rILt 346 (444)
T COG1220 331 VEL--------------DALTKEDFERILT 346 (444)
T ss_pred EEc--------------ccCCHHHHHHHHc
Confidence 888 7788888877775
No 335
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.95 E-value=2.3e-09 Score=111.52 Aligned_cols=111 Identities=29% Similarity=0.467 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEEcccccccccchhhHHHHHHHHHH------hhcCCCeEEEEccc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTVNGPEVVSQNYGESEQALHEVFDS------ASQSAPAVVFIDEL 512 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~----~~i~I~~s~l~s~~~Gese~~l~~vf~~------a~~~~P~ILfIDEi 512 (1086)
|-..+||+||+|||||.+|+++|+.+.. +++.+|++++... ++.+..+..++.. .... .|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHH
Confidence 4567899999999999999999999986 9999999988761 1112222222221 1122 29999999
Q ss_pred hhhccCCCCCCchhHHHHHHHHHHHhhccc---------cCCCeeEEeccCCCC
Q 001395 513 DAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTDGVLVIAATNRPD 557 (1086)
Q Consensus 513 D~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~---------~~~~viVIatTN~~d 557 (1086)
|++.+....+.+.....+...|+.+|++-. ...+++||+|+|--.
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 999876333334445678899999998632 125789999998644
No 336
>PRK04132 replication factor C small subunit; Provisional
Probab=98.94 E-value=8.5e-09 Score=129.21 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=114.8
Q ss_pred CCeEEEEc--CCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHHHHHHHHHHhhc----C--CCeEEEEc
Q 001395 444 TKGVLLHG--PPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ----S--APAVVFID 510 (1086)
Q Consensus 444 ~~~vLL~G--PpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~--~P~ILfID 510 (1086)
+-+-+..| |++.||||+|+++|+++ +.+++++|+++..+. ..++.+.+.+.. . ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34445668 99999999999999997 557999999885332 234444433221 1 23699999
Q ss_pred cchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCC
Q 001395 511 ELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAA 590 (1086)
Q Consensus 511 EiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~ 590 (1086)
|+|.|- ....+.|+..|+.. .+++.+|++||.+..+.+++++ |+ ..+.| +
T Consensus 638 EaD~Lt-----------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F--------------~ 687 (846)
T PRK04132 638 EADALT-----------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRF--------------R 687 (846)
T ss_pred CcccCC-----------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeC--------------C
Confidence 999983 45678899999874 4578899999999999999998 76 35666 8
Q ss_pred CCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 591 VPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 591 ~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
.|+.++...+|+..+.+.+..+++..+..++..++|
T Consensus 688 ~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 688 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 999999999999988877777788899999999888
No 337
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.94 E-value=3.1e-08 Score=105.29 Aligned_cols=168 Identities=21% Similarity=0.304 Sum_probs=126.8
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE 844 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~se 844 (1086)
..+.+...+++|.+.+++.|.+..+... .-.+..++||+|.-||||++++||+-++. +..+|+|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 4456889999999999999887765432 23456779999999999999999997765 67788888777
Q ss_pred cccccccccHHHHHHHHHHHHhc-CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--cCCCEEEEEecC
Q 001395 845 LFSKWVGESEKAVRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATN 921 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~-~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~~~~v~VI~aTN 921 (1086)
+.. +-.+++..+.. .+-|||.|+.- .+..+.....|-..|||.. ...+|+|.+|+|
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS------------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS------------FEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC------------CCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 642 34455555443 34599999864 1334556677777888764 346899999999
Q ss_pred CCCCCChhhh--------------------CCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC
Q 001395 922 RPDKIDPALL--------------------RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS 965 (1086)
Q Consensus 922 ~p~~lD~aLl--------------------rpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~ 965 (1086)
|.+.|..-+. =..||.-.+.|.+++.++...|++.+.+++++..
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 9887742221 1259999999999999999999999999988764
No 338
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.93 E-value=7.3e-10 Score=117.21 Aligned_cols=45 Identities=38% Similarity=0.576 Sum_probs=36.0
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE 832 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~ 832 (1086)
.|.||+||+.+|+.|.-+... ..++||+||||||||++|+++...
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHC
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHh
Confidence 378999999999988776652 357999999999999999999865
No 339
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=1.6e-08 Score=123.98 Aligned_cols=222 Identities=12% Similarity=0.154 Sum_probs=132.8
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEE-EeCCcc--
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLA-VKGPEL-- 845 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~-v~~sel-- 845 (1086)
..+.++++++|+++..++++.++.... ++..+.+.++|+||||||||++++++|++++..+++ ++....
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 345678999999999998888875311 122333449999999999999999999998876544 221100
Q ss_pred --------------ccccccccHHHHHHHHHHHHh----------cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 846 --------------FSKWVGESEKAVRSLFAKARA----------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 846 --------------~~~~vGese~~ir~lf~~A~~----------~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
+..+ .......+.++..+.. ....||||||++.+... ..+.+..+
T Consensus 150 ~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----------~~~~lq~l 218 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----------DTRALHEI 218 (637)
T ss_pred cccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----------hHHHHHHH
Confidence 0011 1123344555555541 34669999999876421 22344555
Q ss_pred HH-HHhccccCCCEEEEEecCC-CC--------------CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-
Q 001395 902 LV-ELDGLHQRVNVTVIAATNR-PD--------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS- 964 (1086)
Q Consensus 902 L~-~Ld~~~~~~~v~VI~aTN~-p~--------------~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~- 964 (1086)
|. ... ....+.+|++++. +. .|.++++...|. .+|.|++.......+.|+..++.....
T Consensus 219 Lr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~ 294 (637)
T TIGR00602 219 LRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKN 294 (637)
T ss_pred HHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcc
Confidence 55 221 1334555555542 11 134777753344 478999999999888888777643211
Q ss_pred -------CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh-----cCCCCCCHHHHHHHHHhh
Q 001395 965 -------SDVNIRELACLSEGCTGADISLICREAAISAIEEN-----LDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 965 -------~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~-----~~~~~It~~d~~~al~~~ 1017 (1086)
....+..|+....| |++.+++..-+.+.+.. .....++..|...+..+.
T Consensus 295 ~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~ 355 (637)
T TIGR00602 295 GEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKG 355 (637)
T ss_pred ccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccC
Confidence 12356777777777 99988886655544321 112345556665554443
No 340
>PHA02244 ATPase-like protein
Probab=98.92 E-value=7e-09 Score=118.36 Aligned_cols=116 Identities=22% Similarity=0.313 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccc----cccccchhhHH-HHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE----VVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~----l~s~~~Gese~-~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
.+.+|||+||||||||++|+++|..++.+|+.+++.. +.+ +...... .-..++.... ...+|||||++.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~- 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK--KGGLFFIDEIDASI- 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh--cCCEEEEeCcCcCC-
Confidence 3557999999999999999999999999999988421 111 1111000 0112233333 23599999998772
Q ss_pred CCCCCCchhHHHHHHHHHHHhhc---------cccCCCeeEEeccCCC-----------CCCCccccCCCCcceeeeh
Q 001395 518 ARKDGGEELSQRMVATLLNLMDG---------VCRTDGVLVIAATNRP-----------DSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~---------l~~~~~viVIatTN~~-----------d~idpaL~r~GRfdr~I~i 575 (1086)
+.+...|...++. .....++.+|+|+|.. ..++++++. ||- .+++
T Consensus 194 ----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~ 258 (383)
T PHA02244 194 ----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEF 258 (383)
T ss_pred ----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeC
Confidence 4455566666642 1234678999999973 456788887 884 5666
No 341
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.2e-09 Score=117.55 Aligned_cols=131 Identities=29% Similarity=0.383 Sum_probs=90.9
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhC----CCC-CCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc-cc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG----TRP-PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SK 848 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg----~~~-~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~-~~ 848 (1086)
+.++||+.+|+.|--++. .|-..+.... ... ..++||.||+|||||+||+.+|+.++.||..-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVY---NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVY---NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeeh---hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 457899999887654443 2211111111 112 34599999999999999999999999999999988774 56
Q ss_pred cccccHHHH-HHHHHHH----HhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhcc
Q 001395 849 WVGESEKAV-RSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGL 908 (1086)
Q Consensus 849 ~vGese~~i-r~lf~~A----~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~ 908 (1086)
|+|+...++ ..++..| ..+...||||||||.++++....+-. +-..+-++..||+.|+|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 999987664 3343332 12335599999999998765433322 223467899999999875
No 342
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.91 E-value=8e-09 Score=120.71 Aligned_cols=139 Identities=23% Similarity=0.325 Sum_probs=86.8
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------EEEEc----cc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------LFTVN----GP 478 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~-------~i~I~----~s 478 (1086)
++++.+-+...+.+...+. .+++++|+||||||||++|+.+|..+... .+.+. ..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 3556666666655544432 25689999999999999999999887431 22222 12
Q ss_pred cccccc----chhh--HHHHHHHHHHhhc--CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc----------
Q 001395 479 EVVSQN----YGES--EQALHEVFDSASQ--SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG---------- 540 (1086)
Q Consensus 479 ~l~s~~----~Ges--e~~l~~vf~~a~~--~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~---------- 540 (1086)
+++..+ .|-. ...+..+++.|.. ..|.|||||||+..- ..++...++.+|+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC----------HHHhhhhhhhhcccccccccccee
Confidence 333222 1110 1123344455554 357899999998653 23344445555542
Q ss_pred ----------cccCCCeeEEeccCCCC----CCCccccCCCCcceeeeh
Q 001395 541 ----------VCRTDGVLVIAATNRPD----SIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 541 ----------l~~~~~viVIatTN~~d----~idpaL~r~GRfdr~I~i 575 (1086)
+.-..++.||||+|..| .+|.||+| ||. .|++
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i 355 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDI 355 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEe
Confidence 22346799999999988 78999999 995 4555
No 343
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=1.4e-08 Score=124.38 Aligned_cols=200 Identities=14% Similarity=0.231 Sum_probs=116.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE-Eccc---ccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT-VNGP---EVVSQ 483 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~-I~~s---~l~s~ 483 (1086)
..++++.|.++.++.|+.++... .++..+++.++|+|||||||||+++++|++++..+++ ++.. .....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~-------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~ 153 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQ-------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKND 153 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhc-------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccc
Confidence 45689999999999999887654 2344566779999999999999999999998765433 2211 00000
Q ss_pred c------------chhhHHHHHHHHHHhh----------cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc
Q 001395 484 N------------YGESEQALHEVFDSAS----------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 541 (1086)
Q Consensus 484 ~------------~Gese~~l~~vf~~a~----------~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l 541 (1086)
| +.......+.++..+. .....||||||++.++.. ..+.+..++.. .+
T Consensus 154 ~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr~--~~ 223 (637)
T TIGR00602 154 HKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILRW--KY 223 (637)
T ss_pred cccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHHH--Hh
Confidence 0 0111233444454443 234579999999987531 11233334331 11
Q ss_pred ccCCCeeEEeccCC-CC-------C-------CCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHc
Q 001395 542 CRTDGVLVIAATNR-PD-------S-------IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLS 606 (1086)
Q Consensus 542 ~~~~~viVIatTN~-~d-------~-------idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~ 606 (1086)
...+.+.+|++++. +. . +.+++++.-|. .+|.| ++.+..+....|+..+.
T Consensus 224 ~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~F--------------nPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 224 VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISF--------------NPIAPTIMKKFLNRIVT 288 (637)
T ss_pred hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEe--------------CCCCHHHHHHHHHHHHH
Confidence 22344555554442 11 0 22455431133 24555 89999997777777766
Q ss_pred cCccc------c-chHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 607 GMEHS------L-LDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 607 ~~~~~------l-~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
..... . .+..++.|+...+| |++..+....+.+
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~ 328 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSS 328 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHH
Confidence 43211 1 34577888876665 7777665544444
No 344
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.91 E-value=3e-08 Score=107.28 Aligned_cols=127 Identities=22% Similarity=0.306 Sum_probs=80.6
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC-------------CCCCChhhhCCCC
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-------------PDKIDPALLRPGR 935 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~-------------p~~lD~aLlrpgR 935 (1086)
|.||||||+|.| +-+....|-+.|+.. -.-+||+|||+ |+-+.+.|+. |
T Consensus 297 PGVLFIDEVhML-------------DiEcFTyL~kalES~---iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--R 358 (456)
T KOG1942|consen 297 PGVLFIDEVHML-------------DIECFTYLHKALESP---IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--R 358 (456)
T ss_pred CcceEeeehhhh-------------hhHHHHHHHHHhcCC---CCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--h
Confidence 889999999976 335555566666533 23478888886 4557788887 6
Q ss_pred cceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 936 FDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 936 Fd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
+ .+|..-+++.++..+|+++..+...+.- +..+..|+.....-+-+-.-+++.-|...|-.. ....|..+|+++.-
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~--g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTN--GRKEISVEDVEEVT 435 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHc--CCceeecccHHHHH
Confidence 5 3566668889999999999887666552 334666666554433343334444444444333 24467777777664
Q ss_pred Hh
Q 001395 1015 RH 1016 (1086)
Q Consensus 1015 ~~ 1016 (1086)
.-
T Consensus 436 ~L 437 (456)
T KOG1942|consen 436 EL 437 (456)
T ss_pred HH
Confidence 43
No 345
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.2e-08 Score=116.13 Aligned_cols=136 Identities=26% Similarity=0.359 Sum_probs=95.9
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC----------------------
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------------------- 469 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg---------------------- 469 (1086)
++.|.+.....+...+... + +-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 4556666666666655432 1 1233599999999999999999999886
Q ss_pred --CcEEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc
Q 001395 470 --VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 543 (1086)
Q Consensus 470 --~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~ 543 (1086)
-.+++++.++..... -....++.+-+.... ....|++|||+|.+ .....+.|+..|+. .
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe--p 136 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE--P 136 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--C
Confidence 367888877764432 123345555443322 34579999999998 34677888888877 3
Q ss_pred CCCeeEEeccCCCCCCCccccCCCCcceeeeh
Q 001395 544 TDGVLVIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 544 ~~~viVIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
..+..+|.+||.++.+-+.+++ |+. .+.|
T Consensus 137 ~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f 165 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRS--RCQ-RIRF 165 (325)
T ss_pred CCCeEEEEEcCChhhccchhhh--cce-eeec
Confidence 5678899999999999999988 663 4555
No 346
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-08 Score=113.38 Aligned_cols=99 Identities=26% Similarity=0.451 Sum_probs=75.7
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc-ccccccccHH-HHHHHHHHHH----hcCCeEEEEecCchhhhh
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL-FSKWVGESEK-AVRSLFAKAR----ANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel-~~~~vGese~-~ir~lf~~A~----~~~p~ILflDEid~L~~~ 883 (1086)
.+|||.||+|+|||+||+.||+.++.||...+|..| ...|+|+... -+..++..|. ..+..|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 569999999999999999999999999999999887 4679998644 4566655442 234559999999999854
Q ss_pred cCCCCCC-CCccHHHHHHHHHHHhcc
Q 001395 884 RGKESDG-VSVSDRVMSQLLVELDGL 908 (1086)
Q Consensus 884 r~~~~~~-~~~~~~v~~~LL~~Ld~~ 908 (1086)
-...+.. +-..+-++..||+.++|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 4333322 223467889999999864
No 347
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.89 E-value=2.9e-09 Score=110.87 Aligned_cols=113 Identities=23% Similarity=0.322 Sum_probs=73.5
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCC----cEEEEeCCccccccccccHHHHHHHHHHH----HhcCCeEEEEecCchh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGL----NFLAVKGPELFSKWVGESEKAVRSLFAKA----RANAPSIIFFDEIDGL 880 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~----~fi~v~~sel~~~~vGese~~ir~lf~~A----~~~~p~ILflDEid~L 880 (1086)
-..++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+ ......||||||||..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 345899999999999999999999996 9999999987651 11111122222211 1111229999999977
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEEEecCCCCC
Q 001395 881 AAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDK 925 (1086)
Q Consensus 881 ~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI~aTN~p~~ 925 (1086)
.+.. .....-....+++.||+.|++.. ...++++|+|+|--..
T Consensus 81 ~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 81 HPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp SHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 5531 11111223488999999997542 2347999999986543
No 348
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.88 E-value=1.1e-08 Score=117.48 Aligned_cols=120 Identities=26% Similarity=0.334 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc--cchhhHHHHH----HHHHHhhc--CCC--eEEEEccc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ--NYGESEQALH----EVFDSASQ--SAP--AVVFIDEL 512 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~--~~Gese~~l~----~vf~~a~~--~~P--~ILfIDEi 512 (1086)
.+.++||-||||||||++|+.+|+.++.+|+.++|..-... ..|...-... ..|..... ... +|+|+|||
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 35679999999999999999999999999999998754422 2232221111 11110000 001 49999999
Q ss_pred hhhccCCCCCCchhHHHHHHHHHHHhhc----------cccCCCeeEEeccCC-----CCCCCccccCCCCcceeeeh
Q 001395 513 DAIAPARKDGGEELSQRMVATLLNLMDG----------VCRTDGVLVIAATNR-----PDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 513 D~l~~~r~~~~~~~~~rv~~~Ll~lLd~----------l~~~~~viVIatTN~-----~d~idpaL~r~GRfdr~I~i 575 (1086)
+.. ...+.+.|+..|+. +.-...++||+|.|. ...+++++++ ||...+.+
T Consensus 122 nra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 122 NRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred ccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 866 36778889998887 223367889999894 4467888988 89767777
No 349
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.87 E-value=1e-07 Score=119.43 Aligned_cols=133 Identities=22% Similarity=0.321 Sum_probs=87.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccc--cccch----h----hHHHHHHHHHHhhcCCCeEEEEccch
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV--SQNYG----E----SEQALHEVFDSASQSAPAVVFIDELD 513 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~--s~~~G----e----se~~l~~vf~~a~~~~P~ILfIDEiD 513 (1086)
.-++|+.||..+|||+.+..+|++.|..|++||-.+-. ..|+| + .+-+-+.+.+..+.+ .+|++||+.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELN 965 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELN 965 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeeccc
Confidence 45689999999999999999999999999999865432 22333 1 111222233333444 399999985
Q ss_pred hhccCCCCCCchhHHHHHHHHHHHhhccc------------cCCCeeEEeccCCCC------CCCccccCCCCcceeeeh
Q 001395 514 AIAPARKDGGEELSQRMVATLLNLMDGVC------------RTDGVLVIAATNRPD------SIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 514 ~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~------------~~~~viVIatTN~~d------~idpaL~r~GRfdr~I~i 575 (1086)
-. ...++..|-.+||.-+ ..+++.+.||-|+|. .+..|+|. ||- ++++
T Consensus 966 LA-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hF 1031 (4600)
T COG5271 966 LA-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHF 1031 (4600)
T ss_pred cC-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhc
Confidence 33 2456677777776532 235677777778765 34567776 763 3344
Q ss_pred hhhhhhhhcccCCCCCCCHHHHHHHHHHHHc
Q 001395 576 DMSFLFSLLKNSPAAVPSPAQRLEILHALLS 606 (1086)
Q Consensus 576 ~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~ 606 (1086)
..-.+++...||+..+.
T Consensus 1032 --------------ddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1032 --------------DDIPEDELEEILHGRCE 1048 (4600)
T ss_pred --------------ccCcHHHHHHHHhccCc
Confidence 44557788888886543
No 350
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.8e-09 Score=114.96 Aligned_cols=129 Identities=22% Similarity=0.365 Sum_probs=91.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHhhh---cCCC-CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccc-cccch
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTLSS---LGLR-PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV-SQNYG 486 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~~~---lgi~-~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~-s~~~G 486 (1086)
-++|++..|+.|.=++... ++.+... -.+. ...+|||.||+|||||.||+.+|+.++++|-.-++..+. ..|+|
T Consensus 62 YVIGQe~AKKvLsVAVYNH-YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNH-YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred heecchhhhceeeeeehhH-HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 4789998888776655443 2222111 1111 356899999999999999999999999999999998887 45888
Q ss_pred hh-HHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCC--ch-hHHHHHHHHHHHhhcc
Q 001395 487 ES-EQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGG--EE-LSQRMVATLLNLMDGV 541 (1086)
Q Consensus 487 es-e~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~--~~-~~~rv~~~Ll~lLd~l 541 (1086)
+- |..+..+++.|.. ....||+|||||.++.+.+..+ .+ ...-+...||.++++-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 75 4556666665422 2345999999999987654332 11 2345778899999873
No 351
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.86 E-value=2.6e-08 Score=120.80 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=100.2
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC-cEEEE---eCCcccccc--
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-NFLAV---KGPELFSKW-- 849 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-~fi~v---~~sel~~~~-- 849 (1086)
+|.|++.+|..+.-.+..... +..-....++...++||+|+||||||++|+++++.... .|+.. ++..+....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 477888887776655432100 00001112333447999999999999999999987643 33321 121221111
Q ss_pred ---ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEE
Q 001395 850 ---VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVT 915 (1086)
Q Consensus 850 ---vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~ 915 (1086)
.|+..-. ...+.. +...+++|||++.+ ....+..|+..|+... ...+..
T Consensus 283 ~~~~g~~~~~-~G~l~~---A~~Gil~iDEi~~l-------------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 283 DPETREFTLE-GGALVL---ADNGVCCIDEFDKM-------------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred ccCcceEEec-CccEEe---cCCCEEEEechhhC-------------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 1110000 001111 23459999999965 5677888888886432 124688
Q ss_pred EEEecCCCC-------------CCChhhhCCCCcceEee-cCCCCHHHHHHHHHHHH
Q 001395 916 VIAATNRPD-------------KIDPALLRPGRFDRLLY-VGPPNETDREEIFRIHL 958 (1086)
Q Consensus 916 VI~aTN~p~-------------~lD~aLlrpgRFd~~I~-~~~P~~~eR~~Il~~~l 958 (1086)
||+|+|..+ .+++++++ |||.++. ...|+.+...+|.++.+
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 999999652 58999999 9997544 46888888888888754
No 352
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=3.1e-08 Score=112.84 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=117.0
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------EEEEcccc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------LFTVNGPE 479 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~----------~i~I~~s~ 479 (1086)
|++|+|++.+++.++..+.... -+..+||+||+|+||+++|+++|+.+-+. +...+.+|
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~r-----------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD 71 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNR-----------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD 71 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC
Confidence 5799999999999999986652 24579999999999999999999876321 11122222
Q ss_pred ccccc-----chh--------------------hHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHH
Q 001395 480 VVSQN-----YGE--------------------SEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRM 530 (1086)
Q Consensus 480 l~s~~-----~Ge--------------------se~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv 530 (1086)
+.--+ -|. .-..++++.+.+. .....|++||++|.+ ....
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~~a 140 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NEAA 140 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CHHH
Confidence 21000 010 0113455544332 234579999999988 3456
Q ss_pred HHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc
Q 001395 531 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH 610 (1086)
Q Consensus 531 ~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~ 610 (1086)
.+.|+..|+... +.++|..|+.++.+-|.+++ |+ ..+.+ +.++.++..++|+.......
T Consensus 141 aNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f--------------~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 141 ANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPF--------------YRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred HHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEec--------------CCCCHHHHHHHHHHhhcccc-
Confidence 788999998853 45677888899999999998 76 35566 89999999999987643211
Q ss_pred ccchHHHHHHHHHcCCCc
Q 001395 611 SLLDSEVEYLSMATHGFV 628 (1086)
Q Consensus 611 ~l~d~~l~~La~~t~Gfs 628 (1086)
.+.++..++...+|=.
T Consensus 200 --~~~~~~~l~~~a~Gs~ 215 (314)
T PRK07399 200 --LNINFPELLALAQGSP 215 (314)
T ss_pred --chhHHHHHHHHcCCCH
Confidence 1223456666666633
No 353
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=4.5e-08 Score=112.10 Aligned_cols=149 Identities=21% Similarity=0.318 Sum_probs=101.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc------------------------EEEEcccccccccchhhHHHHHHHHHH
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVN------------------------LFTVNGPEVVSQNYGESEQALHEVFDS 498 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~------------------------~i~I~~s~l~s~~~Gese~~l~~vf~~ 498 (1086)
.+..+||+||+|+|||++|+++|+.+.+. ++.+...+- ++.+ .-..++++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~i--~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKTI--KVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCCC--CHHHHHHHHHH
Confidence 46679999999999999999999987431 222221100 0101 12234444443
Q ss_pred h----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeee
Q 001395 499 A----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 574 (1086)
Q Consensus 499 a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~ 574 (1086)
+ ......|++||++|.+ .....+.|++.|++. .+++++|.+|+.++.+.|.+++ |+. .+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~-~~~ 161 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ-QQA 161 (328)
T ss_pred HhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce-eee
Confidence 2 3345679999999988 356778999999883 4688999999999999999999 775 366
Q ss_pred hhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCc
Q 001395 575 IDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 628 (1086)
Q Consensus 575 i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gfs 628 (1086)
+ ++|+.++..+.|...... ..+.....++...+|-.
T Consensus 162 ~--------------~~~~~~~~~~~L~~~~~~----~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 162 C--------------PLPSNEESLQWLQQALPE----SDERERIELLTLAGGSP 197 (328)
T ss_pred C--------------CCcCHHHHHHHHHHhccc----CChHHHHHHHHHcCCCH
Confidence 6 889999888877754311 23444555666666643
No 354
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=120.96 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=27.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3566788889999999999999999999765
No 355
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.82 E-value=1.5e-08 Score=122.59 Aligned_cols=31 Identities=35% Similarity=0.455 Sum_probs=27.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3567788999999999999999999999865
No 356
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.81 E-value=2e-08 Score=121.48 Aligned_cols=200 Identities=23% Similarity=0.300 Sum_probs=125.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH-----------cCCcEEEEc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD-----------SGVNLFTVN 476 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~-----------lg~~~i~I~ 476 (1086)
..+++|+|.+..++.+++.+... .....+|||+|++||||+++|++|.+. .+.+|+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 34678999999999998887654 123567999999999999999999876 356899999
Q ss_pred cccccccc-----chhhH--------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-
Q 001395 477 GPEVVSQN-----YGESE--------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC- 542 (1086)
Q Consensus 477 ~s~l~s~~-----~Gese--------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~- 542 (1086)
|..+.... .|..+ ..-..+|+.|..+ .||||||+.| .......|+..|+.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEM-----------PLPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhC-----------CHHHHHHHHhhhhcCeE
Confidence 98774321 11100 0011345555444 8999999988 4566778888886521
Q ss_pred -c-------CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHcc---
Q 001395 543 -R-------TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSG--- 607 (1086)
Q Consensus 543 -~-------~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~--- 607 (1086)
. .-++.+|++||.. +. .+...|+|...+ +..+..+.+..|...+|.+ +++.+++.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL-------~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~ 421 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDL-------FYRLSILRLQLPPLRERVADILPLAESFLKQSLA 421 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HH-HHHhcccchHHH-------HHHhcCCeecCCChhhchhHHHHHHHHHHHHHHH
Confidence 1 1245788888753 22 222345665432 2344556667788777653 33444433
Q ss_pred -CccccchHHH-------HHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 608 -MEHSLLDSEV-------EYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 608 -~~~~l~d~~l-------~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
.+..++...+ +.|..+..--+-++|.+++..++.
T Consensus 422 ~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 422 ALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 2333343333 334444444467888888887765
No 357
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.81 E-value=1.9e-08 Score=103.84 Aligned_cols=133 Identities=26% Similarity=0.375 Sum_probs=92.7
Q ss_pred cchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC-----------------------C
Q 001395 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----------------------L 835 (1086)
Q Consensus 779 G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~-----------------------~ 835 (1086)
|++.+.+.|...+.. -+.+..+||+||+|+||+++|+++|+.+- .
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 678888888887763 35567799999999999999999998642 2
Q ss_pred cEEEEeCCccccccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccC
Q 001395 836 NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 911 (1086)
Q Consensus 836 ~fi~v~~sel~~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~ 911 (1086)
+++.++..+... .-....+|++...+.. +...|++|||+|.| +...++.||+.|+. +.
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEE--PP 130 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcC--CC
Confidence 344444332100 0124566666665532 34679999999965 67899999999995 45
Q ss_pred CCEEEEEecCCCCCCChhhhCCCCcceEeecCC
Q 001395 912 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 944 (1086)
Q Consensus 912 ~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~ 944 (1086)
.++++|++|+.++.|-|.+++ |+ ..+.|++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 689999999999999999999 87 4666654
No 358
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.80 E-value=1.3e-07 Score=102.44 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=69.5
Q ss_pred CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC-------------CCCCCccccCCCCcc
Q 001395 504 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-------------PDSIEPALRRPGRLD 570 (1086)
Q Consensus 504 P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~-------------~d~idpaL~r~GRfd 570 (1086)
|.||||||+|.| +-.....|...|+. .-.-+||.++|+ |..+++.++ |
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dll-----D 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLL-----D 357 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHh-----h
Confidence 668888888877 23334445455543 223467777775 334445544 3
Q ss_pred eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 571 REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 571 r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
|.+-|. .-.+++++.++|++......++.+++..+..++.....-+.+-..+|+.-|...|
T Consensus 358 Rl~Iir------------t~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 358 RLLIIR------------TLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred heeEEe------------eccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 444332 2678899999999999988888888999988888765555555555554444333
No 359
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=1.3e-08 Score=119.46 Aligned_cols=200 Identities=22% Similarity=0.274 Sum_probs=137.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~ 483 (1086)
.+.|++|+|-.+...++.+.+... ......|||+|.+||||-.+|++|.+.. +.+|+.+||..+-..
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 367899999999888888776544 2456789999999999999999998865 569999999776433
Q ss_pred -------------cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-----
Q 001395 484 -------------NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R----- 543 (1086)
Q Consensus 484 -------------~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~----- 543 (1086)
+-|....--...|+.|..+ -||+|||..+ ...++..||..|+.-. +
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCCC
Confidence 1122221123456666666 6999999766 5678888998886521 1
Q ss_pred --CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHH----HHHHc----cCc--c-
Q 001395 544 --TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEIL----HALLS----GME--H- 610 (1086)
Q Consensus 544 --~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL----~~~l~----~~~--~- 610 (1086)
.-+|-||+|||+. +-.++ ..|+|...+ ++.++++++..|...+|.+=+ +.++. .++ .
T Consensus 377 ~~~vDVRIIAATN~n--L~~~i-~~G~FReDL-------YYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~ 446 (560)
T COG3829 377 PIPVDVRIIAATNRN--LEKMI-AEGTFREDL-------YYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVK 446 (560)
T ss_pred ceeeEEEEEeccCcC--HHHHH-hcCcchhhh-------eeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcc
Confidence 1258999999973 22223 347776543 456788888999877775422 22222 222 2
Q ss_pred ccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 611 SLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 611 ~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
.+++..+..|.+...--+-++|++++..+.
T Consensus 447 ~ls~~a~~~L~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 447 GLSPDALALLLRYDWPGNVRELENVIERAV 476 (560)
T ss_pred cCCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 266777888877765557889999887765
No 360
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.80 E-value=6.6e-08 Score=118.91 Aligned_cols=191 Identities=20% Similarity=0.221 Sum_probs=118.0
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhC--CcEEEEeCCccccccccccH--HHHH---HHHHH--HHhcCCeEEEEecCchh
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESE--KAVR---SLFAK--ARANAPSIIFFDEIDGL 880 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~--~~fi~v~~sel~~~~vGese--~~ir---~lf~~--A~~~~p~ILflDEid~L 880 (1086)
.+|||.|+||||||++|++++..+. .+|+.+..........|... ..++ ..|.. .......|||+|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 4699999999999999999999875 36888875322222333210 0000 00000 00122359999999965
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCCC---CCChhhhCCCCcceEeecC-CC
Q 001395 881 AAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD---KIDPALLRPGRFDRLLYVG-PP 945 (1086)
Q Consensus 881 ~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p~---~lD~aLlrpgRFd~~I~~~-~P 945 (1086)
...+++.|+..|+... ...++.||+++|..+ .+.++|+. ||...+.+. .|
T Consensus 97 -------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 97 -------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred -------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 6788999999997432 123678999888765 68899999 999766655 56
Q ss_pred CHHHHHHHHHHHHhcCC----C--------------------CCcccHHHHHHHc--CCCc-HHHHHHHHHHHHHHHHHH
Q 001395 946 NETDREEIFRIHLRKIP----C--------------------SSDVNIRELACLS--EGCT-GADISLICREAAISAIEE 998 (1086)
Q Consensus 946 ~~~eR~~Il~~~l~~~~----l--------------------~~d~~l~~La~~t--~g~s-gadl~~l~~~A~~~A~~~ 998 (1086)
+.++|.+|++.++.... . ..+..+..++..+ .|.+ .+.-..+++-|...|.-+
T Consensus 162 ~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 162 SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 77888998887653211 0 0111123333322 1332 233334455455555444
Q ss_pred hcCCCCCCHHHHHHHHHhh
Q 001395 999 NLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 999 ~~~~~~It~~d~~~al~~~ 1017 (1086)
. ...|+.+|+..++.-+
T Consensus 242 g--r~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 242 G--RTEVTEEDLKLAVELV 258 (589)
T ss_pred C--CCCCCHHHHHHHHHHH
Confidence 4 5679999999988654
No 361
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.80 E-value=6.4e-08 Score=111.07 Aligned_cols=196 Identities=20% Similarity=0.203 Sum_probs=120.5
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccc----
Q 001395 413 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY---- 485 (1086)
Q Consensus 413 I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~---- 485 (1086)
|+|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.|||..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 356667777777666544 1345679999999999999999998655 46999999987643211
Q ss_pred -hhh-------HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CCCee
Q 001395 486 -GES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDGVL 548 (1086)
Q Consensus 486 -Ges-------e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~~vi 548 (1086)
|.. ...-...|+.|.. ..||||||+.+ ...++..|+..|+.-. . ..++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~g---GtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERADG---GTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCCC---CEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 100 0001123444433 48999999988 4567778888886532 1 13578
Q ss_pred EEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHcc------Cc--cccchHH
Q 001395 549 VIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSG------ME--HSLLDSE 616 (1086)
Q Consensus 549 VIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~------~~--~~l~d~~ 616 (1086)
+|++|+..- . .+...|+|...+ ++.+..+.+..|...+|.+ +++.++.. .. ..+++..
T Consensus 137 iI~at~~~l--~-~~~~~g~fr~dL-------~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a 206 (329)
T TIGR02974 137 LVCATNADL--P-ALAAEGRFRADL-------LDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQA 206 (329)
T ss_pred EEEechhhH--H-HHhhcCchHHHH-------HHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHH
Confidence 888887521 1 122234553322 2233344556677666643 33333321 12 3467888
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 617 VEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 617 l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
++.|..+..--+-++|.+++..++..
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 88888877666788898888877654
No 362
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.2e-07 Score=108.16 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=106.3
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCC------------------------cEEEEeCCccccccccccHHHHHHHHH
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 862 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------------------~fi~v~~sel~~~~vGese~~ir~lf~ 862 (1086)
+.+.++||+||.|+||+++|+++|+.+-+ +|+.+...+ ++. -....+|++.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHH
Confidence 45678999999999999999999987522 122222110 111 13456676655
Q ss_pred HHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcce
Q 001395 863 KAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 938 (1086)
Q Consensus 863 ~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~ 938 (1086)
.+. .+...|++||++|.+ +....|.||+.|+. +..++++|.+|+.++.|-|.+++ |+ .
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-Q 159 (325)
T ss_pred HHhhccccCCceEEEEechhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-e
Confidence 543 344569999999966 67889999999994 56789999999999999999998 87 4
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHH
Q 001395 939 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGAD 983 (1086)
Q Consensus 939 ~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgad 983 (1086)
.+.|++|+.++..+.|..... ........++..+.|-.+..
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHHHH
Confidence 788999999888877765431 11223445556666644433
No 363
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.78 E-value=5.1e-08 Score=116.76 Aligned_cols=208 Identities=21% Similarity=0.251 Sum_probs=123.0
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC----CcEEEEe------C
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG----LNFLAVK------G 842 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~----~~fi~v~------~ 842 (1086)
.+.++.|+..+++.+.- ......+++|+||||||||++++.++.... ...+++. +
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 56677787766654321 123445699999999999999999987532 1111111 1
Q ss_pred C-----cc-----c--------cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHH
Q 001395 843 P-----EL-----F--------SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 904 (1086)
Q Consensus 843 s-----el-----~--------~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~ 904 (1086)
. .+ . ...+|.....-...+..|.. .+||+||++.+ ...++..|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-------------~~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-------------ERRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-------------CHHHHHHHHHH
Confidence 0 00 0 00122111111233444444 49999999843 67888899988
Q ss_pred Hhccc-----------cCCCEEEEEecCCCC---------------------CCChhhhCCCCcceEeecCCCCHHH---
Q 001395 905 LDGLH-----------QRVNVTVIAATNRPD---------------------KIDPALLRPGRFDRLLYVGPPNETD--- 949 (1086)
Q Consensus 905 Ld~~~-----------~~~~v~VI~aTN~p~---------------------~lD~aLlrpgRFd~~I~~~~P~~~e--- 949 (1086)
|+... ...++.+|+|+|... .+..+++. |||..+.++.|+.++
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~ 395 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSK 395 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhc
Confidence 85432 134689999999753 36778888 999999999885331
Q ss_pred -------HHHHHHHHH--------hcCCCCCccc--------------HHHH--HHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 950 -------REEIFRIHL--------RKIPCSSDVN--------------IREL--ACLSEGCTGADISLICREAAISAIEE 998 (1086)
Q Consensus 950 -------R~~Il~~~l--------~~~~l~~d~~--------------l~~L--a~~t~g~sgadl~~l~~~A~~~A~~~ 998 (1086)
...+-+... ++-.+..... ...+ +....|.|.|....+++-|...|..+
T Consensus 396 ~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~ 475 (506)
T PRK09862 396 TVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADID 475 (506)
T ss_pred ccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 111111100 0000011111 1111 12334778888888888888877666
Q ss_pred hcCCCCCCHHHHHHHHH
Q 001395 999 NLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 999 ~~~~~~It~~d~~~al~ 1015 (1086)
. ...|+.+|+.+|+.
T Consensus 476 g--~~~V~~~hv~eAl~ 490 (506)
T PRK09862 476 Q--SDIITRQHLQEAVS 490 (506)
T ss_pred C--CCCCCHHHHHHHHH
Confidence 5 56799999999975
No 364
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=7.5e-08 Score=110.45 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=106.8
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------------------EEEEeCCccc---------------
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLN-------------------------FLAVKGPELF--------------- 846 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~-------------------------fi~v~~sel~--------------- 846 (1086)
+.+.++||+||+|+||+++|+++|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 677889999999999999999999875331 1222111000
Q ss_pred ---cc----c-ccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCE
Q 001395 847 ---SK----W-VGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 914 (1086)
Q Consensus 847 ---~~----~-vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v 914 (1086)
++ . ..-.-..+|++.+.+. .+...|++||++|.+ +....|.||+.|+ ++..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLE--EPp~~t 163 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANALLKTLE--EPPPGT 163 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHHHHHhc--CCCcCc
Confidence 00 0 0012345676666543 234569999999966 6788999999999 456789
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHH
Q 001395 915 TVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADI 984 (1086)
Q Consensus 915 ~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl 984 (1086)
++|.+|++++.|.|.+++ |+ +.+.|++|+.++..+.|... +... ...++..+.|-.+..+
T Consensus 164 ~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~----~~~~---~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 164 VFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ----GVAD---ADALLAEAGGAPLAAL 223 (342)
T ss_pred EEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc----CCCh---HHHHHHHcCCCHHHHH
Confidence 999999999999999999 88 68899999999988888663 2221 2334566666555444
No 365
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.77 E-value=3.1e-08 Score=119.84 Aligned_cols=201 Identities=21% Similarity=0.262 Sum_probs=124.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~ 484 (1086)
..|++|+|.++.++.+++.+... .....+|||+|++||||+++|++|.+.. +.+|+.+||..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 45678999999999988887554 1235679999999999999999998754 5699999998774321
Q ss_pred -----chhhH--------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c------
Q 001395 485 -----YGESE--------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------ 543 (1086)
Q Consensus 485 -----~Gese--------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~------ 543 (1086)
.|..+ ..-..+|+.|..+ .||||||+.| ...+...|+..|+.-. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCce
Confidence 11000 0112345555433 8999999988 4566778888886421 1
Q ss_pred -CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHcc----Cccccch
Q 001395 544 -TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSG----MEHSLLD 614 (1086)
Q Consensus 544 -~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~----~~~~l~d 614 (1086)
.-++.+|++||..- . .+...|+|...+ +..+..+.+..|...+|.+ +++.++.. ....+++
T Consensus 345 ~~~dvRiIaat~~~l--~-~~v~~g~fr~dL-------~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 414 (526)
T TIGR02329 345 VPVDVRVVAATHCAL--T-TAVQQGRFRRDL-------FYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSE 414 (526)
T ss_pred eeecceEEeccCCCH--H-HHhhhcchhHHH-------HHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 12357888887532 1 112234554322 2234445557777766653 33333332 2233455
Q ss_pred HHHHH-------HHHHcCCCcHHHHHHHHHHHHHH
Q 001395 615 SEVEY-------LSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 615 ~~l~~-------La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
..+.. |.....--+-++|.+++..++..
T Consensus 415 ~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 415 AAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 55554 55555555678888888877643
No 366
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=4.1e-08 Score=112.73 Aligned_cols=148 Identities=20% Similarity=0.274 Sum_probs=102.2
Q ss_pred ccccCC-cHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----------------
Q 001395 410 ISKLGG-LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------- 471 (1086)
Q Consensus 410 l~~I~G-l~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~----------------- 471 (1086)
|+.|.| ++.+++.|+..+... +.+..+||+||+|+|||++|+++|+.+-+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 346666 888999988887654 234568999999999999999999876321
Q ss_pred -------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc
Q 001395 472 -------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 540 (1086)
Q Consensus 472 -------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~ 540 (1086)
+..+... +..+ .-..++.+.+.+. .....|++|||+|.+ .....+.|+..|+.
T Consensus 73 ~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~LEE 136 (329)
T PRK08058 73 DSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFLEE 136 (329)
T ss_pred hcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHhcC
Confidence 2222110 0101 1123444444332 234569999999888 35567889999987
Q ss_pred cccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 541 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 541 l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
..+++++|.+|+.+..+.|++++ |. ..+++ ..|+.++..++|+.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~--------------~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEF--------------RPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeC--------------CCCCHHHHHHHHHH
Confidence 35678888899889999999998 65 35566 88888888777753
No 367
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.77 E-value=4.7e-08 Score=118.65 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556788899999999999999999999865
No 368
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=4.4e-08 Score=119.05 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=27.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
++.+.++..+.|.||+|+|||||+++++..+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35667888899999999999999999998653
No 369
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.77 E-value=5.1e-08 Score=114.94 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=87.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEccc-ccccccchh
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGP-EVVSQNYGE 487 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s-~l~s~~~Ge 487 (1086)
..|+|.+++++.+...+ ..+.++||+||||||||++|++++...+. +|..+.+. .......|.
T Consensus 20 ~~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 45677777666655443 23568999999999999999999987643 33333222 011111221
Q ss_pred h-HHHH--HHHHHHhhcC---CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--------cCCCeeEEecc
Q 001395 488 S-EQAL--HEVFDSASQS---APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------RTDGVLVIAAT 553 (1086)
Q Consensus 488 s-e~~l--~~vf~~a~~~---~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--------~~~~viVIatT 553 (1086)
. -... ..-|.....+ ...+||+|||..+ ...+...|+..|+.-. .-+..++++||
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 1 0000 1112221111 2249999999755 4678889999994421 11224556666
Q ss_pred CCCCC---CCccccCCCCcceeeehhhhhhhhhcccCCCCCCC-HHHHHHHHHHH
Q 001395 554 NRPDS---IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPS-PAQRLEILHAL 604 (1086)
Q Consensus 554 N~~d~---idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd-~~eR~~IL~~~ 604 (1086)
|.... ..+++.. ||-..+.+ |.|+ .++-.+|+...
T Consensus 155 N~LPE~g~~leAL~D--RFliri~v--------------p~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWL--------------DKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEEC--------------CCCCchHHHHHHHHcc
Confidence 75432 2236666 77555555 7776 45557777653
No 370
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.76 E-value=3.4e-08 Score=116.08 Aligned_cols=198 Identities=23% Similarity=0.314 Sum_probs=136.0
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc--
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN-- 484 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~-- 484 (1086)
..+++|.....+++++.+... .....+||++|++||||-.+||+|.+.. +.+|+.|||..+....
T Consensus 140 ~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~E 209 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLE 209 (464)
T ss_pred cCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHH
Confidence 468999999999999988665 1345679999999999999999998765 4599999998775331
Q ss_pred ---c--------hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--cC-------
Q 001395 485 ---Y--------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RT------- 544 (1086)
Q Consensus 485 ---~--------Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~~------- 544 (1086)
. |...+ -...|+.|..+ .||||||..+ ...++..|+..|+.-. +-
T Consensus 210 SELFGhekGAFTGA~~~-r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 210 SELFGHEKGAFTGAITR-RIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHhhcccccCcCCcccc-cCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 1 11111 12356666555 8999999776 4677888888886522 11
Q ss_pred CCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHc----cCc---cccc
Q 001395 545 DGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLS----GME---HSLL 613 (1086)
Q Consensus 545 ~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~----~~~---~~l~ 613 (1086)
-+|-||++||+. +...+ ..|+|-. .+++.++++++..|...+|.+ +++.+++ ..+ ..++
T Consensus 275 vdvRiIaaT~~d--L~~~v-~~G~FRe-------DLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s 344 (464)
T COG2204 275 VDVRIIAATNRD--LEEEV-AAGRFRE-------DLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFS 344 (464)
T ss_pred eeeEEEeecCcC--HHHHH-HcCCcHH-------HHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 247899999862 32233 3478854 345678899999999888764 2333332 222 2356
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 614 DSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 614 d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
...++.|..+..--+-++|.+++..++..
T Consensus 345 ~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 345 PEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 67777777665555678888888877543
No 371
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=3.8e-08 Score=122.59 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=27.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++|++.+
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567888999999999999999999999865
No 372
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.75 E-value=4.2e-08 Score=119.12 Aligned_cols=201 Identities=24% Similarity=0.256 Sum_probs=130.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc-
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN- 484 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~- 484 (1086)
...+|+|....++.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 3467999999998888887664 1235689999999999999999998865 4689999998874321
Q ss_pred ----chhhH-------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------C
Q 001395 485 ----YGESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------T 544 (1086)
Q Consensus 485 ----~Gese-------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~ 544 (1086)
.|... ......|+.+.. ..|||||||.+ ...+...|+..|+.-. . .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 11000 000113444433 38999999988 3566778888876422 1 1
Q ss_pred CCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHc----c---Cccccc
Q 001395 545 DGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLS----G---MEHSLL 613 (1086)
Q Consensus 545 ~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~----~---~~~~l~ 613 (1086)
.++-+|++|+..- . .+...|+|...+ ++.+..+.+..|...+|.+ +++.++. + ....++
T Consensus 321 ~~~RiI~~t~~~l--~-~~~~~~~f~~dL-------~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s 390 (509)
T PRK05022 321 VDVRVIAATNRDL--R-EEVRAGRFRADL-------YHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLS 390 (509)
T ss_pred cceEEEEecCCCH--H-HHHHcCCccHHH-------HhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 2578888887632 1 222334554332 2334455567788777653 2222322 2 123467
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 614 DSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 614 d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+..++.|..+..-.+-++|++++..|+..+
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 888888888877778899999998887655
No 373
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.75 E-value=6.4e-08 Score=120.25 Aligned_cols=153 Identities=24% Similarity=0.342 Sum_probs=98.1
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-------------------
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG------------------- 469 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg------------------- 469 (1086)
.|..|+|++..+..+.-....+ ...+|||.|+||||||++|+++++.+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 3578999998887665444332 123699999999999999999998872
Q ss_pred ----------------CcEEEEcccccccccchhh--HHHHH--------HHHHHhhcCCCeEEEEccchhhccCCCCCC
Q 001395 470 ----------------VNLFTVNGPEVVSQNYGES--EQALH--------EVFDSASQSAPAVVFIDELDAIAPARKDGG 523 (1086)
Q Consensus 470 ----------------~~~i~I~~s~l~s~~~Ges--e~~l~--------~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~ 523 (1086)
.+|+.+.+.......+|.. +..+. .++..| ...|||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC--------
Confidence 3555554433222222321 11110 011111 2249999999988
Q ss_pred chhHHHHHHHHHHHhhcc----cc-------CCCeeEEeccCCCC-CCCccccCCCCcceeeehhhhhhhhhcccCCCCC
Q 001395 524 EELSQRMVATLLNLMDGV----CR-------TDGVLVIAATNRPD-SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAV 591 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l----~~-------~~~viVIatTN~~d-~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~ 591 (1086)
...++..|+..|+.- .. ..++.+|+++|..+ .+.++|.. ||+..+.+ +.
T Consensus 139 ---~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v--------------~~ 199 (633)
T TIGR02442 139 ---DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDV--------------AA 199 (633)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEc--------------cC
Confidence 456778888888642 11 23589999998643 57788888 99877776 33
Q ss_pred C-CHHHHHHHHHH
Q 001395 592 P-SPAQRLEILHA 603 (1086)
Q Consensus 592 P-d~~eR~~IL~~ 603 (1086)
+ +.+++.+|++.
T Consensus 200 ~~~~~~~~~il~~ 212 (633)
T TIGR02442 200 PRDPEERVEIIRR 212 (633)
T ss_pred CCchHHHHHHHHH
Confidence 3 45666777664
No 374
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.75 E-value=3.5e-09 Score=103.59 Aligned_cols=104 Identities=26% Similarity=0.391 Sum_probs=59.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEccc-ccc-----cccchhhHH-----HHHHHHHHhhcCCCeEEEEccchh
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP-EVV-----SQNYGESEQ-----ALHEVFDSASQSAPAVVFIDELDA 514 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s-~l~-----s~~~Gese~-----~l~~vf~~a~~~~P~ILfIDEiD~ 514 (1086)
+|||.|+||+|||++|+++|+.+|..|.+|.+. ++. +..+-+.+. .-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999988764 332 111111100 001111 13999999976
Q ss_pred hccCCCCCCchhHHHHHHHHHHHhhccc---------cCCCeeEEeccCCCC-----CCCccccCCCCc
Q 001395 515 IAPARKDGGEELSQRMVATLLNLMDGVC---------RTDGVLVIAATNRPD-----SIEPALRRPGRL 569 (1086)
Q Consensus 515 l~~~r~~~~~~~~~rv~~~Ll~lLd~l~---------~~~~viVIatTN~~d-----~idpaL~r~GRf 569 (1086)
. ..++.+.|++.|.+-. -...++||||.|+.+ .++.+++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 6 5788899999997632 124588999999876 45566655 55
No 375
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.75 E-value=1.2e-08 Score=124.68 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
++.+.++..+.|.||+|+|||||+++++..+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35667888999999999999999999998753
No 376
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.75 E-value=2.3e-07 Score=103.04 Aligned_cols=175 Identities=15% Similarity=0.273 Sum_probs=103.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCC-cEE--E-Ecc----cccc---cccch-----hh-HH---HHHHHH-HHhhcCC
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGV-NLF--T-VNG----PEVV---SQNYG-----ES-EQ---ALHEVF-DSASQSA 503 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~-~~i--~-I~~----s~l~---s~~~G-----es-e~---~l~~vf-~~a~~~~ 503 (1086)
..++|+||+|+||||+++.+++.+.. .+. . ++. .++. ....| .. .. .+...+ .....+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 222 1 111 1111 00111 11 11 122222 2233566
Q ss_pred CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccC-CCeeEEeccCCCC---CCC----ccccCCCCcceeeeh
Q 001395 504 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT-DGVLVIAATNRPD---SIE----PALRRPGRLDREIEI 575 (1086)
Q Consensus 504 P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~-~~viVIatTN~~d---~id----paL~r~GRfdr~I~i 575 (1086)
+.+|+|||+|.+. ......|..+.+..... ..+.|+.+. .++ .+. ..+.+ |+...+.+
T Consensus 124 ~~vliiDe~~~l~-----------~~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLT-----------PELLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred CeEEEEECcccCC-----------HHHHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 7899999999873 12233333222221112 223333333 222 111 12333 55555566
Q ss_pred hhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCc----cccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 576 DMSFLFSLLKNSPAAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 648 (1086)
Q Consensus 576 ~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~----~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~ 648 (1086)
+..+.++..+++...+...+ ..+++..++.+.+.+.|.. +.|..+|..+...|..+..
T Consensus 190 --------------~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~ 251 (269)
T TIGR03015 190 --------------GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK 251 (269)
T ss_pred --------------CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC
Confidence 89999999999998886543 2467889999999999975 5599999999888876543
No 377
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.74 E-value=7.7e-08 Score=116.71 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=98.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE----ccccccccc--
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV----NGPEVVSQN-- 484 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I----~~s~l~s~~-- 484 (1086)
..|.|++.++..|.-.+.-...+..-....+....+|||+|+||||||++|+++++......+.. ++..+....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 46788888766664444222011110112233445899999999999999999998775432221 221221111
Q ss_pred ---chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-----------cCCCeeEE
Q 001395 485 ---YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVI 550 (1086)
Q Consensus 485 ---~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-----------~~~~viVI 550 (1086)
.|+..-.-. .+..| ...+++|||++.+ .......|+..|+.-. -..++.||
T Consensus 283 ~~~~g~~~~~~G-~l~~A---~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFTLEGG-ALVLA---DNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEEecCc-cEEec---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 111100000 11112 2349999999988 3455677888886422 12468899
Q ss_pred eccCCCC-------------CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHH
Q 001395 551 AATNRPD-------------SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALL 605 (1086)
Q Consensus 551 atTN~~d-------------~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l 605 (1086)
+|+|+.+ .+++++++ |||-.+.+ ...|+.+...+|++..+
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~-------------~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVV-------------LDEVDEERDRELAKHVV 400 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEe-------------cCCCChHHHHHHHHHHH
Confidence 9999763 57889998 99976655 16677777777776643
No 378
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.74 E-value=1e-07 Score=105.21 Aligned_cols=187 Identities=19% Similarity=0.180 Sum_probs=124.9
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc------EEEEeCCc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------FLAVKGPE 844 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------fi~v~~se 844 (1086)
+-..+|+++++++...+.+.... ..-.++|+|||||||||+...+.|+.+-.+ +.+++.++
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd 103 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD 103 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC
Confidence 34567778888887777766432 222389999999999999999999886543 22333333
Q ss_pred cccccccccHHHHHHHHHHHHh-------cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 845 LFSKWVGESEKAVRSLFAKARA-------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~-------~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
-.+ + ...+..-..|+.++. ..+..+++||+|++ +..++++|-+.++.. ..++.++
T Consensus 104 ~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-------------T~~AQnALRRviek~--t~n~rF~ 165 (360)
T KOG0990|consen 104 DRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-------------TRDAQNALRRVIEKY--TANTRFA 165 (360)
T ss_pred ccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHh-------------hHHHHHHHHHHHHHh--ccceEEE
Confidence 211 1 112233345555553 36789999999976 567888888877755 4477788
Q ss_pred EecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 918 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 918 ~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d-~~l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
..+|.+..+-|++.. ||. .+.|.+.+.......+.++++.-++... .-...++....| |++.+++.....+
T Consensus 166 ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~Lqs~~ 237 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALNYLQSIL 237 (360)
T ss_pred EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHHHHHHHH
Confidence 888999999999998 885 4456777777777888887765554422 224445555555 7777666444333
No 379
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.74 E-value=9.8e-08 Score=109.53 Aligned_cols=198 Identities=18% Similarity=0.195 Sum_probs=122.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc----
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ---- 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~---- 483 (1086)
++++|.+...+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~ 75 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (326)
T ss_pred CccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHH
Confidence 57899999999888887665 1345679999999999999999998655 468999999876321
Q ss_pred -cchhhH-------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--cC-------CC
Q 001395 484 -NYGESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RT-------DG 546 (1086)
Q Consensus 484 -~~Gese-------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~~-------~~ 546 (1086)
..|... ......|+.+.. ..|||||+|.+ ...+...|+.+++.-. .. .+
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l~~a~g---GtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFERADG---GTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHccccccccCCcccccCCchhccCC---CeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 111100 000123444433 48999999988 3566777888876522 11 24
Q ss_pred eeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHH----ccCc----cccch
Q 001395 547 VLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALL----SGME----HSLLD 614 (1086)
Q Consensus 547 viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l----~~~~----~~l~d 614 (1086)
+.||++|+..- . .+...|+|... +++.+..+.+..|...+|.+ +++.++ +..+ ..+++
T Consensus 142 ~RiI~~s~~~l--~-~l~~~g~f~~d-------L~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~ 211 (326)
T PRK11608 142 VRLVCATNADL--P-AMVAEGKFRAD-------LLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTE 211 (326)
T ss_pred EEEEEeCchhH--H-HHHHcCCchHH-------HHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 77888876521 0 11122333221 11222233335677666643 333333 2222 23677
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 615 ~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
..++.|.....--+-++|.++++.|...
T Consensus 212 ~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 212 RARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 7888888877666788999888877643
No 380
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.7e-07 Score=106.58 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=107.0
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCC---------------------cEEEEe-CCccccc-c-ccccHHHHHHHHH
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGL---------------------NFLAVK-GPELFSK-W-VGESEKAVRSLFA 862 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~---------------------~fi~v~-~sel~~~-~-vGese~~ir~lf~ 862 (1086)
+.+..+||+||+|+||+++|.++|..+-+ ++..+. .++-.++ . ..-.-..+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 55677999999999999999999976422 122221 0110000 0 0012445677766
Q ss_pred HHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcce
Q 001395 863 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 938 (1086)
Q Consensus 863 ~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~ 938 (1086)
.+.. +.-.|++||++|.+ +....|.||+.|+. +..++++|.+|+.++.|-|.+.+ |+ .
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-Q 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-e
Confidence 5543 33469999999976 67889999999995 45688899999999999999999 88 4
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHH
Q 001395 939 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADIS 985 (1086)
Q Consensus 939 ~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~ 985 (1086)
.+.|+.|+.++..+.|... +.. ..+...++..+.|..+..++
T Consensus 166 ~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHHH
Confidence 7889999998877777542 222 22344667778876665443
No 381
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.73 E-value=1e-07 Score=118.87 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=27.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++|++.+
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3567788999999999999999999999865
No 382
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.73 E-value=8.6e-08 Score=117.24 Aligned_cols=201 Identities=22% Similarity=0.240 Sum_probs=127.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~ 484 (1086)
..+++|+|.+..++.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.+||..+....
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence 34578999999999888877655 1345679999999999999999999875 5699999998773321
Q ss_pred c-----hhhH-------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--cC------
Q 001395 485 Y-----GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RT------ 544 (1086)
Q Consensus 485 ~-----Gese-------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~~------ 544 (1086)
. |... ..-...|+.+. ..+||||||+.+ .......|+..|+.-. ..
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCCceE
Confidence 1 1000 00001122332 348999999988 3556778888886522 11
Q ss_pred -CCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHH----HHHHHHHHccC------ccccc
Q 001395 545 -DGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQR----LEILHALLSGM------EHSLL 613 (1086)
Q Consensus 545 -~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR----~~IL~~~l~~~------~~~l~ 613 (1086)
-++.+|++|+.. +.. +...|+|...++ +.+..+.+..|...+| ..+++.++... +..++
T Consensus 329 ~~~~riI~~s~~~--l~~-~~~~~~f~~~L~-------~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 329 KVDVRLVAATNRD--LEE-AVAKGEFRADLY-------YRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred eecEEEEEeCCCC--HHH-HHHcCCCCHHHH-------HHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 247788888653 111 222456644322 2334444455655444 34444444321 24567
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 614 DSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 614 d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
+..++.|..+..--+.++|.++++.|+..
T Consensus 399 ~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 399 PSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 88888888887666889999998887654
No 383
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.73 E-value=1.2e-07 Score=116.46 Aligned_cols=130 Identities=21% Similarity=0.283 Sum_probs=80.3
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-------------------cCCCEEEEEecCCC--CCCCh
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------------QRVNVTVIAATNRP--DKIDP 928 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-------------------~~~~v~VI~aTN~p--~~lD~ 928 (1086)
++|||||++.| ....+..|++.|+... -..++.||++||+. +.+||
T Consensus 228 GtL~LDei~~L-------------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dp 294 (637)
T PRK13765 228 GVLFIDEINTL-------------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHP 294 (637)
T ss_pred cEEEEeChHhC-------------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhH
Confidence 47777777754 4567888888884321 01367899999885 55799
Q ss_pred hhhCCCCcc---eEeecCC--C-CHHHHHHHHHHHHhcCCC---CCccc---HHHHHH----HcCC-----CcHHHHHHH
Q 001395 929 ALLRPGRFD---RLLYVGP--P-NETDREEIFRIHLRKIPC---SSDVN---IRELAC----LSEG-----CTGADISLI 987 (1086)
Q Consensus 929 aLlrpgRFd---~~I~~~~--P-~~~eR~~Il~~~l~~~~l---~~d~~---l~~La~----~t~g-----~sgadl~~l 987 (1086)
+|.. ||. ..++|+. + +.+.+..+++...+.... ...++ +..|.+ .+.- ..-++|..+
T Consensus 295 dL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l 372 (637)
T PRK13765 295 ALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGL 372 (637)
T ss_pred HHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHH
Confidence 9988 885 4555542 2 244455555544332211 11233 233322 2211 225799999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 988 CREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 988 ~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
+++|...|..+. ...++.+|...|+..
T Consensus 373 ~r~a~~~a~~~~--~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 373 VRVAGDIARSEG--AELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHHHhhc--cceecHHHHHHHHHh
Confidence 999998887765 557889999888754
No 384
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.6e-07 Score=107.94 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=107.3
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHhCC------------------------cEEEEeCCccccccccccHHHHHHHH
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLF 861 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------------------~fi~v~~sel~~~~vGese~~ir~lf 861 (1086)
-+.+..+||+||+|+||+++|.++|..+-+ ++..+.... -+. .-.-..+|++.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHH
Confidence 356778999999999999999999986522 122221110 000 01244566666
Q ss_pred HHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 862 AKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 862 ~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
+.+. .+...|++||++|.+ +....|.||+.|+. +..++++|.+|++++.|-|.+++ |+.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHHhhccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 5543 345679999999976 67889999999994 56789999999999999999999 885
Q ss_pred eEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHH
Q 001395 938 RLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADI 984 (1086)
Q Consensus 938 ~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl 984 (1086)
.+.|++|+.++..+.|... .+.. ......++..+.|-.++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -cccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 6789999988877776542 2222 2234566777777555433
No 385
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.72 E-value=6.8e-08 Score=120.61 Aligned_cols=199 Identities=21% Similarity=0.240 Sum_probs=127.2
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc--
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ-- 483 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~-- 483 (1086)
.|++|+|.++..+++.+.+... .....+|||+|++||||+++|++|.+.. +.+|+.+||..+...
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~ 392 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEAL 392 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHH
Confidence 4678999999888887776554 1235569999999999999999998865 468999999876421
Q ss_pred ---cchhh----HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--cCC-------Ce
Q 001395 484 ---NYGES----EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RTD-------GV 547 (1086)
Q Consensus 484 ---~~Ges----e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~~~-------~v 547 (1086)
..|.. .......|+.|. ...||||||+.+ ...+...|+..|+.-. ..+ ++
T Consensus 393 ~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 393 AEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred HHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 11110 000001233332 348999999988 3566677888876421 111 46
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHccC------ccccchHHH
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSGM------EHSLLDSEV 617 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~~------~~~l~d~~l 617 (1086)
.+|++|+..- ..+...|+|...++ +.+..+.+..|...+|.+ +++.++... ...+++..+
T Consensus 459 riI~~t~~~l---~~~~~~~~f~~dL~-------~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~ 528 (638)
T PRK11388 459 RVIATTTADL---AMLVEQNRFSRQLY-------YALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDAL 528 (638)
T ss_pred EEEEeccCCH---HHHHhcCCChHHHh-------hhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHH
Confidence 7888887632 12223356654332 234455557788777742 333333321 234678888
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 618 EYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 618 ~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
+.|..+...-+.++|.++++.|..
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHH
Confidence 888887766678899998887764
No 386
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=3.7e-08 Score=114.10 Aligned_cols=201 Identities=26% Similarity=0.314 Sum_probs=138.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc-
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN- 484 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~- 484 (1086)
....|+|..+....+.+.|+.. ......|||.|.+||||-.+||+|.+.. +.+|+.+||..+....
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLl 290 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLL 290 (550)
T ss_pred ccccceecCHHHHHHHHHHHHH----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHH
Confidence 4568999999999999988776 2345679999999999999999999766 4589999998775431
Q ss_pred --------chhhHHHH---HHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--cC-------
Q 001395 485 --------YGESEQAL---HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RT------- 544 (1086)
Q Consensus 485 --------~Gese~~l---~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~~------- 544 (1086)
.|.....+ ..-|+.|..+ -||+|||..| .-.++..|+..|+.-. +-
T Consensus 291 ESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 291 ESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred HHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCceeE
Confidence 11111111 1224445444 7999999655 4567788888876521 11
Q ss_pred CCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH--------HHHHHHccCc---cccc
Q 001395 545 DGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE--------ILHALLSGME---HSLL 613 (1086)
Q Consensus 545 ~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~--------IL~~~l~~~~---~~l~ 613 (1086)
-.|-||++||+ ++..+++ .|+|... +++.+.+|++..|...+|.+ .++.+.+..+ ..++
T Consensus 357 VDVRiIAATNR--DL~~~V~-~G~FRaD-------LYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 357 VDVRVIAATNR--DLEEMVR-DGEFRAD-------LYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred EEEEEEeccch--hHHHHHH-cCcchhh-------hhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 14899999997 3333443 4677543 45567888999998777742 2222223333 3467
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 614 DSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 614 d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
...++.|.....--+-+++++++..|+..|
T Consensus 427 ~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 427 AEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 778888887766567899999999998876
No 387
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.72 E-value=3.3e-09 Score=103.76 Aligned_cols=104 Identities=31% Similarity=0.449 Sum_probs=60.5
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEEEeCC-ccc-cccccc----cHH-H----HHHHHHHHHhcCCeEEEEecCch
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGP-ELF-SKWVGE----SEK-A----VRSLFAKARANAPSIIFFDEIDG 879 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~s-el~-~~~vGe----se~-~----ir~lf~~A~~~~p~ILflDEid~ 879 (1086)
++||.|+||+|||++|+++|+..+..|.+|.+. ++. +...|. ... . ---+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 489999999999999999999999999999873 432 111111 000 0 00011 13999999984
Q ss_pred hhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEEEecCCCC-----CCChhhhCCCCc
Q 001395 880 LAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD-----KIDPALLRPGRF 936 (1086)
Q Consensus 880 L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI~aTN~p~-----~lD~aLlrpgRF 936 (1086)
...++++.||..|.... -....+||+|-|..+ .++.|++. ||
T Consensus 74 -------------appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 -------------APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------------S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------------CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 47889999999996432 123578888888765 47888887 77
No 388
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.72 E-value=8.3e-08 Score=116.76 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 3566788889999999999999999999765
No 389
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.71 E-value=3.2e-08 Score=102.71 Aligned_cols=136 Identities=25% Similarity=0.391 Sum_probs=85.8
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc-----
Q 001395 413 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----- 484 (1086)
Q Consensus 413 I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~----- 484 (1086)
|+|.++..+++++.+... ...+.+|||+|++||||+++|++|.+.. +.+|+.|||+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 457777777777766554 1234789999999999999999999865 4689999998774321
Q ss_pred chhh-------HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CCCee
Q 001395 485 YGES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDGVL 548 (1086)
Q Consensus 485 ~Ges-------e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~~vi 548 (1086)
.|.. ...-..+|+.|..+ .||||||+.| ...++..|+++|+.-. . .-++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 1110 01112566666666 8999999988 5678888999887521 1 12688
Q ss_pred EEeccCCCCCCCccccCCCCcceeeeh
Q 001395 549 VIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 549 VIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
||++|+. .+.. +...|+|...++.
T Consensus 137 iI~st~~--~l~~-~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 137 IIASTSK--DLEE-LVEQGRFREDLYY 160 (168)
T ss_dssp EEEEESS---HHH-HHHTTSS-HHHHH
T ss_pred EEeecCc--CHHH-HHHcCCChHHHHH
Confidence 9999985 2222 3334677654443
No 390
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.70 E-value=9e-08 Score=116.15 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566788889999999999999999999865
No 391
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.70 E-value=8.2e-08 Score=116.79 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++|+..+
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566788889999999999999999999865
No 392
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.5e-07 Score=114.24 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567788889999999999999999999764
No 393
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.68 E-value=1.3e-07 Score=118.85 Aligned_cols=200 Identities=22% Similarity=0.272 Sum_probs=128.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc-
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ- 483 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~- 483 (1086)
..+++++|.++.++.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 45678999999888888877654 1235679999999999999999998754 569999999876432
Q ss_pred ----cch--------hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c------
Q 001395 484 ----NYG--------ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------ 543 (1086)
Q Consensus 484 ----~~G--------ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~------ 543 (1086)
..| ...... ..|+.+.. .+||||||+.+ ...+...|+..|+.-. .
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~-g~le~a~~---GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRI-GRFELADK---SSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred hhhhhcCcccccccccccchh-hHHHhcCC---CeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 111 111122 23454443 48999999988 4566778888876521 1
Q ss_pred -CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHcc----Cc--c-c
Q 001395 544 -TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSG----ME--H-S 611 (1086)
Q Consensus 544 -~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~----~~--~-~ 611 (1086)
..++.+|++|+..- . .+...|+|...++ +.+..+.+..|...+|.+ +++.++.+ ++ . .
T Consensus 508 ~~~~~RiI~~t~~~l--~-~~~~~~~f~~~L~-------~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~ 577 (686)
T PRK15429 508 IQTDVRLIAATNRDL--K-KMVADREFRSDLY-------YRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDS 577 (686)
T ss_pred ccceEEEEEeCCCCH--H-HHHHcCcccHHHH-------hccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCC
Confidence 13577888887532 1 1122334543222 223334447787777754 33333322 22 2 3
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 612 LLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 612 l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
+++..++.|.....-.+-++|+++++.|+..
T Consensus 578 ~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 578 IPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred cCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 6778888888877666889999999888653
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.67 E-value=1.1e-07 Score=114.79 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=27.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+-|+|+.|+|||||.+.|+.+.
T Consensus 23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 23 SLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred cceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3567788999999999999999999999876
No 395
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.67 E-value=9.9e-07 Score=96.10 Aligned_cols=130 Identities=22% Similarity=0.295 Sum_probs=89.2
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC------------CCCCChhhhCCCCc
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR------------PDKIDPALLRPGRF 936 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~------------p~~lD~aLlrpgRF 936 (1086)
|.||||||+|.| +-+..+-|-+.+++- .--++|+|||+ |+-|+-.|+. |.
T Consensus 289 pGVLFIDEvHML-------------DIEcFsFlNrAlE~d---~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~ 350 (454)
T KOG2680|consen 289 PGVLFIDEVHML-------------DIECFSFLNRALEND---MAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM 350 (454)
T ss_pred cceEEEeeehhh-------------hhHHHHHHHHHhhhc---cCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh
Confidence 889999999976 223333333444321 23356777775 4567777776 65
Q ss_pred ceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 937 DRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 937 d~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+|.-.+++.++..+||++.+....+.- +..++.|......-+-+--.+++.-|.+.+.++. ...+..+|++.+..
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--GKVVEVDDIERVYR 427 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc--CceeehhHHHHHHH
Confidence 4777789999999999999997665542 3335666666665556666778888888888876 67788899988876
Q ss_pred hhCC
Q 001395 1016 HVQP 1019 (1086)
Q Consensus 1016 ~~~p 1019 (1086)
-+-.
T Consensus 428 LFlD 431 (454)
T KOG2680|consen 428 LFLD 431 (454)
T ss_pred HHhh
Confidence 5433
No 396
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=1.4e-06 Score=99.06 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=104.5
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHhCC-----------------------cEEEEeCCccccccccccHHHHHHHHH
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEAGL-----------------------NFLAVKGPELFSKWVGESEKAVRSLFA 862 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-----------------------~fi~v~~sel~~~~vGese~~ir~lf~ 862 (1086)
-+.+.++||+||.|+||+++|+++|..+-+ +|+.+...+ -++.+ ....+|++.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHH
Confidence 356778999999999999999999976421 222232211 01111 2445666655
Q ss_pred HHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcce
Q 001395 863 KAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 938 (1086)
Q Consensus 863 ~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~ 938 (1086)
.+. .+...|++||++|.+ .....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+ .
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM-------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-Q 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-e
Confidence 543 234569999999976 57889999999995 56689999999999999999999 88 4
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHH
Q 001395 939 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 982 (1086)
Q Consensus 939 ~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sga 982 (1086)
.+.|++|+.++..+.+... ... ....++..+.|-.+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~----~~~---~~~~~l~l~~G~p~~ 197 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQ----GIT---VPAYALKLNMGSPLK 197 (319)
T ss_pred eEeCCCCCHHHHHHHHHHc----CCc---hHHHHHHHcCCCHHH
Confidence 7889999998888777542 221 123456666665443
No 397
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.66 E-value=2.2e-08 Score=106.09 Aligned_cols=45 Identities=38% Similarity=0.450 Sum_probs=34.7
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
|++|.|++..|..+.-... | +.++||+||||||||++|+.+...+
T Consensus 2 f~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 6799999988887765432 2 4689999999999999999999765
No 398
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=106.13 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
|-.+++|....|.+|++||..+ ..+..++.|.+..|..+..+.+.-.++++|+.
T Consensus 434 RIAIARAliLkP~~i~LDEPTS------------ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 434 RIAIARALILKPELILLDEPTS------------ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred HHHHHHHHhcCCcEEEecCCch------------HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 5556677778899999999985 34667888888888888778888999999865
No 399
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2.2e-07 Score=113.70 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=27.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567789999999999999999999999865
No 400
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=6.7e-07 Score=102.02 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=107.5
Q ss_pred CcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------
Q 001395 415 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------ 470 (1086)
Q Consensus 415 Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~------------------------ 470 (1086)
-+....+.|...+... +-+..+||+||+|+||+++|+++|+.+-+
T Consensus 6 W~~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 6 WLQPTYQQITQAFQQG-----------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred chHHHHHHHHHHHHcC-----------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3456666666666544 23557999999999999999999987632
Q ss_pred cEEEEcccccccccchhhHHHHHHHHHH----hhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCC
Q 001395 471 NLFTVNGPEVVSQNYGESEQALHEVFDS----ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 546 (1086)
Q Consensus 471 ~~i~I~~s~l~s~~~Gese~~l~~vf~~----a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~ 546 (1086)
.|+.+...+ ++.+| -..++++.+. ...+...|++||++|.+ .....+.|++.|++ ..++
T Consensus 75 D~~~i~p~~--~~~I~--id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE--Pp~~ 137 (325)
T PRK06871 75 DFHILEPID--NKDIG--VDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE--PRPN 137 (325)
T ss_pred CEEEEcccc--CCCCC--HHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC--CCCC
Confidence 122232110 11111 2234444333 33445579999999988 35677899999988 5678
Q ss_pred eeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 547 VLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 547 viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
+++|.+|+.++.+.|.+++ |.. .+.+ ++|+.++..+.|..... ..+.....++..+.|
T Consensus 138 ~~fiL~t~~~~~llpTI~S--RC~-~~~~--------------~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g 195 (325)
T PRK06871 138 TYFLLQADLSAALLPTIYS--RCQ-TWLI--------------HPPEEQQALDWLQAQSS-----AEISEILTALRINYG 195 (325)
T ss_pred eEEEEEECChHhCchHHHh--hce-EEeC--------------CCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCC
Confidence 8999999999999999998 763 4555 88988888877775431 122234444555555
Q ss_pred C
Q 001395 627 F 627 (1086)
Q Consensus 627 f 627 (1086)
-
T Consensus 196 ~ 196 (325)
T PRK06871 196 R 196 (325)
T ss_pred C
Confidence 3
No 401
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.65 E-value=1.3e-07 Score=115.33 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3556788899999999999999999999874
No 402
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.64 E-value=2.2e-07 Score=113.15 Aligned_cols=202 Identities=20% Similarity=0.242 Sum_probs=123.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~ 483 (1086)
...|++++|.+...+.+.+.+... .....+|||+|++||||+++|+++.... +.+|+.+||..+...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 456789999999888877766543 0135569999999999999999987654 358999999886432
Q ss_pred c-----chhhH-------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c------
Q 001395 484 N-----YGESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------ 543 (1086)
Q Consensus 484 ~-----~Gese-------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~------ 543 (1086)
. .|... ..-..+|+.|.. ..||||||+.+ .......|+.+++.-. .
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCcc
Confidence 1 11100 001224555443 38999999988 3556677888776521 1
Q ss_pred -CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH-H---HHHHH----ccCc---cc
Q 001395 544 -TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE-I---LHALL----SGME---HS 611 (1086)
Q Consensus 544 -~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~-I---L~~~l----~~~~---~~ 611 (1086)
..++.||++|+..- ..+...|+|...+ ++.+..+.+..|...+|.+ | ++.++ .+.+ ..
T Consensus 336 ~~~~vRiI~st~~~l---~~l~~~g~f~~dL-------~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ 405 (520)
T PRK10820 336 VHVDVRVICATQKNL---VELVQKGEFREDL-------YYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPK 405 (520)
T ss_pred eeeeeEEEEecCCCH---HHHHHcCCccHHH-------HhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCC
Confidence 12467888876531 1122233443221 2223334446677666652 2 22222 2222 24
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 612 LLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 612 l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
+++..++.|..+..--+-++|.+++..|...
T Consensus 406 ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 406 LAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 6777788887765555778888888777543
No 403
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.7e-08 Score=114.25 Aligned_cols=47 Identities=32% Similarity=0.524 Sum_probs=39.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE 832 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~ 832 (1086)
...|.||.||+.+|+.+..+.. -.+++||+||||||||++|+-+...
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 3478999999999998877665 3567999999999999999988643
No 404
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.2e-07 Score=107.61 Aligned_cols=97 Identities=28% Similarity=0.449 Sum_probs=74.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc-ccchhh-HHHHHHHHHHhhc----CCCeEEEEccchhhcc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGES-EQALHEVFDSASQ----SAPAVVFIDELDAIAP 517 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s-~~~Ges-e~~l~~vf~~a~~----~~P~ILfIDEiD~l~~ 517 (1086)
..+|||.||+|+|||.||+.+|+-++++|...+|..+.. .|+|+- |..+..+++.|.. .+..|+||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 457999999999999999999999999999999999874 588864 6677888776543 2446999999999984
Q ss_pred CCCCC-C-ch-hHHHHHHHHHHHhhc
Q 001395 518 ARKDG-G-EE-LSQRMVATLLNLMDG 540 (1086)
Q Consensus 518 ~r~~~-~-~~-~~~rv~~~Ll~lLd~ 540 (1086)
+...- . .+ ...-+...||.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 32211 1 01 124567889999886
No 405
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.63 E-value=2e-07 Score=96.35 Aligned_cols=131 Identities=26% Similarity=0.427 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------------c
Q 001395 415 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----------------------N 471 (1086)
Q Consensus 415 Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~-----------------------~ 471 (1086)
|++.+++.|.+++... +.+..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 6778888888877655 33556999999999999999999987622 2
Q ss_pred EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCe
Q 001395 472 LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV 547 (1086)
Q Consensus 472 ~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~v 547 (1086)
++.++...-.. .+ .-..++.+.+.+. .....|++|||+|.+ ...+.+.|+..|+.. ..++
T Consensus 70 ~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEep--p~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEEP--PENT 133 (162)
T ss_dssp EEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHST--TTTE
T ss_pred eEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcCC--CCCE
Confidence 33443222100 11 1244556655432 234679999999988 567889999999984 5689
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeeh
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
.+|.+|+.++.+.|.+++ |+- .+.+
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc~-~i~~ 158 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RCQ-VIRF 158 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TSE-EEEE
T ss_pred EEEEEECChHHChHHHHh--hce-EEec
Confidence 999999999999999999 763 3443
No 406
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.62 E-value=9.4e-07 Score=96.29 Aligned_cols=116 Identities=25% Similarity=0.322 Sum_probs=78.9
Q ss_pred CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC------------CCCCCccccCCCCcce
Q 001395 504 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 571 (1086)
Q Consensus 504 P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~------------~d~idpaL~r~GRfdr 571 (1086)
|.||||||+|.| +..-...|-..+++ .---++|++||+ |..|+-.|+ ||
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~l-----DR 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLL-----DR 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHh-----hh
Confidence 568888888877 22333334344433 122356667765 334443333 34
Q ss_pred eeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccc
Q 001395 572 EIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKI 650 (1086)
Q Consensus 572 ~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~~ 650 (1086)
.+-|.. .+++.++..+||+..+......+.+..++.|......-+.+--..|+..|.+.|.+|....
T Consensus 350 ~lII~t------------~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~ 416 (454)
T KOG2680|consen 350 MLIIST------------QPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKV 416 (454)
T ss_pred hheeec------------ccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCce
Confidence 444422 7899999999999999988888888888888887777677777888999999998886544
No 407
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.9e-07 Score=116.15 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ ..+.....++++.|..+....+..||++||+.+.
T Consensus 471 Rv~iAraL~~~p~llllDEPts------------~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~ 526 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVS------------ALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV 526 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4445666667799999999884 4456667777777766544447889999998754
No 408
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=1.2e-07 Score=109.58 Aligned_cols=193 Identities=21% Similarity=0.211 Sum_probs=121.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEcccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~----lg~~~i~I~~s~l~s~ 483 (1086)
..+.+++|-+...+++++.+... .+.+.+||++|++||||+.+|++|... .+.+|+.+||..+...
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 34578999999888888877652 234678999999999999999988743 3669999999887654
Q ss_pred c-------------chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--------
Q 001395 484 N-------------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-------- 542 (1086)
Q Consensus 484 ~-------------~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-------- 542 (1086)
- .| ....-..+|+.|..+ .||+|||+.+ .......|+..||.-.
T Consensus 145 ~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 145 LQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred HHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCCC
Confidence 2 12 111223445555555 8999999988 3456678889888732
Q ss_pred -cCCCeeEEeccCCCCCCCccccCC-----CCcceeeehhhhhhhhhcccCCCCCCCHHHHH----HHHHHHH----ccC
Q 001395 543 -RTDGVLVIAATNRPDSIEPALRRP-----GRLDREIEIDMSFLFSLLKNSPAAVPSPAQRL----EILHALL----SGM 608 (1086)
Q Consensus 543 -~~~~viVIatTN~~d~idpaL~r~-----GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~----~IL~~~l----~~~ 608 (1086)
...+|.+|++||. .++.+++.. -|+...| ..|...+|. ..++.++ ++.
T Consensus 210 ~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I----------------~LPpLrER~~Di~~L~e~Fl~~~~~~l 271 (403)
T COG1221 210 PRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTI----------------TLPPLRERKEDILLLAEHFLKSEARRL 271 (403)
T ss_pred CcCCCceeeecccc--CHHHHHHhhcchhhhhcCcee----------------cCCChhhchhhHHHHHHHHHHHHHHHc
Confidence 1235888888874 222222220 0222222 456655553 2333333 333
Q ss_pred ccccc---hHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 609 EHSLL---DSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 609 ~~~l~---d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+.... +..+..+-...---+-+++.+++..++..+
T Consensus 272 ~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 272 GLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred CCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 33322 234555544443346789999999887665
No 409
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=9e-07 Score=101.73 Aligned_cols=168 Identities=16% Similarity=0.227 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------c
Q 001395 416 LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------N 471 (1086)
Q Consensus 416 l~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~------------------------~ 471 (1086)
+....+.+...+... +.+..+||+||+|+||+++|+++|+.+-+ .
T Consensus 7 l~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 7 LRPDYEQLVGSYQAG-----------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred ChHHHHHHHHHHHcC-----------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 445556666655443 34567999999999999999999987622 1
Q ss_pred EEEEccccc-ccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEE
Q 001395 472 LFTVNGPEV-VSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVI 550 (1086)
Q Consensus 472 ~i~I~~s~l-~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVI 550 (1086)
+..+....- ..-.+.+.......+......+...|++||++|.+ .....+.||+.|++ ..+++++|
T Consensus 76 ~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~fi 142 (334)
T PRK07993 76 YYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE--PPENTWFF 142 (334)
T ss_pred EEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC--CCCCeEEE
Confidence 222221100 00012222222333333344455679999999988 45677899999998 46789999
Q ss_pred eccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcH
Q 001395 551 AATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 629 (1086)
Q Consensus 551 atTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gfsg 629 (1086)
.+|+.++.+.|.+++ |.. .+.+ ++|+.++..+.|... .+ .+......++...+|-.+
T Consensus 143 L~t~~~~~lLpTIrS--RCq-~~~~--------------~~~~~~~~~~~L~~~---~~--~~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 143 LACREPARLLATLRS--RCR-LHYL--------------APPPEQYALTWLSRE---VT--MSQDALLAALRLSAGAPG 199 (334)
T ss_pred EEECChhhChHHHHh--ccc-cccC--------------CCCCHHHHHHHHHHc---cC--CCHHHHHHHHHHcCCCHH
Confidence 999999999999999 775 3455 888888877776532 12 344445556666666433
No 410
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.60 E-value=5.6e-07 Score=102.95 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=46.8
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhhCCC-CCCCcceeCCCCCcchHHHHHHHHHhCC-------cEEEEeC
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAVKG 842 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~-~~~gvLL~GPpGTGKTtLAkalA~~~~~-------~fi~v~~ 842 (1086)
++.|+++++.++.+++.... .|.. ..+.++|+|||||||||+|++||+.++. +++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 79999999988887765321 1222 3355899999999999999999998865 8888877
No 411
>PRK08116 hypothetical protein; Validated
Probab=98.60 E-value=1.5e-07 Score=105.13 Aligned_cols=129 Identities=17% Similarity=0.294 Sum_probs=83.0
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccc----cHHHHHHHHHHHHhcCCeEEEEecCchhh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLA 881 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGe----se~~ir~lf~~A~~~~p~ILflDEid~L~ 881 (1086)
..|++|+|++|||||+||.+||+++ +.+++.++.++++..+... .......+++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4579999999999999999999874 7889999988876543211 1112223344333 2349999999642
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC-CC----CChhhhCCCCc---ceEeecCCCCHHHHHHH
Q 001395 882 AIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP-DK----IDPALLRPGRF---DRLLYVGPPNETDREEI 953 (1086)
Q Consensus 882 ~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p-~~----lD~aLlrpgRF---d~~I~~~~P~~~eR~~I 953 (1086)
...+..+.+|...++.... .+..+|+|||.+ +. ++..+.. |+ ...|.+.-++. |.++
T Consensus 191 ----------~~t~~~~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 191 ----------RDTEWAREKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred ----------CCCHHHHHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHH
Confidence 2345667777777776432 345688888865 22 4556665 53 23566666664 4444
Q ss_pred HH
Q 001395 954 FR 955 (1086)
Q Consensus 954 l~ 955 (1086)
.+
T Consensus 256 ~~ 257 (268)
T PRK08116 256 AK 257 (268)
T ss_pred HH
Confidence 43
No 412
>PRK13409 putative ATPase RIL; Provisional
Probab=98.60 E-value=2.9e-07 Score=113.46 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||++||+.+ +.+......+.+.|..+....+..||++||+++.
T Consensus 461 RvaiAraL~~~p~llLLDEPt~------------~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~ 516 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSA------------HLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM 516 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCcc------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 5556777778899999999885 3344445555555554433446788999998765
No 413
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.60 E-value=7.5e-07 Score=107.61 Aligned_cols=78 Identities=22% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc------ccc----------------------cc
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------WVG----------------------ES 853 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~------~vG----------------------es 853 (1086)
|+.+...+|+.||||+|||+++-.++... |-+.+.+...|-... ..| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56666679999999999999999886643 556666665442110 000 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCchhhh
Q 001395 854 EKAVRSLFAKARANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 854 e~~ir~lf~~A~~~~p~ILflDEid~L~~ 882 (1086)
+..+..+.+.+....|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 34556666777777899999999987743
No 414
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.60 E-value=1.7e-07 Score=115.32 Aligned_cols=135 Identities=21% Similarity=0.287 Sum_probs=90.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEcccccccccchhhH--HHHH-H--HHHH--hhcCCCeEEEEccchhh
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNYGESE--QALH-E--VFDS--ASQSAPAVVFIDELDAI 515 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s~l~s~~~Gese--~~l~-~--vf~~--a~~~~P~ILfIDEiD~l 515 (1086)
.+|||.|+||||||++|+++++.++. +|+.+..........|... ..+. . .|+. .......+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998754 5888875322223333321 0000 0 0110 00011249999999988
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhccc-----------cCCCeeEEeccCCCC---CCCccccCCCCcceeeehhhhhhh
Q 001395 516 APARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD---SIEPALRRPGRLDREIEIDMSFLF 581 (1086)
Q Consensus 516 ~~~r~~~~~~~~~rv~~~Ll~lLd~l~-----------~~~~viVIatTN~~d---~idpaL~r~GRfdr~I~i~l~~~~ 581 (1086)
...++..|+..|+.-. ...++.||+++|..+ .+.+++.. ||...+.+.
T Consensus 97 -----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~----- 158 (589)
T TIGR02031 97 -----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE----- 158 (589)
T ss_pred -----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC-----
Confidence 4677888999886432 113588999999865 67788887 888776662
Q ss_pred hhcccCCCCCCCHHHHHHHHHHHH
Q 001395 582 SLLKNSPAAVPSPAQRLEILHALL 605 (1086)
Q Consensus 582 ~~~~~v~~~~Pd~~eR~~IL~~~l 605 (1086)
.+|+.++|.+|++..+
T Consensus 159 --------~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 --------DVASQDLRVEIVRRER 174 (589)
T ss_pred --------CCCCHHHHHHHHHHHH
Confidence 4677888888887755
No 415
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.1e-06 Score=100.11 Aligned_cols=169 Identities=21% Similarity=0.295 Sum_probs=107.6
Q ss_pred cHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------------EEE
Q 001395 416 LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------------LFT 474 (1086)
Q Consensus 416 l~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------------~i~ 474 (1086)
+...++.+...+... +-+..+||+||+|+||+++|.++|+.+-+. +..
T Consensus 9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 455666666665443 235569999999999999999999876321 222
Q ss_pred Ec-cccccccc--chhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCe
Q 001395 475 VN-GPEVVSQN--YGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV 547 (1086)
Q Consensus 475 I~-~s~l~s~~--~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~v 547 (1086)
+. .++-.+.. ..-.-..++++.+.+. .+.-.|++||++|.+ .....+.|++.|++ ..+++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~~ 144 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE--PSPGR 144 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC--CCCCC
Confidence 21 00000000 0001223455544332 233469999999988 35677899999988 35678
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCC
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 627 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gf 627 (1086)
+||.+|+.++.+.|.+++ |+. .+.+ +.|+.++..+.|... + .++.+...++...+|-
T Consensus 145 ~fiL~~~~~~~lLpTIrS--RCq-~i~~--------------~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~ 201 (319)
T PRK08769 145 YLWLISAQPARLPATIRS--RCQ-RLEF--------------KLPPAHEALAWLLAQ----G--VSERAAQEALDAARGH 201 (319)
T ss_pred eEEEEECChhhCchHHHh--hhe-EeeC--------------CCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCC
Confidence 899999999999999999 764 4555 888888777777542 2 3344455566666664
Q ss_pred cHHH
Q 001395 628 VGAD 631 (1086)
Q Consensus 628 sgaD 631 (1086)
.+..
T Consensus 202 p~~A 205 (319)
T PRK08769 202 PGLA 205 (319)
T ss_pred HHHH
Confidence 4433
No 416
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3.2e-07 Score=105.27 Aligned_cols=133 Identities=22% Similarity=0.341 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------------------EEEEccccccc--------------
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------------------LFTVNGPEVVS-------------- 482 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~~-------------------------~i~I~~s~l~s-------------- 482 (1086)
+.+..+||+||+|+||+++|+.+|+.+.+. +..+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 457789999999999999999999877432 12221110000
Q ss_pred ccch---------hhHHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeE
Q 001395 483 QNYG---------ESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 549 (1086)
Q Consensus 483 ~~~G---------ese~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viV 549 (1086)
...| -.-..++.+.+.+ ..+...|++||++|.+ .....+.||+.|++ ..+++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhcC--CCcCcEE
Confidence 0000 0112344444432 2334569999999988 35677899999986 5678999
Q ss_pred EeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHH
Q 001395 550 IAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHAL 604 (1086)
Q Consensus 550 IatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~ 604 (1086)
|.+|++++.+.|.+++ |+ ..+.| ++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~--------------~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPM--------------TVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEe--------------cCCCHHHHHHHHHHc
Confidence 9999999999999999 87 46666 889999888888753
No 417
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.58 E-value=4.6e-07 Score=111.78 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=41.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~ 471 (1086)
.-++++.|.++.++.++..+... ++++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~--------------~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQK--------------RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcC--------------CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34578999999998888776432 379999999999999999999998654
No 418
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.57 E-value=1.1e-06 Score=100.57 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=47.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHhhhcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEEEcc
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTLSSLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFTVNG 477 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi-~~~~~vLL~GPpGTGKTtLAralA~~lg~-------~~i~I~~ 477 (1086)
++.|+++.+.+|.+.+.... .|. ...+.++|+|||||||||||++|++.++. +++.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 89999999888888775541 222 34577899999999999999999999866 6777766
No 419
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.56 E-value=2.7e-08 Score=99.83 Aligned_cols=107 Identities=27% Similarity=0.418 Sum_probs=72.5
Q ss_pred ccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC---CcEEEEeCCccccccccccH
Q 001395 778 GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSKWVGESE 854 (1086)
Q Consensus 778 ~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~---~~fi~v~~sel~~~~vGese 854 (1086)
+|.....+++++.+... ......|+|+|++||||+++|++|....+ .+|+.+++..+-
T Consensus 1 vG~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 35566666666666532 13345699999999999999999988764 366666655432
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 855 KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 855 ~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
.++++.+ ...+|||+|||.| ....+..|+..|+... ..++.+|++|..+
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-------------SPEAQRRLLDLLKRQE-RSNVRLIASSSQD 110 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS--------------HHHHHHHHHHHHHCT-TTTSEEEEEECC-
T ss_pred ---HHHHHHc---CCCEEEECChHHC-------------CHHHHHHHHHHHHhcC-CCCeEEEEEeCCC
Confidence 3455554 4559999999965 6778888888887644 5577888877654
No 420
>PRK08116 hypothetical protein; Validated
Probab=98.55 E-value=2.6e-07 Score=103.17 Aligned_cols=102 Identities=28% Similarity=0.419 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccch----hhHHHHHHHHHHhhcCCCeEEEEccchhh
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG----ESEQALHEVFDSASQSAPAVVFIDELDAI 515 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~G----ese~~l~~vf~~a~~~~P~ILfIDEiD~l 515 (1086)
.+.+++|+|++|||||+||.++|+++ +..++.++..+++..... ........+++... ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34679999999999999999999986 778888888877654321 11112223444333 2359999998532
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 516 APARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 516 ~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
. . .......|+++++..... +..+|.|||..
T Consensus 191 ~------~---t~~~~~~l~~iin~r~~~-~~~~IiTsN~~ 221 (268)
T PRK08116 191 R------D---TEWAREKVYNIIDSRYRK-GLPTIVTTNLS 221 (268)
T ss_pred C------C---CHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 1 1 233456677777764333 34566677753
No 421
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.54 E-value=2.8e-07 Score=110.91 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=35.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
+|+++.|.+..++.+.-. +..+.+++|+||||||||+++++++..+
T Consensus 190 d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 568899988775543322 2345789999999999999999999754
No 422
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.53 E-value=8.3e-07 Score=111.12 Aligned_cols=160 Identities=17% Similarity=0.237 Sum_probs=93.7
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHH--------HhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-------CCcEEEE
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAF--------KRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GLNFLAV 840 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~--------~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-------~~~fi~v 840 (1086)
.|.|.+.+|+.|.-.+-......... ....++...+|||+|+||||||.+|++++... |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 57899999987765543221100000 00223445579999999999999999998764 2344444
Q ss_pred eCCccccccccccHHHHHHHHH--HHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------
Q 001395 841 KGPELFSKWVGESEKAVRSLFA--KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------- 909 (1086)
Q Consensus 841 ~~sel~~~~vGese~~ir~lf~--~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------- 909 (1086)
.+..... +.+...... .++ ....+..++++|||++.+ ....+..|+..|+...
T Consensus 531 gLTa~~~-~~d~~tG~~--~le~GaLvlAdgGtL~IDEidkm-------------s~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 531 GLTASIK-FNESDNGRA--MIQPGAVVLANGGVCCIDELDKC-------------HNESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred cccchhh-hcccccCcc--cccCCcEEEcCCCeEEecchhhC-------------CHHHHHHHHHHHhCCEEEEecCCcc
Confidence 4332211 000000000 000 011123459999999965 5677888998886432
Q ss_pred --cCCCEEEEEecCCCC-------------CCChhhhCCCCcceEee-cCCCCHHHHHHH
Q 001395 910 --QRVNVTVIAATNRPD-------------KIDPALLRPGRFDRLLY-VGPPNETDREEI 953 (1086)
Q Consensus 910 --~~~~v~VI~aTN~p~-------------~lD~aLlrpgRFd~~I~-~~~P~~~eR~~I 953 (1086)
-..++.||+|+|... .+.++|++ |||.+.. ...|+.+.=..|
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 124789999999741 25799999 9997544 455554443333
No 423
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=4.5e-07 Score=103.81 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=95.9
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCC-------------------------cEEEEeCCc---ccccc-ccccHHHH
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGL-------------------------NFLAVKGPE---LFSKW-VGESEKAV 857 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------------------~fi~v~~se---l~~~~-vGese~~i 857 (1086)
+.+..+||+||+|+|||++|+++|+.+.+ +|+.+.... --++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56778999999999999999999987532 234443311 00000 00135567
Q ss_pred HHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCC
Q 001395 858 RSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 933 (1086)
Q Consensus 858 r~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrp 933 (1086)
|++.+.+.. +...|+++|+++.+ +...++.|++.|+... .++.+|++|++++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S- 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS- 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH-
Confidence 887777653 34569999999955 6788999999998653 457788899999999999988
Q ss_pred CCcceEeecCCCCHHHHHHHHHH
Q 001395 934 GRFDRLLYVGPPNETDREEIFRI 956 (1086)
Q Consensus 934 gRFd~~I~~~~P~~~eR~~Il~~ 956 (1086)
|+ +.+.|++|+.++..+.|..
T Consensus 163 -Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 -RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -Hh-hhhcCCCCCHHHHHHHHHh
Confidence 77 5788999999888777754
No 424
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.52 E-value=3.5e-06 Score=91.43 Aligned_cols=175 Identities=15% Similarity=0.249 Sum_probs=122.8
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-CC----------------
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GL---------------- 835 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-~~---------------- 835 (1086)
+++.+.+.++....++..... ..-.++++|||+|+||-|.+.++-+++ |.
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 344556666666666554431 122469999999999999999997764 21
Q ss_pred ------------cEEEEeCCccccccccccHH-HHHHHHHHHHhcC---------CeEEEEecCchhhhhcCCCCCCCCc
Q 001395 836 ------------NFLAVKGPELFSKWVGESEK-AVRSLFAKARANA---------PSIIFFDEIDGLAAIRGKESDGVSV 893 (1086)
Q Consensus 836 ------------~fi~v~~sel~~~~vGese~-~ir~lf~~A~~~~---------p~ILflDEid~L~~~r~~~~~~~~~ 893 (1086)
..+++++++ .|..++ -++++++...+.. -.|++|-|+|.|
T Consensus 78 ~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L------------- 139 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL------------- 139 (351)
T ss_pred CceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-------------
Confidence 112233333 233333 3566666655443 359999999966
Q ss_pred cHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHH
Q 001395 894 SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIREL 972 (1086)
Q Consensus 894 ~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~L 972 (1086)
+..++..|-+.|+.. ..++.+|..+|....|-+++.+ |+ ..|.++.|+.++...++...+++.++.- ..-+..+
T Consensus 140 T~dAQ~aLRRTMEkY--s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 140 TRDAQHALRRTMEKY--SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred hHHHHHHHHHHHHHH--hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 677888899999866 3478899999999999999988 76 4788999999999999999998877663 3346677
Q ss_pred HHHcCCCcHHHHHHH
Q 001395 973 ACLSEGCTGADISLI 987 (1086)
Q Consensus 973 a~~t~g~sgadl~~l 987 (1086)
|+.++| +++..
T Consensus 215 a~kS~~----nLRrA 225 (351)
T KOG2035|consen 215 AEKSNR----NLRRA 225 (351)
T ss_pred HHHhcc----cHHHH
Confidence 777776 55443
No 425
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.52 E-value=1.6e-06 Score=93.92 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=121.6
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-C--Cc--------E------
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-G--VN--------L------ 472 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-g--~~--------~------ 472 (1086)
++.+.+.++....++...... .-.++++|||+|+||-|.+-++-+++ | ++ |
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~------------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~k 79 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTG------------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKK 79 (351)
T ss_pred hhhcccHHHHHHHHHHhcccC------------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCc
Confidence 445666666666666544311 23479999999999999999998876 2 11 1
Q ss_pred ------------EEEcccccccccchhhHH-HHHHHHHHhhcCC---------CeEEEEccchhhccCCCCCCchhHHHH
Q 001395 473 ------------FTVNGPEVVSQNYGESEQ-ALHEVFDSASQSA---------PAVVFIDELDAIAPARKDGGEELSQRM 530 (1086)
Q Consensus 473 ------------i~I~~s~l~s~~~Gese~-~l~~vf~~a~~~~---------P~ILfIDEiD~l~~~r~~~~~~~~~rv 530 (1086)
++++.+| .|..++ .+.++.++..+.+ -.|++|-|+|.| .+++
T Consensus 80 klEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----------T~dA 143 (351)
T KOG2035|consen 80 KLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----------TRDA 143 (351)
T ss_pred eEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------hHHH
Confidence 2222222 233322 3455555433322 359999999888 5778
Q ss_pred HHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc
Q 001395 531 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH 610 (1086)
Q Consensus 531 ~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~ 610 (1086)
...|...|+.+. ++.-+|..+|....+-+++++ |. -.|.+ |.|+.++...++...+.+.++
T Consensus 144 Q~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRv--------------paps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 144 QHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRV--------------PAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred HHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeC--------------CCCCHHHHHHHHHHHHHHhcc
Confidence 889999998864 456788889999999999988 54 23444 999999999999999999999
Q ss_pred ccchHHHHHHHHHcCC
Q 001395 611 SLLDSEVEYLSMATHG 626 (1086)
Q Consensus 611 ~l~d~~l~~La~~t~G 626 (1086)
.++...+..+++.+.|
T Consensus 205 ~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 205 QLPKELLKRIAEKSNR 220 (351)
T ss_pred cCcHHHHHHHHHHhcc
Confidence 9898889999998877
No 426
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.51 E-value=3.2e-06 Score=94.37 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=114.5
Q ss_pred ccCCcHHHHH---HHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEcccc
Q 001395 412 KLGGLSKEYA---ILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPE 479 (1086)
Q Consensus 412 ~I~Gl~~~~~---~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg---------~~~i~I~~s~ 479 (1086)
.-+|.....+ .+.+++..| ......++||+|++|.|||++++..++... .+++.+..+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P---------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP---------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC---------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 3456655444 444444444 112345699999999999999999886542 3566665433
Q ss_pred cccc--------------c-ch-hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc
Q 001395 480 VVSQ--------------N-YG-ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 543 (1086)
Q Consensus 480 l~s~--------------~-~G-ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~ 543 (1086)
--+. + .. ...+.-..+..-.+..++.+|+|||+|.++.. + .+-..++++.|..+..
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-----s---~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-----S---YRKQREFLNALKFLGN 177 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-----c---HHHHHHHHHHHHHHhh
Confidence 2111 0 00 11222223334445567789999999998631 1 1223455566665555
Q ss_pred CCCeeEEeccCC--CC--CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCC-HHHHHHHHHHHHccCccc----cch
Q 001395 544 TDGVLVIAATNR--PD--SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPS-PAQRLEILHALLSGMEHS----LLD 614 (1086)
Q Consensus 544 ~~~viVIatTN~--~d--~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd-~~eR~~IL~~~l~~~~~~----l~d 614 (1086)
.-++.+|+.... .. .-|+-+.+ ||+. +.+ |... .++...++..+-...++. +.+
T Consensus 178 eL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~L--------------p~W~~d~ef~~LL~s~e~~LPLr~~S~l~~ 240 (302)
T PF05621_consen 178 ELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FEL--------------PRWELDEEFRRLLASFERALPLRKPSNLAS 240 (302)
T ss_pred ccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccC--------------CCCCCCcHHHHHHHHHHHhCCCCCCCCCCC
Confidence 555555554432 11 23566666 8863 333 4322 233445555554444432 333
Q ss_pred HH-HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 615 SE-VEYLSMATHGFVGADLAALCNEAALVCLRRYS 648 (1086)
Q Consensus 615 ~~-l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~ 648 (1086)
.+ ...+-..+.|.. +++..|+..|+..|++...
T Consensus 241 ~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 241 PELARRIHERSEGLI-GELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred HHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCC
Confidence 33 467777788865 5788899999999987543
No 427
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.51 E-value=2.1e-06 Score=103.16 Aligned_cols=198 Identities=24% Similarity=0.305 Sum_probs=129.5
Q ss_pred CcceeCCCCCcchHHHHHHHHHh----------CCcEEEEeCCccccc----------cccccHH------HHHHHHHHH
Q 001395 811 GILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGPELFSK----------WVGESEK------AVRSLFAKA 864 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v~~sel~~~----------~vGese~------~ir~lf~~A 864 (1086)
.+.+.|-||||||.+++.+-+++ ...+++||+-.+.+. +.|+... .+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 47888999999999999987643 468899998665332 2333211 122222211
Q ss_pred -HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcc-ccCCCEEEEEecCCCCCCChhhhC--CCCcc-eE
Q 001395 865 -RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLR--PGRFD-RL 939 (1086)
Q Consensus 865 -~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~-~~~~~v~VI~aTN~p~~lD~aLlr--pgRFd-~~ 939 (1086)
-...++||+|||.|.|+... ..+ |.+.+|-. .+...++||+..|.++....-|.. ..|++ +.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~----------QdV---lYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS----------QDV---LYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc----------HHH---HHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 12457899999999886432 223 33344432 345689999999988775444431 12443 57
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHhc-----CCCCCCHHHHHH
Q 001395 940 LYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTG--ADISLICREAAISAIEENL-----DASRITMQHLKT 1012 (1086)
Q Consensus 940 I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sg--adl~~l~~~A~~~A~~~~~-----~~~~It~~d~~~ 1012 (1086)
|.|.+++..+..+|+...++....-....++-+|+.-...+| +....+|++|...|-.+.. ....|++.|+..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~ 650 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVME 650 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHH
Confidence 889999999999999999987743333334444444433443 5566789999988877664 124689999999
Q ss_pred HHHhhCCCc
Q 001395 1013 AIRHVQPSE 1021 (1086)
Q Consensus 1013 al~~~~p~~ 1021 (1086)
|+..+..+.
T Consensus 651 Ai~em~~~~ 659 (767)
T KOG1514|consen 651 AINEMLASP 659 (767)
T ss_pred HHHHHhhhh
Confidence 999876653
No 428
>PLN03073 ABC transporter F family; Provisional
Probab=98.50 E-value=2e-07 Score=116.98 Aligned_cols=30 Identities=37% Similarity=0.368 Sum_probs=26.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 467 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~ 467 (1086)
++.+.++..+.|.||+|+|||||.++|+..
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 356778889999999999999999999964
No 429
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.49 E-value=5.6e-07 Score=99.46 Aligned_cols=170 Identities=21% Similarity=0.213 Sum_probs=115.9
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc------EEEEcccccccc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------LFTVNGPEVVSQ 483 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~------~i~I~~s~l~s~ 483 (1086)
+.++++.++.+..+.+++..+. -.++|+|||||||||+...+.|..+..+ +.+++.++-.+-
T Consensus 40 l~dv~~~~ei~st~~~~~~~~~------------lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi 107 (360)
T KOG0990|consen 40 LGIVIKQEPIWSTENRYSGMPG------------LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI 107 (360)
T ss_pred hhhHhcCCchhhHHHHhccCCC------------CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC
Confidence 4688888988888888755441 1279999999999999999999987542 233444433222
Q ss_pred cchhhHHHHHHHHHHhhc-------CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 484 NYGESEQALHEVFDSASQ-------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~-------~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
+..+.-...|..+.. ..+..+++||+|++ .+.+..+|...++.+.. ++.|+..+|.+
T Consensus 108 ---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t~--n~rF~ii~n~~ 171 (360)
T KOG0990|consen 108 ---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYTA--NTRFATISNPP 171 (360)
T ss_pred ---cchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhcc--ceEEEEeccCh
Confidence 112223344555542 36779999999988 46667777777776544 45566778999
Q ss_pred CCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHc
Q 001395 557 DSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT 624 (1086)
Q Consensus 557 d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t 624 (1086)
..+.|++++ ||.+ + .+.+-+..+...++..++.........+....+++..
T Consensus 172 ~ki~pa~qs--Rctr-f--------------rf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s 222 (360)
T KOG0990|consen 172 QKIHPAQQS--RCTR-F--------------RFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLS 222 (360)
T ss_pred hhcCchhhc--cccc-C--------------CCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHh
Confidence 999999988 7754 2 2366777777788888777666555555555544433
No 430
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.49 E-value=5.9e-07 Score=96.54 Aligned_cols=178 Identities=24% Similarity=0.351 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---cEEEEccccccc-----c--
Q 001395 414 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV---NLFTVNGPEVVS-----Q-- 483 (1086)
Q Consensus 414 ~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~---~~i~I~~s~l~s-----~-- 483 (1086)
+|-+.+++.|.+.+... +...++|+||.|+|||+|++.+.+.+.- ..+.++...... .
T Consensus 2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 46677777777765432 3567999999999999999999988722 111111100000 0
Q ss_pred ----------------------------cchhhHHHHHHHHHHhhcC-CCeEEEEccchhhc-cCCCCCCchhHHHHHHH
Q 001395 484 ----------------------------NYGESEQALHEVFDSASQS-APAVVFIDELDAIA-PARKDGGEELSQRMVAT 533 (1086)
Q Consensus 484 ----------------------------~~Gese~~l~~vf~~a~~~-~P~ILfIDEiD~l~-~~r~~~~~~~~~rv~~~ 533 (1086)
........+..+++..... ...||+|||++.+. ... ........
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHH
Confidence 0011233455555554433 34799999999996 211 13566777
Q ss_pred HHHHhhccccCCCeeEEeccCCCC------CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc
Q 001395 534 LLNLMDGVCRTDGVLVIAATNRPD------SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG 607 (1086)
Q Consensus 534 Ll~lLd~l~~~~~viVIatTN~~d------~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~ 607 (1086)
|.++++......++.+|.++.... .-...+. +|+.. +.+ ++.+.++..++++...+.
T Consensus 144 l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l--------------~~l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 144 LRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IEL--------------KPLSKEEAREFLKELFKE 206 (234)
T ss_dssp HHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE------------------HHHHHHHHHHHHHC
T ss_pred HHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEE--------------eeCCHHHHHHHHHHHHHH
Confidence 888887755556655555543321 1112222 36665 777 889999999999998777
Q ss_pred Ccccc--chHHHHHHHHHcCCC
Q 001395 608 MEHSL--LDSEVEYLSMATHGF 627 (1086)
Q Consensus 608 ~~~~l--~d~~l~~La~~t~Gf 627 (1086)
. ..+ ++.+++.+...+.|.
T Consensus 207 ~-~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 207 L-IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp C-------HHHHHHHHHHHTT-
T ss_pred h-hcccCCHHHHHHHHHHhCCC
Confidence 6 433 788899999988885
No 431
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.47 E-value=2e-06 Score=103.19 Aligned_cols=180 Identities=26% Similarity=0.348 Sum_probs=114.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcccccccc---c-------chhhH------HHHHHHHHH
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEVVSQ---N-------YGESE------QALHEVFDS 498 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~s~l~s~---~-------~Gese------~~l~~vf~~ 498 (1086)
..+.+.|-||||||..++.+.+.| ...|++||+..+.+. | -|+.. ..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 357788999999999999888755 347899999887653 1 12111 112222221
Q ss_pred h-hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-cCCCeeEEeccCCCCCCCccccCCCCcceeeehh
Q 001395 499 A-SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPALRRPGRLDREIEID 576 (1086)
Q Consensus 499 a-~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~ 576 (1086)
. ....++||+|||+|.|+.. -..-|++++|... ....++||+..|..+....-|.. |..-.+.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr-----------~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~n--rvsSRlg-- 567 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTR-----------SQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMN--RVSSRLG-- 567 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcc-----------cHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhcc--chhhhcc--
Confidence 1 2345789999999999743 2346777888764 34578888888877654433321 3322222
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHh
Q 001395 577 MSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA--DLAALCNEAALVCLRRY 647 (1086)
Q Consensus 577 l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gfsga--DL~~L~~eA~~~a~rr~ 647 (1086)
++++.|.+++..|..+|+...+.... ......++.+|+.-...+|. ....+|+.|+..|-.+.
T Consensus 568 -------~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 568 -------LTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERN 632 (767)
T ss_pred -------ceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhc
Confidence 24566699999999999999887763 23445556566655444442 33457777776665543
No 432
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.9e-06 Score=98.17 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=99.7
Q ss_pred CcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------------c
Q 001395 415 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----------------------N 471 (1086)
Q Consensus 415 Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~-----------------------~ 471 (1086)
-+.+..+.++..+... +-+..+||+||.|+||+++|+.+|+.+-+ .
T Consensus 7 Wl~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 7 WLVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred cHHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 3556677777766544 23557999999999999999999987622 1
Q ss_pred EEEEcccccccccchhhHHHHHHHHHH----hhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCe
Q 001395 472 LFTVNGPEVVSQNYGESEQALHEVFDS----ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV 547 (1086)
Q Consensus 472 ~i~I~~s~l~s~~~Gese~~l~~vf~~----a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~v 547 (1086)
|+.+.... .++.+ .-..++.+-+. ...+...|++||++|.+ .....+.|++.|++ ...++
T Consensus 76 ~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE--Pp~~t 139 (319)
T PRK06090 76 LHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE--PAPNC 139 (319)
T ss_pred EEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC--CCCCe
Confidence 23332110 01111 11233444332 23344579999999988 35677899999988 45679
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
++|..|+.++.+.|.+++ |+. .+.+ ++|+.++..+.|..
T Consensus 140 ~fiL~t~~~~~lLpTI~S--RCq-~~~~--------------~~~~~~~~~~~L~~ 178 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVS--RCQ-QWVV--------------TPPSTAQAMQWLKG 178 (319)
T ss_pred EEEEEECChhhChHHHHh--cce-eEeC--------------CCCCHHHHHHHHHH
Confidence 999999999999999999 764 5555 88998888777754
No 433
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.45 E-value=4.8e-07 Score=108.09 Aligned_cols=199 Identities=20% Similarity=0.239 Sum_probs=121.8
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccc-
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY- 485 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~- 485 (1086)
+..+.|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~ 207 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE 207 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH
Confidence 346777777777766655432 1234679999999999999999998765 45899999987732211
Q ss_pred ----hhh-------HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CC
Q 001395 486 ----GES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TD 545 (1086)
Q Consensus 486 ----Ges-------e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~ 545 (1086)
|.. .......|+.+ ....|||||++.+ ...+...|+..++.-. . ..
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 208 SELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceeee
Confidence 000 00001112222 2358999999988 3566777888776421 1 12
Q ss_pred CeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHcc----Cc---cccch
Q 001395 546 GVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSG----ME---HSLLD 614 (1086)
Q Consensus 546 ~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~----~~---~~l~d 614 (1086)
++.+|++|+..- . .+...|+|...+ +..+..+.+..|...+|.+ +++.++.. .+ ..+++
T Consensus 274 ~~rii~~~~~~l--~-~~~~~~~~~~~L-------~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 343 (445)
T TIGR02915 274 DVRIVCATNQDL--K-RMIAEGTFREDL-------FYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTD 343 (445)
T ss_pred ceEEEEecCCCH--H-HHHHcCCccHHH-------HHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 567888886532 1 122234554332 2233445557788777764 33333322 12 34678
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 615 ~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
..++.|..+..-.+.++|++++..|+..
T Consensus 344 ~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 344 DALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 8888888877666789999998887653
No 434
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=110.23 Aligned_cols=130 Identities=22% Similarity=0.312 Sum_probs=98.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccc------cc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPE------VV 481 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~------l~ 481 (1086)
+.|+|+++.+..|-++|.... ...... .+...++|.||.|+|||-||+++|..+ .-.++.|+.++ +.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr-~gl~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSR-AGLKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhh-cccCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 579999999999999998772 111111 467889999999999999999999987 23689999885 22
Q ss_pred c---ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc---------CCCeeE
Q 001395 482 S---QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR---------TDGVLV 549 (1086)
Q Consensus 482 s---~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~---------~~~viV 549 (1086)
+ .|+|..+. ..+.+..+....+||+|||||.. +..+...|+.+||...- -++++|
T Consensus 638 gsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 638 GSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred CCCcccccchhH--HHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 2 25665543 56777777777799999999866 56788888899987532 257999
Q ss_pred EeccCCCC
Q 001395 550 IAATNRPD 557 (1086)
Q Consensus 550 IatTN~~d 557 (1086)
|+|+|.-.
T Consensus 705 IMTsn~~~ 712 (898)
T KOG1051|consen 705 IMTSNVGS 712 (898)
T ss_pred EEecccch
Confidence 99998643
No 435
>PRK08181 transposase; Validated
Probab=98.42 E-value=4.4e-07 Score=101.08 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=66.7
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCccccccccc-cHHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~~vGe-se~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
...+++|+||||||||+||.++|.+ .|..++.++.++++...... ........+.... .+.+|+|||++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~-- 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT-- 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc--
Confidence 3467999999999999999999875 47788888888876643211 1122333444433 45699999998652
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
........|+..++..... .-+|.|||.+
T Consensus 181 ---------~~~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 181 ---------KDQAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred ---------CCHHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 1233445566666543332 3588888876
No 436
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.41 E-value=3.1e-06 Score=104.15 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=27.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++|++.+
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567888999999999999999999999875
No 437
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.40 E-value=5.9e-06 Score=95.16 Aligned_cols=160 Identities=24% Similarity=0.297 Sum_probs=103.5
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeC--------C
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG--------P 843 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~--------s 843 (1086)
..|.-++|++..|..|.-.... +.-.|+||-|+.||||||+||+||..+.---+...| +
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4577789999988876544221 234579999999999999999999875311111111 0
Q ss_pred ------------------------ccccccccccHHHH------HHH-------HH---HHHhcCCeEEEEecCchhhhh
Q 001395 844 ------------------------ELFSKWVGESEKAV------RSL-------FA---KARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 844 ------------------------el~~~~vGese~~i------r~l-------f~---~A~~~~p~ILflDEid~L~~~ 883 (1086)
.++.-=.|.++..+ ..+ |. .|+ .+..||++||+-.|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEeccccc---
Confidence 01111122233311 111 11 111 22349999999855
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCC-CCCChhhhCCCCcceEeecCCC-CHHHH
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRP-DKIDPALLRPGRFDRLLYVGPP-NETDR 950 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p-~~lD~aLlrpgRFd~~I~~~~P-~~~eR 950 (1086)
.+.+++.||..+.... ...++++|+|.|.- ..|-|.|+. ||...|.+..| +.++|
T Consensus 157 ----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~r 224 (423)
T COG1239 157 ----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEER 224 (423)
T ss_pred ----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHH
Confidence 7899999999986421 13368888988865 358888998 99988887655 57889
Q ss_pred HHHHHHHHhc
Q 001395 951 EEIFRIHLRK 960 (1086)
Q Consensus 951 ~~Il~~~l~~ 960 (1086)
.+|.++.+.-
T Consensus 225 v~Ii~r~~~f 234 (423)
T COG1239 225 VEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHh
Confidence 9999876653
No 438
>PRK12377 putative replication protein; Provisional
Probab=98.39 E-value=7.5e-07 Score=98.07 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=64.9
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccH--HHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESE--KAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese--~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
..+++|+||||||||+||.|||+++ +..++.++.++++........ .....++... ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3679999999999999999999875 677888888887654321100 0112333333 345699999997541
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
.++..+..|...++.-. .....+|.+||..
T Consensus 177 ---------~s~~~~~~l~~ii~~R~-~~~~ptiitSNl~ 206 (248)
T PRK12377 177 ---------ETKNEQVVLNQIIDRRT-ASMRSVGMLTNLN 206 (248)
T ss_pred ---------CCHHHHHHHHHHHHHHH-hcCCCEEEEcCCC
Confidence 23334555666665432 2245678889965
No 439
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.39 E-value=3.6e-06 Score=103.50 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++|++.+
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567788889999999999999999999865
No 440
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.39 E-value=6.6e-06 Score=99.45 Aligned_cols=200 Identities=17% Similarity=0.224 Sum_probs=115.3
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc------
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF------ 846 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~------ 846 (1086)
+.+|+.-...-.++++.+++... .+....+-+||+|||||||||++++||++++..+.+...+..+
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 44555555555566666665211 1223334578899999999999999999999988876443221
Q ss_pred -cccccccH------HH---HHHH-HHHHHh-----------cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHH
Q 001395 847 -SKWVGESE------KA---VRSL-FAKARA-----------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 904 (1086)
Q Consensus 847 -~~~vGese------~~---ir~l-f~~A~~-----------~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~ 904 (1086)
..|.+... .. ..+. +..++. ..+.||++||+=.++.. ...+..+.|.+.
T Consensus 89 ~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~---------~~~~f~~~L~~~ 159 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR---------DTSRFREALRQY 159 (519)
T ss_pred cccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch---------hHHHHHHHHHHH
Confidence 11111110 01 1111 111111 24679999998754321 124455555555
Q ss_pred HhccccCC-CEEEEEe-c------CCC--------CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC-------
Q 001395 905 LDGLHQRV-NVTVIAA-T------NRP--------DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI------- 961 (1086)
Q Consensus 905 Ld~~~~~~-~v~VI~a-T------N~p--------~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~------- 961 (1086)
+... .. .+++|++ | |.. ..+.+.++...++ ..|.|.+-......+.|+..+...
T Consensus 160 l~~~--~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~ 236 (519)
T PF03215_consen 160 LRSS--RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGK 236 (519)
T ss_pred HHcC--CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 5432 22 5666665 1 111 1456777663344 478898888877777676665433
Q ss_pred CCCC-cc-cHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 962 PCSS-DV-NIRELACLSEGCTGADISLICREAAISAI 996 (1086)
Q Consensus 962 ~l~~-d~-~l~~La~~t~g~sgadl~~l~~~A~~~A~ 996 (1086)
.... .. .++.|+..+.| ||+.+++...+.+.
T Consensus 237 ~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 237 NKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred ccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 1112 12 27788888777 99999998888776
No 441
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.38 E-value=3.4e-06 Score=97.11 Aligned_cols=160 Identities=20% Similarity=0.287 Sum_probs=103.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcc-----------
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG----------- 477 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~----------- 477 (1086)
.+.-+.|++..+..|--....+ .-.++|+-|+.||||||++|+||..|.-.-+.+.|
T Consensus 15 pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 4568899998777654332222 23579999999999999999999887322111121
Q ss_pred --c-------------------ccccccchhhHH-HHHHH-----HH----------HhhcCCCeEEEEccchhhccCCC
Q 001395 478 --P-------------------EVVSQNYGESEQ-ALHEV-----FD----------SASQSAPAVVFIDELDAIAPARK 520 (1086)
Q Consensus 478 --s-------------------~l~s~~~Gese~-~l~~v-----f~----------~a~~~~P~ILfIDEiD~l~~~r~ 520 (1086)
. .++..-.|.++. .+..+ .+ -++++ ..||+|||+..|
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL----- 156 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL----- 156 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc-----
Confidence 0 011112233443 11111 11 01111 249999999777
Q ss_pred CCCchhHHHHHHHHHHHhhcc-----------ccCCCeeEEeccCCCC-CCCccccCCCCcceeeehhhhhhhhhcccCC
Q 001395 521 DGGEELSQRMVATLLNLMDGV-----------CRTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIDMSFLFSLLKNSP 588 (1086)
Q Consensus 521 ~~~~~~~~rv~~~Ll~lLd~l-----------~~~~~viVIatTN~~d-~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~ 588 (1086)
...++..|++.+..- ...-++++|+|+|+.+ .|-|.|+. ||.-.+.+.
T Consensus 157 ------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~------------ 216 (423)
T COG1239 157 ------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTH------------ 216 (423)
T ss_pred ------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeecc------------
Confidence 567888898888652 1224689999999864 56677877 998888873
Q ss_pred CCCCCHHHHHHHHHHHHcc
Q 001395 589 AAVPSPAQRLEILHALLSG 607 (1086)
Q Consensus 589 ~~~Pd~~eR~~IL~~~l~~ 607 (1086)
++.+.++|.+|.+..+.-
T Consensus 217 -~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 217 -YPLDLEERVEIIRRRLAF 234 (423)
T ss_pred -CCCCHHHHHHHHHHHHHh
Confidence 667789999999886653
No 442
>PRK08181 transposase; Validated
Probab=98.38 E-value=4.2e-07 Score=101.18 Aligned_cols=101 Identities=21% Similarity=0.349 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchh-hHHHHHHHHHHhhcCCCeEEEEccchhhccC
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ge-se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
...+++|+||||||||+||.++++++ |..++.++..+++...... .+.....+++... .+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC-
Confidence 45789999999999999999999755 6778888887777653211 1112333444332 456999999986632
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 519 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
. ......|+++++.-... --+|.|||.+
T Consensus 182 -----~---~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 182 -----D---QAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred -----C---HHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 1 22334566666543322 2467777764
No 443
>PRK06526 transposase; Provisional
Probab=98.36 E-value=4.7e-07 Score=100.17 Aligned_cols=101 Identities=17% Similarity=0.341 Sum_probs=62.2
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccc-cHHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGe-se~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
.+.+++|+||||||||++|.+|+.++ |..+..+...+++...... ..+.....+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~-- 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP-- 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC--
Confidence 45679999999999999999998764 6666666666655432111 111222223322 345799999999652
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
......+.|...++..... ..+|++||.+
T Consensus 173 ---------~~~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 173 ---------FEPEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred ---------CCHHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 2334444455555433322 2478888876
No 444
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.9e-06 Score=98.76 Aligned_cols=131 Identities=21% Similarity=0.380 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC-------------------------cEEEEcccccccccch-----hhHHH
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------------------NLFTVNGPEVVSQNYG-----ESEQA 491 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~-------------------------~~i~I~~s~l~s~~~G-----ese~~ 491 (1086)
+.+..+||+||+|+|||++|+.+|+.+.+ .|+.+....-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 45667999999999999999999987632 23344321100 0001 01234
Q ss_pred HHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCC
Q 001395 492 LHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPG 567 (1086)
Q Consensus 492 l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~G 567 (1086)
++++.+.+. .....|++||+++.+ +....+.|++.|+... .++++|.+|+.++.+.+.+++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--
Confidence 555555443 234569999999888 4567788888888863 457788899999999999887
Q ss_pred CcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 568 RLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 568 Rfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
|+ ..+.+ ++|+.++..+.|+.
T Consensus 163 Rc-~~~~~--------------~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVL--------------PAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcC--------------CCCCHHHHHHHHHh
Confidence 65 24444 88988887777754
No 445
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.4e-05 Score=92.49 Aligned_cols=223 Identities=20% Similarity=0.198 Sum_probs=144.2
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH----hC-CcEEEEeCCccc---
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE----AG-LNFLAVKGPELF--- 846 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~----~~-~~fi~v~~sel~--- 846 (1086)
..+.|-+.-+..+++++... +....+..+.+.|-||||||.+..-+-.. .. ...++++|..+-
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45677788888888877643 33456677999999999999998865332 22 245888886531
Q ss_pred -------ccc----ccc-cHHHHHHHHHHH-HhcC-CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCC
Q 001395 847 -------SKW----VGE-SEKAVRSLFAKA-RANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 912 (1086)
Q Consensus 847 -------~~~----vGe-se~~ir~lf~~A-~~~~-p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~ 912 (1086)
+.+ ++. ...+....|..- .+.. +-+|++||+|.|..... .++-.|. ++.. ....
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~----------~vLy~lF-ewp~-lp~s 288 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ----------TVLYTLF-EWPK-LPNS 288 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc----------ceeeeeh-hccc-CCcc
Confidence 111 121 223334444433 3333 66899999999973221 1111221 2222 2456
Q ss_pred CEEEEEecCCCCCCChhhhCC----CCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHcCCCcH--HHH
Q 001395 913 NVTVIAATNRPDKIDPALLRP----GRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV--NIRELACLSEGCTG--ADI 984 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrp----gRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~--~l~~La~~t~g~sg--adl 984 (1086)
++++|+.+|-.|+-|..|.|- +--.+++.|++++.++..+||+..+...+..... .++.+|+...|.+| |.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 788999999988877666541 1224689999999999999999999887766444 37778888888887 334
Q ss_pred HHHHHHHHHHHHHHhcCC--------------CCCCHHHHHHHHHhhC
Q 001395 985 SLICREAAISAIEENLDA--------------SRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 985 ~~l~~~A~~~A~~~~~~~--------------~~It~~d~~~al~~~~ 1018 (1086)
-.+|+.|...+-.+.... +.|.++|...++..+.
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~ 416 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVD 416 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhc
Confidence 455777776665443211 3566888888876654
No 446
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.35 E-value=3.5e-06 Score=102.64 Aligned_cols=78 Identities=24% Similarity=0.215 Sum_probs=49.3
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCccccc----------------------ccc------cc
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSK----------------------WVG------ES 853 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~----------------------~vG------es 853 (1086)
|++....++++|+||+|||+++..++.+ .|.+.+.+...+-... +.. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 5666666999999999999999988654 3566666654321100 000 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCchhhh
Q 001395 854 EKAVRSLFAKARANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 854 e~~ir~lf~~A~~~~p~ILflDEid~L~~ 882 (1086)
+..+..+........+.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22233344445566788999999998753
No 447
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.1e-06 Score=97.22 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=66.1
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHH-HHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~-~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
...+++|+||||||||.||-|||+++ |..++.+..++++......... .....+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~--- 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE--- 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc---
Confidence 56789999999999999999998874 7889999999987654332221 112222221 123349999999864
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
..+....+.++..+...... ... |++||.+..
T Consensus 180 --------~~~~~~~~~~~q~I~~r~~~-~~~-~~tsN~~~~ 211 (254)
T COG1484 180 --------PFSQEEADLLFQLISRRYES-RSL-IITSNLSFG 211 (254)
T ss_pred --------cCCHHHHHHHHHHHHHHHhh-ccc-eeecCCChH
Confidence 12233334444444433322 223 899997744
No 448
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=5.7e-06 Score=95.59 Aligned_cols=194 Identities=24% Similarity=0.272 Sum_probs=126.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEcccccccc--
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVVSQ-- 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-----~~~i~I~~s~l~s~-- 483 (1086)
..+.|-+.+...+++++..+ +..+.+..+.+.|.||||||.+..-+-..+. ...+++||.++...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 57889999999999998776 4455677899999999999998876554432 24588888765322
Q ss_pred --------c----ch-hhHHHHHHHHHH-hhcC-CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-cCCCe
Q 001395 484 --------N----YG-ESEQALHEVFDS-ASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGV 547 (1086)
Q Consensus 484 --------~----~G-ese~~l~~vf~~-a~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-~~~~v 547 (1086)
+ .+ ..+......|+. ..+. .+-|+++||+|.|+... + ..|+.+++.-. ...++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--------~---~vLy~lFewp~lp~sr~ 290 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--------Q---TVLYTLFEWPKLPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--------c---ceeeeehhcccCCccee
Confidence 1 00 111222233332 2222 36799999999997322 1 23444443322 34578
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccc-cchHHHHHHHHHcCC
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHS-LLDSEVEYLSMATHG 626 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~-l~d~~l~~La~~t~G 626 (1086)
++||..|..|.-|..|-|- +.|..+. .+.+.|++|+.++..+||+..+...... .-+..++..|+...|
T Consensus 291 iLiGiANslDlTdR~LprL-~~~~~~~---------P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRL-NLDLTIK---------PKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred eeeeehhhhhHHHHHhhhh-hhccCCC---------CceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 9999999988766544331 2222222 3456669999999999999998876543 234578888888888
Q ss_pred CcHHHHHH
Q 001395 627 FVGADLAA 634 (1086)
Q Consensus 627 fsgaDL~~ 634 (1086)
-+| |++.
T Consensus 361 ~SG-DlRk 367 (529)
T KOG2227|consen 361 PSG-DLRK 367 (529)
T ss_pred Cch-hHHH
Confidence 775 5554
No 449
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.34 E-value=1.1e-06 Score=99.84 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccccccccc-HHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGes-e~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
..+|++|+||+|||||+||.|||+++ |..+..+..++++....... .......++..+ ...+|+|||++.-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e--- 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE--- 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc---
Confidence 45789999999999999999999886 78888888888765432211 112334444443 3459999999853
Q ss_pred cCCCCCCCCccHHHHHHHHHHH-hccccCCCEEEEEecCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVEL-DGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~L-d~~~~~~~v~VI~aTN~p 923 (1086)
..++.....++..+ +.-. ..+...|+|||.+
T Consensus 230 --------~~s~~~~~~ll~~Il~~R~-~~~~~ti~TSNl~ 261 (306)
T PRK08939 230 --------QMSSWVRDEVLGVILQYRM-QEELPTFFTSNFD 261 (306)
T ss_pred --------cccHHHHHHHHHHHHHHHH-HCCCeEEEECCCC
Confidence 12333343454443 3211 1356788999965
No 450
>PRK06526 transposase; Provisional
Probab=98.33 E-value=5.6e-07 Score=99.61 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchh-hHHHHHHHHHHhhcCCCeEEEEccchhhccC
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ge-se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
.+.+++|+||||||||+||.+++.++ |..+..++..+++...... ....+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 46789999999999999999998865 6666666666665442111 011122223322 3457999999987631
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 519 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.......|..+++.-.... .+|++||.+
T Consensus 174 --------~~~~~~~L~~li~~r~~~~--s~IitSn~~ 201 (254)
T PRK06526 174 --------EPEAANLFFQLVSSRYERA--SLIVTSNKP 201 (254)
T ss_pred --------CHHHHHHHHHHHHHHHhcC--CEEEEcCCC
Confidence 1223344555555432222 367777764
No 451
>PRK09183 transposase/IS protein; Provisional
Probab=98.33 E-value=9e-07 Score=98.37 Aligned_cols=104 Identities=19% Similarity=0.335 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchh-hHHHHHHHHHHhhcCCCeEEEEccchhhc
Q 001395 441 LRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIA 516 (1086)
Q Consensus 441 i~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ge-se~~l~~vf~~a~~~~P~ILfIDEiD~l~ 516 (1086)
+..+.+++|+||||||||+|+.+++..+ |..+..++..++...+... ....+..+++.. ...+.+++|||++.+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 4567889999999999999999997654 6677777777766443211 112244555543 2456799999997653
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 517 PARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 517 ~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.. ......|+.+++.....+ .+|.|||.+
T Consensus 178 ~~---------~~~~~~lf~li~~r~~~~--s~iiTsn~~ 206 (259)
T PRK09183 178 FS---------QEEANLFFQVIAKRYEKG--SMILTSNLP 206 (259)
T ss_pred CC---------hHHHHHHHHHHHHHHhcC--cEEEecCCC
Confidence 21 223345666665533333 256677753
No 452
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.32 E-value=3.6e-07 Score=95.87 Aligned_cols=101 Identities=23% Similarity=0.388 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchh-hHHHHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ge-se~~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
..+.+++|+||||||||+||.++++++ |..+..++..+++...... ........++... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~-- 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE-- 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee--
Confidence 357899999999999999999999865 7788888888887542110 0111223344433 3359999998432
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
.........|.++++.-... + ..|.|||.
T Consensus 121 -------~~~~~~~~~l~~ii~~R~~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 121 -------PLSEWEAELLFEIIDERYER-K-PTIITSNL 149 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT---EEEEEESS
T ss_pred -------eecccccccchhhhhHhhcc-c-CeEeeCCC
Confidence 12234455666777664332 3 45668885
No 453
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.32 E-value=2.2e-06 Score=95.02 Aligned_cols=98 Identities=23% Similarity=0.385 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccch-----hhHHHHHHHHHHhhcCCCeEEEEccchh
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG-----ESEQALHEVFDSASQSAPAVVFIDELDA 514 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~G-----ese~~l~~vf~~a~~~~P~ILfIDEiD~ 514 (1086)
.+.+++|+||||||||+||-||++++ |..++.++.++++..... ..+..+. .... ...+|+|||+-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~---~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLL---RELK--KVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHH---HHhh--cCCEEEEecccC
Confidence 67899999999999999999999987 778888888888765322 2222222 2122 345999999854
Q ss_pred hccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 515 IAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 515 l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.- . .......+..++......... |.|+|.+
T Consensus 179 ~~------~---~~~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 179 EP------F---SQEEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred cc------C---CHHHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 41 1 222233444444443323333 7788864
No 454
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.32 E-value=1.2e-05 Score=97.27 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=46.1
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
++++.-..+-+++++..++.. + .+..+.+-+||+|||||||||+++++|+++|..+.+-
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~-~------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEM-F------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHH-h------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 467777788888888887654 1 2334456788899999999999999999999988753
No 455
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.31 E-value=1e-06 Score=88.32 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=70.4
Q ss_pred CcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---cEEEEcccccccccchhhHHH
Q 001395 415 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV---NLFTVNGPEVVSQNYGESEQA 491 (1086)
Q Consensus 415 Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~---~~i~I~~s~l~s~~~Gese~~ 491 (1086)
|....++++++.+... .....+|+|+|++||||+++|+++....+. +|+.++|.++.
T Consensus 2 G~S~~~~~l~~~l~~~----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~---------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP---------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------
T ss_pred CCCHHHHHHHHHHHHH----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------
Confidence 5556666676666544 134567999999999999999999886643 55666665532
Q ss_pred HHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 492 LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 492 l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
.++++.+ ....|||+|+|.+ .......|+..|+... ..++.+|+++..
T Consensus 62 -~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 -AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp -HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred -HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 4456665 3348999999988 4566777777777643 455667776653
No 456
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.30 E-value=1.9e-06 Score=98.70 Aligned_cols=101 Identities=18% Similarity=0.300 Sum_probs=66.6
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccc---cHHHHHHHHHHHHhcCCeEEEEecCchhhh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE---SEKAVRSLFAKARANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGe---se~~ir~lf~~A~~~~p~ILflDEid~L~~ 882 (1086)
..+++|+||+|||||+||.|||+++ +..++.++..+++...... ........+.... ...+|+|||++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e-- 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE-- 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC--
Confidence 3789999999999999999999875 7788889988876543211 1111112233333 3459999999854
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 883 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 883 ~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
.........|...++..... +..+|++||.+
T Consensus 259 ---------~~t~~~~~~Lf~iin~R~~~-~k~tIiTSNl~ 289 (329)
T PRK06835 259 ---------KITEFSKSELFNLINKRLLR-QKKMIISTNLS 289 (329)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 12345556676666654332 34577888864
No 457
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.29 E-value=2e-06 Score=94.49 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccccccccc---HHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 810 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES---EKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGes---e~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
.+++|+|+||||||+||.+||.++ +..++.++.++++....... ......++.... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 479999999999999999999886 77888888888765433221 112233444433 46699999998642
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
.++-....|...++.-. .....+|.+||..
T Consensus 176 ---------~s~~~~~~l~~Ii~~Ry-~~~~~tiitSNl~ 205 (244)
T PRK07952 176 ---------ESRYEKVIINQIVDRRS-SSKRPTGMLTNSN 205 (244)
T ss_pred ---------CCHHHHHHHHHHHHHHH-hCCCCEEEeCCCC
Confidence 11212222333344321 2346788899865
No 458
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.28 E-value=7.3e-06 Score=98.28 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=119.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccc--
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY-- 485 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~-- 485 (1086)
..+.|.......+.+.+... .....+++++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~ 212 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKI----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLES 212 (457)
T ss_pred cceecccHHHhHHHHHHHHH----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHH
Confidence 34666666555554443322 1234679999999999999999998754 56899999987742210
Q ss_pred ---hhhH-------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CCC
Q 001395 486 ---GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDG 546 (1086)
Q Consensus 486 ---Gese-------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~~ 546 (1086)
|... ......|..+ ...+|||||+|.+. ......|+..++.-. . ..+
T Consensus 213 ~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 278 (457)
T PRK11361 213 ELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIKVD 278 (457)
T ss_pred HhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeec
Confidence 1000 0000112222 23489999999883 456677888776421 1 124
Q ss_pred eeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHccC------c-cccchH
Q 001395 547 VLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSGM------E-HSLLDS 615 (1086)
Q Consensus 547 viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~~------~-~~l~d~ 615 (1086)
+.+|++|+..- ..+.+.|+|...++. .+..+.+..|...+|.+ +.+.++... . ..+++.
T Consensus 279 ~rii~~t~~~l---~~~~~~g~~~~~l~~-------~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~ 348 (457)
T PRK11361 279 IRIIAATNRDL---QAMVKEGTFREDLFY-------RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM 348 (457)
T ss_pred eEEEEeCCCCH---HHHHHcCCchHHHHH-------HhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 78888887531 133445677653332 23445557777776653 223333221 1 246777
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 616 EVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 616 ~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
.++.|..+..-.+.+++.+++..|...
T Consensus 349 a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 349 AMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 788888777666788999988887643
No 459
>PRK09183 transposase/IS protein; Provisional
Probab=98.27 E-value=1.2e-06 Score=97.31 Aligned_cols=102 Identities=22% Similarity=0.357 Sum_probs=65.5
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCccccccccc-cHHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~~vGe-se~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
...+++|+||||||||+||.+++.. .|..+..+++.+++..+... ....+..++... ...+.+++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~-- 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP-- 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC--
Confidence 3567999999999999999999765 47777777877765433211 112234445443 2456799999998642
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
......+.|+..++...... .+|+|||.+
T Consensus 178 ---------~~~~~~~~lf~li~~r~~~~--s~iiTsn~~ 206 (259)
T PRK09183 178 ---------FSQEEANLFFQVIAKRYEKG--SMILTSNLP 206 (259)
T ss_pred ---------CChHHHHHHHHHHHHHHhcC--cEEEecCCC
Confidence 23334445666665443332 367888876
No 460
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.27 E-value=4.5e-06 Score=100.55 Aligned_cols=200 Identities=20% Similarity=0.247 Sum_probs=118.8
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccc-
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY- 485 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~- 485 (1086)
+.++.|-......+.+.+... .....++++.|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~ 206 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIE 206 (469)
T ss_pred cccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHH
Confidence 356777777766666655432 1235679999999999999999998875 46899999987732210
Q ss_pred ----hhhH-------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CC
Q 001395 486 ----GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TD 545 (1086)
Q Consensus 486 ----Gese-------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~ 545 (1086)
|... ......|+.+. ...|||||+|.+ .......|+.+++.-. . .-
T Consensus 207 ~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~ 272 (469)
T PRK10923 207 SELFGHEKGAFTGANTIRQGRFEQAD---GGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVKV 272 (469)
T ss_pred HHhcCCCCCCCCCCCcCCCCCeeECC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEEe
Confidence 1000 00001122222 348999999988 3556677888776532 1 12
Q ss_pred CeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHH----HHHHHHcc----Cc---cccch
Q 001395 546 GVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSG----ME---HSLLD 614 (1086)
Q Consensus 546 ~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~----~~---~~l~d 614 (1086)
++.+|++|+..- . .+...|+|...+ ++.+..+.+..|...+|.+ +++.++.. .+ ..+++
T Consensus 273 ~~rii~~~~~~l--~-~~~~~~~~~~~L-------~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 342 (469)
T PRK10923 273 DVRIIAATHQNL--E-QRVQEGKFREDL-------FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHP 342 (469)
T ss_pred eEEEEEeCCCCH--H-HHHHcCCchHHH-------HHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 467888886521 1 111223443221 1222333445566555543 44444332 11 23677
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 615 ~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
..+..|..+..-.+-++|+++++.+...+
T Consensus 343 ~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 343 ETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 78888888877778899999998876543
No 461
>PRK15115 response regulator GlrR; Provisional
Probab=98.25 E-value=6.4e-06 Score=98.48 Aligned_cols=171 Identities=22% Similarity=0.299 Sum_probs=110.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHHh---------------hcCCCe
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSA---------------SQSAPA 505 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a---------------~~~~P~ 505 (1086)
...++|+|++|||||++|+++.... +.+|+.++|..+..... -..+|..+ ......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 4569999999999999999998764 46899999987632211 11122110 111234
Q ss_pred EEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc---------CCCeeEEeccCCCCCCCccccCCCCcceeeehh
Q 001395 506 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR---------TDGVLVIAATNRPDSIEPALRRPGRLDREIEID 576 (1086)
Q Consensus 506 ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~---------~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~ 576 (1086)
.|||||+|.| .......|+..|+.-.- ..++.+|++|+.. +...+ ..|+|...++.
T Consensus 231 tl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~- 295 (444)
T PRK15115 231 TLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYY- 295 (444)
T ss_pred EEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHH-
Confidence 8999999988 35566778877764221 1257888888752 43333 33677554433
Q ss_pred hhhhhhhcccCCCCCCCHHHHHH----HHHHHHcc----Cc---cccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 577 MSFLFSLLKNSPAAVPSPAQRLE----ILHALLSG----ME---HSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 577 l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~----~~---~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
.+..+.+..|...+|.+ +++.++.. .+ ..+++..++.|..+...-+.+++.++++.|..
T Consensus 296 ------~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 296 ------RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred ------hhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 34555667788777753 33444332 11 23678888889888766688899998888764
No 462
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.24 E-value=3.2e-06 Score=90.79 Aligned_cols=162 Identities=23% Similarity=0.330 Sum_probs=90.8
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCC---cEEEEeCCccc-----cc------------------------------cc
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGL---NFLAVKGPELF-----SK------------------------------WV 850 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~---~fi~v~~sel~-----~~------------------------------~v 850 (1086)
...++|+||.|+|||++++.+...... ..+.+...+.. .. ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456999999999999999999887632 11111110000 00 00
Q ss_pred cccHHHHHHHHHHHHhcC-CeEEEEecCchhh-hhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC---
Q 001395 851 GESEKAVRSLFAKARANA-PSIIFFDEIDGLA-AIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK--- 925 (1086)
Q Consensus 851 Gese~~ir~lf~~A~~~~-p~ILflDEid~L~-~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~--- 925 (1086)
......+..+++...... ..||+|||++.+. .. .........|...++......++.+|+++.....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS--------EEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT--------TTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc--------cchHHHHHHHHHHHhhccccCCceEEEECCchHHHHH
Confidence 112344566666655433 4899999999986 21 1235667777777776544555555544433211
Q ss_pred ---CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC-C-CCcccHHHHHHHcCCCcH
Q 001395 926 ---IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP-C-SSDVNIRELACLSEGCTG 981 (1086)
Q Consensus 926 ---lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~-l-~~d~~l~~La~~t~g~sg 981 (1086)
-...+. +|+.. +++++.+.++..++++..+++.. + ..+.+++.+...+.|+++
T Consensus 172 ~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 172 FLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp TT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred hhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 122233 47876 99999999999999999887761 1 256678888999988654
No 463
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.23 E-value=2.5e-06 Score=97.01 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhh-HHHHHHHHHHhhcCCCeEEEEccchhhccC
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGES-EQALHEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ges-e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
..+|++|+||+|||||+|+.++|+++ |..+..+..++++....... ...+...++... ...||+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 46899999999999999999999987 67777777777655432111 111233444433 34699999985431
Q ss_pred CCCCCchhHHHHHHHHHHHh-hccccCCCeeEEeccCCC
Q 001395 519 RKDGGEELSQRMVATLLNLM-DGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lL-d~l~~~~~viVIatTN~~ 556 (1086)
........++..+ +. .-..+...|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~-R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQY-RMQEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHH-HHHCCCeEEEECCCC
Confidence 1223333444433 32 112345577788753
No 464
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.23 E-value=2.8e-06 Score=97.31 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchh---hHHHHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE---SEQALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ge---se~~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
..+++|+||+|||||+||.++|+++ |..++.++..+++...... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC-
Confidence 4789999999999999999999986 7788888888876543210 0111111233333 33699999986542
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
. .......|..+++.....+. .+|.|||.
T Consensus 260 -----~---t~~~~~~Lf~iin~R~~~~k-~tIiTSNl 288 (329)
T PRK06835 260 -----I---TEFSKSELFNLINKRLLRQK-KMIISTNL 288 (329)
T ss_pred -----C---CHHHHHHHHHHHHHHHHCCC-CEEEECCC
Confidence 1 23344667777766443333 45666664
No 465
>PF13173 AAA_14: AAA domain
Probab=98.22 E-value=4.9e-06 Score=82.36 Aligned_cols=70 Identities=29% Similarity=0.432 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhh
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAI 515 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg--~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l 515 (1086)
.+.++|+||.||||||+++.+++.+. .+++.++..+.........+ +.+.+.+.....+.+|||||++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 35689999999999999999998876 77888887765432211111 223333222225679999999877
No 466
>PRK12377 putative replication protein; Provisional
Probab=98.21 E-value=5.1e-06 Score=91.59 Aligned_cols=101 Identities=21% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhh--HHHHHHHHHHhhcCCCeEEEEccchhhccC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGES--EQALHEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ges--e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
..+++|+||||||||+||.++|+.+ |..++.++..+++....... ......+++.. ....+|+|||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 4689999999999999999999987 66777787777765432110 00112344443 345699999996542
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 519 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.++ .....|..+++.-.. ....+|.|||..
T Consensus 177 ----~s~---~~~~~l~~ii~~R~~-~~~ptiitSNl~ 206 (248)
T PRK12377 177 ----ETK---NEQVVLNQIIDRRTA-SMRSVGMLTNLN 206 (248)
T ss_pred ----CCH---HHHHHHHHHHHHHHh-cCCCEEEEcCCC
Confidence 122 234566666665322 234466778753
No 467
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.20 E-value=6.3e-07 Score=94.04 Aligned_cols=101 Identities=22% Similarity=0.400 Sum_probs=63.0
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCccccccccc-cHHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~~vGe-se~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
...+++|+||+|||||+||.+++++ .|..+..++.++++...... ........+.... ...+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~--- 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE--- 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee---
Confidence 4578999999999999999999876 48888999998886553221 1112333444443 3359999999743
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
...+...+.|...++.-..+ ...|.|||..
T Consensus 121 --------~~~~~~~~~l~~ii~~R~~~--~~tIiTSN~~ 150 (178)
T PF01695_consen 121 --------PLSEWEAELLFEIIDERYER--KPTIITSNLS 150 (178)
T ss_dssp -----------HHHHHCTHHHHHHHHHT---EEEEEESS-
T ss_pred --------eecccccccchhhhhHhhcc--cCeEeeCCCc
Confidence 22344556666666654432 3577799865
No 468
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.20 E-value=4.1e-06 Score=92.12 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=63.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchh---hHHHHHHHHHHhhcCCCeEEEEccchhhccC
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE---SEQALHEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ge---se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
.+++|+|+||||||+|+.++|+++ |..++.++..++.....+. .......+++... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 589999999999999999999987 6778888887776543221 1112234455443 45699999997652
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 519 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
..+... ..|..+++.-. ..+..+|.+||.
T Consensus 176 ----~s~~~~---~~l~~Ii~~Ry-~~~~~tiitSNl 204 (244)
T PRK07952 176 ----ESRYEK---VIINQIVDRRS-SSKRPTGMLTNS 204 (244)
T ss_pred ----CCHHHH---HHHHHHHHHHH-hCCCCEEEeCCC
Confidence 222233 34444555421 223456777775
No 469
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=5.2e-06 Score=81.62 Aligned_cols=96 Identities=23% Similarity=0.369 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc--------CCcEEEEcccccccc--------------cc--hhhHHHHHHHHHHh
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS--------GVNLFTVNGPEVVSQ--------------NY--GESEQALHEVFDSA 499 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l--------g~~~i~I~~s~l~s~--------------~~--Gese~~l~~vf~~a 499 (1086)
...++++||||+|||++++.+++.+ ...++.++++...+. .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4668999999999999999999887 677788876554411 00 11233334444444
Q ss_pred hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEecc
Q 001395 500 SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 553 (1086)
Q Consensus 500 ~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatT 553 (1086)
......+|+|||+|.+. .......|..+++ ..++.||.+.
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~----~~~~~vvl~G 123 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN----ESNIKVVLVG 123 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC----SCBEEEEEEE
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh----CCCCeEEEEE
Confidence 44544699999999974 1455566666655 4444444444
No 470
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.19 E-value=1.8e-05 Score=93.00 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=25.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHD 467 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~ 467 (1086)
+.+.+++..-|.||.|+||||+.++++..
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 45667888999999999999999999864
No 471
>PRK06921 hypothetical protein; Provisional
Probab=98.18 E-value=3.3e-06 Score=94.18 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchh-hcc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDA-IAP 517 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~-l~~ 517 (1086)
...+++|+||||||||+|+.++|+++ |..++.++..+++....... ......++.. ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 46789999999999999999999876 56677777666544321111 1112223332 2346999999954 211
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
. ..........|..+++.-...+.. +|.|||.
T Consensus 193 ~-----e~~t~~~~~~lf~iin~R~~~~k~-tIitsn~ 224 (266)
T PRK06921 193 K-----PRATEWQIEQMYSVLNYRYLNHKP-ILISSEL 224 (266)
T ss_pred C-----ccCCHHHHHHHHHHHHHHHHCCCC-EEEECCC
Confidence 1 111122334566666654333333 4556664
No 472
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.18 E-value=4.4e-06 Score=104.80 Aligned_cols=165 Identities=20% Similarity=0.176 Sum_probs=95.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhh-Hhh--------hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-------CcEEE
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKS-TLS--------SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-------VNLFT 474 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~-~~~--------~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-------~~~i~ 474 (1086)
..|.|.+.+|+.|.=.+.-...+. ... ...++..-+|||+|.||||||.+|+++++... ..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 468899988877643332220010 000 02244556899999999999999999997543 23333
Q ss_pred Eccccccc-c--cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc----c----
Q 001395 475 VNGPEVVS-Q--NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----R---- 543 (1086)
Q Consensus 475 I~~s~l~s-~--~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~----~---- 543 (1086)
+++..... . ..|+...... .+..|. ..+++|||++.+ .......|+.+|+.-. .
T Consensus 530 vgLTa~~~~~d~~tG~~~le~G-aLvlAd---gGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 530 VGLTASIKFNESDNGRAMIQPG-AVVLAN---GGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccchhhhcccccCcccccCC-cEEEcC---CCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcc
Confidence 33222211 0 0011100000 111122 249999999988 3456677888886532 1
Q ss_pred ---CCCeeEEeccCCCC-------------CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHH
Q 001395 544 ---TDGVLVIAATNRPD-------------SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALL 605 (1086)
Q Consensus 544 ---~~~viVIatTN~~d-------------~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l 605 (1086)
..++.|||++|+.+ .+++++++ |||-.+.+ ...|+.+.=..|.+..+
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l-------------~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLV-------------LDHIDQDTDQLISLSIA 657 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEe-------------cCCCChHHHHHHHHHHH
Confidence 24689999999853 45688888 99976655 16677665555555544
No 473
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.18 E-value=3e-06 Score=106.55 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=106.7
Q ss_pred hHhhhcCCCCCCeEEEEcCCCChHHHHH-HHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcC--------CC
Q 001395 434 STLSSLGLRPTKGVLLHGPPGTGKTSLA-RLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS--------AP 504 (1086)
Q Consensus 434 ~~~~~lgi~~~~~vLL~GPpGTGKTtLA-ralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~--------~P 504 (1086)
+.|.+..+...++++++||||+|||+|. -++-.++-..++.+|.+.-.. ++..+..+-+..... -|
T Consensus 1484 ~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~P 1558 (3164)
T COG5245 1484 DSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYP 1558 (3164)
T ss_pred HHHHHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEcc
Confidence 4444556677899999999999999974 466677777888887654321 233333332322111 11
Q ss_pred ------eEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc--cc--------cCCCeeEEeccCCCCCCCccccCCCC
Q 001395 505 ------AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG--VC--------RTDGVLVIAATNRPDSIEPALRRPGR 568 (1086)
Q Consensus 505 ------~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~--l~--------~~~~viVIatTN~~d~idpaL~r~GR 568 (1086)
-|||.|||. +|.......+ .++--|..+|+. +- .-.++++.|+||++.+... ..-+.|
T Consensus 1559 K~~vK~lVLFcDeIn--Lp~~~~y~~~---~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eR 1632 (3164)
T COG5245 1559 KPVVKDLVLFCDEIN--LPYGFEYYPP---TVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYER 1632 (3164)
T ss_pred CcchhheEEEeeccC--CccccccCCC---ceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHH
Confidence 299999998 4444333222 222223334433 11 1257899999999876541 111225
Q ss_pred cceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcccc------chHHH-------HHH-------HHHcCCCc
Q 001395 569 LDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSL------LDSEV-------EYL-------SMATHGFV 628 (1086)
Q Consensus 569 fdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l------~d~~l-------~~L-------a~~t~Gfs 628 (1086)
|-|+-.+ ++...|.......|.++++.+.-+-. .+... ... -+...||+
T Consensus 1633 f~r~~v~-----------vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~ 1701 (3164)
T COG5245 1633 FIRKPVF-----------VFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYK 1701 (3164)
T ss_pred HhcCceE-----------EEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC
Confidence 5444333 34478999999999998876532211 11110 011 11126799
Q ss_pred HHHHHHHHHHHH
Q 001395 629 GADLAALCNEAA 640 (1086)
Q Consensus 629 gaDL~~L~~eA~ 640 (1086)
|+|+.++++...
T Consensus 1702 pReLtR~lr~i~ 1713 (3164)
T COG5245 1702 PRELTRSLRAIF 1713 (3164)
T ss_pred hHHHHHHHHHHH
Confidence 999998876543
No 474
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.17 E-value=2.9e-06 Score=89.63 Aligned_cols=106 Identities=25% Similarity=0.405 Sum_probs=68.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc--CCcEEEEcccccccc-cc------------------------------
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS--GVNLFTVNGPEVVSQ-NY------------------------------ 485 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l--g~~~i~I~~s~l~s~-~~------------------------------ 485 (1086)
+.+..+.-+.++||+|+|||||.|++...- ..--+.+++.++... .+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 556788889999999999999999998532 223455555332111 00
Q ss_pred --------hhhHHHHHHH--------------------------HHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHH
Q 001395 486 --------GESEQALHEV--------------------------FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMV 531 (1086)
Q Consensus 486 --------Gese~~l~~v--------------------------f~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~ 531 (1086)
.+.++.-..+ ...|..+.|.|+++||. .+..+++++
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP----------TSALDPElv 172 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP----------TSALDPELV 172 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC----------cccCCHHHH
Confidence 0111111111 22456678999999995 445588999
Q ss_pred HHHHHHhhccccCCCeeEEeccCC
Q 001395 532 ATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 532 ~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
.+.+..|..+...+ .+.|..|+.
T Consensus 173 ~EVL~vm~~LA~eG-mTMivVTHE 195 (240)
T COG1126 173 GEVLDVMKDLAEEG-MTMIIVTHE 195 (240)
T ss_pred HHHHHHHHHHHHcC-CeEEEEech
Confidence 99999999987665 455555554
No 475
>PRK06921 hypothetical protein; Provisional
Probab=98.17 E-value=4.6e-06 Score=93.07 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=61.9
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCch-hhh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDG-LAA 882 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~-L~~ 882 (1086)
...+++|+||||||||+||.|||+++ +..++.+...+++....... ......+... ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 45679999999999999999999874 56777777766654321111 1122222332 3456999999953 111
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 883 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 883 ~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
. . ...+.....|...++..... +..+|++||.+
T Consensus 193 ~---e----~~t~~~~~~lf~iin~R~~~-~k~tIitsn~~ 225 (266)
T PRK06921 193 K---P----RATEWQIEQMYSVLNYRYLN-HKPILISSELT 225 (266)
T ss_pred C---c----cCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 1 0 12333344555555543322 23467788864
No 476
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.16 E-value=3.6e-06 Score=92.48 Aligned_cols=84 Identities=24% Similarity=0.278 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCc-
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRF- 936 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRF- 936 (1086)
+..+++|.+..|.||++||..+.. +-.-+-+++..+..+....+..||+++|++.. |+.-.+++
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~L------------Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~---A~ryad~~i 210 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHL------------DIAHQIEVLELLRDLNREKGLTVVMVLHDLNL---AARYADHLI 210 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCcccc------------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH---HHHhCCEEE
Confidence 666888888999999999998643 44556667777777766678999999987754 54321111
Q ss_pred ----ceEeecCCCCHHHHHHHHHH
Q 001395 937 ----DRLLYVGPPNETDREEIFRI 956 (1086)
Q Consensus 937 ----d~~I~~~~P~~~eR~~Il~~ 956 (1086)
.+++....|..---.+.++.
T Consensus 211 ~lk~G~i~a~G~p~evlT~e~l~~ 234 (258)
T COG1120 211 LLKDGKIVAQGTPEEVLTEENLRE 234 (258)
T ss_pred EEECCeEEeecCcchhcCHHHHHH
Confidence 12455556654333444443
No 477
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.16 E-value=3.1e-06 Score=94.68 Aligned_cols=140 Identities=24% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC-c--EEEEcccccccccchhhHHHHHHHHHHh-----------hcCCCeEEE
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGV-N--LFTVNGPEVVSQNYGESEQALHEVFDSA-----------SQSAPAVVF 508 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~-~--~i~I~~s~l~s~~~Gese~~l~~vf~~a-----------~~~~P~ILf 508 (1086)
..+++||+||+|||||++++.+-..+.- . ...++++.. .+...+..+.+.. ..++..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 4678999999999999999877665533 2 233443321 1223333333321 122346999
Q ss_pred EccchhhccCCCCCCchhHHHHHHHHHHHhhccc-------cCCCeeEEeccCCCC---CCCccccCCCCcceeeehhhh
Q 001395 509 IDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-------RTDGVLVIAATNRPD---SIEPALRRPGRLDREIEIDMS 578 (1086)
Q Consensus 509 IDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-------~~~~viVIatTN~~d---~idpaL~r~GRfdr~I~i~l~ 578 (1086)
|||+..- ..+..+.+...+++.++++.=.-+. .-.++.+|+++++.. .+++.+.| ++.+
T Consensus 106 iDDlN~p--~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r------~f~i--- 174 (272)
T PF12775_consen 106 IDDLNMP--QPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR------HFNI--- 174 (272)
T ss_dssp EETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT------TEEE---
T ss_pred ecccCCC--CCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh------heEE---
Confidence 9999754 3444454444444444443211111 124688999988643 23344443 3322
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHHHHcc
Q 001395 579 FLFSLLKNSPAAVPSPAQRLEILHALLSG 607 (1086)
Q Consensus 579 ~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~ 607 (1086)
+.++.|+.+....|+..++..
T Consensus 175 --------~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 175 --------LNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp --------EE----TCCHHHHHHHHHHHH
T ss_pred --------EEecCCChHHHHHHHHHHHhh
Confidence 444999999999998887754
No 478
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=2.5e-05 Score=87.64 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=84.3
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCcE--------EEEeCCcccccc-cc----ccHHHHHHHHHHHHh----cCC
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLNF--------LAVKGPELFSKW-VG----ESEKAVRSLFAKARA----NAP 869 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f--------i~v~~sel~~~~-vG----ese~~ir~lf~~A~~----~~p 869 (1086)
+.+..+||+||.|+||+++|.++|..+-+.- -.-.-+|+.--. .| -.-..+|++.+.+.. +..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 5567899999999999999999998753210 000112221000 01 124456666655432 344
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCC
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPP 945 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P 945 (1086)
.|++||++|.+ +....|.||+.|+. +..++++|..|+.++.+-|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~m-------------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRM-------------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhc-------------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 69999999966 67889999999995 56689999999999999999998 874 6667654
No 479
>PF13173 AAA_14: AAA domain
Probab=98.13 E-value=9.8e-06 Score=80.21 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhC--CcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 887 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~--~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~ 887 (1086)
+-++|+||.||||||+++.++.... .+++.++..+.......... +.+.+.......+.+||||||+.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 3488999999999999999998876 78888887765321111000 2222222222256799999999651
Q ss_pred CCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChh--hhCCCCcceEeecCCCCHHH
Q 001395 888 SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA--LLRPGRFDRLLYVGPPNETD 949 (1086)
Q Consensus 888 ~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~a--LlrpgRFd~~I~~~~P~~~e 949 (1086)
.....+..+ .|. ..++.||+|+.....+... -.=+||.. .+.+.+.+.+|
T Consensus 75 -----~~~~~lk~l---~d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -----DWEDALKFL---VDN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----cHHHHHHHH---HHh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 112222222 231 1245566655444333221 11236764 66777777665
No 480
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=4.7e-06 Score=90.28 Aligned_cols=74 Identities=28% Similarity=0.431 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccH-HHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhh-----
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-RVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALL----- 931 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~-~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLl----- 931 (1086)
|..+++|....|.||++||.-.=.. ..++ .+++.++... ...+..|++.||+.+. |+.
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALD---------alTR~~lq~~l~~lw----~~~~~TvllVTHdi~E---Av~LsdRi 201 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALD---------ALTREELQDELLRLW----EETRKTVLLVTHDVDE---AVYLADRV 201 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhh---------HHHHHHHHHHHHHHH----HhhCCEEEEEeCCHHH---HHhhhCEE
Confidence 6678888889999999999753111 1122 3333344333 3456889999986544 554
Q ss_pred -----CCCCcceEeecCCCCH
Q 001395 932 -----RPGRFDRLLYVGPPNE 947 (1086)
Q Consensus 932 -----rpgRFd~~I~~~~P~~ 947 (1086)
+|+|.-..+.++.|..
T Consensus 202 vvl~~~P~~i~~~~~i~l~rp 222 (248)
T COG1116 202 VVLSNRPGRIGEELEIDLPRP 222 (248)
T ss_pred EEecCCCcceeeEEecCCCCC
Confidence 5556655666666533
No 481
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.0001 Score=83.59 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=91.6
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCC-------------cEEEEeCCccccccccccHHHHHHHHHHHHh-----cC
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGL-------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA-----NA 868 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------~fi~v~~sel~~~~vGese~~ir~lf~~A~~-----~~ 868 (1086)
+.+...||+|+.|.||+++|+.+++..-+ +++.++.. +.. -.-..++.+.+.+.. +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCC
Confidence 34566899999999999999999887521 22333200 010 123456666665521 35
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHH
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNET 948 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~ 948 (1086)
..|++||++|.+ +....+.||+.|+. +..++++|.+|+.++.+-+.+.+ |+ .++.|.+++.+
T Consensus 91 ~KvvII~~~e~m-------------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 91 KKILIIKNIEKT-------------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred ceEEEEeccccc-------------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 679999999854 56789999999995 45678888888888999999988 76 57899999888
Q ss_pred HHHHHHHH
Q 001395 949 DREEIFRI 956 (1086)
Q Consensus 949 eR~~Il~~ 956 (1086)
+..+.+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 87776654
No 482
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.07 E-value=6.6e-06 Score=98.88 Aligned_cols=137 Identities=24% Similarity=0.262 Sum_probs=83.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEE------ccc
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTV------NGP 478 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~----~~i~I------~~s 478 (1086)
.+.++.|....++.+ + +....+.+++|+||||+|||++++.++..+.- ..+.+ .+.
T Consensus 189 d~~~v~Gq~~~~~al----~----------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGL----E----------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhh----h----------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 567788876544432 1 23346788999999999999999999976521 11111 111
Q ss_pred -----cc-----cccc--------chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc
Q 001395 479 -----EV-----VSQN--------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 540 (1086)
Q Consensus 479 -----~l-----~s~~--------~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~ 540 (1086)
.+ .+.. +|.....-...+..|..+ +|||||++.+ ...++..|++.|+.
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~LE~ 320 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPIES 320 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHHHc
Confidence 00 0000 111100011234444444 9999999765 45777888888854
Q ss_pred cc-----------cCCCeeEEeccCCCC---------------------CCCccccCCCCcceeeeh
Q 001395 541 VC-----------RTDGVLVIAATNRPD---------------------SIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 541 l~-----------~~~~viVIatTN~~d---------------------~idpaL~r~GRfdr~I~i 575 (1086)
-. ...++.+|+|+|... .+..+++. |||-.+.+
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v 385 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEI 385 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEe
Confidence 22 123589999999753 35557777 99988888
No 483
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.07 E-value=6.6e-06 Score=87.00 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 857 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 857 ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
-|-.+++|.++.|.|++|||+.+ ..+.+++.+.|..|..+.. .+.+.|+.||...
T Consensus 143 QRVAIARALaM~P~vmLFDEPTS------------ALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~ 197 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTS------------ALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMG 197 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcc------------cCCHHHHHHHHHHHHHHHH-cCCeEEEEechhH
Confidence 37788999999999999999985 4578899999999987754 4688888898764
No 484
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.07 E-value=1.2e-05 Score=81.31 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=64.4
Q ss_pred cceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc----------------------cccc--cHHHHHHHHHHH
Q 001395 812 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------------WVGE--SEKAVRSLFAKA 864 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~----------------------~vGe--se~~ir~lf~~A 864 (1086)
++|+||||+|||++++.++... +.+++.++....... +... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998775 566766665433210 0011 111122345566
Q ss_pred HhcCCeEEEEecCchhhhhcCCC-CCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 865 RANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 865 ~~~~p~ILflDEid~L~~~r~~~-~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
....|.+|+|||+..+....... ........+.+..|+..+ ...++.+|++++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCc
Confidence 77788999999999886543210 000011122333333332 3457888888876644
No 485
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.06 E-value=1.6e-05 Score=85.29 Aligned_cols=116 Identities=18% Similarity=0.324 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccc-----------------------hhhHHHH
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY-----------------------GESEQAL 492 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~-----------------------Gese~~l 492 (1086)
-|++.+.-++++||||+|||+++..++... +..++.++..++....+ .+....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 478889999999999999999998877543 56777777754211100 0111223
Q ss_pred HHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 493 HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 493 ~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
..+.+.+....+++|+||-+..+.............+.+..++..|..+....++.+|++..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 44444455557899999999988642211111111223333444455554566777777654
No 486
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.05 E-value=2.2e-05 Score=96.22 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=119.1
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhC--CcEEEEeCCcccccccccc--HHHH--------HHHHHHHHhcCCeEEEEecC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGES--EKAV--------RSLFAKARANAPSIIFFDEI 877 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~--~~fi~v~~sel~~~~vGes--e~~i--------r~lf~~A~~~~p~ILflDEi 877 (1086)
.||+|.|+.||+|++++++++..+. .||+.+...--....+|.. +..+ .-++..| ...|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5799999999999999999999874 4887766544333344432 1111 1112222 2349999999
Q ss_pred chhhhhcCCCCCCCCccHHHHHHHHHHHhcccc-----------CCCEEEEEecCCC---CCCChhhhCCCCcceEeecC
Q 001395 878 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-----------RVNVTVIAATNRP---DKIDPALLRPGRFDRLLYVG 943 (1086)
Q Consensus 878 d~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~-----------~~~v~VI~aTN~p---~~lD~aLlrpgRFd~~I~~~ 943 (1086)
.. ..+.+++.|+..|+...- ..+.++|++-|.. ..+.++++. ||+..|.+.
T Consensus 103 n~-------------~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 103 ER-------------LEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred cc-------------CCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 84 478999999999974311 1245666653321 348889998 999999999
Q ss_pred CCCHHHHH-------HHHH--HHHhcCCCCCcccHHHHHHHcC--CC-cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 001395 944 PPNETDRE-------EIFR--IHLRKIPCSSDVNIRELACLSE--GC-TGADISLICREAAISAIEENLDASRITMQHLK 1011 (1086)
Q Consensus 944 ~P~~~eR~-------~Il~--~~l~~~~l~~d~~l~~La~~t~--g~-sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~ 1011 (1086)
.|...+.. +|.. ..+.+..+ .+..++.++..+. |. +.|....+++-|...|..+. ...|+.+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~G--r~~V~~~dv~ 244 (584)
T PRK13406 168 GLALRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAG--RTAVEEEDLA 244 (584)
T ss_pred CCChHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcC--CCCCCHHHHH
Confidence 88765422 2222 22222222 2233444443332 44 55666677777777776665 5679999999
Q ss_pred HHHHhh
Q 001395 1012 TAIRHV 1017 (1086)
Q Consensus 1012 ~al~~~ 1017 (1086)
+++.-+
T Consensus 245 ~Aa~lv 250 (584)
T PRK13406 245 LAARLV 250 (584)
T ss_pred HHHHHH
Confidence 988643
No 487
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=7.8e-06 Score=89.52 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|.++++|....|.+|+|||.-. +++......+...|..+... +..|++.||+...
T Consensus 147 RV~lARAL~~~p~lllLDEP~~------------gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~ 201 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT------------GVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc------------cCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH
Confidence 7788999999999999999873 45566666677777666666 8999999998865
No 488
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=9.2e-05 Score=83.30 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCcE----------------EEEeCCcccccc-ccc--cHHHHHHHHHHHHh-
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLNF----------------LAVKGPELFSKW-VGE--SEKAVRSLFAKARA- 866 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f----------------i~v~~sel~~~~-vGe--se~~ir~lf~~A~~- 866 (1086)
+.+..+||+|| +||+++|+++|..+-+.- ..-+-+|+.--. .|. .-..+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56777999996 689999999987642210 000112221000 011 24566776665532
Q ss_pred ---cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecC
Q 001395 867 ---NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 943 (1086)
Q Consensus 867 ---~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~ 943 (1086)
+...|++||++|.+ +....|.||+.|+. +..++++|.+|+.++.|-|.+.+ |+ +.+.|+
T Consensus 100 p~~~~~kV~II~~ad~m-------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~ 161 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM-------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFP 161 (290)
T ss_pred cccCCcEEEEeehhhhc-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeCC
Confidence 34569999999965 67889999999995 45678999999999999999999 87 577786
Q ss_pred CCCHHHHHHHHH
Q 001395 944 PPNETDREEIFR 955 (1086)
Q Consensus 944 ~P~~~eR~~Il~ 955 (1086)
. +.++..+++.
T Consensus 162 ~-~~~~~~~~L~ 172 (290)
T PRK07276 162 K-NEAYLIQLLE 172 (290)
T ss_pred C-cHHHHHHHHH
Confidence 5 4555445543
No 489
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.04 E-value=1.1e-05 Score=96.21 Aligned_cols=172 Identities=26% Similarity=0.290 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHH---------------hhcCCC
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDS---------------ASQSAP 504 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~---------------a~~~~P 504 (1086)
....++++|.+||||+++|+++.... +.+|+.++|..+..... -..+|.. ......
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 45679999999999999999998654 46899999987642211 1111211 011234
Q ss_pred eEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CCCeeEEeccCCCCCCCccccCCCCcceeeeh
Q 001395 505 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDGVLVIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 505 ~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~~viVIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
.+|||||||.+. ......|+..++.-. . .-++.+|++|+..- .....+|+|.+.+..
T Consensus 235 gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~ 300 (441)
T PRK10365 235 GTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYY 300 (441)
T ss_pred CEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHH
Confidence 589999999883 445567777776422 1 12456787776532 122345677654333
Q ss_pred hhhhhhhhcccCCCCCCCHHHHHH----HHHHHHccC----c---cccchHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 576 DMSFLFSLLKNSPAAVPSPAQRLE----ILHALLSGM----E---HSLLDSEVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 576 ~l~~~~~~~~~v~~~~Pd~~eR~~----IL~~~l~~~----~---~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
.+..+.+..|...+|.+ +++.++... + ..+++..++.|......-+.+++.++++.|+.
T Consensus 301 -------~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 301 -------RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred -------HhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 33445557777666643 444444321 1 23577778888777655577888888877654
No 490
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.03 E-value=2.1e-05 Score=79.51 Aligned_cols=111 Identities=24% Similarity=0.360 Sum_probs=61.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc----------------------cch--hhHHHHHHHHHHh
Q 001395 447 VLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ----------------------NYG--ESEQALHEVFDSA 499 (1086)
Q Consensus 447 vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~----------------------~~G--ese~~l~~vf~~a 499 (1086)
++|+||||+|||++++.++..+ +.+++.++....... ... ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 455665554322210 000 1111122234445
Q ss_pred hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCC
Q 001395 500 SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 558 (1086)
Q Consensus 500 ~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~ 558 (1086)
....|.+++|||+..+..................+..+++.. ...++.+|++++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCc
Confidence 667788999999998864321100001122223333333333 2346777777766543
No 491
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=6.9e-05 Score=84.08 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------EEEEcccccccccchhhHHHHHHHHHHh----hcC
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQS 502 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~----------------~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~ 502 (1086)
-+..+||+||+|+||+++|.++|+.+-+. +..+.. +-.+..+ .-..++.+.+.+ ..+
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~~~~~I--~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QGKGRLH--SIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CCCCCcC--cHHHHHHHHHHHhhCccCC
Confidence 35579999999999999999999876331 222211 0000001 122334443332 234
Q ss_pred CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeeh
Q 001395 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 503 ~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
...|++||++|.+ .....+.|++.|++ ..+++++|..|+.++.+.|.+++ |+. .+.|
T Consensus 95 ~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~ 151 (290)
T PRK05917 95 PYKIYIIHEADRM-----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHI 151 (290)
T ss_pred CceEEEEechhhc-----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEc
Confidence 4569999999988 45677899999988 46788999999999999999998 763 3444
No 492
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.01 E-value=7.6e-06 Score=88.96 Aligned_cols=193 Identities=25% Similarity=0.292 Sum_probs=106.3
Q ss_pred hCCCCCCCcceeCCCCCcchHHHHHHHH------HhCCcEEEEeCCcccc---------ccccccHHHHHHHHHHHHhcC
Q 001395 804 IGTRPPTGILMFGPPGCSKTLMARAVAS------EAGLNFLAVKGPELFS---------KWVGESEKAVRSLFAKARANA 868 (1086)
Q Consensus 804 lg~~~~~gvLL~GPpGTGKTtLAkalA~------~~~~~fi~v~~sel~~---------~~vGese~~ir~lf~~A~~~~ 868 (1086)
..++....+||.||.|.||+.||+-|-. .+..+|+++||..+.+ +..|....+-..--...+...
T Consensus 203 va~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsad 282 (531)
T COG4650 203 VAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSAD 282 (531)
T ss_pred HHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCC
Confidence 3445556699999999999999998843 3678999999977633 233333222222222233445
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--c-------CCCEEEEEecCCCCCCChhhhCCCCcce-
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--Q-------RVNVTVIAATNRPDKIDPALLRPGRFDR- 938 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~-------~~~v~VI~aTN~p~~lD~aLlrpgRFd~- 938 (1086)
..+||+|||..|+. .-+..||+.++... + ..+.-+|+-|.+.-. ...-.|+|..
T Consensus 283 ggmlfldeigelga-------------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlr---q~vaeg~fred 346 (531)
T COG4650 283 GGMLFLDEIGELGA-------------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLR---QLVAEGKFRED 346 (531)
T ss_pred CceEehHhhhhcCc-------------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHH---HHHhccchHHH
Confidence 66999999997732 23456777776321 1 123445555544311 2233455532
Q ss_pred ------EeecCCCCHHHHHHH--------HHHHHhcCCCCCccc----HHHHHHHcC---CCc--HHHHHHHHHHHHHHH
Q 001395 939 ------LLYVGPPNETDREEI--------FRIHLRKIPCSSDVN----IRELACLSE---GCT--GADISLICREAAISA 995 (1086)
Q Consensus 939 ------~I~~~~P~~~eR~~I--------l~~~l~~~~l~~d~~----l~~La~~t~---g~s--gadl~~l~~~A~~~A 995 (1086)
...|.+|...+|.+= +..|.+..+-.-..+ -..|+-.+. .+. -+++.+-+.+.+..|
T Consensus 347 l~arinlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla 426 (531)
T COG4650 347 LYARINLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA 426 (531)
T ss_pred HHHhhheeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh
Confidence 445777877776552 233333322221111 222322221 222 367766666665555
Q ss_pred HHHhcCCCCCCHHHHHHHHHhh
Q 001395 996 IEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 996 ~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
+...|+..-+++.+.++
T Consensus 427 -----d~grit~~~ve~ei~rl 443 (531)
T COG4650 427 -----DSGRITLDVVEDEINRL 443 (531)
T ss_pred -----cCCceeHHHHHHHHHHH
Confidence 45677777777666554
No 493
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.01 E-value=1.7e-05 Score=77.98 Aligned_cols=96 Identities=21% Similarity=0.304 Sum_probs=56.9
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh--------CCcEEEEeCCcccc-------------c-ccc-ccHHHH-HHHHHHH
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA--------GLNFLAVKGPELFS-------------K-WVG-ESEKAV-RSLFAKA 864 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~--------~~~fi~v~~sel~~-------------~-~vG-ese~~i-r~lf~~A 864 (1086)
.+.++++||+|+|||++++.++... ..+++.++++.... . ... .+...+ ..+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3458999999999999999999876 77888888754321 0 011 122333 3333444
Q ss_pred HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec
Q 001395 865 RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920 (1086)
Q Consensus 865 ~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT 920 (1086)
......+|+|||+|.+. ....++.|...++ ..++.||.+.
T Consensus 84 ~~~~~~~lviDe~~~l~------------~~~~l~~l~~l~~----~~~~~vvl~G 123 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF------------SDEFLEFLRSLLN----ESNIKVVLVG 123 (131)
T ss_dssp HHCTEEEEEEETTHHHH------------THHHHHHHHHHTC----SCBEEEEEEE
T ss_pred HhcCCeEEEEeChHhcC------------CHHHHHHHHHHHh----CCCCeEEEEE
Confidence 44444599999999863 2455555554444 3455555444
No 494
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.00 E-value=2.6e-05 Score=93.79 Aligned_cols=198 Identities=21% Similarity=0.235 Sum_probs=115.4
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccc---
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY--- 485 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~--- 485 (1086)
.+.|..+....+.+.+... .....++++.|.+||||+++|+++.... +.+|+.++|..+....+
T Consensus 135 ~lig~s~~~~~v~~~i~~~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~ 204 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESE 204 (463)
T ss_pred ceeecCHHHHHHHHHHHHH----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHH
Confidence 4677777666665555332 1234579999999999999999998764 45899999987733211
Q ss_pred --hhhH-------HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CCCe
Q 001395 486 --GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDGV 547 (1086)
Q Consensus 486 --Gese-------~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~~v 547 (1086)
|... ......|+.+ ....||||||+.+ .......|+.+|+.-. . ..++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 205 LFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred hcCCCCCCCCCcccCCCCcEEEC---CCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 1000 0000112222 2458999999988 3455677777776421 1 1246
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHH----HHHHHHHHHccC----c---cccchHH
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQ----RLEILHALLSGM----E---HSLLDSE 616 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~e----R~~IL~~~l~~~----~---~~l~d~~ 616 (1086)
.+|++|+..- . .+...|+|...+. +.+..+.+..|...+ ...+++.++... + ..+++..
T Consensus 271 rii~~~~~~l--~-~~~~~~~f~~~L~-------~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 340 (463)
T TIGR01818 271 RIVAATHQNL--E-ALVRQGKFREDLF-------HRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEA 340 (463)
T ss_pred EEEEeCCCCH--H-HHHHcCCcHHHHH-------HHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 7888886531 1 2233345543211 122233335555443 344444443321 1 2467788
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 617 VEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 617 l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+..|..+..--+-++|.++++.|...+
T Consensus 341 ~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 341 LERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 888887765557789999998887544
No 495
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.00 E-value=5.4e-05 Score=100.82 Aligned_cols=177 Identities=19% Similarity=0.252 Sum_probs=101.9
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcE---EEEeCC---
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF---LAVKGP--- 843 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f---i~v~~s--- 843 (1086)
+...+++++|.+...+++.+.+.. .....+-+.|+|++|+||||+|+++++.....| +.+...
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 344678899999998888877642 223344588999999999999999987764332 112110
Q ss_pred ---ccccc-----cc---cccHHHHH-------------HHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHH
Q 001395 844 ---ELFSK-----WV---GESEKAVR-------------SLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 899 (1086)
Q Consensus 844 ---el~~~-----~v---Gese~~ir-------------~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~ 899 (1086)
+.... +. .-..+.+. ..++......+.+|+||+++. ...+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~---------------~~~l~ 312 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD---------------QDVLD 312 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC---------------HHHHH
Confidence 00000 00 00000001 112222345677999999873 22333
Q ss_pred HHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCccc----HHHHHHH
Q 001395 900 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN----IRELACL 975 (1086)
Q Consensus 900 ~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~----l~~La~~ 975 (1086)
.+....+.. ..+..||+||++.+ +++....++++.++.|+.++..++|..+.-+..... .+ ..++++.
T Consensus 313 ~L~~~~~~~--~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~ 384 (1153)
T PLN03210 313 ALAGQTQWF--GSGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALR 384 (1153)
T ss_pred HHHhhCccC--CCCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 333322211 23567888887543 333334678899999999999999988764322211 12 3345666
Q ss_pred cCCCc
Q 001395 976 SEGCT 980 (1086)
Q Consensus 976 t~g~s 980 (1086)
+.|.+
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 66655
No 496
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.97 E-value=0.00017 Score=85.03 Aligned_cols=206 Identities=16% Similarity=0.216 Sum_probs=101.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc-ccccccc------
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN-GPEVVSQ------ 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~-~s~l~s~------ 483 (1086)
+++.=..+-++++++.+. . +-....++ ..+-+||+||+||||||.++.+++++|..+++-. +-.+...
T Consensus 82 eeLAVHkkKI~eVk~WL~-~-~~~~~~~l---~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~ 156 (634)
T KOG1970|consen 82 EELAVHKKKISEVKQWLK-Q-VAEFTPKL---GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNE 156 (634)
T ss_pred HHHhhhHHhHHHHHHHHH-H-HHHhccCC---CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccccccc
Confidence 444444555566666655 1 11111112 2456788899999999999999999999886543 2111110
Q ss_pred ------cchhhHHHHHHHHHHhh------------cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCC
Q 001395 484 ------NYGESEQALHEVFDSAS------------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTD 545 (1086)
Q Consensus 484 ------~~Gese~~l~~vf~~a~------------~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~ 545 (1086)
++...-.........+. ...|.+|+|||+-..+.. + ..+....++.++-......
T Consensus 157 t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d-~~~~f~evL~~y~s~g~~P 229 (634)
T KOG1970|consen 157 TSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------D-DSETFREVLRLYVSIGRCP 229 (634)
T ss_pred chhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------h-hHHHHHHHHHHHHhcCCCc
Confidence 11110111111222221 124669999998555421 1 2233333333332222222
Q ss_pred CeeEEecc-CCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccc------hHHHH
Q 001395 546 GVLVIAAT-NRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLL------DSEVE 618 (1086)
Q Consensus 546 ~viVIatT-N~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~------d~~l~ 618 (1086)
+++|.|- +..+.-++.. +|...+.. ..-..++.|.+-...-....|+..++....... ...++
T Consensus 230 -lIf~iTd~~~~g~nnq~r----lf~~d~q~-----~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 230 -LIFIITDSLSNGNNNQDR----LFPKDIQE-----EPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -EEEEEeccccCCCcchhh----hchhhhhh-----ccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 3333332 2333333222 22222221 112334445666777777777777765544333 45566
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 619 YLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 619 ~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
.++....| ||+..+....+.
T Consensus 300 ~i~~~s~G----DIRsAInsLQls 319 (634)
T KOG1970|consen 300 LICQGSGG----DIRSAINSLQLS 319 (634)
T ss_pred HHHHhcCc----cHHHHHhHhhhh
Confidence 66665554 777655544433
No 497
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.97 E-value=0.00013 Score=90.33 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=40.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~ 470 (1086)
..++++.|+++.++.|..++... ++++|+||||||||++|+++++.++.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--------------~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--------------RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--------------CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 45678999999999887766432 37999999999999999999988753
No 498
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.0002 Score=84.03 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=67.5
Q ss_pred HHHHhhCC--CCCCCcceeCCCCCcchHHHHHHHHHhC--CcEEEEeCC-------------------c--c-ccccccc
Q 001395 799 EAFKRIGT--RPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGP-------------------E--L-FSKWVGE 852 (1086)
Q Consensus 799 ~~~~~lg~--~~~~gvLL~GPpGTGKTtLAkalA~~~~--~~fi~v~~s-------------------e--l-~~~~vGe 852 (1086)
.++..+|. ....-+...|++|.||+|+-+.+..+.. ..++.+... . + ...+.|.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 34444443 3344589999999999999999986542 111111110 0 0 0112222
Q ss_pred cH---------------------------HHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHH
Q 001395 853 SE---------------------------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 905 (1086)
Q Consensus 853 se---------------------------~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~L 905 (1086)
.+ +..|.+|+.+.-..|-+|+|||... ..+...+..|...|
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN------------hLD~dsl~AL~~Al 525 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN------------HLDRDSLGALAKAL 525 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc------------cccHHHHHHHHHHH
Confidence 22 3447888888889999999999874 33556677777777
Q ss_pred hccccCCCEEEEEecCCCCCC
Q 001395 906 DGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 906 d~~~~~~~v~VI~aTN~p~~l 926 (1086)
.... ++ ||+.||+.+.+
T Consensus 526 ~~F~--GG--Vv~VSHd~~fi 542 (582)
T KOG0062|consen 526 KNFN--GG--VVLVSHDEEFI 542 (582)
T ss_pred HhcC--Cc--EEEEECcHHHH
Confidence 6542 23 55566655443
No 499
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00014 Score=80.14 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=83.4
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCc--------------EEEEeCCcccccc-c--cccHHHHHHHHHHHH----
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLN--------------FLAVKGPELFSKW-V--GESEKAVRSLFAKAR---- 865 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~--------------fi~v~~sel~~~~-v--Gese~~ir~lf~~A~---- 865 (1086)
.++..+||+||.|+||..+|.++|...-+. +-.-.-+|+.--+ . .-....+|++.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 457789999999999999999998764211 0001112221100 0 112344555555432
Q ss_pred -hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCC
Q 001395 866 -ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 944 (1086)
Q Consensus 866 -~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~ 944 (1086)
.+...|++||++|.+ .....|.||+.|+. +..++++|..|+.++.+-|.+++ |+. .+.|+.
T Consensus 85 e~~~~KV~II~~ae~m-------------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~ 146 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-------------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLS 146 (261)
T ss_pred hcCCCEEEEeccHhhh-------------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCC
Confidence 133579999999966 67889999999994 56789999999999999999999 874 456666
Q ss_pred C
Q 001395 945 P 945 (1086)
Q Consensus 945 P 945 (1086)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 500
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.97 E-value=1.6e-05 Score=83.41 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=67.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEcccccccccchhhH--------------------------
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNYGESE-------------------------- 489 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s~l~s~~~Gese-------------------------- 489 (1086)
++.+.++..+.|.||+|+|||||+++++..+.. --+.+++.++.........
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 356778999999999999999999999986521 1244555433210000000
Q ss_pred ---HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC
Q 001395 490 ---QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559 (1086)
Q Consensus 490 ---~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i 559 (1086)
++-+-.+..+....|.++++||.-. ..+......+.+.|..+....+..+|.+|+.++.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~----------~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTS----------HLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0111122344556789999999532 23445556666666665444345677788776654
Done!