Query 001395
Match_columns 1086
No_of_seqs 802 out of 5671
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 01:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.3E-95 4E-100 904.0 31.6 601 307-1035 134-765 (806)
2 1ypw_A Transitional endoplasmi 100.0 4.8E-70 1.6E-74 686.0 19.8 600 307-1034 134-764 (806)
3 4b4t_J 26S protease regulatory 100.0 3.7E-51 1.2E-55 470.4 25.0 262 757-1020 130-392 (405)
4 4b4t_I 26S protease regulatory 100.0 1.5E-48 5.2E-53 449.5 24.3 253 766-1020 173-426 (437)
5 4b4t_H 26S protease regulatory 100.0 1.4E-47 4.9E-52 445.2 28.5 251 767-1019 201-452 (467)
6 4b4t_L 26S protease subunit RP 100.0 6.7E-48 2.3E-52 449.8 25.0 260 759-1020 165-425 (437)
7 4b4t_M 26S protease regulatory 100.0 1E-47 3.6E-52 447.8 24.6 254 765-1020 171-425 (434)
8 4b4t_K 26S protease regulatory 100.0 2.2E-46 7.4E-51 436.5 28.8 250 766-1017 163-414 (428)
9 4b4t_J 26S protease regulatory 100.0 1.6E-43 5.3E-48 407.1 28.5 261 369-646 108-372 (405)
10 4b4t_I 26S protease regulatory 100.0 1.5E-42 5.1E-47 399.6 31.5 227 405-646 176-406 (437)
11 4b4t_L 26S protease subunit RP 100.0 1.1E-41 3.6E-46 397.6 28.3 227 405-646 175-405 (437)
12 4b4t_M 26S protease regulatory 100.0 8E-42 2.7E-46 398.3 26.5 227 405-646 175-405 (434)
13 4b4t_H 26S protease regulatory 100.0 1.3E-41 4.6E-46 395.2 27.4 260 370-646 170-433 (467)
14 4b4t_K 26S protease regulatory 100.0 9.7E-41 3.3E-45 388.9 26.6 231 405-650 166-401 (428)
15 3cf2_A TER ATPase, transitiona 100.0 8.4E-42 2.9E-46 423.4 16.5 275 768-1044 197-501 (806)
16 3cf0_A Transitional endoplasmi 100.0 9.3E-40 3.2E-44 366.8 23.8 271 762-1032 2-300 (301)
17 2x8a_A Nuclear valosin-contain 100.0 5.1E-38 1.7E-42 348.3 23.7 253 768-1022 3-269 (274)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.7E-38 3E-42 354.2 25.3 261 767-1032 4-318 (322)
19 3hu3_A Transitional endoplasmi 100.0 2.6E-36 9E-41 359.4 31.1 348 308-783 135-485 (489)
20 3eie_A Vacuolar protein sortin 100.0 4.9E-37 1.7E-41 347.8 22.0 265 765-1034 8-319 (322)
21 2qp9_X Vacuolar protein sortin 100.0 2.9E-36 9.9E-41 346.2 23.5 265 764-1033 40-351 (355)
22 1r6b_X CLPA protein; AAA+, N-t 100.0 2.2E-34 7.4E-39 361.7 37.5 441 408-998 183-718 (758)
23 3pxi_A Negative regulator of g 100.0 5.2E-34 1.8E-38 358.1 31.6 481 408-999 177-728 (758)
24 2ce7_A Cell division protein F 100.0 2.3E-34 7.8E-39 340.4 26.2 248 769-1019 10-258 (476)
25 2zan_A Vacuolar protein sortin 100.0 3E-35 1E-39 347.4 17.4 263 765-1032 124-440 (444)
26 1lv7_A FTSH; alpha/beta domain 100.0 2.8E-33 9.4E-38 306.1 26.6 248 768-1018 5-253 (257)
27 3h4m_A Proteasome-activating n 100.0 1.9E-33 6.6E-38 311.4 25.5 249 768-1018 10-259 (285)
28 3hu3_A Transitional endoplasmi 100.0 1.3E-33 4.5E-38 336.2 22.1 249 770-1020 199-462 (489)
29 1qvr_A CLPB protein; coiled co 100.0 1.6E-32 5.4E-37 348.7 32.8 512 408-999 167-823 (854)
30 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-32 5.6E-37 311.0 27.1 225 408-649 9-236 (322)
31 2x8a_A Nuclear valosin-contain 100.0 4.9E-33 1.7E-37 308.3 21.5 226 408-647 7-237 (274)
32 3b9p_A CG5977-PA, isoform A; A 100.0 1.1E-32 3.7E-37 307.4 22.0 267 763-1034 9-293 (297)
33 3d8b_A Fidgetin-like protein 1 100.0 1.7E-32 5.8E-37 315.1 23.6 264 764-1032 73-353 (357)
34 2qz4_A Paraplegin; AAA+, SPG7, 100.0 9.4E-33 3.2E-37 301.3 17.3 248 770-1020 1-252 (262)
35 3eie_A Vacuolar protein sortin 100.0 7.7E-32 2.6E-36 305.2 24.3 227 407-650 14-242 (322)
36 2dhr_A FTSH; AAA+ protein, hex 100.0 1.9E-32 6.6E-37 325.7 19.1 248 770-1020 26-274 (499)
37 1ixz_A ATP-dependent metallopr 100.0 1.1E-31 3.7E-36 293.0 23.0 247 765-1014 6-253 (254)
38 3vfd_A Spastin; ATPase, microt 100.0 1.6E-31 5.6E-36 310.2 23.7 271 757-1032 97-384 (389)
39 2qp9_X Vacuolar protein sortin 100.0 6.4E-31 2.2E-35 301.8 25.6 226 407-649 47-274 (355)
40 3cf0_A Transitional endoplasmi 100.0 4.4E-31 1.5E-35 296.3 20.0 227 407-648 11-241 (301)
41 2r62_A Cell division protease 100.0 1.1E-32 3.8E-37 302.8 6.1 251 768-1021 4-257 (268)
42 1iy2_A ATP-dependent metallopr 100.0 5.9E-30 2E-34 283.5 24.1 244 768-1014 33-277 (278)
43 2zan_A Vacuolar protein sortin 100.0 4.4E-30 1.5E-34 303.3 22.9 226 407-649 130-358 (444)
44 2ce7_A Cell division protein F 100.0 7E-30 2.4E-34 302.1 24.6 225 408-647 13-240 (476)
45 1lv7_A FTSH; alpha/beta domain 100.0 6.4E-29 2.2E-33 271.5 24.9 226 408-648 9-237 (257)
46 3h4m_A Proteasome-activating n 100.0 1.5E-28 5E-33 272.2 25.0 224 408-646 14-241 (285)
47 2c9o_A RUVB-like 1; hexameric 100.0 1.6E-29 5.5E-34 299.6 15.9 362 408-1019 34-439 (456)
48 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.3E-28 4.6E-33 268.4 21.7 225 409-647 4-233 (262)
49 3d8b_A Fidgetin-like protein 1 100.0 3.9E-28 1.3E-32 278.8 22.7 224 407-647 80-306 (357)
50 3b9p_A CG5977-PA, isoform A; A 100.0 3.8E-28 1.3E-32 270.7 21.3 223 408-647 18-244 (297)
51 2dhr_A FTSH; AAA+ protein, hex 100.0 6.3E-28 2.1E-32 287.0 21.7 224 408-646 28-254 (499)
52 1ixz_A ATP-dependent metallopr 100.0 3E-27 1E-31 257.9 24.1 225 407-646 12-239 (254)
53 1ypw_A Transitional endoplasmi 100.0 9.7E-28 3.3E-32 301.9 21.6 250 769-1020 198-462 (806)
54 3vfd_A Spastin; ATPase, microt 99.9 6.1E-27 2.1E-31 271.8 23.9 223 408-647 112-337 (389)
55 1iy2_A ATP-dependent metallopr 99.9 5.8E-26 2E-30 251.4 24.0 225 407-646 36-263 (278)
56 2r62_A Cell division protease 99.9 1.4E-27 4.8E-32 262.2 2.5 222 408-644 8-234 (268)
57 3t15_A Ribulose bisphosphate c 99.9 7.1E-26 2.4E-30 253.2 9.8 176 805-986 32-222 (293)
58 1g41_A Heat shock protein HSLU 99.9 1.3E-23 4.5E-28 245.4 23.1 170 411-603 15-190 (444)
59 3t15_A Ribulose bisphosphate c 99.9 7.9E-25 2.7E-29 244.7 11.3 178 436-634 28-222 (293)
60 3cmw_A Protein RECA, recombina 99.9 1.7E-23 5.9E-28 274.8 6.5 153 770-923 1015-1218(1706)
61 2c9o_A RUVB-like 1; hexameric 99.9 3E-24 1E-28 254.4 -2.7 204 769-990 31-262 (456)
62 3syl_A Protein CBBX; photosynt 99.9 3.6E-21 1.2E-25 215.1 17.3 226 774-1011 30-280 (309)
63 3syl_A Protein CBBX; photosynt 99.8 1.5E-20 5E-25 210.2 18.7 218 409-649 28-268 (309)
64 3pfi_A Holliday junction ATP-d 99.8 3.6E-19 1.2E-23 201.8 23.7 216 770-1019 24-256 (338)
65 3uk6_A RUVB-like 2; hexameric 99.8 2.9E-19 9.8E-24 204.6 20.8 221 770-1018 39-331 (368)
66 1hqc_A RUVB; extended AAA-ATPa 99.8 1.8E-19 6.1E-24 202.6 18.6 262 770-1069 7-291 (324)
67 3m6a_A ATP-dependent protease 99.8 8.5E-20 2.9E-24 220.5 8.1 225 771-1016 77-340 (543)
68 1ofh_A ATP-dependent HSL prote 99.8 8.2E-19 2.8E-23 195.3 15.3 240 775-1017 15-299 (310)
69 3pvs_A Replication-associated 99.8 2.2E-18 7.7E-23 203.2 17.9 244 770-1054 21-284 (447)
70 1d2n_A N-ethylmaleimide-sensit 99.8 2E-18 6.8E-23 190.1 14.8 228 775-1020 33-267 (272)
71 3hws_A ATP-dependent CLP prote 99.8 2.4E-18 8.1E-23 197.6 14.5 236 776-1013 16-345 (363)
72 1g41_A Heat shock protein HSLU 99.8 2E-19 7E-24 210.1 5.0 170 774-954 14-188 (444)
73 3uk6_A RUVB-like 2; hexameric 99.7 2.5E-17 8.4E-22 188.6 17.8 203 409-648 42-315 (368)
74 3m6a_A ATP-dependent protease 99.7 8.4E-18 2.9E-22 203.1 13.3 203 411-644 81-316 (543)
75 1ojl_A Transcriptional regulat 99.7 1.5E-18 5.1E-23 194.9 5.4 256 775-1065 2-304 (304)
76 1ofh_A ATP-dependent HSL prote 99.7 7.7E-17 2.6E-21 179.3 18.5 216 411-644 15-274 (310)
77 1d2n_A N-ethylmaleimide-sensit 99.7 8.2E-17 2.8E-21 177.1 17.6 206 411-639 33-245 (272)
78 3hws_A ATP-dependent CLP prote 99.7 7.8E-17 2.7E-21 185.0 18.1 220 412-647 16-326 (363)
79 2chg_A Replication factor C sm 99.7 5.3E-16 1.8E-20 162.5 22.8 202 769-1015 11-224 (226)
80 3pfi_A Holliday junction ATP-d 99.7 2.2E-16 7.4E-21 178.9 21.2 193 409-644 27-235 (338)
81 4akg_A Glutathione S-transfera 99.7 3E-16 1E-20 214.8 24.3 442 443-964 1266-1795(2695)
82 2z4s_A Chromosomal replication 99.7 1.3E-16 4.5E-21 188.0 17.2 220 770-1018 100-333 (440)
83 1g8p_A Magnesium-chelatase 38 99.7 4.3E-16 1.5E-20 176.7 19.7 230 754-1018 5-323 (350)
84 1l8q_A Chromosomal replication 99.7 3.9E-16 1.3E-20 176.1 18.6 218 770-1016 6-239 (324)
85 3u61_B DNA polymerase accessor 99.7 2.4E-16 8.2E-21 177.6 16.6 201 770-1015 21-235 (324)
86 1um8_A ATP-dependent CLP prote 99.7 3E-16 1E-20 180.8 17.5 238 775-1014 21-362 (376)
87 2v1u_A Cell division control p 99.7 1.2E-15 4.2E-20 174.4 22.4 224 772-1017 16-276 (387)
88 1njg_A DNA polymerase III subu 99.7 1.6E-15 5.4E-20 160.6 20.3 202 770-1014 18-248 (250)
89 3bos_A Putative DNA replicatio 99.7 1.2E-15 4E-20 162.8 19.3 205 771-1015 24-241 (242)
90 1hqc_A RUVB; extended AAA-ATPa 99.7 1.2E-15 4E-20 171.4 20.2 190 409-640 10-215 (324)
91 1um8_A ATP-dependent CLP prote 99.7 9E-16 3.1E-20 176.9 18.9 234 411-647 21-343 (376)
92 1sxj_A Activator 1 95 kDa subu 99.7 5.2E-16 1.8E-20 186.6 15.4 225 769-1017 33-274 (516)
93 3pxg_A Negative regulator of g 99.6 4.7E-16 1.6E-20 184.7 14.6 206 771-1017 176-406 (468)
94 4fcw_A Chaperone protein CLPB; 99.6 6.9E-16 2.4E-20 172.2 14.7 205 774-999 16-282 (311)
95 1r6b_X CLPA protein; AAA+, N-t 99.6 2.1E-15 7.3E-20 189.3 19.2 223 772-1018 183-434 (758)
96 3cmw_A Protein RECA, recombina 99.6 9.6E-15 3.3E-19 192.5 25.8 150 406-556 1015-1218(1706)
97 2qby_B CDC6 homolog 3, cell di 99.6 4.8E-15 1.6E-19 170.1 19.9 213 775-1018 20-271 (384)
98 2r44_A Uncharacterized protein 99.6 2.1E-15 7.1E-20 170.5 16.7 209 773-1018 25-298 (331)
99 1sxj_D Activator 1 41 kDa subu 99.6 7.2E-15 2.5E-19 166.7 20.9 211 769-1018 31-264 (353)
100 3pxg_A Negative regulator of g 99.6 9.1E-16 3.1E-20 182.2 14.0 186 408-644 177-386 (468)
101 1in4_A RUVB, holliday junction 99.6 3.1E-14 1.1E-18 161.7 25.3 214 771-1018 21-251 (334)
102 4fcw_A Chaperone protein CLPB; 99.6 3.2E-15 1.1E-19 166.9 16.3 206 411-648 17-283 (311)
103 1jbk_A CLPB protein; beta barr 99.6 4.1E-16 1.4E-20 159.5 8.2 159 771-954 18-194 (195)
104 1jbk_A CLPB protein; beta barr 99.6 8.5E-16 2.9E-20 157.1 10.3 158 408-601 19-194 (195)
105 2chg_A Replication factor C sm 99.6 1.4E-14 4.9E-19 151.5 19.6 188 408-640 14-208 (226)
106 3te6_A Regulatory protein SIR3 99.6 2.5E-15 8.6E-20 169.0 14.1 201 411-648 20-291 (318)
107 1l8q_A Chromosomal replication 99.6 7.6E-15 2.6E-19 165.5 17.6 195 409-642 9-214 (324)
108 1fnn_A CDC6P, cell division co 99.6 4.4E-14 1.5E-18 162.0 24.0 222 772-1020 14-277 (389)
109 2chq_A Replication factor C sm 99.6 5.4E-15 1.9E-19 164.9 15.6 208 769-1017 11-226 (319)
110 3pvs_A Replication-associated 99.6 9.4E-15 3.2E-19 172.3 17.8 184 408-643 23-222 (447)
111 1njg_A DNA polymerase III subu 99.6 1.6E-14 5.5E-19 152.8 17.4 185 408-640 20-232 (250)
112 2v1u_A Cell division control p 99.6 1.8E-14 6.2E-19 164.7 19.2 204 411-645 19-258 (387)
113 2qby_A CDC6 homolog 1, cell di 99.6 2.3E-14 7.9E-19 163.6 19.9 224 771-1018 16-273 (386)
114 1sxj_B Activator 1 37 kDa subu 99.6 3E-14 1E-18 159.2 20.1 204 769-1017 15-231 (323)
115 2z4s_A Chromosomal replication 99.6 9.1E-15 3.1E-19 172.3 16.5 175 444-644 130-314 (440)
116 1jr3_A DNA polymerase III subu 99.6 2.9E-14 1E-18 162.9 19.4 203 770-1015 11-242 (373)
117 3pxi_A Negative regulator of g 99.6 1.5E-14 5.3E-19 181.5 18.0 199 411-647 491-728 (758)
118 1iqp_A RFCS; clamp loader, ext 99.6 4.4E-14 1.5E-18 158.1 19.9 204 769-1017 19-234 (327)
119 3te6_A Regulatory protein SIR3 99.6 1.9E-14 6.4E-19 161.9 16.2 176 806-998 42-289 (318)
120 3u61_B DNA polymerase accessor 99.6 2.2E-14 7.7E-19 161.5 16.7 173 408-627 23-208 (324)
121 1qvr_A CLPB protein; coiled co 99.6 9.7E-15 3.3E-19 185.6 14.8 202 771-997 166-394 (854)
122 1sxj_A Activator 1 95 kDa subu 99.5 1.9E-14 6.6E-19 172.9 15.1 191 408-626 36-243 (516)
123 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.8E-14 6E-19 171.7 13.6 209 775-1018 22-286 (500)
124 2qby_B CDC6 homolog 3, cell di 99.5 8.3E-14 2.8E-18 159.7 18.7 195 411-643 20-252 (384)
125 3bos_A Putative DNA replicatio 99.5 6.9E-14 2.4E-18 149.0 16.8 189 409-645 26-226 (242)
126 1sxj_E Activator 1 40 kDa subu 99.5 1.2E-13 4.1E-18 157.1 19.4 190 769-994 8-243 (354)
127 2r44_A Uncharacterized protein 99.5 1.7E-13 5.8E-18 154.8 18.8 191 410-646 26-280 (331)
128 2p65_A Hypothetical protein PF 99.5 9.5E-15 3.2E-19 149.2 7.6 152 771-946 18-187 (187)
129 2p65_A Hypothetical protein PF 99.5 9.7E-15 3.3E-19 149.1 7.5 147 408-575 19-183 (187)
130 2bjv_A PSP operon transcriptio 99.5 5.9E-14 2E-18 153.6 13.7 194 772-995 3-240 (265)
131 1in4_A RUVB, holliday junction 99.5 4.9E-13 1.7E-17 151.8 21.5 195 408-645 22-232 (334)
132 2chq_A Replication factor C sm 99.5 1E-13 3.4E-18 154.6 14.2 187 408-639 14-207 (319)
133 1sxj_D Activator 1 41 kDa subu 99.5 1.3E-13 4.4E-18 156.3 15.0 190 408-642 34-241 (353)
134 1jr3_A DNA polymerase III subu 99.5 3.1E-13 1.1E-17 154.3 18.3 184 409-640 14-225 (373)
135 1iqp_A RFCS; clamp loader, ext 99.5 3.8E-13 1.3E-17 150.4 18.2 187 408-639 22-215 (327)
136 3cmu_A Protein RECA, recombina 99.5 1.9E-14 6.4E-19 191.4 8.4 169 754-922 657-868 (2050)
137 1g8p_A Magnesium-chelatase 38 99.5 2.2E-13 7.4E-18 154.4 16.0 201 408-647 21-306 (350)
138 1sxj_C Activator 1 40 kDa subu 99.5 3.1E-13 1.1E-17 153.5 17.0 208 770-1017 20-239 (340)
139 1sxj_B Activator 1 37 kDa subu 99.5 3.7E-13 1.3E-17 150.2 16.9 183 408-639 18-212 (323)
140 3vkg_A Dynein heavy chain, cyt 99.5 7.8E-12 2.7E-16 172.3 32.4 360 443-878 1303-1714(3245)
141 2qby_A CDC6 homolog 1, cell di 99.5 3.9E-13 1.3E-17 153.4 16.3 201 411-644 20-253 (386)
142 1fnn_A CDC6P, cell division co 99.5 1.2E-12 4.1E-17 150.0 19.4 200 411-645 17-256 (389)
143 1sxj_E Activator 1 40 kDa subu 99.5 6.5E-13 2.2E-17 151.0 16.6 186 408-640 11-241 (354)
144 4akg_A Glutathione S-transfera 99.4 5.3E-12 1.8E-16 173.3 26.1 128 444-602 645-790 (2695)
145 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 8.6E-13 2.9E-17 157.2 15.2 198 411-650 22-273 (500)
146 3cmu_A Protein RECA, recombina 99.4 3.5E-12 1.2E-16 170.0 21.8 115 805-919 1423-1560(2050)
147 2bjv_A PSP operon transcriptio 99.4 1E-12 3.5E-17 143.7 14.1 195 409-643 4-240 (265)
148 3f9v_A Minichromosome maintena 99.4 8.5E-14 2.9E-18 169.7 5.3 220 775-1017 295-587 (595)
149 3n70_A Transport activator; si 99.4 1.9E-13 6.3E-18 136.4 5.9 112 776-923 2-116 (145)
150 3k1j_A LON protease, ATP-depen 99.4 2.7E-12 9.4E-17 157.0 14.6 217 768-1016 34-374 (604)
151 1sxj_C Activator 1 40 kDa subu 99.3 7.8E-12 2.7E-16 142.0 16.6 175 408-626 22-203 (340)
152 1a5t_A Delta prime, HOLB; zinc 99.3 1.3E-11 4.4E-16 140.2 18.0 158 807-990 22-207 (334)
153 3co5_A Putative two-component 99.3 1.4E-13 5E-18 136.9 1.7 112 776-923 5-116 (143)
154 1ojl_A Transcriptional regulat 99.3 3E-12 1E-16 143.6 12.2 197 411-642 2-234 (304)
155 1w5s_A Origin recognition comp 99.3 9.4E-11 3.2E-15 135.5 19.7 226 773-1018 20-294 (412)
156 3n70_A Transport activator; si 99.3 9.7E-12 3.3E-16 123.9 9.9 112 412-556 2-116 (145)
157 3co5_A Putative two-component 99.2 4.1E-12 1.4E-16 126.4 5.7 112 412-556 5-116 (143)
158 2gno_A DNA polymerase III, gam 99.2 5E-11 1.7E-15 133.7 15.0 142 779-958 1-152 (305)
159 3f9v_A Minichromosome maintena 99.2 2.5E-12 8.7E-17 156.8 4.2 205 411-647 295-571 (595)
160 1a5t_A Delta prime, HOLB; zinc 99.2 1.1E-10 3.7E-15 132.6 17.2 170 416-635 7-204 (334)
161 1ny5_A Transcriptional regulat 99.2 1.1E-11 3.7E-16 143.7 8.3 205 775-1014 137-384 (387)
162 1w5s_A Origin recognition comp 99.1 3.8E-10 1.3E-14 130.3 16.0 206 411-645 22-275 (412)
163 3vkg_A Dynein heavy chain, cyt 99.1 8.9E-09 3E-13 142.6 29.5 123 445-602 605-750 (3245)
164 2krk_A 26S protease regulatory 99.1 9.8E-11 3.3E-15 106.6 6.7 78 941-1020 7-84 (86)
165 3kw6_A 26S protease regulatory 99.1 2.2E-10 7.5E-15 102.2 8.3 75 943-1019 1-75 (78)
166 2gno_A DNA polymerase III, gam 99.1 3.7E-10 1.3E-14 126.6 11.4 142 415-605 1-152 (305)
167 3vlf_B 26S protease regulatory 99.1 3.6E-10 1.2E-14 103.3 8.7 73 946-1020 2-74 (88)
168 3dzd_A Transcriptional regulat 99.0 3.4E-10 1.2E-14 130.2 8.1 190 776-995 130-361 (368)
169 3k1j_A LON protease, ATP-depen 99.0 8.6E-10 2.9E-14 134.9 10.7 120 503-646 201-358 (604)
170 3ec2_A DNA replication protein 99.0 4.8E-10 1.6E-14 115.2 6.8 132 770-925 5-145 (180)
171 3aji_B S6C, proteasome (prosom 98.9 8.9E-10 3E-14 99.4 6.5 75 946-1022 2-76 (83)
172 3ec2_A DNA replication protein 98.8 4.1E-09 1.4E-13 108.2 6.6 108 438-557 32-144 (180)
173 1ny5_A Transcriptional regulat 98.8 1.3E-08 4.6E-13 117.7 10.1 197 411-642 137-369 (387)
174 2kjq_A DNAA-related protein; s 98.8 5.8E-09 2E-13 104.6 5.9 105 443-575 35-145 (149)
175 3j16_B RLI1P; ribosome recycli 98.7 1.8E-08 6E-13 122.9 10.6 56 858-925 475-530 (608)
176 2qen_A Walker-type ATPase; unk 98.7 3.8E-07 1.3E-11 102.4 19.9 186 411-636 12-246 (350)
177 2kjq_A DNAA-related protein; s 98.7 2.3E-08 7.9E-13 100.2 8.6 102 808-939 35-142 (149)
178 2dzn_B 26S protease regulatory 98.7 5E-09 1.7E-13 94.4 2.6 69 948-1018 1-69 (82)
179 2vhj_A Ntpase P4, P4; non- hyd 98.7 8.9E-09 3.1E-13 115.2 5.1 121 806-930 120-242 (331)
180 1tf7_A KAIC; homohexamer, hexa 98.7 3.8E-07 1.3E-11 109.7 19.3 116 439-560 33-189 (525)
181 2w58_A DNAI, primosome compone 98.7 8.2E-09 2.8E-13 107.7 4.2 70 809-880 54-127 (202)
182 3f8t_A Predicted ATPase involv 98.7 8.2E-08 2.8E-12 112.0 12.7 210 777-1017 215-483 (506)
183 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.2E-08 4E-13 114.2 4.6 122 439-563 118-242 (331)
184 1svm_A Large T antigen; AAA+ f 98.6 2.5E-08 8.5E-13 114.8 5.3 144 779-944 130-284 (377)
185 2krk_A 26S protease regulatory 98.6 6.6E-08 2.3E-12 87.9 6.3 56 590-646 9-64 (86)
186 3dzd_A Transcriptional regulat 98.6 2.9E-07 9.8E-12 105.9 13.2 196 411-641 129-359 (368)
187 2fna_A Conserved hypothetical 98.6 5.4E-07 1.9E-11 101.2 15.0 181 411-636 13-250 (357)
188 2qen_A Walker-type ATPase; unk 98.5 2.4E-06 8.1E-11 95.8 20.1 190 771-989 8-247 (350)
189 2fna_A Conserved hypothetical 98.5 6.2E-07 2.1E-11 100.7 15.2 187 771-990 9-252 (357)
190 2w58_A DNAI, primosome compone 98.5 3.8E-08 1.3E-12 102.6 4.4 70 444-515 54-127 (202)
191 2qgz_A Helicase loader, putati 98.5 4.2E-08 1.4E-12 110.1 3.4 70 809-880 152-226 (308)
192 3ux8_A Excinuclease ABC, A sub 98.5 2.9E-07 9.9E-12 114.0 10.5 65 858-942 551-618 (670)
193 1svm_A Large T antigen; AAA+ f 98.5 3E-07 1E-11 105.8 9.6 118 439-575 164-282 (377)
194 3vlf_B 26S protease regulatory 98.4 4.4E-07 1.5E-11 82.8 7.4 53 593-646 2-54 (88)
195 2r2a_A Uncharacterized protein 98.4 4.1E-07 1.4E-11 95.6 7.2 122 445-575 6-150 (199)
196 3kw6_A 26S protease regulatory 98.4 3.7E-07 1.3E-11 81.2 5.8 59 590-649 1-59 (78)
197 2r2a_A Uncharacterized protein 98.4 2.8E-07 9.4E-12 97.0 5.6 127 811-948 7-156 (199)
198 3f8t_A Predicted ATPase involv 98.3 1.2E-06 4E-11 102.4 11.0 204 410-652 212-472 (506)
199 1ye8_A Protein THEP1, hypothet 98.3 2.5E-06 8.6E-11 88.0 11.0 122 812-949 3-167 (178)
200 2qgz_A Helicase loader, putati 98.3 3.1E-07 1.1E-11 103.0 3.7 71 443-515 151-226 (308)
201 3aji_B S6C, proteasome (prosom 98.2 8.8E-07 3E-11 79.7 5.1 52 593-645 2-53 (83)
202 1tue_A Replication protein E1; 98.2 1.1E-06 3.8E-11 92.2 6.2 93 440-556 54-157 (212)
203 1tue_A Replication protein E1; 98.1 1.5E-06 5.1E-11 91.2 5.6 110 806-944 55-178 (212)
204 1jr3_D DNA polymerase III, del 98.1 4.3E-05 1.5E-09 86.4 16.0 177 808-1017 17-209 (343)
205 1n0w_A DNA repair protein RAD5 98.0 1E-05 3.5E-10 86.2 8.8 118 440-557 20-175 (243)
206 1ye8_A Protein THEP1, hypothet 98.0 3E-05 1E-09 79.9 10.8 27 446-472 2-28 (178)
207 2cvh_A DNA repair and recombin 97.9 3E-05 1E-09 81.2 11.0 117 805-925 16-158 (220)
208 2cvh_A DNA repair and recombin 97.9 2.8E-05 9.7E-10 81.3 9.8 40 440-479 16-55 (220)
209 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.6E-05 5.5E-10 83.7 7.8 109 440-556 19-168 (235)
210 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.7E-05 5.8E-10 83.5 7.9 108 806-923 20-168 (235)
211 4a74_A DNA repair and recombin 97.9 1.8E-05 6.1E-10 83.5 7.9 119 440-558 21-182 (231)
212 2ehv_A Hypothetical protein PH 97.8 3E-05 1E-09 82.8 9.0 128 440-575 26-205 (251)
213 2ehv_A Hypothetical protein PH 97.8 4.1E-05 1.4E-09 81.7 10.0 129 805-943 26-206 (251)
214 4a74_A DNA repair and recombin 97.8 1.5E-05 5.3E-10 83.9 6.1 121 805-925 21-182 (231)
215 1u0j_A DNA replication protein 97.8 3.8E-05 1.3E-09 84.0 9.2 27 809-835 104-130 (267)
216 4g1u_C Hemin import ATP-bindin 97.8 1.7E-05 5.8E-10 87.0 6.0 56 858-925 149-210 (266)
217 1n0w_A DNA repair protein RAD5 97.8 2.4E-05 8.2E-10 83.2 7.0 120 805-926 20-177 (243)
218 3gfo_A Cobalt import ATP-bindi 97.8 5.3E-06 1.8E-10 91.5 1.7 31 438-468 28-58 (275)
219 3hr8_A Protein RECA; alpha and 97.8 8.7E-05 3E-09 84.6 11.5 116 439-554 56-196 (356)
220 1jr3_D DNA polymerase III, del 97.8 0.00013 4.4E-09 82.4 12.7 154 443-638 17-187 (343)
221 1u0j_A DNA replication protein 97.8 3.3E-05 1.1E-09 84.4 7.4 29 442-470 102-130 (267)
222 2zr9_A Protein RECA, recombina 97.7 4.2E-05 1.4E-09 87.2 8.2 79 439-517 56-153 (349)
223 3gfo_A Cobalt import ATP-bindi 97.7 1.4E-05 4.9E-10 88.1 3.6 57 858-926 151-207 (275)
224 1xp8_A RECA protein, recombina 97.7 0.00011 3.9E-09 84.1 10.8 115 440-554 70-209 (366)
225 3tif_A Uncharacterized ABC tra 97.7 5.1E-05 1.7E-09 81.6 6.9 55 858-924 153-207 (235)
226 2z43_A DNA repair and recombin 97.6 6.9E-05 2.4E-09 84.4 8.0 115 440-554 103-256 (324)
227 1pzn_A RAD51, DNA repair and r 97.6 7.3E-05 2.5E-09 85.2 8.2 119 439-557 126-287 (349)
228 3fvq_A Fe(3+) IONS import ATP- 97.6 4.3E-05 1.5E-09 87.1 6.2 56 858-925 146-201 (359)
229 4g1u_C Hemin import ATP-bindin 97.6 1.5E-05 5.2E-10 87.4 2.3 111 438-558 31-210 (266)
230 2jv2_A Putative uncharacterize 97.6 0.00012 4.1E-09 65.6 7.7 51 305-377 30-80 (83)
231 3tui_C Methionine import ATP-b 97.6 5.8E-05 2E-09 86.2 6.9 56 858-925 171-226 (366)
232 4gp7_A Metallophosphoesterase; 97.6 6.5E-05 2.2E-09 76.5 6.5 63 496-559 94-162 (171)
233 1v5w_A DMC1, meiotic recombina 97.6 9.4E-05 3.2E-09 84.0 8.5 117 439-555 117-273 (343)
234 3fvq_A Fe(3+) IONS import ATP- 97.6 0.00011 3.8E-09 83.8 9.0 31 438-468 24-54 (359)
235 3lda_A DNA repair protein RAD5 97.6 9.8E-05 3.4E-09 85.6 8.7 116 440-555 174-327 (400)
236 3rlf_A Maltose/maltodextrin im 97.6 6.5E-05 2.2E-09 86.3 6.9 56 858-925 141-196 (381)
237 3rlf_A Maltose/maltodextrin im 97.6 8.4E-05 2.9E-09 85.4 7.7 111 438-558 23-196 (381)
238 4gp7_A Metallophosphoesterase; 97.6 5E-05 1.7E-09 77.3 5.1 68 857-925 90-161 (171)
239 3hr8_A Protein RECA; alpha and 97.6 0.00015 5.3E-09 82.6 9.5 116 806-921 58-196 (356)
240 3tui_C Methionine import ATP-b 97.6 0.00013 4.4E-09 83.4 8.8 111 438-558 48-226 (366)
241 2zr9_A Protein RECA, recombina 97.5 7.1E-05 2.4E-09 85.3 6.6 120 805-924 57-199 (349)
242 2ixe_A Antigen peptide transpo 97.5 3.5E-05 1.2E-09 84.7 3.8 31 438-468 39-69 (271)
243 2ixe_A Antigen peptide transpo 97.5 0.00012 4E-09 80.6 8.0 66 858-942 164-229 (271)
244 1pzn_A RAD51, DNA repair and r 97.5 0.00012 4.3E-09 83.3 8.4 120 805-926 127-289 (349)
245 3tif_A Uncharacterized ABC tra 97.5 6.4E-05 2.2E-09 80.9 5.6 31 438-468 25-55 (235)
246 2pcj_A ABC transporter, lipopr 97.5 0.00012 4.1E-09 78.1 7.6 30 439-468 25-54 (224)
247 2pcj_A ABC transporter, lipopr 97.5 3.7E-05 1.3E-09 82.1 3.6 65 858-942 148-212 (224)
248 1g6h_A High-affinity branched- 97.5 0.0002 6.9E-09 78.0 9.5 30 439-468 28-57 (257)
249 1g6h_A High-affinity branched- 97.5 0.0001 3.4E-09 80.4 7.0 56 858-926 161-216 (257)
250 2dzn_B 26S protease regulatory 97.5 1.2E-05 4E-10 72.2 -0.4 54 595-649 1-54 (82)
251 3jvv_A Twitching mobility prot 97.5 0.00014 4.6E-09 83.2 8.2 96 811-926 125-234 (356)
252 1u94_A RECA protein, recombina 97.5 0.00013 4.6E-09 83.2 8.1 115 440-554 59-198 (356)
253 2olj_A Amino acid ABC transpor 97.5 0.00011 3.7E-09 80.5 7.0 55 858-925 167-221 (263)
254 2eyu_A Twitching motility prot 97.5 0.00019 6.5E-09 78.4 8.6 99 805-924 21-134 (261)
255 1xp8_A RECA protein, recombina 97.5 0.00017 5.7E-09 82.7 8.5 117 805-921 70-209 (366)
256 2ff7_A Alpha-hemolysin translo 97.5 4.7E-05 1.6E-09 82.6 3.6 31 438-468 29-59 (247)
257 3nh6_A ATP-binding cassette SU 97.5 1.8E-05 6.1E-10 88.5 0.2 31 438-468 74-104 (306)
258 3nh6_A ATP-binding cassette SU 97.5 7E-05 2.4E-09 83.8 4.8 54 858-925 198-251 (306)
259 1z47_A CYSA, putative ABC-tran 97.5 0.00016 5.4E-09 82.5 7.8 31 438-468 35-65 (355)
260 2it1_A 362AA long hypothetical 97.4 0.00013 4.4E-09 83.4 7.0 56 858-925 141-196 (362)
261 1vpl_A ABC transporter, ATP-bi 97.4 0.00016 5.4E-09 78.8 7.3 31 438-468 35-65 (256)
262 1z47_A CYSA, putative ABC-tran 97.4 8.3E-05 2.9E-09 84.8 5.3 56 858-925 153-208 (355)
263 2it1_A 362AA long hypothetical 97.4 0.00017 6E-09 82.4 7.9 31 438-468 23-53 (362)
264 2yyz_A Sugar ABC transporter, 97.4 0.00014 4.9E-09 83.0 7.1 56 858-925 141-196 (359)
265 1v43_A Sugar-binding transport 97.4 0.00019 6.6E-09 82.3 8.3 31 438-468 31-61 (372)
266 1g29_1 MALK, maltose transport 97.4 0.00016 5.5E-09 83.0 7.6 31 438-468 23-53 (372)
267 1v43_A Sugar-binding transport 97.4 0.0001 3.4E-09 84.7 5.7 56 858-925 149-204 (372)
268 3lda_A DNA repair protein RAD5 97.4 0.00011 3.7E-09 85.2 6.0 117 805-923 174-328 (400)
269 2z43_A DNA repair and recombin 97.4 0.00012 4.1E-09 82.4 6.2 115 805-921 103-256 (324)
270 1vpl_A ABC transporter, ATP-bi 97.4 0.0001 3.5E-09 80.3 5.3 55 858-925 154-208 (256)
271 2yyz_A Sugar ABC transporter, 97.4 0.00018 6.3E-09 82.1 7.5 31 438-468 23-53 (359)
272 1cz4_A VCP-like ATPase; double 97.4 0.0012 4E-08 68.4 12.7 157 63-378 10-174 (185)
273 3d31_A Sulfate/molybdate ABC t 97.4 0.0001 3.6E-09 83.8 5.2 56 858-925 135-190 (348)
274 1g29_1 MALK, maltose transport 97.4 0.00013 4.3E-09 83.8 5.9 56 858-925 147-202 (372)
275 2olj_A Amino acid ABC transpor 97.4 7.2E-05 2.5E-09 81.9 3.7 31 438-468 44-74 (263)
276 1z6t_A APAF-1, apoptotic prote 97.4 0.001 3.4E-08 80.6 14.2 171 773-981 122-322 (591)
277 2onk_A Molybdate/tungstate ABC 97.4 6.1E-05 2.1E-09 81.3 3.0 56 858-925 134-189 (240)
278 1nlf_A Regulatory protein REPA 97.4 0.0003 1E-08 77.1 8.6 29 440-468 26-54 (279)
279 1v5w_A DMC1, meiotic recombina 97.4 0.00022 7.6E-09 80.9 7.7 117 805-923 118-274 (343)
280 3d31_A Sulfate/molybdate ABC t 97.4 0.00026 9E-09 80.5 8.2 111 438-558 20-190 (348)
281 1u94_A RECA protein, recombina 97.4 0.00022 7.5E-09 81.4 7.4 118 805-922 59-199 (356)
282 3io5_A Recombination and repai 97.3 0.00052 1.8E-08 76.6 9.9 115 439-554 24-170 (333)
283 2ihy_A ABC transporter, ATP-bi 97.3 0.00026 8.9E-09 78.1 7.5 31 438-468 41-71 (279)
284 1oxx_K GLCV, glucose, ABC tran 97.3 0.00015 5E-09 82.8 5.6 31 438-468 25-55 (353)
285 2ff7_A Alpha-hemolysin translo 97.3 0.00012 4.1E-09 79.3 4.7 54 858-925 153-206 (247)
286 1sgw_A Putative ABC transporte 97.3 6.1E-05 2.1E-09 79.9 2.3 26 808-833 34-59 (214)
287 2qi9_C Vitamin B12 import ATP- 97.3 0.00014 4.7E-09 79.0 4.9 55 858-925 134-195 (249)
288 1z6t_A APAF-1, apoptotic prote 97.3 0.0027 9.3E-08 76.8 16.7 168 411-628 124-321 (591)
289 2dr3_A UPF0273 protein PH0284; 97.3 0.0007 2.4E-08 71.9 10.2 39 439-477 18-59 (247)
290 2ghi_A Transport protein; mult 97.3 0.0001 3.4E-09 80.6 3.5 31 438-468 40-70 (260)
291 2onk_A Molybdate/tungstate ABC 97.3 0.00024 8.2E-09 76.7 6.4 30 438-468 19-48 (240)
292 3gd7_A Fusion complex of cysti 97.3 7.5E-05 2.6E-09 86.2 2.6 31 438-468 41-71 (390)
293 2a5y_B CED-4; apoptosis; HET: 97.3 0.0023 7.9E-08 77.1 15.5 166 414-627 131-329 (549)
294 1oxx_K GLCV, glucose, ABC tran 97.3 6.9E-05 2.4E-09 85.5 2.0 56 858-925 148-203 (353)
295 2ihy_A ABC transporter, ATP-bi 97.3 0.00013 4.4E-09 80.6 4.0 56 858-926 169-226 (279)
296 1b0u_A Histidine permease; ABC 97.3 0.00017 5.8E-09 78.9 4.8 55 858-925 161-215 (262)
297 1cr0_A DNA primase/helicase; R 97.3 0.00061 2.1E-08 75.2 9.3 38 439-476 30-71 (296)
298 2yz2_A Putative ABC transporte 97.2 0.00049 1.7E-08 75.3 8.4 56 858-926 146-201 (266)
299 1ji0_A ABC transporter; ATP bi 97.2 0.00017 5.9E-09 77.7 4.5 55 858-925 147-201 (240)
300 2ghi_A Transport protein; mult 97.2 0.0002 6.8E-09 78.2 5.0 64 858-942 163-226 (260)
301 2nq2_C Hypothetical ABC transp 97.2 0.00054 1.9E-08 74.4 8.4 30 439-468 26-55 (253)
302 2zu0_C Probable ATP-dependent 97.2 0.00087 3E-08 73.4 10.1 30 438-467 40-69 (267)
303 1nlf_A Regulatory protein REPA 97.2 0.00034 1.2E-08 76.7 6.8 111 806-925 27-183 (279)
304 1qhx_A CPT, protein (chloramph 97.2 0.00051 1.7E-08 69.5 7.6 34 444-477 3-36 (178)
305 2i1q_A DNA repair and recombin 97.2 0.00035 1.2E-08 78.3 6.8 114 440-553 94-256 (322)
306 3jvv_A Twitching mobility prot 97.2 0.00053 1.8E-08 78.3 8.3 99 443-559 122-234 (356)
307 3sfz_A APAF-1, apoptotic pepti 97.2 0.0043 1.5E-07 81.2 18.1 168 410-628 123-321 (1249)
308 2yz2_A Putative ABC transporte 97.2 0.00091 3.1E-08 73.2 9.9 31 438-468 27-57 (266)
309 2nq2_C Hypothetical ABC transp 97.2 0.00055 1.9E-08 74.4 8.1 56 858-925 136-191 (253)
310 1b0u_A Histidine permease; ABC 97.2 0.00054 1.8E-08 74.8 7.9 31 438-468 26-56 (262)
311 3sfz_A APAF-1, apoptotic pepti 97.2 0.0027 9.2E-08 83.1 15.8 170 773-981 122-322 (1249)
312 2cbz_A Multidrug resistance-as 97.2 0.0012 4.1E-08 70.9 10.2 31 438-468 25-55 (237)
313 3vaa_A Shikimate kinase, SK; s 97.2 0.00022 7.7E-09 74.0 4.3 38 439-476 20-57 (199)
314 2zu0_C Probable ATP-dependent 97.2 0.00058 2E-08 74.8 7.7 55 858-925 172-226 (267)
315 3io5_A Recombination and repai 97.1 0.00086 2.9E-08 74.9 9.0 116 805-921 25-170 (333)
316 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00054 1.8E-08 74.3 7.3 53 860-925 153-205 (250)
317 2cbz_A Multidrug resistance-as 97.1 0.00094 3.2E-08 71.8 9.0 54 858-925 135-191 (237)
318 1ji0_A ABC transporter; ATP bi 97.1 0.00013 4.6E-09 78.6 2.3 30 439-468 27-56 (240)
319 3ozx_A RNAse L inhibitor; ATP 97.1 0.00083 2.8E-08 80.8 9.1 57 857-925 392-448 (538)
320 2pjz_A Hypothetical protein ST 97.1 0.0011 3.7E-08 72.5 9.3 30 438-468 25-54 (263)
321 2qi9_C Vitamin B12 import ATP- 97.1 0.00013 4.5E-09 79.1 2.0 31 438-468 20-50 (249)
322 3b5x_A Lipid A export ATP-bind 97.1 0.0005 1.7E-08 83.6 7.0 64 858-942 488-551 (582)
323 1sgw_A Putative ABC transporte 97.1 0.00051 1.7E-08 72.8 6.2 30 439-468 30-59 (214)
324 3qf4_B Uncharacterized ABC tra 97.1 0.00017 5.8E-09 88.0 2.7 32 438-469 375-406 (598)
325 1cr0_A DNA primase/helicase; R 97.1 0.00097 3.3E-08 73.6 8.5 113 805-923 31-197 (296)
326 2ewv_A Twitching motility prot 97.1 0.0011 3.7E-08 76.2 9.1 73 806-878 133-219 (372)
327 2r6a_A DNAB helicase, replicat 97.0 0.0011 3.8E-08 78.1 9.3 39 439-477 198-240 (454)
328 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00051 1.8E-08 77.6 6.1 96 809-924 171-276 (330)
329 3qf4_A ABC transporter, ATP-bi 97.0 0.0006 2E-08 83.0 7.0 64 858-942 487-550 (587)
330 3qf4_A ABC transporter, ATP-bi 97.0 0.00017 6E-09 87.7 2.2 32 438-469 363-394 (587)
331 2pjz_A Hypothetical protein ST 97.0 0.0011 3.8E-08 72.4 8.3 52 858-925 136-187 (263)
332 3qf4_B Uncharacterized ABC tra 97.0 0.00068 2.3E-08 82.7 7.3 64 858-942 499-562 (598)
333 3gd7_A Fusion complex of cysti 97.0 0.00035 1.2E-08 80.6 4.5 53 858-924 163-215 (390)
334 3b5x_A Lipid A export ATP-bind 97.0 0.00031 1.1E-08 85.4 4.2 31 438-468 363-393 (582)
335 3thx_B DNA mismatch repair pro 97.0 0.00097 3.3E-08 84.7 8.8 108 809-927 673-800 (918)
336 4a82_A Cystic fibrosis transme 97.0 0.00019 6.5E-09 87.2 2.3 32 438-469 361-392 (578)
337 3dm5_A SRP54, signal recogniti 97.0 0.0023 8E-08 74.8 11.3 196 809-1019 100-342 (443)
338 2i1q_A DNA repair and recombin 97.0 0.00061 2.1E-08 76.3 5.9 115 805-921 94-257 (322)
339 2orw_A Thymidine kinase; TMTK, 97.0 0.00027 9.3E-09 73.0 2.7 32 444-475 3-37 (184)
340 3trf_A Shikimate kinase, SK; a 97.0 0.00044 1.5E-08 70.5 4.2 33 444-476 5-37 (185)
341 3b60_A Lipid A export ATP-bind 97.0 0.00028 9.7E-09 85.7 3.2 31 438-468 363-393 (582)
342 2orw_A Thymidine kinase; TMTK, 96.9 0.00017 5.8E-09 74.6 0.9 30 812-841 6-38 (184)
343 2rhm_A Putative kinase; P-loop 96.9 0.00049 1.7E-08 70.3 4.2 34 441-474 2-35 (193)
344 2dr3_A UPF0273 protein PH0284; 96.9 0.0012 4E-08 70.1 7.3 39 805-843 19-60 (247)
345 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00039 1.3E-08 78.6 3.4 72 442-513 169-250 (330)
346 2p5t_B PEZT; postsegregational 96.9 0.0019 6.6E-08 69.8 8.6 40 441-480 29-68 (253)
347 1zp6_A Hypothetical protein AT 96.9 0.00054 1.8E-08 70.1 4.0 41 440-480 5-45 (191)
348 1qhx_A CPT, protein (chloramph 96.9 0.00093 3.2E-08 67.5 5.6 33 810-842 4-36 (178)
349 2d2e_A SUFC protein; ABC-ATPas 96.8 0.0026 8.8E-08 68.9 9.4 29 439-467 24-52 (250)
350 2b8t_A Thymidine kinase; deoxy 96.8 0.0035 1.2E-07 66.7 10.0 72 443-515 11-101 (223)
351 2a5y_B CED-4; apoptosis; HET: 96.8 0.0094 3.2E-07 71.7 15.0 166 778-980 131-330 (549)
352 1mv5_A LMRA, multidrug resista 96.8 0.0003 1E-08 75.9 1.7 25 808-832 27-51 (243)
353 3ozx_A RNAse L inhibitor; ATP 96.8 0.0024 8.2E-08 76.8 9.5 54 858-925 146-199 (538)
354 2i3b_A HCR-ntpase, human cance 96.8 0.0018 6.3E-08 67.1 7.4 23 811-833 3-25 (189)
355 3qwz_A Transitional endoplasmi 96.8 0.0012 4E-08 69.7 5.8 55 303-378 133-189 (211)
356 4a82_A Cystic fibrosis transme 96.8 0.00053 1.8E-08 83.3 3.8 64 858-942 485-548 (578)
357 2pze_A Cystic fibrosis transme 96.8 0.0026 8.9E-08 67.9 8.6 53 858-924 138-191 (229)
358 3b60_A Lipid A export ATP-bind 96.8 0.00077 2.6E-08 81.9 4.8 64 858-942 488-551 (582)
359 3iij_A Coilin-interacting nucl 96.8 0.00089 3.1E-08 68.0 4.6 34 442-475 9-42 (180)
360 2zts_A Putative uncharacterize 96.8 0.002 6.9E-08 68.4 7.5 38 439-476 25-66 (251)
361 1y63_A LMAJ004144AAA protein; 96.7 0.00081 2.8E-08 68.9 4.1 35 441-475 7-42 (184)
362 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0038 1.3E-07 75.1 10.4 55 858-925 166-220 (538)
363 2eyu_A Twitching motility prot 96.7 0.0008 2.7E-08 73.4 4.2 71 441-512 22-107 (261)
364 2b8t_A Thymidine kinase; deoxy 96.7 0.0029 9.8E-08 67.4 8.2 68 812-880 15-101 (223)
365 3crm_A TRNA delta(2)-isopenten 96.7 0.001 3.5E-08 74.7 4.8 36 445-480 6-41 (323)
366 3e1s_A Exodeoxyribonuclease V, 96.7 0.0011 3.6E-08 80.5 5.2 32 444-475 204-238 (574)
367 2i3b_A HCR-ntpase, human cance 96.7 0.0018 6.3E-08 67.1 6.2 24 445-468 2-25 (189)
368 2q6t_A DNAB replication FORK h 96.7 0.0043 1.5E-07 72.8 10.1 39 439-477 195-237 (444)
369 3vaa_A Shikimate kinase, SK; s 96.7 0.00089 3E-08 69.5 3.7 35 807-841 23-57 (199)
370 3kb2_A SPBC2 prophage-derived 96.6 0.0012 4E-08 66.0 4.4 31 446-476 3-33 (173)
371 1kag_A SKI, shikimate kinase I 96.6 0.0013 4.3E-08 66.2 4.5 30 444-473 4-33 (173)
372 3thx_B DNA mismatch repair pro 96.6 0.0028 9.7E-08 80.4 8.6 27 440-466 669-695 (918)
373 3thx_A DNA mismatch repair pro 96.6 0.0026 8.8E-08 81.0 8.2 106 810-926 663-788 (934)
374 2ius_A DNA translocase FTSK; n 96.6 0.0082 2.8E-07 71.5 11.9 76 869-956 297-375 (512)
375 3trf_A Shikimate kinase, SK; a 96.6 0.00099 3.4E-08 67.8 3.5 33 809-841 5-37 (185)
376 3j16_B RLI1P; ribosome recycli 96.6 0.0015 5E-08 79.7 5.5 55 858-925 229-283 (608)
377 1via_A Shikimate kinase; struc 96.6 0.0011 3.7E-08 67.1 3.7 30 446-475 6-35 (175)
378 2ius_A DNA translocase FTSK; n 96.6 0.0085 2.9E-07 71.3 11.7 76 503-602 296-374 (512)
379 2iut_A DNA translocase FTSK; n 96.5 0.012 4E-07 70.7 12.9 74 870-955 345-420 (574)
380 1gvn_B Zeta; postsegregational 96.5 0.0021 7.3E-08 71.0 6.1 39 442-480 31-69 (287)
381 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0038 1.3E-07 67.7 8.0 38 444-481 4-44 (260)
382 2iyv_A Shikimate kinase, SK; t 96.5 0.0013 4.6E-08 66.9 4.0 32 445-476 3-34 (184)
383 3b85_A Phosphate starvation-in 96.5 0.002 6.9E-08 67.9 5.4 23 810-832 23-45 (208)
384 2pze_A Cystic fibrosis transme 96.5 0.002 7E-08 68.8 5.5 31 438-468 28-58 (229)
385 3bk7_A ABC transporter ATP-bin 96.5 0.0051 1.8E-07 75.0 9.7 56 858-925 479-534 (607)
386 1zuh_A Shikimate kinase; alpha 96.5 0.0014 4.8E-08 65.7 4.0 32 445-476 8-39 (168)
387 3upu_A ATP-dependent DNA helic 96.5 0.0028 9.6E-08 74.6 7.1 23 446-468 47-69 (459)
388 3bh0_A DNAB-like replicative h 96.5 0.0088 3E-07 66.9 10.6 38 439-476 63-103 (315)
389 2ewv_A Twitching motility prot 96.5 0.0024 8.2E-08 73.3 6.0 77 436-512 128-218 (372)
390 2cdn_A Adenylate kinase; phosp 96.5 0.0017 5.9E-08 67.2 4.4 34 443-476 19-52 (201)
391 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0045 1.5E-07 74.5 8.6 56 858-925 409-464 (538)
392 2yl4_A ATP-binding cassette SU 96.4 0.0016 5.6E-08 79.3 4.7 31 438-468 364-394 (595)
393 2c95_A Adenylate kinase 1; tra 96.4 0.0017 5.7E-08 66.5 4.0 34 443-476 8-41 (196)
394 1aky_A Adenylate kinase; ATP:A 96.4 0.0017 5.9E-08 68.2 4.2 33 443-475 3-35 (220)
395 3upu_A ATP-dependent DNA helic 96.4 0.0026 8.7E-08 75.0 6.1 23 811-833 47-69 (459)
396 2bbs_A Cystic fibrosis transme 96.4 0.0036 1.2E-07 69.3 6.9 54 858-925 167-221 (290)
397 1tev_A UMP-CMP kinase; ploop, 96.4 0.0016 5.5E-08 66.3 3.7 32 444-475 3-34 (196)
398 3dm5_A SRP54, signal recogniti 96.4 0.014 4.7E-07 68.3 12.0 70 443-512 99-191 (443)
399 3tiw_A Transitional endoplasmi 96.4 0.0043 1.5E-07 64.2 6.9 53 303-376 130-184 (187)
400 2yl4_A ATP-binding cassette SU 96.4 0.0024 8E-08 77.9 5.7 54 858-925 491-544 (595)
401 2rhm_A Putative kinase; P-loop 96.4 0.0014 4.9E-08 66.9 3.2 33 807-839 3-35 (193)
402 4aby_A DNA repair protein RECN 96.4 0.0047 1.6E-07 71.3 8.0 64 858-942 303-368 (415)
403 1kag_A SKI, shikimate kinase I 96.4 0.0019 6.4E-08 64.9 4.0 30 810-839 5-34 (173)
404 2r6a_A DNAB helicase, replicat 96.4 0.005 1.7E-07 72.4 8.2 113 805-921 199-362 (454)
405 3cm0_A Adenylate kinase; ATP-b 96.4 0.0017 5.9E-08 66.0 3.7 31 444-474 4-34 (186)
406 4f4c_A Multidrug resistance pr 96.4 0.0026 8.9E-08 84.4 6.2 41 438-478 438-480 (1321)
407 1zd8_A GTP:AMP phosphotransfer 96.3 0.0018 6.1E-08 68.5 3.8 34 442-475 5-38 (227)
408 1e6c_A Shikimate kinase; phosp 96.3 0.0019 6.6E-08 64.7 3.8 31 445-475 3-33 (173)
409 3lw7_A Adenylate kinase relate 96.3 0.0018 6.3E-08 64.3 3.5 29 446-475 3-31 (179)
410 3t61_A Gluconokinase; PSI-biol 96.3 0.0025 8.6E-08 66.0 4.6 32 444-475 18-49 (202)
411 1kht_A Adenylate kinase; phosp 96.3 0.0017 5.9E-08 66.0 3.3 26 444-469 3-28 (192)
412 1zp6_A Hypothetical protein AT 96.3 0.0011 3.9E-08 67.6 2.0 40 806-845 6-45 (191)
413 2ze6_A Isopentenyl transferase 96.3 0.0022 7.4E-08 69.5 4.2 32 446-477 3-34 (253)
414 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.3E-08 64.6 3.4 30 812-841 4-33 (173)
415 1gvn_B Zeta; postsegregational 96.3 0.0049 1.7E-07 68.1 7.0 36 809-844 33-68 (287)
416 2iut_A DNA translocase FTSK; n 96.3 0.017 5.9E-07 69.3 12.1 74 505-602 345-420 (574)
417 1s96_A Guanylate kinase, GMP k 96.3 0.0031 1.1E-07 66.9 5.1 103 806-935 13-152 (219)
418 1vma_A Cell division protein F 96.3 0.008 2.7E-07 67.1 8.6 72 441-512 101-195 (306)
419 4eun_A Thermoresistant glucoki 96.3 0.0029 1E-07 65.6 4.8 37 442-480 27-63 (200)
420 1knq_A Gluconate kinase; ALFA/ 96.3 0.0025 8.7E-08 64.2 4.2 31 443-473 7-37 (175)
421 1via_A Shikimate kinase; struc 96.3 0.002 6.8E-08 65.1 3.4 29 811-839 6-34 (175)
422 2vli_A Antibiotic resistance p 96.2 0.0021 7E-08 65.1 3.5 30 444-473 5-34 (183)
423 2bwj_A Adenylate kinase 5; pho 96.2 0.0022 7.6E-08 65.7 3.7 32 444-475 12-43 (199)
424 2pez_A Bifunctional 3'-phospho 96.2 0.0027 9.3E-08 64.4 4.3 38 442-479 3-43 (179)
425 2p5t_B PEZT; postsegregational 96.2 0.0038 1.3E-07 67.4 5.7 38 808-845 31-68 (253)
426 1tf7_A KAIC; homohexamer, hexa 96.2 0.0085 2.9E-07 71.8 9.2 111 439-556 276-417 (525)
427 3iij_A Coilin-interacting nucl 96.2 0.0027 9.3E-08 64.4 4.2 33 808-840 10-42 (180)
428 3g5u_A MCG1178, multidrug resi 96.2 0.0011 3.9E-08 87.5 1.7 41 438-478 410-452 (1284)
429 1qf9_A UMP/CMP kinase, protein 96.2 0.0027 9.4E-08 64.5 4.2 32 444-475 6-37 (194)
430 3thx_A DNA mismatch repair pro 96.2 0.0066 2.3E-07 77.3 8.6 25 442-466 660-684 (934)
431 1ak2_A Adenylate kinase isoenz 96.2 0.0027 9.3E-08 67.5 4.3 32 444-475 16-47 (233)
432 2zts_A Putative uncharacterize 96.2 0.0049 1.7E-07 65.4 6.2 38 805-842 26-67 (251)
433 1ly1_A Polynucleotide kinase; 96.2 0.0022 7.4E-08 64.6 3.2 28 445-472 3-31 (181)
434 2bbs_A Cystic fibrosis transme 96.2 0.004 1.4E-07 69.0 5.6 31 438-468 58-88 (290)
435 3be4_A Adenylate kinase; malar 96.2 0.0022 7.6E-08 67.4 3.4 32 444-475 5-36 (217)
436 4f4c_A Multidrug resistance pr 96.2 0.0026 9E-08 84.3 4.8 56 857-926 561-616 (1321)
437 3umf_A Adenylate kinase; rossm 96.2 0.0032 1.1E-07 66.8 4.5 41 440-482 25-65 (217)
438 1vma_A Cell division protein F 96.2 0.011 3.7E-07 66.0 9.0 72 808-879 103-197 (306)
439 2px0_A Flagellar biosynthesis 96.1 0.026 9.1E-07 62.5 12.0 36 442-477 103-142 (296)
440 3uie_A Adenylyl-sulfate kinase 96.1 0.0033 1.1E-07 65.2 4.4 39 442-480 23-64 (200)
441 3dl0_A Adenylate kinase; phosp 96.1 0.0028 9.6E-08 66.3 4.0 30 446-475 2-31 (216)
442 1ukz_A Uridylate kinase; trans 96.1 0.003 1E-07 65.3 4.1 34 443-476 14-47 (203)
443 3kl4_A SRP54, signal recogniti 96.1 0.008 2.7E-07 70.2 8.0 72 809-880 97-191 (433)
444 1y63_A LMAJ004144AAA protein; 96.1 0.0019 6.6E-08 66.1 2.5 32 809-840 10-42 (184)
445 2iyv_A Shikimate kinase, SK; t 96.1 0.0029 1E-07 64.3 3.8 30 811-840 4-33 (184)
446 3g5u_A MCG1178, multidrug resi 96.1 0.0045 1.5E-07 81.9 6.6 27 807-833 414-440 (1284)
447 3kl4_A SRP54, signal recogniti 96.1 0.011 3.6E-07 69.1 9.0 71 443-513 96-189 (433)
448 2pt5_A Shikimate kinase, SK; a 96.1 0.003 1E-07 63.0 3.9 30 446-475 2-31 (168)
449 3fb4_A Adenylate kinase; psych 96.1 0.0029 9.9E-08 66.1 3.8 30 446-475 2-31 (216)
450 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0026 8.9E-08 72.2 3.6 30 445-474 25-54 (359)
451 1g5t_A COB(I)alamin adenosyltr 96.1 0.022 7.4E-07 59.4 10.3 101 445-556 29-163 (196)
452 1zak_A Adenylate kinase; ATP:A 96.1 0.0022 7.6E-08 67.5 2.8 32 443-474 4-35 (222)
453 3e1s_A Exodeoxyribonuclease V, 96.1 0.0021 7.3E-08 77.9 3.0 32 810-841 205-239 (574)
454 3tlx_A Adenylate kinase 2; str 96.1 0.0031 1.1E-07 67.8 4.0 34 442-475 27-60 (243)
455 1wb9_A DNA mismatch repair pro 96.1 0.0091 3.1E-07 75.0 8.7 106 810-926 608-733 (800)
456 1zuh_A Shikimate kinase; alpha 96.0 0.0033 1.1E-07 62.9 3.4 30 811-840 9-38 (168)
457 2ze6_A Isopentenyl transferase 96.0 0.0029 1E-07 68.5 3.2 31 812-842 4-34 (253)
458 3nwj_A ATSK2; P loop, shikimat 96.0 0.0031 1.1E-07 68.3 3.3 32 444-475 48-79 (250)
459 2v54_A DTMP kinase, thymidylat 96.0 0.0048 1.6E-07 63.5 4.6 34 443-476 3-37 (204)
460 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0064 2.2E-07 65.9 5.7 36 810-845 5-43 (260)
461 1g5t_A COB(I)alamin adenosyltr 95.9 0.0084 2.9E-07 62.5 6.2 115 811-942 30-177 (196)
462 2cdn_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 64.2 3.8 31 810-840 21-51 (201)
463 3lw7_A Adenylate kinase relate 95.9 0.0037 1.3E-07 62.1 3.3 28 812-840 4-31 (179)
464 2r8r_A Sensor protein; KDPD, P 95.9 0.018 6.2E-07 61.3 8.6 124 812-953 9-173 (228)
465 3t61_A Gluconokinase; PSI-biol 95.9 0.0048 1.6E-07 63.8 4.1 31 809-839 18-48 (202)
466 3bk7_A ABC transporter ATP-bin 95.9 0.0086 2.9E-07 73.0 6.9 29 440-468 378-406 (607)
467 1aky_A Adenylate kinase; ATP:A 95.8 0.0043 1.5E-07 65.2 3.7 32 809-840 4-35 (220)
468 3sr0_A Adenylate kinase; phosp 95.8 0.0052 1.8E-07 64.6 4.3 35 446-482 2-36 (206)
469 2iw3_A Elongation factor 3A; a 95.8 0.0056 1.9E-07 77.9 5.3 53 858-926 556-608 (986)
470 3bgw_A DNAB-like replicative h 95.8 0.02 6.8E-07 67.2 9.6 38 440-477 193-233 (444)
471 1e6c_A Shikimate kinase; phosp 95.8 0.0042 1.4E-07 62.2 3.4 29 811-839 4-32 (173)
472 3cm0_A Adenylate kinase; ATP-b 95.8 0.004 1.4E-07 63.2 3.2 29 811-839 6-34 (186)
473 1e4v_A Adenylate kinase; trans 95.8 0.0046 1.6E-07 64.8 3.7 30 446-475 2-31 (214)
474 4eun_A Thermoresistant glucoki 95.8 0.0046 1.6E-07 64.1 3.7 36 808-845 28-63 (200)
475 2px0_A Flagellar biosynthesis 95.8 0.024 8E-07 62.9 9.6 68 809-878 105-192 (296)
476 1cke_A CK, MSSA, protein (cyti 95.8 0.0065 2.2E-07 63.7 4.9 31 444-474 5-35 (227)
477 3ux8_A Excinuclease ABC, A sub 95.8 0.012 4E-07 72.7 7.9 55 857-924 209-265 (670)
478 2vli_A Antibiotic resistance p 95.8 0.0039 1.3E-07 63.0 3.0 29 810-838 6-34 (183)
479 1tev_A UMP-CMP kinase; ploop, 95.8 0.0041 1.4E-07 63.3 3.2 30 810-839 4-33 (196)
480 1q57_A DNA primase/helicase; d 95.8 0.017 5.7E-07 68.8 8.9 38 440-477 238-279 (503)
481 3bh0_A DNAB-like replicative h 95.8 0.026 9E-07 63.0 10.0 38 805-842 64-104 (315)
482 1ex7_A Guanylate kinase; subst 95.8 0.0075 2.6E-07 62.4 5.1 25 445-469 2-26 (186)
483 2pbr_A DTMP kinase, thymidylat 95.7 0.0068 2.3E-07 61.7 4.6 31 446-476 2-35 (195)
484 4aby_A DNA repair protein RECN 95.7 0.0095 3.3E-07 68.7 6.3 30 439-469 56-85 (415)
485 1q57_A DNA primase/helicase; d 95.7 0.021 7.2E-07 67.9 9.5 39 805-843 238-280 (503)
486 1wb9_A DNA mismatch repair pro 95.7 0.023 7.9E-07 71.3 10.1 25 443-467 606-630 (800)
487 2c95_A Adenylate kinase 1; tra 95.7 0.0046 1.6E-07 63.1 3.2 32 809-840 9-40 (196)
488 2jaq_A Deoxyguanosine kinase; 95.7 0.0064 2.2E-07 62.4 4.3 29 446-474 2-30 (205)
489 1qf9_A UMP/CMP kinase, protein 95.7 0.0048 1.6E-07 62.6 3.2 32 809-840 6-37 (194)
490 3foz_A TRNA delta(2)-isopenten 95.7 0.0064 2.2E-07 67.7 4.3 38 444-481 10-47 (316)
491 2bbw_A Adenylate kinase 4, AK4 95.7 0.0067 2.3E-07 65.0 4.4 31 443-473 26-56 (246)
492 3crm_A TRNA delta(2)-isopenten 95.7 0.013 4.6E-07 65.6 7.0 33 810-842 6-38 (323)
493 2fz4_A DNA repair protein RAD2 95.7 0.01 3.6E-07 63.4 5.9 33 811-843 110-142 (237)
494 3a8t_A Adenylate isopentenyltr 95.7 0.015 5.1E-07 65.6 7.3 35 444-478 40-74 (339)
495 3umf_A Adenylate kinase; rossm 95.7 0.0047 1.6E-07 65.5 3.1 39 806-846 26-64 (217)
496 1knq_A Gluconate kinase; ALFA/ 95.7 0.0054 1.8E-07 61.8 3.4 29 811-839 10-38 (175)
497 1ak2_A Adenylate kinase isoenz 95.6 0.0059 2E-07 64.9 3.8 31 810-840 17-47 (233)
498 2o8b_B DNA mismatch repair pro 95.6 0.024 8.1E-07 73.0 10.0 107 804-922 777-911 (1022)
499 2q6t_A DNAB replication FORK h 95.6 0.018 6.3E-07 67.4 8.3 38 805-842 196-237 (444)
500 3dl0_A Adenylate kinase; phosp 95.6 0.0054 1.9E-07 64.1 3.3 29 812-840 3-31 (216)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-95 Score=904.04 Aligned_cols=601 Identities=41% Similarity=0.710 Sum_probs=489.2
Q ss_pred HHHhhh--cCCeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEcCCchhcc
Q 001395 307 CAASWL--YSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVS 384 (1086)
Q Consensus 307 ~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~ 384 (1086)
.++.+| .+|||..||.+.++..+..+.|.|++++|. +.++|+++|.+.+.....
T Consensus 134 ~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~---------------------~~~~v~~~T~i~~~~~~~--- 189 (806)
T 3cf2_A 134 YLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEPI--- 189 (806)
T ss_dssp THHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSS---------------------SEEECCTTSBCCBCSCCB---
T ss_pred HHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCC---------------------CCeEECCCcEEEEecccc---
Confidence 345555 469999999999999999999999999986 568899999888643210
Q ss_pred cccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHH
Q 001395 385 KSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARL 463 (1086)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAra 463 (1086)
.... .........|+||+|++++++.|++++.++. .++.|..+|+.+++|||||||||||||+|||+
T Consensus 190 ----~~~~--------~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 190 ----KRED--------EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp ----CCCT--------TSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHH
T ss_pred ----Cccc--------ccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHH
Confidence 0000 0011223457899999999999999999873 46899999999999999999999999999999
Q ss_pred HHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc
Q 001395 464 CAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 543 (1086)
Q Consensus 464 lA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~ 543 (1086)
+|++++.+|+.++++++.++|.|++++.++.+|+.|+..+||||||||||.|+++++...++...+++.+|+.+|+++..
T Consensus 258 iA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred HHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999888788889999999999999988
Q ss_pred CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHH
Q 001395 544 TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA 623 (1086)
Q Consensus 544 ~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~ 623 (1086)
+++|+||++||+++.+|++++|+||||++|++ +.|+.++|.+||+.+++++... .+.+++.+|..
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i--------------~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~ 402 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEEC--------------CCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHH
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEec--------------CCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHh
Confidence 89999999999999999999999999999999 9999999999999999887654 67789999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCcc
Q 001395 624 THGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPT 703 (1086)
Q Consensus 624 t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1086)
|+||+|+||.+||++|++.|++|........+.
T Consensus 403 T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~----------------------------------------------- 435 (806)
T 3cf2_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLEDE----------------------------------------------- 435 (806)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCC-----------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcccccccccc-----------------------------------------------
Confidence 999999999999999999999986542110000
Q ss_pred ccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhH
Q 001395 704 SLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREV 783 (1086)
Q Consensus 704 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~v 783 (1086)
....+....+.++.+||..|+..+.|+.+++...+.|+++|++++|++++
T Consensus 436 ------------------------------~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~ 485 (806)
T 3cf2_A 436 ------------------------------TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp ------------------------------CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHH
T ss_pred ------------------------------ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHH
Confidence 00012223467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHH
Q 001395 784 KTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAK 863 (1086)
Q Consensus 784 k~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~ 863 (1086)
|++|++.+.||+++++.|.++|+.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..
T Consensus 486 k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~ 565 (806)
T 3cf2_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCchhhhhcCCC-CCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeec
Q 001395 864 ARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYV 942 (1086)
Q Consensus 864 A~~~~p~ILflDEid~L~~~r~~~-~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~ 942 (1086)
|+..+||||||||||+|++.|+.. +++.+..++++++||++||++....+|+||+|||+|+.||+|++||||||++|+|
T Consensus 566 Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC
T ss_pred HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEE
Confidence 999999999999999999998653 2334667899999999999998888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCC--------------------
Q 001395 943 GPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA-------------------- 1002 (1086)
Q Consensus 943 ~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~-------------------- 1002 (1086)
++|+.++|.+||+.+++++++..+++++.||+.|+||||+||+++|++|++.|+++.+..
T Consensus 646 ~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (806)
T 3cf2_A 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEED 725 (806)
T ss_dssp -----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---------------------
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999986532
Q ss_pred ---CCCCHHHHHHHHHhhCCC----chhHHHHHHHHHHHH
Q 001395 1003 ---SRITMQHLKTAIRHVQPS----EIHSYKELSAKFQRL 1035 (1086)
Q Consensus 1003 ---~~It~~d~~~al~~~~p~----~~~~~~~~~~~~~~~ 1035 (1086)
..|+++||++|+++++|+ +.+.|++|.+.|++.
T Consensus 726 ~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp --CCC----CCTTTC---------------CCCC------
T ss_pred cccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 259999999999999997 567899998888765
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=4.8e-70 Score=686.00 Aligned_cols=600 Identities=41% Similarity=0.713 Sum_probs=497.3
Q ss_pred HHHhhhc--CCeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEcCCchhcc
Q 001395 307 CAASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVS 384 (1086)
Q Consensus 307 ~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~ 384 (1086)
+++.++. +|||.+|+.+.+........|.|+.+.|. +.+.|.++|.+.......
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~---------------------~~~~v~~~t~~~~~~~~~--- 189 (806)
T 1ypw_A 134 YLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEPI--- 189 (806)
T ss_dssp TTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTT---------------------TCCBCCSSSEEEECSCCC---
T ss_pred HHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCC---------------------CCceecCCeEEEecCccc---
Confidence 4455554 69999999999988788899999999886 567888888888743210
Q ss_pred cccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHH
Q 001395 385 KSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARL 463 (1086)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAra 463 (1086)
..... ........|++|+|++++++.|++++..+. .++.|.++++.++.++||+||||||||+||++
T Consensus 190 ---~~~~~---------~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 190 ---KREDE---------EESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp ---CCCTT---------SCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHH
T ss_pred ---cchhh---------hcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 00000 001223457899999999999999999863 36888999999999999999999999999999
Q ss_pred HHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc
Q 001395 464 CAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 543 (1086)
Q Consensus 464 lA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~ 543 (1086)
+|++++.+++.+++.++.+.+.|+.+..++.+|+.+....|+++||||+|.+++++.....+...++..+|+.+|+++..
T Consensus 258 la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999988777778889999999999999988
Q ss_pred CCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHH
Q 001395 544 TDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA 623 (1086)
Q Consensus 544 ~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~ 623 (1086)
...+++|++||+++.++++++++|||++.+.+ +.|+.++|.+|++.+++.+... .+.++..++..
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i--------------~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~ 402 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECC--------------CCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHS
T ss_pred cccEEEecccCCchhcCHHHhccccccccccc--------------CCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHh
Confidence 88999999999999999999999999999999 9999999999999988876543 55668889999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCcc
Q 001395 624 THGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPT 703 (1086)
Q Consensus 624 t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1086)
++||+++|+..++++|++.++++........+
T Consensus 403 t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~------------------------------------------------ 434 (806)
T 1ypw_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED------------------------------------------------ 434 (806)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH------------------------------------------------
T ss_pred hcCcchHHHHHHHHHHHHHHHhhhccccchhh------------------------------------------------
Confidence 99999999999999999998876432110000
Q ss_pred ccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhH
Q 001395 704 SLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREV 783 (1086)
Q Consensus 704 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~v 783 (1086)
..+ ..+......++.+||..++....|+..++...+.+.+.|++++|++++
T Consensus 435 -----------------~~~------------~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~v 485 (806)
T 1ypw_A 435 -----------------ETI------------DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp -----------------HHC------------CHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCH
T ss_pred -----------------hcc------------chhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhh
Confidence 000 001122345677899999999999999988889999999999999999
Q ss_pred HHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHH
Q 001395 784 KTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAK 863 (1086)
Q Consensus 784 k~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~ 863 (1086)
++.|.+.+.+++.+++.+..+++.++.++||+||||||||++|+++|++++.+|+.++++++.++|+|+.++.++.+|+.
T Consensus 486 k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred hhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEecCchhhhhcCCCCC-CCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeec
Q 001395 864 ARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYV 942 (1086)
Q Consensus 864 A~~~~p~ILflDEid~L~~~r~~~~~-~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~ 942 (1086)
|+...||||||||||.++..|+.... ......+++++||.+|++.....+++||+|||+++.||+|++|||||++.|+|
T Consensus 566 a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~ 645 (806)
T 1ypw_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCC
T ss_pred HHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeec
Confidence 99999999999999999887754321 12356789999999999988888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCC--------------------
Q 001395 943 GPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA-------------------- 1002 (1086)
Q Consensus 943 ~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~-------------------- 1002 (1086)
++|+.++|.+||+.++++.++..++++..|++.++||+|+||+++|++|++.|+++.+..
T Consensus 646 ~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (806)
T 1ypw_A 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEED 725 (806)
T ss_dssp CCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-----------------------
T ss_pred CCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccc
Confidence 999999999999999999999889999999999999999999999999999999876432
Q ss_pred ---CCCCHHHHHHHHHhhCCC----chhHHHHHHHHHHH
Q 001395 1003 ---SRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 1034 (1086)
Q Consensus 1003 ---~~It~~d~~~al~~~~p~----~~~~~~~~~~~~~~ 1034 (1086)
..|+.+||++++..++|+ ..+.|+.|.+.|+.
T Consensus 726 ~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp -CCTTTTTTSSCCCCCC----------------------
T ss_pred cccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 358899999998888776 46678888777765
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-51 Score=470.35 Aligned_cols=262 Identities=41% Similarity=0.703 Sum_probs=245.7
Q ss_pred hCchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc
Q 001395 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 836 (1086)
Q Consensus 757 ~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~ 836 (1086)
+.|...++...+.|+++|+||+|++++|++|++.+.||+.+|+.|+++|+++|+|+|||||||||||++|+|+|++++.+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 44666667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEE
Q 001395 837 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVT 915 (1086)
Q Consensus 837 fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~ 915 (1086)
|+.+++++++++|+|++++.++.+|..|+..+||||||||||++++.|....++ .....+++++||++||++....+|+
T Consensus 210 f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 999999999999999999999999999999999999999999999988655433 2345678999999999998889999
Q ss_pred EEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 916 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 916 VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++|++.||+.|+||||+||+++|++|++.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCCC
Q 001395 996 IEENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 996 ~~~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
+++. ...|+++||..|++++.+.
T Consensus 370 ir~~--~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 370 LRER--RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHTT--CSBCCHHHHHHHHHHHHHH
T ss_pred HHcC--CCCcCHHHHHHHHHHHhCc
Confidence 9986 5679999999999987654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-48 Score=449.46 Aligned_cols=253 Identities=37% Similarity=0.668 Sum_probs=238.4
Q ss_pred hhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc
Q 001395 766 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 845 (1086)
Q Consensus 766 ~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel 845 (1086)
..+.|+++|+||+|++++|++|++.+.+|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 846 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
+++|+|++++.++.+|..|+..+||||||||+|+++..|...+.+ .....+++++||++||+.....+|+||+|||+|+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999999998654432 2345688999999999998889999999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 1004 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~ 1004 (1086)
.||||++||||||+.|+|++|+.++|.+||+.|++++++..++|++.||..|+||||+||+++|++|++.|+++. ...
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--~~~ 410 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--RMQ 410 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--CSC
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 567
Q ss_pred CCHHHHHHHHHhhCCC
Q 001395 1005 ITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1005 It~~d~~~al~~~~p~ 1020 (1086)
|+++||.+|++++.++
T Consensus 411 It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 411 VTAEDFKQAKERVMKN 426 (437)
T ss_dssp BCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCC
Confidence 9999999999887543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-47 Score=445.23 Aligned_cols=251 Identities=40% Similarity=0.671 Sum_probs=237.0
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
.+.|+++|+||+|++++|++|++.+.+|+.+++.|.++|+++|+|+|||||||||||++|+|||++++.+|+.+++++++
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 847 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
++|+|++++.++.+|..|+..+||||||||+|+++..|+..+.+ .....++++++|.+||+.....+|+||+|||+|+.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 99999999999999999999999999999999999988665433 23346788999999999988889999999999999
Q ss_pred CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001395 926 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 1005 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~I 1005 (1086)
||+|++||||||+.|+|++|+.++|.+||+.+++++++..+++++.||+.|+||+|+||+++|++|++.|+++. ...|
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~--~~~i 438 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKVA 438 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT--CSSB
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 5679
Q ss_pred CHHHHHHHHHhhCC
Q 001395 1006 TMQHLKTAIRHVQP 1019 (1086)
Q Consensus 1006 t~~d~~~al~~~~p 1019 (1086)
+.+||..|++++.+
T Consensus 439 t~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 439 TEKDFLKAVDKVIS 452 (467)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999988743
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-48 Score=449.80 Aligned_cols=260 Identities=37% Similarity=0.658 Sum_probs=242.4
Q ss_pred chhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEE
Q 001395 759 PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFL 838 (1086)
Q Consensus 759 ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi 838 (1086)
|........+.|+++|+||+|++++|++|++.+.+|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 33344455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 839 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 839 ~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
.+++++++++|+|++++.++.+|..|+..+||||||||+|++++.|...+.. .....+++++||++||+.....+|+||
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 9999999999999999999999999999999999999999999988655432 234567899999999999888899999
Q ss_pred EecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 918 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 918 ~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~ 997 (1086)
+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|++++++..++|++.||+.|+||||+||+++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHhhCCC
Q 001395 998 ENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 998 ~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
+. ...|+.+||.+|++++.+.
T Consensus 405 ~~--~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 405 DD--RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp TT--CSSBCHHHHHHHHHHHHHT
T ss_pred cC--CCCCCHHHHHHHHHHHHhc
Confidence 86 5579999999999988765
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-47 Score=447.79 Aligned_cols=254 Identities=39% Similarity=0.629 Sum_probs=239.4
Q ss_pred hhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc
Q 001395 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 844 (1086)
Q Consensus 765 ~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se 844 (1086)
...+.|+++|+||+|++++|++|++.+.+|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 845 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
+.++|+|++++.++.+|..|+..+||||||||+|++++.|.....+ .....+++++||+.||+.....+|+||+|||+|
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999999988654332 233457789999999999888899999999999
Q ss_pred CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 001395 924 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003 (1086)
Q Consensus 924 ~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~ 1003 (1086)
+.||||++||||||+.|+|++|+.++|.+||+.+++++++..+++++.||+.|+||||+||+++|++|++.|+++. ..
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--~~ 408 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--QS 408 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT--CS
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 56
Q ss_pred CCCHHHHHHHHHhhCCC
Q 001395 1004 RITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1004 ~It~~d~~~al~~~~p~ 1020 (1086)
.|+.+||.+|+.+++|+
T Consensus 409 ~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 409 SVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SBCHHHHHHHHHSCSSS
T ss_pred CcCHHHHHHHHHHHhCC
Confidence 79999999999999886
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-46 Score=436.48 Aligned_cols=250 Identities=38% Similarity=0.631 Sum_probs=236.3
Q ss_pred hhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc
Q 001395 766 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 845 (1086)
Q Consensus 766 ~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel 845 (1086)
..+.|+++|+||+|++++|++|++.+.+|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 846 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
+++|+|++++.++.+|..|+..+||||||||+|+++..|.....+ .....+++++||++||++....+|+||+|||+|+
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999999988654432 3456789999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEeecC-CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 001395 925 KIDPALLRPGRFDRLLYVG-PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~-~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~ 1003 (1086)
.||||++||||||+.|+|| +|+.++|..||+.+++++++..+++++.||..|+||||+||+++|++|++.|+++. ..
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--~~ 400 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RY 400 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--CS
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--CC
Confidence 9999999999999999996 89999999999999999999999999999999999999999999999999999986 56
Q ss_pred CCCHHHHHHHHHhh
Q 001395 1004 RITMQHLKTAIRHV 1017 (1086)
Q Consensus 1004 ~It~~d~~~al~~~ 1017 (1086)
.|+++||++|+.+.
T Consensus 401 ~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 401 VILQSDLEEAYATQ 414 (428)
T ss_dssp SBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999999764
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-43 Score=407.08 Aligned_cols=261 Identities=35% Similarity=0.561 Sum_probs=226.0
Q ss_pred cCCceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeE
Q 001395 369 NHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGV 447 (1086)
Q Consensus 369 ~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~v 447 (1086)
.+.+.|.+..........++....|....+ .....+...|+||||++++|+.|+++|.+|. .++.|.++|+.+++|+
T Consensus 108 ~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGv 185 (405)
T 4b4t_J 108 KASQRVCLRSDSYMLHKVLENKADPLVSLM--MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGV 185 (405)
T ss_dssp CSSCEEEEETTTCSCCEECCCCCSCCTTSC--EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCE
T ss_pred CCcceeeeecccceeeeecCcccCchhhhc--cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCce
Confidence 345666666555544444444333332222 1223445678999999999999999999973 4699999999999999
Q ss_pred EEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC---c
Q 001395 448 LLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---E 524 (1086)
Q Consensus 448 LL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~---~ 524 (1086)
|||||||||||++|+++|++++++|+.++++++.++|+|++++.++.+|+.|+..+||||||||+|+++++|..+. +
T Consensus 186 LL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~ 265 (405)
T 4b4t_J 186 ILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265 (405)
T ss_dssp EEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGG
T ss_pred EEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876543 2
Q ss_pred hhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHH
Q 001395 525 ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHAL 604 (1086)
Q Consensus 525 ~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~ 604 (1086)
....+++.+|++.||++....+|+||+|||+++.||||++||||||+.|+| +.|+.++|.+||+.+
T Consensus 266 ~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i--------------~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF--------------PPPSVAARAEILRIH 331 (405)
T ss_dssp GHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEEC--------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEc--------------CCcCHHHHHHHHHHH
Confidence 345778999999999999899999999999999999999999999999999 999999999999999
Q ss_pred HccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 605 LSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 605 l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
++++++. .+.+++.+|+.|+||+|+||.++|++|++.|+++
T Consensus 332 ~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 332 SRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9988754 5678999999999999999999999999999875
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-42 Score=399.64 Aligned_cols=227 Identities=36% Similarity=0.591 Sum_probs=210.7
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc
Q 001395 405 TVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 405 ~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~ 483 (1086)
.+..+|+||+|++++|+.|++.|.++. .++.|..+|+++++|||||||||||||++|+++|++++++|+.++++++.++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 445678999999999999999999974 4689999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC---chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 484 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
|+|++++.++.+|+.|+..+||||||||+|+++++|...+ +....+++.+|++.||++...++|+||+|||+++.||
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 9999999999999999999999999999999999885433 3355788899999999998889999999999999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
|||+||||||+.|+| +.|+.++|.+||+.+++++++. .+.+++.+|..|+||+|+||.++|++|+
T Consensus 336 pALlRpGRfD~~I~v--------------~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 336 PALIRPGRIDRKILF--------------ENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp TTSSCTTTEEEEECC--------------CCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHhcCCceeEEEEc--------------CCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999988754 5678999999999999999999999999
Q ss_pred HHHHHH
Q 001395 641 LVCLRR 646 (1086)
Q Consensus 641 ~~a~rr 646 (1086)
+.|+++
T Consensus 401 ~~Air~ 406 (437)
T 4b4t_I 401 LLALRE 406 (437)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999875
No 11
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=397.59 Aligned_cols=227 Identities=37% Similarity=0.599 Sum_probs=210.3
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc
Q 001395 405 TVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 405 ~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~ 483 (1086)
.+...|+||||++++|+.|++.|.+|. .++.|..+|+.+++|+|||||||||||++|+++|++++++|+.++++++.++
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 445678999999999999999999984 4689999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC---chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 484 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
|+|++++.++.+|..|+...||||||||+|+++++|...+ +....+++.+||+.||++...++++||+|||+++.||
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 9999999999999999999999999999999999885433 2345678899999999998889999999999999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
|||+||||||+.|+| +.|+.++|.+||+.++++++.. .+.+++.+|..|+||+|+||.++|++|+
T Consensus 335 pAllRpGRfD~~I~i--------------~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 335 PALLRPGRLDRKVEI--------------PLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAG 399 (437)
T ss_dssp TTTTSTTSEEEEECC--------------CCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred HHHhCCCccceeeec--------------CCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999988754 5678999999999999999999999999
Q ss_pred HHHHHH
Q 001395 641 LVCLRR 646 (1086)
Q Consensus 641 ~~a~rr 646 (1086)
+.|+++
T Consensus 400 ~~air~ 405 (437)
T 4b4t_L 400 FFAIRD 405 (437)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999875
No 12
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-42 Score=398.28 Aligned_cols=227 Identities=39% Similarity=0.609 Sum_probs=210.0
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc
Q 001395 405 TVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 405 ~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~ 483 (1086)
.+..+|+||+|++++|+.|++.|.+|. .++.|.++|+++++|||||||||||||++|+++|++++++|+.++++++.++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 445678999999999999999999884 3689999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCc---hhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 484 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE---ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~---~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
|+|++++.++.+|+.|+..+||||||||+|+++++|..... ....+++.+|++.||++...++|+||+|||+++.||
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 99999999999999999999999999999999998865432 345678889999999999889999999999999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
||++||||||+.|+| +.|+.++|.+||+.++++++.. .+.+++.+|+.|+||+|+||.++|++|+
T Consensus 335 ~AllRpGRfD~~I~i--------------~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 335 PALLRSGRLDRKIEF--------------PLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp TTTCSTTSEEEEEEC--------------CCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HhHhcCCceeEEEEe--------------CCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999987654 5677999999999999999999999999
Q ss_pred HHHHHH
Q 001395 641 LVCLRR 646 (1086)
Q Consensus 641 ~~a~rr 646 (1086)
+.|+++
T Consensus 400 ~~a~r~ 405 (434)
T 4b4t_M 400 MIALRN 405 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999875
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=395.23 Aligned_cols=260 Identities=30% Similarity=0.508 Sum_probs=223.4
Q ss_pred CCceEEEcCCchhcccccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEE
Q 001395 370 HETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVL 448 (1086)
Q Consensus 370 ~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vL 448 (1086)
+.+.|.+..........++....+....+ .....+..+|+||+|++++|+.|++.|.++. .++.|..+|+.+++|||
T Consensus 170 ~g~~v~l~~~~~~i~~~lp~~~d~~v~~m--~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGIL 247 (467)
T 4b4t_H 170 EGMRVGVDRSKYNIELPLPPRIDPSVTMM--TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGIL 247 (467)
T ss_dssp TTCEECSCTTSCCCCCSSCSSSCCCCCCC--EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEE
T ss_pred CCCEEEEccCcceeeecCCCccCCcccee--eecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceE
Confidence 34566665554444444443333322211 1223445678999999999999999999874 46899999999999999
Q ss_pred EEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCc---h
Q 001395 449 LHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE---E 525 (1086)
Q Consensus 449 L~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~---~ 525 (1086)
||||||||||++|+++|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|.++++|...+. .
T Consensus 248 LyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~ 327 (467)
T 4b4t_H 248 LYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDN 327 (467)
T ss_dssp ECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGG
T ss_pred eeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865432 3
Q ss_pred hHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHH
Q 001395 526 LSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALL 605 (1086)
Q Consensus 526 ~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l 605 (1086)
...+++.+|++.||++...++|+||+|||+++.||+|++||||||++|+| +.|+.++|.+||+.++
T Consensus 328 ~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i--------------~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 328 EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEF--------------SLPDLEGRANIFRIHS 393 (467)
T ss_dssp HHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECC--------------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEe--------------CCcCHHHHHHHHHHHh
Confidence 45678889999999998889999999999999999999999999999999 9999999999999999
Q ss_pred ccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 606 SGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 606 ~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
+++++. .+.+++.||+.|+||+|+||.++|++|++.|+++
T Consensus 394 ~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 394 KSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp TTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 988755 5677999999999999999999999999999876
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-41 Score=388.94 Aligned_cols=231 Identities=35% Similarity=0.581 Sum_probs=212.5
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc
Q 001395 405 TVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 405 ~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~ 483 (1086)
.+...|+||||++++|+.|++.+.++. .++.|..+|+.+++|+|||||||||||++|+++|++++++|+.++++++.++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 344567999999999999999999874 4689999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 484 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
|+|++++.++.+|+.|+...||||||||+|++++.|... ++....+++.+|++.||++....+++||+|||+++.||
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 999999999999999999999999999999999987433 33456789999999999999889999999999999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCC-CCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAA-VPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~-~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
||++||||||+.|+| | .|+.++|.+||+.++++++.. .+.+++.+|..|+||+|+||.++|++|
T Consensus 326 ~AllRpGRfd~~I~~--------------p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 326 PALLRPGRLDRKIEF--------------PSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp HHHHSSSSEEEEEEC--------------CSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhhhcCCcceEEEEc--------------CCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999999999999999 7 799999999999999988754 567899999999999999999999999
Q ss_pred HHHHHHHhccc
Q 001395 640 ALVCLRRYSKI 650 (1086)
Q Consensus 640 ~~~a~rr~~~~ 650 (1086)
++.|+++....
T Consensus 391 ~~~a~r~~~~~ 401 (428)
T 4b4t_K 391 GLRAVRKNRYV 401 (428)
T ss_dssp HHHHHHTTCSS
T ss_pred HHHHHHCCCCC
Confidence 99999875543
No 15
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.4e-42 Score=423.39 Aligned_cols=275 Identities=44% Similarity=0.747 Sum_probs=251.0
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
..+.++|+||+|+++++++|++.+.+|+.+|+.|.++|+.+|+|+|||||||||||++||++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
+|+|++++.++.+|..|+..+||||||||||+|++.|+... .+...+++++|+..|+++....+|+||+|||+++.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 99999999999999999999999999999999999886543 3567899999999999998888999999999999999
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC------
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD------ 1001 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~------ 1001 (1086)
++++||||||+.|+++.|+.++|.+||+.+++++++..++++..||..|+||+|+||.++|++|++.|+++..+
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887531
Q ss_pred ---------CCCCCHHHHHHHHHhhCCCc---------------hhHHHHHHHHHHHHHhccccccc
Q 001395 1002 ---------ASRITMQHLKTAIRHVQPSE---------------IHSYKELSAKFQRLVHSNAEADE 1044 (1086)
Q Consensus 1002 ---------~~~It~~d~~~al~~~~p~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1086)
...|+.+||..|+..++|+. +..+++.++.++..+........
T Consensus 435 ~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~ 501 (806)
T 3cf2_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501 (806)
T ss_dssp CCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSG
T ss_pred cccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHH
Confidence 13488999999999988752 23467777777777766544433
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.3e-40 Score=366.79 Aligned_cols=271 Identities=45% Similarity=0.881 Sum_probs=247.9
Q ss_pred hhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEe
Q 001395 762 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 841 (1086)
Q Consensus 762 ~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~ 841 (1086)
+|+...+.|.++|++|+|++++++.|++.+.+++.+++.|..+++.+++++|||||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCC-CCCCCccHHHHHHHHHHHhccccCCCEEEEEec
Q 001395 842 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920 (1086)
Q Consensus 842 ~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~-~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT 920 (1086)
++++.++|+|+.++.++.+|..|+...|+||||||+|.+...++.. ....+...+++++|+..|++.....+++||+||
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999887543 222345678999999999988777899999999
Q ss_pred CCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 921 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 1000 (1086)
Q Consensus 921 N~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~ 1000 (1086)
|+++.+|++++|+|||++.+++++|+.++|.+|++.++++.++..+++++.++..+.||+|+||+++|++|++.|+++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999987653
Q ss_pred C-----------------------CCCCCHHHHHHHHHhhCCC----chhHHHHHHHHH
Q 001395 1001 D-----------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 1032 (1086)
Q Consensus 1001 ~-----------------------~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~ 1032 (1086)
. ...|+.+||..|++.++|+ +...|++|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 1 1369999999999999987 456788887766
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=348.26 Aligned_cols=253 Identities=45% Similarity=0.800 Sum_probs=217.5
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.|+++|+||+|++++|++|++.+.+|+.+++.++.+++..++|++|+||||||||++|++||++.+.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
+|+|+.++.++.+|..++...|+|+|+||+|.++..|+... .+...+++++++.+|++......++++++||+|+.||
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 99999999999999999989999999999999877654321 1234578899999999988888899999999999999
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc---CCCCCcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHhcC-
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRK---IPCSSDVNIRELACLS--EGCTGADISLICREAAISAIEENLD- 1001 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~---~~l~~d~~l~~La~~t--~g~sgadl~~l~~~A~~~A~~~~~~- 1001 (1086)
++++||||||+.|++++|+.++|.+||+.++++ .++..+++++.+|..+ +||+|+||.++|++|++.|+++...
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 4566789999999874 5999999999999999999987542
Q ss_pred --------CCCCCHHHHHHHHHhhCCCch
Q 001395 1002 --------ASRITMQHLKTAIRHVQPSEI 1022 (1086)
Q Consensus 1002 --------~~~It~~d~~~al~~~~p~~~ 1022 (1086)
...|+++||++|+++++|+..
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCCC-
T ss_pred ccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 236999999999999999743
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=354.23 Aligned_cols=261 Identities=37% Similarity=0.672 Sum_probs=234.7
Q ss_pred hhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-CCcEEEEeCCcc
Q 001395 767 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKGPEL 845 (1086)
Q Consensus 767 ~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-~~~fi~v~~sel 845 (1086)
.+.|+++|+||+|++++|+.|++.+.+|+.+++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4678999999999999999999999999999998874 36778999999999999999999999999 899999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-cCCCEEEEEecCCCC
Q 001395 846 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPD 924 (1086)
Q Consensus 846 ~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-~~~~v~VI~aTN~p~ 924 (1086)
.++|+|++++.++.+|..++...|+||||||+|.+.+.++... .....+++++|+..|++.. ...+++||+|||+++
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999999988775432 3557899999999999875 357899999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC--
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD-- 1001 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~-- 1001 (1086)
.+|++++| ||++.+++++|+.++|.+||+.++++.+.. .+.++..|++.++||+|+||.++|++|++.|+++...
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 999999999999999999999999888764 6788999999999999999999999999999987431
Q ss_pred ---------------------------------------------CCCCCHHHHHHHHHhhCCC----chhHHHHHHHHH
Q 001395 1002 ---------------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 1032 (1086)
Q Consensus 1002 ---------------------------------------------~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~ 1032 (1086)
...|+++||..|++.++|+ +.+.|++|.+.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~ 318 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDF 318 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTT
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 1369999999999999998 345677776554
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.6e-36 Score=359.41 Aligned_cols=348 Identities=38% Similarity=0.623 Sum_probs=276.8
Q ss_pred HHhhhc--CCeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEcCCchhccc
Q 001395 308 AASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVSK 385 (1086)
Q Consensus 308 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~~ 385 (1086)
.|.|.. .+++..|+.+.+......+.|.+....+. ....+++.|.+.+......
T Consensus 135 ~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~t~~~~~~~~~~--- 190 (489)
T 3hu3_A 135 LKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEPIK--- 190 (489)
T ss_dssp HHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESS---------------------SEEEECTTCEEECCSSCBC---
T ss_pred hHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCC---------------------CceEEcCCeEEEEccCccc---
Confidence 355554 37889999999988788888988887775 5678899999886432110
Q ss_pred ccCCCCCChhhhhhhhhhccccccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHH
Q 001395 386 SLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLC 464 (1086)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAral 464 (1086)
... .........|++|+|++++++.|++++..+. .++.|..+|..++.++|||||||||||++|+++
T Consensus 191 --------~~~----~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 191 --------RED----EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp --------HHH----HHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHH
T ss_pred --------ccc----cccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHH
Confidence 000 0011122456899999999999999998763 468889999999999999999999999999999
Q ss_pred HHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccC
Q 001395 465 AHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT 544 (1086)
Q Consensus 465 A~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~ 544 (1086)
|++++.+|+.++|.++.+.+.|+.+..++.+|+.+....|+||||||||.+++++.....+...+++.+|+..|++....
T Consensus 259 a~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp HHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999887777788899999999999998888
Q ss_pred CCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHc
Q 001395 545 DGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT 624 (1086)
Q Consensus 545 ~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t 624 (1086)
.+++||++||+++.++++++|+|||++.+++ +.|+.++|.+||+.+++..+.. .+.+++.++..+
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i--------------~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t 403 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDI--------------GIPDATGRLEILQIHTKNMKLA-DDVDLEQVANET 403 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEEC--------------CCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTC
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEe--------------CCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHc
Confidence 8999999999999999999999999999999 9999999999999999877654 456789999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCccc
Q 001395 625 HGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTS 704 (1086)
Q Consensus 625 ~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1086)
+||+++||..||++|++.|+++...... ++.
T Consensus 404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~---------------------~~~---------------------------- 434 (489)
T 3hu3_A 404 HGHVGADLAALCSEAALQAIRKKMDLID---------------------LED---------------------------- 434 (489)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTTCC---------------------TTC----------------------------
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcccccc---------------------ccc----------------------------
Confidence 9999999999999999999887433210 000
Q ss_pred cccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhH
Q 001395 705 LLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREV 783 (1086)
Q Consensus 705 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~v 783 (1086)
.....+......++.+||..|+..++|+.++++..++|+++|+||||..+.
T Consensus 435 ----------------------------~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 435 ----------------------------ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp ----------------------------SSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred ----------------------------cccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccc
Confidence 000011223467899999999999999999999999999999999998654
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.9e-37 Score=347.81 Aligned_cols=265 Identities=38% Similarity=0.712 Sum_probs=236.0
Q ss_pred hhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc
Q 001395 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 844 (1086)
Q Consensus 765 ~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se 844 (1086)
...+.|+++|++|+|++.+++.|++.+.+++.+++.+.. +..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 445789999999999999999999999999999988876 5677889999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-cCCCEEEEEecCCC
Q 001395 845 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRP 923 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-~~~~v~VI~aTN~p 923 (1086)
+.++|+|+.++.++.+|..++...|+||||||||.|...++.. ......+++++++..|++.. ...+++||+|||++
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998876443 23567899999999999884 56689999999999
Q ss_pred CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCC
Q 001395 924 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 1002 (1086)
Q Consensus 924 ~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~ 1002 (1086)
+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..|+..++||+|+||+++|++|++.|+++....
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999988765 67789999999999999999999999999999875321
Q ss_pred -----------------------------------------CCCCHHHHHHHHHhhCCC----chhHHHHHHHHHHH
Q 001395 1003 -----------------------------------------SRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 1034 (1086)
Q Consensus 1003 -----------------------------------------~~It~~d~~~al~~~~p~----~~~~~~~~~~~~~~ 1034 (1086)
..|+++||.+|++.++|+ +...|++|.+.|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 459999999999999997 46778888877753
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.9e-36 Score=346.21 Aligned_cols=265 Identities=37% Similarity=0.693 Sum_probs=225.7
Q ss_pred hhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCC
Q 001395 764 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 843 (1086)
Q Consensus 764 e~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~s 843 (1086)
.+..+.++++|++|+|++.+++.|++.+.+++.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 3445678999999999999999999999999999998886 567889999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc-CCCEEEEEecCC
Q 001395 844 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-RVNVTVIAATNR 922 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~-~~~v~VI~aTN~ 922 (1086)
++.++|+|+.++.++.+|..++...|+||||||+|.+.+.|+.. ......+++++|+..|++... ..+++||+|||+
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 99999999999999999999999999999999999998776543 235678899999999998753 568999999999
Q ss_pred CCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC
Q 001395 923 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001 (1086)
Q Consensus 923 p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~ 1001 (1086)
++.+|++++| ||++.+++++|+.++|.+||+.++++.+.. .+.+++.|++.++||+|+||+++|++|++.|+++...
T Consensus 197 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 197 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp GGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999988754 6788999999999999999999999999999987421
Q ss_pred -----------------------------------------CCCCCHHHHHHHHHhhCCC----chhHHHHHHHHHH
Q 001395 1002 -----------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 1033 (1086)
Q Consensus 1002 -----------------------------------------~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~~ 1033 (1086)
...|+++||..|++.++|+ +...|++|.+.|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~ 351 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 1359999999999999998 4566777776663
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=2.2e-34 Score=361.66 Aligned_cols=441 Identities=19% Similarity=0.263 Sum_probs=306.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++++|.+++++.+.+++.. ..+.++||+||||||||++|+++|+.+ +..++.++.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 3568999999999888776532 256789999999999999999999986 667888888
Q ss_pred cccc--cccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
..+. ..+.|+.+..++.+|+.+....++||||||+|.+.+.+...... .. ..+.|..+...+++.+|++||.
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~----~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VD----AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HH----HHHHHSSCSSSCCCEEEEEECH
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HH----HHHHHHHHHhCCCeEEEEEeCc
Confidence 8777 46889999999999999988888999999999998765432222 22 2344444555678999999986
Q ss_pred CC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc----CccccchHHHHHHHHHcCC
Q 001395 556 PD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 556 ~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~----~~~~l~d~~l~~La~~t~G 626 (1086)
++ .+|+++.| ||+ .+.+ +.|+.+++.+|++.+... ....+++..+..++..+.+
T Consensus 325 ~~~~~~~~~d~aL~~--Rf~-~i~v--------------~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~ 387 (758)
T 1r6b_X 325 QEFSNIFEKDRALAR--RFQ-KIDI--------------TEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_dssp HHHHCCCCCTTSSGG--GEE-EEEC--------------CCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHh--Cce-EEEc--------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence 43 57899998 997 5777 999999999999987765 2344667778877777655
Q ss_pred -----CcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCC
Q 001395 627 -----FVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDL 701 (1086)
Q Consensus 627 -----fsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1086)
+.+..+..++++|+..+... .... .
T Consensus 388 ~i~~~~lp~~~i~lld~a~~~~~~~--~~~~---------------~--------------------------------- 417 (758)
T 1r6b_X 388 YINDRHLPDKAIDVIDEAGARARLM--PVSK---------------R--------------------------------- 417 (758)
T ss_dssp HCTTSCTTHHHHHHHHHHHHHHHHS--SSCC---------------C---------------------------------
T ss_pred hcccccCchHHHHHHHHHHHHHhcc--cccc---------------c---------------------------------
Confidence 45567777888776433110 0000 0
Q ss_pred ccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCch-------hhhhhhhhcCCccc
Q 001395 702 PTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPS-------AMREVILEVPKVKW 774 (1086)
Q Consensus 702 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps-------~~re~~~e~p~v~~ 774 (1086)
...++.+|+..++..+... ...+........-.
T Consensus 418 ----------------------------------------~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~ 457 (758)
T 1r6b_X 418 ----------------------------------------KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_dssp ----------------------------------------CCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHT
T ss_pred ----------------------------------------CCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHH
Confidence 0011122222221111100 00000000011123
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCC----CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc--
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR----PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK-- 848 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~----~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~-- 848 (1086)
.+++|++++++.+...+... +.|+. +..++||+||||||||++|+++|..++.+|+.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 56899999999988877532 22332 23359999999999999999999999999999999887543
Q ss_pred ----------cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc--------
Q 001395 849 ----------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-------- 910 (1086)
Q Consensus 849 ----------~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~-------- 910 (1086)
|+|..+. ..+...++...++|||||||+.+ +..+++.|++.|+...-
T Consensus 530 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp CSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTEEE
T ss_pred HhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCCEE
Confidence 4443322 22445555667799999999954 67899999999985321
Q ss_pred -CCCEEEEEecCCCC-------------------------CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC---
Q 001395 911 -RVNVTVIAATNRPD-------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--- 961 (1086)
Q Consensus 911 -~~~v~VI~aTN~p~-------------------------~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~--- 961 (1086)
..+++||+|||.+. .++|++++ ||+.+|.|++|+.+++..|++.++++.
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 24688999999854 57888988 999999999999999999999888632
Q ss_pred ----C--CC-CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 001395 962 ----P--CS-SDVNIRELACLS--EGCTGADISLICREAAISAIEE 998 (1086)
Q Consensus 962 ----~--l~-~d~~l~~La~~t--~g~sgadl~~l~~~A~~~A~~~ 998 (1086)
. +. .+..++.|+... ..+.+|++++++++++..++.+
T Consensus 673 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 673 LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 1 11 233356666544 2456789999998887765544
No 23
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=5.2e-34 Score=358.11 Aligned_cols=481 Identities=20% Similarity=0.265 Sum_probs=299.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++|+|.+++++.+.+++... ...++||+||||||||++|+++|+.+ +..++.+++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCchHHHHHHHHHHhCC------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 35689999999999988876432 45679999999999999999999997 788888887
Q ss_pred cccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 478 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 478 s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
..+|.|+.+..++.+|+.+....|+|||||. .....+.|+..| ..+.+.+|++||..+
T Consensus 245 ---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~---------------~~~~~~~L~~~l----~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA---------------AIDASNILKPSL----ARGELQCIGATTLDE 302 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEECC-----------------------CCCT----TSSSCEEEEECCTTT
T ss_pred ---cccccchHHHHHHHHHHHHHhcCCEEEEEcC---------------chhHHHHHHHHH----hcCCEEEEeCCChHH
Confidence 5668899999999999999988899999990 112223343333 467899999999988
Q ss_pred -----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc----CccccchHHHHHHHHHcC---
Q 001395 558 -----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATH--- 625 (1086)
Q Consensus 558 -----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~----~~~~l~d~~l~~La~~t~--- 625 (1086)
.++++++| ||. .|.| +.|+.+++.+||+.+... .+..+++..+..++..++
T Consensus 303 ~~~~~~~d~al~r--Rf~-~i~v--------------~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 303 YRKYIEKDAALER--RFQ-PIQV--------------DQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp THHHHTTCSHHHH--SEE-EEEC--------------CCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred HHHHhhccHHHHh--hCc-EEEe--------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 79999999 994 5888 999999999999987766 344567888888877654
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCCcc
Q 001395 626 --GFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPT 703 (1086)
Q Consensus 626 --GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1086)
++.+.....++++|+..+..+........+.+...-..+..+. .......+... ..
T Consensus 366 ~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~--~~~~~~~~~~~-~~------------------- 423 (758)
T 3pxi_A 366 SDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEK--DAAVQSQEFEK-AA------------------- 423 (758)
T ss_dssp CCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHH--HHHHHHCCSHH-HH-------------------
T ss_pred ccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHH--HHHHhCcCHHH-HH-------------------
Confidence 5567788888888876654432211000000000000000000 00000000000 00
Q ss_pred ccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhh---h----hhhhcCCccccc
Q 001395 704 SLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMR---E----VILEVPKVKWED 776 (1086)
Q Consensus 704 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~r---e----~~~e~p~v~~~d 776 (1086)
.+......+...+..+...+. .........++.+++...+.....-... . ........-.++
T Consensus 424 ~l~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~ 492 (758)
T 3pxi_A 424 SLRDTEQRLREQVEDTKKSWK-----------EKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSR 492 (758)
T ss_dssp HHHHHHHHHHHHHHHHHSGGG-----------HHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCc
Confidence 000000000000011111100 0011122345666666655544321000 0 001111122467
Q ss_pred cccchhHHHHHHHHHhcchhcHHHHHhhCCC---CCC-CcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccccc
Q 001395 777 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTR---PPT-GILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW 849 (1086)
Q Consensus 777 i~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~---~~~-gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~ 849 (1086)
++|++.+++.+.+.+.... .+.. .|. ++||+||||||||++|+++|..+ +.+|+.++++++...+
T Consensus 493 viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH 564 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC
T ss_pred CcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc
Confidence 8999999999998887421 1222 222 59999999999999999999986 7899999999988776
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEEEec
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAAT 920 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI~aT 920 (1086)
... ...++..++...++||||||||.+ +..+++.|++.|+... ...+++||+||
T Consensus 565 ~~~----~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 565 STS----GGQLTEKVRRKPYSVVLLDAIEKA-------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp CCC-------CHHHHHHCSSSEEEEECGGGS-------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccc----cchhhHHHHhCCCeEEEEeCcccc-------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 554 222344455566789999999954 6789999999998632 23478999999
Q ss_pred CCCCC------------CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHHHHHc--
Q 001395 921 NRPDK------------IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIRELACLS-- 976 (1086)
Q Consensus 921 N~p~~------------lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~-------~l~---~d~~l~~La~~t-- 976 (1086)
|.+.. +.|+++. ||+.+|.|++|+.+++.+|++.++..+ ... .+..++.|+...
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCC
Confidence 97654 7888888 999999999999999999999887542 111 223356666543
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Q 001395 977 EGCTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 977 ~g~sgadl~~l~~~A~~~A~~~~ 999 (1086)
..+..|+|+++++++...++.+.
T Consensus 706 ~~~~~R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp TTTTTTTHHHHHHHHTHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHH
Confidence 24557899999998877666543
No 24
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.3e-34 Score=340.41 Aligned_cols=248 Identities=44% Similarity=0.745 Sum_probs=223.4
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
.+.++|+||+|++++++++++.+.+ +.+++.|.+++...|+|+||+||||||||++|+++|++.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4578999999999999999999886 677889999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
|+|.....++.+|..|+...||||||||||.+...|+... .......+++++|+.+|++.....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 9999999999999999999999999999999988765321 122334578999999999887777999999999999999
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 1007 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~ 1007 (1086)
++++|||||++.|+|++|+.++|.+|++.++++.++..++++..++..+.||+|+||+++|++|+..|.++. ...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--RDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--CCeecH
Confidence 999999999999999999999999999999999998888999999999999999999999999999998764 457999
Q ss_pred HHHHHHHHhhCC
Q 001395 1008 QHLKTAIRHVQP 1019 (1086)
Q Consensus 1008 ~d~~~al~~~~p 1019 (1086)
+||..++.++.+
T Consensus 247 ~dl~~al~~v~~ 258 (476)
T 2ce7_A 247 KDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3e-35 Score=347.39 Aligned_cols=263 Identities=37% Similarity=0.667 Sum_probs=224.0
Q ss_pred hhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-CCcEEEEeCC
Q 001395 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKGP 843 (1086)
Q Consensus 765 ~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-~~~fi~v~~s 843 (1086)
+..+.|+++|+||+|++.+++.|++.+.+|+.+++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 345678999999999999999999999999999888764 35677999999999999999999999999 8999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-cCCCEEEEEecCC
Q 001395 844 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNR 922 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-~~~~v~VI~aTN~ 922 (1086)
++.++|+|++++.++.+|..++...|+||||||||.+.+.+... ......+++++|+..|++.. ...+++||+|||+
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999999999999999999999998876543 23567899999999999875 3578999999999
Q ss_pred CCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC
Q 001395 923 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD 1001 (1086)
Q Consensus 923 p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~ 1001 (1086)
++.+|++++| ||++.+++++|+.++|..||+.++++.+.. .+.++..|+..++||+|+||.++|++|++.|+++...
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887753 6788999999999999999999999999999987421
Q ss_pred -----------------------------------------------CCCCCHHHHHHHHHhhCCC----chhHHHHHHH
Q 001395 1002 -----------------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSA 1030 (1086)
Q Consensus 1002 -----------------------------------------------~~~It~~d~~~al~~~~p~----~~~~~~~~~~ 1030 (1086)
...|+++||..|+..++|+ +...|++|.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~ 438 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 1368999999999999998 3456666654
Q ss_pred HH
Q 001395 1031 KF 1032 (1086)
Q Consensus 1031 ~~ 1032 (1086)
.|
T Consensus 439 ~~ 440 (444)
T 2zan_A 439 DF 440 (444)
T ss_dssp SC
T ss_pred HH
Confidence 33
No 26
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.8e-33 Score=306.14 Aligned_cols=248 Identities=39% Similarity=0.699 Sum_probs=219.5
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.+..+|++++|++++++++.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|++++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 35678999999999999999998876 67777888888999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
.+.|+..+.++.+|..+....|+++||||+|.+...++... .+.....+.+++++..|++.....+++||++||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 99999999999999999999999999999999987664321 11223347889999999988777889999999999999
Q ss_pred ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001395 927 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 927 D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It 1006 (1086)
|++++|+|||++.+++++|+.++|.+|++.++++.++..+.++..++..+.||+++||+++|++|+..|.++. ...|+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~i~ 241 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVS 241 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCccc
Confidence 9999999999999999999999999999999999988888899999999999999999999999999998875 46799
Q ss_pred HHHHHHHHHhhC
Q 001395 1007 MQHLKTAIRHVQ 1018 (1086)
Q Consensus 1007 ~~d~~~al~~~~ 1018 (1086)
.+||..|+..+.
T Consensus 242 ~~~~~~a~~~~~ 253 (257)
T 1lv7_A 242 MVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.9e-33 Score=311.36 Aligned_cols=249 Identities=46% Similarity=0.824 Sum_probs=227.0
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.|.++|++++|++.++++|.+.+.+++.+++.+..++..++.++||+||||||||++|+++|++++.+++.+++.++.+
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
.+.|+....++.+|..++...|+||||||+|.+...+.....+ .....+.+..++..+++.....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999998776543221 122346667777778777677789999999999999
Q ss_pred ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001395 927 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 927 D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It 1006 (1086)
|++++|++||+..++++.|+.++|.+|++.+++...+..+.++..++..+.||+++||+.+|++|...|+++. ...|+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~--~~~I~ 247 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL--RDYVT 247 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCcCC
Confidence 9999999999999999999999999999999999888888899999999999999999999999999998876 45799
Q ss_pred HHHHHHHHHhhC
Q 001395 1007 MQHLKTAIRHVQ 1018 (1086)
Q Consensus 1007 ~~d~~~al~~~~ 1018 (1086)
.+|+.+++..+.
T Consensus 248 ~~d~~~al~~~~ 259 (285)
T 3h4m_A 248 MDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 28
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.3e-33 Score=336.18 Aligned_cols=249 Identities=47% Similarity=0.786 Sum_probs=232.1
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
+.++|++|+|++.++++|++.+.+++.+++.|..++..++.++|||||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChh
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 929 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~a 929 (1086)
.|+.+..++.+|..|....|+||||||||.|.+.+.... .+...+++++|+..|++.....+++||+|||+++.+|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc--chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 999999999999999999999999999999988765432 356679999999999988888899999999999999999
Q ss_pred hhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCC-------
Q 001395 930 LLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA------- 1002 (1086)
Q Consensus 930 LlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~------- 1002 (1086)
+.|+|||++.++|+.|+.++|.+||+.+++.+++..+.++..++..+.||+++||.++|++|++.|+++..+.
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~ 436 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSS
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 9999999999999999999999999999999999889999999999999999999999999999999886431
Q ss_pred --------CCCCHHHHHHHHHhhCCC
Q 001395 1003 --------SRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1003 --------~~It~~d~~~al~~~~p~ 1020 (1086)
..|+++||..|++.++|+
T Consensus 437 ~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 437 IDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp CCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred cchhhcccCcCCHHHHHHHHHhCCch
Confidence 248999999999988775
No 29
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1.6e-32 Score=348.66 Aligned_cols=512 Identities=21% Similarity=0.279 Sum_probs=303.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++++|.++++..+.+++.. ....+++|+||||||||++|+++|+.+ +.+++.+++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 4568999999988888876633 235679999999999999999999987 889999999
Q ss_pred cccc--cccchhhHHHHHHHHHHhhcC-CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
..+. ..+.|+.+..++.+|+.+... .|+||||||+|.+.+.+...+ ...+...|..++ ..+++.+|++||
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l----~~~~i~~I~at~ 307 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPAL----ARGELRLIGATT 307 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH----HTTCCCEEEEEC
T ss_pred HHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHH----hCCCeEEEEecC
Confidence 9987 568899999999999998765 689999999999986543322 123334444444 346788999998
Q ss_pred CCC----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC----ccccchHHHHHHHHHc--
Q 001395 555 RPD----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMAT-- 624 (1086)
Q Consensus 555 ~~d----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~----~~~l~d~~l~~La~~t-- 624 (1086)
.++ .++++++| ||+. +.+ +.|+.+++.+||+.++... +..+.+..+..++..+
T Consensus 308 ~~~~~~~~~d~aL~r--Rf~~-i~l--------------~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 308 LDEYREIEKDPALER--RFQP-VYV--------------DEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp HHHHHHHTTCTTTCS--CCCC-EEE--------------CCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHh--CCce-EEe--------------CCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 765 47899999 9985 777 9999999999999877643 4456778888887765
Q ss_pred ---CCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCCCC
Q 001395 625 ---HGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDL 701 (1086)
Q Consensus 625 ---~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1086)
..|.+.....++++|+..+..+........+.+.. ........ ...+.... +. .....+
T Consensus 371 ~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~--~~~~~~~~-~~~~~~~~-------------~~--~~~~~~ 432 (854)
T 1qvr_A 371 YITERRLPDKAIDLIDEAAARLRMALESAPEEIDALER--KKLQLEIE-REALKKEK-------------DP--DSQERL 432 (854)
T ss_dssp HCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH--HHHHHHHH-HHHHSSCS-------------SH--HHHSCT
T ss_pred hcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHH--HHHHHHHH-HHHHHhcc-------------cc--ccHHHH
Confidence 45667888888888876554321110000000000 00000000 00000000 00 000000
Q ss_pred ccccccCCcccccchHHHHhhccCCC--------------------CCC-CCCCc------cc-----------------
Q 001395 702 PTSLLSSSLPLRGTVSEIADNFHNGV--------------------SDS-SGGMF------MS----------------- 737 (1086)
Q Consensus 702 ~~~l~~~~~~~~~~~~~i~~~~~~~~--------------------~~~-~~~~~------~~----------------- 737 (1086)
. .+......++..+..+...+.... ... ..+.. .+
T Consensus 433 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (854)
T 1qvr_A 433 K-AIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKL 511 (854)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 0 000000000000000000000000 000 00000 00
Q ss_pred --cccccccccHHHHHHHHHhhCchh-------hhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCC-
Q 001395 738 --EKGCALKLELVDFEKARMKVRPSA-------MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR- 807 (1086)
Q Consensus 738 --~~~~~~~vt~~Df~~Al~~~~ps~-------~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~- 807 (1086)
.+.-...++.+++...+.....-. ..+........-|++++|++.+++.+...+... +.|..
T Consensus 512 ~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--------~~g~~~ 583 (854)
T 1qvr_A 512 RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--------RAGLKD 583 (854)
T ss_dssp SSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--------GGGCSC
T ss_pred cccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--------hcccCC
Confidence 000022355666666555443210 011111222334678999999999998888642 11221
Q ss_pred ---CCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc------------cccccHHHHHHHHHHHHhcCC
Q 001395 808 ---PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVGESEKAVRSLFAKARANAP 869 (1086)
Q Consensus 808 ---~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~------------~vGese~~ir~lf~~A~~~~p 869 (1086)
+..++||+||||||||++|++|+..+ +.+|+.++++++... |+|..+ ...+....+...+
T Consensus 584 ~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~ 661 (854)
T 1qvr_A 584 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPY 661 (854)
T ss_dssp SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCC
Confidence 22469999999999999999999988 789999999886543 233322 1234444555667
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCEEEEEecCCC-----------------
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRP----------------- 923 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v~VI~aTN~p----------------- 923 (1086)
+|||||||+.+ +..+++.|++.|+... .-.+++||+|||..
T Consensus 662 ~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l 728 (854)
T 1qvr_A 662 SVILFDEIEKA-------------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERI 728 (854)
T ss_dssp EEEEESSGGGS-------------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHH
T ss_pred eEEEEeccccc-------------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHH
Confidence 89999999954 6789999999998542 12378899999972
Q ss_pred ---------CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHHHHHcC--CCcHH
Q 001395 924 ---------DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIRELACLSE--GCTGA 982 (1086)
Q Consensus 924 ---------~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~-------~l~---~d~~l~~La~~t~--g~sga 982 (1086)
..+.|+|+. ||+.++.|.+|+.+++..|++.+++.+ ... .+..++.|+...- .++.|
T Consensus 729 ~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R 806 (854)
T 1qvr_A 729 RDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGAR 806 (854)
T ss_dssp HHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTS
T ss_pred HHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChH
Confidence 246778887 999999999999999999999887632 111 2334666777655 56789
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001395 983 DISLICREAAISAIEEN 999 (1086)
Q Consensus 983 dl~~l~~~A~~~A~~~~ 999 (1086)
+|+++++++...++.+.
T Consensus 807 ~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 807 PLRRVIQRELETPLAQK 823 (854)
T ss_dssp THHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888776553
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=310.96 Aligned_cols=225 Identities=31% Similarity=0.564 Sum_probs=205.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEcccccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-g~~~i~I~~s~l~s~~~ 485 (1086)
..|++|+|++++++.|++.+.++.. ++.|. -+..+++++|||||||||||++|+++|+++ +.+|+.++++++.+.|.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~-~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWL 87 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC-TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh-CCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhh
Confidence 4578999999999999999988733 34444 346788999999999999999999999999 88999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-cCCCeeEEeccCCCCCCCcccc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-~~~~viVIatTN~~d~idpaL~ 564 (1086)
|++++.++.+|+.+....|+||||||+|.+++.+.....+...+++.+|+..|+++. ...+++||++||+++.+|++++
T Consensus 88 g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~ 167 (322)
T 1xwi_A 88 GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIR 167 (322)
T ss_dssp CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHH
Confidence 999999999999999999999999999999998877666778899999999999985 3578999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
| ||++.+++ +.|+.++|.+|++.+++..+..+++.+++.+++.++||+|+||.++|++|++.|+
T Consensus 168 r--Rf~~~i~i--------------~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~ 231 (322)
T 1xwi_A 168 R--RFEKRIYI--------------PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV 231 (322)
T ss_dssp H--TCCEEEEC--------------CCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHH
T ss_pred h--hcCeEEEe--------------CCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9 99999999 9999999999999999988877789999999999999999999999999999999
Q ss_pred HHhcc
Q 001395 645 RRYSK 649 (1086)
Q Consensus 645 rr~~~ 649 (1086)
++...
T Consensus 232 r~~~~ 236 (322)
T 1xwi_A 232 RKVQS 236 (322)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98653
No 31
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=308.29 Aligned_cols=226 Identities=41% Similarity=0.653 Sum_probs=192.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 408 QDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
..|++|+|++++++.|++.+..+. .++.+..+++..++|++|+||||||||||++++|++++..++.+++.++.+.+.|
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~ 86 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 86 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence 457899999999999999887763 3588899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCC
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRP 566 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~ 566 (1086)
+.++.++.+|+.+....|+|+|+||+|.+++.+.........++..+++..|++......++++++||+|+.+|++++||
T Consensus 87 ~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~ 166 (274)
T 2x8a_A 87 ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRP 166 (274)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHST
T ss_pred HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCc
Confidence 99999999999998889999999999999876543222233467889999999988888899999999999999999999
Q ss_pred CCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc--ccchHHHHHHHHH--cCCCcHHHHHHHHHHHHHH
Q 001395 567 GRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH--SLLDSEVEYLSMA--THGFVGADLAALCNEAALV 642 (1086)
Q Consensus 567 GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~--~l~d~~l~~La~~--t~GfsgaDL~~L~~eA~~~ 642 (1086)
||||+.|++ +.|+.++|.+||+.+++.... ...+.+++.++.. |+||+|+||.++|++|++.
T Consensus 167 gRfd~~i~~--------------~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~ 232 (274)
T 2x8a_A 167 GRLDKTLFV--------------GLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232 (274)
T ss_dssp TSSCEEEEC--------------CSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHH
T ss_pred ccCCeEEEe--------------CCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999865321 2246778999986 4599999999999999999
Q ss_pred HHHHh
Q 001395 643 CLRRY 647 (1086)
Q Consensus 643 a~rr~ 647 (1086)
|+++.
T Consensus 233 a~~~~ 237 (274)
T 2x8a_A 233 ALRQE 237 (274)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-32 Score=307.37 Aligned_cols=267 Identities=39% Similarity=0.642 Sum_probs=225.9
Q ss_pred hhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeC
Q 001395 763 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 842 (1086)
Q Consensus 763 re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~ 842 (1086)
++...+.++++|++++|++.+++.+++.+.++..+++.+..++ .+++++||+||||||||++|+++|++++.+|+.+++
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 3444456889999999999999999999999988888877665 467889999999999999999999999999999999
Q ss_pred CccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccC---CCEEEEEe
Q 001395 843 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR---VNVTVIAA 919 (1086)
Q Consensus 843 sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~---~~v~VI~a 919 (1086)
+++.+.+.|+.+..++.+|..+....|+||||||+|.+...+.... .....+++++|+..+++.... .+++||++
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 9999999999999999999999999999999999999987664322 245678899999999977542 57999999
Q ss_pred cCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 920 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 998 (1086)
Q Consensus 920 TN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~ 998 (1086)
||+++.+|+++++ ||+..+++++|+.++|..|++.++++.+.. .+.++..++..+.||+++||+.+|++|++.++++
T Consensus 166 tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 166 TNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp ESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred cCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999876543 4567899999999999999999999999999987
Q ss_pred hc----------CCCCCCHHHHHHHHHhhCCC----chhHHHHHHHHHHH
Q 001395 999 NL----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 1034 (1086)
Q Consensus 999 ~~----------~~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~~~ 1034 (1086)
.. ....|+.+||..|+..++|+ ....|++|.+.|..
T Consensus 244 ~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 244 LNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp CC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 52 23579999999999999987 34566666655543
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=315.12 Aligned_cols=264 Identities=38% Similarity=0.692 Sum_probs=227.3
Q ss_pred hhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCC
Q 001395 764 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 843 (1086)
Q Consensus 764 e~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~s 843 (1086)
+.....+.++|++++|++.+++.|++.+.+++.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 334456889999999999999999999999998888777654 6788999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--cCCCEEEEEecC
Q 001395 844 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATN 921 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--~~~~v~VI~aTN 921 (1086)
++.++|.|+.++.++.+|..++...|+||||||||.|...+.... .....+++++|+..|++.. ...+++||+|||
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--HESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--chHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 999999999999999999999999999999999999987664322 2456788999999999764 346899999999
Q ss_pred CCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 922 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 1000 (1086)
Q Consensus 922 ~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~ 1000 (1086)
+++.+|++++| ||+..++++.|+.++|.++++.+++..+.. .+.++..++..++||+++||+.+|++|++.++++..
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 999999999999999999999999876543 466789999999999999999999999999998642
Q ss_pred ----------CCCCCCHHHHHHHHHhhCCC----chhHHHHHHHHH
Q 001395 1001 ----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 1032 (1086)
Q Consensus 1001 ----------~~~~It~~d~~~al~~~~p~----~~~~~~~~~~~~ 1032 (1086)
....|+.+||..|+..++|+ +.+.|++|.+.|
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~ 353 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHH
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 23579999999999999885 456777776654
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=9.4e-33 Score=301.32 Aligned_cols=248 Identities=40% Similarity=0.673 Sum_probs=199.3
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
|+++|++++|++.+++.+++.+.+ +.+++.+..+|...++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 468999999999999999999887 6777888888999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCC--CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG--VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~--~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
.|.....++.+|..+....|+||||||+|.+...+.....+ .......+++++..+++.....+++||++||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999998766432111 1223467788999998876677899999999999999
Q ss_pred hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001395 928 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN--IRELACLSEGCTGADISLICREAAISAIEENLDASRI 1005 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~--l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~I 1005 (1086)
++++|+|||++.+++++|+.++|.+|++.++++.++..+.+ +..++..+.||+++||+++|++|+..|.++. ...|
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~--~~~i 237 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG--HTSV 237 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------C
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCCC
Confidence 99999999999999999999999999999999887765444 4789999999999999999999999998764 4579
Q ss_pred CHHHHHHHHHhhCCC
Q 001395 1006 TMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1006 t~~d~~~al~~~~p~ 1020 (1086)
+.+||..++.++.+.
T Consensus 238 ~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 238 HTLNFEYAVERVLAG 252 (262)
T ss_dssp CBCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccC
Confidence 999999998876543
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=7.7e-32 Score=305.18 Aligned_cols=227 Identities=32% Similarity=0.558 Sum_probs=202.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...|++|+|++.+++.|++++..+.. ++.+.. +..+++++|||||||||||++|+++|++++.+|+.++++++.+.+.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTG
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhccc
Confidence 34578999999999999999988743 344443 6678899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-cCCCeeEEeccCCCCCCCcccc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-~~~~viVIatTN~~d~idpaL~ 564 (1086)
|+.+..++.+|+.+....|+||||||+|.+.+.+.....+...++..+|+..|+++. ...+++||++||+++.+|++++
T Consensus 93 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~ 172 (322)
T 3eie_A 93 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172 (322)
T ss_dssp GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHH
Confidence 999999999999999999999999999999988766556667889999999999884 5578999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
| ||++.+++ +.|+.++|.+|++.+++..+..+++.+++.++..++||+++||.++|++|.+.|+
T Consensus 173 ~--Rf~~~i~~--------------~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~ 236 (322)
T 3eie_A 173 R--RFERRIYI--------------PLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 236 (322)
T ss_dssp H--HCCEEEEC--------------CCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHH
T ss_pred c--ccCeEEEe--------------CCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9 99999999 9999999999999999988877889999999999999999999999999999999
Q ss_pred HHhccc
Q 001395 645 RRYSKI 650 (1086)
Q Consensus 645 rr~~~~ 650 (1086)
++....
T Consensus 237 r~~~~~ 242 (322)
T 3eie_A 237 RKIQSA 242 (322)
T ss_dssp HHHHHC
T ss_pred HHHhhh
Confidence 987543
No 36
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.98 E-value=1.9e-32 Score=325.70 Aligned_cols=248 Identities=43% Similarity=0.719 Sum_probs=223.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
+.++|+|++|++++++++++.+.+ +.++..+..++...++|++|+||||||||+||++||++++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678999999999999999999876 5677888899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCCh
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 928 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~ 928 (1086)
+|.....++.+|+.++...|||+||||||.+...++... .......+.+++|+.+|++......++||++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 999999999999999888899999999999987664321 1122345788999999998877778999999999999999
Q ss_pred hhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 001395 929 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 1008 (1086)
Q Consensus 929 aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~ 1008 (1086)
+++|||||++.|+|++|+.++|.+||+.++++.++..++++..+|..+.||+|+||+++|++|+..|.++. ...|+++
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--~~~It~~ 262 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKITMK 262 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC--CSSCCSH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccCHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999887654 4579999
Q ss_pred HHHHHHHhhCCC
Q 001395 1009 HLKTAIRHVQPS 1020 (1086)
Q Consensus 1009 d~~~al~~~~p~ 1020 (1086)
||..++.++.+.
T Consensus 263 dl~~al~~v~~~ 274 (499)
T 2dhr_A 263 DLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcc
Confidence 999999987653
No 37
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.98 E-value=1.1e-31 Score=293.03 Aligned_cols=247 Identities=44% Similarity=0.736 Sum_probs=215.9
Q ss_pred hhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc
Q 001395 765 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 844 (1086)
Q Consensus 765 ~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se 844 (1086)
+..+.|.++|++++|+++++.++++.+.+ +.++..+..+++..++|++|+||||||||++++++|+..+.+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 34567889999999999999999998776 56778899999999999999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 845 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
+...+.+...+.++.+|+.+....|+++|+||+|.+...+.... .......+.+++++.+|++......++++++||+|
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p 164 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 164 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCc
Confidence 88888888888899999999888899999999999976654211 11123457788999999988777789999999999
Q ss_pred CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 001395 924 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 1003 (1086)
Q Consensus 924 ~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~ 1003 (1086)
+.+|++++|+|||++.++++.|+.++|.+||+.++++.++..+.++..++..+.||+|+||+++|++|+..|.++. ..
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~--~~ 242 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 242 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CS
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--CC
Confidence 9999999999999999999999999999999999998888888999999999999999999999999999998764 45
Q ss_pred CCCHHHHHHHH
Q 001395 1004 RITMQHLKTAI 1014 (1086)
Q Consensus 1004 ~It~~d~~~al 1014 (1086)
.|+.+||++++
T Consensus 243 ~I~~~dl~~a~ 253 (254)
T 1ixz_A 243 KITMKDLEEAA 253 (254)
T ss_dssp SBCHHHHHHHT
T ss_pred CcCHHHHHHHh
Confidence 79999999875
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=310.20 Aligned_cols=271 Identities=35% Similarity=0.594 Sum_probs=221.8
Q ss_pred hCchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc
Q 001395 757 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 836 (1086)
Q Consensus 757 ~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~ 836 (1086)
.....+++.+...+.++|++|+|++.+++.|.+.+.++..+++.+..++ .+++++|||||||||||++|+++|.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 3344455556667889999999999999999999999988888877766 457889999999999999999999999999
Q ss_pred EEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc--CCCE
Q 001395 837 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ--RVNV 914 (1086)
Q Consensus 837 fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~--~~~v 914 (1086)
|+.+++.++.+.|+|+.+..++.+|..++...|+||||||||.|+..+... ......+++++|+..|++... ..++
T Consensus 176 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 176 FFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp EEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred EEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCE
Confidence 999999999999999999999999999999999999999999998766432 224578999999999997754 4679
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 915 TVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAI 993 (1086)
Q Consensus 915 ~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~ 993 (1086)
+||+|||+++.+|++++| ||+.+++|+.|+.++|.+||+.++...+.. .+.++..|+..+.||++++|..+|++|+.
T Consensus 254 ~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~ 331 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAAL 331 (389)
T ss_dssp EEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred EEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999876543 45578999999999999999999999999
Q ss_pred HHHHHhc----------CCCCCCHHHHHHHHHhhCCCc----hhHHHHHHHHH
Q 001395 994 SAIEENL----------DASRITMQHLKTAIRHVQPSE----IHSYKELSAKF 1032 (1086)
Q Consensus 994 ~A~~~~~----------~~~~It~~d~~~al~~~~p~~----~~~~~~~~~~~ 1032 (1086)
.++++.. ....|+.+||..++..+.++. .+.|++|.+.|
T Consensus 332 ~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~ 384 (389)
T 3vfd_A 332 GPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDF 384 (389)
T ss_dssp HHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9998732 235799999999999998873 44555555544
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=6.4e-31 Score=301.82 Aligned_cols=226 Identities=32% Similarity=0.567 Sum_probs=197.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...|++|+|++.+++.|++.+..+. .++.+.. +..+++++|||||||||||++|+++|++++.+|+.++++++.+.+.
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~ 125 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 125 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC-
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc
Confidence 3567899999999999999998773 3455554 6678899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc-CCCeeEEeccCCCCCCCcccc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~-~~~viVIatTN~~d~idpaL~ 564 (1086)
|+.+..++.+|+.+....|+||||||+|.+.+.+.....+...++..+|+..|+++.. ..+++||++||+++.++++++
T Consensus 126 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 126 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp --CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHH
Confidence 9999999999999999999999999999999887666666778899999999998754 568999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
| ||++.+++ +.|+.++|.+||+.+++..+..+++.+++.|+..++||+|+||.++|++|++.|+
T Consensus 206 r--Rf~~~i~i--------------~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 206 R--RFERRIYI--------------PLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp H--TCCEEEEC--------------CCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred c--ccCEEEEe--------------CCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9 99999999 9999999999999999988777789999999999999999999999999999999
Q ss_pred HHhcc
Q 001395 645 RRYSK 649 (1086)
Q Consensus 645 rr~~~ 649 (1086)
++...
T Consensus 270 ~~~~~ 274 (355)
T 2qp9_X 270 RKIQS 274 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98643
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=4.4e-31 Score=296.26 Aligned_cols=227 Identities=39% Similarity=0.686 Sum_probs=203.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...|++|+|++++++.|++++..+. .++.|.++++.+++++|||||||||||++|+++|++++.+|+.++++++.+.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 3457899999999999999998763 467888999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
|+.+..++.+|+.+....|+||||||+|.+.+.+... ......+++.+|+..|+++....+++||++||+++.+|++
T Consensus 91 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~a 170 (301)
T 3cf0_A 91 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPA 170 (301)
T ss_dssp TTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGG
T ss_pred CchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChH
Confidence 9999999999999999999999999999998765321 1223467889999999988777889999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
++|+|||++.+++ +.|+.++|.+|++.+++..+.. .+.+++.++..++||+|+||.++|++|++.
T Consensus 171 l~r~gRf~~~i~i--------------~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 171 ILRPGRLDQLIYI--------------PLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKL 235 (301)
T ss_dssp GGSTTSSCEEEEC--------------CCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HhcCCccceEEec--------------CCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999887653 566788999999999999999999999999
Q ss_pred HHHHhc
Q 001395 643 CLRRYS 648 (1086)
Q Consensus 643 a~rr~~ 648 (1086)
|+++..
T Consensus 236 a~~~~~ 241 (301)
T 3cf0_A 236 AIRESI 241 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 41
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=1.1e-32 Score=302.77 Aligned_cols=251 Identities=40% Similarity=0.699 Sum_probs=217.5
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.+.+.|++++|++.+++.+++.+.+ +.+++.+..++...++++||+||||||||++|+++|++++.+|+.+++.++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45778999999999999999998886 78899999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC--CCCCccHHHHHHHHHHHhcccc-CCCEEEEEecCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES--DGVSVSDRVMSQLLVELDGLHQ-RVNVTVIAATNRPD 924 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~--~~~~~~~~v~~~LL~~Ld~~~~-~~~v~VI~aTN~p~ 924 (1086)
.+.|.....++.+|+.+....|+||||||+|.+...+...+ .......+.+++|+..|++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99998888888999999998999999999999987653211 1112223456778888886643 34599999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 1004 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~ 1004 (1086)
.+|++++|+|||+..++|+.|+.++|.++|+.++++.++..+.++..++..+.||+|+||+++|++|+..|..+. ...
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~--~~~ 240 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN--QKE 240 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC--CCS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCC
Confidence 999999999999999999999999999999999999888888889999999999999999999999998886543 467
Q ss_pred CCHHHHHHHHHhhCCCc
Q 001395 1005 ITMQHLKTAIRHVQPSE 1021 (1086)
Q Consensus 1005 It~~d~~~al~~~~p~~ 1021 (1086)
|+.+|+..++..+.|..
T Consensus 241 i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 241 VRQQHLKEAVERGIAGL 257 (268)
T ss_dssp CCHHHHHTSCTTCCCCC
T ss_pred cCHHHHHHHHHHHhhcc
Confidence 99999999999888863
No 42
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=5.9e-30 Score=283.48 Aligned_cols=244 Identities=44% Similarity=0.739 Sum_probs=213.9
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 847 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~ 847 (1086)
+.+.++|++++|++++++++.+.+.+ +.++..+..+++..++|++|+||||||||+++++|++..+.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34789999999999999999998775 46678899999999999999999999999999999999999999999998888
Q ss_pred ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 848 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
.+.+...+.++.+|+.+....|+++|+||+|.+...+.... .......+.+++++.+|++......++++++||+|+.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 88888888899999999888899999999999876553211 11123356788899999987776779999999999999
Q ss_pred ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001395 927 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 1006 (1086)
Q Consensus 927 D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It 1006 (1086)
|++++|++||++.++|+.|+.++|.+||+.+++..++..++++..++..+.||+++||+++|++|+..|.++. ...|+
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~I~ 269 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKIT 269 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CCSBC
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCcC
Confidence 9999999999999999999999999999999998888888899999999999999999999999999988764 45799
Q ss_pred HHHHHHHH
Q 001395 1007 MQHLKTAI 1014 (1086)
Q Consensus 1007 ~~d~~~al 1014 (1086)
.+||++++
T Consensus 270 ~~dl~~a~ 277 (278)
T 1iy2_A 270 MKDLEEAA 277 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=4.4e-30 Score=303.32 Aligned_cols=226 Identities=31% Similarity=0.561 Sum_probs=195.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-g~~~i~I~~s~l~s~~ 484 (1086)
...|++|+|++.+++.|++++..+.. ++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++++.+.|
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 35678999999999999999987732 344432 35678999999999999999999999999 8899999999999999
Q ss_pred chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc-CCCeeEEeccCCCCCCCccc
Q 001395 485 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~-~~~viVIatTN~~d~idpaL 563 (1086)
.|+++..++.+|+.+....|+||||||||.+++.+.....+...+++.+|+..|+++.. ..+++||++||+++.+++++
T Consensus 209 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al 288 (444)
T 2zan_A 209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 288 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHH
Confidence 99999999999999999999999999999999888776667788999999999998753 57899999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+| ||++.+.+ +.|+.++|.+|++.++...+..+++.+++.|+..++||+|+||..+|++|++.|
T Consensus 289 ~r--Rf~~~i~i--------------~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 289 RR--RFEKRIYI--------------PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp HT--TCCEEEEC--------------CCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred Hh--hcceEEEe--------------CCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99 99999999 999999999999999998877778899999999999999999999999999999
Q ss_pred HHHhcc
Q 001395 644 LRRYSK 649 (1086)
Q Consensus 644 ~rr~~~ 649 (1086)
+++...
T Consensus 353 ~r~~~~ 358 (444)
T 2zan_A 353 VRKVQS 358 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998643
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=7e-30 Score=302.11 Aligned_cols=225 Identities=38% Similarity=0.612 Sum_probs=201.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++|+|++++++.+++++.....+..+..+|...++++||+||||||||++|+++|++++.+|+.++++++...+.|.
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~ 92 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGV 92 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcc
Confidence 45789999999999999999876556788899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC---CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~---~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
.+..++.+|+.|....|+||||||+|.+.+++.. ++.....+++.+|+..|+++....+++||++||+++.+|++++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 9999999999999999999999999999887653 2334456788999999998877788999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
|+|||++.+.+ +.|+.++|.+|++.+++..+.. .+.+++.++..+.||+|+||.++|++|++.|.
T Consensus 173 R~gRFd~~i~i--------------~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 173 RPGRFDKKIVV--------------DPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAA 237 (476)
T ss_dssp STTSSCEEEEC--------------CCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCcceeEeec--------------CCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999887654 45568889999999999999999999999987
Q ss_pred HHh
Q 001395 645 RRY 647 (1086)
Q Consensus 645 rr~ 647 (1086)
++.
T Consensus 238 ~~~ 240 (476)
T 2ce7_A 238 REG 240 (476)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
No 45
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=6.4e-29 Score=271.53 Aligned_cols=226 Identities=36% Similarity=0.608 Sum_probs=196.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++|+|++++++.+++++.....++.+..++...+++++|+||||||||++|+++|+.++.+++.+++.++...+.|+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~ 88 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 88 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCC
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhh
Confidence 45789999999999999998876456777788899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
.++.++.+|+.+....|+++||||+|.+.+.+... +.+...+.+.+++..|+++....+++||++||+++.++++++
T Consensus 89 ~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~ 168 (257)
T 1lv7_A 89 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 168 (257)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGG
T ss_pred hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHc
Confidence 99999999999998889999999999998765432 233345788899999998877788999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
|+|||++.+.+ +.|+.++|.+|++.+++..+.. .+.++..++..+.||+++||.++|++|+..|.
T Consensus 169 r~~rf~~~i~i--------------~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 169 RPGRFDRQVVV--------------GLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp STTSSCEEEEC--------------CCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcCCeEEEe--------------CCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999998 9999999999999999876543 45567889999999999999999999999998
Q ss_pred HHhc
Q 001395 645 RRYS 648 (1086)
Q Consensus 645 rr~~ 648 (1086)
++..
T Consensus 234 ~~~~ 237 (257)
T 1lv7_A 234 RGNK 237 (257)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 7643
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.5e-28 Score=272.19 Aligned_cols=224 Identities=38% Similarity=0.645 Sum_probs=199.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhh-hhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 408 QDISKLGGLSKEYAILKDIIISSS-VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~-~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
..|++|+|++++++.|++.+..+. .++.+..+|+.++.++||+||||||||++|+++|+.++.+++.+++.++...+.|
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~ 93 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIG 93 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTT
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccc
Confidence 457899999999999999998763 4578888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC---chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL 563 (1086)
+.+..+..+|..+....|+||||||+|.+++++.... .....+.+..+++.++++....+++||+|||.++.+++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l 173 (285)
T 3h4m_A 94 EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAI 173 (285)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHH
Confidence 9999999999999999999999999999988765432 2334566677777777777778899999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+|++||++.+.+ +.|+.++|.+|++.+++..... .+.+++.++..+.||+++|+..+|++|.+.|
T Consensus 174 ~~~~Rf~~~i~~--------------~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a 238 (285)
T 3h4m_A 174 LRPGRFDRIIEV--------------PAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNA 238 (285)
T ss_dssp HSTTSEEEEEEC--------------CCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCcCCeEEEE--------------CCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 9999999999999998876544 4566899999999999999999999999888
Q ss_pred HHH
Q 001395 644 LRR 646 (1086)
Q Consensus 644 ~rr 646 (1086)
+++
T Consensus 239 ~~~ 241 (285)
T 3h4m_A 239 IRE 241 (285)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.96 E-value=1.6e-29 Score=299.57 Aligned_cols=362 Identities=20% Similarity=0.243 Sum_probs=242.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEcccccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg--~~~i~I~~s~l~s~~~ 485 (1086)
..|++|+|++++++.+.+++... ..+..+++++|||||||||||++|+++|++++ .+|+.++++++.+++.
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSS
T ss_pred hchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhh
Confidence 34689999999999999888654 24666889999999999999999999999999 8999999999999999
Q ss_pred hhhHHHHHHHHHHh---hcCCCeEEEEccchhhccCCCCCCchhHH-------------------HHHHHHHHHhh--cc
Q 001395 486 GESEQALHEVFDSA---SQSAPAVVFIDELDAIAPARKDGGEELSQ-------------------RMVATLLNLMD--GV 541 (1086)
Q Consensus 486 Gese~~l~~vf~~a---~~~~P~ILfIDEiD~l~~~r~~~~~~~~~-------------------rv~~~Ll~lLd--~l 541 (1086)
|+++. ++.+|+.| +...|+||||||+|.+++++......... ++...++..|+ +.
T Consensus 107 ~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~ 185 (456)
T 2c9o_A 107 KKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERV 185 (456)
T ss_dssp CHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTC
T ss_pred hhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccC
Confidence 99998 99999999 77889999999999999887544211111 11223445554 22
Q ss_pred ccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCC--CHHHHHHHHHHHHccCccccchHHHHH
Q 001395 542 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVP--SPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 542 ~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~P--d~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
...+.++|+++||+++.+|++++|+||||+++.+. ++.| +.++|.+|++.+. ..+++.
T Consensus 186 ~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~------------v~~p~~~~~~R~~il~~~~--------~~dl~~ 245 (456)
T 2c9o_A 186 EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEY------------VPLPKGDVHKKKEIIQDVT--------LHDLDV 245 (456)
T ss_dssp CTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSE------------ECCCCSCSEEEEEEEEEEE--------HHHHHH
T ss_pred CCCCEEEEEcCCCCcccCChhhcCCcccCcceeEe------------cCCCchhHHHHHHHHHHHH--------HHHHHH
Confidence 33334666699999999999999999999954431 1555 5577888876433 346888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCccccccccccccccccccccccccCCCCCC
Q 001395 620 LSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTS 699 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1086)
++..++| |+|+.++|...... ..
T Consensus 246 ~a~~t~g--gadl~~l~~~i~~p--~~----------------------------------------------------- 268 (456)
T 2c9o_A 246 ANARPQG--GQDILSMMGQLMKP--KK----------------------------------------------------- 268 (456)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred HHHhCCC--hhHHHHHHhhhccc--ch-----------------------------------------------------
Confidence 9999999 99999887532100 00
Q ss_pred CCccccccCCcccccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCcccccccc
Q 001395 700 DLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGG 779 (1086)
Q Consensus 700 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G 779 (1086)
..+ .. + .+
T Consensus 269 ---------------------~~I----------------------~~-~------------lr---------------- 276 (456)
T 2c9o_A 269 ---------------------TEI----------------------TD-K------------LR---------------- 276 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------hhH----------------------HH-H------------HH----------------
Confidence 000 00 0 00
Q ss_pred chhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHH
Q 001395 780 QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRS 859 (1086)
Q Consensus 780 ~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~ 859 (1086)
+.+.+.+.++.
T Consensus 277 -~~I~~~l~~~~-------------------------------------------------------------------- 287 (456)
T 2c9o_A 277 -GEINKVVNKYI-------------------------------------------------------------------- 287 (456)
T ss_dssp -CHHHHHHHHHH--------------------------------------------------------------------
T ss_pred -HHHHHHHHHHH--------------------------------------------------------------------
Confidence 00000000000
Q ss_pred HHHHHH-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC-------------CCC
Q 001395 860 LFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-------------PDK 925 (1086)
Q Consensus 860 lf~~A~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~-------------p~~ 925 (1086)
..++ ...|.|+||||+|.| +...++.|++.|+... .++ +|++||. ++.
T Consensus 288 --~~g~~~v~~~VliIDEa~~l-------------~~~a~~aLlk~lEe~~--~~~-~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 288 --DQGIAELVPGVLFVDEVHML-------------DIECFTYLHRALESSI--API-VIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp --HTTSEEEEECEEEEESGGGC-------------BHHHHHHHHHHTTSTT--CCE-EEEEECCSEEECBTTSSCEEETT
T ss_pred --HhccccccceEEEEechhhc-------------CHHHHHHHHHHhhccC--CCE-EEEecCCcccccccccccccccc
Confidence 0000 011349999999976 5788999999998543 344 5545533 678
Q ss_pred CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 001395 926 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS-EGCTGADISLICREAAISAIEENLDAS 1003 (1086)
Q Consensus 926 lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t-~g~sgadl~~l~~~A~~~A~~~~~~~~ 1003 (1086)
+++.+++ ||.. +.|++|+.++..++++..+...... .+..+..++..+ .| +.+....+++.|...|..++ ..
T Consensus 350 l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~--~~ 423 (456)
T 2c9o_A 350 IPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING--KD 423 (456)
T ss_dssp CCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT--CS
T ss_pred CChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC--CC
Confidence 9999999 9976 6999999999999999887644433 333467788877 65 78888889998888887665 56
Q ss_pred CCCHHHHHHHHHhhCC
Q 001395 1004 RITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 1004 ~It~~d~~~al~~~~p 1019 (1086)
.|+.+|+..++..+-.
T Consensus 424 ~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 424 SIEKEHVEEISELFYD 439 (456)
T ss_dssp SBCHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHhcC
Confidence 7999999999877643
No 48
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=268.44 Aligned_cols=225 Identities=34% Similarity=0.532 Sum_probs=181.3
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhh
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ges 488 (1086)
.|++|+|++.+++.|++++.....++.+..+|+.+++++||+||||||||++|+++|++++.+++.+++.++...+.|..
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChh
Confidence 46899999999999999998765667788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC----chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG----EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 489 e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
+..++.+|+.+....|+||||||+|.+..++.... .......+..|+..+++.....++++|++||.++.+|++++
T Consensus 84 ~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~ 163 (262)
T 2qz4_A 84 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALM 163 (262)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGG
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHh
Confidence 99999999999988899999999999987654321 22234567788888888776778999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchH-HHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDS-EVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~-~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
|+|||++.+++ +.|+.++|.+|++.++...+...... .+..++..++||+++||..+|++|++.|
T Consensus 164 ~~~R~~~~i~i--------------~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 164 RPGRLDRHVFI--------------DLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHA 229 (262)
T ss_dssp STTSCCEEEEC--------------CSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-
T ss_pred cCCcCCeEEEe--------------CCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998 99999999999999998877654433 4588999999999999999999999888
Q ss_pred HHHh
Q 001395 644 LRRY 647 (1086)
Q Consensus 644 ~rr~ 647 (1086)
.++.
T Consensus 230 ~~~~ 233 (262)
T 2qz4_A 230 AREG 233 (262)
T ss_dssp ----
T ss_pred HHcC
Confidence 7653
No 49
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=278.84 Aligned_cols=224 Identities=35% Similarity=0.603 Sum_probs=194.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccc
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~ 485 (1086)
...|++|+|++.+++.|++++..+.. ++.+...+ .+++++||+||||||||++|+++|++++.+|+.++++++...+.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWV 158 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcccc
Confidence 45678999999999999999987632 34444343 67889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc--CCCeeEEeccCCCCCCCccc
Q 001395 486 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--TDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 486 Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~--~~~viVIatTN~~d~idpaL 563 (1086)
|+.+..++.+|..+....|+||||||+|.+.+.+..+......+++.+|+..|++... ..+++||++||+++.+++++
T Consensus 159 g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 238 (357)
T 3d8b_A 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAA 238 (357)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHH
Confidence 9999999999999998999999999999999877665566678889999999998653 46799999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+| ||+..+.+ +.|+.++|.+|++.+++..+..+++.+++.++..+.||+++||..||++|.+.+
T Consensus 239 ~~--Rf~~~i~i--------------~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 239 RR--RLVKRLYI--------------PLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP 302 (357)
T ss_dssp HT--TCCEEEEC--------------CCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred Hh--hCceEEEe--------------CCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99 99998888 999999999999999988777788899999999999999999999999999988
Q ss_pred HHHh
Q 001395 644 LRRY 647 (1086)
Q Consensus 644 ~rr~ 647 (1086)
+++.
T Consensus 303 ir~l 306 (357)
T 3d8b_A 303 IRSL 306 (357)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8764
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=3.8e-28 Score=270.66 Aligned_cols=223 Identities=31% Similarity=0.547 Sum_probs=192.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
..|++|+|++++++.|++.+..+.. ++.+..++ .++.++||+||||||||++|+++|++++.+|+.++++++...+.|
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~ 96 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVG 96 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccc
Confidence 4578999999999999999987633 34444444 468899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccC---CCeeEEeccCCCCCCCccc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT---DGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~---~~viVIatTN~~d~idpaL 563 (1086)
+.+..++.+|..+....|+||||||+|.+...+.....+...++...|+..+++.... .+++||++||+++.+++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 9999999999999999999999999999988765544445577888899999887543 5799999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
++ ||+..+.+ +.|+.++|.+|++.+++..+..+++..++.++..++||+++|+..+|++|.+.+
T Consensus 177 ~~--R~~~~i~~--------------~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 177 LR--RFTKRVYV--------------SLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp HH--HCCEEEEC--------------CCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred Hh--hCCeEEEe--------------CCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99 99999988 999999999999999988777778889999999999999999999999999988
Q ss_pred HHHh
Q 001395 644 LRRY 647 (1086)
Q Consensus 644 ~rr~ 647 (1086)
+++.
T Consensus 241 ~r~~ 244 (297)
T 3b9p_A 241 IREL 244 (297)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8764
No 51
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=6.3e-28 Score=286.99 Aligned_cols=224 Identities=39% Similarity=0.621 Sum_probs=199.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++|+|+++++..+++++.....+..+..+++..+++++|+||||||||+||+++|++++.+++.++++++...+.|.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~ 107 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 107 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhh
Confidence 45689999999999999998876556788889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC---CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~---~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
....++.+|+.+....|+|+||||||.+...+.. .+.+...+.+.+|+..|++......+++|++||+++.+|++++
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLl 187 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 187 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccc
Confidence 9999999999998888999999999999876643 2234456788999999999887788999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
|+|||++.+.| +.|+.++|.+||+.+++..++. .+.++..++..+.||+|+||.++|++|++.|.
T Consensus 188 r~gRfdr~i~i--------------~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 188 RPGRFDRQIAI--------------DAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAA 252 (499)
T ss_dssp STTSSCCEEEC--------------CCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHT
T ss_pred cccccceEEec--------------CCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999988765433 45678899999999999999999999998886
Q ss_pred HH
Q 001395 645 RR 646 (1086)
Q Consensus 645 rr 646 (1086)
++
T Consensus 253 ~~ 254 (499)
T 2dhr_A 253 RE 254 (499)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=3e-27 Score=257.89 Aligned_cols=225 Identities=39% Similarity=0.620 Sum_probs=194.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
...|++++|+++.+..+++++.....+..+..+++..+++++|+||||||||||++++++.++..++.+++.++...+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~ 91 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 91 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhh
Confidence 35678999999999999998876545577888999999999999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCC---CCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~---~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL 563 (1086)
+....++.+|+.+....|+++||||+|.+...+.. ...+...+.+.+++..|++......++++++||+|+.+|+++
T Consensus 92 ~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l 171 (254)
T 1ixz_A 92 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 171 (254)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGG
T ss_pred HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHH
Confidence 88888999999998888999999999999866542 123345677888999999887777789999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+|++||++.+++ +.|+.++|.+|++.+++..... .+.++..++..++||+++||.++|++|+..|
T Consensus 172 ~r~~rf~~~i~i--------------~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 172 LRPGRFDRQIAI--------------DAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLA 236 (254)
T ss_dssp GSTTSSCEEEEC--------------CSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCcCCeEEee--------------CCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999988765433 4556889999999999999999999999988
Q ss_pred HHH
Q 001395 644 LRR 646 (1086)
Q Consensus 644 ~rr 646 (1086)
.++
T Consensus 237 ~~~ 239 (254)
T 1ixz_A 237 ARE 239 (254)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 53
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=9.7e-28 Score=301.94 Aligned_cols=250 Identities=47% Similarity=0.788 Sum_probs=229.8
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
.+.++|++|+|++.++++|++.+.+++.+++.|+.+++.++.++||+||||||||++|++||++++.+++.+++.++.++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCCh
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 928 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~ 928 (1086)
+.|+.++.++.+|..+....|+||||||+|.++..++... .....+++++|+..|++.....+++||+|||+++.+|+
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~--~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC--SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc--chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 9999999999999999999999999999999988765432 24567899999999999888889999999999999999
Q ss_pred hhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcC-------
Q 001395 929 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD------- 1001 (1086)
Q Consensus 929 aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~------- 1001 (1086)
++.++|||++.+.++.|+.++|.+|++.+++++.+..+.++..++..+.||+++++..+|++|++.++++...
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~ 435 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 9999999999999999999999999999999999988999999999999999999999999999999876532
Q ss_pred --------CCCCCHHHHHHHHHhhCCC
Q 001395 1002 --------ASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 1002 --------~~~It~~d~~~al~~~~p~ 1020 (1086)
...++.+||..++....|+
T Consensus 436 ~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred ccchhhhhhhhhhhhhhhccccccCch
Confidence 2347778888888877654
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=271.81 Aligned_cols=223 Identities=33% Similarity=0.581 Sum_probs=186.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhh-hhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSV-KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~-~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
..|++|+|++.+++.|++++..+.. ++.+..++ .++.++|||||||||||++|+++|++++.+|+.+++.++.+.|.|
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g 190 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVG 190 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC------
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccc
Confidence 4578999999999999999987743 34444444 467899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc--CCCeeEEeccCCCCCCCcccc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--TDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~--~~~viVIatTN~~d~idpaL~ 564 (1086)
+.+..++.+|+.+....|+||||||||.++..+.........+++..|+..|++... ..+++||++||+++.++++++
T Consensus 191 ~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~ 270 (389)
T 3vfd_A 191 EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVL 270 (389)
T ss_dssp -CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHH
Confidence 999999999999999999999999999998877665556678899999999998764 467999999999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
| ||+..+++ +.|+.++|.+|++.++...+..+.+..++.++..++||++++|..||+.|...++
T Consensus 271 ~--R~~~~i~i--------------~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~ 334 (389)
T 3vfd_A 271 R--RFIKRVYV--------------SLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPI 334 (389)
T ss_dssp T--TCCEEEEC--------------CCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHH
T ss_pred c--CcceEEEc--------------CCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9 99988988 9999999999999999888877888999999999999999999999999998888
Q ss_pred HHh
Q 001395 645 RRY 647 (1086)
Q Consensus 645 rr~ 647 (1086)
++.
T Consensus 335 rel 337 (389)
T 3vfd_A 335 REL 337 (389)
T ss_dssp HTS
T ss_pred Hhh
Confidence 764
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=5.8e-26 Score=251.39 Aligned_cols=225 Identities=39% Similarity=0.620 Sum_probs=193.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccch
Q 001395 407 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 407 ~~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~G 486 (1086)
...|++|+|++++++.+++++.....+..+..+++..+++++|+||||||||||++++++.++..++.+++.++...+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~ 115 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 115 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhh
Confidence 34578999999999999998876545677888899999999999999999999999999999999999999998888888
Q ss_pred hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCC---CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccc
Q 001395 487 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 487 ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL 563 (1086)
+....+..+|+.+....|+++|+||+|.+...+... ......+.+.+++..|++......++++++||+++.+|+++
T Consensus 116 ~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l 195 (278)
T 1iy2_A 116 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 195 (278)
T ss_dssp HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhH
Confidence 888889999999988889999999999987655321 22334667788888888877667789999999999999999
Q ss_pred cCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 564 RRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 564 ~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
+|++||++.+++ +.|+.++|.+|++.+++..... .+.++..++..++||+++||.++|++|+..|
T Consensus 196 ~r~~rf~~~i~i--------------~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 196 LRPGRFDRQIAI--------------DAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLA 260 (278)
T ss_dssp HSTTSSCCEEEC--------------CCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCcCCeEEEe--------------CCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999988765433 4556889999999999999999999999888
Q ss_pred HHH
Q 001395 644 LRR 646 (1086)
Q Consensus 644 ~rr 646 (1086)
.++
T Consensus 261 ~~~ 263 (278)
T 1iy2_A 261 ARE 263 (278)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=1.4e-27 Score=262.17 Aligned_cols=222 Identities=36% Similarity=0.595 Sum_probs=186.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++|+|++.+++.|++++.....++.+..++...++++||+||||||||++|+++|++++.+++.+++.++...+.|.
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL 87 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch
Confidence 45689999999999999998876567888889999999999999999999999999999999999999999999888888
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC----chhHHHHHHHHHHHhhcccc-CCCeeEEeccCCCCCCCcc
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG----EELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~rv~~~Ll~lLd~l~~-~~~viVIatTN~~d~idpa 562 (1086)
.+..++.+|+.+....|+||||||+|.+...+..++ .....+++..|+..|++... ..+++||++||.++.++++
T Consensus 88 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~ 167 (268)
T 2r62_A 88 GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPA 167 (268)
T ss_dssp CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHh
Confidence 887788899999888899999999999987653211 11123345667777777643 3458999999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
++|+|||+..+.+ +.|+.++|.+|++.+++..... .+.+++.++..+.||+|+||.++|++|++.
T Consensus 168 l~r~~Rf~~~i~i--------------~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~ 232 (268)
T 2r62_A 168 LMRPGRFDRQVLV--------------DKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALL 232 (268)
T ss_dssp GGSSSSSCCCCBC--------------CCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHT
T ss_pred HcCCCCCCeEEEe--------------cCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999888 9999999999999998876543 455577888899999999999999999876
Q ss_pred HH
Q 001395 643 CL 644 (1086)
Q Consensus 643 a~ 644 (1086)
|.
T Consensus 233 a~ 234 (268)
T 2r62_A 233 AG 234 (268)
T ss_dssp TS
T ss_pred HH
Confidence 64
No 57
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=7.1e-26 Score=253.16 Aligned_cols=176 Identities=21% Similarity=0.330 Sum_probs=140.4
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHH----HhcCCeEEEEecCchh
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA----RANAPSIIFFDEIDGL 880 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A----~~~~p~ILflDEid~L 880 (1086)
+.++|+++|||||||||||++|+++|++++.+|+.++++++.++|+|+.++.++.+|..| +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 677889999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHH
Q 001395 881 AAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 949 (1086)
Q Consensus 881 ~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~e 949 (1086)
.+.++..........++++.|++.||+.. ...+++||+|||+++.+|++++|+|||++.++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 88654333323345678899999998443 45679999999999999999999999999887 479999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHH
Q 001395 950 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISL 986 (1086)
Q Consensus 950 R~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~ 986 (1086)
|.+|++.++... +++...++..++||++++|..
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999888753 456889999999999988753
No 58
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=1.3e-23 Score=245.42 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=80.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhh-hHhhhcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc-ccchh
Q 001395 411 SKLGGLSKEYAILKDIIISSSVK-STLSSLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGE 487 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~-~~~~~lgi-~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s-~~~Ge 487 (1086)
++|+|+++.|+.|...+..+..+ ..+..+.. .+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 47999999999999988765222 22222332 25789999999999999999999999999999999999888 59995
Q ss_pred -hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEec-cCCCCCCCccccC
Q 001395 488 -SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA-TNRPDSIEPALRR 565 (1086)
Q Consensus 488 -se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIat-TN~~d~idpaL~r 565 (1086)
.+..++.+|+.+... +++||++.+.. ........+++.+|+..||++.....+ +++ ||+++.+|++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~---~~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRA---RAEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhc---cchhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 899999999988665 45899887643 233445789999999999998766554 455 9999999999999
Q ss_pred CCCcceeeehhhhhhhhhcccCCCCCCCHH-HHHHHHHH
Q 001395 566 PGRLDREIEIDMSFLFSLLKNSPAAVPSPA-QRLEILHA 603 (1086)
Q Consensus 566 ~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~-eR~~IL~~ 603 (1086)
+||||++|+| +.|+.. .|.+|+..
T Consensus 166 ggr~D~~i~i--------------~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 166 GQLDDKEIEI--------------DVSAGVSMGVEIMAP 190 (444)
T ss_dssp ---------------------------------------
T ss_pred CCCcceEEEE--------------cCCCCccchhhhhcC
Confidence 9999999999 888877 67777653
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=7.9e-25 Score=244.69 Aligned_cols=178 Identities=21% Similarity=0.280 Sum_probs=140.7
Q ss_pred hhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEcc
Q 001395 436 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDE 511 (1086)
Q Consensus 436 ~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDE 511 (1086)
+...+.+++.++|||||||||||++|+++|++++.+|+.++++++.+.+.|+.+..++.+|+.+ +...|+||||||
T Consensus 28 l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE 107 (293)
T 3t15_A 28 LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIND 107 (293)
T ss_dssp SCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEEC
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3345778899999999999999999999999999999999999999999999999999999988 577899999999
Q ss_pred chhhccCCCCCC--chhHHHHHHHHHHHhhccc-----------cCCCeeEEeccCCCCCCCccccCCCCcceeeehhhh
Q 001395 512 LDAIAPARKDGG--EELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMS 578 (1086)
Q Consensus 512 iD~l~~~r~~~~--~~~~~rv~~~Ll~lLd~l~-----------~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~ 578 (1086)
||.+++.+.... ....+++...|+++||+.. ...+++||+|||+++.+|++++|+|||++.+++
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--- 184 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--- 184 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC---
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC---
Confidence 999987544221 1235678899999998543 456799999999999999999999999998876
Q ss_pred hhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHH
Q 001395 579 FLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 634 (1086)
Q Consensus 579 ~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~ 634 (1086)
|+.++|.+|++.++.... .+.+.++..+.||++++|..
T Consensus 185 -------------P~~~~r~~Il~~~~~~~~-----~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 185 -------------PTREDRIGVCTGIFRTDN-----VPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp -------------CCHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHSCSCCHHH
T ss_pred -------------cCHHHHHHHHHHhccCCC-----CCHHHHHHHhCCCCcccHHH
Confidence 699999999998887543 33667888899999988864
No 60
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.87 E-value=1.7e-23 Score=274.80 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=117.2
Q ss_pred CCccccccccchhHHHHHHHHHhcchhc----------HHHHHh------hCCC----------CCCC--cceeCCCCCc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKH----------QEAFKR------IGTR----------PPTG--ILMFGPPGCS 821 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~----------~~~~~~------lg~~----------~~~g--vLL~GPpGTG 821 (1086)
+.+.|++++|++++|+.+.+.++|++.+ ++.++. .|+. +|+| +++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3489999999999999999999999955 456655 3333 5566 9999999999
Q ss_pred chHHHHHHHHHh---CCcEEEEeCCccc------------cccccc----cHHHHHHHHHHHHhcCCeEEEEecCchhhh
Q 001395 822 KTLMARAVASEA---GLNFLAVKGPELF------------SKWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLAA 882 (1086)
Q Consensus 822 KTtLAkalA~~~---~~~fi~v~~sel~------------~~~vGe----se~~ir~lf~~A~~~~p~ILflDEid~L~~ 882 (1086)
||++|++++.+. +.+.+.|+..+.. ++|+++ ++++++.+|.+|+...||+||+||+++|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998875 5566666665543 778888 899999999999999999999999999999
Q ss_pred hc---CCCCC-CCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 883 IR---GKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 883 ~r---~~~~~-~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
.+ +..++ +.++..|+++++|++|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 84 22222 2367789999999999998888888888 77765
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=3e-24 Score=254.38 Aligned_cols=204 Identities=20% Similarity=0.265 Sum_probs=146.8
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC--CcEEEEeCCccc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELF 846 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~--~~fi~v~~sel~ 846 (1086)
.+...|++++|++++++.+.+++.+. ..+..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35668999999999999998887642 23566788999999999999999999999999 999999999999
Q ss_pred cccccccHHHHHHHHHHH---HhcCCeEEEEecCchhhhhcCCCCCCC-----------------CccHHHHHHHHHHHh
Q 001395 847 SKWVGESEKAVRSLFAKA---RANAPSIIFFDEIDGLAAIRGKESDGV-----------------SVSDRVMSQLLVELD 906 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A---~~~~p~ILflDEid~L~~~r~~~~~~~-----------------~~~~~v~~~LL~~Ld 906 (1086)
++|+|+++. ++.+|..| +...||||||||+|.+++.|+....+. +...++.++++..|+
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 99999999 788899999999999998875542211 001123344666665
Q ss_pred --ccccCCCEEEEEecCCCCCCChhhhCCCCcce--EeecCCCC--HHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCc
Q 001395 907 --GLHQRVNVTVIAATNRPDKIDPALLRPGRFDR--LLYVGPPN--ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 980 (1086)
Q Consensus 907 --~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~--~I~~~~P~--~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~s 980 (1086)
+....+.++|++|||+++.+|+++.|+||||+ .++++.|+ .++|.+|++.+.. .+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 22333345666899999999999999999998 66777774 4778888765543 278899999999
Q ss_pred HHHHHHHHHH
Q 001395 981 GADISLICRE 990 (1086)
Q Consensus 981 gadl~~l~~~ 990 (1086)
|+|+.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999964
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=3.6e-21 Score=215.12 Aligned_cols=226 Identities=17% Similarity=0.195 Sum_probs=176.9
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCC---CcceeCCCCCcchHHHHHHHHHh-------CCcEEEEeCC
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT---GILMFGPPGCSKTLMARAVASEA-------GLNFLAVKGP 843 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~---gvLL~GPpGTGKTtLAkalA~~~-------~~~fi~v~~s 843 (1086)
+.+++|++++++.+.+.+.+.. .+..+.+.|+..+. ++||+||||||||++|+++|+.+ ..+++.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4589999999999999998754 46666777765433 59999999999999999999887 3489999999
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 844 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
++.+.++|.....++.+|..+ .++||||||+|.+...+.. ......+++.|+..|+.. ..+++||++||.+
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~ 179 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN--RDDLVVILAGYAD 179 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC--CCCEEEEEeCChH
Confidence 999999999999999999887 3569999999999755432 244678999999999854 4578999999865
Q ss_pred C-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc-------CCCcHHHHHHHHHH
Q 001395 924 D-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS-------EGCTGADISLICRE 990 (1086)
Q Consensus 924 ~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t-------~g~sgadl~~l~~~ 990 (1086)
+ .++|++.+ ||+.+++|++|+.+++.+|++.++++.... .+..+..++... ...+++++.++++.
T Consensus 180 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 180 RMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 3 25789999 999999999999999999999999876654 233355555542 22358999999999
Q ss_pred HHHHHHHHhcCC--CCCCHHHHH
Q 001395 991 AAISAIEENLDA--SRITMQHLK 1011 (1086)
Q Consensus 991 A~~~A~~~~~~~--~~It~~d~~ 1011 (1086)
|+..+..+.... ..++.+++.
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHh
Confidence 998776665432 445555543
No 63
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=1.5e-20 Score=210.19 Aligned_cols=218 Identities=24% Similarity=0.278 Sum_probs=178.2
Q ss_pred ccc-ccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHc-------CCcEEEEcc
Q 001395 409 DIS-KLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDS-------GVNLFTVNG 477 (1086)
Q Consensus 409 ~l~-~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~---~~~vLL~GPpGTGKTtLAralA~~l-------g~~~i~I~~ 477 (1086)
.++ +|+|++++++.|++++........+...|+.+ +.++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 344 79999999999999998775566666677654 4569999999999999999999987 338999999
Q ss_pred cccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 478 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 478 s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
.++.+.+.|.....+..+|+.+. ++||||||+|.++..+.. ......++..|+..|+.. ..++++|+++|..+
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN--RDDLVVILAGYADR 180 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHH
T ss_pred HHhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHH
Confidence 99999999999999999998873 569999999999865432 233567888999999863 45788999987653
Q ss_pred -----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHH-------cC
Q 001395 558 -----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA-------TH 625 (1086)
Q Consensus 558 -----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~-------t~ 625 (1086)
.++|+|++ ||+..+.+ +.|+.+++.+|++.++...+..+++..++.++.. ..
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~--------------~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEF--------------PDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPH 244 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEE--------------CCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhhCHHHHH--hCCeEEEc--------------CCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCC
Confidence 35789998 99989998 9999999999999999988877888888888876 33
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 626 GFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 626 GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
..+++++.++++.|...+..|...
T Consensus 245 ~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 245 FANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999999888777543
No 64
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=3.6e-19 Score=201.76 Aligned_cols=216 Identities=19% Similarity=0.209 Sum_probs=169.6
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
.+.+|++++|++.+++.+..++..... ...++.++||+||||||||++|+++|++.+.+|+.++++.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 345899999999999999988875321 124567799999999999999999999999999999987652
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc----------------CCC
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ----------------RVN 913 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~----------------~~~ 913 (1086)
....+...+.. ...+++|||||||.+ ....++.|+..|+...- ..+
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRL-------------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGC-------------CHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhc-------------CHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 22333344432 356789999999966 45678888888875421 114
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 914 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 914 v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
+++|++||+...+++++++ ||+..+.|++|+.+++..+++.++...+.. .+..++.++..+.| +.+++.++++.+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 8999999999999999999 999999999999999999999999877654 33446777776665 6789999999887
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 001395 993 ISAIEENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 993 ~~A~~~~~~~~~It~~d~~~al~~~~p 1019 (1086)
..+.... ...|+.+++..++.....
T Consensus 232 ~~a~~~~--~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 232 DFADVND--EEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHTT--CSEECHHHHHHHHHHHTC
T ss_pred HHHHhhc--CCccCHHHHHHHHHHhCC
Confidence 7765443 456999999999877554
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.82 E-value=2.9e-19 Score=204.65 Aligned_cols=221 Identities=23% Similarity=0.297 Sum_probs=166.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--cEEEEeCCcccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFS 847 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~--~fi~v~~sel~~ 847 (1086)
|...|++++|++.+++.+....... ..+..+++++||+||||||||++|+++|+.++. +|+.+++.++..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4456999999999998876655431 124445678999999999999999999999874 899998876444
Q ss_pred ccc-------------------------------------------------cccHHHHHHHHHHHHh-----c----CC
Q 001395 848 KWV-------------------------------------------------GESEKAVRSLFAKARA-----N----AP 869 (1086)
Q Consensus 848 ~~v-------------------------------------------------Gese~~ir~lf~~A~~-----~----~p 869 (1086)
.+. |+....++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 332 2224455566655433 1 26
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec-----------CCCCCCChhhhCCCCcce
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT-----------NRPDKIDPALLRPGRFDR 938 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT-----------N~p~~lD~aLlrpgRFd~ 938 (1086)
+||||||+|.+ ....++.|+..++... ..++++++. |.++.+++++++ ||..
T Consensus 191 ~vl~IDEi~~l-------------~~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 191 GVLFIDEVHML-------------DIESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp CEEEEESGGGS-------------BHHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred ceEEEhhcccc-------------ChHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 89999999966 4677888888887542 245444443 347889999999 9965
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 939 LLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 939 ~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
+.|++|+.+++.++++.++...+.. .+..++.+++.+.+.+.+++.++|+.|+..|..+. ...|+.+|++.++..+
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~--~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK--GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHS
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHh
Confidence 7999999999999999998775543 34457888999885689999999999999887764 5689999999999874
Q ss_pred C
Q 001395 1018 Q 1018 (1086)
Q Consensus 1018 ~ 1018 (1086)
.
T Consensus 331 ~ 331 (368)
T 3uk6_A 331 L 331 (368)
T ss_dssp B
T ss_pred c
Confidence 3
No 66
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.81 E-value=1.8e-19 Score=202.55 Aligned_cols=262 Identities=21% Similarity=0.249 Sum_probs=184.7
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
.+.+|++++|.+.+++.+.+.+..... ....+.+++|+||||||||++|+++++.++.+|+.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 455899999999999999888764211 1234578999999999999999999999999999999887632
Q ss_pred ccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc----------------cCCC
Q 001395 850 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVN 913 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~----------------~~~~ 913 (1086)
...+...|..+ ...+++|||||+|.+ ....+..|+..|+... ...+
T Consensus 77 ----~~~l~~~l~~~-~~~~~~l~lDEi~~l-------------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ----PGDLAAILANS-LEEGDILFIDEIHRL-------------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ----HHHHHHHHTTT-CCTTCEEEETTTTSC-------------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ----hHHHHHHHHHh-ccCCCEEEEECCccc-------------ccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 22232333221 246789999999965 4556777888876532 1135
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 914 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 914 v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
+++|++||++..+++++.+ ||+.++.+++|+.+++..+++.++...+.. .+..++.++..+.| +.+++.++++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 8899999999999999998 998899999999999999999998766544 33457888888876 5578888888776
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhcccccccccc---ccccccccchh---HHHHHhhc
Q 001395 993 ISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGY---QLRPSKSIGSN---MWTLIKSI 1066 (1086)
Q Consensus 993 ~~A~~~~~~~~~It~~d~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~---L~~~~k~~ 1066 (1086)
..+... ....|+.+++..++........ .. ..+++.++........++ ....++.+|.. +|++|+++
T Consensus 216 ~~a~~~--~~~~i~~~~~~~~~~~~~~~~~-~l----~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~ 288 (324)
T 1hqc_A 216 DFAQVA--GEEVITRERALEALAALGLDEL-GL----EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPY 288 (324)
T ss_dssp TTSTTT--SCSCCCHHHHHHHHHHHTCCTT-CC----CHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHh--cCCCCCHHHHHHHHHHhccccc-CC----CHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHH
Confidence 655332 2457999999988876543210 00 011122222222222233 44555666665 99999886
Q ss_pred eEe
Q 001395 1067 SLF 1069 (1086)
Q Consensus 1067 ~~~ 1069 (1086)
.+.
T Consensus 289 ~i~ 291 (324)
T 1hqc_A 289 LIR 291 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=8.5e-20 Score=220.54 Aligned_cols=225 Identities=21% Similarity=0.274 Sum_probs=152.2
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCC-CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc--
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-- 847 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~-~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~-- 847 (1086)
..-+++++|++++++.+.+.+... .+... ++..++|+||||||||++|++||+.++.+++.+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~--------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQ--------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHH--------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH--------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 345688999999999988776532 12211 4556999999999999999999999999999999876533
Q ss_pred -------ccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc----------
Q 001395 848 -------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------- 910 (1086)
Q Consensus 848 -------~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~---------- 910 (1086)
.|+|...+.+...|..+....| ||||||||.+...+. ...++.|+..|+....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~---------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR---------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc---------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 6778888888888888876666 999999998865431 1245667777764321
Q ss_pred ---CCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHH-----hcCCCC------CcccHHHHHHHc
Q 001395 911 ---RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCS------SDVNIRELACLS 976 (1086)
Q Consensus 911 ---~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l-----~~~~l~------~d~~l~~La~~t 976 (1086)
..+++||+|||+++.++++|++ ||+ +|+|+.|+.+++.+|++.++ +...+. .+..+..++...
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 1578999999999999999999 995 79999999999999999876 233332 122355555533
Q ss_pred CC-CcHHHHHHHHH----HHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 977 EG-CTGADISLICR----EAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 977 ~g-~sgadl~~l~~----~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
.+ ...+++++.+. .|+..+++.......|+.+++.+++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 32 33455555544 444444443333456999999998865
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.78 E-value=8.2e-19 Score=195.34 Aligned_cols=240 Identities=20% Similarity=0.269 Sum_probs=168.6
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhh-CCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc-ccccc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 852 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~l-g~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~-~~vGe 852 (1086)
++++|++.+++.+...+..+.........+ ....+.++||+||||||||++|+++|+.++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 568999999999998876532221100000 1235678999999999999999999999999999999998876 56665
Q ss_pred c-HHHHHHHHHHH-----HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------cCCCEEEEE
Q 001395 853 S-EKAVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIA 918 (1086)
Q Consensus 853 s-e~~ir~lf~~A-----~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------~~~~v~VI~ 918 (1086)
. ...++.++..+ ....++||||||+|.+........ .......+++.|+..|++.. ...++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 3 34566666532 112367999999999876543211 11112345788999988642 234788888
Q ss_pred e----cCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHH----H-------HhcCCC---CCcccHHHHHHHcC---
Q 001395 919 A----TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI----H-------LRKIPC---SSDVNIRELACLSE--- 977 (1086)
Q Consensus 919 a----TN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~----~-------l~~~~l---~~d~~l~~La~~t~--- 977 (1086)
+ ++.+..+++++++ ||+..++|++|+.+++.+|++. + +..... ..+..++.|++.+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 5677889999998 9998899999999999999983 1 112222 13344677777662
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHHhcC--CC--CCCHHHHHHHHHhh
Q 001395 978 ----GCTGADISLICREAAISAIEENLD--AS--RITMQHLKTAIRHV 1017 (1086)
Q Consensus 978 ----g~sgadl~~l~~~A~~~A~~~~~~--~~--~It~~d~~~al~~~ 1017 (1086)
+.+.+++.++|+.+...+..+... .. .|+.+|+++++...
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 457899999999887665544322 11 49999999988765
No 69
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.77 E-value=2.2e-18 Score=203.18 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=181.2
Q ss_pred CCccccccccchhHH---HHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 770 PKVKWEDVGGQREVK---TQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 770 p~v~~~di~G~e~vk---~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
.+.+|++++|+++++ ..|...+... ...++||+||||||||++|++||+.++.+|+.+++...
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 446899999999998 6777766531 12579999999999999999999999999999987542
Q ss_pred cccccccHHHHHHHHHHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec--
Q 001395 847 SKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT-- 920 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT-- 920 (1086)
..+.++.++..+.. ..++||||||||.+. ...++.|+..|+. ..+++|++|
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-------------~~~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFN-------------KSQQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEEEEEESS
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-------------HHHHHHHHHHHhc----CceEEEecCCC
Confidence 34456666666653 468899999999773 3345668888874 467788777
Q ss_pred CCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC-------C-CCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 921 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP-------C-SSDVNIRELACLSEGCTGADISLICREAA 992 (1086)
Q Consensus 921 N~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~-------l-~~d~~l~~La~~t~g~sgadl~~l~~~A~ 992 (1086)
|....+++++++ ||. ++.|++|+.+++..+++.++.+.. + ..+..++.|+..+.| +.+++.++++.++
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 444679999999 885 778999999999999999987622 1 133447888888776 7788888888887
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhCCC---chhHHHHHHHHHHHHHhccccccccccccccccc
Q 001395 993 ISAIEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKS 1054 (1086)
Q Consensus 993 ~~A~~~~~~~~~It~~d~~~al~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1086)
..+.........|+.+++.+++...... ..+.+.+....|.+.+.+++.++..++..++...
T Consensus 220 ~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~ 284 (447)
T 3pvs_A 220 DMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITA 284 (447)
T ss_dssp HHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 7653111123469999999999876432 3345667778899999999888888777776554
No 70
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=2e-18 Score=190.07 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=158.4
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc-cccccccc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL-FSKWVGES 853 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel-~~~~vGes 853 (1086)
..++|.+...+.+...... ..+.+...+..++.++||+||||||||++|+++|+..+.+|+.+++++. ++...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4567777776666553221 1223333456777889999999999999999999999999999998763 22222233
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-cCCCEEEEEecCCCCCCCh-hhh
Q 001395 854 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDP-ALL 931 (1086)
Q Consensus 854 e~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-~~~~v~VI~aTN~p~~lD~-aLl 931 (1086)
...++.+|..+....++||||||||.+++.+... ......+++.|...+++.. ...+++||+|||.++.+++ .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 4678889999988889999999999997655322 2345677777877777653 3446889999999988888 455
Q ss_pred CCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCC----cHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 001395 932 RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGC----TGADISLICREAAISAIEENLDASRITM 1007 (1086)
Q Consensus 932 rpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~----sgadl~~l~~~A~~~A~~~~~~~~~It~ 1007 (1086)
+ ||+..+.+|+++. |.+|.+...+...+ .+.++..+++.+.|| +.+++.++++.|...+ .....
T Consensus 187 ~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-------~~~~~ 254 (272)
T 1d2n_A 187 N--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-------PEYRV 254 (272)
T ss_dssp T--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-------GGGHH
T ss_pred c--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-------hHHHH
Confidence 4 9998888865554 44455444443333 456788999999997 5677777776554322 23456
Q ss_pred HHHHHHHHhhCCC
Q 001395 1008 QHLKTAIRHVQPS 1020 (1086)
Q Consensus 1008 ~d~~~al~~~~p~ 1020 (1086)
+++..++......
T Consensus 255 ~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 255 RKFLALLREEGAS 267 (272)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCc
Confidence 6777777665544
No 71
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.76 E-value=2.4e-18 Score=197.61 Aligned_cols=236 Identities=20% Similarity=0.249 Sum_probs=162.7
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHh-hC-CCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc-cccc
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKR-IG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK-WVGE 852 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~-lg-~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~-~vGe 852 (1086)
.|+|++.+++.+...+............ .. ..++.++||+||||||||++|++||..++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999988643222111000 01 1256789999999999999999999999999999999988744 7887
Q ss_pred c-HHHHHHHHHHH----HhcCCeEEEEecCchhhhhcCCCCCCCCc-cHHHHHHHHHHHhccc-----------------
Q 001395 853 S-EKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGVSV-SDRVMSQLLVELDGLH----------------- 909 (1086)
Q Consensus 853 s-e~~ir~lf~~A----~~~~p~ILflDEid~L~~~r~~~~~~~~~-~~~v~~~LL~~Ld~~~----------------- 909 (1086)
. ...++.+|..+ ....++||||||||.+...+.....+... ..++++.|++.|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 6 55677777765 44567899999999998766443322222 2348999999999431
Q ss_pred --cCCCEEEEEecCCC----------CC-----------------------------------CChhhhCCCCcceEeec
Q 001395 910 --QRVNVTVIAATNRP----------DK-----------------------------------IDPALLRPGRFDRLLYV 942 (1086)
Q Consensus 910 --~~~~v~VI~aTN~p----------~~-----------------------------------lD~aLlrpgRFd~~I~~ 942 (1086)
...++++|+++|.. .. ++|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 11234444444432 11 6788887 99999999
Q ss_pred CCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHhcCCC---
Q 001395 943 GPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACL--SEGCTGADISLICREAAISAIEENLDAS--- 1003 (1086)
Q Consensus 943 ~~P~~~eR~~Il~~----~l~-------~~~l~---~d~~l~~La~~--t~g~sgadl~~l~~~A~~~A~~~~~~~~--- 1003 (1086)
.+|+.+++.+|++. +++ ..... .+..++.|+.. ...+.+|+|++++++++..++.+.....
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~ 333 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE 333 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999999998886 222 11222 23336667753 3455679999999999998887764432
Q ss_pred --CCCHHHHHHH
Q 001395 1004 --RITMQHLKTA 1013 (1086)
Q Consensus 1004 --~It~~d~~~a 1013 (1086)
.|+.+++++.
T Consensus 334 ~~~I~~~~v~~~ 345 (363)
T 3hws_A 334 KVVIDESVIDGQ 345 (363)
T ss_dssp EEECHHHHTTCC
T ss_pred eeEEcHHHHhCc
Confidence 3666666543
No 72
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=2e-19 Score=210.13 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=85.5
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCC-CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccc-cccc
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG 851 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~-~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~-~~vG 851 (1086)
.++|+|++++|+.+..++.++..+...+..+... +++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 3579999999999999998876666555544433 5688999999999999999999999999999999999888 5999
Q ss_pred c-cHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEe-cCCCCCCChh
Q 001395 852 E-SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA-TNRPDKIDPA 929 (1086)
Q Consensus 852 e-se~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~a-TN~p~~lD~a 929 (1086)
+ .+..++.+|..|... +++||++.+.... .....++++++|+..||++....++ +++ ||+++.||+|
T Consensus 94 ~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 94 KEVDSIIRDLTDSAMKL----VRQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CCTHHHHHHHHHHHHHH----HHHHHHHSCC-------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHhc----chhhhhhhhhccc-----hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 5 789999999998765 4589988764322 2245689999999999998655444 454 9999999999
Q ss_pred hhCCCCcceEeecCCCCHH-HHHHHH
Q 001395 930 LLRPGRFDRLLYVGPPNET-DREEIF 954 (1086)
Q Consensus 930 LlrpgRFd~~I~~~~P~~~-eR~~Il 954 (1086)
|+||||||+.|+++.|+.. .|.+|+
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 677765
No 73
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=2.5e-17 Score=188.58 Aligned_cols=203 Identities=21% Similarity=0.248 Sum_probs=153.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEcccccccccch
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNYG 486 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s~l~s~~~G 486 (1086)
.|++++|.+.+++.+..++... ..+..++.++||+||||||||++|+++|+.++. +++.+++..+...+.+
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS 114 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSC
T ss_pred chhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccc
Confidence 4789999999999887766544 124456789999999999999999999999975 7888888775544433
Q ss_pred h-------------------------------------------------hHHHHHHHHHHhhc-----C----CCeEEE
Q 001395 487 E-------------------------------------------------SEQALHEVFDSASQ-----S----APAVVF 508 (1086)
Q Consensus 487 e-------------------------------------------------se~~l~~vf~~a~~-----~----~P~ILf 508 (1086)
. ....++..++.+.. . .|+|||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 2 22334444443322 1 267999
Q ss_pred EccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEecc-----------CCCCCCCccccCCCCcceeeehhh
Q 001395 509 IDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT-----------NRPDSIEPALRRPGRLDREIEIDM 577 (1086)
Q Consensus 509 IDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatT-----------N~~d~idpaL~r~GRfdr~I~i~l 577 (1086)
|||+|.+. ......|+..++... ..++++++. |.++.+++++++ ||.. +.+
T Consensus 195 IDEi~~l~-----------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~-- 256 (368)
T 3uk6_A 195 IDEVHMLD-----------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VST-- 256 (368)
T ss_dssp EESGGGSB-----------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEE--
T ss_pred EhhccccC-----------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEe--
Confidence 99999883 456677888876632 234444433 357789999999 8865 677
Q ss_pred hhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 578 SFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 648 (1086)
Q Consensus 578 ~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~ 648 (1086)
++|+.+++.+|++..+...+..+++..++.++..+.+.+++++.++++.|...|..+..
T Consensus 257 ------------~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~ 315 (368)
T 3uk6_A 257 ------------TPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG 315 (368)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999998877778899999999999867899999999999988866543
No 74
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.73 E-value=8.4e-18 Score=203.14 Aligned_cols=203 Identities=23% Similarity=0.251 Sum_probs=141.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc--------
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-------- 482 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s-------- 482 (1086)
++++|++++++.+.+.+....+. +.+ ++.+++|+||||||||++|+++|+.++.++..+++..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence 57999999999998877554221 222 6778999999999999999999999999999998876543
Q ss_pred -ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc-------------CCCee
Q 001395 483 -QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-------------TDGVL 548 (1086)
Q Consensus 483 -~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~-------------~~~vi 548 (1086)
.|+|.....+...|..+....| ||||||+|.+.+.+. ......|+..|+.... ..+++
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ---------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 5677777778888888766666 999999999975432 1245667777765321 15689
Q ss_pred EEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc-----C-----ccccchHHHH
Q 001395 549 VIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG-----M-----EHSLLDSEVE 618 (1086)
Q Consensus 549 VIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~-----~-----~~~l~d~~l~ 618 (1086)
||+|||+++.++++|++ ||+ .|.+ +.|+.+++.+|++.++.. . ...+++..+.
T Consensus 227 iI~ttN~~~~l~~aL~~--R~~-vi~~--------------~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~ 289 (543)
T 3m6a_A 227 FIATANNLATIPGPLRD--RME-IINI--------------AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAIL 289 (543)
T ss_dssp EEEECSSTTTSCHHHHH--HEE-EEEC--------------CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHH
T ss_pred EEeccCccccCCHHHHh--hcc-eeee--------------CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHH
Confidence 99999999999999999 995 6777 999999999999987622 1 2345677888
Q ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHHH
Q 001395 619 YLSMATH-GFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 619 ~La~~t~-GfsgaDL~~L~~eA~~~a~ 644 (1086)
.++.... ....+++++.+..+...+.
T Consensus 290 ~l~~~~~~~~~vR~L~~~i~~~~~~aa 316 (543)
T 3m6a_A 290 DIIRYYTREAGVRSLERQLAAICRKAA 316 (543)
T ss_dssp HHHHHHCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCChhhchhHHHHHHHHHHHHHH
Confidence 8776443 3455666555544444433
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.72 E-value=1.5e-18 Score=194.92 Aligned_cols=256 Identities=18% Similarity=0.200 Sum_probs=165.5
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc---
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK--- 848 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~--- 848 (1086)
++++|.+...+.+.+.+... ...+.++||+||||||||++|++|+..+ +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 46889999988888877642 2346679999999999999999999865 689999999875321
Q ss_pred ------cccccHH---HHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------c
Q 001395 849 ------WVGESEK---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 910 (1086)
Q Consensus 849 ------~vGese~---~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~ 910 (1086)
..|.... .....|..|. .++||||||+.+ ....+..|+..|+... .
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-------------SPLMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-------------CHHHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-------------CHHHHHHHHHHHhcCEeeecCCcccc
Confidence 1111111 1123444443 459999999965 4567888999987542 1
Q ss_pred CCCEEEEEecCCC-------CCCChhhhCCCCcceEeecCCCCHHHH----HHHHHHHHhc----CCCC----CcccHHH
Q 001395 911 RVNVTVIAATNRP-------DKIDPALLRPGRFDRLLYVGPPNETDR----EEIFRIHLRK----IPCS----SDVNIRE 971 (1086)
Q Consensus 911 ~~~v~VI~aTN~p-------~~lD~aLlrpgRFd~~I~~~~P~~~eR----~~Il~~~l~~----~~l~----~d~~l~~ 971 (1086)
..++.||+|||++ ..+++.|.. ||. .+.+..|+..+| ..+++.+++. .+.. .+..++.
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~ 211 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDL 211 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHH
Confidence 2468999999986 124555555 654 444555555544 4466655533 2211 2223555
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchhHHHH-HHHHHHHHHhccccccccccccc
Q 001395 972 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKE-LSAKFQRLVHSNAEADESGYQLR 1050 (1086)
Q Consensus 972 La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1086)
|....-.-+.++++++++.|+..+ ....|+.+|+...+....+.....+.. ..+.+++.++..+...+.|+...
T Consensus 212 L~~~~wpGnvReL~~~l~~~~~~~-----~~~~i~~~~l~~~~~~~~~~~~~~l~~~~~~~~e~~~i~~~l~~~~gn~~~ 286 (304)
T 1ojl_A 212 LIHYDWPGNIRELENAIERAVVLL-----TGEYISERELPLAIAATPIKTEYSGEIQPLVDVEKEVILAALEKTGGNKTE 286 (304)
T ss_dssp HHHCCCSSHHHHHHHHHHHHHHHC-----CSSSBCGGGSCGGGC-------CCSSCCCHHHHHHHHHHHHHHTTTTCHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhC-----CCCcccHHhhhhhhccCCCccCCCcchhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 555542235689999999888755 234577666643322110000001112 35668888888888889999999
Q ss_pred cccccchh---HHHHHhh
Q 001395 1051 PSKSIGSN---MWTLIKS 1065 (1086)
Q Consensus 1051 ~~~~~g~~---L~~~~k~ 1065 (1086)
+++.+|++ ||++||+
T Consensus 287 aA~~Lgi~r~tl~~kl~~ 304 (304)
T 1ojl_A 287 AARQLGITRKTLLAKLSR 304 (304)
T ss_dssp HHHHHTSCHHHHHHHTCC
T ss_pred HHHHHCcCHHHHHHHHhC
Confidence 99999998 9999974
No 76
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=7.7e-17 Score=179.34 Aligned_cols=216 Identities=24% Similarity=0.354 Sum_probs=158.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhh----hHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc-ccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVK----STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNY 485 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~----~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s-~~~ 485 (1086)
++|+|++.+++.|...+.....+ ..+. +...+.++||+||||||||++|+++|+.++.+++.+++.++.. .|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~ 92 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLR--HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH--HHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhccccc--ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCcc
Confidence 46999999999999888653111 1110 1135678999999999999999999999999999999998876 566
Q ss_pred hhh-HHHHHHHHHHhh-----cCCCeEEEEccchhhccCCCCCCchh-HHHHHHHHHHHhhccc--------cCCCeeEE
Q 001395 486 GES-EQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEEL-SQRMVATLLNLMDGVC--------RTDGVLVI 550 (1086)
Q Consensus 486 Ges-e~~l~~vf~~a~-----~~~P~ILfIDEiD~l~~~r~~~~~~~-~~rv~~~Ll~lLd~l~--------~~~~viVI 550 (1086)
|.. ...++.+++.+. ...++||||||+|.+.+.....+.+. ...+...|+..|++.. ...++++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 93 GKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp GGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred CccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 543 445667666431 12357999999999987664433333 3345778888888642 23578888
Q ss_pred ec----cCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH----H-------H--ccCccccc
Q 001395 551 AA----TNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA----L-------L--SGMEHSLL 613 (1086)
Q Consensus 551 at----TN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~----~-------l--~~~~~~l~ 613 (1086)
++ ++.+..+++++++ ||+..+.+ ++|+.+++.+|++. + + ......++
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~--------------~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVEL--------------TALSAADFERILTEPHASLTEQYKALMATEGVNIAFT 236 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEEC--------------CCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEEC
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEc--------------CCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccC
Confidence 88 4577789999998 99977888 99999999999983 1 1 12223567
Q ss_pred hHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHH
Q 001395 614 DSEVEYLSMATH-------GFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 614 d~~l~~La~~t~-------GfsgaDL~~L~~eA~~~a~ 644 (1086)
+..++.++..+. +...+++.++++.+...+.
T Consensus 237 ~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 237 TDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhh
Confidence 888898988763 5678899998888765543
No 77
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=8.2e-17 Score=177.14 Aligned_cols=206 Identities=21% Similarity=0.245 Sum_probs=146.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc-cchhhH
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-NYGESE 489 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~-~~Gese 489 (1086)
..++|..+.++.+.+.... +...+...+..++.++||+||||||||++|+++|+.++.+|+.+++++.... ..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~--l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL--LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH--HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHH--HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 4678888777766654221 1233334456778899999999999999999999999999999988763322 223334
Q ss_pred HHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc-CCCeeEEeccCCCCCCCc-cccCCC
Q 001395 490 QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEP-ALRRPG 567 (1086)
Q Consensus 490 ~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~-~~~viVIatTN~~d~idp-aL~r~G 567 (1086)
..++.+|+.+....++||||||+|.+++.+..+ ......++..|...++.... ..+++||++||.++.+++ .+++
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~-- 187 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN-- 187 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--
Confidence 677888998887788999999999997655422 22345667777777776543 346789999999988887 5555
Q ss_pred CcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCC----cHHHHHHHHHHH
Q 001395 568 RLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF----VGADLAALCNEA 639 (1086)
Q Consensus 568 Rfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gf----sgaDL~~L~~eA 639 (1086)
||+..+.+ |+++. |.+|.+.+.... .+++..+..++..+.|| ..+++.++++.|
T Consensus 188 rf~~~i~~--------------p~l~~--r~~i~~i~~~~~--~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 188 AFSTTIHV--------------PNIAT--GEQLLEALELLG--NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp TSSEEEEC--------------CCEEE--HHHHHHHHHHHT--CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred ccceEEcC--------------CCccH--HHHHHHHHHhcC--CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 99888877 55544 334444333322 34678899999999997 566666666554
No 78
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=7.8e-17 Score=184.98 Aligned_cols=220 Identities=19% Similarity=0.288 Sum_probs=156.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHh--hhcC-CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccc-cchh
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTL--SSLG-LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-NYGE 487 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~--~~lg-i~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~-~~Ge 487 (1086)
.|+|++.+++.|...+......... .... ..++.++||+||||||||++|+++|+.++.+|+.+++.++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 5799999999999988654221110 0011 1367899999999999999999999999999999999998754 7777
Q ss_pred h-HHHHHHHHHHh----hcCCCeEEEEccchhhccCCCCCC---chhHHHHHHHHHHHhhccc-----------cCCCee
Q 001395 488 S-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVC-----------RTDGVL 548 (1086)
Q Consensus 488 s-e~~l~~vf~~a----~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~rv~~~Ll~lLd~l~-----------~~~~vi 548 (1086)
. ...+..+|+.+ ....++||||||+|.+.+.+.... .....+++..|+..|++.. ...+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 6 56677787765 334567999999999987765432 2233458999999999421 011234
Q ss_pred EEeccCC--------C----------CC-----------------------------------CCccccCCCCcceeeeh
Q 001395 549 VIAATNR--------P----------DS-----------------------------------IEPALRRPGRLDREIEI 575 (1086)
Q Consensus 549 VIatTN~--------~----------d~-----------------------------------idpaL~r~GRfdr~I~i 575 (1086)
+|+|||. . .. +.|+|.+ ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 5555554 1 11 5566665 88877777
Q ss_pred hhhhhhhhcccCCCCCCCHHHHHHHHHH----HHc---------cCccccchHHHHHHHHH--cCCCcHHHHHHHHHHHH
Q 001395 576 DMSFLFSLLKNSPAAVPSPAQRLEILHA----LLS---------GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAA 640 (1086)
Q Consensus 576 ~l~~~~~~~~~v~~~~Pd~~eR~~IL~~----~l~---------~~~~~l~d~~l~~La~~--t~GfsgaDL~~L~~eA~ 640 (1086)
++|+.+++.+|++. ++. .....+++..++.|+.. ...+..++|.+++..+.
T Consensus 254 --------------~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~ 319 (363)
T 3hws_A 254 --------------NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAAL 319 (363)
T ss_dssp --------------CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHH
Confidence 99999999999986 221 22234678888888864 45667799999999998
Q ss_pred HHHHHHh
Q 001395 641 LVCLRRY 647 (1086)
Q Consensus 641 ~~a~rr~ 647 (1086)
..++.+.
T Consensus 320 ~~~l~~~ 326 (363)
T 3hws_A 320 LDTMYDL 326 (363)
T ss_dssp HHHHHST
T ss_pred HHHHHhc
Confidence 8887654
No 79
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=5.3e-16 Score=162.49 Aligned_cols=202 Identities=20% Similarity=0.204 Sum_probs=151.3
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCC
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGP 843 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~s 843 (1086)
.++..|++++|.+..++.+.+++... ...+++|+||||||||++|+++++.+ ...++.+++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 45668999999999999998887631 23359999999999999999999875 4678888876
Q ss_pred ccccccccccHHHHHHHHHHHH------hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 844 ELFSKWVGESEKAVRSLFAKAR------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~------~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
+..+ ...++..+.... ...+.||||||+|.+ ....++.|+..++.. ..++.+|
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~l~~~l~~~--~~~~~~i 136 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-------------TADAQAALRRTMEMY--SKSCRFI 136 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHT--TTTEEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhc-------------CHHHHHHHHHHHHhc--CCCCeEE
Confidence 6432 222333333322 256889999999976 334566777777753 4578899
Q ss_pred EecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 918 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 996 (1086)
Q Consensus 918 ~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~ 996 (1086)
++||.++.+++++.+ ||. .+.+++|+.+++.++++.++...+.. .+..+..+++.+.| +.+.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 999999999999998 887 89999999999999999888654443 33457778888876 5566666666665433
Q ss_pred HHhcCCCCCCHHHHHHHHH
Q 001395 997 EENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 997 ~~~~~~~~It~~d~~~al~ 1015 (1086)
..|+.+|++.++.
T Consensus 212 ------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ------EVVDADTIYQITA 224 (226)
T ss_dssp ------SCBCHHHHHHHHH
T ss_pred ------ceecHHHHHHHhc
Confidence 5799999998875
No 80
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.71 E-value=2.2e-16 Score=178.90 Aligned_cols=193 Identities=17% Similarity=0.205 Sum_probs=152.7
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhh
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ges 488 (1086)
.|++++|.+..++.+.+.+..... .-.+..++||+||||||||++|+++|+.++.+|+.+++..+. .
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~ 93 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------K 93 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------S
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------c
Confidence 568999999999999998876511 123567899999999999999999999999999999987663 2
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc----------------CCCeeEEec
Q 001395 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR----------------TDGVLVIAA 552 (1086)
Q Consensus 489 e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~----------------~~~viVIat 552 (1086)
...+..++.. ...+++|||||||.+. ......|+..|+...- ..++++|++
T Consensus 94 ~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 94 SGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp HHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred hhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 2334444443 2456799999999883 4556777777765321 124899999
Q ss_pred cCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHH
Q 001395 553 TNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 632 (1086)
Q Consensus 553 TN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL 632 (1086)
||+...+++++++ ||+..+.+ +.|+.+++.+|++.++...+..+++..++.++..+.| ..+++
T Consensus 161 tn~~~~l~~~L~~--R~~~~i~l--------------~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l 223 (338)
T 3pfi_A 161 TTRAGMLSNPLRD--RFGMQFRL--------------EFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIA 223 (338)
T ss_dssp ESCGGGSCHHHHT--TCSEEEEC--------------CCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHH
T ss_pred CCCccccCHHHHh--hcCEEeeC--------------CCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHH
Confidence 9999999999998 99888988 9999999999999999887777788889999996666 56788
Q ss_pred HHHHHHHHHHHH
Q 001395 633 AALCNEAALVCL 644 (1086)
Q Consensus 633 ~~L~~eA~~~a~ 644 (1086)
.++++.+...+.
T Consensus 224 ~~~l~~~~~~a~ 235 (338)
T 3pfi_A 224 LRLLKRVRDFAD 235 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887765553
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.70 E-value=3e-16 Score=214.80 Aligned_cols=442 Identities=15% Similarity=0.187 Sum_probs=227.9
Q ss_pred CCCeEEEEcCCCChHHHHH-HHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhh---------------cCCCeE
Q 001395 443 PTKGVLLHGPPGTGKTSLA-RLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSAS---------------QSAPAV 506 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLA-ralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~---------------~~~P~I 506 (1086)
.++++||+||||||||++| +++++..+..++.++++...+. ..+...++... .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 4579999999999999999 5555555778888887665432 23444444321 234579
Q ss_pred EEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-c-------CCCeeEEeccCCCC-----CCCccccCCCCcceee
Q 001395 507 VFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-R-------TDGVLVIAATNRPD-----SIEPALRRPGRLDREI 573 (1086)
Q Consensus 507 LfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-~-------~~~viVIatTN~~d-----~idpaL~r~GRfdr~I 573 (1086)
|||||++.. ..+..+.+...+++.++++. .++. . -.++.+|+|||++. .++++++| || ..+
T Consensus 1340 lFiDEinmp--~~d~yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLP--KLDKYGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp EEEETTTCS--CCCSSSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred EEecccccc--cccccCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 999999864 34444555455555555432 1111 1 13589999999995 79999999 88 678
Q ss_pred ehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccch----------HH---HHHHHHH-------cCCCcHHHHH
Q 001395 574 EIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLD----------SE---VEYLSMA-------THGFVGADLA 633 (1086)
Q Consensus 574 ~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d----------~~---l~~La~~-------t~GfsgaDL~ 633 (1086)
.+ +.|+.+++..|+..+++..-....+ .. ...+... ..-|+.+|+.
T Consensus 1414 ~i--------------~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLs 1479 (2695)
T 4akg_A 1414 YL--------------GYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELT 1479 (2695)
T ss_dssp EC--------------CCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHH
T ss_pred Ee--------------CCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHH
Confidence 88 9999999999999887643211000 00 1111111 2357899999
Q ss_pred HHHHHHHHHHHHHhccccccccc--cccccccccccCCccccccccccccccccccccccccCCCCCCCCccccccCCcc
Q 001395 634 ALCNEAALVCLRRYSKIQTSSDV--LHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLP 711 (1086)
Q Consensus 634 ~L~~eA~~~a~rr~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 711 (1086)
++++...+. .... ...+.... ++.++....+.++...+-+..++...+......+..............+...
T Consensus 1480 rv~qGll~~-~~~~-~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~d--- 1554 (2695)
T 4akg_A 1480 RLVRGVYTA-INTG-PRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSG--- 1554 (2695)
T ss_dssp HHHHHHHHH-HHTS-SCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEES---
T ss_pred HHHHHHHhc-Cchh-hhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeee---
Confidence 988765432 1110 00000111 1222222222222222222222222222221111111000000000000000
Q ss_pred cccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhHHHHHHHHH
Q 001395 712 LRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAV 791 (1086)
Q Consensus 712 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i 791 (1086)
. -......++.+++.+.+... +.+.-.+... -+++--+++.+.+.+
T Consensus 1555 ----------------------f---~~~~Y~~v~~~~l~~~l~~~----l~~yn~~~~~---m~LVlF~dai~Hi~R-- 1600 (2695)
T 4akg_A 1555 ----------------------L---LSLDFKEVNKTDLVNFIEER----FKTFCDEELE---VPMVIHESMVDHILR-- 1600 (2695)
T ss_dssp ----------------------S---SSSSCEECCHHHHHHHHHHH----HHHHHHHSCC---CCCCCCHHHHHHHHH--
T ss_pred ----------------------c---CCCcceecCHHHHHHHHHHH----HHHHHhhcCC---ceeeeHHHHHHHHHH--
Confidence 0 00011223333332222111 1111101101 123333333333322
Q ss_pred hcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHH-HhcCCe
Q 001395 792 EWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA-RANAPS 870 (1086)
Q Consensus 792 ~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A-~~~~p~ 870 (1086)
..|+-..+..++||+|.+|+||++++|..|...+..++.+..+.-++ ..+....++.++.+| ..+.|.
T Consensus 1601 ---------I~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~ 1669 (2695)
T 4akg_A 1601 ---------IDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRT 1669 (2695)
T ss_dssp ---------HHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCE
T ss_pred ---------HHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCce
Confidence 22222345667999999999999999999999999999998665332 345677899999988 456788
Q ss_pred EEEEecCch-----------hhhhcCCCCC--CCCccHHHHHHHHHHHh--ccc-c-------------CCCEEEEEecC
Q 001395 871 IIFFDEIDG-----------LAAIRGKESD--GVSVSDRVMSQLLVELD--GLH-Q-------------RVNVTVIAATN 921 (1086)
Q Consensus 871 ILflDEid~-----------L~~~r~~~~~--~~~~~~~v~~~LL~~Ld--~~~-~-------------~~~v~VI~aTN 921 (1086)
+++|+|.+- |... |.-.+ ..+..+.+++.+-.... +.. . +.+.-||.+-+
T Consensus 1670 vFL~tD~qi~~e~FLE~IN~lL~s-GEVP~LF~~dE~~~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mS 1748 (2695)
T 4akg_A 1670 CLIIDESNILETAFLERMNTLLAN-ADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTIC 1748 (2695)
T ss_dssp EEEEETTTCCSHHHHHHHHHHHHS-SSCTTTSCTHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEES
T ss_pred EEEEeccccccHHHHHHHHHHHcc-CCCCCCCCHHHHHHHHHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEEC
Confidence 888988542 1111 11100 00111233333332221 111 0 01334444433
Q ss_pred CCCC-------CChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC
Q 001395 922 RPDK-------IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS 964 (1086)
Q Consensus 922 ~p~~-------lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~ 964 (1086)
.... --|+|.. ++ .+--|..-+.+....+-+.++.++++.
T Consensus 1749 P~g~~fr~R~r~fPaLvn--~c-tIdWf~~Wp~eAL~~Va~~fl~~~~~~ 1795 (2695)
T 4akg_A 1749 DPTNNKSSAMISSPALFN--RC-IINWMGDWDTKTMSQVANNMVDVIPME 1795 (2695)
T ss_dssp CTTSHHHHHHHHSHHHHH--HS-EEEECCSCCHHHHHHHHHHHSCSCCCC
T ss_pred CCChHHHHHHHhChHhhc--ce-eEeecCCCCHHHHHHHHHHHhhccCcc
Confidence 3221 1366665 43 355667777888888888888877654
No 82
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.69 E-value=1.3e-16 Score=187.96 Aligned_cols=220 Identities=16% Similarity=0.271 Sum_probs=156.0
Q ss_pred CCccccccc-cchhH--HHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEe
Q 001395 770 PKVKWEDVG-GQREV--KTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVK 841 (1086)
Q Consensus 770 p~v~~~di~-G~e~v--k~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~ 841 (1086)
+..+|++++ |.... ...+......+ + . +.+++||||||||||++|+++++++ +.+++.++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 456888877 64433 33333333321 1 2 5679999999999999999999987 88999999
Q ss_pred CCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecC
Q 001395 842 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 921 (1086)
Q Consensus 842 ~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN 921 (1086)
+.++...+.+.........|.......++||||||+|.+.. ....+..|+..++.....+..+||++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~-----------~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG-----------KTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS-----------CHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC-----------ChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 88875544433222222234444333688999999998742 2245666777776654444455555444
Q ss_pred CCCC---CChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 922 RPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 922 ~p~~---lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
.+.. +++++++ ||. .++.+++|+.++|.+|++..++..++. .+..+..|+..+.| +.+++.++++.+...|
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 4544 7899998 886 789999999999999999988754432 23347888888876 8999999999998887
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhC
Q 001395 996 IEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 996 ~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
... ...|+.+++.+++....
T Consensus 314 ~~~---~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETT---GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHS---SSCCCHHHHHHHTSTTT
T ss_pred HHh---CCCCCHHHHHHHHHHHh
Confidence 644 34699999999998765
No 83
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.69 E-value=4.3e-16 Score=176.73 Aligned_cols=230 Identities=21% Similarity=0.248 Sum_probs=142.7
Q ss_pred HHhhCchhhhhhhhhcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh
Q 001395 754 RMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA 833 (1086)
Q Consensus 754 l~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~ 833 (1086)
+..+.|+.++. ...+..+|++++|++.+++.+...... ....++||+||||||||++|++++..+
T Consensus 5 ~~~~~~~~~~~--~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 5 VARLQPSASGA--KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp ---------------CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ccccCCcccCC--CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhC
Confidence 34444444443 234678999999999987765443321 123469999999999999999999987
Q ss_pred CC-------c--------------------------EEEEeCCccccccccccHHHHHHHHHHH---------HhcCCeE
Q 001395 834 GL-------N--------------------------FLAVKGPELFSKWVGESEKAVRSLFAKA---------RANAPSI 871 (1086)
Q Consensus 834 ~~-------~--------------------------fi~v~~sel~~~~vGese~~ir~lf~~A---------~~~~p~I 871 (1086)
+. + ++.+..........|... +...+..+ ....++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~v 147 (350)
T 1g8p_A 70 PEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGY 147 (350)
T ss_dssp CCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEE
T ss_pred ccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCE
Confidence 63 2 221111100001111100 01122211 1123679
Q ss_pred EEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEEEEEecCCCC-CCChhhhCCCCcceE
Q 001395 872 IFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRL 939 (1086)
Q Consensus 872 LflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~VI~aTN~p~-~lD~aLlrpgRFd~~ 939 (1086)
|||||+|.+ ....++.|+..|+... ...++++|+|||..+ .+++++++ ||+..
T Consensus 148 l~iDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~ 212 (350)
T 1g8p_A 148 LYIDECNLL-------------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLS 212 (350)
T ss_dssp EEETTGGGS-------------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEE
T ss_pred EEEeChhhC-------------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceE
Confidence 999999965 4567888888887421 123789999999754 89999999 99988
Q ss_pred eecCCC-CHHHHHHHHHHHHh-------------------------------cCCCCCcccHHHHHHHcCC---CcHHHH
Q 001395 940 LYVGPP-NETDREEIFRIHLR-------------------------------KIPCSSDVNIRELACLSEG---CTGADI 984 (1086)
Q Consensus 940 I~~~~P-~~~eR~~Il~~~l~-------------------------------~~~l~~d~~l~~La~~t~g---~sgadl 984 (1086)
+.++.| +.+++.+|++.+++ ...+ .+..++.|+....+ -+.|.+
T Consensus 213 ~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHH
Confidence 999999 56777788866321 1122 23335555555443 256999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 985 SLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 985 ~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
.++++.|...|..+. ...|+.+|+..++..+.
T Consensus 292 ~~ll~~a~~~A~~~~--~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 292 LTLLRSARALAALEG--ATAVGRDHLKRVATMAL 323 (350)
T ss_dssp HHHHHHHHHHHHHTT--CSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCcCCHHHHHHHHHHHH
Confidence 999999888886654 45699999999887653
No 84
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.68 E-value=3.9e-16 Score=176.08 Aligned_cols=218 Identities=17% Similarity=0.234 Sum_probs=151.7
Q ss_pred CCccccccc-cch--hHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCC
Q 001395 770 PKVKWEDVG-GQR--EVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGP 843 (1086)
Q Consensus 770 p~v~~~di~-G~e--~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~s 843 (1086)
+..+|++++ |.. .+...++..+..+ ...+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456788886 533 3344444444432 1245679999999999999999999988 8999999998
Q ss_pred ccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 844 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
++...+.+.........|.... ..++||||||+|.+.. ....+..++..++........+|+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~-----------~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG-----------KERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT-----------CHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC-----------ChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 8765554443322223333333 2477999999998742 224555666666655445556777777776
Q ss_pred C---CCChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH---
Q 001395 924 D---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAIS--- 994 (1086)
Q Consensus 924 ~---~lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~--- 994 (1086)
. .+++++.+ ||+ .++.+++ +.+++.+|++.+++..++. .+..++.|+..+ | +.+++.++++.++..
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~ 217 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFE 217 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHH
Confidence 5 68999998 886 7899999 9999999999998765543 344478888888 5 788999998887765
Q ss_pred HHHHhcCCCCC-CHHHHHHHHHh
Q 001395 995 AIEENLDASRI-TMQHLKTAIRH 1016 (1086)
Q Consensus 995 A~~~~~~~~~I-t~~d~~~al~~ 1016 (1086)
++. ......| +.+++.+++..
T Consensus 218 ~l~-~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 218 GLE-RKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-cccccCCCCHHHHHHHHHH
Confidence 111 0012347 77888877765
No 85
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=2.4e-16 Score=177.58 Aligned_cols=201 Identities=16% Similarity=0.158 Sum_probs=141.1
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcccccc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 849 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~ 849 (1086)
.+.+|++++|++++++.+++++.. ...+..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 445899999999999999988862 23456688889999999999999999999999999987731
Q ss_pred ccccHHHHHHHHHHHHhc-----CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 850 VGESEKAVRSLFAKARAN-----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 850 vGese~~ir~lf~~A~~~-----~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
...++..+..+... .++||||||+|.+.. ...++.|+..|+.. ..++.+|++||+++
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY--SSNCSIIITANNID 147 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH--GGGCEEEEEESSGG
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC--CCCcEEEEEeCCcc
Confidence 34555555543332 578999999997731 45677888888754 34688999999999
Q ss_pred CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHH-------hcCCCC-Cc-ccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 925 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-------RKIPCS-SD-VNIRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 925 ~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l-------~~~~l~-~d-~~l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
.+++++.+ ||. ++.|++|+.++|.+|++.++ ...++. .+ ..++.+++.+.| +.+++.+.++.++
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~--- 220 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS--- 220 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG---
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh---
Confidence 99999999 994 79999999999877655443 222332 23 557788888777 3344444444433
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 001395 996 IEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 996 ~~~~~~~~~It~~d~~~al~ 1015 (1086)
....|+.+++..++.
T Consensus 221 -----~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 -----SKGVLDAGILSLVTN 235 (324)
T ss_dssp -----GGTCBCC--------
T ss_pred -----ccCCCCHHHHHHHhC
Confidence 123466666655443
No 86
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=3e-16 Score=180.83 Aligned_cols=238 Identities=21% Similarity=0.244 Sum_probs=153.9
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHH-----------------hhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcE
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFK-----------------RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF 837 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~-----------------~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~f 837 (1086)
++|+|++.+++.|..++........... .-...++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999988854333222100 11234567799999999999999999999999999
Q ss_pred EEEeCCccc-ccccccc-HHHHHHHHHHH----HhcCCeEEEEecCchhhhhcCCCCCC-CCccHHHHHHHHHHHhccc-
Q 001395 838 LAVKGPELF-SKWVGES-EKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLH- 909 (1086)
Q Consensus 838 i~v~~sel~-~~~vGes-e~~ir~lf~~A----~~~~p~ILflDEid~L~~~r~~~~~~-~~~~~~v~~~LL~~Ld~~~- 909 (1086)
+.+++..+. ..|+|+. ...+..++..+ ....++||||||+|.+...+...... ......+++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 4566654 44455565543 23467899999999987664322111 1122358999999998541
Q ss_pred ------------------cCCCEEEEEecCCC-----------------------------------------CCCChhh
Q 001395 910 ------------------QRVNVTVIAATNRP-----------------------------------------DKIDPAL 930 (1086)
Q Consensus 910 ------------------~~~~v~VI~aTN~p-----------------------------------------~~lD~aL 930 (1086)
...++++|++||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456788887621 1256777
Q ss_pred hCCCCcceEeecCCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHH
Q 001395 931 LRPGRFDRLLYVGPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACLSE--GCTGADISLICREAAIS 994 (1086)
Q Consensus 931 lrpgRFd~~I~~~~P~~~eR~~Il~~----~l~-------~~~l~---~d~~l~~La~~t~--g~sgadl~~l~~~A~~~ 994 (1086)
+. ||+.++.|++++.++...|++. +++ ..... .+..++.|+.... ....|+++++++.++..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 77 9999999999999999998862 111 11111 2333666776643 35689999999999988
Q ss_pred HHHHhcCC----CCCCHHHHHHHH
Q 001395 995 AIEENLDA----SRITMQHLKTAI 1014 (1086)
Q Consensus 995 A~~~~~~~----~~It~~d~~~al 1014 (1086)
++.+.... ..|+.+++..+.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHhhccCCCCCEEEEeHHHhcCCC
Confidence 87765321 248888887543
No 87
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.68 E-value=1.2e-15 Score=174.45 Aligned_cols=224 Identities=19% Similarity=0.191 Sum_probs=159.3
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEeC
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKG 842 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~~ 842 (1086)
...++++|.+..++.+..++...+ ....+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 344889999999999888775321 12456789999999999999999999887 889999998
Q ss_pred Cccccc----------------cccccHHH-HHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHH
Q 001395 843 PELFSK----------------WVGESEKA-VRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 904 (1086)
Q Consensus 843 sel~~~----------------~vGese~~-ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~ 904 (1086)
....+. ..|..... ...++..... ..|+||||||+|.+...+ .....+..++..
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRI 158 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhc
Confidence 764221 11222333 3444444433 348899999999885421 023455555555
Q ss_pred HhccccCCCEEEEEecCCC---CCCChhhhCCCCcce-EeecCCCCHHHHHHHHHHHHhc--CCC-CCcccHHHHHHHcC
Q 001395 905 LDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRK--IPC-SSDVNIRELACLSE 977 (1086)
Q Consensus 905 Ld~~~~~~~v~VI~aTN~p---~~lD~aLlrpgRFd~-~I~~~~P~~~eR~~Il~~~l~~--~~l-~~d~~l~~La~~t~ 977 (1086)
++......++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.++++.+++. .+. ..+..++.+++.+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 5432214578999999988 678999998 8874 8999999999999999988864 221 23344777888777
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 978 ---GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 978 ---g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
| +.+.+.++|+.|+..|..+. ...|+.+|+..++..+
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRR--EERVRREHVYSARAEI 276 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTT--CSCBCHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHH
Confidence 6 56788899999988776543 4679999999998775
No 88
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.67 E-value=1.6e-15 Score=160.60 Aligned_cols=202 Identities=20% Similarity=0.256 Sum_probs=150.5
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCc-------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 836 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~------------- 836 (1086)
.+..|++++|.+..++.+.+.+.. ...+..++|+||||||||++|+++++..+..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 445788999999999999888753 1234569999999999999999999876432
Q ss_pred -----------EEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 837 -----------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 837 -----------fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
++.+.... ......++.++..+. ...+.+|||||+|.+ ....++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-------------~~~~~~~l 146 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNAL 146 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-------------cHHHHHHH
Confidence 22222211 112334555555443 235789999999965 45677888
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
+..++.. ..++.+|++||++..+++++.+ |+ ..+.+++++.++..++++.++.+.+.. .+..++.+++.+.| +
T Consensus 147 ~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~ 220 (250)
T 1njg_A 147 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 220 (250)
T ss_dssp HHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C
T ss_pred HHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C
Confidence 8888743 4578999999999999999998 76 689999999999999999988765543 34457888999987 7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
.+.+.++++.|+..+ ...|+.+++++++
T Consensus 221 ~~~~~~~~~~~~~~~------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 221 LRDALSLTDQAIASG------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHTTT------TSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc------CceecHHHHHHHh
Confidence 788889888875432 3479999998775
No 89
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.67 E-value=1.2e-15 Score=162.78 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=144.8
Q ss_pred Cccccccccc---hhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCc
Q 001395 771 KVKWEDVGGQ---REVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE 844 (1086)
Q Consensus 771 ~v~~~di~G~---e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~se 844 (1086)
..+|++++|. +.+.+.+..++.+ ..+.+++|+||||||||++|++++.++ +.+++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3578888762 3455555554432 245679999999999999999999876 47889999888
Q ss_pred cccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCE-EEEEecCCC
Q 001395 845 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV-TVIAATNRP 923 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v-~VI~aTN~p 923 (1086)
+...+... +. ....+.+|||||+|.+.. ....+..|+..++.......+ +|+++++.+
T Consensus 91 ~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~-----------~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTAL--------LE--GLEQFDLICIDDVDAVAG-----------HPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGG--------GT--TGGGSSEEEEETGGGGTT-----------CHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHH--------HH--hccCCCEEEEeccccccC-----------CHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 65443211 11 114467999999998732 223355566666554444444 444444444
Q ss_pred C---CCChhhhCCCCcc--eEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 924 D---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 924 ~---~lD~aLlrpgRFd--~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~ 997 (1086)
+ .+++++.+ ||. .++.+++|+.+++.++++.+++..+.. .+..++.++..+.| +.+++.++++.+...|..
T Consensus 150 ~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 150 MEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp TTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 3 45688988 886 899999999999999999998765543 33457778888876 789999999999888765
Q ss_pred HhcCCCCCCHHHHHHHHH
Q 001395 998 ENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 998 ~~~~~~~It~~d~~~al~ 1015 (1086)
+. ..|+.+++++++.
T Consensus 227 ~~---~~It~~~v~~~l~ 241 (242)
T 3bos_A 227 HQ---RKLTIPFVKEMLR 241 (242)
T ss_dssp HT---CCCCHHHHHHHHT
T ss_pred hC---CCCcHHHHHHHhh
Confidence 53 5699999998874
No 90
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.67 E-value=1.2e-15 Score=171.39 Aligned_cols=190 Identities=21% Similarity=0.305 Sum_probs=146.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhh
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ges 488 (1086)
.+++++|.+..++.+.+.+..... .-..+.++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------ 76 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------ 76 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------
Confidence 467899999999999988865411 1134678999999999999999999999999999999877632
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc----------------cCCCeeEEec
Q 001395 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIAA 552 (1086)
Q Consensus 489 e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~----------------~~~~viVIat 552 (1086)
...+...|..+ ...+++|||||+|.+. ......|+..|+... ...++.+|++
T Consensus 77 ~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 77 PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 22233333321 2456799999999883 334556677776532 1135889999
Q ss_pred cCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHH
Q 001395 553 TNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 632 (1086)
Q Consensus 553 TN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL 632 (1086)
||.++.+++++++ ||+..+.+ +.|+.+++.++++.++...+..+++..++.++..+.| .++++
T Consensus 145 t~~~~~~~~~l~~--R~~~~i~l--------------~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l 207 (324)
T 1hqc_A 145 TTRPGLITAPLLS--RFGIVEHL--------------EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVA 207 (324)
T ss_dssp ESCCSSCSCSTTT--TCSCEEEC--------------CCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHH
T ss_pred CCCcccCCHHHHh--cccEEEec--------------CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHH
Confidence 9999999999988 99878888 8999999999999999887777888899999999876 45777
Q ss_pred HHHHHHHH
Q 001395 633 AALCNEAA 640 (1086)
Q Consensus 633 ~~L~~eA~ 640 (1086)
.++++.+.
T Consensus 208 ~~~l~~~~ 215 (324)
T 1hqc_A 208 KRLFRRVR 215 (324)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77776553
No 91
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.67 E-value=9e-16 Score=176.91 Aligned_cols=234 Identities=17% Similarity=0.244 Sum_probs=152.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHh------------------hhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTL------------------SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL 472 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~------------------~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~ 472 (1086)
+.|+|++.+++.|...+.....+... ..-...++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46899999999999888533111100 011234577899999999999999999999999999
Q ss_pred EEEcccccc-cccchhh-HHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCc---hhHHHHHHHHHHHhhccc-
Q 001395 473 FTVNGPEVV-SQNYGES-EQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGE---ELSQRMVATLLNLMDGVC- 542 (1086)
Q Consensus 473 i~I~~s~l~-s~~~Ges-e~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~---~~~~rv~~~Ll~lLd~l~- 542 (1086)
+.+++..+. ..+.|+. +..+..++..+. ...++||||||+|.+...+..... .....+...|+.+|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998876 3455653 445566665432 235679999999999765432211 112247888999998531
Q ss_pred ------------------cCCCeeEEeccCCCCCCCccccCCCCcce----------------------------eeehh
Q 001395 543 ------------------RTDGVLVIAATNRPDSIEPALRRPGRLDR----------------------------EIEID 576 (1086)
Q Consensus 543 ------------------~~~~viVIatTN~~d~idpaL~r~GRfdr----------------------------~I~i~ 576 (1086)
...++++|+++| .+.+++++.+ ||++ ...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLI 257 (376)
T ss_dssp C---------------CEECTTCEEEEEEC-CTTHHHHTTT--SCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCC
T ss_pred ecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--HhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCC
Confidence 125577888887 5667777776 6542 11123
Q ss_pred hhhhhhhcccCCCCCCCHHHHHHHHHH----HH---------ccCccccchHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Q 001395 577 MSFLFSLLKNSPAAVPSPAQRLEILHA----LL---------SGMEHSLLDSEVEYLSMATH--GFVGADLAALCNEAAL 641 (1086)
Q Consensus 577 l~~~~~~~~~v~~~~Pd~~eR~~IL~~----~l---------~~~~~~l~d~~l~~La~~t~--GfsgaDL~~L~~eA~~ 641 (1086)
.+++.++...+.+++++.++..+|++. ++ ......+++..++.++.... ....+++.+++..+..
T Consensus 258 p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 258 PELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 345555556677799999999999962 21 12234567888899988754 3567899999998888
Q ss_pred HHHHHh
Q 001395 642 VCLRRY 647 (1086)
Q Consensus 642 ~a~rr~ 647 (1086)
.++.+.
T Consensus 338 ~~~~~~ 343 (376)
T 1um8_A 338 DIMFDL 343 (376)
T ss_dssp HHHHTG
T ss_pred HHHhhc
Confidence 777654
No 92
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=5.2e-16 Score=186.57 Aligned_cols=225 Identities=17% Similarity=0.201 Sum_probs=145.8
Q ss_pred cCCccccccccchhHHHHHHHHHhcc-hhcHHHHHhhCCC---CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWP-QKHQEAFKRIGTR---PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 844 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~-l~~~~~~~~lg~~---~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se 844 (1086)
..+.+|++++|++.+++.|++++... ...+..++..|.. +++++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34568999999999999999998742 2222333333332 5678999999999999999999999999999999998
Q ss_pred cccccccccHH-------HHHHHHHHH-----HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCC
Q 001395 845 LFSKWVGESEK-------AVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 912 (1086)
Q Consensus 845 l~~~~vGese~-------~ir~lf~~A-----~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~ 912 (1086)
+...+..+..- .++.+|..+ ....++||||||+|.+.... ...++.|+..++.. ..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----------~~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----------RGGVGQLAQFCRKT--ST 180 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----------TTHHHHHHHHHHHC--SS
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh----------HHHHHHHHHHHHhc--CC
Confidence 75543221100 022233333 23568899999999885321 12355666666532 22
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 991 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A 991 (1086)
.+++|+++.....+. .+. |+...+.|++|+.+++.++++..+.+.++. .+..+..+++.+.| |++.+++..
T Consensus 181 ~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHHHH
T ss_pred CEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHH
Confidence 344444333333343 343 455689999999999999998877543322 23348889988877 555555544
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 992 AISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 992 ~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
...+. ....|+.+++..++...
T Consensus 253 ~~~~~----~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 253 STIST----TTKTINHENINEISKAW 274 (516)
T ss_dssp THHHH----HSSCCCTTHHHHHHHHH
T ss_pred HHHHh----cCCCCchHHHHHHHHhh
Confidence 33332 23467878877776543
No 93
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=4.7e-16 Score=184.67 Aligned_cols=206 Identities=21% Similarity=0.275 Sum_probs=145.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v 840 (1086)
+-.+++++|.++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+|+.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 45789999999999988887653 345679999999999999999999986 7889998
Q ss_pred eCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec
Q 001395 841 KGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920 (1086)
Q Consensus 841 ~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT 920 (1086)
++. ++|.|+.+..++.+|..+....++||||| . ....++.|+..|+ ...+++|++|
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~---------------~~~a~~~L~~~L~----~g~v~vI~at 298 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--A---------------AIDASNILKPSLA----RGELQCIGAT 298 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C-----------------------CCCTT----SSSCEEEEEC
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--C---------------chhHHHHHHHhhc----CCCEEEEecC
Confidence 887 77889999999999999998889999999 1 1123344444443 5589999999
Q ss_pred CCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC----CC-CcccHHHHHHHcCCCc-----HHHHH
Q 001395 921 NRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CS-SDVNIRELACLSEGCT-----GADIS 985 (1086)
Q Consensus 921 N~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~----l~-~d~~l~~La~~t~g~s-----gadl~ 985 (1086)
|.++ .+|+++.| ||. .|.|+.|+.+++.+|++.++.++. .. .+..+..++..+.+|. .....
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 9997 68999999 997 599999999999999998876632 22 3344666776665554 34677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 986 LICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 986 ~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
.++.+|+..+..+. ...+-..++++..+..+
T Consensus 376 ~ll~~a~~~~~~~~-~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 376 DLIDEAGSKVRLRS-FTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHT-TSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCchHHHHHHHHHHHH
Confidence 88888776665443 23444556666655544
No 94
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.65 E-value=6.9e-16 Score=172.23 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=145.9
Q ss_pred ccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccc--
Q 001395 774 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK-- 848 (1086)
Q Consensus 774 ~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~-- 848 (1086)
.++++|++.+++.+...+...... +. -..++...++|+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~---~~-~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAG---LK-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHT---CS-CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcC---CC-CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 457889999999999888642100 00 001223469999999999999999999987 667999998776432
Q ss_pred ---cc-------cccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhcccc--------
Q 001395 849 ---WV-------GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-------- 910 (1086)
Q Consensus 849 ---~v-------Gese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~-------- 910 (1086)
++ |.... ..+.........+||||||+|.+ ...+++.|+..|+...-
T Consensus 92 ~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp HHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSCEE
T ss_pred HHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCCEE
Confidence 11 21110 12333334455689999999965 56789999999975421
Q ss_pred -CCCEEEEEecCC--------------------------CCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC--
Q 001395 911 -RVNVTVIAATNR--------------------------PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-- 961 (1086)
Q Consensus 911 -~~~v~VI~aTN~--------------------------p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~-- 961 (1086)
..++++|+|||. ...++++|++ ||+.++.|++|+.+++..|++.++++.
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 137889999998 4467889997 999999999999999999999877542
Q ss_pred -----CCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHh
Q 001395 962 -----PCS---SDVNIRELACLSE--GCTGADISLICREAAISAIEEN 999 (1086)
Q Consensus 962 -----~l~---~d~~l~~La~~t~--g~sgadl~~l~~~A~~~A~~~~ 999 (1086)
... .+..++.|+...- .+++++|++++++++..++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 111 2334666776654 5678999999999888776554
No 95
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.64 E-value=2.1e-15 Score=189.30 Aligned_cols=223 Identities=17% Similarity=0.218 Sum_probs=165.1
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEEe
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVK 841 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v~ 841 (1086)
-.|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4789999999998888776642 356679999999999999999999876 67788888
Q ss_pred CCccc--cccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEe
Q 001395 842 GPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 919 (1086)
Q Consensus 842 ~sel~--~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~a 919 (1086)
...+. .++.|+.++.++.+|..+....++||||||+|.+.+.+.... ....+. +.|.......++.+|++
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~----~~~~~~----~~L~~~l~~~~~~~I~a 321 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----GQVDAA----NLIKPLLSSGKIRVIGS 321 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS----CHHHHH----HHHSSCSSSCCCEEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc----chHHHH----HHHHHHHhCCCeEEEEE
Confidence 87776 468899999999999999888899999999999976543211 122223 33334444568899999
Q ss_pred cCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC----CCC-CcccHHHHHHHcCCC-----cHHHH
Q 001395 920 TNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCS-SDVNIRELACLSEGC-----TGADI 984 (1086)
Q Consensus 920 TN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~----~l~-~d~~l~~La~~t~g~-----sgadl 984 (1086)
||.++ .+|+++.+ ||+ .+.|+.|+.+++.+|++.+.+.+ .+. .+..+..++..+.+| ....+
T Consensus 322 t~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp ECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred eCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 98653 57899999 997 79999999999999999877542 221 233466666665543 44577
Q ss_pred HHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhC
Q 001395 985 SLICREAAISAIEEN--LDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 985 ~~l~~~A~~~A~~~~--~~~~~It~~d~~~al~~~~ 1018 (1086)
..++.+|+..+.... .....|+.+|+..++..+.
T Consensus 399 i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 888888876554421 1245799999999988754
No 96
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.63 E-value=9.6e-15 Score=192.53 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=109.5
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhh-----------hhhHhhh------cC------------CCCCCeEEEEcCCCCh
Q 001395 406 VEQDISKLGGLSKEYAILKDIIISSS-----------VKSTLSS------LG------------LRPTKGVLLHGPPGTG 456 (1086)
Q Consensus 406 ~~~~l~~I~Gl~~~~~~l~e~i~~~~-----------~~~~~~~------lg------------i~~~~~vLL~GPpGTG 456 (1086)
....|++|+|+++.++.+.+.++++. +++.++. .| ++.++.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 34678999999999999999998873 1234444 22 4455669999999999
Q ss_pred HHHHHHHHHHHc---CCcEEEEcccccc------------cccchh----hHHHHHHHHHHhhcCCCeEEEEccchhhcc
Q 001395 457 KTSLARLCAHDS---GVNLFTVNGPEVV------------SQNYGE----SEQALHEVFDSASQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 457 KTtLAralA~~l---g~~~i~I~~s~l~------------s~~~Ge----se~~l~~vf~~a~~~~P~ILfIDEiD~l~~ 517 (1086)
||+||++++.+. |.+.+.|+..+.. ++++++ +|+.++.+|..|+...||+||+|++|+|+|
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998765 4555555555433 566777 899999999999999999999999999999
Q ss_pred CCC---CCC---chhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 518 ARK---DGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 518 ~r~---~~~---~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.+. ..+ .....|++++++..|+++....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 842 111 246678899999999998888888888 66653
No 97
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=4.8e-15 Score=170.10 Aligned_cols=213 Identities=19% Similarity=0.210 Sum_probs=152.4
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----------CCcEEEEeCC
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----------GLNFLAVKGP 843 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----------~~~fi~v~~s 843 (1086)
++++|.++.++.+.+.+.... ....+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV---------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH---------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 789999999999988875421 12445689999999999999999999887 8999999976
Q ss_pred ccc-c----------c-------cccccHH-HHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHH-HHHHHH
Q 001395 844 ELF-S----------K-------WVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRV-MSQLLV 903 (1086)
Q Consensus 844 el~-~----------~-------~vGese~-~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v-~~~LL~ 903 (1086)
+.. . . ..|.... .+..++..+... ++||||||+|.+...+ .... +..|+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRR---------GGDIVLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHST---------TSHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCC---------CCceeHHHHhc
Confidence 532 1 0 1122222 244444444433 3499999999885431 0122 333333
Q ss_pred HHhccccCCCEEEEEecCCC---CCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhc-C--CCCCcccHHHHHHHcC
Q 001395 904 ELDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-I--PCSSDVNIRELACLSE 977 (1086)
Q Consensus 904 ~Ld~~~~~~~v~VI~aTN~p---~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~-~--~l~~d~~l~~La~~t~ 977 (1086)
.. .++.||++||.+ +.+++++.+ ||...+.|++|+.+++.++++.+++. + ....+..++.+++.+.
T Consensus 161 ~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 161 SD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISA 232 (384)
T ss_dssp SS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHH
T ss_pred CC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHH
Confidence 22 589999999988 678999998 88779999999999999999998863 2 1123345777888877
Q ss_pred CC--cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 978 GC--TGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 978 g~--sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
+. +.+.+.++|+.|+..|. ....|+.+|+..++....
T Consensus 233 ~~~G~~r~a~~~l~~a~~~a~----~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 233 KEHGDARKAVNLLFRAAQLAS----GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TTCCCHHHHHHHHHHHHHHTT----SSSCCCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhc----CCCccCHHHHHHHHHHHh
Confidence 22 45677788888877664 346799999999987764
No 98
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.63 E-value=2.1e-15 Score=170.52 Aligned_cols=209 Identities=20% Similarity=0.174 Sum_probs=147.2
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc------cc
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE------LF 846 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se------l~ 846 (1086)
.+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.. +.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 467899999999888776642 257999999999999999999999999999998731 22
Q ss_pred cccccccHHHHHHHHHHHHhcC---CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCCCE
Q 001395 847 SKWVGESEKAVRSLFAKARANA---PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNV 914 (1086)
Q Consensus 847 ~~~vGese~~ir~lf~~A~~~~---p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~~v 914 (1086)
+........ ..|. .... .+||||||++.+ ....++.|+..|+... ...++
T Consensus 90 g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~-------------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 90 GTMIYNQHK---GNFE--VKKGPVFSNFILADEVNRS-------------PAKVQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp EEEEEETTT---TEEE--EEECTTCSSEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred CceeecCCC---CceE--eccCcccccEEEEEccccC-------------CHHHHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 211100000 0000 0011 369999999965 4677888888887431 23467
Q ss_pred EEEEecCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-----------------------Cc
Q 001395 915 TVIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----------------------SD 966 (1086)
Q Consensus 915 ~VI~aTN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-----------------------~d 966 (1086)
+||+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++...+.. .+
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 229 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISE 229 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCH
T ss_pred EEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCH
Confidence 8888888543 38999999 999889999999999999999987643211 11
Q ss_pred ccHHHHHHHc-------------------CCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 967 VNIRELACLS-------------------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 967 ~~l~~La~~t-------------------~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
..++.++... .|.+.|.+..+++.|...|..+. ...|+.+|+.+++..+.
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g--~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN--RDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT--CSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHh
Confidence 1233343321 25588999999998887776654 44699999999887654
No 99
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=7.2e-15 Score=166.66 Aligned_cols=211 Identities=17% Similarity=0.152 Sum_probs=153.4
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC------CcEEEEeC
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------LNFLAVKG 842 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~------~~fi~v~~ 842 (1086)
..+.+|++++|++++++.+...+... ...+++|+||||||||++|+++|+.++ ..++.+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 34568999999999999988887631 223499999999999999999998753 46888888
Q ss_pred CccccccccccHHHHHHHHHHHH----------------hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHh
Q 001395 843 PELFSKWVGESEKAVRSLFAKAR----------------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 906 (1086)
Q Consensus 843 sel~~~~vGese~~ir~lf~~A~----------------~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld 906 (1086)
++..+ ...++..+.... ...+.||||||+|.+ ....++.|+..|+
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-------------~~~~~~~Ll~~le 158 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-------------TADAQSALRRTME 158 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-------------CHHHHHHHHHHHH
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-------------CHHHHHHHHHHHH
Confidence 76421 122222222211 134569999999966 3456788888887
Q ss_pred ccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHH
Q 001395 907 GLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADIS 985 (1086)
Q Consensus 907 ~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~ 985 (1086)
.. ..++.+|++||.++.+++++.+ ||. .+.|++|+.++...+++..+...++. .+..++.+++.+.| +.+.+.
T Consensus 159 ~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~ 232 (353)
T 1sxj_D 159 TY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGI 232 (353)
T ss_dssp HT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHH
T ss_pred hc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 54 3467788889999999999999 886 88999999999999999888665543 34457888888887 456666
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 986 LICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 986 ~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
++++.++..+-+.. ....|+.+++..++....
T Consensus 233 ~~l~~~~~~~~~~~-~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 233 TLLQSASKGAQYLG-DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHHTHHHHHHHC-SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCCc-cCccccHHHHHHHhCCCC
Confidence 67776666553332 112699999998877443
No 100
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.63 E-value=9.1e-16 Score=182.24 Aligned_cols=186 Identities=24% Similarity=0.335 Sum_probs=138.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++|+|.+++++.+.+++... ...++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCcHHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 35688999999999988876432 35689999999999999999999986 778999988
Q ss_pred cccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 478 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 478 s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
. ..|.|+.+..++.+|+.+....+.||||| . ...+.+.|+..| ..+.+.+|++||..+
T Consensus 245 ~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L----~~g~v~vI~at~~~e 302 (468)
T 3pxg_A 245 G---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL----ARGELQCIGATTLDE 302 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECCTTT
T ss_pred C---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh----cCCCEEEEecCCHHH
Confidence 7 67888888899999999988889999999 0 111223333333 467899999999987
Q ss_pred -----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc----CccccchHHHHHHHHHcCCCc
Q 001395 558 -----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHGFV 628 (1086)
Q Consensus 558 -----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~----~~~~l~d~~l~~La~~t~Gfs 628 (1086)
.++++++| ||. .+.| +.|+.+++.+||+.++.. .+..+++..+..++..+++|.
T Consensus 303 ~~~~~~~~~al~~--Rf~-~i~v--------------~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 303 YRKYIEKDAALER--RFQ-PIQV--------------DQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp THHHHTTCSHHHH--SEE-EEEC--------------CCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred HHHHhhcCHHHHH--hCc-ccee--------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 68999999 997 4777 999999999999988776 445678888888888866554
Q ss_pred -----HHHHHHHHHHHHHHHH
Q 001395 629 -----GADLAALCNEAALVCL 644 (1086)
Q Consensus 629 -----gaDL~~L~~eA~~~a~ 644 (1086)
+.....++++|+..+.
T Consensus 366 ~~~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 366 SDRFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp CCSCTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHHHHH
Confidence 5577788888875553
No 101
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=3.1e-14 Score=161.73 Aligned_cols=214 Identities=22% Similarity=0.275 Sum_probs=158.2
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 850 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~v 850 (1086)
..+|++++|++.+++.+...+..... .-.++.+++|+|||||||||+|+++|++++.++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 34788999999988888777653210 1234567999999999999999999999999988887765432
Q ss_pred cccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc----------------cCCCE
Q 001395 851 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVNV 914 (1086)
Q Consensus 851 Gese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~----------------~~~~v 914 (1086)
...+..++.. ...++|+|+||+|.+.+ .+.+.|+..++... ....+
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC---------------CCC
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 2233333332 23467999999997732 33444444443211 01246
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 915 TVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAI 993 (1086)
Q Consensus 915 ~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~-d~~l~~La~~t~g~sgadl~~l~~~A~~ 993 (1086)
.++++|+++..+++++.+ ||...+.+++|+.+++.++++...+..+... +..+..++..+.| +.+++.++++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 778899999999999999 9988899999999999999999887665542 3347788888887 66888999998888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 994 SAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 994 ~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
.|..+. ...|+.+++++++..+.
T Consensus 229 ~a~~~~--~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVK--ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHT--CSSBCHHHHHHHHHHHT
T ss_pred HHHHcC--CCCcCHHHHHHHHHHhC
Confidence 776654 45799999999998865
No 102
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.62 E-value=3.2e-15 Score=166.87 Aligned_cols=206 Identities=18% Similarity=0.247 Sum_probs=149.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc---
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN--- 484 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~--- 484 (1086)
++++|.+.+++.|...+..... .. .-.-.+..++||+||||||||++|+++|+.+ +.+++.+++..+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~-~~--~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARA-GL--KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-TC--SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhc-CC--CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 5789999999999998866511 00 0011234579999999999999999999987 4569999988765431
Q ss_pred --c-------hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc---------CCC
Q 001395 485 --Y-------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR---------TDG 546 (1086)
Q Consensus 485 --~-------Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~---------~~~ 546 (1086)
. |.... ..+.+.......+||||||+|.+. ..+...|+..|+...- ..+
T Consensus 94 ~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 1 11110 122222333345799999999883 4677888888876421 136
Q ss_pred eeEEeccCC--------------------------CCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHH
Q 001395 547 VLVIAATNR--------------------------PDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEI 600 (1086)
Q Consensus 547 viVIatTN~--------------------------~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~I 600 (1086)
+++|+|||. ...++++|.+ ||+..+.+ ++|+.+++.+|
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~--------------~p~~~~~~~~i 224 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVF--------------RPLTKEQIRQI 224 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEEC--------------CCCCHHHHHHH
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEe--------------CCCCHHHHHHH
Confidence 779999998 4467778876 89888887 88999999999
Q ss_pred HHHHHccC---------ccccchHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHhc
Q 001395 601 LHALLSGM---------EHSLLDSEVEYLSMATH--GFVGADLAALCNEAALVCLRRYS 648 (1086)
Q Consensus 601 L~~~l~~~---------~~~l~d~~l~~La~~t~--GfsgaDL~~L~~eA~~~a~rr~~ 648 (1086)
++.++... ...+++..++.++.... .+..++|.++++.+...++.+..
T Consensus 225 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 225 VEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 99877642 34567888999998766 67889999999999887776643
No 103
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=4.1e-16 Score=159.52 Aligned_cols=159 Identities=24% Similarity=0.378 Sum_probs=118.8
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v 840 (1086)
...|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 45789999999988888777642 345679999999999999999999885 7889999
Q ss_pred eCCccc--cccccccHHHHHHHHHHHH-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 841 KGPELF--SKWVGESEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 841 ~~sel~--~~~vGese~~ir~lf~~A~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
++.++. ..+.|.....++.++..+. ...++||||||+|.+...+..... . .+.+.+...++ ..++.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~---~~~~~l~~~~~----~~~~~~i 155 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--M---DAGNMLKPALA----RGELHCV 155 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C--C---CCHHHHHHHHH----TTSCCEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch--H---HHHHHHHHhhc----cCCeEEE
Confidence 987765 3456666777888887664 456889999999998755422111 1 12233333333 3478889
Q ss_pred EecCCCC-----CCChhhhCCCCcceEeecCCCCHHHHHHHH
Q 001395 918 AATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIF 954 (1086)
Q Consensus 918 ~aTN~p~-----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il 954 (1086)
++||.++ .+++++.+ ||+ .+++++|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 9998876 78999999 998 6899999999998875
No 104
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=8.5e-16 Score=157.13 Aligned_cols=158 Identities=25% Similarity=0.369 Sum_probs=117.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++++|.+++++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred ccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 4567899999988888776533 246789999999999999999999986 678999998
Q ss_pred cccc--cccchhhHHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
.++. ..+.|.....+..+++.+. ...+.||||||+|.+.+.+...... .+...|..++ ..+++.+|++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~----~~~~~~~i~~~~ 159 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL----ARGELHCVGATT 159 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHH----HTTSCCEEEEEC
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhh----ccCCeEEEEeCC
Confidence 8876 3466777788888888654 4567899999999997554321111 1223333333 245788999998
Q ss_pred CCC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHH
Q 001395 555 RPD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEIL 601 (1086)
Q Consensus 555 ~~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL 601 (1086)
.++ .+++++++ ||+ .+.+ +.|+.+++.+|+
T Consensus 160 ~~~~~~~~~~~~~l~~--r~~-~i~~--------------~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALER--RFQ-KVFV--------------AEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHT--TEE-EEEC--------------CCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHH--Hhc-eeec--------------CCCCHHHHHHHh
Confidence 876 78999998 997 5777 999999998876
No 105
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.61 E-value=1.4e-14 Score=151.51 Aligned_cols=188 Identities=19% Similarity=0.205 Sum_probs=136.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s 482 (1086)
..+++++|.+.+++.+++.+... ...+++|+||||||||++|+++++.+ ...++.+++.+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 34578999999999998887543 23359999999999999999999875 45688888765432
Q ss_pred ccchhhHHHHHHHHHH--hhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 483 QNYGESEQALHEVFDS--ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~--a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
. ......+...... .....+.||||||+|.+. ......|+.+++.. ..++.+|++||.++.++
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~ 146 (226)
T 2chg_A 82 I--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSCNYVSRII 146 (226)
T ss_dssp H--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCGGGSC
T ss_pred h--HHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCChhhcC
Confidence 1 1111122222111 112467899999999884 23355677777663 45678899999999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
+++++ ||. .+.+ ++|+.++..++++..+...+..+++..++.++..+.| ..+.+.++++.++
T Consensus 147 ~~l~~--r~~-~i~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 147 EPIQS--RCA-VFRF--------------KPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp HHHHT--TSE-EEEC--------------CCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHH--hCc-eeec--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99988 886 6777 9999999999999988776666788889999988876 5566666655554
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.5e-15 Score=169.00 Aligned_cols=201 Identities=10% Similarity=0.151 Sum_probs=143.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEV 480 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~s~l 480 (1086)
+-|.|.+++++.|...+... +.-..+.+++|+||||||||++++.+++++ +..++.+||..+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cccCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 34788889999988887665 223468899999999999999999999988 357899999876
Q ss_pred cccc----------------chhhHHHHHHHHHHh--hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc
Q 001395 481 VSQN----------------YGESEQALHEVFDSA--SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC 542 (1086)
Q Consensus 481 ~s~~----------------~Gese~~l~~vf~~a--~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~ 542 (1086)
.+.+ .++....+..+|+.. ....+.||||||+|.+. .++++..|+++.. .
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~--~ 159 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL----------SEKILQYFEKWIS--S 159 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC----------CTHHHHHHHHHHH--C
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh----------cchHHHHHHhccc--c
Confidence 5431 234566788888875 34567899999999996 1234444554432 2
Q ss_pred cCCCeeEEeccCCCCCC----CccccCCCCcc-eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc-------
Q 001395 543 RTDGVLVIAATNRPDSI----EPALRRPGRLD-REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH------- 610 (1086)
Q Consensus 543 ~~~~viVIatTN~~d~i----dpaL~r~GRfd-r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~------- 610 (1086)
...+++||+++|..+.. ++++++ ||. ++|.| ++|+.++..+|++..+.....
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F--------------~pYt~~el~~Il~~Rl~~~~~~~f~~~~ 223 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKL--------------NKVDKNELQQMIITRLKSLLKPFHVKVN 223 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEEC--------------CCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEe--------------CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 35679999999988754 455566 775 46666 999999999999998865321
Q ss_pred ----------------------------ccchHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 611 ----------------------------SLLDSEVEYLSMA---THGFVGADLAALCNEAALVCLRRYS 648 (1086)
Q Consensus 611 ----------------------------~l~d~~l~~La~~---t~GfsgaDL~~L~~eA~~~a~rr~~ 648 (1086)
.+++..++.+|+. ..| ..+-.-.+|+.|+..|-++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~ 291 (318)
T 3te6_A 224 DKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFV 291 (318)
T ss_dssp TTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHH
Confidence 2467788888874 344 344445678888777765543
No 107
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=7.6e-15 Score=165.53 Aligned_cols=195 Identities=15% Similarity=0.289 Sum_probs=138.0
Q ss_pred cccccC-C--cHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccc
Q 001395 409 DISKLG-G--LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS 482 (1086)
Q Consensus 409 ~l~~I~-G--l~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s 482 (1086)
.|++++ | .......++.++..+ + ..+.+++|+||||||||++|+++++.+ +.+++.+++.++..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~---------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENL---------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTT---------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCc---------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 445554 3 444455555555443 1 346789999999999999999999988 89999999988766
Q ss_pred ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC---CC
Q 001395 483 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---SI 559 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d---~i 559 (1086)
.+.+.........|.... ..++||||||+|.+..+ ......++..++.....+..+|+++++.+. .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 79 AMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC---------hHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 554443332222233322 23679999999998531 123445666666554555667777777766 67
Q ss_pred CccccCCCCcc--eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHH
Q 001395 560 EPALRRPGRLD--REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 637 (1086)
Q Consensus 560 dpaL~r~GRfd--r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~ 637 (1086)
++++++ ||. ..+.+ ++ +.+++.+|++.++...+..+++..++.++..+ | ..+++..++.
T Consensus 149 ~~~L~s--R~~~~~~i~l--------------~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~ 209 (324)
T 1l8q_A 149 SDRLVS--RFEGGILVEI--------------EL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIK 209 (324)
T ss_dssp CHHHHH--HHHTSEEEEC--------------CC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHH
T ss_pred hhHhhh--cccCceEEEe--------------CC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHH
Confidence 888888 886 45555 88 99999999999998877788899999999999 4 6778887777
Q ss_pred HHHHH
Q 001395 638 EAALV 642 (1086)
Q Consensus 638 eA~~~ 642 (1086)
.+...
T Consensus 210 ~~~~~ 214 (324)
T 1l8q_A 210 LIKLK 214 (324)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66543
No 108
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=4.4e-14 Score=162.03 Aligned_cols=222 Identities=13% Similarity=0.123 Sum_probs=161.6
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCC--CcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCCcc
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT--GILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL 845 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~--gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~sel 845 (1086)
...++++|.+...+.+.+++..... + ..+. .++|+||||||||++++++++.. +..++.+++...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 3447899999999999888764211 1 2333 79999999999999999999987 678999997654
Q ss_pred ccc----------------cccccHHHH-HHHHHHHH-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhc
Q 001395 846 FSK----------------WVGESEKAV-RSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 907 (1086)
Q Consensus 846 ~~~----------------~vGese~~i-r~lf~~A~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~ 907 (1086)
... ..+.....+ ..+..... ...|.||||||+|.+ ....+..|+..++.
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIRLGQE 151 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHHHHHh
Confidence 321 011122222 22222222 245889999999965 35677888888765
Q ss_pred ccc--CCCEEEEEecCCC---CCCChhhhCCCCcce-EeecCCCCHHHHHHHHHHHHhc---CCCCCcccHHHHHHHc--
Q 001395 908 LHQ--RVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRK---IPCSSDVNIRELACLS-- 976 (1086)
Q Consensus 908 ~~~--~~~v~VI~aTN~p---~~lD~aLlrpgRFd~-~I~~~~P~~~eR~~Il~~~l~~---~~l~~d~~l~~La~~t-- 976 (1086)
... ..++.||++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. .....+..++.+++.+
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGA 229 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSB
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Confidence 432 1488999999988 678888888 8874 8999999999999999988764 1222445577888888
Q ss_pred -------CCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 001395 977 -------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 977 -------~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
.| ..+.+.++|+.|+..|..+. ...|+.+|+..++......
T Consensus 230 ~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 230 QTPLDTNRG-DARLAIDILYRSAYAAQQNG--RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp SSTTCTTSC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHSCC
T ss_pred cccCCCCCC-cHHHHHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHhhh
Confidence 44 56788899999988886654 4579999999998887654
No 109
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.60 E-value=5.4e-15 Score=164.91 Aligned_cols=208 Identities=19% Similarity=0.200 Sum_probs=147.3
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCC
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGP 843 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~s 843 (1086)
..+..|++++|++.+++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 3456899999999999988877652 122349999999999999999999885 4568889987
Q ss_pred ccccccccccHHHHHHHHHHH-H-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecC
Q 001395 844 ELFSKWVGESEKAVRSLFAKA-R-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 921 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A-~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN 921 (1086)
+..+. ......+....... . ...+.||||||+|.+ ....++.|+..|+.. ..++++|++||
T Consensus 78 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~--~~~~~~i~~~~ 140 (319)
T 2chq_A 78 DERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-------------TADAQAALRRTMEMY--SKSCRFILSCN 140 (319)
T ss_dssp STTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-------------CHHHHHTTGGGTSSS--SSSEEEEEEES
T ss_pred cccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-------------CHHHHHHHHHHHHhc--CCCCeEEEEeC
Confidence 64321 11112222221110 1 245789999999976 345567777777643 45789999999
Q ss_pred CCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 001395 922 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 1000 (1086)
Q Consensus 922 ~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~ 1000 (1086)
.++.+++++.+ ||. .+.|++|+.+++.++++.++++.+.. .+..++.++..+.| +.+.+.++++.++..
T Consensus 141 ~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~------ 210 (319)
T 2chq_A 141 YVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI------ 210 (319)
T ss_dssp CGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS------
T ss_pred ChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc------
Confidence 99999999999 885 89999999999999999998876654 33446777877766 445555555544321
Q ss_pred CCCCCCHHHHHHHHHhh
Q 001395 1001 DASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 1001 ~~~~It~~d~~~al~~~ 1017 (1086)
...|+.+++...+...
T Consensus 211 -~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 211 -GEVVDADTIYQITATA 226 (319)
T ss_dssp -SSCBCHHHHHHHTTCC
T ss_pred -CCCCCHHHHHHHHCCC
Confidence 3468888887765543
No 110
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.59 E-value=9.4e-15 Score=172.30 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=136.7
Q ss_pred ccccccCCcHHHH---HHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccccc
Q 001395 408 QDISKLGGLSKEY---AILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~---~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~ 484 (1086)
..+++++|.+..+ ..|+..+... ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~---- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS---- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC----
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC----
Confidence 4578999999998 6777776554 12679999999999999999999999999999986442
Q ss_pred chhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEecc--CCCCC
Q 001395 485 YGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT--NRPDS 558 (1086)
Q Consensus 485 ~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatT--N~~d~ 558 (1086)
....++.+|+.+. ...+.||||||||.+.. .....|+..|+. +.+++|++| |....
T Consensus 87 ---~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~----~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 87 ---GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIED----GTITFIGATTENPSFE 148 (447)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGGGS
T ss_pred ---CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhc----CceEEEecCCCCcccc
Confidence 2233455555443 34678999999998842 233457777764 567788777 44557
Q ss_pred CCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc-------CccccchHHHHHHHHHcCCCcHHH
Q 001395 559 IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG-------MEHSLLDSEVEYLSMATHGFVGAD 631 (1086)
Q Consensus 559 idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~-------~~~~l~d~~l~~La~~t~GfsgaD 631 (1086)
+++++++ |+. .+.+ ++|+.+++.++++..+.. ....+++..++.++..+.| ..++
T Consensus 149 l~~aL~s--R~~-v~~l--------------~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~ 210 (447)
T 3pvs_A 149 LNSALLS--RAR-VYLL--------------KSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARR 210 (447)
T ss_dssp SCHHHHT--TEE-EEEC--------------CCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHH
T ss_pred cCHHHhC--cee-EEee--------------CCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHH
Confidence 8899998 775 5556 889999999999999876 3455788899999999776 5677
Q ss_pred HHHHHHHHHHHH
Q 001395 632 LAALCNEAALVC 643 (1086)
Q Consensus 632 L~~L~~eA~~~a 643 (1086)
+.++++.+...+
T Consensus 211 lln~Le~a~~~a 222 (447)
T 3pvs_A 211 ALNTLEMMADMA 222 (447)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 777777765443
No 111
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=1.6e-14 Score=152.78 Aligned_cols=185 Identities=20% Similarity=0.279 Sum_probs=138.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 471 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~---------------- 471 (1086)
..+++++|.+.+++.|.+.+... ..+..++|+||||||||++++++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 34578999999999998887543 234579999999999999999999887431
Q ss_pred --------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 472 --------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 472 --------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
++.++... ......+..+++.+. ...+.+|||||+|.+. ......|+..++
T Consensus 89 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~l~ 151 (250)
T 1njg_A 89 IEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKTLE 151 (250)
T ss_dssp HHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHHHH
T ss_pred HhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHHHh
Confidence 22222211 122334556666543 3457899999999872 345567777776
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEY 619 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~ 619 (1086)
.. ..++.+|++||.++.+++++++ |+ ..+.+ ++++.++..++++.++...+..+++..++.
T Consensus 152 ~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l--------------~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~ 212 (250)
T 1njg_A 152 EP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHL--------------KALDVEQIRHQLEHILNEEHIAHEPRALQL 212 (250)
T ss_dssp SC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEEC--------------CCCCHHHHHHHHHHHHHHTTCCBCHHHHHH
T ss_pred cC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccC--------------CCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 53 4578899999998889888887 65 46666 999999999999999887776778888999
Q ss_pred HHHHcCCCcHHHHHHHHHHHH
Q 001395 620 LSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 620 La~~t~GfsgaDL~~L~~eA~ 640 (1086)
+++.+.| .++.+.++++.|.
T Consensus 213 l~~~~~G-~~~~~~~~~~~~~ 232 (250)
T 1njg_A 213 LARAAEG-SLRDALSLTDQAI 232 (250)
T ss_dssp HHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9999977 7888888887764
No 112
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=1.8e-14 Score=164.71 Aligned_cols=204 Identities=20% Similarity=0.196 Sum_probs=144.3
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEcccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVV 481 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---------g~~~i~I~~s~l~ 481 (1086)
++++|.+++++.+.+.+... +....+.+++|+||||||||++|+++++.+ +..++.+++....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~--------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA--------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG--------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHH--------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 68999999999998877543 122456789999999999999999999988 7889999987643
Q ss_pred ccc----------------chh-hHHHHHHHHHHhhc-CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc
Q 001395 482 SQN----------------YGE-SEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 543 (1086)
Q Consensus 482 s~~----------------~Ge-se~~l~~vf~~a~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~ 543 (1086)
+.+ .|. ....+..+++.+.. ..|+||||||+|.+...+ .....+..++..++....
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQELGD 164 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC--
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhcCC
Confidence 221 122 22334455555433 347899999999985321 023445555555443321
Q ss_pred CCCeeEEeccCCC---CCCCccccCCCCcce-eeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc--CccccchHHH
Q 001395 544 TDGVLVIAATNRP---DSIEPALRRPGRLDR-EIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG--MEHSLLDSEV 617 (1086)
Q Consensus 544 ~~~viVIatTN~~---d~idpaL~r~GRfdr-~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~--~~~~l~d~~l 617 (1086)
..++.+|++||.+ +.+++.+++ ||.. .+.+ ++|+.+++.+|++..+.. .+..+++..+
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l--------------~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 228 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVF--------------PPYTAPQLRDILETRAEEAFNPGVLDPDVV 228 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHT--TTTSEECCB--------------CCCCHHHHHHHHHHHHHHHBCTTTBCSSHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEee--------------CCCCHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 5678999999987 677888887 7764 6666 999999999999998764 3345677788
Q ss_pred HHHHHHcC---CCcHHHHHHHHHHHHHHHHH
Q 001395 618 EYLSMATH---GFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 618 ~~La~~t~---GfsgaDL~~L~~eA~~~a~r 645 (1086)
+.++..+. | .++.+.++++.|...|..
T Consensus 229 ~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 229 PLCAALAAREHG-DARRALDLLRVAGEIAER 258 (387)
T ss_dssp HHHHHHHHSSSC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHH
Confidence 88888887 5 567778888888766644
No 113
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=2.3e-14 Score=163.61 Aligned_cols=224 Identities=17% Similarity=0.234 Sum_probs=157.9
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh------CCcEEEEeCCc
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------GLNFLAVKGPE 844 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~------~~~fi~v~~se 844 (1086)
....++++|.++..+.+.+.+..... ...+..++|+||||||||++|+++++.. +.+++.+++..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34457899999999988887653211 2345679999999999999999999987 88999999754
Q ss_pred ccc------c----------cccccHHH-HHHHHHHHHhc-CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHh
Q 001395 845 LFS------K----------WVGESEKA-VRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 906 (1086)
Q Consensus 845 l~~------~----------~vGese~~-ir~lf~~A~~~-~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld 906 (1086)
... . ..|..... ...++...... .|+||||||++.+.... ....+..|+..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~---------~~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY---------NDDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS---------CSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC---------cCHHHHHHhhchh
Confidence 211 0 11222223 34444444443 38999999999886432 1245667777776
Q ss_pred ccccCCCEEEEEecCCC---CCCChhhhCCCCcc-eEeecCCCCHHHHHHHHHHHHhcCC---CCCcccHHHHHHHcC--
Q 001395 907 GLHQRVNVTVIAATNRP---DKIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKIP---CSSDVNIRELACLSE-- 977 (1086)
Q Consensus 907 ~~~~~~~v~VI~aTN~p---~~lD~aLlrpgRFd-~~I~~~~P~~~eR~~Il~~~l~~~~---l~~d~~l~~La~~t~-- 977 (1086)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.... ...+..++.++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 44 34578999999987 457888888 775 5899999999999999998776311 123334666777776
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 978 -GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 978 -g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
| +.+.+.++|+.|+..+..+. ...|+.+|+..++..+.
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~--~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMK--DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcC--CCccCHHHHHHHHHHHh
Confidence 5 56677789998888776543 45799999998887654
No 114
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=3e-14 Score=159.20 Aligned_cols=204 Identities=14% Similarity=0.154 Sum_probs=150.3
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCC
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGP 843 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~s 843 (1086)
..+..|++++|++.+++.+.+.+.. ...+. ++|+||||||||++|+++++.+ +.+++.++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD------------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS------------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc------------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 3455789999999999999888753 12333 9999999999999999999885 4568888877
Q ss_pred ccccccccccHHHHHHHHHHHH-------hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEE
Q 001395 844 ELFSKWVGESEKAVRSLFAKAR-------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 916 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A~-------~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~V 916 (1086)
+.. ....++.++.... ...+.||||||+|.+ ....++.|+..++.. ..++.+
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~--~~~~~~ 140 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-------------TAGAQQALRRTMELY--SNSTRF 140 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-------------CHHHHHTTHHHHHHT--TTTEEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-------------CHHHHHHHHHHHhcc--CCCceE
Confidence 632 1345566666554 334789999999976 344567788888753 457888
Q ss_pred EEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 917 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 917 I~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
|++||.++.+++++.+ |+. .+.|++|+.+++.++++.+++..+.. .+..+..+++.+.| +.+.+.++++.++..
T Consensus 141 il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~- 215 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG- 215 (323)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-
T ss_pred EEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-
Confidence 9999999999999998 775 89999999999999999888654433 33457788888877 444455555544421
Q ss_pred HHHhcCCCCCCHHHHHHHHHhh
Q 001395 996 IEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 996 ~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
...|+.+++.+++...
T Consensus 216 ------~~~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 216 ------HGLVNADNVFKIVDSP 231 (323)
T ss_dssp ------HSSBCHHHHHHHHTSC
T ss_pred ------CCCcCHHHHHHHHCCC
Confidence 1358888888776543
No 115
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.59 E-value=9.1e-15 Score=172.29 Aligned_cols=175 Identities=12% Similarity=0.184 Sum_probs=128.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 518 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~ 518 (1086)
+.+++||||||||||+||+++++.+ +..++.+++.++...+.+.........|.......++||||||+|.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 6789999999999999999999988 88899999888755444332221122233333336789999999998532
Q ss_pred CCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCC---CCccccCCCCcc--eeeehhhhhhhhhcccCCCCCCC
Q 001395 519 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIDMSFLFSLLKNSPAAVPS 593 (1086)
Q Consensus 519 r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~---idpaL~r~GRfd--r~I~i~l~~~~~~~~~v~~~~Pd 593 (1086)
......|+..++.+...+..+||++.+.+.. +++++++ ||. ..+.+ ++|+
T Consensus 210 ---------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l--------------~~p~ 264 (440)
T 2z4s_A 210 ---------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKL--------------EPPD 264 (440)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBC--------------CCCC
T ss_pred ---------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEe--------------CCCC
Confidence 1234556666666555555666655555554 6788887 775 44555 9999
Q ss_pred HHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 594 PAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 594 ~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~ 644 (1086)
.++|.+|++..+...+..+++..++.++..+.| +.+++..+++.+...|.
T Consensus 265 ~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 265 EETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 999999999998876777788889999998876 78899988888876664
No 116
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.58 E-value=2.9e-14 Score=162.86 Aligned_cols=203 Identities=20% Similarity=0.253 Sum_probs=149.4
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--------------
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------------- 835 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~-------------- 835 (1086)
.+..|++++|++.+++.+...+.. -..+..++|+||+|||||++|+++|+..+.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 445789999999999999888752 123456899999999999999999998754
Q ss_pred ----------cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 836 ----------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 836 ----------~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
.++.+++..- .....++.++..+. ...+.||||||+|.+ ....++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L 139 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNAL 139 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-------------CHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchh-------------cHHHHHHH
Confidence 2333433220 11223566666654 234789999999966 45677888
Q ss_pred HHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCc
Q 001395 902 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 980 (1086)
Q Consensus 902 L~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~s 980 (1086)
+..++.. ..++++|++|+.++.+.+++.+ |+ ..+.|++|+.++..++++.++++.+.. .+..+..+++.+.| +
T Consensus 140 l~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~ 213 (373)
T 1jr3_A 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 213 (373)
T ss_dssp HHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred HHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence 8888753 4578999999999999999998 77 689999999999999999988765544 23347778888877 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001395 981 GADISLICREAAISAIEENLDASRITMQHLKTAIR 1015 (1086)
Q Consensus 981 gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~ 1015 (1086)
.+++.++++.+...+ ...|+.+++..++.
T Consensus 214 ~r~~~~~l~~~~~~~------~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 214 LRDALSLTDQAIASG------DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHHHHHHT------TTCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc------CCcccHHHHHHHhC
Confidence 778888887775432 24577777665543
No 117
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.57 E-value=1.5e-14 Score=181.53 Aligned_cols=199 Identities=17% Similarity=0.244 Sum_probs=149.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCC----CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLR----PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~----~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~ 483 (1086)
++++|.+..++.|.+.+.... .+.. |..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 579999999999999887651 2222 22369999999999999999999987 678999999999887
Q ss_pred cchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc---------cCCCeeEEeccC
Q 001395 484 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTDGVLVIAATN 554 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~---------~~~~viVIatTN 554 (1086)
+... ...+++......++||||||||.+ ...+...|+..|+.-. ...++++|+|||
T Consensus 564 ~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 HSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred cccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 6544 122233334455679999999987 3577888999998732 224689999999
Q ss_pred CCCC------------CCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC---------ccccc
Q 001395 555 RPDS------------IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM---------EHSLL 613 (1086)
Q Consensus 555 ~~d~------------idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~---------~~~l~ 613 (1086)
.+.. +.|+|++ ||+..|.+ ++|+.+++.+|++.++... ...++
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~--------------~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 692 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVF--------------HSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT 692 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEEC--------------C--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEec--------------CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 7554 6778877 99888888 9999999999999877542 34567
Q ss_pred hHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 614 DSEVEYLSMA--THGFVGADLAALCNEAALVCLRRY 647 (1086)
Q Consensus 614 d~~l~~La~~--t~GfsgaDL~~L~~eA~~~a~rr~ 647 (1086)
+..++.|+.. ...+..++|.++++.+...++.+.
T Consensus 693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 693 DAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp HHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 8888888874 345678899999988877776653
No 118
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=4.4e-14 Score=158.09 Aligned_cols=204 Identities=23% Similarity=0.291 Sum_probs=146.5
Q ss_pred cCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC-----CcEEEEeCC
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGP 843 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~-----~~fi~v~~s 843 (1086)
..+.+|++++|++++++.+..++.. + ...+++|+||||||||++|+++++.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 4456899999999999999887753 1 223499999999999999999998853 457888876
Q ss_pred ccccccccccHHHHHHHHHHH-H-----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 844 ELFSKWVGESEKAVRSLFAKA-R-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 844 el~~~~vGese~~ir~lf~~A-~-----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
+..+ ...++..+... . ...+.||||||+|.+ ....++.|+..|+.. ..++.+|
T Consensus 86 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~--~~~~~~i 144 (327)
T 1iqp_A 86 DERG------INVIREKVKEFARTKPIGGASFKIIFLDEADAL-------------TQDAQQALRRTMEMF--SSNVRFI 144 (327)
T ss_dssp CHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHT--TTTEEEE
T ss_pred ccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-------------CHHHHHHHHHHHHhc--CCCCeEE
Confidence 6421 11122222221 1 145789999999966 345678888888753 4578899
Q ss_pred EecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 001395 918 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 996 (1086)
Q Consensus 918 ~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~ 996 (1086)
++||.++.+++++.+ ||. .+.|++++.++..++++..++..+.. .+..++.++..+.| +.+.+.++++.++..
T Consensus 145 ~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~-- 218 (327)
T 1iqp_A 145 LSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-- 218 (327)
T ss_dssp EEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHTT--
T ss_pred EEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHhc--
Confidence 999999999999998 886 78999999999999999988766543 33457778888876 555555666544421
Q ss_pred HHhcCCCCCCHHHHHHHHHhh
Q 001395 997 EENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 997 ~~~~~~~~It~~d~~~al~~~ 1017 (1086)
...|+.+++...+...
T Consensus 219 -----~~~i~~~~v~~~~~~~ 234 (327)
T 1iqp_A 219 -----DKKITDENVFMVASRA 234 (327)
T ss_dssp -----CSEECHHHHHHHTTCC
T ss_pred -----CCCCCHHHHHHHHCCC
Confidence 2357777776655443
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.9e-14 Score=161.93 Aligned_cols=176 Identities=10% Similarity=0.133 Sum_probs=125.9
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEEeCCccccc----------c------ccccHHHHHH
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGPELFSK----------W------VGESEKAVRS 859 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v~~sel~~~----------~------vGese~~ir~ 859 (1086)
...+.+++|+||||||||++++++++++ ...++.++|..+.+. . .+.....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3567889999999999999999999987 457899998765332 1 2345667788
Q ss_pred HHHHH--HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC----ChhhhCC
Q 001395 860 LFAKA--RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI----DPALLRP 933 (1086)
Q Consensus 860 lf~~A--~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l----D~aLlrp 933 (1086)
.|... ....++||||||+|.|. ...++..|+.... ....++.||+++|..+.. ++++.+
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~------------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL------------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC------------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHHhhhccCCceEEEEecHHHhh------------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 88875 35668899999999885 1245555555433 245679999999998764 444455
Q ss_pred CCcc-eEeecCCCCHHHHHHHHHHHHhcCCC------------------------------------CCcccHHHHHHH-
Q 001395 934 GRFD-RLLYVGPPNETDREEIFRIHLRKIPC------------------------------------SSDVNIRELACL- 975 (1086)
Q Consensus 934 gRFd-~~I~~~~P~~~eR~~Il~~~l~~~~l------------------------------------~~d~~l~~La~~- 975 (1086)
||. ++|.|++++.++..+|++..++...- ..+..++.+|+.
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v 265 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV 265 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 886 68999999999999999999876421 122235556663
Q ss_pred --cCCCcHHHHHHHHHHHHHHHHHH
Q 001395 976 --SEGCTGADISLICREAAISAIEE 998 (1086)
Q Consensus 976 --t~g~sgadl~~l~~~A~~~A~~~ 998 (1086)
..| ..|-.-++|+.|+..|-++
T Consensus 266 A~~~G-D~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 266 ANVSG-STEKAFKICEAAVEISKKD 289 (318)
T ss_dssp HHHHC-SHHHHHHHHHHHHHHHHHH
T ss_pred HhhCC-hHHHHHHHHHHHHHHHHHH
Confidence 334 4555667788888877655
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=2.2e-14 Score=161.45 Aligned_cols=173 Identities=20% Similarity=0.273 Sum_probs=130.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..|++++|.+++++.|++++... ..+..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~------ 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK------ 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC------
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC------
Confidence 45689999999999999888633 3455678889999999999999999999999999987642
Q ss_pred hHHHHHHHHHHhhc-----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcc
Q 001395 488 SEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 562 (1086)
Q Consensus 488 se~~l~~vf~~a~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpa 562 (1086)
...++..+..... ..+.||||||+|.+.+ ......|+..++.. ..++.+|++||.+..++++
T Consensus 86 -~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 86 -IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp -HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGSCTT
T ss_pred -HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeCCccccCHH
Confidence 2234443333221 2568999999998831 34566788888764 3467899999999999999
Q ss_pred ccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHH-------ccCccccch-HHHHHHHHHcCCC
Q 001395 563 LRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALL-------SGMEHSLLD-SEVEYLSMATHGF 627 (1086)
Q Consensus 563 L~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l-------~~~~~~l~d-~~l~~La~~t~Gf 627 (1086)
+++ ||. .+.+ +.|+.++|.+|++.+. ...+..+++ ..++.++..+.|-
T Consensus 153 l~s--R~~-~i~~--------------~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 153 LQS--RCR-VITF--------------GQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp HHH--HSE-EEEC--------------CCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred HHh--hCc-EEEe--------------CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 998 884 5777 9999999877655543 333455667 8889999887763
No 121
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=9.7e-15 Score=185.56 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=137.1
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v 840 (1086)
+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45789999999888887776642 345679999999999999999999987 8899999
Q ss_pred eCCccc--cccccccHHHHHHHHHHHHhc-CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 841 KGPELF--SKWVGESEKAVRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 841 ~~sel~--~~~vGese~~ir~lf~~A~~~-~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
+++.+. .+|.|+.+..++.+|..+... .|+||||||+|.+.+.+...+ ...+.+.|...++ ..++.+|
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~----~~~i~~I 303 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA----RGELRLI 303 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----TTCCCEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh----CCCeEEE
Confidence 999886 568899999999999999875 689999999999976543221 1234444555554 4578899
Q ss_pred EecCCCC----CCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC----CCC-CcccHHHHHHHcC-----CCcHHH
Q 001395 918 AATNRPD----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCS-SDVNIRELACLSE-----GCTGAD 983 (1086)
Q Consensus 918 ~aTN~p~----~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~----~l~-~d~~l~~La~~t~-----g~sgad 983 (1086)
++||.++ .+|+++.| ||+. |.|+.|+.+++.+|++.++..+ .+. .+..+..++..+. .|....
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 9998775 47999999 9985 8999999999999998777643 221 2333555665543 455667
Q ss_pred HHHHHHHHHHHHHH
Q 001395 984 ISLICREAAISAIE 997 (1086)
Q Consensus 984 l~~l~~~A~~~A~~ 997 (1086)
...++.+|+..+..
T Consensus 381 ai~lldea~a~~~~ 394 (854)
T 1qvr_A 381 AIDLIDEAAARLRM 394 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77778777765543
No 122
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1.9e-14 Score=172.88 Aligned_cols=191 Identities=19% Similarity=0.292 Sum_probs=130.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhh--hhHhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSV--KSTLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~--~~~~~~lgi~---~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s 482 (1086)
..+++|+|.+.+++.|++++..... +..+...|.. +++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 3568999999999999999876421 1233334433 5689999999999999999999999999999999988765
Q ss_pred ccchhhHH-------HHHHHHHHh-----hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEE
Q 001395 483 QNYGESEQ-------ALHEVFDSA-----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVI 550 (1086)
Q Consensus 483 ~~~Gese~-------~l~~vf~~a-----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVI 550 (1086)
.+..+... .+..+|..+ ....++||||||+|.+.... +..+..|+.+++.. ...+++|
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHC--SSCEEEE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHhc--CCCEEEE
Confidence 43221110 012233322 23567899999999996432 12345666666542 2234444
Q ss_pred eccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 551 AATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 551 atTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
+++.....+. .++ |+...+.+ +.|+.+++.+++...+...+..+++..++.+++.+.|
T Consensus 186 ~~~~~~~~l~-~l~---~r~~~i~f--------------~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 186 CNERNLPKMR-PFD---RVCLDIQF--------------RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp ESCTTSSTTG-GGT---TTSEEEEC--------------CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred EcCCCCccch-hhH---hceEEEEe--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4333323333 343 33446666 9999999999999888776667788889999998866
No 123
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.54 E-value=1.8e-14 Score=171.73 Aligned_cols=209 Identities=17% Similarity=0.184 Sum_probs=135.5
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC--CcEEEEeCC-----cccc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGP-----ELFS 847 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~--~~fi~v~~s-----el~~ 847 (1086)
..++|++++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+.+. ++++
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 4578999998877666542 35799999999999999999999874 466666553 3333
Q ss_pred ccccccHHHHHHHHHHHHhc---CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc--------cCCCEEE
Q 001395 848 KWVGESEKAVRSLFAKARAN---APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTV 916 (1086)
Q Consensus 848 ~~vGese~~ir~lf~~A~~~---~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~--------~~~~v~V 916 (1086)
.+.+..... ...|..+..+ .++|||||||+.+ ...+++.|+..|+... .....++
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 333322111 1222222222 4679999999843 5788999999996321 1112356
Q ss_pred EEecCCCCC---CChhhhCCCCcceEeecCCCCH-HHHHHHHHHHHhc-------------------------CCCCCcc
Q 001395 917 IAATNRPDK---IDPALLRPGRFDRLLYVGPPNE-TDREEIFRIHLRK-------------------------IPCSSDV 967 (1086)
Q Consensus 917 I~aTN~p~~---lD~aLlrpgRFd~~I~~~~P~~-~eR~~Il~~~l~~-------------------------~~l~~d~ 967 (1086)
|+|||.+.. ..+++++ ||...++++.|+. +++..|++.+... ..+. +.
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~ 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence 888886432 4569999 9999999999997 6788888765421 1111 11
Q ss_pred cHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 968 NIRELACLS---------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 968 ~l~~La~~t---------~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
-++.++... .|.+.|.+..+++.|...|..+. ...|+.+|+. .+..+-
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g--r~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG--RSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT--CSBCCGGGGG-GGGGTS
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC--CccccchHHH-HHHhhh
Confidence 133344333 47889999999998888777665 4567888877 444433
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=8.3e-14 Score=159.75 Aligned_cols=195 Identities=18% Similarity=0.154 Sum_probs=138.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----------CCcEEEEcccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----------GVNLFTVNGPE 479 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-----------g~~~i~I~~s~ 479 (1086)
++++|.+++++.+.+.+... . .-..+.+++|+||||||||++|+++++++ +..++.+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~-~-------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYF-V-------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHH-H-------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHH-H-------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 68999999999999988654 1 12346689999999999999999999987 89999999876
Q ss_pred cc-cc-----------------cchh-hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHH-HHHHHHHhh
Q 001395 480 VV-SQ-----------------NYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM-VATLLNLMD 539 (1086)
Q Consensus 480 l~-s~-----------------~~Ge-se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv-~~~Ll~lLd 539 (1086)
.. +. ..|. ....+..+++.+....+ ||||||+|.+..... ... +..|+ +
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~-------~~~~l~~l~---~ 160 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG-------GDIVLYQLL---R 160 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT-------SHHHHHHHH---T
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC-------CceeHHHHh---c
Confidence 53 11 0111 12334455554544444 999999999863210 122 33333 2
Q ss_pred ccccCCCeeEEeccCCC---CCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc--Cccccch
Q 001395 540 GVCRTDGVLVIAATNRP---DSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG--MEHSLLD 614 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~---d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~--~~~~l~d 614 (1086)
.. .++.+|++||.+ +.+++++++ ||...+.+ ++|+.++..+|++..+.. .+..+++
T Consensus 161 ~~---~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l--------------~~l~~~~~~~il~~~~~~~~~~~~~~~ 221 (384)
T 2qby_B 161 SD---ANISVIMISNDINVRDYMEPRVLS--SLGPSVIF--------------KPYDAEQLKFILSKYAEYGLIKGTYDD 221 (384)
T ss_dssp SS---SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEE--------------CCCCHHHHHHHHHHHHHHTSCTTSCCS
T ss_pred CC---cceEEEEEECCCchHhhhCHHHHh--cCCCeEEE--------------CCCCHHHHHHHHHHHHHhhcccCCcCH
Confidence 22 678999999987 678888887 88778888 999999999999998763 2345677
Q ss_pred HHHHHHHHHcCC--CcHHHHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHG--FVGADLAALCNEAALVC 643 (1086)
Q Consensus 615 ~~l~~La~~t~G--fsgaDL~~L~~eA~~~a 643 (1086)
..++.+++.+.+ -..+.+.++++.|...|
T Consensus 222 ~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 222 EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 888889888872 24556666777765443
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=6.9e-14 Score=149.03 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=131.3
Q ss_pred cccccCC---cHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccc
Q 001395 409 DISKLGG---LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS 482 (1086)
Q Consensus 409 ~l~~I~G---l~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s 482 (1086)
.|++++| .+..++.++.++.. ..+.+++|+||||||||++|+++++.+ +..++.+++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 3456665 34555555555432 146789999999999999999999877 46788888887765
Q ss_pred ccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCe-eEEeccCCCC---C
Q 001395 483 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV-LVIAATNRPD---S 558 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~v-iVIatTN~~d---~ 558 (1086)
.... .++. ...+.+|||||+|.+... ......|+.+++.....+.+ +|++++..++ .
T Consensus 94 ~~~~--------~~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 94 ISTA--------LLEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp SCGG--------GGTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred HHHH--------HHHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 4321 1111 134679999999988421 12234566666655444555 4444444443 3
Q ss_pred CCccccCCCCcc--eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHH
Q 001395 559 IEPALRRPGRLD--REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 636 (1086)
Q Consensus 559 idpaL~r~GRfd--r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~ 636 (1086)
+++++++ ||. ..+.+ +.|+.+++.++++.++...+..+++..++.++..+.| ..+++.+++
T Consensus 155 ~~~~l~~--r~~~~~~i~l--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVS--RMHWGLTYQL--------------QPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVL 217 (242)
T ss_dssp CCHHHHH--HHHHSEEEEC--------------CCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred hhhhhhh--HhhcCceEEe--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHH
Confidence 4466776 664 56666 9999999999999999877777888899999998866 788888888
Q ss_pred HHHHHHHHH
Q 001395 637 NEAALVCLR 645 (1086)
Q Consensus 637 ~eA~~~a~r 645 (1086)
+.+...+..
T Consensus 218 ~~~~~~a~~ 226 (242)
T 3bos_A 218 DRLDKASMV 226 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776643
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.2e-13 Score=157.09 Aligned_cols=190 Identities=14% Similarity=0.181 Sum_probs=135.5
Q ss_pred cCCccccccccchhHHHHHHHHH-hcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC------------
Q 001395 769 VPKVKWEDVGGQREVKTQLMEAV-EWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 835 (1086)
Q Consensus 769 ~p~v~~~di~G~e~vk~~L~e~i-~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------ 835 (1086)
..+.+|++++|++.+++.++.++ .. .+.+. ++|+|||||||||+|+++|+++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQP------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 34568999999999998888776 31 12334 999999999999999999995311
Q ss_pred -----------------cEEEEeCCccccccccccHHHHHHHHHHHH--------------hcCCeEEEEecCchhhhhc
Q 001395 836 -----------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR--------------ANAPSIIFFDEIDGLAAIR 884 (1086)
Q Consensus 836 -----------------~fi~v~~sel~~~~vGese~~ir~lf~~A~--------------~~~p~ILflDEid~L~~~r 884 (1086)
+++.+++.+.. ......+++.++.+. ...|.||+|||++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---- 146 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---- 146 (354)
T ss_dssp -----------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS----
T ss_pred ecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc----
Confidence 12333322210 011113555555442 236779999999964
Q ss_pred CCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC
Q 001395 885 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS 964 (1086)
Q Consensus 885 ~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~ 964 (1086)
+...++.|+..|+.. ..++.+|++||+++.+.+++.+ || ..+.|++|+.+++.++++..+++.++.
T Consensus 147 ---------~~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 147 ---------TKDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp ---------CHHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred ---------CHHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 456778888888864 3478999999999999999998 88 789999999999999999888765543
Q ss_pred -C-cccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 965 -S-DVNIRELACLSEGCTGADISLICREAAIS 994 (1086)
Q Consensus 965 -~-d~~l~~La~~t~g~sgadl~~l~~~A~~~ 994 (1086)
. +..+..+++.+.| +.+++.++++.++..
T Consensus 213 ~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 213 LETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp ECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred CCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 3 4557888888877 566666666665544
No 127
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.52 E-value=1.7e-13 Score=154.83 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=131.7
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccc------cccc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE------VVSQ 483 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~------l~s~ 483 (1086)
+++++|.+.+++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.. +.+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 46899999988877665532 257999999999999999999999999999988731 2221
Q ss_pred cchhhHHHHHHHHHHhhcCC---CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc---------cCCCeeEEe
Q 001395 484 NYGESEQALHEVFDSASQSA---PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTDGVLVIA 551 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~~---P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~---------~~~~viVIa 551 (1086)
...... ...| ....+ .+||||||+|.+. ......|+..|+... ...++++|+
T Consensus 92 ~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 92 MIYNQH---KGNF--EVKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp EEEETT---TTEE--EEEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred eeecCC---CCce--EeccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 110000 0000 00112 2699999999872 455677777776521 234678888
Q ss_pred ccCCCC-----CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC------------------
Q 001395 552 ATNRPD-----SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM------------------ 608 (1086)
Q Consensus 552 tTN~~d-----~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~------------------ 608 (1086)
|+|..+ .+++++++ ||+..+.+ +.|+.+++.+|++..+...
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i--------------~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHL--------------TYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIR 219 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEEC--------------CCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHH
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEc--------------CCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHH
Confidence 888654 37899998 99878888 8999999999999987653
Q ss_pred ----ccccchHHHHHHHHHc-----C--------------CCcHHHHHHHHHHHHHHHHHH
Q 001395 609 ----EHSLLDSEVEYLSMAT-----H--------------GFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 609 ----~~~l~d~~l~~La~~t-----~--------------GfsgaDL~~L~~eA~~~a~rr 646 (1086)
+..+++..++.++... + |.+.+.+..+++.|...|.-+
T Consensus 220 ~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 220 NEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp HHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc
Confidence 2334555566655432 2 457888888888776666443
No 128
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=9.5e-15 Score=149.20 Aligned_cols=152 Identities=22% Similarity=0.364 Sum_probs=112.9
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----------CCcEEEE
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 840 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----------~~~fi~v 840 (1086)
...|++++|.+...+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 34688999999988887776642 345679999999999999999999886 7888888
Q ss_pred eCCccc--cccccccHHHHHHHHHHHHhc-CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEE
Q 001395 841 KGPELF--SKWVGESEKAVRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 917 (1086)
Q Consensus 841 ~~sel~--~~~vGese~~ir~lf~~A~~~-~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI 917 (1086)
++..+. ..+.|.....++.++..+... .|+||||||+|.+...+..... ...+++.|...++ ..++++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~----~~~~~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG----ALDAGNILKPMLA----RGELRCI 156 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT----SCCTHHHHHHHHH----TTCSCEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc----chHHHHHHHHHHh----cCCeeEE
Confidence 877664 334566666778888877655 6889999999998754431111 1223444444443 3578899
Q ss_pred EecCCCC-----CCChhhhCCCCcceEeecCCCC
Q 001395 918 AATNRPD-----KIDPALLRPGRFDRLLYVGPPN 946 (1086)
Q Consensus 918 ~aTN~p~-----~lD~aLlrpgRFd~~I~~~~P~ 946 (1086)
++||.++ .+|+++.+ ||+. ++++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 9999875 68999999 9984 8898885
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=9.7e-15 Score=149.12 Aligned_cols=147 Identities=22% Similarity=0.337 Sum_probs=109.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEcc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 477 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----------g~~~i~I~~ 477 (1086)
..+++++|.+.+++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 3467899999988888776633 246689999999999999999999987 778898988
Q ss_pred cccc--cccchhhHHHHHHHHHHhhcC-CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 478 PEVV--SQNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 478 s~l~--s~~~Gese~~l~~vf~~a~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
..+. ..+.|.....+..+++.+... .|.||||||+|.+.+.+..... ...+...|...++ .+++++|+++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~~~ 160 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGATT 160 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEEEC
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEecC
Confidence 7776 335677777788888876554 6789999999999755431111 1122333444443 46788999999
Q ss_pred CCC-----CCCccccCCCCcceeeeh
Q 001395 555 RPD-----SIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 555 ~~d-----~idpaL~r~GRfdr~I~i 575 (1086)
.++ .+++++++ ||+. +.+
T Consensus 161 ~~~~~~~~~~~~~l~~--R~~~-i~i 183 (187)
T 2p65_A 161 VSEYRQFIEKDKALER--RFQQ-ILV 183 (187)
T ss_dssp HHHHHHHTTTCHHHHH--HEEE-EEC
T ss_pred HHHHHHHHhccHHHHH--hcCc-ccC
Confidence 765 68899999 9984 777
No 130
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.51 E-value=5.9e-14 Score=153.57 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=119.6
Q ss_pred ccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC---CcEEEEeCCccccc
Q 001395 772 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSK 848 (1086)
Q Consensus 772 v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~---~~fi~v~~sel~~~ 848 (1086)
.+|++++|.+...+.+.+.+... ...+.+++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 46889999999998888777642 12356799999999999999999998864 78999999876321
Q ss_pred c-----ccccH----HH---HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-------
Q 001395 849 W-----VGESE----KA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------- 909 (1086)
Q Consensus 849 ~-----vGese----~~---ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~------- 909 (1086)
. .|... .. ....+.. ...++||||||+.+ ....+..|+..|+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA-------------PMMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGS-------------CHHHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhc-------------CHHHHHHHHHHHHhCCeecCCCc
Confidence 1 11100 00 0112222 23569999999966 4567888888887431
Q ss_pred --cCCCEEEEEecCCC-------CCCChhhhCCCCcceEeecCCCCHHHH----HHHHHHHHh----cCCCCC--ccc--
Q 001395 910 --QRVNVTVIAATNRP-------DKIDPALLRPGRFDRLLYVGPPNETDR----EEIFRIHLR----KIPCSS--DVN-- 968 (1086)
Q Consensus 910 --~~~~v~VI~aTN~p-------~~lD~aLlrpgRFd~~I~~~~P~~~eR----~~Il~~~l~----~~~l~~--d~~-- 968 (1086)
...++.||+|||.+ ..++++|.+ ||.. +.+..|+..+| ..+++.+++ ..+... ..+
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 13468899999985 246788888 8863 34445555443 444444443 233211 223
Q ss_pred -HHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 969 -IRELACLSEGCTGADISLICREAAISA 995 (1086)
Q Consensus 969 -l~~La~~t~g~sgadl~~l~~~A~~~A 995 (1086)
++.|....-..+.++++++++.++..+
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 344443332235689999999887655
No 131
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.51 E-value=4.9e-13 Score=151.80 Aligned_cols=195 Identities=22% Similarity=0.320 Sum_probs=142.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchh
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 487 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Ge 487 (1086)
..+++++|.+.+++.+...+.....+ + .++.+++|+||||||||||++++|+.++.++...++..+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~------~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR------G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH------T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc------C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 35678889998888887776554111 1 34578999999999999999999999999888777654422
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc----------------cCCCeeEEe
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 551 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~----------------~~~~viVIa 551 (1086)
...+..++... ....|+||||+|.+.+ .+...|+..++... ....+.+++
T Consensus 90 -~~~l~~~~~~~--~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 -QGDMAAILTSL--ERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -HHHHHHHHHHC--CTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -HHHHHHHHHHc--cCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 12233444332 2456999999998852 22334444443321 012477888
Q ss_pred ccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHH
Q 001395 552 ATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 631 (1086)
Q Consensus 552 tTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaD 631 (1086)
+|+++..+++++++ ||...+.+ ++|+.+++.+|++......+..+++..+..++.+++| +++.
T Consensus 156 at~~~~~Ls~~l~s--R~~l~~~L--------------d~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~ 218 (334)
T 1in4_A 156 ATTRSGLLSSPLRS--RFGIILEL--------------DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRI 218 (334)
T ss_dssp EESCGGGSCHHHHT--TCSEEEEC--------------CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHH
T ss_pred ecCCcccCCHHHHH--hcCceeeC--------------CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHH
Confidence 99999999999999 99766777 8999999999999988777777788889999999887 5678
Q ss_pred HHHHHHHHHHHHHH
Q 001395 632 LAALCNEAALVCLR 645 (1086)
Q Consensus 632 L~~L~~eA~~~a~r 645 (1086)
+.++++.+...|..
T Consensus 219 a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 219 AIRLTKRVRDMLTV 232 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887666644
No 132
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.50 E-value=1e-13 Score=154.60 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=134.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s 482 (1086)
..+++++|.+.+++.|++.+... ...++||+||||||||++|+++++.+ +..++.+++++..+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 34678999999998888765432 22349999999999999999999986 34578888876433
Q ss_pred ccchhhHHHHHHHHHHh-h-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 483 QNYGESEQALHEVFDSA-S-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a-~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
. ......+..+.... . ...+.||||||+|.+. ......|+..++.. ..++.+|++||.+..+.
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 82 I--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSCNYVSRII 146 (319)
T ss_dssp T--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSSS--SSSEEEEEEESCGGGSC
T ss_pred h--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCChhhcc
Confidence 1 12222233322111 1 2457899999999883 23445666666652 45788999999999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
+++++ |+. .+.+ ++|+.+++.++++..+...+..+++..++.++..+.| ..+.+.++++.+
T Consensus 147 ~~l~s--r~~-~i~~--------------~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 147 EPIQS--RCA-VFRF--------------KPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp HHHHT--TCE-EEEC--------------CCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred hHHHh--hCe-EEEe--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99988 775 6777 8999999999999999888878888899999987766 344444444433
No 133
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.3e-13 Score=156.34 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=135.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC------CcEEEEcccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG------VNLFTVNGPEVV 481 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg------~~~i~I~~s~l~ 481 (1086)
..+++++|.+++++.|...+... ...++||+||||||||++|+++|+.++ ..++.+++++..
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 45689999999998888776432 123499999999999999999998864 468888887642
Q ss_pred cccchhhHHHHHHHHHH------------hhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeE
Q 001395 482 SQNYGESEQALHEVFDS------------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 549 (1086)
Q Consensus 482 s~~~Gese~~l~~vf~~------------a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viV 549 (1086)
.. +.....+...... .....+.||||||+|.+. ......|+..|+... ....+
T Consensus 102 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~~--~~~~~ 166 (353)
T 1sxj_D 102 GI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETYS--GVTRF 166 (353)
T ss_dssp CH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT--TTEEE
T ss_pred ch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhcC--CCceE
Confidence 21 1111111111110 011345699999999884 234567888887643 45677
Q ss_pred EeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcH
Q 001395 550 IAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 629 (1086)
Q Consensus 550 IatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gfsg 629 (1086)
|+++|.++.+++++++ |+. .+.+ ++|+.++...+++..+...+..+++..++.++..+.|. .
T Consensus 167 il~~~~~~~l~~~l~s--R~~-~i~~--------------~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~ 228 (353)
T 1sxj_D 167 CLICNYVTRIIDPLAS--QCS-KFRF--------------KALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-L 228 (353)
T ss_dssp EEEESCGGGSCHHHHH--HSE-EEEC--------------CCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-H
T ss_pred EEEeCchhhCcchhhc--cCc-eEEe--------------CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-H
Confidence 7888999999999988 775 6666 89999999999999888777778889999999998874 4
Q ss_pred HHHHHHHHHHHHH
Q 001395 630 ADLAALCNEAALV 642 (1086)
Q Consensus 630 aDL~~L~~eA~~~ 642 (1086)
+.+.++++.+...
T Consensus 229 r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 229 RRGITLLQSASKG 241 (353)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 134
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=3.1e-13 Score=154.30 Aligned_cols=184 Identities=20% Similarity=0.274 Sum_probs=137.0
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----------------
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------- 471 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~----------------- 471 (1086)
.+++++|.+.+++.|++.+... ..+..+||+||||||||++|+++|+.++..
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4578999999999999887543 234578999999999999999999987542
Q ss_pred -------EEEEcccccccccchhhHHHHHHHHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc
Q 001395 472 -------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 540 (1086)
Q Consensus 472 -------~i~I~~s~l~s~~~Gese~~l~~vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~ 540 (1086)
++.+++..- .....++.+++.+. ...+.||||||+|.+. ......|+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~~le~ 145 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKTLEE 145 (373)
T ss_dssp HTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHHHHHS
T ss_pred hccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHHHHhc
Confidence 233333210 01123455555543 3346899999999883 3455677888876
Q ss_pred cccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHH
Q 001395 541 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620 (1086)
Q Consensus 541 l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~L 620 (1086)
. ..++++|++|+.+..+.+.+++ |+ ..+.+ ++|+.++..++++..+...+..+++..++.+
T Consensus 146 ~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~--------------~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l 206 (373)
T 1jr3_A 146 P--PEHVKFLLATTDPQKLPVTILS--RC-LQFHL--------------KALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 (373)
T ss_dssp C--CSSEEEEEEESCGGGSCHHHHT--TS-EEEEC--------------CCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred C--CCceEEEEEeCChHhCcHHHHh--he-eEeeC--------------CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3 4578899999988888888887 66 46666 8999999999999988877777788889999
Q ss_pred HHHcCCCcHHHHHHHHHHHH
Q 001395 621 SMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 621 a~~t~GfsgaDL~~L~~eA~ 640 (1086)
+..+.| ..+++.++++.+.
T Consensus 207 ~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 207 ARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHHSSS-CHHHHHHHHHHHH
T ss_pred HHHCCC-CHHHHHHHHHHHH
Confidence 999877 6677777776654
No 135
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=3.8e-13 Score=150.43 Aligned_cols=187 Identities=18% Similarity=0.219 Sum_probs=135.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg-----~~~i~I~~s~l~s 482 (1086)
..+++++|.+.+++.|+..+... ...++||+||||||||++|+++++.+. ..++.+++++..+
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 89 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc
Confidence 34688999999999998877543 223599999999999999999999863 3478888765422
Q ss_pred ccchhhHHHHHHHHHHh--hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 483 QNYGESEQALHEVFDSA--SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a--~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
. ......+....... ....+.||||||+|.+. ......|+..|+.. ..++.+|+++|.++.+.
T Consensus 90 ~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~ 154 (327)
T 1iqp_A 90 I--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF--SSNVRFILSCNYSSKII 154 (327)
T ss_dssp H--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCGGGSC
T ss_pred h--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCCccccC
Confidence 1 11112222222111 11457899999999883 23456777777763 45678889999999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHH
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 639 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA 639 (1086)
+++++ |+. .+.+ ++|+.++..++++..+...+..+++..++.++..+.| ..+.+.++++.+
T Consensus 155 ~~l~s--r~~-~~~~--------------~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 155 EPIQS--RCA-IFRF--------------RPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp HHHHH--TEE-EEEC--------------CCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHh--hCc-EEEe--------------cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 99887 775 5666 8899999999999998877777888899999998876 445555555433
No 136
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.49 E-value=1.9e-14 Score=191.42 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=99.8
Q ss_pred HHhhCchhhhhhhhhcCCccccccccchhHHHHHHHH-----------------HhcchhcHHHHHhh---CCCCCCCcc
Q 001395 754 RMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEA-----------------VEWPQKHQEAFKRI---GTRPPTGIL 813 (1086)
Q Consensus 754 l~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~-----------------i~~~l~~~~~~~~l---g~~~~~gvL 813 (1086)
+....|+++++...++|+++|++--....+.+.+... ..++...+++.+-+ |+.+...++
T Consensus 657 ~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lil 736 (2050)
T 3cmu_A 657 STTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 736 (2050)
T ss_dssp C----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEE
T ss_pred cccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEE
Confidence 3456688888888889999997532233333333211 12334456666666 477777799
Q ss_pred eeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccccc----cc--------ccHHHHHHHHHHHHh----cCCeEEEE
Q 001395 814 MFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG--------ESEKAVRSLFAKARA----NAPSIIFF 874 (1086)
Q Consensus 814 L~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~----vG--------ese~~ir~lf~~A~~----~~p~ILfl 874 (1086)
|+|+||+|||+||..+|... +.+++.++..+....+ .| ..+..+..++..++. ..|++|||
T Consensus 737 IaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVII 816 (2050)
T 3cmu_A 737 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 816 (2050)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEE
Confidence 99999999999999998765 4579999987765543 22 112234555555544 67999999
Q ss_pred ecCchhhh-hc--CCCC-CCCCccHHHHHHHHHHHhccccCCCEEEEEecCC
Q 001395 875 DEIDGLAA-IR--GKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 922 (1086)
Q Consensus 875 DEid~L~~-~r--~~~~-~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~ 922 (1086)
|.+..+.. .+ +..+ ...+...|.+++++..|..+....++.||++.+-
T Consensus 817 DsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 817 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp SCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 99999875 22 1111 1113346678999999998877788888887653
No 137
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.49 E-value=2.2e-13 Score=154.40 Aligned_cols=201 Identities=18% Similarity=0.207 Sum_probs=126.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE----Eccccc---
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT----VNGPEV--- 480 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~----I~~s~l--- 480 (1086)
..|++++|.+..++.+....... ...++||+||||||||++|+++++.++..... ++|...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 88 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMI 88 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGS
T ss_pred CCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccc
Confidence 45788999998766543322211 23469999999999999999999988631110 111110
Q ss_pred ------------------ccccchhhHHHH------HHHHHHhh---------cCCCeEEEEccchhhccCCCCCCchhH
Q 001395 481 ------------------VSQNYGESEQAL------HEVFDSAS---------QSAPAVVFIDELDAIAPARKDGGEELS 527 (1086)
Q Consensus 481 ------------------~s~~~Gese~~l------~~vf~~a~---------~~~P~ILfIDEiD~l~~~r~~~~~~~~ 527 (1086)
.....+.++..+ ...+.... ...++||||||+|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~----------- 157 (350)
T 1g8p_A 89 PDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE----------- 157 (350)
T ss_dssp CTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----------
T ss_pred cchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----------
Confidence 000011111111 11222210 1135799999999883
Q ss_pred HHHHHHHHHHhhcc----cc-------CCCeeEEeccCCCC-CCCccccCCCCcceeeehhhhhhhhhcccCCCCCC-CH
Q 001395 528 QRMVATLLNLMDGV----CR-------TDGVLVIAATNRPD-SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVP-SP 594 (1086)
Q Consensus 528 ~rv~~~Ll~lLd~l----~~-------~~~viVIatTN~~d-~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~P-d~ 594 (1086)
......|+..|+.- .. ..++++|+++|..+ .++++|++ ||+..+.+ +.| +.
T Consensus 158 ~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l--------------~~~~~~ 221 (350)
T 1g8p_A 158 DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEV--------------LSPRDV 221 (350)
T ss_dssp HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEEC--------------CCCCSH
T ss_pred HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEc--------------CCCCcH
Confidence 34566777777651 11 13688999999755 89999999 99887888 777 67
Q ss_pred HHHHHHHHHHHc-----------------------------cCccccchHHHHHHHHHcCCC---cHHHHHHHHHHHHHH
Q 001395 595 AQRLEILHALLS-----------------------------GMEHSLLDSEVEYLSMATHGF---VGADLAALCNEAALV 642 (1086)
Q Consensus 595 ~eR~~IL~~~l~-----------------------------~~~~~l~d~~l~~La~~t~Gf---sgaDL~~L~~eA~~~ 642 (1086)
+++.+|++..+. .....+++..++.++....+. +.+.+.++++.|...
T Consensus 222 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 222 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARAL 301 (350)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 777788866311 112356777778887775442 568888999888777
Q ss_pred HHHHh
Q 001395 643 CLRRY 647 (1086)
Q Consensus 643 a~rr~ 647 (1086)
|..+.
T Consensus 302 A~~~~ 306 (350)
T 1g8p_A 302 AALEG 306 (350)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 75443
No 138
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=3.1e-13 Score=153.53 Aligned_cols=208 Identities=21% Similarity=0.227 Sum_probs=143.1
Q ss_pred CCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhC-----CcEEEEeCCc
Q 001395 770 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGPE 844 (1086)
Q Consensus 770 p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~-----~~fi~v~~se 844 (1086)
.+.+|++++|++.+++.|...+.. | +.+ +++|+||||||||++|+++|+.+. ..++.+++++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 445789999999999998887763 1 223 399999999999999999999853 3477777765
Q ss_pred cccccccccHHHHHHHHHHHHh------cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEE
Q 001395 845 LFSKWVGESEKAVRSLFAKARA------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 918 (1086)
Q Consensus 845 l~~~~vGese~~ir~lf~~A~~------~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~ 918 (1086)
..+ ...++..+..... ..+.|++|||+|.+ ....++.|+..|+.. ..++.+|+
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~--~~~~~~il 145 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-------------TNAAQNALRRVIERY--TKNTRFCV 145 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-------------CHHHHHHHHHHHHHT--TTTEEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-------------CHHHHHHHHHHHhcC--CCCeEEEE
Confidence 321 2344444443331 23689999999976 345678888888854 35678888
Q ss_pred ecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 919 ATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIE 997 (1086)
Q Consensus 919 aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~-~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~ 997 (1086)
+||.++.+.+++.+ ||. .+.|++++.++..++++..++...+. .+..+..++..+.| +.+.+.++++.++..+..
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~ 221 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDN 221 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCS
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCC
Confidence 99999999999999 885 78899999999999998888544433 23346777877776 333333333332211100
Q ss_pred HhcCCCCCCHHHHHHHHHhh
Q 001395 998 ENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 998 ~~~~~~~It~~d~~~al~~~ 1017 (1086)
.....|+.+++..++...
T Consensus 222 --~~~~~it~~~v~~~~~~~ 239 (340)
T 1sxj_C 222 --PDEDEISDDVIYECCGAP 239 (340)
T ss_dssp --SSCCCBCHHHHHHHTTCC
T ss_pred --cccccccHHHHHHHhCCC
Confidence 011258888887766543
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=3.7e-13 Score=150.24 Aligned_cols=183 Identities=16% Similarity=0.190 Sum_probs=134.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s 482 (1086)
..+++++|.+.+++.|++.+... ..+ +++|+||||+|||++|+++++.+ +..++.+++.+..+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG-----------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 85 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC-----------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC
Confidence 34578999999999998887432 123 39999999999999999999986 34688888765322
Q ss_pred ccchhhHHHHHHHHHHhh-------cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 483 QNYGESEQALHEVFDSAS-------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a~-------~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
...++.+++... ...+.||||||+|.+. ......|+..++.. ..++.+|++||.
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~~~~ 146 (323)
T 1sxj_B 86 ------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMELY--SNSTRFAFACNQ 146 (323)
T ss_dssp ------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHHT--TTTEEEEEEESC
T ss_pred ------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHHHHHHHHHHhcc--CCCceEEEEeCC
Confidence 223444444332 2347899999999883 23345677777653 456788889999
Q ss_pred CCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHH
Q 001395 556 PDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 635 (1086)
Q Consensus 556 ~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L 635 (1086)
++.+.+++++ |+. .+.+ ++|+.++..++++..+...+..+++..++.++..+.|. .+.+.++
T Consensus 147 ~~~l~~~l~s--r~~-~i~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~ 208 (323)
T 1sxj_B 147 SNKIIEPLQS--QCA-ILRY--------------SKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINN 208 (323)
T ss_dssp GGGSCHHHHT--TSE-EEEC--------------CCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hhhchhHHHh--hce-EEee--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 9999999988 764 6666 99999999999999887766677888899999988774 4444444
Q ss_pred HHHH
Q 001395 636 CNEA 639 (1086)
Q Consensus 636 ~~eA 639 (1086)
++.+
T Consensus 209 l~~~ 212 (323)
T 1sxj_B 209 LQST 212 (323)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 140
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.47 E-value=7.8e-12 Score=172.35 Aligned_cols=360 Identities=17% Similarity=0.187 Sum_probs=184.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHH-HHHcCCcEEEEcccccccccchhhHHHHHHHHHHh----h------------cCCCe
Q 001395 443 PTKGVLLHGPPGTGKTSLARLC-AHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA----S------------QSAPA 505 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAral-A~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a----~------------~~~P~ 505 (1086)
.++++||+||||||||++++.+ ++..+..++.++++.-.+ ...+...++.. . .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 4678999999999999877654 444466778888776543 23334444421 0 12236
Q ss_pred EEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-------cCCCeeEEeccCCCC-----CCCccccCCCCcceee
Q 001395 506 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-------RTDGVLVIAATNRPD-----SIEPALRRPGRLDREI 573 (1086)
Q Consensus 506 ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-------~~~~viVIatTN~~d-----~idpaL~r~GRfdr~I 573 (1086)
|+||||++. +..+..+.+....++.++++.-.-+. .-.++.+|+|+|++. .+++++.| ||. .+
T Consensus 1377 VlFiDDiNm--p~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi 1451 (3245)
T 3vkg_A 1377 VVFCDEINL--PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-IL 1451 (3245)
T ss_dssp EEEETTTTC--CCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EE
T ss_pred EEEecccCC--CCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EE
Confidence 999999985 44444555544455555444211111 124688999999884 57888888 775 46
Q ss_pred ehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc---ccc---hHHHHH-------HHHH-------cCCCcHHHHH
Q 001395 574 EIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH---SLL---DSEVEY-------LSMA-------THGFVGADLA 633 (1086)
Q Consensus 574 ~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~---~l~---d~~l~~-------La~~-------t~GfsgaDL~ 633 (1086)
.+ +.|+.++...|+..++..... .+. +.-... +... ..-|+.+|+.
T Consensus 1452 ~i--------------~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLs 1517 (3245)
T 3vkg_A 1452 LV--------------DFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELS 1517 (3245)
T ss_dssp EC--------------CCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHH
T ss_pred Ee--------------CCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHH
Confidence 66 999999999998776543211 111 111111 1111 2346899999
Q ss_pred HHHHHHHHHHHHHhccccccccc--cccccccccccCCccccccccccccccccccccccccCCCCCCCCccccccCCcc
Q 001395 634 ALCNEAALVCLRRYSKIQTSSDV--LHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLP 711 (1086)
Q Consensus 634 ~L~~eA~~~a~rr~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 711 (1086)
++++...+. ..... ..+.... ++.++....+.++...+-+..++...+......+..... .... .+
T Consensus 1518 rv~qGll~~-~~~~~-~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~--~~~~----~~---- 1585 (3245)
T 3vkg_A 1518 RWDRALLEA-IQTMD-GCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVN--LDAL----KR---- 1585 (3245)
T ss_dssp HHHHHHHHH-HHTSS-CCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSC--GGGG----CS----
T ss_pred HHHHHHHHh-cCccc-cCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcch--hhhc----cc----
Confidence 988754332 21111 0011111 222233333333333222333333333222222211100 0000 00
Q ss_pred cccchHHHHhhccCCCCCCCCCCccccccccccccHHHHHHHHHhhCchhhhhhhhhcCCccccccccchhHHHHHHHHH
Q 001395 712 LRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAV 791 (1086)
Q Consensus 712 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vt~~Df~~Al~~~~ps~~re~~~e~p~v~~~di~G~e~vk~~L~e~i 791 (1086)
. ...+.+. ......++.+++.+.+... +.+.-.+... -+++--+++.+.+.+.
T Consensus 1586 --------------p--llf~~f~---~~~Y~~v~~~~l~~~l~~~----L~~yn~~~~~---m~LVlF~daleHv~RI- 1638 (3245)
T 3vkg_A 1586 --------------P--ILYSNWL---TKDYQPVNRSDLREYVKAR----LKVFYEEELD---VPLVLFNEVLDHILRI- 1638 (3245)
T ss_dssp --------------S--CCCCSSC---C----CCCHHHHHHHHHHH----HHTTC---------CCCCCHHHHHHHHHH-
T ss_pred --------------C--cchhhhc---cccCccCCHHHHHHHHHHH----HHHHHhcccC---ceEEeHHHHHHHHHHH-
Confidence 0 0000000 0112223344443322211 1111000000 1233333333333322
Q ss_pred hcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHH-HhcCCe
Q 001395 792 EWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA-RANAPS 870 (1086)
Q Consensus 792 ~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A-~~~~p~ 870 (1086)
.|+-..+..++||+|..|+||++|+|..|...+..++.+....-++ ..+....++.++.+| ..+.|.
T Consensus 1639 ----------~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~ 1706 (3245)
T 3vkg_A 1639 ----------DRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKI 1706 (3245)
T ss_dssp ----------HHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCE
T ss_pred ----------HHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCE
Confidence 2222345567999999999999999999999999999887654322 345677889999888 456788
Q ss_pred EEEEecCc
Q 001395 871 IIFFDEID 878 (1086)
Q Consensus 871 ILflDEid 878 (1086)
+++|+|-+
T Consensus 1707 vFL~tD~q 1714 (3245)
T 3vkg_A 1707 CFIFDESN 1714 (3245)
T ss_dssp EEEEEGGG
T ss_pred EEEEeccc
Confidence 88898743
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=3.9e-13 Score=153.41 Aligned_cols=201 Identities=15% Similarity=0.202 Sum_probs=140.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEcccccccc-
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEVVSQ- 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l------g~~~i~I~~s~l~s~- 483 (1086)
++++|.+++++.|.+.+... . .-..+..++|+||||||||++++++++.+ +..++.+++......
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~-~-------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPL-Y-------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGG-G-------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred CCCCChHHHHHHHHHHHHHH-H-------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 68999999999998876543 1 11456789999999999999999999988 888999997643211
Q ss_pred ---------------cchh-hHHHHHHHHHHhhcC-CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCC
Q 001395 484 ---------------NYGE-SEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 546 (1086)
Q Consensus 484 ---------------~~Ge-se~~l~~vf~~a~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~ 546 (1086)
..|. .......+++..... .|.||+|||+|.+..... ...+..|+..++.. ...+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~~~~ 163 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-NKSK 163 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-CC--
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-CCCe
Confidence 0111 223344455444433 489999999999864321 23455666666554 3457
Q ss_pred eeEEeccCCC---CCCCccccCCCCcc-eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC--ccccchHHHHHH
Q 001395 547 VLVIAATNRP---DSIEPALRRPGRLD-REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM--EHSLLDSEVEYL 620 (1086)
Q Consensus 547 viVIatTN~~---d~idpaL~r~GRfd-r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~--~~~l~d~~l~~L 620 (1086)
+.+|++||.+ +.+++.+++ ||. +.+.+ ++++.++..+|++..+... ...+++..++.+
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l--------------~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l 227 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKS--SLSEEEIIF--------------PPYNAEELEDILTKRAQMAFKPGVLPDNVIKLC 227 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEE--------------CCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHH
T ss_pred EEEEEEECCCChHhhhCHHHhc--cCCCeeEEe--------------CCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 8899999877 456777777 664 46777 9999999999999877532 234677778888
Q ss_pred HHHcC---CCcHHHHHHHHHHHHHHHH
Q 001395 621 SMATH---GFVGADLAALCNEAALVCL 644 (1086)
Q Consensus 621 a~~t~---GfsgaDL~~L~~eA~~~a~ 644 (1086)
+..+. | .++.+..+++.|...+.
T Consensus 228 ~~~~~~~~G-~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 228 AALAAREHG-DARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 88876 5 45666678887765553
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=1.2e-12 Score=150.03 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=141.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCC--eEEEEcCCCChHHHHHHHHHHHc----CCcEEEEccccccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTK--GVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQN 484 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~--~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~s~l~s~~ 484 (1086)
++++|.+++++.|.+.+... .. + ..+. .++|+||||||||++++++++.+ +..++.++|.......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~-~~------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNW-LR------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHH-HH------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHH-Hc------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 67999999999999988654 11 1 2334 89999999999999999999988 6788999976643210
Q ss_pred ----------------chhh-HHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcccc--C
Q 001395 485 ----------------YGES-EQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--T 544 (1086)
Q Consensus 485 ----------------~Ges-e~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~--~ 544 (1086)
.+.. ......+.+... ...|.||||||+|.+ ....+..|+.+++.... .
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCCCCc
Confidence 0111 122222222222 245889999999988 24566777777766532 1
Q ss_pred CCeeEEeccCCC---CCCCccccCCCCcce-eeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHcc--CccccchHHHH
Q 001395 545 DGVLVIAATNRP---DSIEPALRRPGRLDR-EIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSG--MEHSLLDSEVE 618 (1086)
Q Consensus 545 ~~viVIatTN~~---d~idpaL~r~GRfdr-~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~--~~~~l~d~~l~ 618 (1086)
.++.+|+++|.+ +.+++.+.+ ||.. .+.+ ++++.++..++++..+.. ....+++..++
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~--------------~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRF--------------SPYTKDQIFDILLDRAKAGLAEGSYSEDILQ 221 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEEC--------------CCCBHHHHHHHHHHHHHHHBCTTSSCHHHHH
T ss_pred CCEEEEEEECCchHHHHhCHHhhh--cCCCceEEe--------------CCCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 478899999987 567777766 6654 5666 999999999999988764 12356788899
Q ss_pred HHHHHcC--------CCcHHHHHHHHHHHHHHHHH
Q 001395 619 YLSMATH--------GFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 619 ~La~~t~--------GfsgaDL~~L~~eA~~~a~r 645 (1086)
.++..+. +-..+.+.++++.|...|..
T Consensus 222 ~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 222 MIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999984 23567788888888766644
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=6.5e-13 Score=151.02 Aligned_cols=186 Identities=16% Similarity=0.196 Sum_probs=129.2
Q ss_pred ccccccCCcHHHHHHHHHHH-HhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----------------
Q 001395 408 QDISKLGGLSKEYAILKDII-ISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV---------------- 470 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i-~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~---------------- 470 (1086)
..+++++|.+.+++.++..+ ... ..+. ++|+||+||||||+++++++.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~-----------~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPR-----------DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTT-----------CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCC-----------CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 34678999999888887765 221 1233 999999999999999999996411
Q ss_pred -------------cEEEEcccccccccchhhHHHHHHHHHHhh--------------cCCCeEEEEccchhhccCCCCCC
Q 001395 471 -------------NLFTVNGPEVVSQNYGESEQALHEVFDSAS--------------QSAPAVVFIDELDAIAPARKDGG 523 (1086)
Q Consensus 471 -------------~~i~I~~s~l~s~~~Gese~~l~~vf~~a~--------------~~~P~ILfIDEiD~l~~~r~~~~ 523 (1086)
.++.+++.+... .....++..++.+. ...|.||+|||++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-------- 146 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-------- 146 (354)
T ss_dssp -------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS--------
T ss_pred ccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc--------
Confidence 123333222100 01112444444332 236779999999886
Q ss_pred chhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHH
Q 001395 524 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHA 603 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~ 603 (1086)
+......|+..|+.. ..++.+|.+||.++.+.+++++ |+ ..+.+ ++|+.+++.++++.
T Consensus 147 ---~~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~--------------~~~~~~~~~~~l~~ 204 (354)
T 1sxj_E 147 ---TKDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRC--------------PAPSDSEISTILSD 204 (354)
T ss_dssp ---CHHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEEC--------------CCCCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEec--------------CCcCHHHHHHHHHH
Confidence 234566788888765 3467889999999999999988 77 56777 99999999999999
Q ss_pred HHccCccccc-hHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 001395 604 LLSGMEHSLL-DSEVEYLSMATHGFVGADLAALCNEAA 640 (1086)
Q Consensus 604 ~l~~~~~~l~-d~~l~~La~~t~GfsgaDL~~L~~eA~ 640 (1086)
.+...+..++ +..++.++..+.| ..+++.++++.+.
T Consensus 205 ~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 205 VVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp HHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9887777778 8889999998876 4555555555443
No 144
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.43 E-value=5.3e-12 Score=173.34 Aligned_cols=128 Identities=20% Similarity=0.310 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG 523 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~ 523 (1086)
..++++.||+|||||++++++|+.+|.+++.++|++-+.. ..+..+|..+...+ +++++||++.+-+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~~~------ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRLDE------ 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSSCH------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhcCh------
Confidence 4789999999999999999999999999999999876542 44567777655443 6999999988731
Q ss_pred chhHHHHHHHHHHHhhcc--------------ccCCCeeEEeccCC----CCCCCccccCCCCcceeeehhhhhhhhhcc
Q 001395 524 EELSQRMVATLLNLMDGV--------------CRTDGVLVIAATNR----PDSIEPALRRPGRLDREIEIDMSFLFSLLK 585 (1086)
Q Consensus 524 ~~~~~rv~~~Ll~lLd~l--------------~~~~~viVIatTN~----~d~idpaL~r~GRfdr~I~i~l~~~~~~~~ 585 (1086)
+....+..++..+++.+ .....+.|++|.|+ ...+++++++ || +.+.+
T Consensus 712 -evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m---------- 777 (2695)
T 4akg_A 712 -KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSM---------- 777 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEEC----------
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEe----------
Confidence 22222222222222211 11245667888884 3467888887 77 56777
Q ss_pred cCCCCCCCHHHHHHHHH
Q 001395 586 NSPAAVPSPAQRLEILH 602 (1086)
Q Consensus 586 ~v~~~~Pd~~eR~~IL~ 602 (1086)
..||.+...+|+-
T Consensus 778 ----~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 778 ----KSPQSGTIAEMIL 790 (2695)
T ss_dssp ----CCCCHHHHHHHHH
T ss_pred ----eCCCHHHHHHHHH
Confidence 8899988888754
No 145
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.42 E-value=8.6e-13 Score=157.22 Aligned_cols=198 Identities=18% Similarity=0.117 Sum_probs=125.3
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEccc-----ccccc
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGP-----EVVSQ 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s-----~l~s~ 483 (1086)
..|+|.+++++.+...+.. +.++||+||||||||++|+++|+.++. +|..+++. ++++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4688999888766554422 358999999999999999999998843 45555442 33332
Q ss_pred cchhhHHHHHHHHHHhhcC---CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--------cCCCeeEEec
Q 001395 484 NYGESEQALHEVFDSASQS---APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------RTDGVLVIAA 552 (1086)
Q Consensus 484 ~~Gese~~l~~vf~~a~~~---~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--------~~~~viVIat 552 (1086)
+.+..... ...|..+..+ .++|||||||+.+ ...+...|+..|+.-. ..+..++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 22221111 2223322222 4679999999865 3567788888886421 1122356788
Q ss_pred cCCCCC---CCccccCCCCcceeeehhhhhhhhhcccCCCCCCCH-HHHHHHHHHHHccC--------------------
Q 001395 553 TNRPDS---IEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSP-AQRLEILHALLSGM-------------------- 608 (1086)
Q Consensus 553 TN~~d~---idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~-~eR~~IL~~~l~~~-------------------- 608 (1086)
||++.. ..+++.+ ||...+.+ +.|+. +++.+|++......
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v--------------~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~ 219 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWL--------------DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQK 219 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEEC--------------CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHH--------------HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHh
Confidence 886432 3357887 89877888 88887 77888887654211
Q ss_pred ---ccccchHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHhccc
Q 001395 609 ---EHSLLDSEVEYLSMAT---------HGFVGADLAALCNEAALVCLRRYSKI 650 (1086)
Q Consensus 609 ---~~~l~d~~l~~La~~t---------~GfsgaDL~~L~~eA~~~a~rr~~~~ 650 (1086)
...+++..++.++... .|.+++.+..+++.|...|..+.+..
T Consensus 220 ~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~ 273 (500)
T 3nbx_X 220 EIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSA 273 (500)
T ss_dssp HHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred cCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCcc
Confidence 2234555556665544 47889999999988877776655443
No 146
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.41 E-value=3.5e-12 Score=169.96 Aligned_cols=115 Identities=24% Similarity=0.343 Sum_probs=85.0
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccc----ccccc------------ccHHHHHHHHHHHH
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF----SKWVG------------ESEKAVRSLFAKAR 865 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~----~~~vG------------ese~~ir~lf~~A~ 865 (1086)
|++++++++|+||||||||+||.+++.+. |.....++..+.+ .+..| ..++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37888899999999999999999997664 5566667765432 11122 34677888888899
Q ss_pred hcCCeEEEEecCchhhhhc---CCCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEe
Q 001395 866 ANAPSIIFFDEIDGLAAIR---GKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAA 919 (1086)
Q Consensus 866 ~~~p~ILflDEid~L~~~r---~~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~a 919 (1086)
..+|++|||||++.+.+.+ +..+++ .....++++++|.+|.+.....+++||++
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 9999999999999888743 322221 12247889999999998877777777665
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.41 E-value=1e-12 Score=143.67 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=120.1
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEcccccccccc
Q 001395 409 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNY 485 (1086)
Q Consensus 409 ~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg---~~~i~I~~s~l~s~~~ 485 (1086)
+|++++|.+..+..+.+.+... . ..+.++||+||||||||++|+++++.++ .+|+.++|+.+.....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~-~---------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHL-A---------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ------CCCHHHHHHHHHHHHH-T---------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHH-h---------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 4578899999999888877654 1 2346899999999999999999999874 6899999987643211
Q ss_pred -----hhhHH-------HHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc---------cC
Q 001395 486 -----GESEQ-------ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RT 544 (1086)
Q Consensus 486 -----Gese~-------~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~---------~~ 544 (1086)
|.... .....|+.+ ...+|||||+|.+. ......|+..|+... ..
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCccccc
Confidence 10000 001123333 24599999999883 345667777777521 12
Q ss_pred CCeeEEeccCCC-------CCCCccccCCCCcce-eeehhhhhhhhhcccCCCCCCCH--HHHHHHHHHHHc----cCcc
Q 001395 545 DGVLVIAATNRP-------DSIEPALRRPGRLDR-EIEIDMSFLFSLLKNSPAAVPSP--AQRLEILHALLS----GMEH 610 (1086)
Q Consensus 545 ~~viVIatTN~~-------d~idpaL~r~GRfdr-~I~i~l~~~~~~~~~v~~~~Pd~--~eR~~IL~~~l~----~~~~ 610 (1086)
.++.+|++||.. ..+.++|.+ ||.. .+.+ |+... ++...+++.++. ..+.
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~l--------------p~L~~R~~di~~l~~~~l~~~~~~~~~ 203 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQL--------------PPLRERESDIMLMAEYFAIQMCREIKL 203 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEEC--------------CCGGGCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeC--------------CChhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 467899999974 235566665 6642 2333 33332 344444444332 2222
Q ss_pred ----ccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 001395 611 ----SLLDSEVEYLSMATHGFVGADLAALCNEAALVC 643 (1086)
Q Consensus 611 ----~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a 643 (1086)
.+++..++.+.........+++.++++.+...+
T Consensus 204 ~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 204 PLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp SSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred CcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 467778888877655556788888888776443
No 148
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=8.5e-14 Score=169.71 Aligned_cols=220 Identities=20% Similarity=0.197 Sum_probs=140.7
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEE----eCCccccccc
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV----KGPELFSKWV 850 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v----~~sel~~~~v 850 (1086)
..++|++.+|+.+...+... .+........+...++||+||||||||++|+++|+.++..++.. ++.++....+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 46889999887764443321 00000001123344799999999999999999999887665542 2233322221
Q ss_pred cccH-HH---HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-----------cCCCEE
Q 001395 851 GESE-KA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVT 915 (1086)
Q Consensus 851 Gese-~~---ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-----------~~~~v~ 915 (1086)
.... .. ....+..| ..+||||||||.+ ....++.|+..|+... ...++.
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l-------------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKM-------------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCC-------------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhC-------------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 1100 00 01122233 3459999999965 4567888999987432 124678
Q ss_pred EEEecCCCC-------------CCChhhhCCCCcce-EeecCCCCHHHHHHHHHHHHhcCC-------------------
Q 001395 916 VIAATNRPD-------------KIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRKIP------------------- 962 (1086)
Q Consensus 916 VI~aTN~p~-------------~lD~aLlrpgRFd~-~I~~~~P~~~eR~~Il~~~l~~~~------------------- 962 (1086)
||+|||.+. .+++++++ |||. .+..+.|+.+ ...|+++.++...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 999999886 89999999 9985 5556667666 7777777665322
Q ss_pred -------CCCcccHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 963 -------CSSDVNIRELACL--------------SEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 963 -------l~~d~~l~~La~~--------------t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
...+...+.|... ..+.|.|.+.++++-|...|..+. ...|+.+|+.+|+.-+
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~--~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL--KAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS--SCCSSHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC--cCCCCHHHHHHHHHHH
Confidence 1112223344443 346788999999998888776554 5679999999998654
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.39 E-value=1.9e-13 Score=136.40 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=84.8
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccc
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE 852 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGe 852 (1086)
+++|.+...+.+.+.+... .....++||+||||||||++|++++... +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5788888888888877632 2345679999999999999999999886 78999 999887543
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 853 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 853 se~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
......|..+. .++|||||||.+ ....+..|+..|... ..++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l-------------~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHL-------------TREQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGS-------------CHHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHC-------------CHHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 23344566554 459999999966 456788888888533 4468899999976
No 150
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.36 E-value=2.7e-12 Score=157.03 Aligned_cols=217 Identities=20% Similarity=0.292 Sum_probs=139.6
Q ss_pred hcCCccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC---cEEEEeCCc
Q 001395 768 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL---NFLAVKGPE 844 (1086)
Q Consensus 768 e~p~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~---~fi~v~~se 844 (1086)
..+...|++++|++.+++.+...+.. ...++|+|||||||||+|++||+.+.. ..+.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 34566889999999999888777652 357999999999999999999998642 222222211
Q ss_pred cc--cc------------------------------------------------------cccccHHHHHHHHH------
Q 001395 845 LF--SK------------------------------------------------------WVGESEKAVRSLFA------ 862 (1086)
Q Consensus 845 l~--~~------------------------------------------------------~vGese~~ir~lf~------ 862 (1086)
.- .. ++.+.......+|.
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 10 00 00000000111111
Q ss_pred -----------------HHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc----------------
Q 001395 863 -----------------KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------------- 909 (1086)
Q Consensus 863 -----------------~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------------- 909 (1086)
......+++|||||++.+ ...+++.|++.|+...
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhC-------------CHHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 112235679999999965 4678889999987321
Q ss_pred ---cCCCEEEEEecCCC--CCCChhhhCCCCcc---eEeecCCC---CHHHHHHHHHHHHhcC------CCCCcccHHHH
Q 001395 910 ---QRVNVTVIAATNRP--DKIDPALLRPGRFD---RLLYVGPP---NETDREEIFRIHLRKI------PCSSDVNIREL 972 (1086)
Q Consensus 910 ---~~~~v~VI~aTN~p--~~lD~aLlrpgRFd---~~I~~~~P---~~~eR~~Il~~~l~~~------~l~~d~~l~~L 972 (1086)
...++.||+|||+. +.++++|++ ||+ ..+.|+.. ..+....+++...+.. ....+..+..|
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 12478899999987 679999999 996 45565432 2344555554443321 11233345555
Q ss_pred HHHc---CCC------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 001395 973 ACLS---EGC------TGADISLICREAAISAIEENLDASRITMQHLKTAIRH 1016 (1086)
Q Consensus 973 a~~t---~g~------sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~ 1016 (1086)
.+.. .|- +.+++.++++.|...|..+. ...|+.+|+..|+..
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~--~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG--KKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC--cccccHHHHHHHHHh
Confidence 5533 442 68999999999987776554 567999999999865
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=7.8e-12 Score=141.98 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=125.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----cEEEEccccccc
Q 001395 408 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----NLFTVNGPEVVS 482 (1086)
Q Consensus 408 ~~l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~-----~~i~I~~s~l~s 482 (1086)
..|++++|.+.+++.|+..+... ..+ +++|+||||||||++|+++|+.+.. .++.+++++..+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g-----------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 89 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEG-----------KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG 89 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT-----------CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc
Confidence 45678999999999888877543 112 3999999999999999999998632 467777765321
Q ss_pred ccchhhHHHHHHHHHHh--hcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCC
Q 001395 483 QNYGESEQALHEVFDSA--SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 560 (1086)
Q Consensus 483 ~~~Gese~~l~~vf~~a--~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~id 560 (1086)
.......+..+.+.. ....+.|++|||+|.+. ......|+..|+.. ...+.+|++||.+..+.
T Consensus 90 --~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~~n~~~~i~ 154 (340)
T 1sxj_C 90 --IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY--TKNTRFCVLANYAHKLT 154 (340)
T ss_dssp --HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEESCGGGSC
T ss_pred --HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC--CCCeEEEEEecCccccc
Confidence 111112222222111 11236899999999883 23456788888764 35677888899999999
Q ss_pred ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCC
Q 001395 561 PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 626 (1086)
Q Consensus 561 paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~G 626 (1086)
+++++ |+. .+.+ +.++.++..++++..+...+..+++..++.++..+.|
T Consensus 155 ~~i~s--R~~-~~~~--------------~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 155 PALLS--QCT-RFRF--------------QPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp HHHHT--TSE-EEEC--------------CCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred hhHHh--hce-eEec--------------cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998 775 5666 8888999999999888766666778888888887766
No 152
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.34 E-value=1.3e-11 Score=140.17 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=115.2
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCC------------------------cEEEEeCCccccccccccHHHHHHHHH
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 862 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~------------------------~fi~v~~sel~~~~vGese~~ir~lf~ 862 (1086)
+.+..+||+||+|||||++|+++|+.+.. +++.+.+.+- +. .-....++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHH
Confidence 45667999999999999999999988643 2444443210 00 123456778777
Q ss_pred HHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcce
Q 001395 863 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 938 (1086)
Q Consensus 863 ~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~ 938 (1086)
.+.. +...|++|||+|.+ +...++.|++.|+. +..++++|++||.++.+.+++.+ |+ .
T Consensus 99 ~~~~~~~~~~~kvviIdead~l-------------~~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALL-------------TDAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-R 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGB-------------CHHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-E
T ss_pred HHhhccccCCcEEEEECchhhc-------------CHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-e
Confidence 7653 34689999999976 45678899999985 35678999999999999999999 87 4
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 001395 939 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICRE 990 (1086)
Q Consensus 939 ~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~ 990 (1086)
.+.|++|+.++..++++... .+ .+..+..+++.+.| +.+.+.++++.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 79999999999999888765 22 34456778888877 44444444443
No 153
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.34 E-value=1.4e-13 Score=136.94 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=84.7
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHH
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEK 855 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~ 855 (1086)
+++|.+...+++++.+... ...+.+++|+||||||||++|++++.... +|+.+++.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 5788999988888887642 13456799999999999999999998888 99999998865433
Q ss_pred HHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 856 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 856 ~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
.+..|..+. .++|||||+|.+ ....+..|+..|+... ..++.+|+|||++
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-------------~~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-------------SRNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-------------CHHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-------------CHHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 345566554 469999999966 4567778888887542 4578899999876
No 154
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.34 E-value=3e-12 Score=143.58 Aligned_cols=197 Identities=22% Similarity=0.221 Sum_probs=123.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc---
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN--- 484 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~--- 484 (1086)
++|+|.++.++.+.+.+... ...+.++||+||||||||++|+++++.. +.+|+.++|..+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 36889999999988887664 1346789999999999999999999865 5689999998764321
Q ss_pred ----------chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc---------cCC
Q 001395 485 ----------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTD 545 (1086)
Q Consensus 485 ----------~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~---------~~~ 545 (1086)
.|... .....|+.+. .++|||||||.+. ......|+..|+... ...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCcccccC
Confidence 11111 1123455553 3599999999883 345667888887532 123
Q ss_pred CeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCH----HHHHHHHHHHHccC-------ccccch
Q 001395 546 GVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSP----AQRLEILHALLSGM-------EHSLLD 614 (1086)
Q Consensus 546 ~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~----~eR~~IL~~~l~~~-------~~~l~d 614 (1086)
++.||++||.. +. .+...|+|+..+.. .+..+.+..|.. ++...+++.++... ...+++
T Consensus 137 ~~riI~atn~~--l~-~~v~~g~fr~~L~~-------Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~ 206 (304)
T 1ojl_A 137 DVRLIAATHRD--LA-EEVSAGRFRQDLYY-------RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP 206 (304)
T ss_dssp CCEEEEEESSC--HH-HHHHHTSSCHHHHH-------HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH
T ss_pred CeEEEEecCcc--HH-HHHHhCCcHHHHHh-------hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH
Confidence 58899999975 11 12223444322111 111222234443 44444555554321 134677
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 615 ~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
..++.+.......+.+++.+++..+...
T Consensus 207 ~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 207 QAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp HHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 8888888876445778888888877643
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.27 E-value=9.4e-11 Score=135.45 Aligned_cols=226 Identities=10% Similarity=0.086 Sum_probs=148.4
Q ss_pred cccccccchhHHHHHHHHH-hcchhcHHHHHhhCC-CCCCCcce--eCCCCCcchHHHHHHHHHh---------CCcEEE
Q 001395 773 KWEDVGGQREVKTQLMEAV-EWPQKHQEAFKRIGT-RPPTGILM--FGPPGCSKTLMARAVASEA---------GLNFLA 839 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i-~~~l~~~~~~~~lg~-~~~~gvLL--~GPpGTGKTtLAkalA~~~---------~~~fi~ 839 (1086)
..++++|.+...+.|.+.+ ..... +. ..+..++| +||+|||||++|+++++.. +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3477899999888888877 43110 10 23456889 9999999999999998775 567788
Q ss_pred EeCCcccc------c---c-------ccccHHH-HHHHHHHHH-hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHH
Q 001395 840 VKGPELFS------K---W-------VGESEKA-VRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 901 (1086)
Q Consensus 840 v~~sel~~------~---~-------vGese~~-ir~lf~~A~-~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~L 901 (1086)
+++..... . . .+..... ...+..... ...|.||+|||+|.+...+ ......+..+
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-------~~~~~~l~~l 164 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-------RIAAEDLYTL 164 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-------TSCHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-------CcchHHHHHH
Confidence 88643211 0 0 0111122 222222222 3558899999999885321 0134566666
Q ss_pred HHHHhccc-cC--CCEEEEEecCCCCC---CC---hhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCC---CCCcccH
Q 001395 902 LVELDGLH-QR--VNVTVIAATNRPDK---ID---PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP---CSSDVNI 969 (1086)
Q Consensus 902 L~~Ld~~~-~~--~~v~VI~aTN~p~~---lD---~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~---l~~d~~l 969 (1086)
+..++... .. .++.||++||.++. ++ +.+.+ ||...+.+++++.++..++++..+.... ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 66665432 12 57889999987653 34 66666 6666699999999999999987765321 1233457
Q ss_pred HHHHHHcC------CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 970 RELACLSE------GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 970 ~~La~~t~------g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
..+++.+. | ..+.+..+++.|+..+..+. ...++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~--~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMG--RDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHh
Confidence 77888888 7 46678888888887776543 45688999988876653
No 156
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.27 E-value=9.7e-12 Score=123.90 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=83.0
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhh
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Ges 488 (1086)
+|+|.++.++.+++.+... ...+.+|||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 5788899888888877654 1345679999999999999999999876 67889 999877554
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 489 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 489 e~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
......|+.+.. ++|||||+|.+. ......|+..|.. ...++.+|++||.+
T Consensus 66 -~~~~~~~~~a~~---g~l~ldei~~l~-----------~~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQG---GTLVLSHPEHLT-----------REQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHTT---SCEEEECGGGSC-----------HHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcCC---cEEEEcChHHCC-----------HHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 223455666644 489999999883 3456677777744 34467889999874
No 157
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.24 E-value=4.1e-12 Score=126.40 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=83.7
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHH
Q 001395 412 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQA 491 (1086)
Q Consensus 412 ~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~ 491 (1086)
+++|.++.++.+++.+... . ..+.+|||+||||||||++|+++++..+ +|+.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-~---------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-A---------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-H---------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHH-h---------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 5789999999998888654 1 2356799999999999999999999887 99999998775433
Q ss_pred HHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 492 LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 492 l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
...+|+.+. ..+|||||+|.+. ......|+..|+... ..++.+|++||..
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYS-----------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCC-----------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCC-----------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455676664 3599999999883 344566777776542 4567889999864
No 158
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=5e-11 Score=133.74 Aligned_cols=142 Identities=11% Similarity=0.143 Sum_probs=109.9
Q ss_pred cchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh------CCcEEEEeCCccccccccc
Q 001395 779 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------GLNFLAVKGPELFSKWVGE 852 (1086)
Q Consensus 779 G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~------~~~fi~v~~sel~~~~vGe 852 (1086)
|++++.+.|+..+.. + + ...+|||||||||||++|+++|+.+ ..+++.+++++- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 677788888887763 1 2 4569999999999999999999863 457777776521 12
Q ss_pred cHHHHHHHHHHHHhc----CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCCh
Q 001395 853 SEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 928 (1086)
Q Consensus 853 se~~ir~lf~~A~~~----~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~ 928 (1086)
....+|++++.+... ...|+||||+|.+ +...++.|++.|+. +..++++|++||.++.+.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-------------t~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-------------TQQAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-------------CHHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-------------CHHHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 345678888887543 2479999999976 45678999999985 4567888888999999999
Q ss_pred hhhCCCCcceEeecCCCCHHHHHHHHHHHH
Q 001395 929 ALLRPGRFDRLLYVGPPNETDREEIFRIHL 958 (1086)
Q Consensus 929 aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l 958 (1086)
++.+ | ++.|++|+.++..+.++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 88999999999999888776
No 159
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=2.5e-12 Score=156.75 Aligned_cols=205 Identities=16% Similarity=0.165 Sum_probs=124.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE----cccccccccch
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV----NGPEVVSQNYG 486 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I----~~s~l~s~~~G 486 (1086)
..|.|++.+++.+.-.+... .+..+....+....++||+||||||||++|+++|+.++..++.. ++.++......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 47899998776653322111 00001112233445899999999999999999999987665442 23333322211
Q ss_pred -----hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-----------cCCCeeEE
Q 001395 487 -----ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVI 550 (1086)
Q Consensus 487 -----ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-----------~~~~viVI 550 (1086)
+.... ...+..|. .+|+||||||.+. ......|+..|+.-. ...++.||
T Consensus 374 ~~~~g~~~~~-~G~l~~A~---~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLAD---GGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCSEE-ECHHHHHS---SSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccccc-CCeeEecC---CCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11000 11122332 3599999999883 345577888887532 12467899
Q ss_pred eccCCCC-------------CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc-------
Q 001395 551 AATNRPD-------------SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH------- 610 (1086)
Q Consensus 551 atTN~~d-------------~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~------- 610 (1086)
+|||+.+ .+++++++ |||..+.+ .+.|+.+ ...|++..+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~-------------~~~~~~e-~~~i~~~il~~~~~~~~~~~l 502 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFIL-------------KDQPGEQ-DRELANYILDVHSGKSTKNII 502 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEE-------------CCTTHHH-HHHHHHHHHTTTCCCSSSSTT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEe-------------CCCCCHH-HHHHHHHHHHHhhccccccCC
Confidence 9999986 88999999 99865544 1667777 77888777654221
Q ss_pred ------------------ccchHHHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHHHHh
Q 001395 611 ------------------SLLDSEVEYLSMA--------------THGFVGADLAALCNEAALVCLRRY 647 (1086)
Q Consensus 611 ------------------~l~d~~l~~La~~--------------t~GfsgaDL~~L~~eA~~~a~rr~ 647 (1086)
.+++...+.+... ..+.+.+.+.++++.|...|..+.
T Consensus 503 ~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~ 571 (595)
T 3f9v_A 503 DIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL 571 (595)
T ss_dssp CCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC
Confidence 2223333444443 346777888888887776665443
No 160
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=1.1e-10 Score=132.55 Aligned_cols=170 Identities=16% Similarity=0.223 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------c
Q 001395 416 LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------N 471 (1086)
Q Consensus 416 l~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~------------------------~ 471 (1086)
+++.++.+...+... +.+..+||+||||+|||++|+++|+.+.. .
T Consensus 7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 456666666665433 34567999999999999999999998753 2
Q ss_pred EEEEcccccccccchhhHHHHHHHHHHhhc----CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCe
Q 001395 472 LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV 547 (1086)
Q Consensus 472 ~i~I~~s~l~s~~~Gese~~l~~vf~~a~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~v 547 (1086)
++.+++.+- +.. -.-..++.+++.+.. ....|++|||+|.+. ....+.|+..|+. ...++
T Consensus 76 ~~~~~~~~~-~~~--~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe--p~~~~ 139 (334)
T 1a5t_A 76 YYTLAPEKG-KNT--LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE--PPAET 139 (334)
T ss_dssp EEEECCCTT-CSS--BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS--CCTTE
T ss_pred EEEEecccc-CCC--CCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC--CCCCe
Confidence 344443210 011 122346677766542 346899999999883 3456778888876 34578
Q ss_pred eEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCC
Q 001395 548 LVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 627 (1086)
Q Consensus 548 iVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~Gf 627 (1086)
++|.+||.++.+.+++++ |+. .+.+ ++|+.++..++++... .+++..++.++..+.|
T Consensus 140 ~~Il~t~~~~~l~~ti~S--Rc~-~~~~--------------~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G- 196 (334)
T 1a5t_A 140 WFFLATREPERLLATLRS--RCR-LHYL--------------APPPEQYAVTWLSREV-----TMSQDALLAALRLSAG- 196 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEEC--------------CCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-
T ss_pred EEEEEeCChHhCcHHHhh--cce-eeeC--------------CCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-
Confidence 899999999999999998 774 5666 9999999999988764 3467777888888776
Q ss_pred cHHHHHHH
Q 001395 628 VGADLAAL 635 (1086)
Q Consensus 628 sgaDL~~L 635 (1086)
..+.+.++
T Consensus 197 ~~r~a~~~ 204 (334)
T 1a5t_A 197 SPGAALAL 204 (334)
T ss_dssp CHHHHHHT
T ss_pred CHHHHHHH
Confidence 33333333
No 161
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.22 E-value=1.1e-11 Score=143.70 Aligned_cols=205 Identities=21% Similarity=0.259 Sum_probs=131.9
Q ss_pred cccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccc-----
Q 001395 775 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF----- 846 (1086)
Q Consensus 775 ~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~----- 846 (1086)
..++|.....+++.+.+... ......++|+|++|||||++|+++.... +.+|+.++|..+.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45677777777776666531 1334568999999999999999998775 4799999997752
Q ss_pred ----cccccccHHH---HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------c
Q 001395 847 ----SKWVGESEKA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 910 (1086)
Q Consensus 847 ----~~~vGese~~---ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~ 910 (1086)
+...|..... ....|..|.. ++||||||+.+ +..++..|++.|+... .
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 2211211111 1234555544 49999999965 6788999999997532 1
Q ss_pred CCCEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHHHH----HHHHHHh----cCCCC-CcccHHHHHH
Q 001395 911 RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLR----KIPCS-SDVNIRELAC 974 (1086)
Q Consensus 911 ~~~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR~~----Il~~~l~----~~~l~-~d~~l~~La~ 974 (1086)
..++.||+|||+.-. .+.+.|+|.. .+.+..|...+|.+ +++++++ ++... ...+-+.+..
T Consensus 270 ~~~~rii~at~~~l~---~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 270 EVNVRILAATNRNIK---ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp ECCCEEEEEESSCHH---HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eccEEEEEeCCCCHH---HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 247899999997643 4555667654 34455677776643 4444443 33332 2233333333
Q ss_pred Hc-CCCc--HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001395 975 LS-EGCT--GADISLICREAAISAIEENLDASRITMQHLKTAI 1014 (1086)
Q Consensus 975 ~t-~g~s--gadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al 1014 (1086)
.. ..|+ .++|++++++|+..+ +...|+.+|+...+
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~~-----~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLFS-----EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHC-----CSSEECHHHHHHHC
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhC-----CCCcCcHHHCcHhh
Confidence 22 3455 489999999988765 34578888886543
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.13 E-value=3.8e-10 Score=130.31 Aligned_cols=206 Identities=15% Similarity=0.144 Sum_probs=132.6
Q ss_pred cccCCcHHHHHHHHHHH-HhhhhhhHhhhcCC-CCCCeEEE--EcCCCChHHHHHHHHHHHc---------CCcEEEEcc
Q 001395 411 SKLGGLSKEYAILKDII-ISSSVKSTLSSLGL-RPTKGVLL--HGPPGTGKTSLARLCAHDS---------GVNLFTVNG 477 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i-~~~~~~~~~~~lgi-~~~~~vLL--~GPpGTGKTtLAralA~~l---------g~~~i~I~~ 477 (1086)
+.++|.+.+++.|.+.+ ... . -+. ..+..++| +||||+|||++++.+++.+ +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~-~------~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRL-L------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHH-H------TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHH-h------cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 57899999999999987 543 1 011 23567999 9999999999999999876 456788886
Q ss_pred cccccc---------c-------chhh-HHHHHHHHHHhh-cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 478 PEVVSQ---------N-------YGES-EQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 478 s~l~s~---------~-------~Ges-e~~l~~vf~~a~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
...... . .+.. ......+.+... ...|.||+|||+|.+...+.. ....+..|+..++
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHHHHHH
Confidence 432111 0 0111 112222222222 245789999999998532110 1344555555555
Q ss_pred cccc-C--CCeeEEeccCCCC---CCC---ccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCc-
Q 001395 540 GVCR-T--DGVLVIAATNRPD---SIE---PALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGME- 609 (1086)
Q Consensus 540 ~l~~-~--~~viVIatTN~~d---~id---paL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~- 609 (1086)
.... . .++.+|++++.++ .++ +.+.+ +|...+.+ ++++.++..++++..+....
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l--------------~~l~~~e~~~ll~~~~~~~~~ 233 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHL--------------PAYKSRELYTILEQRAELGLR 233 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEEC--------------CCCCHHHHHHHHHHHHHHHBC
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeee--------------CCCCHHHHHHHHHHHHHhcCC
Confidence 4421 2 5788888887665 233 44545 45444666 99999999999987665321
Q ss_pred -cccchHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHH
Q 001395 610 -HSLLDSEVEYLSMATH------GFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 610 -~~l~d~~l~~La~~t~------GfsgaDL~~L~~eA~~~a~r 645 (1086)
..+++..++.++..+. | .++.+..+++.|...+..
T Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 234 DTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp TTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 2356778888998888 6 566777888777655543
No 163
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.10 E-value=8.9e-09 Score=142.56 Aligned_cols=123 Identities=19% Similarity=0.304 Sum_probs=85.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCc
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE 524 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~ 524 (1086)
.+..+.||+|||||.+++.+|+.+|..++.++|++-+.- ..+..+|..+... .++..+||++.+-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~-------- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLE-------- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC--------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCC--------
Confidence 456799999999999999999999999999999875432 3466677765443 2599999998872
Q ss_pred hhHHHHHHHHHHHhh-----------------c--cccCCCeeEEeccCC----CCCCCccccCCCCcceeeehhhhhhh
Q 001395 525 ELSQRMVATLLNLMD-----------------G--VCRTDGVLVIAATNR----PDSIEPALRRPGRLDREIEIDMSFLF 581 (1086)
Q Consensus 525 ~~~~rv~~~Ll~lLd-----------------~--l~~~~~viVIatTN~----~d~idpaL~r~GRfdr~I~i~l~~~~ 581 (1086)
.+++..+...+. + +.-..++.|++|.|+ ...++++++. || |.+.+
T Consensus 670 ---~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m------ 737 (3245)
T 3vkg_A 670 ---ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAM------ 737 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEEC------
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEE------
Confidence 222222222221 1 112245778888884 3467788887 67 45666
Q ss_pred hhcccCCCCCCCHHHHHHHHH
Q 001395 582 SLLKNSPAAVPSPAQRLEILH 602 (1086)
Q Consensus 582 ~~~~~v~~~~Pd~~eR~~IL~ 602 (1086)
..||.+...+|+-
T Consensus 738 --------~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 738 --------IKPDREMIAQVML 750 (3245)
T ss_dssp --------CSCCHHHHHHHHH
T ss_pred --------eCCCHHHHHHHHH
Confidence 8999888777753
No 164
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.09 E-value=9.8e-11 Score=106.62 Aligned_cols=78 Identities=31% Similarity=0.541 Sum_probs=72.3
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 001395 941 YVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 941 ~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
+-.+|+.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++. ...|+++||..|+.+++|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHccC
Confidence 34689999999999999999999889999999999999999999999999999999986 5679999999999998764
No 165
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.08 E-value=2.2e-10 Score=102.21 Aligned_cols=75 Identities=33% Similarity=0.610 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 001395 943 GPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 943 ~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p 1019 (1086)
|+|+.++|.+||+.+++++++..++++..||..|+||||+||.++|++|++.|+++. ...|+++||..|+.++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Confidence 689999999999999999999889999999999999999999999999999999986 567999999999988643
No 166
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=3.7e-10 Score=126.61 Aligned_cols=142 Identities=14% Similarity=0.244 Sum_probs=103.9
Q ss_pred CcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEcccccccccchhh
Q 001395 415 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEVVSQNYGES 488 (1086)
Q Consensus 415 Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l------g~~~i~I~~s~l~s~~~Ges 488 (1086)
|++++++.|+..+... + ...+|||||||+|||++|+++|+.+ ...++.+++.+ ... .
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~--~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENI--G 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCB--C
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCC--C
Confidence 5566777777776544 1 4579999999999999999999864 34677777642 111 2
Q ss_pred HHHHHHHHHHhhcC----CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCcccc
Q 001395 489 EQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 564 (1086)
Q Consensus 489 e~~l~~vf~~a~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~ 564 (1086)
-..++.+++.+... ...|+||||+|.+. ....+.|+..|+.. .+++++|.+|+.++.+.++++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHH
Confidence 23466677766432 34699999999983 34567888988863 467888888999999999999
Q ss_pred CCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHH
Q 001395 565 RPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALL 605 (1086)
Q Consensus 565 r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l 605 (1086)
+ | .+.+ ++|+.++..++++..+
T Consensus 131 S--R---~~~f--------------~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 S--R---VFRV--------------VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--T---SEEE--------------ECCCCHHHHHHHHHHH
T ss_pred c--e---eEeC--------------CCCCHHHHHHHHHHHh
Confidence 9 6 6677 8899999998888776
No 167
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.05 E-value=3.6e-10 Score=103.34 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 001395 946 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 1020 (1086)
Q Consensus 946 ~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~ 1020 (1086)
+.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++. ...|+.+||..|++++.+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~--~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--CSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHhcC
Confidence 568899999999999999999999999999999999999999999999999996 4579999999999999876
No 168
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.00 E-value=3.4e-10 Score=130.23 Aligned_cols=190 Identities=19% Similarity=0.267 Sum_probs=117.4
Q ss_pred ccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCC--cEEEEeCCccc-------
Q 001395 776 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELF------- 846 (1086)
Q Consensus 776 di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~--~fi~v~~sel~------- 846 (1086)
+++|.+....++.+.+... ......++++|++||||+++|+++....+. .|+.++|..+-
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 4667777776666665431 123445999999999999999999887643 39999998642
Q ss_pred --cccccccHHH---HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc---------cCC
Q 001395 847 --SKWVGESEKA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 912 (1086)
Q Consensus 847 --~~~vGese~~---ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~---------~~~ 912 (1086)
+...|..... ....|+.|.. .+||||||+.+ +..++..|+..|+... ...
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 2222221111 1234555543 49999999965 6789999999997432 123
Q ss_pred CEEEEEecCCCCCCChhhhCCCCcce-------EeecCCCCHHHH----HHHHHHHHhc----CCCC-CcccHHHHHHHc
Q 001395 913 NVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDR----EEIFRIHLRK----IPCS-SDVNIRELACLS 976 (1086)
Q Consensus 913 ~v~VI~aTN~p~~lD~aLlrpgRFd~-------~I~~~~P~~~eR----~~Il~~~l~~----~~l~-~d~~l~~La~~t 976 (1086)
++.+|+|||+.-. .+...|+|.. ++.+..|...+| ..++++++++ .... ..+.-+.+....
T Consensus 263 ~~rii~at~~~l~---~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 339 (368)
T 3dzd_A 263 DIRVISATNKNLE---EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLM 339 (368)
T ss_dssp CCEEEEEESSCHH---HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred eeEEEEecCCCHH---HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 6889999996532 4445566654 444555666555 3455555533 2222 223333333222
Q ss_pred -CCCc--HHHHHHHHHHHHHHH
Q 001395 977 -EGCT--GADISLICREAAISA 995 (1086)
Q Consensus 977 -~g~s--gadl~~l~~~A~~~A 995 (1086)
..|. .++++++++.|+..+
T Consensus 340 ~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 340 KQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp TCCCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 2334 589999999887654
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=8.6e-10 Score=134.95 Aligned_cols=120 Identities=23% Similarity=0.318 Sum_probs=77.4
Q ss_pred CCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-------------------cCCCeeEEeccCCC--CCCCc
Q 001395 503 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-------------------RTDGVLVIAATNRP--DSIEP 561 (1086)
Q Consensus 503 ~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-------------------~~~~viVIatTN~~--d~idp 561 (1086)
.+.+|||||++.+ ...+...|+..|+.-. ...++.||++||+. +.+++
T Consensus 201 ~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 3459999999987 2456677888776321 11357899999986 67899
Q ss_pred cccCCCCcc---eeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccC-----ccccchHHHHHHHHHc---CCC---
Q 001395 562 ALRRPGRLD---REIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGM-----EHSLLDSEVEYLSMAT---HGF--- 627 (1086)
Q Consensus 562 aL~r~GRfd---r~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~-----~~~l~d~~l~~La~~t---~Gf--- 627 (1086)
+|++ ||. ..+.++. ...-..+....+++.+.+.. ...+++..++.+.+.. .|-
T Consensus 270 ~l~~--R~~v~~i~i~l~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~ 336 (604)
T 3k1j_A 270 ALRS--RIRGYGYEVYMRT-----------TMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGH 336 (604)
T ss_dssp HHHH--HHHHHSEEEECCS-----------EEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTE
T ss_pred HHHH--HhhccceEeeccc-----------cccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccc
Confidence 9998 885 2344310 01123445555655444322 2356778888877653 452
Q ss_pred ---cHHHHHHHHHHHHHHHHHH
Q 001395 628 ---VGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 628 ---sgaDL~~L~~eA~~~a~rr 646 (1086)
+.+++.++++.|...|..+
T Consensus 337 l~~~~R~l~~llr~A~~~A~~~ 358 (604)
T 3k1j_A 337 LTLRLRDLGGIVRAAGDIAVKK 358 (604)
T ss_dssp EECCHHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHHHhc
Confidence 6899999999987766544
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.97 E-value=4.8e-10 Score=115.17 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=77.7
Q ss_pred CCccccccccc----hhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEe
Q 001395 770 PKVKWEDVGGQ----REVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVK 841 (1086)
Q Consensus 770 p~v~~~di~G~----e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~ 841 (1086)
.+.+|+++++. ..+.+.+++++. .+....+.+++|+||||||||++++++++.+ |..++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34578887753 333333333332 2334456779999999999999999999875 66777777
Q ss_pred CCccccccccccHHH-HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEec
Q 001395 842 GPELFSKWVGESEKA-VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 920 (1086)
Q Consensus 842 ~sel~~~~vGese~~-ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aT 920 (1086)
..++...+....... ...+++. ...|.+|+|||++.. .........+...++.... .+..+|++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~-----------~~~~~~~~~l~~ll~~~~~-~~~~ii~ts 140 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE-----------RLSDWQRELISYIITYRYN-NLKSTIITT 140 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS-----------CCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC-----------cCCHHHHHHHHHHHHHHHH-cCCCEEEEc
Confidence 766654322111000 0112222 235779999999843 1233344444444543322 356788888
Q ss_pred CCCCC
Q 001395 921 NRPDK 925 (1086)
Q Consensus 921 N~p~~ 925 (1086)
|.+..
T Consensus 141 n~~~~ 145 (180)
T 3ec2_A 141 NYSLQ 145 (180)
T ss_dssp CCCSC
T ss_pred CCChh
Confidence 87744
No 171
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.94 E-value=8.9e-10 Score=99.43 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCch
Q 001395 946 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEI 1022 (1086)
Q Consensus 946 ~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~p~~~ 1022 (1086)
+.++|.+||+.+++++++..+++++.||..|+||||+||.++|++|++.|+++. ...|+++||..|+.+++|+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN--RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--CSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHccCch
Confidence 678999999999999999889999999999999999999999999999999876 467999999999999999743
No 172
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.80 E-value=4.1e-09 Score=108.17 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcccccccccchhhHH-HHHHHHHHhhcCCCeEEEEccc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDEL 512 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~s~l~s~~~Gese~-~l~~vf~~a~~~~P~ILfIDEi 512 (1086)
++.+..+.+++|+||||||||||++++++.+ |..++.++..++.......... ....+++.. ..|.+|+|||+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~ 109 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDL 109 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCC
Confidence 3455668899999999999999999999876 5566667766665432211100 000112221 25779999999
Q ss_pred hhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 513 DAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 513 D~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
+... .+ ......|..+++..... +..+|++||.+.
T Consensus 110 ~~~~------~~---~~~~~~l~~ll~~~~~~-~~~ii~tsn~~~ 144 (180)
T 3ec2_A 110 GSER------LS---DWQRELISYIITYRYNN-LKSTIITTNYSL 144 (180)
T ss_dssp SSSC------CC---HHHHHHHHHHHHHHHHT-TCEEEEECCCCS
T ss_pred CCCc------CC---HHHHHHHHHHHHHHHHc-CCCEEEEcCCCh
Confidence 7541 12 22334455555544323 456667777643
No 173
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.76 E-value=1.3e-08 Score=117.73 Aligned_cols=197 Identities=21% Similarity=0.231 Sum_probs=124.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEccccccccc---
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQN--- 484 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg---~~~i~I~~s~l~s~~--- 484 (1086)
..+.|.....+.+.+.+... .....+++|+|++|||||++|+++....+ .+|+.+||..+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 45777777666666665443 12356699999999999999999998764 589999998764321
Q ss_pred ----------chhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--c-------CC
Q 001395 485 ----------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TD 545 (1086)
Q Consensus 485 ----------~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~-------~~ 545 (1086)
.|.... ....|+.|..+ +||||||+.+ ...++..|+..|+.-. . .-
T Consensus 207 elfg~~~g~~tga~~~-~~g~~~~a~~g---tlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSS-KEGFFELADGG---TLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHCBCTTSSTTCCSC-BCCHHHHTTTS---EEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HhcCCCCCCCCCcccc-cCCceeeCCCc---EEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 111111 12345555544 9999999988 3567778888887521 1 13
Q ss_pred CeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHH----HHHHHHHHcc----Cc---cccch
Q 001395 546 GVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQR----LEILHALLSG----ME---HSLLD 614 (1086)
Q Consensus 546 ~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR----~~IL~~~l~~----~~---~~l~d 614 (1086)
++.+|++||..- . .+...|+|...++. .+..+.+..|...+| ..+++.++.. .+ ..+++
T Consensus 272 ~~rii~at~~~l--~-~~~~~g~fr~dl~~-------rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 341 (387)
T 1ny5_A 272 NVRILAATNRNI--K-ELVKEGKFREDLYY-------RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTK 341 (387)
T ss_dssp CCEEEEEESSCH--H-HHHHTTSSCHHHHH-------HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECH
T ss_pred cEEEEEeCCCCH--H-HHHHcCCccHHHHH-------hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 578999998631 1 23334677544332 234444456665554 3344444332 22 23567
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001395 615 SEVEYLSMATHGFVGADLAALCNEAALV 642 (1086)
Q Consensus 615 ~~l~~La~~t~GfsgaDL~~L~~eA~~~ 642 (1086)
..++.+..+..-.+.++|+++++.|+..
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 7788887766555678999998887654
No 174
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=5.8e-09 Score=104.63 Aligned_cols=105 Identities=14% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCC
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 519 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r 519 (1086)
++..++|+||+|+|||+|++++++.+ |..++.+++.++... +....|.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh--
Confidence 57789999999999999999999987 667888888777544 1123578999999987531
Q ss_pred CCCCchhHHHHHHHHHHHhhccccCCCeeEEeccC-CCCCCC--ccccCCCCcceeeeh
Q 001395 520 KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDSIE--PALRRPGRLDREIEI 575 (1086)
Q Consensus 520 ~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN-~~d~id--paL~r~GRfdr~I~i 575 (1086)
. . ...|+.+++.....+..++|.++| .+..+. +.+++ |+..-..+
T Consensus 98 ----~--~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 98 ----E--E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ----H--H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ----H--H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1 1 345666666554444442444555 455443 66666 66544433
No 175
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.8e-08 Score=122.87 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||++||+.+ +.+......++..|..+....+..||++||+.+.
T Consensus 475 Rv~iAraL~~~p~lLlLDEPT~------------gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~ 530 (608)
T 3j16_B 475 RVAIVLALGIPADIYLIDEPSA------------YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM 530 (608)
T ss_dssp HHHHHHHTTSCCSEEEECCTTT------------TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCC------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 6677888889999999999874 3444555555555554433346789999997654
No 176
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.72 E-value=3.8e-07 Score=102.37 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=114.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccc---------
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV--------- 481 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~--------- 481 (1086)
..++|.+.+++.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 12 ~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHH
Confidence 4688999999998887642 1 5799999999999999999999876 6666654321
Q ss_pred ---c---ccch-------------------------hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHH
Q 001395 482 ---S---QNYG-------------------------ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM 530 (1086)
Q Consensus 482 ---s---~~~G-------------------------ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv 530 (1086)
. ...+ .....+..+.+.+....|.+|+|||++.+..... .....+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~~~~~ 151 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RGGKEL 151 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TTTHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cchhhH
Confidence 0 0000 0111122222222222489999999998853100 012234
Q ss_pred HHHHHHHhhccccCCCeeEEeccCCCC---------CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHH
Q 001395 531 VATLLNLMDGVCRTDGVLVIAATNRPD---------SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEIL 601 (1086)
Q Consensus 531 ~~~Ll~lLd~l~~~~~viVIatTN~~d---------~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL 601 (1086)
...|..+++.. .++.+|.++.... .....+. ||+...+.+ ++.+.++..+++
T Consensus 152 ~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l--------------~pl~~~e~~~~l 212 (350)
T 2qen_A 152 LALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLV--------------KPFDKDTSVEFL 212 (350)
T ss_dssp HHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEEC--------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeC--------------CCCCHHHHHHHH
Confidence 44444444432 3566666654321 1111222 355556777 899999999999
Q ss_pred HHHHccCccccchHHHHHHHHHcCCCcHHHHHHHH
Q 001395 602 HALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 636 (1086)
Q Consensus 602 ~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~ 636 (1086)
...+...+...++..+..+...+.|+. .-+..++
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~ 246 (350)
T 2qen_A 213 KRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFG 246 (350)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHH
Confidence 887766555567778888999998864 3344443
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=2.3e-08 Score=100.23 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhc
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 884 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r 884 (1086)
....++|+||+|+|||+|++++++.. |...+.+++.++... +....|.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh--
Confidence 34569999999999999999999876 777889998887543 1123578999999986521
Q ss_pred CCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCC-CCCCC--hhhhCCCCcceE
Q 001395 885 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-PDKID--PALLRPGRFDRL 939 (1086)
Q Consensus 885 ~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~-p~~lD--~aLlrpgRFd~~ 939 (1086)
.. +..|...++........++|++||. |..+. +.+.+ ||..-
T Consensus 98 ----------~~-~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g 142 (149)
T 2kjq_A 98 ----------EE-QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYC 142 (149)
T ss_dssp ----------HH-HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGS
T ss_pred ----------HH-HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcC
Confidence 11 4445555544433323335556664 44332 77777 77543
No 178
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.69 E-value=5e-09 Score=94.36 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 001395 948 TDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 1018 (1086)
Q Consensus 948 ~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~~ 1018 (1086)
++|.+||+.+++++++..++|++.||..|+||||+||.++|++|++.|+++. ...|+.+||..|+.++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHH
Confidence 4689999999999998889999999999999999999999999999999986 46799999999999985
No 179
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.68 E-value=8.9e-09 Score=115.19 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=78.0
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHhCC--cEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhh
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 883 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~~~--~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~ 883 (1086)
+.+.+.++|+||||||||+||.++|...+. .|+.+...+.++.+....+..++.+++...... +|||||++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 344455899999999999999999987544 466664355444444445555666666665544 9999999998654
Q ss_pred cCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhh
Q 001395 884 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPAL 930 (1086)
Q Consensus 884 r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aL 930 (1086)
....+. .+...+.+.+++..|.+.....++.+|++|| +...|+++
T Consensus 198 ~~~~s~-~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNTT-SGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccc-cchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 322111 1122456777888887766666888999998 55556554
No 180
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.67 E-value=3.8e-07 Score=109.74 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=71.9
Q ss_pred c-CCCCCCeEEEEcCCCChHHHHHHH--HHHHc--CCcEEEEccccccc------ccch---------------------
Q 001395 439 L-GLRPTKGVLLHGPPGTGKTSLARL--CAHDS--GVNLFTVNGPEVVS------QNYG--------------------- 486 (1086)
Q Consensus 439 l-gi~~~~~vLL~GPpGTGKTtLAra--lA~~l--g~~~i~I~~s~l~s------~~~G--------------------- 486 (1086)
+ +++++..++|.||+|+|||||++. ++... +...+.+++.+... ..+|
T Consensus 33 ~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~ 112 (525)
T 1tf7_A 33 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDP 112 (525)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCS
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCccc
Confidence 5 678899999999999999999999 44443 33455555433110 0000
Q ss_pred ---------hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 487 ---------ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 487 ---------ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
..+..+..+........|.+|+|||+-.+.+. ...+......++.++..+.. .++.+|.++++.+
T Consensus 113 ~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~ 186 (525)
T 1tf7_A 113 EGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ-IGATTVMTTERIE 186 (525)
T ss_dssp SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSS
T ss_pred chhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCC
Confidence 01222333444455567889999998776532 12234455566666666644 3677888888877
Q ss_pred CCC
Q 001395 558 SIE 560 (1086)
Q Consensus 558 ~id 560 (1086)
.++
T Consensus 187 ~~~ 189 (525)
T 1tf7_A 187 EYG 189 (525)
T ss_dssp SSS
T ss_pred Ccc
Confidence 764
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.67 E-value=8.2e-09 Score=107.73 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=48.0
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccccccccc-HHHHHHHHHHHHhcCCeEEEEecCchh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGL 880 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~~~vGes-e~~ir~lf~~A~~~~p~ILflDEid~L 880 (1086)
+.+++|+||||||||++|++++..+ +.+++.++++++...+.... ......++..... +.+|||||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 3789999999999999999999876 67888888877654322111 0112233333332 359999999754
No 182
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.67 E-value=8.2e-08 Score=111.96 Aligned_cols=210 Identities=17% Similarity=0.139 Sum_probs=122.3
Q ss_pred cccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHH-HHHhCCcEEEEeC--C---ccccccc
Q 001395 777 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV-ASEAGLNFLAVKG--P---ELFSKWV 850 (1086)
Q Consensus 777 i~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkal-A~~~~~~fi~v~~--s---el~~~~v 850 (1086)
|.|++.+|..|.-.+...... .+..-++||.|+||| ||++|+++ ++.+....+ ..+ + .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEE
Confidence 889999988776665431100 122337999999999 99999999 766533222 221 1 1111100
Q ss_pred cc--cHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccc-------cCCCEEEEEecC
Q 001395 851 GE--SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------QRVNVTVIAATN 921 (1086)
Q Consensus 851 Ge--se~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~-------~~~~v~VI~aTN 921 (1086)
+. .. .-...+..|. ..|+|+|||+. .....+..|+..|+... -..++.||+|+|
T Consensus 285 ~~tG~~-~~~G~l~LAd---gGvl~lDEIn~-------------~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 285 EDRGWA-LRAGAAVLAD---GGILAVDHLEG-------------APEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp ESSSEE-EEECHHHHTT---TSEEEEECCTT-------------CCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred cCCCcc-cCCCeeEEcC---CCeeehHhhhh-------------CCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 00 00 0011122332 34999999994 47788999999997431 234689999999
Q ss_pred CCC-----------CCChhhhCCCCcceEee-cCCCCHHHH---------HHHHH---HHHh--c-CCCCCcccHHHHHH
Q 001395 922 RPD-----------KIDPALLRPGRFDRLLY-VGPPNETDR---------EEIFR---IHLR--K-IPCSSDVNIRELAC 974 (1086)
Q Consensus 922 ~p~-----------~lD~aLlrpgRFd~~I~-~~~P~~~eR---------~~Il~---~~l~--~-~~l~~d~~l~~La~ 974 (1086)
..+ .|.++++. |||.++. ...|+.+.- .+.++ .+.+ . .+...+...+.+..
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHH
Confidence 865 78899999 9986443 445543321 11122 1223 1 11112211111110
Q ss_pred -----------------HcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 975 -----------------LSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 975 -----------------~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
..-|.|.|.+..+++-|...|..+. ...|+.+|+..|+.-+
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g--R~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL--SDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC--cCCCCHHHHHHHHHHH
Confidence 1336788999999998888887765 5679999999887653
No 183
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.64 E-value=1.2e-08 Score=114.23 Aligned_cols=122 Identities=22% Similarity=0.210 Sum_probs=74.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIA 516 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~ 516 (1086)
.|+.++..++|+||||||||+||..+|...|. .|+.+...+.++.+..+.+..+..+++.+.... +||||+++.+.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~ 195 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVI 195 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccc
Confidence 35667777899999999999999999976544 455552233333333455666666766665554 99999999986
Q ss_pred cCCCCC-CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccc
Q 001395 517 PARKDG-GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 563 (1086)
Q Consensus 517 ~~r~~~-~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL 563 (1086)
...... ......+.+.+++..|..+....++++|+++| +...++++
T Consensus 196 ~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 196 GAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 543221 10001233445555555554455778888888 44445443
No 184
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.58 E-value=2.5e-08 Score=114.81 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=91.6
Q ss_pred cchhHHHHHHHHHhcchh--------cHHHHHhh--CCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccc
Q 001395 779 GQREVKTQLMEAVEWPQK--------HQEAFKRI--GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 848 (1086)
Q Consensus 779 G~e~vk~~L~e~i~~~l~--------~~~~~~~l--g~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~ 848 (1086)
|..++++.+ +.++|+.. ....++.+ +++.+..++|+||||+||||+++++++..+..++.+..++- .
T Consensus 130 g~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~ 206 (377)
T 1svm_A 130 GSADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R 206 (377)
T ss_dssp CCCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T
T ss_pred ChHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h
Confidence 334556555 66676552 23444444 66777779999999999999999999998877665443321 0
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhh-hcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAA-IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~-~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
. -|.........++|+||++.+.. .|+.... . .......+...+++ .+.|+++||+++.+
T Consensus 207 --------~--~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~--~-~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l- 267 (377)
T 1svm_A 207 --------L--NFELGVAIDQFLVVFEDVKGTGGESRDLPSG--Q-GINNLDNLRDYLDG-----SVKVNLEKKHLNKR- 267 (377)
T ss_dssp --------H--HHHHGGGTTCSCEEETTCCCSTTTTTTCCCC--S-HHHHHHTTHHHHHC-----SSCEEECCSSSCCE-
T ss_pred --------H--HHHHHHhcchhHHHHHHHHHHHHHHhhcccc--C-cchHHHHHHHHhcC-----CCeEeeccCchhhH-
Confidence 0 01111223345889999998765 2221110 0 00012344555554 45688899999999
Q ss_pred hhhhCCCCcceEeecCC
Q 001395 928 PALLRPGRFDRLLYVGP 944 (1086)
Q Consensus 928 ~aLlrpgRFd~~I~~~~ 944 (1086)
+++++|||++..++...
T Consensus 268 ~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 268 TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp EECCCCEEEEECSCCCC
T ss_pred HHhhcCcccChhHHhhc
Confidence 89999999998777644
No 185
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.56 E-value=6.6e-08 Score=87.89 Aligned_cols=56 Identities=25% Similarity=0.419 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 590 AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 590 ~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
.+||.++|.+||+.+++++++. .+.+++.||+.|.||+|+||.++|++|++.|+++
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~ 64 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999988765 6778999999999999999999999999999875
No 186
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.56 E-value=2.9e-07 Score=105.87 Aligned_cols=196 Identities=23% Similarity=0.300 Sum_probs=121.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEcccccccccc---
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQNY--- 485 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~--~i~I~~s~l~s~~~--- 485 (1086)
..+.|.......+.+.+... . .....++++|++||||+++|+++....+.. |+.+||..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-a---------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-A---------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-H---------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh-h---------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 35677777777776665443 1 234569999999999999999999876543 99999987643311
Q ss_pred ----------hhhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc--cC-------CC
Q 001395 486 ----------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RT-------DG 546 (1086)
Q Consensus 486 ----------Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~--~~-------~~ 546 (1086)
|.... -...|+.|..+ .||||||+.+ ....+..|+..|+.-. .- -+
T Consensus 199 lfg~~~g~~tga~~~-~~g~~~~a~~g---tlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTR-KKGKLELADQG---TLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCC-EECHHHHTTTS---EEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccc-cCChHhhcCCC---eEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 10000 12345556544 8999999988 4567788888887521 11 24
Q ss_pred eeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHH----HHHHHHHHHcc----Cc---cccchH
Q 001395 547 VLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQ----RLEILHALLSG----ME---HSLLDS 615 (1086)
Q Consensus 547 viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~e----R~~IL~~~l~~----~~---~~l~d~ 615 (1086)
+.+|++||.. +. .....|+|...++ +.+..+.+..|...+ ...+++.++.. .+ ..+++.
T Consensus 264 ~rii~at~~~--l~-~~v~~g~fr~dL~-------~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 333 (368)
T 3dzd_A 264 IRVISATNKN--LE-EEIKKGNFREDLY-------YRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE 333 (368)
T ss_dssp CEEEEEESSC--HH-HHHHTTSSCHHHH-------HHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH
T ss_pred eEEEEecCCC--HH-HHHHcCCccHHHH-------HHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 6789999852 22 2333467754332 233444434555444 44444554432 22 236778
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001395 616 EVEYLSMATHGFVGADLAALCNEAAL 641 (1086)
Q Consensus 616 ~l~~La~~t~GfsgaDL~~L~~eA~~ 641 (1086)
.++.|..+...-+.+++.++++.|..
T Consensus 334 a~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 334 TKEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 88888776655567888888877753
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.55 E-value=5.4e-07 Score=101.22 Aligned_cols=181 Identities=18% Similarity=0.213 Sum_probs=108.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccc-----c--c
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV-----S--Q 483 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~-----s--~ 483 (1086)
..++|-+.+++.|.+ +.. ..++|+||+|+|||+|++.+++.++..++.+++.... + .
T Consensus 13 ~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHH
Confidence 568899988888777 421 3799999999999999999999887777788765420 0 0
Q ss_pred cchh---------------------------------------hHHHHHHHHHHhhcC--CCeEEEEccchhhccCCCCC
Q 001395 484 NYGE---------------------------------------SEQALHEVFDSASQS--APAVVFIDELDAIAPARKDG 522 (1086)
Q Consensus 484 ~~Ge---------------------------------------se~~l~~vf~~a~~~--~P~ILfIDEiD~l~~~r~~~ 522 (1086)
.... ....+..+++..... .|.+|+|||++.+....
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~--- 153 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR--- 153 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT---
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC---
Confidence 0000 001233344433222 38899999999985311
Q ss_pred CchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC---------CccccCCCCcceeeehhhhhhhhhcccCCCCCCC
Q 001395 523 GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---------EPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPS 593 (1086)
Q Consensus 523 ~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i---------dpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd 593 (1086)
..+ +...|..+++.. .++.+|++++....+ ...+ .||+...+.+ ++.+
T Consensus 154 ~~~----~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l--------------~~l~ 210 (357)
T 2fna_A 154 GVN----LLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVEL--------------KPFS 210 (357)
T ss_dssp TCC----CHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEE--------------CCCC
T ss_pred chh----HHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeec--------------CCCC
Confidence 111 122232333321 356666666543211 1112 2365567777 8999
Q ss_pred HHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHH
Q 001395 594 PAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 636 (1086)
Q Consensus 594 ~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~ 636 (1086)
.++..+++...+...+....+. ..+...+.|+. .-+..++
T Consensus 211 ~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t~G~P-~~l~~~~ 250 (357)
T 2fna_A 211 REEAIEFLRRGFQEADIDFKDY--EVVYEKIGGIP-GWLTYFG 250 (357)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCH--HHHHHHHCSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcH--HHHHHHhCCCH-HHHHHHH
Confidence 9999999988765433333332 77888888864 3444443
No 188
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.55 E-value=2.4e-06 Score=95.79 Aligned_cols=190 Identities=20% Similarity=0.265 Sum_probs=114.8
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc----
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF---- 846 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~---- 846 (1086)
...-+.++|.+...+.|.+.+.. + ..++++||+|+|||++++.+++..+ ++.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34456788999888888877652 1 4699999999999999999998875 6666653221
Q ss_pred --------c---ccccc---------------------cHHHHHHHHH----HHHhcCCeEEEEecCchhhhhcCCCCCC
Q 001395 847 --------S---KWVGE---------------------SEKAVRSLFA----KARANAPSIIFFDEIDGLAAIRGKESDG 890 (1086)
Q Consensus 847 --------~---~~vGe---------------------se~~ir~lf~----~A~~~~p~ILflDEid~L~~~r~~~~~~ 890 (1086)
. ..++. ....+..+++ .+....|.+|+|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----
Confidence 0 00000 0011222222 22222489999999998743100
Q ss_pred CCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC---------ChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcC
Q 001395 891 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI---------DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI 961 (1086)
Q Consensus 891 ~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l---------D~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~ 961 (1086)
.....+...|-..++.. .++.+|+++.....+ ...+. ||+...+.+++.+.++..++++..+...
T Consensus 146 -~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 146 -RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp -TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred -cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 01233444343333332 366677665432111 11122 4666789999999999999998877654
Q ss_pred CCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 001395 962 PCS-SDVNIRELACLSEGCTGADISLICR 989 (1086)
Q Consensus 962 ~l~-~d~~l~~La~~t~g~sgadl~~l~~ 989 (1086)
+.. .+..+..+...+.|+.. -+..++.
T Consensus 220 ~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 220 NLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp TCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 433 33457788889998764 4555554
No 189
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.54 E-value=6.2e-07 Score=100.74 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=114.6
Q ss_pred CccccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc----
Q 001395 771 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF---- 846 (1086)
Q Consensus 771 ~v~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~---- 846 (1086)
....+.++|.+...+.|.+ +.. ..++|+||+|+|||++++.++++.+..++.+++....
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 3455678888887777776 431 3699999999999999999999887777888765420
Q ss_pred -c---------------------------cccc--------c------cHHHHHHHHHHHHhc--CCeEEEEecCchhhh
Q 001395 847 -S---------------------------KWVG--------E------SEKAVRSLFAKARAN--APSIIFFDEIDGLAA 882 (1086)
Q Consensus 847 -~---------------------------~~vG--------e------se~~ir~lf~~A~~~--~p~ILflDEid~L~~ 882 (1086)
+ ...| . ....+..++...... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 0000 0 011234444444332 388999999998743
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC---------hhhhCCCCcceEeecCCCCHHHHHHH
Q 001395 883 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID---------PALLRPGRFDRLLYVGPPNETDREEI 953 (1086)
Q Consensus 883 ~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD---------~aLlrpgRFd~~I~~~~P~~~eR~~I 953 (1086)
.. +.. ....+..+. +. ..++.+|++++....+. ..+ .||+...+.+++.+.++..++
T Consensus 152 ~~-----~~~-~~~~l~~~~---~~---~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 152 LR-----GVN-LLPALAYAY---DN---LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CT-----TCC-CHHHHHHHH---HH---CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHH
T ss_pred cC-----chh-HHHHHHHHH---Hc---CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHH
Confidence 10 001 122233332 21 12567777765432111 112 246667899999999999999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 001395 954 FRIHLRKIPCSSDVNIRELACLSEGCTGADISLICRE 990 (1086)
Q Consensus 954 l~~~l~~~~l~~d~~l~~La~~t~g~sgadl~~l~~~ 990 (1086)
++..+...+...+ +...+...+.|+.. -+..++..
T Consensus 218 l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 9887754333322 23788899999765 45555443
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=3.8e-08 Score=102.62 Aligned_cols=70 Identities=31% Similarity=0.430 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccccchhhH-HHHHHHHHHhhcCCCeEEEEccchhh
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESE-QALHEVFDSASQSAPAVVFIDELDAI 515 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~~Gese-~~l~~vf~~a~~~~P~ILfIDEiD~l 515 (1086)
+.+++|+||||||||++|+++++.+ +..++.+++.++......... ..+..+++.... +.+|||||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 3789999999999999999999887 667888888776543221100 011222333322 359999999765
No 191
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.48 E-value=4.2e-08 Score=110.12 Aligned_cols=70 Identities=17% Similarity=0.321 Sum_probs=46.8
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCCcccccccccc-HHHHHHHHHHHHhcCCeEEEEecCchh
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGL 880 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~sel~~~~vGes-e~~ir~lf~~A~~~~p~ILflDEid~L 880 (1086)
..+++|+||||||||+||+++|.++ +.+++.+++++++..+.... .......+.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 5789999999999999999998754 47888888887655433211 111222233332 3459999999754
No 192
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.46 E-value=2.9e-07 Score=113.96 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCC---eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCC
Q 001395 858 RSLFAKARANAP---SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPG 934 (1086)
Q Consensus 858 r~lf~~A~~~~p---~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpg 934 (1086)
|..+++|....| .||++||+.+ +.+......++..|..+... +..||++||+++. .+
T Consensus 551 rv~iAraL~~~p~~p~llllDEPt~------------~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~-----~~-- 610 (670)
T 3ux8_A 551 RVKLAAELHRRSNGRTLYILDEPTT------------GLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDV-----IK-- 610 (670)
T ss_dssp HHHHHHHHHSCCCSCEEEEEESTTT------------TCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH-----HT--
T ss_pred HHHHHHHHhhCCCCCcEEEEeCCCC------------CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-----HH--
Confidence 556666665554 6999999884 44555566666666555433 7889999997643 23
Q ss_pred CcceEeec
Q 001395 935 RFDRLLYV 942 (1086)
Q Consensus 935 RFd~~I~~ 942 (1086)
.+|+++.+
T Consensus 611 ~~d~i~~l 618 (670)
T 3ux8_A 611 TADYIIDL 618 (670)
T ss_dssp TCSEEEEE
T ss_pred hCCEEEEe
Confidence 45666655
No 193
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.45 E-value=3e-07 Score=105.79 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=79.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhcc-
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP- 517 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~- 517 (1086)
++++++..++|+||||+||||+++++++.++..++.++..+- .....+..+| +..++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHHH
Confidence 588899999999999999999999999988776665443221 0111233223 335789999998875
Q ss_pred CCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeeh
Q 001395 518 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 518 ~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
.+.-..... ......+.+.+++ .+.|++++|+++.+ +++.+|||++..+..
T Consensus 232 ~r~l~~~~~-~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 232 SRDLPSGQG-INNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp TTTCCCCSH-HHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred HhhccccCc-chHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 222111111 0122344555554 46788899999999 789999999987765
No 194
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.40 E-value=4.4e-07 Score=82.79 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 001395 593 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 646 (1086)
Q Consensus 593 d~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr 646 (1086)
|.++|.+||+.+++++++. .+.+++.||+.|+||+|+||.++|++|++.|+++
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 5689999999999998765 6788999999999999999999999999999876
No 195
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.36 E-value=4.1e-07 Score=95.60 Aligned_cols=122 Identities=20% Similarity=0.349 Sum_probs=76.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH--------cC-CcEEEEcccccccccc----------hhhHH--HHHHHHHHh--hc
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHD--------SG-VNLFTVNGPEVVSQNY----------GESEQ--ALHEVFDSA--SQ 501 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~--------lg-~~~i~I~~s~l~s~~~----------Gese~--~l~~vf~~a--~~ 501 (1086)
...|++|+||||||++|...+.. .| .+++..+..++.-... ...+. .....++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35789999999999999876433 24 5555555554432221 11000 012222321 23
Q ss_pred CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCCCccccCCCCcceeeeh
Q 001395 502 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI 575 (1086)
Q Consensus 502 ~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i 575 (1086)
+..+||+|||++.+.+.+....+. ..++..++. .+..++.+|.+|+.++.++.++++ |++..+.+
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred cCceEEEEEChhhhccCccccchh------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 456799999999998665332221 125555554 234567788889999999999987 99888887
No 196
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.36 E-value=3.7e-07 Score=81.18 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 590 AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 590 ~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
|.|+.++|.+||+.++++++.. .+.+++.|+..|+||+|+||.++|++|++.|+++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~ 59 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV 59 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 5799999999999999988754 6778999999999999999999999999999988543
No 197
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.35 E-value=2.8e-07 Score=96.96 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=80.4
Q ss_pred CcceeCCCCCcchHHHHHHHHH--------hC-CcEEEEeCCccccccc----------cccHH--HHHHHHHHH--Hhc
Q 001395 811 GILMFGPPGCSKTLMARAVASE--------AG-LNFLAVKGPELFSKWV----------GESEK--AVRSLFAKA--RAN 867 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~--------~~-~~fi~v~~sel~~~~v----------Gese~--~ir~lf~~A--~~~ 867 (1086)
-.|++|+||+|||++|..++.. .| .+++..+..++.-.+. ..... ....++..+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 4789999999999999886433 34 6666677666532221 11110 012223321 234
Q ss_pred CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCH
Q 001395 868 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE 947 (1086)
Q Consensus 868 ~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~ 947 (1086)
..+||+|||++.+.+.+.... +.. .++..++.. ...+.-||.+|+.++.|+.++.+ |++..+++..|..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~---e~~-----rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS---KIP-----ENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC---CCC-----HHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred CceEEEEEChhhhccCccccc---hhH-----HHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 467999999999876543211 111 255555532 24466778888889999999887 9999888887654
Q ss_pred H
Q 001395 948 T 948 (1086)
Q Consensus 948 ~ 948 (1086)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 4
No 198
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.34 E-value=1.2e-06 Score=102.37 Aligned_cols=204 Identities=16% Similarity=0.103 Sum_probs=115.3
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHH-HHHcCCcEEEE-ccc---cccccc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLC-AHDSGVNLFTV-NGP---EVVSQN 484 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAral-A~~lg~~~i~I-~~s---~l~s~~ 484 (1086)
+..|.|++.+|..|.=.+.-. ... +...-+|||.|+||| ||++|+++ ++.+....+.. .++ .+....
T Consensus 212 IapI~G~e~vK~aLll~L~GG-~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~ 283 (506)
T 3f8t_A 212 IAPLPGAEEVGKMLALQLFSC-VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVL 283 (506)
T ss_dssp HCCSTTCHHHHHHHHHHHTTC-CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEE
T ss_pred hcccCCCHHHHHHHHHHHcCC-ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEE
Confidence 334889988655554433221 000 122347999999999 99999999 77654433221 111 111110
Q ss_pred chh--hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccc-------cCCCeeEEeccCC
Q 001395 485 YGE--SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-------RTDGVLVIAATNR 555 (1086)
Q Consensus 485 ~Ge--se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~-------~~~~viVIatTN~ 555 (1086)
.+. ..-. ...+..|..+ |+|||||+.+ .......|++.|+.-. -..++.||+|+|+
T Consensus 284 r~~tG~~~~-~G~l~LAdgG---vl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 284 KEDRGWALR-AGAAVLADGG---ILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp EESSSEEEE-ECHHHHTTTS---EEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred EcCCCcccC-CCeeEEcCCC---eeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 000 0000 1112233333 9999999877 4667788888887521 1346899999998
Q ss_pred CC-----------CCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCH-------------HHHHHHHHHHHc--cCc
Q 001395 556 PD-----------SIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSP-------------AQRLEILHALLS--GME 609 (1086)
Q Consensus 556 ~d-----------~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~-------------~eR~~IL~~~l~--~~~ 609 (1086)
.+ .+++++++ |||-.+.+ .+.|+. +...+.+. +.+ ...
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~-------------~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~ 412 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLS--HFDLIAFL-------------GVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPA 412 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHT--TCSEEEET-------------TC--------------CCHHHHHHHHH-HHHHHCSC
T ss_pred ccccCCCCCccccCCChHHhh--heeeEEEe-------------cCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCC
Confidence 75 67788888 99866554 133332 22222222 222 223
Q ss_pred cccchHHHHHHHH-----------------HcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 001395 610 HSLLDSEVEYLSM-----------------ATHGFVGADLAALCNEAALVCLRRYSKIQT 652 (1086)
Q Consensus 610 ~~l~d~~l~~La~-----------------~t~GfsgaDL~~L~~eA~~~a~rr~~~~~~ 652 (1086)
..+++...+.+.. ...|.+++.+..|++-|...|.-+.+....
T Consensus 413 p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 413 PELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred ceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 3344443333221 123678999999999998888777665443
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.29 E-value=2.5e-06 Score=87.96 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=69.7
Q ss_pred cceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc---------------------------------cccccccccHH--H
Q 001395 812 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE---------------------------------LFSKWVGESEK--A 856 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se---------------------------------l~~~~vGese~--~ 856 (1086)
+.|.||||+|||||++.|++..+..+.-....+ ..+++.+.-.. .
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~~ 82 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE 82 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHHH
Confidence 679999999999999999998764433211111 11112222222 2
Q ss_pred HHHHHHHH-----HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC--CChh
Q 001395 857 VRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK--IDPA 929 (1086)
Q Consensus 857 ir~lf~~A-----~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~--lD~a 929 (1086)
.+..+..| ....|.+|++||++-.. ..+......+...|+. .+..+|++||+.+. +-..
T Consensus 83 qr~~la~aa~~~~l~~~p~llilDEigp~~----------~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 83 LAIPILERAYREAKKDRRKVIIIDEIGKME----------LFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECCCSTTG----------GGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHH
T ss_pred HHHHHHhhccccccccCCCEEEEeCCCCcc----------cCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHH
Confidence 34445553 67889999999965321 2345566677777764 24556677753222 2233
Q ss_pred hhCCCCcc-eEeecCCCCHHH
Q 001395 930 LLRPGRFD-RLLYVGPPNETD 949 (1086)
Q Consensus 930 LlrpgRFd-~~I~~~~P~~~e 949 (1086)
+.. |-+ +++.+...+.++
T Consensus 149 i~~--r~~~~i~~~~~~~r~~ 167 (178)
T 1ye8_A 149 IRR--LPGAVLIELTPENRDV 167 (178)
T ss_dssp HHT--CTTCEEEECCTTTTTT
T ss_pred HHh--cCCcEEEEecCcCHHH
Confidence 444 322 466766555433
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.26 E-value=3.1e-07 Score=102.97 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcccccccccchhh-HHHHHHHHHHhhcCCCeEEEEccchhh
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGES-EQALHEVFDSASQSAPAVVFIDELDAI 515 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~s~l~s~~~Ges-e~~l~~vf~~a~~~~P~ILfIDEiD~l 515 (1086)
++.+++|+||||||||+||+++|+.+ |..++.+++++++....+.. ...+..+++... .+.+|||||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 36899999999999999999999865 46788888776654322110 111122222222 3459999999654
No 201
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.23 E-value=8.8e-07 Score=79.65 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 001395 593 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 645 (1086)
Q Consensus 593 d~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~r 645 (1086)
|.++|.+||+.+++++++. .+.+++.++..|+||+|+||.++|++|++.|++
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~ 53 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVR 53 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999988765 677899999999999999999999999987754
No 202
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.21 E-value=1.1e-06 Score=92.16 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccccccchhhHHHHHHHHHHhhcCCCeEEEEccchhhccCC
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 519 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s~~~Gese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r 519 (1086)
+++..+++|||||||||||++|.++|+.++..++.+..+. +.+ .++.+.. ..|++|||+|.-
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~~--~kIiiLDEad~~---- 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLTD--TKVAMLDDATTT---- 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGTT--CSSEEEEEECHH----
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccCC--CCEEEEECCCch----
Confidence 4555678999999999999999999999865543321100 000 0122222 249999999732
Q ss_pred CCCCchhHHHHHHHHHHHhhccc------cC-----CCeeEEeccCCC
Q 001395 520 KDGGEELSQRMVATLLNLMDGVC------RT-----DGVLVIAATNRP 556 (1086)
Q Consensus 520 ~~~~~~~~~rv~~~Ll~lLd~l~------~~-----~~viVIatTN~~ 556 (1086)
....+...+.+.||+.. .+ ....+|.|||..
T Consensus 116 ------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~ 157 (212)
T 1tue_A 116 ------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIH 157 (212)
T ss_dssp ------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSC
T ss_pred ------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCC
Confidence 12334456777777741 11 234688899863
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.15 E-value=1.5e-06 Score=91.23 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=62.4
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccccccccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcC
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 885 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~~~~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~ 885 (1086)
++..++++||||||||||++|.++|+.+...++.+..+.. ..| +..+ ....||+|||+|.=
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~----- 115 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTT----- 115 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHH-----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCch-----
Confidence 4444679999999999999999999998654432211100 000 0111 12349999999831
Q ss_pred CCCCCCCccHHHHHHHHHHHhccc------cC-----CCEEEEEecCCCCC---CChhhhCCCCcceEeecCC
Q 001395 886 KESDGVSVSDRVMSQLLVELDGLH------QR-----VNVTVIAATNRPDK---IDPALLRPGRFDRLLYVGP 944 (1086)
Q Consensus 886 ~~~~~~~~~~~v~~~LL~~Ld~~~------~~-----~~v~VI~aTN~p~~---lD~aLlrpgRFd~~I~~~~ 944 (1086)
....+...+-+.|++.. .+ ..-.+|.|||.+-. .-+.|.+ |+. .+.|+.
T Consensus 116 -------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~ 178 (212)
T 1tue_A 116 -------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPN 178 (212)
T ss_dssp -------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCS
T ss_pred -------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCC
Confidence 11222334555566631 01 13478899997522 2345666 763 556653
No 204
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.07 E-value=4.3e-05 Score=86.37 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=114.7
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh---CC-cEEEEeCCccccccccccHHHHHHHHHHHH----hcCCeEEEEecCch
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA---GL-NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDG 879 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~---~~-~fi~v~~sel~~~~vGese~~ir~lf~~A~----~~~p~ILflDEid~ 879 (1086)
.+..+|||||+|+||++.++.++... +. ++..+.. -+ +..++++++.+. .+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cC--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45569999999999999999998754 32 2211111 01 123455555443 34567999999986
Q ss_pred -hhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC------CCChhhhCCCCcceEeecCCCCHHHHHH
Q 001395 880 -LAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD------KIDPALLRPGRFDRLLYVGPPNETDREE 952 (1086)
Q Consensus 880 -L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~------~lD~aLlrpgRFd~~I~~~~P~~~eR~~ 952 (1086)
+ ....++.|+..++.. ..++++|.+|+.++ .+-+++.+ |+ .++.|.+++.++...
T Consensus 88 kl-------------~~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GP-------------NAAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CC-------------CTTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CC-------------ChHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 4 334677888888854 34566666555543 34567776 65 578899999999999
Q ss_pred HHHHHHhcCCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 001395 953 IFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 1017 (1086)
Q Consensus 953 Il~~~l~~~~l~~-d~~l~~La~~t~g~sgadl~~l~~~A~~~A~~~~~~~~~It~~d~~~al~~~ 1017 (1086)
.++..+++.++.- +..+..|++.+.| +-+++.+.++..+..+ ....||.+++...+...
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~-----~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW-----PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC-----TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHhhh
Confidence 9999888777552 3346677777766 4455555555544432 23467777776665544
No 205
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.01 E-value=1e-05 Score=86.17 Aligned_cols=118 Identities=21% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH--c-------CCcEEEEcccccccc--------cch----------------
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHD--S-------GVNLFTVNGPEVVSQ--------NYG---------------- 486 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~--l-------g~~~i~I~~s~l~s~--------~~G---------------- 486 (1086)
|++++..++|+||||+|||++++.++.. + +...+.+++.+.... .+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 6788899999999999999999999984 3 456777776552100 000
Q ss_pred ---hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhH--HHHHHHHHHHhhccccCCCeeEEeccCCCC
Q 001395 487 ---ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATNRPD 557 (1086)
Q Consensus 487 ---ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~--~rv~~~Ll~lLd~l~~~~~viVIatTN~~d 557 (1086)
+....+..+.+.+....|.+|+|||+..+....-.+..+.. ++....++..|..+....++.||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 11112223334444567899999999887643211111111 222444444444443444667777776543
No 206
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=3e-05 Score=79.85 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNL 472 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~ 472 (1086)
.+.|.||+|+|||||++.+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876544
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.95 E-value=3e-05 Score=81.16 Aligned_cols=117 Identities=18% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc--cc-------------------cccc--cHHHHHHHH
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF--SK-------------------WVGE--SEKAVRSLF 861 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~--~~-------------------~vGe--se~~ir~lf 861 (1086)
|+++..-++|+||||+|||++++.+|...+.+.+.++..+-+ .. ++.. .....+..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 355555689999999999999999988667788888875410 00 0000 011112233
Q ss_pred HHHH--hc-CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 862 AKAR--AN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 862 ~~A~--~~-~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
+.++ .. .|.+|+|||+..+....... ....+.+..++..|..+....++.||++++....
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~ 158 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENR----SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFD 158 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGS----STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCch----HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEc
Confidence 3322 22 48999999999875332110 1122444455555544433345667777766543
No 208
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.90 E-value=2.8e-05 Score=81.34 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccc
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE 479 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~ 479 (1086)
|++++.-++|+||||+||||+++.+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 6888999999999999999999999885566777777544
No 209
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.90 E-value=1.6e-05 Score=83.65 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc------cc-------------------------
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ------NY------------------------- 485 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~------~~------------------------- 485 (1086)
|++++..++|+||||+|||||++.++..+ +..++.++....... ..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 57788899999999999999999998654 445554443211000 00
Q ss_pred -----hhhHHHHHHHHHHhhcCCCe--EEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 486 -----GESEQALHEVFDSASQSAPA--VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 486 -----Gese~~l~~vf~~a~~~~P~--ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.........+.+.+....|. +|+|||+..+... + .....+ ++..|..+....++.+|++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~--d--~~~~~~----~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD--K--PAMARK----ISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS--C--GGGHHH----HHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC--C--HHHHHH----HHHHHHHHHHhCCCeEEEEeccC
Confidence 01122233344444556788 9999999887531 1 111233 33333333334467778777654
No 210
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.89 E-value=1.7e-05 Score=83.50 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=62.1
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccc--------------cc-------------------
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS--------------KW------------------- 849 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~--------------~~------------------- 849 (1086)
++...-++|+||||+||||+++.++... +..++.+....... .+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCcee
Confidence 4455558999999999999999998543 45555555432100 00
Q ss_pred c-c--ccHHHHHHHHHHHHhcCCe--EEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 850 V-G--ESEKAVRSLFAKARANAPS--IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 850 v-G--ese~~ir~lf~~A~~~~p~--ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
. . ......+.+.+.+....|. +|+|||+..+... ....+.+++..|..+....++.||++||..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~----------d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD----------KPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS----------CGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC----------CHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0 0 1122233444445556888 9999999977421 011123333444333334578899999876
No 211
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.88 E-value=1.8e-05 Score=83.46 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEcccccccc-c-------c-----------------
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVSQ-N-------Y----------------- 485 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---------g~~~i~I~~s~l~s~-~-------~----------------- 485 (1086)
|++++..+.|+||+|+|||||++.++..+ +...+.+++.+.... . .
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 67888999999999999999999999743 223666665442110 0 0
Q ss_pred --hhhHHHHHHHHHHhh-----cCCCeEEEEccchhhccCCCCCCchhHH--HHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 486 --GESEQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEELSQ--RMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 486 --Gese~~l~~vf~~a~-----~~~P~ILfIDEiD~l~~~r~~~~~~~~~--rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
++....+..+.+.+. ...|.+|+|||+.........++....+ +....++..|..+....++.||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 000111222333333 5688999999997764322222212222 2234555555554444467777787754
Q ss_pred CC
Q 001395 557 DS 558 (1086)
Q Consensus 557 d~ 558 (1086)
+.
T Consensus 181 ~~ 182 (231)
T 4a74_A 181 AN 182 (231)
T ss_dssp --
T ss_pred cC
Confidence 44
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.85 E-value=3e-05 Score=82.78 Aligned_cols=128 Identities=23% Similarity=0.302 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHH--HH--cCCcEEEEcccccccc------cch-----------------------
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCA--HD--SGVNLFTVNGPEVVSQ------NYG----------------------- 486 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA--~~--lg~~~i~I~~s~l~s~------~~G----------------------- 486 (1086)
|++++..+.|.||+|+|||||++.++ .. .+...+.++....... .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 67889999999999999999999988 32 2344444443221100 000
Q ss_pred -------------hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEecc
Q 001395 487 -------------ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 553 (1086)
Q Consensus 487 -------------ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatT 553 (1086)
..+.....+...+....|.+|+|||+-.+.....+ .....+.+..++..+ ... +..||.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d--~~~~~~~l~~l~~~l---~~~-g~tii~vt 179 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE--ERKIREVLLKLNTIL---LEM-GVTTILTT 179 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS--GGGHHHHHHHHHHHH---HHH-CCEEEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC--HHHHHHHHHHHHHHH---HHC-CCeEEEEE
Confidence 01222333344445578999999999877632111 111233333444433 333 56677778
Q ss_pred CCCCCCC-----ccccCCCCc-ceeeeh
Q 001395 554 NRPDSIE-----PALRRPGRL-DREIEI 575 (1086)
Q Consensus 554 N~~d~id-----paL~r~GRf-dr~I~i 575 (1086)
+..+... +.+.. -+ |+.+.+
T Consensus 180 H~~~~~~~~~~~~~i~~--~~aD~vi~l 205 (251)
T 2ehv_A 180 EAPDPQHGKLSRYGIEE--FIARGVIVL 205 (251)
T ss_dssp CCC----CCSSSSSCGG--GGCSEEEEE
T ss_pred CCCCCCcccccccChhh--EeeeEEEEE
Confidence 7766542 22222 35 777766
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.84 E-value=4.1e-05 Score=81.72 Aligned_cols=129 Identities=21% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHH--HH--hCCcEEEEeCCccccc------cccc----------------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVA--SE--AGLNFLAVKGPELFSK------WVGE---------------------- 852 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA--~~--~~~~fi~v~~sel~~~------~vGe---------------------- 852 (1086)
|++...-++|.||||+|||||+++++ .. .+...+.+...+.... .+|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34555569999999999999999998 33 3455555554321100 0010
Q ss_pred --------------cHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEE
Q 001395 853 --------------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 918 (1086)
Q Consensus 853 --------------se~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~ 918 (1086)
.......+...+....|.+|+|||+.++.....+. ....+.+..++..+. ..++.||+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~----~~~~~~l~~l~~~l~----~~g~tii~ 177 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE----RKIREVLLKLNTILL----EMGVTTIL 177 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG----GGHHHHHHHHHHHHH----HHCCEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH----HHHHHHHHHHHHHHH----HCCCeEEE
Confidence 11122333444455789999999999876432110 122333555665553 23778999
Q ss_pred ecCCCCCCC-----hhhhCCCCc-ceEeecC
Q 001395 919 ATNRPDKID-----PALLRPGRF-DRLLYVG 943 (1086)
Q Consensus 919 aTN~p~~lD-----~aLlrpgRF-d~~I~~~ 943 (1086)
+||..+... ..+.. -+ |+++.+.
T Consensus 178 vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 178 TTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 999876642 11222 35 7777664
No 214
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.82 E-value=1.5e-05 Score=83.92 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=67.4
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEeCCccccc--------cccc---------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGE--------------- 852 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~~sel~~~--------~vGe--------------- 852 (1086)
|+++..-+.|+||||+|||||++.++... +...+.++..+.... ..+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 34444559999999999999999999853 334677776542110 0000
Q ss_pred c----HHHHHHHHHHHH-----hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 853 S----EKAVRSLFAKAR-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 853 s----e~~ir~lf~~A~-----~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
. ...+..+.+.+. ...|.+|+|||+..................+.+.+++..|..+....++.||++||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 0 011223333334 5689999999999875442211100011112233455555444334478899999855
Q ss_pred CC
Q 001395 924 DK 925 (1086)
Q Consensus 924 ~~ 925 (1086)
..
T Consensus 181 ~~ 182 (231)
T 4a74_A 181 AN 182 (231)
T ss_dssp --
T ss_pred cC
Confidence 44
No 215
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.82 E-value=3.8e-05 Score=83.95 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.9
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCC
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGL 835 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~ 835 (1086)
..+++||||||||||++|++||+....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999997654
No 216
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.79 E-value=1.7e-05 Score=87.00 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=42.1
Q ss_pred HHHHHHHHhc------CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARAN------APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~------~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|... .|.+|++||+.+ +.+.....+++..|..+....+..||++||+.+.
T Consensus 149 Rv~iAraL~~~~~~~~~p~lLllDEPts------------~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 149 RVQLARVLAQLWQPQPTPRWLFLDEPTS------------ALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHHHTCCSSCCCEEEEECCCCS------------SCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCccc------------cCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 5667777777 999999999884 4556666677777766655557899999998654
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.79 E-value=2.4e-05 Score=83.22 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH--h-------CCcEEEEeCCccccc--------cccc---------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE--A-------GLNFLAVKGPELFSK--------WVGE--------------- 852 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~--~-------~~~fi~v~~sel~~~--------~vGe--------------- 852 (1086)
|++...-++|+||||+|||++++.+|.. . +...+.++..+.+.. .+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3455556899999999999999999984 2 457788877652110 0110
Q ss_pred cHH----HHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccH--HHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 853 SEK----AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 853 se~----~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~--~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
... .+..+.+.+....|.+|+|||+..+....-... ..... +.+..++..|..+....++.||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 111 122234444556899999999998764311000 01121 1245555555544444578888888755443
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.78 E-value=5.3e-06 Score=91.46 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3566788889999999999999999999765
No 219
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.76 E-value=8.7e-05 Score=84.62 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=73.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc----------------chhhHHHHHHHHHHh
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----------------YGESEQALHEVFDSA 499 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~----------------~Gese~~l~~vf~~a 499 (1086)
-|++++.-++|+||||+|||||+..++..+ +..+++++........ ....+..+..+-...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 367888899999999999999999988764 5677777765532210 011233333222233
Q ss_pred hcCCCeEEEEccchhhccCC---CCCCch---hHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 500 SQSAPAVVFIDELDAIAPAR---KDGGEE---LSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 500 ~~~~P~ILfIDEiD~l~~~r---~~~~~~---~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
....+.+++||.+..+.+.. +..+.. ...+.+.+++..|..+....++.||++.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 44678999999998887511 111111 23456667777776666566677766543
No 220
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.75 E-value=0.00013 Score=82.45 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=100.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CC-c--EEEEcccccccccchhhHHHHHHHHHHh----hcCCCeEEEEccc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GV-N--LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDEL 512 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~-~--~i~I~~s~l~s~~~Gese~~l~~vf~~a----~~~~P~ILfIDEi 512 (1086)
....+|||||+|+||++.++.+++.+ +. + ++.+++ + ..++.+++.+ ......|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~--~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------N--TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------T--CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------C--CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 45679999999999999999998865 32 2 233321 1 1233343332 2344679999999
Q ss_pred hh-hccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC------CCCccccCCCCcceeeehhhhhhhhhcc
Q 001395 513 DA-IAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD------SIEPALRRPGRLDREIEIDMSFLFSLLK 585 (1086)
Q Consensus 513 D~-l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d------~idpaL~r~GRfdr~I~i~l~~~~~~~~ 585 (1086)
|. +. ....+.|+..++.. .+++++|.+++.++ .+.+++.+ |. ..+.+
T Consensus 86 ~~kl~-----------~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~---------- 139 (343)
T 1jr3_D 86 ENGPN-----------AAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTC---------- 139 (343)
T ss_dssp SSCCC-----------TTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEE----------
T ss_pred CCCCC-----------hHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEe----------
Confidence 87 52 12446678888764 34566666665543 34456665 44 34555
Q ss_pred cCCCCCCCHHHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHH
Q 001395 586 NSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 638 (1086)
Q Consensus 586 ~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~e 638 (1086)
..++..+....++..++..+..+++..++.++..+.| ..+++.+.++.
T Consensus 140 ----~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elek 187 (343)
T 1jr3_D 140 ----QTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALER 187 (343)
T ss_dssp ----CCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHH
T ss_pred ----eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHH
Confidence 7888999999999998888888889999999987766 44444444433
No 221
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.75 E-value=3.3e-05 Score=84.39 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGV 470 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~ 470 (1086)
++.++++||||||||||++|++||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998654
No 222
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.73 E-value=4.2e-05 Score=87.19 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=52.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc----ch------------hhHHHHHHHHHHh
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----YG------------ESEQALHEVFDSA 499 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~----~G------------ese~~l~~vf~~a 499 (1086)
-|++++..++|+||||+|||+||..++..+ +..++.++...-.... .| ..++.+..+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 367888999999999999999999887653 5566666654322110 11 1223232222334
Q ss_pred hcCCCeEEEEccchhhcc
Q 001395 500 SQSAPAVVFIDELDAIAP 517 (1086)
Q Consensus 500 ~~~~P~ILfIDEiD~l~~ 517 (1086)
....|.+|+||++..+.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 456789999999999874
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.70 E-value=1.4e-05 Score=88.06 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+....+..||++||+.+.+
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts------------~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTA------------GLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTT------------TCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred HHHHHHHHHcCCCEEEEECccc------------cCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 5567777788899999999885 34555666666666655422277899999988763
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.68 E-value=0.00011 Score=84.08 Aligned_cols=115 Identities=22% Similarity=0.296 Sum_probs=68.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc----c------------hhhHHHHHHHHHHhh
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----Y------------GESEQALHEVFDSAS 500 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~----~------------Gese~~l~~vf~~a~ 500 (1086)
|++++..++|+||||+|||++|..+|..+ +..++.++...-.... . ...+..+..+-....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 67888899999999999999998887653 5677777654322111 0 112232222222334
Q ss_pred cCCCeEEEEccchhhccCCCCC---Cch---hHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 501 QSAPAVVFIDELDAIAPARKDG---GEE---LSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 501 ~~~P~ILfIDEiD~l~~~r~~~---~~~---~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
...+.+|+||.+..+.+..... ++. ...+.+.+++..|..+....++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4678899999999987532211 110 12244455555555544556677776643
No 225
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.65 E-value=5.1e-05 Score=81.64 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+....+..||++||+++
T Consensus 153 Rv~iAral~~~p~llllDEPts------------~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTW------------ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 5567777778899999999984 445566666666666554334778999999864
No 226
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.63 E-value=6.9e-05 Score=84.36 Aligned_cols=115 Identities=16% Similarity=0.266 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEccccccc-c-------cch----------------
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVS-Q-------NYG---------------- 486 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---------g~~~i~I~~s~l~s-~-------~~G---------------- 486 (1086)
|++++..++|+||||+|||++|..+|... +..+++++...-.. . ..|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 68889999999999999999999988764 45677777654210 0 000
Q ss_pred hhH---HHHHHHHHHhhc-CCCeEEEEccchhhccCCCCCCchhH--HHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 487 ESE---QALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 487 ese---~~l~~vf~~a~~-~~P~ILfIDEiD~l~~~r~~~~~~~~--~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
..+ ..+..+...+.. ..+.+|+||.+..+......+..+.. ...+.+++..|..+....++.||++.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 011 123333334444 67889999999988643211111111 224555555555554445666776644
No 227
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.63 E-value=7.3e-05 Score=85.17 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=69.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEccccccc-c-------c-------------ch--
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVS-Q-------N-------------YG-- 486 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l---------g~~~i~I~~s~l~s-~-------~-------------~G-- 486 (1086)
.|++++.-+.|+||||+|||||++.++..+ +..++++++.+... . . +.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 578889999999999999999999999876 24567777654310 0 0 00
Q ss_pred ----hhHHHHHHHHHHhhc-----CCCeEEEEccchhhccCCCCCCchhH--HHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 487 ----ESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 487 ----ese~~l~~vf~~a~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~--~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
...+.+..+-..+.. ..|.+|+|||+-.++.....+..+.. ...+..++..|..+....++.||.+++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 011112222222233 57899999999877632111111111 1234555555555544556777777765
Q ss_pred CC
Q 001395 556 PD 557 (1086)
Q Consensus 556 ~d 557 (1086)
..
T Consensus 286 ~~ 287 (349)
T 1pzn_A 286 QA 287 (349)
T ss_dssp C-
T ss_pred cc
Confidence 44
No 228
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.63 E-value=4.3e-05 Score=87.15 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.+|++||+.+ ..+.....++..++.......+..||++||+.+.
T Consensus 146 RValArAL~~~P~lLLLDEPts------------~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFS------------ALDEQLRRQIREDMIAALRANGKSAVFVSHDREE 201 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 6667788888999999999874 3445555556555544433457899999998754
No 229
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.62 E-value=1.5e-05 Score=87.39 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=69.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEcccccccc--------------------------------
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQ-------------------------------- 483 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s~l~s~-------------------------------- 483 (1086)
++.+.++..+.|.||+|+|||||+++++..+.. --+.+++.++...
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence 356678889999999999999999999976521 1233333221100
Q ss_pred --c-chhhHHHHHHHHH--------------------------HhhcC------CCeEEEEccchhhccCCCCCCchhHH
Q 001395 484 --N-YGESEQALHEVFD--------------------------SASQS------APAVVFIDELDAIAPARKDGGEELSQ 528 (1086)
Q Consensus 484 --~-~Gese~~l~~vf~--------------------------~a~~~------~P~ILfIDEiD~l~~~r~~~~~~~~~ 528 (1086)
+ ..+....+..+++ .|... .|.||++||. .+..+.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEP----------ts~LD~ 180 (266)
T 4g1u_C 111 APYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEP----------TSALDL 180 (266)
T ss_dssp TTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCC----------CSSCCH
T ss_pred hhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCc----------cccCCH
Confidence 0 0011222333332 33445 8999999994 334456
Q ss_pred HHHHHHHHHhhccccCCCeeEEeccCCCCC
Q 001395 529 RMVATLLNLMDGVCRTDGVLVIAATNRPDS 558 (1086)
Q Consensus 529 rv~~~Ll~lLd~l~~~~~viVIatTN~~d~ 558 (1086)
.....++++|..+...++..||.+|+..+.
T Consensus 181 ~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 181 YHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 666777777777766667778888887654
No 230
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.62 E-value=0.00012 Score=65.62 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.7
Q ss_pred HHHHHhhhcCCeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEc
Q 001395 305 QTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLY 377 (1086)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~ 377 (1086)
...+|++|.||||..||.|.++++|+.+.|.|+++.|. +++|+++|+|.+.
T Consensus 30 ~~~lk~~L~grPV~~GD~I~i~~~G~~i~F~Vv~t~P~----------------------~V~Vt~~T~I~i~ 80 (83)
T 2jv2_A 30 VDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPS----------------------PLRVEDRTKITLV 80 (83)
T ss_dssp HHHHHHHHTTSEECTTCEEEEEETTEEEEEEEEEEESS----------------------SEECCTTSEEEEC
T ss_pred HHHHHHHHCCCCccCCCEEEEeeCCCEEEEEEEEecCc----------------------cEEECCCcEEEEE
Confidence 46779999999999999999999999999999999884 5899999999984
No 231
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.61 E-value=5.8e-05 Score=86.24 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||++||+.+ ..+......++..|..+....+..||++||+.+.
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs------------~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATS------------ALDPATTRSILELLKDINRRLGLTILLITHEMDV 226 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCc------------cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 5667777788899999999984 4456666777777766655557899999998754
No 232
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.60 E-value=6.5e-05 Score=76.47 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHhhcCCCeEEEEccchhhccCC------CCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC
Q 001395 496 FDSASQSAPAVVFIDELDAIAPAR------KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559 (1086)
Q Consensus 496 f~~a~~~~P~ILfIDEiD~l~~~r------~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i 559 (1086)
+..+....|.+|++||--..+..+ .....+.-.+....+...+..+... +..+|.+|+.++.+
T Consensus 94 iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 94 MAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred HHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 344556779999999965443111 0111122222557777777777555 66777778776544
No 233
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.60 E-value=9.4e-05 Score=84.04 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=69.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH---------cCCcEEEEcccccccc--------cch---------------
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHD---------SGVNLFTVNGPEVVSQ--------NYG--------------- 486 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~---------lg~~~i~I~~s~l~s~--------~~G--------------- 486 (1086)
-|++++..++|+||||+|||++|..+|.. .+..+++++....... ..|
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 36888889999999999999999998876 2456777776542110 000
Q ss_pred -hhH---HHHHHHHHHhhc--CCCeEEEEccchhhccCCCCCCchhH--HHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 487 -ESE---QALHEVFDSASQ--SAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 487 -ese---~~l~~vf~~a~~--~~P~ILfIDEiD~l~~~r~~~~~~~~--~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
..+ ..+..+.+.+.. ..+.+|+||.+..+......+..+.. ...+.+++..|..+....++.||++.+.
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 011 122222333444 67889999999988743211111112 2235555555555555556677766543
No 234
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.60 E-value=0.00011 Score=83.80 Aligned_cols=31 Identities=39% Similarity=0.499 Sum_probs=27.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|||||||.|+||...
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3567788899999999999999999999865
No 235
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.59 E-value=9.8e-05 Score=85.58 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEcccccccc--------cch----------------
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVSQ--------NYG---------------- 486 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---------g~~~i~I~~s~l~s~--------~~G---------------- 486 (1086)
|+.++..++|+||||+|||||++.++-.. +...+++++.+.... .+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 78889999999999999999999765322 234777776542111 001
Q ss_pred ---hhHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCc--hhHHHHHHHHHHHhhccccCCCeeEEeccCC
Q 001395 487 ---ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE--ELSQRMVATLLNLMDGVCRTDGVLVIAATNR 555 (1086)
Q Consensus 487 ---ese~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~--~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~ 555 (1086)
.....+..+.+.+....|.+|+||++-.+......+.. ...++.+..++..|..+....++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 00112223333344567899999999888753322111 1223445667777776665567778877764
No 236
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.58 E-value=6.5e-05 Score=86.34 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.||++||..+ ..+.....+++.+|..+....+..+|.+||+.+.
T Consensus 141 RVaiArAL~~~P~lLLLDEPts------------~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLS------------NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCc------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 5667777788899999999874 4456666677777766554457899999998754
No 237
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.58 E-value=8.4e-05 Score=85.38 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=69.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEcccccccc----------------c----------c----
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ----------------N----------Y---- 485 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~--~i~I~~s~l~s~----------------~----------~---- 485 (1086)
++.+.++..+.|.||+|||||||.++||..+... -+.+++.++... + +
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~ 102 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH
Confidence 3567788899999999999999999999865321 233333322100 0 0
Q ss_pred -h----hhHHHHHHHHH--------------------------HhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHH
Q 001395 486 -G----ESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL 534 (1086)
Q Consensus 486 -G----ese~~l~~vf~--------------------------~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~L 534 (1086)
+ +..+++.++++ .|....|.||++||- .+..+.....++
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP----------ts~LD~~~~~~l 172 (381)
T 3rlf_A 103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP----------LSNLDAALRVQM 172 (381)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST----------TTTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC----------CcCCCHHHHHHH
Confidence 0 11223344433 233457899999994 334456666777
Q ss_pred HHHhhccccCCCeeEEeccCCCCC
Q 001395 535 LNLMDGVCRTDGVLVIAATNRPDS 558 (1086)
Q Consensus 535 l~lLd~l~~~~~viVIatTN~~d~ 558 (1086)
+.+|..+....++.+|.+|+..+.
T Consensus 173 ~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 173 RIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHHHHHHHHHHCCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEEECCHHH
Confidence 777777655546777888887654
No 238
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.56 E-value=5e-05 Score=77.29 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHH----HHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 857 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDR----VMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 857 ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~----v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
-+..+++|....|.+|++||..+-+..+........+... ....+...|..+... +..+|.+||+++.
T Consensus 90 qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 90 PLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEE 161 (171)
T ss_dssp HHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHH
T ss_pred HHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHH
Confidence 3456667777889999999998755433110000012222 334555555554433 7788899987654
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.55 E-value=0.00015 Score=82.57 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=72.0
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCccccc-------------cc---cccHHHHHHHHHHHHh
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSK-------------WV---GESEKAVRSLFAKARA 866 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~-------------~v---Gese~~ir~lf~~A~~ 866 (1086)
+++..-++|+||||+|||||+..++.. .+..++.++..+.... ++ ...+..+..+...++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 444555899999999999999999876 3667788887653221 00 0112222222223345
Q ss_pred cCCeEEEEecCchhhhh-c--CCCCC-CCCccHHHHHHHHHHHhccccCCCEEEEEecC
Q 001395 867 NAPSIIFFDEIDGLAAI-R--GKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 921 (1086)
Q Consensus 867 ~~p~ILflDEid~L~~~-r--~~~~~-~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN 921 (1086)
..+.++++|.+..+.+. . +..++ +.....+.+.+++..|..+....++.||++.+
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 77899999999988752 1 11111 11123466777888777766666777777643
No 240
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.55 E-value=0.00013 Score=83.36 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=71.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEccccccc------------------------c-c------
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS------------------------Q-N------ 484 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~--~i~I~~s~l~s------------------------~-~------ 484 (1086)
++.+.++..+.|.||+|+|||||+++++..+... -+.+++.++.. . .
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 3667888999999999999999999999765221 23344332210 0 0
Q ss_pred -----ch----hhHHHHHHHHH--------------------------HhhcCCCeEEEEccchhhccCCCCCCchhHHH
Q 001395 485 -----YG----ESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQR 529 (1086)
Q Consensus 485 -----~G----ese~~l~~vf~--------------------------~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~r 529 (1086)
.+ +..+++.++++ .|....|.||++||. .+..+..
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEP----------Ts~LD~~ 197 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQA----------TSALDPA 197 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEEST----------TTTSCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC----------CccCCHH
Confidence 00 11122333333 334567999999995 3344566
Q ss_pred HHHHHHHHhhccccCCCeeEEeccCCCCC
Q 001395 530 MVATLLNLMDGVCRTDGVLVIAATNRPDS 558 (1086)
Q Consensus 530 v~~~Ll~lLd~l~~~~~viVIatTN~~d~ 558 (1086)
....++++|..+....+..||.+|+..+.
T Consensus 198 ~~~~i~~lL~~l~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 198 TTRSILELLKDINRRLGLTILLITHEMDV 226 (366)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 77778888877765557788888887654
No 241
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.55 E-value=7.1e-05 Score=85.31 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCccccc----ccc------------ccHHHHHHHHHHHH
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSK----WVG------------ESEKAVRSLFAKAR 865 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~----~vG------------ese~~ir~lf~~A~ 865 (1086)
|+++..-++|+||||+|||+||..++.. .+...+.++..+-... ..| ..++.+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 3455555999999999999999999765 3567777776543221 111 11222222223344
Q ss_pred hcCCeEEEEecCchhhhhcC---CCCCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 866 ANAPSIIFFDEIDGLAAIRG---KESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 866 ~~~p~ILflDEid~L~~~r~---~~~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
...|.+|+||++..+..... ..++. .+...+.+.+++..|.......++.||++++...
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 56799999999999874211 00000 0112234556666665443445677777765443
No 242
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.54 E-value=3.5e-05 Score=84.74 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=27.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++|+..+
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567788999999999999999999999865
No 243
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.54 E-value=0.00012 Score=80.57 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|..+++|....|.||++||+.+ ..+......++..|..+....+..||++||+++. .. ++|
T Consensus 164 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-----~~--~~d 224 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATS------------ALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-----AE--RAH 224 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-----HT--TCS
T ss_pred HHHHHHHHhcCCCEEEEECCcc------------CCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-----HH--hCC
Confidence 5556777778899999999985 4455666667777766543346788999987543 33 356
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 225 ~v~~l 229 (271)
T 2ixe_A 225 HILFL 229 (271)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65554
No 244
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=0.00012 Score=83.26 Aligned_cols=120 Identities=14% Similarity=0.211 Sum_probs=69.1
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEeCCcccc-c--------------------cccc--
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFS-K--------------------WVGE-- 852 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~~sel~~-~--------------------~vGe-- 852 (1086)
|++...-+.|+||||+|||+|++.++... +...+.++..+.+. . ++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 44455559999999999999999999876 24567787755310 0 0000
Q ss_pred cHHHHHHHH----HHHHh-----cCCeEEEEecCchhhhhcCCCCCCCCccH--HHHHHHHHHHhccccCCCEEEEEecC
Q 001395 853 SEKAVRSLF----AKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATN 921 (1086)
Q Consensus 853 se~~ir~lf----~~A~~-----~~p~ILflDEid~L~~~r~~~~~~~~~~~--~v~~~LL~~Ld~~~~~~~v~VI~aTN 921 (1086)
.......++ ..+.. ..|.+|+|||+.++........ ..... ..+.+++..|..+....++.||++++
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~--~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR--GALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST--TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc--ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 011112222 22333 5799999999998864321110 01112 23555666665554455788888887
Q ss_pred CCCCC
Q 001395 922 RPDKI 926 (1086)
Q Consensus 922 ~p~~l 926 (1086)
.....
T Consensus 285 ~~~~~ 289 (349)
T 1pzn_A 285 VQARP 289 (349)
T ss_dssp CC---
T ss_pred ccccc
Confidence 65443
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.53 E-value=6.4e-05 Score=80.86 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3567788999999999999999999999765
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.53 E-value=0.00012 Score=78.15 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=26.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
+.+.++..+.|.||+|+|||||+++++..+
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556788889999999999999999999765
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.52 E-value=3.7e-05 Score=82.06 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+... +..||++||+.+. .+ .+|
T Consensus 148 rv~laral~~~p~lllLDEPt~------------~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~-----~~--~~d 207 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTG------------NLDSANTKRVMDIFLKINEG-GTSIVMVTHEREL-----AE--LTH 207 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH-----HT--TSS
T ss_pred HHHHHHHHHcCCCEEEEeCCCC------------CCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH-----HH--hCC
Confidence 4456666677899999999884 34555666666666555434 6789999997542 23 456
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 208 ~v~~l 212 (224)
T 2pcj_A 208 RTLEM 212 (224)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 248
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.52 E-value=0.0002 Score=77.96 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
+.+.++..+.|.||+|+|||||+++++..+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556788889999999999999999999765
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.52 E-value=0.0001 Score=80.38 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+... +..||++||+.+.+
T Consensus 161 rv~iAraL~~~p~lllLDEPts------------~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIA------------GVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTT
T ss_pred HHHHHHHHHcCCCEEEEeCCcc------------CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHH
Confidence 5556677778899999999885 34556666666666655433 77899999988764
No 250
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.51 E-value=1.2e-05 Score=72.18 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHccCccccchHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 001395 595 AQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 649 (1086)
Q Consensus 595 ~eR~~IL~~~l~~~~~~l~d~~l~~La~~t~GfsgaDL~~L~~eA~~~a~rr~~~ 649 (1086)
++|.+||+.+++++++. .+.+++.++..|+||+|+||.++|++|++.|+++...
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY 54 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 46899999999987753 5678899999999999999999999999999998543
No 251
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.51 E-value=0.00014 Score=83.15 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=62.7
Q ss_pred CcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCC-cccc---------ccccccHHHHHHHHHHHHhcCCeEEEEec
Q 001395 811 GILMFGPPGCSKTLMARAVASEA----GLNFLAVKGP-ELFS---------KWVGESEKAVRSLFAKARANAPSIIFFDE 876 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~s-el~~---------~~vGese~~ir~lf~~A~~~~p~ILflDE 876 (1086)
-+++.||+|+||||+.+++++.. +..++.+..+ ++.. ..++.........++.|....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48899999999999999998764 3455544432 1111 11222223456688889899999999999
Q ss_pred CchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 877 IDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 877 id~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
+.. ......+++... .+..||+++|..+.+
T Consensus 205 p~d---------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 205 MRD---------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCS---------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred CCC---------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 861 333444444432 256789999887653
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.00013 Score=83.20 Aligned_cols=115 Identities=23% Similarity=0.388 Sum_probs=66.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccccc----ch-----------hhHHHHHHHHHH-hh
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----YG-----------ESEQALHEVFDS-AS 500 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~~----~G-----------ese~~l~~vf~~-a~ 500 (1086)
|++++..++|+|+||+|||+||..+|..+ |..++.++...-.... .| .....+..+++. +.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57888899999999999999999887653 5677777764322110 01 111223333332 23
Q ss_pred cCCCeEEEEccchhhccCCC-C--CCch---hHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 501 QSAPAVVFIDELDAIAPARK-D--GGEE---LSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 501 ~~~P~ILfIDEiD~l~~~r~-~--~~~~---~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
...+.+|+||.+..+.+... . .++. ...+.+.+++..|..+....++.||++.+
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 46788999999998875221 0 0110 12233344444444433444666776543
No 253
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.50 E-value=0.00011 Score=80.50 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+... +..||++||+.+.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTS------------ALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 4456677778899999999885 34555666666666555433 7789999997644
No 254
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.48 E-value=0.00019 Score=78.40 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCCcc---cc--------ccccccHHHHHHHHHHHHhcCC
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL---FS--------KWVGESEKAVRSLFAKARANAP 869 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~sel---~~--------~~vGese~~ir~lf~~A~~~~p 869 (1086)
.+.+..-++|.||+|+||||+++++++.. ...++ +.+..+ .. ..+|......+..++.+....|
T Consensus 21 ~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 21 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP 99 (261)
T ss_dssp GGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCC
T ss_pred hhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCC
Confidence 33344448999999999999999998764 22332 222111 10 0111122345778888888899
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
.+|++||+.. ...+..+++... .+..|+++||..+
T Consensus 100 ~illlDEp~D---------------~~~~~~~l~~~~-----~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 100 DVIFVGEMRD---------------LETVETALRAAE-----TGHLVFGTLHTNT 134 (261)
T ss_dssp SEEEESCCCS---------------HHHHHHHHHHHH-----TTCEEEEEECCSS
T ss_pred CEEEeCCCCC---------------HHHHHHHHHHHc-----cCCEEEEEeCcch
Confidence 9999999851 112233343321 2567888998754
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.48 E-value=0.00017 Score=82.69 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=70.7
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCcccccc----cc-----------ccHHHHHHHHH-HHH
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSKW----VG-----------ESEKAVRSLFA-KAR 865 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~~----vG-----------ese~~ir~lf~-~A~ 865 (1086)
|+++..-++|+||||+|||++|..+|.. .+.+++.++...-...+ .| .....+...++ .++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 4555566999999999999999988765 36678888875532211 11 11122223333 234
Q ss_pred hcCCeEEEEecCchhhhhcCCCCC-C---CCccHHHHHHHHHHHhccccCCCEEEEEecC
Q 001395 866 ANAPSIIFFDEIDGLAAIRGKESD-G---VSVSDRVMSQLLVELDGLHQRVNVTVIAATN 921 (1086)
Q Consensus 866 ~~~p~ILflDEid~L~~~r~~~~~-~---~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN 921 (1086)
...+++|+||.+..+.......+. + .+...+.+.+++..|.......++.||++.+
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 467889999999998742211100 0 0122355677777776665666777777643
No 256
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.47 E-value=4.7e-05 Score=82.58 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.++++..+.|.||+|+|||||+++++..+
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556788899999999999999999999865
No 257
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.47 E-value=1.8e-05 Score=88.55 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=27.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.++++..+.|.||+|+|||||+++|++.+
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3567889999999999999999999999865
No 258
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.46 E-value=7e-05 Score=83.77 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||+|||+.+ ..+......++..|..+.. +..+|++||+...
T Consensus 198 RvaiARAL~~~p~iLlLDEPts------------~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 198 RVAIARTILKAPGIILLDEATS------------ALDTSNERAIQASLAKVCA--NRTTIVVAHRLST 251 (306)
T ss_dssp HHHHHHHHHHCCSEEEEECCSS------------CCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcc------------cCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHH
Confidence 5566777778899999999884 3344445555555554432 4578889997643
No 259
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.45 E-value=0.00016 Score=82.46 Aligned_cols=31 Identities=42% Similarity=0.547 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++||..+
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3556788889999999999999999999865
No 260
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00013 Score=83.42 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||..+ ..+.....++...|..+....+..+|++||+.+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s------------~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLS------------NLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGG------------GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccc------------cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 5567777788899999999885 3455566666666665543346789999998654
No 261
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.44 E-value=0.00016 Score=78.85 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567788899999999999999999999765
No 262
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.44 E-value=8.3e-05 Score=84.76 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ ..+.....++...|..+....+..+|++||+.+.
T Consensus 153 RvalArAL~~~P~lLLLDEP~s------------~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 208 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFA------------AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTC------------CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 5567777778899999999874 3455666666666665543446789999998654
No 263
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00017 Score=82.35 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|||||||.++||..+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3566788889999999999999999999865
No 264
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.43 E-value=0.00014 Score=82.96 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.+|++||+.+ ..+.....++...|..+....+..+|++||+.+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s------------~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLS------------NLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcc------------cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 5567778888999999999874 3455566666666655543346789999998654
No 265
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.43 E-value=0.00019 Score=82.27 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|||||||.++||..+
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3567788889999999999999999999865
No 266
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.43 E-value=0.00016 Score=83.00 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++||..+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3556788889999999999999999999865
No 267
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.43 E-value=0.0001 Score=84.67 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.+|++||..+ ..+.....++...|..+....+..+|++||+.+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s------------~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLS------------NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCc------------cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 5567777788899999999874 3455666666666665544446789999998654
No 268
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.42 E-value=0.00011 Score=85.23 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=69.1
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEeCCccccc--------ccccc--------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGES-------------- 853 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~~sel~~~--------~vGes-------------- 853 (1086)
|+.+..-++|+||||+|||+|++.++-.. +...+.++..+.+.. .+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 45556669999999999999999776332 345778877653211 01100
Q ss_pred -----HHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCcc--HHHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 854 -----EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS--DRVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 854 -----e~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~--~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
...+..+...+....|.+|+||++..+........ .+.. .+.+.+++..|..+....++.||++++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~--g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGR--GELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCc--cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 11122333444456799999999998764321110 1112 23346667777666555688888888763
No 269
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.42 E-value=0.00012 Score=82.41 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEeCCccccc--------cccc---------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGE--------------- 852 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~~sel~~~--------~vGe--------------- 852 (1086)
|+++..-++|+||||+|||++|..+|... +...+.++...-+.. ..|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45555669999999999999999998764 567788887653110 0010
Q ss_pred -cH---HHHHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccH--HHHHHHHHHHhccccCCCEEEEEecC
Q 001395 853 -SE---KAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATN 921 (1086)
Q Consensus 853 -se---~~ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~--~v~~~LL~~Ld~~~~~~~v~VI~aTN 921 (1086)
.+ ..+..+...++. ..+.+|+||++..+........ ....+ ..+.+++..|..+....++.||++.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~--g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR--ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT--TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc--ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 11 112333444455 6789999999999875421110 11222 34667777776665555777777654
No 270
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.41 E-value=0.0001 Score=80.33 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+.. .+..||++||+++.
T Consensus 154 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~ 208 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTS------------GLDVLNAREVRKILKQASQ-EGLTILVSSHNMLE 208 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcc------------ccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH
Confidence 4556667778899999999884 3455555666666655433 36788899987643
No 271
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.40 E-value=0.00018 Score=82.08 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++||..+
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3566788889999999999999999999865
No 272
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=97.39 E-value=0.0012 Score=68.42 Aligned_cols=157 Identities=19% Similarity=0.252 Sum_probs=108.9
Q ss_pred ecccccCCC-CcceeeecccccccCCCCCCCeeeeeeeccCccccCCcCCccchHHHhhhhcCcccccccccccCeEEEE
Q 001395 63 QITDIETDS-RGCKIWLSESSMLASSLAPGSLVSVSLPVSGKRFSNGFPLSSLADECVQQFGNESLDQTANQVGSYFALA 141 (1086)
Q Consensus 63 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1086)
+|.+-.+++ +.+.++|+..+|-..+|.+|+.|.+. |.--..|
T Consensus 10 ~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~-------------------------------------G~r~t~a 52 (185)
T 1cz4_A 10 RVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIE-------------------------------------KVRKTVG 52 (185)
T ss_dssp EEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEE-------------------------------------SSSEEEE
T ss_pred EEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEE-------------------------------------cCCeEEE
Confidence 456656666 56899999999999999999999883 2224668
Q ss_pred EeccC--cccccccceeecccccccCCCCCcceEEEEecccccccccccCCCCCCCCCCCceeeeccccceecccccccc
Q 001395 142 TVFPS--CKVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANHFSVCTCQELHLELVPLRSR 219 (1086)
Q Consensus 142 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1086)
+|+|. ...-++-||++..+---+|- -.|-.|-|+|..- ...+.+.|. |..
T Consensus 53 ~v~~~~~ed~~~g~Irid~~~R~N~gv-~iGD~V~V~~~~~-----------------------~~A~~V~l~--P~~-- 104 (185)
T 1cz4_A 53 RVYRARPEDENKGIVRIDSVMRNNCGA-SIGDKVKVRKVRT-----------------------EIAKKVTLA--PII-- 104 (185)
T ss_dssp EEEECSSTTTTTSEEECCHHHHHHHTC-CTTCEEEEEEECC-----------------------CBCSEEEEE--EEC--
T ss_pred EEEEcCcCcCCCCEEEeCHHHHhccCC-CCCCEEEEEECCC-----------------------CCccEEEEe--ccc--
Confidence 88886 34556778888665555554 3567788888542 222333333 320
Q ss_pred cccCccccccccccchhhccccCCCcccCCCCCCCCCCCCcccccCCCCCccccccccccCcCCCcccchhhhhhhccHh
Q 001395 220 LKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSSQSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDES 299 (1086)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1086)
.|. + .+ . +. ++
T Consensus 105 --~~~---------------~---~~-~----------~~------------------------------------~~-- 115 (185)
T 1cz4_A 105 --RKD---------------Q---RL-K----------FG------------------------------------EG-- 115 (185)
T ss_dssp --STT---------------C---CS-C----------CC------------------------------------SS--
T ss_pred --ccc---------------c---cc-c----------cc------------------------------------cc--
Confidence 000 0 00 0 00 01
Q ss_pred HHHHHHHHHHhhhcCCeecCCCEEEEee---cCc-eeEEEEEeecCCCcccccCCCCccccccccCCCC-cEEEcCCceE
Q 001395 300 AIKLLQTCAASWLYSRSLLCGNLVAVPM---LSE-ISIFLVIGANKLPADLTNERSQPQVTESMDHESN-AFVINHETKV 374 (1086)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~T~v 374 (1086)
+..+++++|.||||.+||.|.+++ .|. .+.|.|++++|. + +++|+++|+|
T Consensus 116 ----~~~~l~~~l~~rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~---------------------~~~v~Vt~~T~I 170 (185)
T 1cz4_A 116 ----IEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPS---------------------KVPVEIGEETKI 170 (185)
T ss_dssp ----HHHHHHHHHTTCEECTTCEECCSSCCCSSCCCCEEEEEEESSS---------------------SSCEECCTTCEE
T ss_pred ----hHHHHHHHHCCCcccCCCEEEEeeeccCCCeEEEEEEEEEcCC---------------------CceEEEcCCeEE
Confidence 245678999999999999999997 888 899999999997 5 7999999999
Q ss_pred EEcC
Q 001395 375 YLYP 378 (1086)
Q Consensus 375 ~~~~ 378 (1086)
.+..
T Consensus 171 ~i~~ 174 (185)
T 1cz4_A 171 EIRE 174 (185)
T ss_dssp EECS
T ss_pred EECC
Confidence 9854
No 273
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.39 E-value=0.0001 Score=83.77 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.+|++||+.+ ..+......+...|..+....+..+|++||+.+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s------------~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLS------------ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSST------------TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccc------------cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5556777778899999999874 3455666666666665544447889999997654
No 274
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.38 E-value=0.00013 Score=83.85 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||..+ ..+.....++...|..+....+..+|++||+.+.
T Consensus 147 RvalArAL~~~P~lLLLDEP~s------------~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLS------------NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTT------------TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCc------------cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 5557777778899999999874 3455566666666655543346789999998654
No 275
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.38 E-value=7.2e-05 Score=81.90 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=27.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4567788899999999999999999999865
No 276
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.38 E-value=0.001 Score=80.58 Aligned_cols=171 Identities=11% Similarity=0.158 Sum_probs=95.4
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHH-------h--CCcEEEEeCC
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE-------A--GLNFLAVKGP 843 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~-------~--~~~fi~v~~s 843 (1086)
.-..++|.+...++|.+.+... ....+-++|+||+|+|||+||+.++.. . +.-++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 3456899999999888887531 112344899999999999999998642 2 1223334332
Q ss_pred c---ccccc------c----------cccHHHHHHHHHHHHhc--CCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHH
Q 001395 844 E---LFSKW------V----------GESEKAVRSLFAKARAN--APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 902 (1086)
Q Consensus 844 e---l~~~~------v----------Gese~~ir~lf~~A~~~--~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL 902 (1086)
+ +.... . ......+...+...... .|.+|+||+++.. . .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~---------------~----~- 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS---------------W----V- 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH---------------H----H-
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH---------------H----H-
Confidence 1 00000 0 11122223333332222 6889999999732 1 1
Q ss_pred HHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcH
Q 001395 903 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTG 981 (1086)
Q Consensus 903 ~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sg 981 (1086)
++.+ ..+..||+||....... ... +....+......+.++-.++|..+...-..........+++.+.|+.-
T Consensus 251 --l~~l--~~~~~ilvTsR~~~~~~--~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 251 --LKAF--DSQCQILLTTRDKSVTD--SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp --HHTT--CSSCEEEEEESCGGGGT--TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred --HHHh--cCCCeEEEECCCcHHHH--hcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 2222 23567778876543211 011 221112222467888889999887754211123357788999998764
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.38 E-value=6.1e-05 Score=81.35 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+....+..||++||+.+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts------------~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLS------------AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTS------------SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5556777778899999999884 3455556666666655433335678889987643
No 278
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.37 E-value=0.0003 Score=77.10 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
|+.++.-++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999999888643
No 279
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.37 E-value=0.00022 Score=80.94 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---------CCcEEEEeCCccccc--------cccc---------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGE--------------- 852 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---------~~~fi~v~~sel~~~--------~vGe--------------- 852 (1086)
|++...-++|+||||+|||++|..+|... +...+.++....+.. ..|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555558999999999999999998762 567778877553110 0010
Q ss_pred -cH---HHHHHHHHHHHh--cCCeEEEEecCchhhhhcCCCCCCCCccH--HHHHHHHHHHhccccCCCEEEEEecCCC
Q 001395 853 -SE---KAVRSLFAKARA--NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRP 923 (1086)
Q Consensus 853 -se---~~ir~lf~~A~~--~~p~ILflDEid~L~~~r~~~~~~~~~~~--~v~~~LL~~Ld~~~~~~~v~VI~aTN~p 923 (1086)
.+ ..+..+...++. ..+.+|+||.+..+........ .+..+ ..+.+++..|..+....++.||++.+-.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~--g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR--GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG--GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 11 112223344455 6788999999999875421100 11222 2366677777666555677777766543
No 280
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.37 E-value=0.00026 Score=80.46 Aligned_cols=111 Identities=19% Similarity=0.298 Sum_probs=68.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEccccccc-------------c---c----------ch---
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVS-------------Q---N----------YG--- 486 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s~l~s-------------~---~----------~G--- 486 (1086)
++.+.++..+.|.||+|+|||||.++||..... --+.+++.++.. . + ++
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 355678888999999999999999999986532 123444432210 0 0 00
Q ss_pred ---hhHHHHHHHHH--------------------------HhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHH
Q 001395 487 ---ESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 537 (1086)
Q Consensus 487 ---ese~~l~~vf~--------------------------~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~l 537 (1086)
...+++.++++ .|....|.+|++||. .+..+......+..+
T Consensus 100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP----------~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP----------LSALDPRTQENAREM 169 (348)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS----------STTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc----------cccCCHHHHHHHHHH
Confidence 00123333433 234457899999995 334456666677777
Q ss_pred hhccccCCCeeEEeccCCCCC
Q 001395 538 MDGVCRTDGVLVIAATNRPDS 558 (1086)
Q Consensus 538 Ld~l~~~~~viVIatTN~~d~ 558 (1086)
|..+....+..+|.+|+..+.
T Consensus 170 l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 170 LSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp HHHHHHHTTCEEEEEESCHHH
T ss_pred HHHHHHhcCCEEEEEeCCHHH
Confidence 776655546677778876543
No 281
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00022 Score=81.44 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=69.8
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCcccccc----cc-----------ccHHHHHHHHHH-HH
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSKW----VG-----------ESEKAVRSLFAK-AR 865 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel~~~~----vG-----------ese~~ir~lf~~-A~ 865 (1086)
|+++..-++|+|+||+|||++|..+|.. .+.+++.++..+-+... .| .....+..++.. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 3556666999999999999999998765 36678888875432110 01 112233334432 34
Q ss_pred hcCCeEEEEecCchhhhhcCCC---CCC-CCccHHHHHHHHHHHhccccCCCEEEEEecCC
Q 001395 866 ANAPSIIFFDEIDGLAAIRGKE---SDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 922 (1086)
Q Consensus 866 ~~~p~ILflDEid~L~~~r~~~---~~~-~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~ 922 (1086)
...+.+|+||.+..+....... ++. .+...+.+.+++..|.......++.||++.+.
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~ 199 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 199 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 5678899999999886422100 000 00122455666666665545557777766543
No 282
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.34 E-value=0.00052 Score=76.63 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=66.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEcccccccc----cch------------hhHHHHHHHHH
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQ----NYG------------ESEQALHEVFD 497 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l-----g~~~i~I~~s~l~s~----~~G------------ese~~l~~vf~ 497 (1086)
-|++++ -++++||||+|||+|+..++... +..++++++.+-... ..| ..++..-.+.+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 467777 68999999999999987555432 567788886543321 011 12222022223
Q ss_pred H---hhcCCCeEEEEccchhhccCCCCC---Cc-----hhHHHHHHHHHHHhhccccCCCeeEEeccC
Q 001395 498 S---ASQSAPAVVFIDELDAIAPARKDG---GE-----ELSQRMVATLLNLMDGVCRTDGVLVIAATN 554 (1086)
Q Consensus 498 ~---a~~~~P~ILfIDEiD~l~~~r~~~---~~-----~~~~rv~~~Ll~lLd~l~~~~~viVIatTN 554 (1086)
. +....|.+|+||-|..+.+...-. ++ -...|.+.+.+..|..+....++.+|.+-+
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 2 356689999999999998532211 11 023344555554444444456666665543
No 283
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.34 E-value=0.00026 Score=78.10 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3556788889999999999999999999865
No 284
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.33 E-value=0.00015 Score=82.78 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++||...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3567788889999999999999999999865
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.33 E-value=0.00012 Score=79.33 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ ..+......++..|..+. .+..||++||+++.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts------------~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATS------------ALDYESEHVIMRNMHKIC--KGRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCS------------CCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH
Confidence 4445666677899999999884 344555555665555542 26788999998654
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.33 E-value=6.1e-05 Score=79.94 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.9
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA 833 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~ 833 (1086)
...-+.|.||+|+|||||.++|++..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33448899999999999999998764
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.32 E-value=0.00014 Score=78.99 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCe-------EEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPS-------IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~-------ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+.+|....|. +|++||+.+ +.+......++..|..+... +..||++||+.+.
T Consensus 134 rv~lAraL~~~p~~~~~~~~lllLDEPts------------~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~ 195 (249)
T 2qi9_C 134 RVRLAAVVLQITPQANPAGQLLLLDEPMN------------SLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNH 195 (249)
T ss_dssp HHHHHHHHHHHCTTTCTTCCEEEESSTTT------------TCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCcCCCCCeEEEEECCcc------------cCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 4456666667799 999999884 34555666666666555333 6788999997654
No 288
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.30 E-value=0.0027 Score=76.79 Aligned_cols=168 Identities=12% Similarity=0.089 Sum_probs=92.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH-------cCCcEEEEccccc---
Q 001395 411 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD-------SGVNLFTVNGPEV--- 480 (1086)
Q Consensus 411 ~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~-------lg~~~i~I~~s~l--- 480 (1086)
..++|.+..++.|.+.+... -...+-++|+||+|+|||+||+.+++. ....++.++....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHH
T ss_pred CeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchH
Confidence 57899999999999887532 123456889999999999999988642 2122344332221
Q ss_pred --cccc------c----------hhhHHHHHHHHHH-hhc-CCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhc
Q 001395 481 --VSQN------Y----------GESEQALHEVFDS-ASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 540 (1086)
Q Consensus 481 --~s~~------~----------Gese~~l~~vf~~-a~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~ 540 (1086)
.... . ......+...+.. ... ..|.+|+||+++.. ..+ +.
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~l---~~ 253 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WVL---KA 253 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HHH---HT
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HHH---HH
Confidence 0000 0 0011112222222 222 26789999998642 111 22
Q ss_pred cccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCccccchHHHHHH
Q 001395 541 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 620 (1086)
Q Consensus 541 l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~~l~d~~l~~L 620 (1086)
+ ..+..||+||+...... ... ...+.+. .....+.++-.++|........ .........+
T Consensus 254 l--~~~~~ilvTsR~~~~~~-~~~-----~~~~~v~-----------~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i 313 (591)
T 1z6t_A 254 F--DSQCQILLTTRDKSVTD-SVM-----GPKYVVP-----------VESSLGKEKGLEILSLFVNMKK-ADLPEQAHSI 313 (591)
T ss_dssp T--CSSCEEEEEESCGGGGT-TCC-----SCEEEEE-----------CCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHH
T ss_pred h--cCCCeEEEECCCcHHHH-hcC-----CCceEee-----------cCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHH
Confidence 2 23556777776543211 111 1122330 0136788888899988765421 1124567888
Q ss_pred HHHcCCCc
Q 001395 621 SMATHGFV 628 (1086)
Q Consensus 621 a~~t~Gfs 628 (1086)
++.+.|..
T Consensus 314 ~~~~~G~P 321 (591)
T 1z6t_A 314 IKECKGSP 321 (591)
T ss_dssp HHHHTTCH
T ss_pred HHHhCCCc
Confidence 99998853
No 289
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.0007 Score=71.86 Aligned_cols=39 Identities=33% Similarity=0.380 Sum_probs=29.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 477 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~ 477 (1086)
.|++++..++|+||||+|||+++..++... +..++.++.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467888999999999999999988776532 455555543
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.29 E-value=0.0001 Score=80.59 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=27.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.++++..+.|.||+|+|||||+++++..+
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3567788999999999999999999999765
No 291
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.29 E-value=0.00024 Score=76.66 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+++ ..+.|.||+|+|||||+++++..+
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 355677 889999999999999999999865
No 292
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.29 E-value=7.5e-05 Score=86.22 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=27.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|||||||.++|+..+
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3667889999999999999999999999754
No 293
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.27 E-value=0.0023 Score=77.09 Aligned_cols=166 Identities=12% Similarity=0.038 Sum_probs=91.3
Q ss_pred CCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHH----HcCCcE---EEEcccccc-----
Q 001395 414 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAH----DSGVNL---FTVNGPEVV----- 481 (1086)
Q Consensus 414 ~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~----~lg~~~---i~I~~s~l~----- 481 (1086)
+|.+..++.|.+.+... +-...+.|.|+|+.|+||||||+.+++ ....+| +.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999999887432 112346688999999999999999996 333322 334333210
Q ss_pred ---cc---cch------------h-hHHHHHHHHHHhhcCC-CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhcc
Q 001395 482 ---SQ---NYG------------E-SEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 541 (1086)
Q Consensus 482 ---s~---~~G------------e-se~~l~~vf~~a~~~~-P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l 541 (1086)
.. ..+ + ....+...+....... +.+|+||+++... .+ .+. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~----~- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWA----Q- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHH----H-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--ccc----c-
Confidence 00 000 0 1112223333333343 7899999986531 11 111 1
Q ss_pred ccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCCCCHHHHHHHHHHHHccCcc-ccchHHHHHH
Q 001395 542 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAVPSPAQRLEILHALLSGMEH-SLLDSEVEYL 620 (1086)
Q Consensus 542 ~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~Pd~~eR~~IL~~~l~~~~~-~l~d~~l~~L 620 (1086)
..+..||.||+..... ... +..+..+.+ +..+.++-.++|..+....+. .........+
T Consensus 263 --~~gs~ilvTTR~~~v~-~~~---~~~~~~~~l--------------~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I 322 (549)
T 2a5y_B 263 --ELRLRCLVTTRDVEIS-NAA---SQTCEFIEV--------------TSLEIDECYDFLEAYGMPMPVGEKEEDVLNKT 322 (549)
T ss_dssp --HTTCEEEEEESBGGGG-GGC---CSCEEEEEC--------------CCCCHHHHHHHHHHTSCCCC--CHHHHHHHHH
T ss_pred --cCCCEEEEEcCCHHHH-HHc---CCCCeEEEC--------------CCCCHHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 1455677777653221 111 112345666 788889988988876433221 1112235566
Q ss_pred HHHcCCC
Q 001395 621 SMATHGF 627 (1086)
Q Consensus 621 a~~t~Gf 627 (1086)
++.+.|.
T Consensus 323 ~~~c~Gl 329 (549)
T 2a5y_B 323 IELSSGN 329 (549)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 7777764
No 294
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.27 E-value=6.9e-05 Score=85.47 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.+|++||..+- .+.....++...|..+....+..+|++||+.+.
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~------------LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSN------------LDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTT------------SCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHHHHHhCCCEEEEECCccc------------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 55677777888999999998752 223333444444443333336789999998654
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.26 E-value=0.00013 Score=80.59 Aligned_cols=56 Identities=27% Similarity=0.336 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEE--EEecCCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV--IAATNRPDKI 926 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~V--I~aTN~p~~l 926 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+... +..| |++||+.+.+
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts------------~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAA------------GLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGC
T ss_pred HHHHHHHHhCCCCEEEEeCCcc------------ccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHH
Confidence 4456677778899999999884 34455555555555544333 4456 8889987553
No 296
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.25 E-value=0.00017 Score=78.86 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||++||+.+ +.+......++..|..+... +..||++||+.+.
T Consensus 161 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTS------------ALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTT------------TSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCc------------cCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 3345666667899999999884 34555556666666554333 6788999997644
No 297
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.25 E-value=0.00061 Score=75.23 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=30.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVN 476 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~ 476 (1086)
+++.++.-++|.||||+|||||++.+|..+ |..++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 678899999999999999999999998764 43554443
No 298
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.25 E-value=0.00049 Score=75.32 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
|..+.+|....|.||++||+.+ +.+......++..|..+... +..||++||+++.+
T Consensus 146 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLV------------GLDREGKTDLLRIVEKWKTL-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTT
T ss_pred HHHHHHHHHcCCCEEEEcCccc------------cCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 4455666667899999999985 34556666666666655433 67899999988764
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.23 E-value=0.00017 Score=77.72 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+.+|....|.+|++||+.+ +.+......++..|..+.. .+..||++||+++.
T Consensus 147 rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSL------------GLAPILVSEVFEVIQKINQ-EGTTILLVEQNALG 201 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTT------------TCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcc------------cCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHH
Confidence 3345566667799999999884 3455566666666655533 36778889987643
No 300
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.23 E-value=0.0002 Score=78.19 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|..+++|....|.||++||+.+ ..+......++..|..+.. +..||++||+++.+ . ++|
T Consensus 163 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~~~-----~--~~d 221 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEATS------------SLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLSTI-----S--SAE 221 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECCCC------------TTCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGS-----T--TCS
T ss_pred HHHHHHHHHcCCCEEEEECccc------------cCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHH-----H--hCC
Confidence 3345566667799999999885 3344455555555554432 56889999986542 2 355
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 222 ~i~~l 226 (260)
T 2ghi_A 222 SIILL 226 (260)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.22 E-value=0.00054 Score=74.43 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=26.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
+.+.++..+.|.||+|+|||||.++++..+
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556788889999999999999999999865
No 302
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.22 E-value=0.00087 Score=73.37 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=26.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 467 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~ 467 (1086)
++.+.++..+.|.||+|+|||||+++++..
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356778899999999999999999999985
No 303
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.22 E-value=0.00034 Score=76.72 Aligned_cols=111 Identities=12% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHh--C-----------CcEEEEeCCcccccc------ccc--------------
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEA--G-----------LNFLAVKGPELFSKW------VGE-------------- 852 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~--~-----------~~fi~v~~sel~~~~------vGe-------------- 852 (1086)
+....-++|+||||+|||||++.++... + .+++.+...+-.... .|.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 4444558999999999999999998643 2 355566654421100 010
Q ss_pred -------------cHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEe
Q 001395 853 -------------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 919 (1086)
Q Consensus 853 -------------se~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~a 919 (1086)
+...++.+. +....|.+|+|||+..+... . ......+.+++..|..+....++.||++
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~i~--~l~~~~~livlDe~~~~~~~--d-----~~~~~~~~~~~~~L~~l~~~~g~tvi~i 177 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDGLK--RAAEGRRLMVLDTLRRFHIE--E-----ENASGPMAQVIGRMEAIAADTGCSIVFL 177 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHHHH--HHHTTCSEEEEECGGGGCCS--C-----TTCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred EEeecCCCCcccCCHHHHHHHH--HhcCCCCEEEECCHHHhcCC--C-----cCchHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 011122222 22236889999999986432 1 1123344555555555443447888888
Q ss_pred cCCCCC
Q 001395 920 TNRPDK 925 (1086)
Q Consensus 920 TN~p~~ 925 (1086)
+|....
T Consensus 178 ~H~~~~ 183 (279)
T 1nlf_A 178 HHASKG 183 (279)
T ss_dssp EEC---
T ss_pred ecCCCc
Confidence 876543
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.22 E-value=0.00051 Score=69.47 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 477 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~ 477 (1086)
+..|+|+|+||+||||+++.+++.++..++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 4568999999999999999999999988877554
No 305
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.20 E-value=0.00035 Score=78.29 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------------C----CcEEEEcccccc-cc----c---ch------
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------------G----VNLFTVNGPEVV-SQ----N---YG------ 486 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---------------g----~~~i~I~~s~l~-s~----~---~G------ 486 (1086)
|++++..++|+||||+|||++|..+|... | ..+++++...-. .. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 67888889999999999999999888642 2 466777655421 00 0 00
Q ss_pred ----------hhH---HHHHHHHHHhhc-CCCeEEEEccchhhccCCCCCCchh--HHHHHHHHHHHhhccccCCCeeEE
Q 001395 487 ----------ESE---QALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEEL--SQRMVATLLNLMDGVCRTDGVLVI 550 (1086)
Q Consensus 487 ----------ese---~~l~~vf~~a~~-~~P~ILfIDEiD~l~~~r~~~~~~~--~~rv~~~Ll~lLd~l~~~~~viVI 550 (1086)
..+ ..+..+.+.... ..+.+|+||.+..+......+..+. ....+.+++..|..+....++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 011 122223333444 5678999999998864211111111 123455555555555555566677
Q ss_pred ecc
Q 001395 551 AAT 553 (1086)
Q Consensus 551 atT 553 (1086)
++.
T Consensus 254 ~~n 256 (322)
T 2i1q_A 254 VTN 256 (322)
T ss_dssp EEE
T ss_pred EEC
Confidence 654
No 306
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.20 E-value=0.00053 Score=78.28 Aligned_cols=99 Identities=22% Similarity=0.375 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEccc-ccc---------cccchhhHHHHHHHHHHhhcCCCeEEE
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGP-EVV---------SQNYGESEQALHEVFDSASQSAPAVVF 508 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~s-~l~---------s~~~Gese~~l~~vf~~a~~~~P~ILf 508 (1086)
++..+++.||+|+||||+.+++++.+ +..++.+... ++. ....+.........+..+....|.||+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34568899999999999999998865 3444443211 111 111121112344567777888999999
Q ss_pred EccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCCCC
Q 001395 509 IDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 559 (1086)
Q Consensus 509 IDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d~i 559 (1086)
+||+- +......++.+. .. +..+|.+++..+.+
T Consensus 202 lDEp~-------------d~e~~~~~~~~~----~~-G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 202 VGEMR-------------DLETIRLALTAA----ET-GHLVFGTLHTTSAA 234 (356)
T ss_dssp ESCCC-------------SHHHHHHHHHHH----HT-TCEEEEEESCSSHH
T ss_pred cCCCC-------------CHHHHHHHHHHH----hc-CCEEEEEEccChHH
Confidence 99972 122333333332 12 45688888876543
No 307
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.20 E-value=0.0043 Score=81.16 Aligned_cols=168 Identities=11% Similarity=0.082 Sum_probs=97.3
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhHhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-------CCcEEEEccccccc
Q 001395 410 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-------GVNLFTVNGPEVVS 482 (1086)
Q Consensus 410 l~~I~Gl~~~~~~l~e~i~~~~~~~~~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~l-------g~~~i~I~~s~l~s 482 (1086)
...++|.+..+++|.+.+... -...+-+.|+|+.|+|||+||+.+++.. ...++.++.+....
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred CceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 357999999999999987433 0234568899999999999999887652 12234444332100
Q ss_pred c---------------------cchhhHHHHHHHHHHhhcCC--CeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhh
Q 001395 483 Q---------------------NYGESEQALHEVFDSASQSA--PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 539 (1086)
Q Consensus 483 ~---------------------~~Gese~~l~~vf~~a~~~~--P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd 539 (1086)
. ........+...+....... +.+|+||+++... .++
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~~ 252 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VLK 252 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HHT
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HHH
Confidence 0 00111222333333333333 7899999987431 122
Q ss_pred ccccCCCeeEEeccCCCCCCCccccCCCCcceeeehhhhhhhhhcccCCCCC-CCHHHHHHHHHHHHccCccccchHHHH
Q 001395 540 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIDMSFLFSLLKNSPAAV-PSPAQRLEILHALLSGMEHSLLDSEVE 618 (1086)
Q Consensus 540 ~l~~~~~viVIatTN~~d~idpaL~r~GRfdr~I~i~l~~~~~~~~~v~~~~-Pd~~eR~~IL~~~l~~~~~~l~d~~l~ 618 (1086)
.+ ..+..||.||+...-..... .....+.+ +. .+.++-.++|.......... ......
T Consensus 253 ~~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~--------------~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~ 311 (1249)
T 3sfz_A 253 AF--DNQCQILLTTRDKSVTDSVM----GPKHVVPV--------------ESGLGREKGLEILSLFVNMKKED-LPAEAH 311 (1249)
T ss_dssp TT--CSSCEEEEEESSTTTTTTCC----SCBCCEEC--------------CSSCCHHHHHHHHHHHHTSCSTT-CCTHHH
T ss_pred hh--cCCCEEEEEcCCHHHHHhhc----CCceEEEe--------------cCCCCHHHHHHHHHHhhCCChhh-CcHHHH
Confidence 22 23456777887654322111 12234444 54 78888888988776433222 234577
Q ss_pred HHHHHcCCCc
Q 001395 619 YLSMATHGFV 628 (1086)
Q Consensus 619 ~La~~t~Gfs 628 (1086)
.+++.+.|.-
T Consensus 312 ~i~~~~~glP 321 (1249)
T 3sfz_A 312 SIIKECKGSP 321 (1249)
T ss_dssp HHHHHTTTCH
T ss_pred HHHHHhCCCH
Confidence 8888888753
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.19 E-value=0.00091 Score=73.17 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3567788899999999999999999999765
No 309
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.19 E-value=0.00055 Score=74.37 Aligned_cols=56 Identities=29% Similarity=0.318 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+....+..||++||+.+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTS------------ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSST------------TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 5556777778899999999985 3455566666666655543336788999987644
No 310
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.18 E-value=0.00054 Score=74.83 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567788889999999999999999999865
No 311
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.17 E-value=0.0027 Score=83.05 Aligned_cols=170 Identities=9% Similarity=0.081 Sum_probs=102.1
Q ss_pred cccccccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHHHh-------CCcEEEEeCCcc
Q 001395 773 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GLNFLAVKGPEL 845 (1086)
Q Consensus 773 ~~~di~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~~~-------~~~fi~v~~sel 845 (1086)
.-..++|.+...++|.+.+... -...+-+.|+|+.|+|||+||+.+++.. ...++.++.+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 3456899999999988887421 1123448899999999999999887541 122334443321
Q ss_pred cc---------------------ccccccHHHHHHHHHHHHhcC--CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHH
Q 001395 846 FS---------------------KWVGESEKAVRSLFAKARANA--PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 902 (1086)
Q Consensus 846 ~~---------------------~~vGese~~ir~lf~~A~~~~--p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL 902 (1086)
.. .........+...+....... +.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 00 001112233444444444444 7899999998421
Q ss_pred HHHhccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCC-CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHcCCCcH
Q 001395 903 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP-PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTG 981 (1086)
Q Consensus 903 ~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~-P~~~eR~~Il~~~l~~~~l~~d~~l~~La~~t~g~sg 981 (1086)
.++.+ ..+..||+||........ +. .-...+.++. .+.++-.++|..+.............++++.+.|..-
T Consensus 250 -~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 250 -VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp -HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred -HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 12222 235678888876644211 11 1234667775 8888889999887754333333447789999998763
No 312
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.16 E-value=0.0012 Score=70.94 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567788999999999999999999999765
No 313
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.00022 Score=74.04 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=30.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
+.+.+++.|+|.||||+||||+++.+|+.+|..++..+
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 44567788999999999999999999999998887554
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.15 E-value=0.00058 Score=74.82 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||++||+.+ +.+......++..|..+.. .+..||++||+++.
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts------------~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~ 226 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDS------------GLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTT------------TCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGG
T ss_pred HHHHHHHHHhCCCEEEEeCCCC------------CCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHH
Confidence 3445555566799999999984 4566677777777776643 36789999998754
No 315
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.14 E-value=0.00086 Score=74.89 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=67.9
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh-----CCcEEEEeCCccccc----cccc-----------cHHHH-HHHHHH
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSK----WVGE-----------SEKAV-RSLFAK 863 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~-----~~~fi~v~~sel~~~----~vGe-----------se~~i-r~lf~~ 863 (1086)
|+++. -++++||||+|||+|+-.++... +...+.++..+-+.. -.|- ....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34444 47899999999999988775432 677888887653221 1111 11122 222222
Q ss_pred ---HHhcCCeEEEEecCchhhhhcCCC---CCC-CC--ccHHHHHHHHHHHhccccCCCEEEEEecC
Q 001395 864 ---ARANAPSIIFFDEIDGLAAIRGKE---SDG-VS--VSDRVMSQLLVELDGLHQRVNVTVIAATN 921 (1086)
Q Consensus 864 ---A~~~~p~ILflDEid~L~~~r~~~---~~~-~~--~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN 921 (1086)
++...|.+|++|-|.++.+...-. ++. .+ ...|.+++.|..|.......++.||++-+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 355689999999999997532111 110 01 23466777777766555566777777543
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.14 E-value=0.00054 Score=74.27 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=36.6
Q ss_pred HHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 860 LFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 860 lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
.+.+|....|.+|++||+.+ +.+......++..|..+.. .+..||++||+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts------------~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDS------------GLDIDALKVVARGVNAMRG-PNFGALVITHYQRI 205 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGG------------TTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG
T ss_pred HHHHHHHcCCCEEEEeCCCc------------CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence 45555566799999999985 3455556666666655533 36789999998754
No 317
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.13 E-value=0.00094 Score=71.77 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHh---ccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD---GLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld---~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||++||+.+ ..+......++..+. ... .+..||++||+.+.
T Consensus 135 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~ 191 (237)
T 2cbz_A 135 RVSLARAVYSNADIYLFDDPLS------------AVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY 191 (237)
T ss_dssp HHHHHHHHHHCCSEEEEESTTT------------TSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT
T ss_pred HHHHHHHHhcCCCEEEEeCccc------------ccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH
Confidence 5566777778899999999884 445666677777773 222 36789999998765
No 318
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00013 Score=78.58 Aligned_cols=30 Identities=30% Similarity=0.232 Sum_probs=26.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
+.+.++..+.|.||+|+|||||.++++..+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556788889999999999999999999765
No 319
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.11 E-value=0.00083 Score=80.80 Aligned_cols=57 Identities=5% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 857 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 857 ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
-|..+++|....|.||++||+.+ +.+......++..|..+....+..||++||+.+.
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~------------gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSS------------YLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 37778888899999999999884 3455555566666655544457788999987654
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.11 E-value=0.0011 Score=72.49 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=26.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+. +..+.|.||+|+|||||.++++..+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677 8889999999999999999999875
No 321
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.10 E-value=0.00013 Score=79.12 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=27.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||.++++..+
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3556788889999999999999999999865
No 322
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.08 E-value=0.0005 Score=83.60 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|-.+++|....|.||++||+.+ ..+......+.+.+..... +..+|.+||+++. .+ .+|
T Consensus 488 r~~iAral~~~p~illlDEpts------------~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~-----~~--~~d 546 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEATS------------ALDTESERAIQAALDELQK--NKTVLVIAHRLST-----IE--QAD 546 (582)
T ss_pred HHHHHHHHHcCCCEEEEECccc------------cCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHH-----HH--hCC
Confidence 4446666667899999999985 3344444455555554432 6688889998653 23 356
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 547 ~i~~l 551 (582)
T 3b5x_A 547 EILVV 551 (582)
T ss_pred EEEEE
Confidence 66655
No 323
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.08 E-value=0.00051 Score=72.83 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=26.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
+.+.++..+.|.||+|+|||||+++++..+
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 556788889999999999999999999865
No 324
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.07 E-value=0.00017 Score=88.03 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
++.++++..+.|.||+|+|||||++++++.+.
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 46688999999999999999999999998663
No 325
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.06 E-value=0.00097 Score=73.59 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=62.1
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCCc----cccc----------------------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPE----LFSK---------------------------- 848 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~se----l~~~---------------------------- 848 (1086)
++.+..-++|.||||+||||+++.+|... |.+++.++... +..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 110 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 45555668999999999999999998763 44565554321 0000
Q ss_pred -----------cc----c-ccHHHHH-HHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccH-HHHHHHHHHHhcccc
Q 001395 849 -----------WV----G-ESEKAVR-SLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-RVMSQLLVELDGLHQ 910 (1086)
Q Consensus 849 -----------~v----G-ese~~ir-~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~-~v~~~LL~~Ld~~~~ 910 (1086)
++ + .+...++ .+.+.+....|.+|+|||+..+.... . .... ..+..++..|..+..
T Consensus 111 ~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~-~-----~~d~~~~~~~i~~~L~~la~ 184 (296)
T 1cr0_A 111 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS-G-----ESDERKMIDNLMTKLKGFAK 184 (296)
T ss_dssp HHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC-C-----CCCHHHHHHHHHHHHHHHHH
Confidence 00 0 1111222 22233356789999999999864210 0 0111 344555555554444
Q ss_pred CCCEEEEEecCCC
Q 001395 911 RVNVTVIAATNRP 923 (1086)
Q Consensus 911 ~~~v~VI~aTN~p 923 (1086)
..++.||++||..
T Consensus 185 ~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 185 STGVVLVVICHLK 197 (296)
T ss_dssp HHCCEEEEEEECC
T ss_pred HhCCeEEEEEecC
Confidence 4477888888764
No 326
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.06 E-value=0.0011 Score=76.19 Aligned_cols=73 Identities=23% Similarity=0.416 Sum_probs=47.3
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCC-cc-ccc---cccc-----cHHHHHHHHHHHHhcCCeE
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGP-EL-FSK---WVGE-----SEKAVRSLFAKARANAPSI 871 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~s-el-~~~---~vGe-----se~~ir~lf~~A~~~~p~I 871 (1086)
..+...++|.||+|+||||+++++++.. ...++.+..+ ++ ... ++.+ .....+..++.+....|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 3444458999999999999999998764 2344444321 11 000 1111 2223466777777789999
Q ss_pred EEEecCc
Q 001395 872 IFFDEID 878 (1086)
Q Consensus 872 LflDEid 878 (1086)
|++||+.
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999985
No 327
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.05 E-value=0.0011 Score=78.05 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=31.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 477 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~ 477 (1086)
.|+.++.-++|.|+||+|||+++..+|..+ |.+++.++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 478899999999999999999999887643 556666553
No 328
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.04 E-value=0.00051 Score=77.57 Aligned_cols=96 Identities=9% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhC--CcEEEEeCCcccc-----c---cccccHHHHHHHHHHHHhcCCeEEEEecCc
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFS-----K---WVGESEKAVRSLFAKARANAPSIIFFDEID 878 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~--~~fi~v~~sel~~-----~---~vGese~~ir~lf~~A~~~~p~ILflDEid 878 (1086)
...++|.||+|+||||++++|+.... ...+.+.+...+. . ++.......+..++.|....|.+|++||+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 45699999999999999999998753 3456666543211 1 120023355778888888999999999987
Q ss_pred hhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 879 GLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 879 ~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
+ ..+. +++..+. .++..+|++||+.+
T Consensus 251 ~---------------~e~~-~~l~~~~----~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 251 S---------------SEAY-DFYNVLC----SGHKGTLTTLHAGS 276 (330)
T ss_dssp S---------------THHH-HHHHHHH----TTCCCEEEEEECSS
T ss_pred h---------------HHHH-HHHHHHh----cCCCEEEEEEcccH
Confidence 3 1222 2444443 22445788888765
No 329
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.03 E-value=0.0006 Score=83.01 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|-.+++|....|.||++||+.+ ..+......+.+.+.... .+..+|.+||+++. .+ .+|
T Consensus 487 rv~lARal~~~p~illlDEpts------------~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~-----~~--~~d 545 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTS------------SVDPITEKRILDGLKRYT--KGCTTFIITQKIPT-----AL--LAD 545 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCT------------TSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHH-----HT--TSS
T ss_pred HHHHHHHHHcCCCEEEEECCcc------------cCCHHHHHHHHHHHHHhC--CCCEEEEEecChHH-----HH--hCC
Confidence 5566777778899999999985 334444455555555442 36788999998743 33 456
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 546 ~i~vl 550 (587)
T 3qf4_A 546 KILVL 550 (587)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66555
No 330
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.03 E-value=0.00017 Score=87.70 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
++.++++..+.|.||+|+|||||++++++.+.
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 35678899999999999999999999998663
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.0011 Score=72.41 Aligned_cols=52 Identities=19% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ ..+......++..|..... .||++||+++.
T Consensus 136 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~l~~~L~~~~~----tviivtHd~~~ 187 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFE------------NVDAARRHVISRYIKEYGK----EGILVTHELDM 187 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTT------------TCCHHHHHHHHHHHHHSCS----EEEEEESCGGG
T ss_pred HHHHHHHHHhCCCEEEEECCcc------------ccCHHHHHHHHHHHHHhcC----cEEEEEcCHHH
Confidence 4556666777899999999884 4456666667777765432 88899998754
No 332
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.00068 Score=82.70 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|-.+++|....|.||++||+.+ ..+......+.+.+.... .+..+|.+||+++.+ + .+|
T Consensus 499 rv~iAral~~~p~illlDEpts------------~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-----~--~~d 557 (598)
T 3qf4_B 499 LLAITRAFLANPKILILDEATS------------NVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTI-----K--NAD 557 (598)
T ss_dssp HHHHHHHHHTCCSEEEECCCCT------------TCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHH-----H--HCS
T ss_pred HHHHHHHHhcCCCEEEEECCcc------------CCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH-----H--cCC
Confidence 5567777788999999999985 234444444444444432 267889999987642 2 355
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 558 ~i~~l 562 (598)
T 3qf4_B 558 LIIVL 562 (598)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55555
No 333
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.00035 Score=80.63 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
|..+++|....|.||+|||..+ ..+.....++...|.... .+..+|++||+.+
T Consensus 163 RvalARAL~~~P~lLLLDEPts------------~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e 215 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSA------------HLDPVTYQIIRRTLKQAF--ADCTVILCEARIE 215 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHH------------HSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG
T ss_pred HHHHHHHHhcCCCEEEEeCCcc------------CCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH
Confidence 5567778888999999999875 334556666666776543 3578889999864
No 334
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.01 E-value=0.00031 Score=85.40 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=27.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.++++..+.|.||+|+|||||++.+++.+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567889999999999999999999999865
No 335
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.01 E-value=0.00097 Score=84.66 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCCcceeCCCCCcchHHHHHHHHH-----hCCc----EEEEe----------CCccccccccccHHHHHHHHHHHH-hcC
Q 001395 809 PTGILMFGPPGCSKTLMARAVASE-----AGLN----FLAVK----------GPELFSKWVGESEKAVRSLFAKAR-ANA 868 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~-----~~~~----fi~v~----------~sel~~~~vGese~~ir~lf~~A~-~~~ 868 (1086)
..-++|.||+|+||||+.|.++.. .+.. ...+. ..+.............+++...++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 344899999999999999998743 2211 11111 111111111112222333333322 567
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCC
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 927 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD 927 (1086)
|.+|+|||+.+-.. ......+...++..+. ...+..||++||..+...
T Consensus 753 p~LlLLDEP~~GlD--------~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRGTS--------THDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTTSC--------HHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHH
Confidence 99999999874210 0011122334444442 234788999999977654
No 336
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.01 E-value=0.00019 Score=87.24 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
++.++++..+.|.||+|+|||||++++++.+.
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35678899999999999999999999998763
No 337
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.00 E-value=0.0023 Score=74.77 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=101.8
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcc-------------------cccccc-ccHHHHHHHHHHHH
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL-------------------FSKWVG-ESEKAVRSLFAKAR 865 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel-------------------~~~~vG-ese~~ir~lf~~A~ 865 (1086)
|.-+++.|++|+||||++..||..+ |..+..+.+.-+ +....+ .....++..++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999998654 666666665322 111111 22334567778888
Q ss_pred hcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEE-EEEecCCCCCCCh--hhhCCCCcceEeec
Q 001395 866 ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT-VIAATNRPDKIDP--ALLRPGRFDRLLYV 942 (1086)
Q Consensus 866 ~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~-VI~aTN~p~~lD~--aLlrpgRFd~~I~~ 942 (1086)
.....++++|.+..+ ........++-....-.. .+.++ |+-++...+.++. ++.....++- +-+
T Consensus 180 ~~~~DvVIIDTaGrl-----------~~d~~lm~el~~i~~~~~-pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~g-VIl 246 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRH-----------KEDKALIEEMKQISNVIH-PHEVILVIDGTIGQQAYNQALAFKEATPIGS-IIV 246 (443)
T ss_dssp HTTCSEEEEECCCCS-----------SCCHHHHHHHHHHHHHHC-CSEEEEEEEGGGGGGHHHHHHHHHHSCTTEE-EEE
T ss_pred hCCCCEEEEECCCcc-----------cchHHHHHHHHHHHHhhc-CceEEEEEeCCCchhHHHHHHHHHhhCCCeE-EEE
Confidence 777889999988643 123344444433322222 23344 4444432222111 1111112221 223
Q ss_pred CCCCHHHHHHHHHHHH--hcCCCC-----------CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH--------HHHhcC
Q 001395 943 GPPNETDREEIFRIHL--RKIPCS-----------SDVNIRELACLSEGCTGADISLICREAAISA--------IEENLD 1001 (1086)
Q Consensus 943 ~~P~~~eR~~Il~~~l--~~~~l~-----------~d~~l~~La~~t~g~sgadl~~l~~~A~~~A--------~~~~~~ 1001 (1086)
..-|...+...+.... .+.|+. ...+.+.++...-|+ .|+..++++|.... ..+.+.
T Consensus 247 TKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~~k~~ 324 (443)
T 3dm5_A 247 TKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKELEKEVEIKEEDIERFL 324 (443)
T ss_dssp ECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 3344433322221111 122211 234467777776552 37777776553311 222333
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 001395 1002 ASRITMQHLKTAIRHVQP 1019 (1086)
Q Consensus 1002 ~~~It~~d~~~al~~~~p 1019 (1086)
....|.+||.+.++.++.
T Consensus 325 ~~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 325 RGKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp TTCCCHHHHHHHHHHHHT
T ss_pred hCCcCHHHHHHHHHHHHh
Confidence 456999999988877543
No 338
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.97 E-value=0.00061 Score=76.33 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=69.0
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---------------C----CcEEEEeCCccccc--------cccc-----
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---------------G----LNFLAVKGPELFSK--------WVGE----- 852 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---------------~----~~fi~v~~sel~~~--------~vGe----- 852 (1086)
|+++..-++|+||||+|||++|..+|... | .+++.++..+-+.. -.|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45555558999999999999999998652 2 56777776553110 0010
Q ss_pred ----------c-HH---HHHHHHHHHHh-cCCeEEEEecCchhhhhcCCCCCCCCccH--HHHHHHHHHHhccccCCCEE
Q 001395 853 ----------S-EK---AVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVT 915 (1086)
Q Consensus 853 ----------s-e~---~ir~lf~~A~~-~~p~ILflDEid~L~~~r~~~~~~~~~~~--~v~~~LL~~Ld~~~~~~~v~ 915 (1086)
. +. .+..+...++. ..+.+|+||.+..+........ ....+ ..+.+++..|..+....++.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~--~~~~~r~~~~~~~~~~L~~la~~~~~~ 251 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR--GKLAERQQKLGRHMATLNKLADLFNCV 251 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT--TSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 0 11 12233344444 6688999999999875321110 11122 34667777776665566777
Q ss_pred EEEecC
Q 001395 916 VIAATN 921 (1086)
Q Consensus 916 VI~aTN 921 (1086)
||++.+
T Consensus 252 vi~~nq 257 (322)
T 2i1q_A 252 VLVTNQ 257 (322)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 777643
No 339
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.96 E-value=0.00027 Score=72.98 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I 475 (1086)
+.-++++||+|+||||++..++..+ |..++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4567899999999999986555443 5554433
No 340
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.96 E-value=0.00044 Score=70.49 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
++.|+|+|||||||||+++.+|+.+|.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 567999999999999999999999999887654
No 341
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.95 E-value=0.00028 Score=85.75 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.++++..+.|.||+|+|||||++.+++.+
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4567889999999999999999999999866
No 342
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.00017 Score=74.56 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=22.1
Q ss_pred cceeCCCCCcchHHHHHHHHH---hCCcEEEEe
Q 001395 812 ILMFGPPGCSKTLMARAVASE---AGLNFLAVK 841 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~---~~~~fi~v~ 841 (1086)
++++||+|+||||++..++.. .+...+.+.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999998666544 355555443
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.92 E-value=0.00049 Score=70.35 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 001395 441 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 474 (1086)
Q Consensus 441 i~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~ 474 (1086)
+..+..|+|.|+||+||||+++.+++.++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4566789999999999999999999999887765
No 344
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.0012 Score=70.08 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCC
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGP 843 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~s 843 (1086)
|+++..-++|+||||+|||++|..+|.. .+.+.+.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4555566899999999999999887653 35566666553
No 345
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.00039 Score=78.58 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEccccccc-----c---cchhhHHHHHHHHHHhhcCCCeEEEEcc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVS-----Q---NYGESEQALHEVFDSASQSAPAVVFIDE 511 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~--~~i~I~~s~l~s-----~---~~Gese~~l~~vf~~a~~~~P~ILfIDE 511 (1086)
.++..++|.||+|+||||++++++..+.. ..+.+++..... . ++.......+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 45678999999999999999999987642 456666543211 1 1200112335556677788999999999
Q ss_pred ch
Q 001395 512 LD 513 (1086)
Q Consensus 512 iD 513 (1086)
+-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 346
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.88 E-value=0.0019 Score=69.76 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccc
Q 001395 441 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 480 (1086)
Q Consensus 441 i~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l 480 (1086)
...+..++|.|+||+||||+++.+++.++..++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4456778999999999999999999999866677777655
No 347
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.87 E-value=0.00054 Score=70.10 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccc
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 480 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l 480 (1086)
++.++..++|.||||+||||+++.+++.++...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 45677889999999999999999999987777777776554
No 348
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.85 E-value=0.00093 Score=67.50 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEEEeC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 842 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~ 842 (1086)
.-++|.|+||+||||+|++|+..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458899999999999999999999998887654
No 349
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.85 E-value=0.0026 Score=68.87 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=26.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHD 467 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~ 467 (1086)
+.+.++..+.|.||+|+|||||+++++..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55678888999999999999999999985
No 350
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.83 E-value=0.0035 Score=66.74 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccc-------cccccchhh-H----HHHHHHHHHhhc----CC
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPE-------VVSQNYGES-E----QALHEVFDSASQ----SA 503 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~-------l~s~~~Ges-e----~~l~~vf~~a~~----~~ 503 (1086)
++.-++++||+|+||||++..++..+ |..++.++... +.+. .|-. + .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 35567788999999999988777655 55565553211 2111 1210 0 011234444433 35
Q ss_pred CeEEEEccchhh
Q 001395 504 PAVVFIDELDAI 515 (1086)
Q Consensus 504 P~ILfIDEiD~l 515 (1086)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999765
No 351
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.82 E-value=0.0094 Score=71.74 Aligned_cols=166 Identities=10% Similarity=0.149 Sum_probs=94.6
Q ss_pred ccchhHHHHHHHHHhcchhcHHHHHhhCCCCCCCcceeCCCCCcchHHHHHHHH----HhCCcE---EEEeCCccc----
Q 001395 778 GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS----EAGLNF---LAVKGPELF---- 846 (1086)
Q Consensus 778 ~G~e~vk~~L~e~i~~~l~~~~~~~~lg~~~~~gvLL~GPpGTGKTtLAkalA~----~~~~~f---i~v~~sel~---- 846 (1086)
+|.+..+++|.+.+... +....+-+.|+|+.|+|||+||+.+++ .....| +.++.++-.
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 48888888888877421 112234588999999999999999996 222222 223333210
Q ss_pred ----cc---ccc-------------ccHHHHHHHHHHHHhcC-CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHH
Q 001395 847 ----SK---WVG-------------ESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 905 (1086)
Q Consensus 847 ----~~---~vG-------------ese~~ir~lf~~A~~~~-p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~L 905 (1086)
.. .++ .....+...+....... +.+|+||+++.. ..+ .+. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~--------------~~~--~~~-~- 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--------------ETI--RWA-Q- 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--------------HHH--HHH-H-
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc--------------hhh--ccc-c-
Confidence 00 000 01122344555555554 889999999842 111 111 1
Q ss_pred hccccCCCEEEEEecCCCCCCChhhhCCCCcceEeecCCCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHcCCCc
Q 001395 906 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD--VNIRELACLSEGCT 980 (1086)
Q Consensus 906 d~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd~~I~~~~P~~~eR~~Il~~~l~~~~l~~d--~~l~~La~~t~g~s 980 (1086)
..+..||+||..... +.. .+..+..+.++..+.++-.++|..+....+...+ ....++++.+.|..
T Consensus 263 -----~~gs~ilvTTR~~~v---~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 263 -----ELRLRCLVTTRDVEI---SNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp -----HTTCEEEEEESBGGG---GGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred -----cCCCEEEEEcCCHHH---HHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 136678888865432 111 1113357889999999999999887433221111 12456677777755
No 352
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.82 E-value=0.0003 Score=75.88 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHH
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASE 832 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~ 832 (1086)
+..-+.|.||+|+|||||.++|++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3334889999999999999999875
No 353
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.0024 Score=76.79 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||+|||+.+ ..+......++..|..+.. +..||++||+.+.
T Consensus 146 rv~iA~aL~~~p~illlDEPts------------~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~ 199 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSS------------YLDVRERMNMAKAIRELLK--NKYVIVVDHDLIV 199 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcc------------cCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHH
Confidence 6667788889999999999985 3455555666666665543 6788999998754
No 354
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.0018 Score=67.12 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.7
Q ss_pred CcceeCCCCCcchHHHHHHHHHh
Q 001395 811 GILMFGPPGCSKTLMARAVASEA 833 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~ 833 (1086)
-+.|.||+|+||||+++.|+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999875
No 355
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=96.80 E-value=0.0012 Score=69.71 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=48.9
Q ss_pred HHHHHHHhhhc--CCeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEEcC
Q 001395 303 LLQTCAASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYP 378 (1086)
Q Consensus 303 ~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~ 378 (1086)
+...+++++|. ||||..||.|.|++.+..+.|.|++++|. ++++|+++|.|.+..
T Consensus 133 ~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~---------------------g~viV~~~T~I~~~~ 189 (211)
T 3qwz_A 133 LFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS---------------------PYCIVAPDTVIHCEG 189 (211)
T ss_dssp HHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS---------------------SEEEECTTCEEECCS
T ss_pred hHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC---------------------CCEEECCCcEEEEcC
Confidence 44577788886 79999999999999999999999999997 789999999999854
No 356
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.79 E-value=0.00053 Score=83.28 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|-.+++|....|.||++||+.+ ..+......+.+.+..... +..+|.+||+++.+ + .+|
T Consensus 485 rv~lAral~~~p~illlDEpts------------~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~-----~--~~d 543 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATS------------ALDLESESIIQEALDVLSK--DRTTLIVAHRLSTI-----T--HAD 543 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGT-----T--TCS
T ss_pred HHHHHHHHHcCCCEEEEECccc------------cCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHH-----H--cCC
Confidence 4556677778899999999885 2333344444444443322 45788899987643 3 356
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 544 ~i~~l 548 (578)
T 4a82_A 544 KIVVI 548 (578)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 357
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.79 E-value=0.0026 Score=67.94 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHH-hccccCCCEEEEEecCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL-DGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~L-d~~~~~~~v~VI~aTN~p~ 924 (1086)
|..+++|....|.+|++||+.+ +.+......++..+ .... .+..||++||+++
T Consensus 138 rv~lAral~~~p~lllLDEPts------------~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~ 191 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFG------------YLDVLTEKEIFESCVCKLM--ANKTRILVTSKME 191 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTT------------TSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH
T ss_pred HHHHHHHHhcCCCEEEEECccc------------CCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH
Confidence 5566777778899999999884 44556666666653 4442 2568899998764
No 358
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.76 E-value=0.00077 Score=81.94 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
|-.+++|....|.||++||+.+ ..+......+.+.+..... +..+|.+||+++.+ + .+|
T Consensus 488 rl~iAral~~~p~illlDEpts------------~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-----~--~~d 546 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATS------------ALDTESERAIQAALDELQK--NRTSLVIAHRLSTI-----E--QAD 546 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTS------------SCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT-----T--TCS
T ss_pred HHHHHHHHHhCCCEEEEECccc------------cCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHH-----H--hCC
Confidence 4446666667899999999984 3344444455555554432 56888999987542 3 356
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
+++.+
T Consensus 547 ~i~~l 551 (582)
T 3b60_A 547 EIVVV 551 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66655
No 359
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.76 E-value=0.00089 Score=68.00 Aligned_cols=34 Identities=38% Similarity=0.607 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
..+..|+|+|+||+||||+++.+++.++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4567799999999999999999999998877654
No 360
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.002 Score=68.36 Aligned_cols=38 Identities=34% Similarity=0.335 Sum_probs=28.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVN 476 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~----lg~~~i~I~ 476 (1086)
-|++++.-++|+|+||+|||++|..+|.. .+..++.++
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 36888999999999999999999765532 255555554
No 361
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.74 E-value=0.00081 Score=68.91 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHH-cCCcEEEE
Q 001395 441 LRPTKGVLLHGPPGTGKTSLARLCAHD-SGVNLFTV 475 (1086)
Q Consensus 441 i~~~~~vLL~GPpGTGKTtLAralA~~-lg~~~i~I 475 (1086)
...+..|+|+|+|||||||+++.+++. +|.+++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 345667999999999999999999999 67666644
No 362
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.73 E-value=0.0038 Score=75.12 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||++||+.+ ..+......++..|..+.. .+..||++||+.+.
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs------------~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~ 220 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSS------------YLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAV 220 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTT------------TCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEECCcc------------cCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence 6677888889999999999884 3455556666666665543 37788999987653
No 363
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.72 E-value=0.0008 Score=73.45 Aligned_cols=71 Identities=20% Similarity=0.403 Sum_probs=44.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEccccc---c--------cccchhhHHHHHHHHHHhhcCCCe
Q 001395 441 LRPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGPEV---V--------SQNYGESEQALHEVFDSASQSAPA 505 (1086)
Q Consensus 441 i~~~~~vLL~GPpGTGKTtLAralA~~lg----~~~i~I~~s~l---~--------s~~~Gese~~l~~vf~~a~~~~P~ 505 (1086)
+.++..++|.||+|+||||+++++++.+. ..++ +++..+ . ...+|.....++..+..+....|.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ 100 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 100 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 56777899999999999999999998652 2332 222111 0 001111112234455566666899
Q ss_pred EEEEccc
Q 001395 506 VVFIDEL 512 (1086)
Q Consensus 506 ILfIDEi 512 (1086)
+|++||.
T Consensus 101 illlDEp 107 (261)
T 2eyu_A 101 VIFVGEM 107 (261)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 9999996
No 364
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.71 E-value=0.0029 Score=67.45 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=42.7
Q ss_pred cceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCc-------ccccccccc-----HHHHHHHHHHHHh----cCCeEE
Q 001395 812 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE-------LFSKWVGES-----EKAVRSLFAKARA----NAPSII 872 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~se-------l~~~~vGes-----e~~ir~lf~~A~~----~~p~IL 872 (1086)
++++||+|+||||++..++..+ +..++.++... +.++ .|-. .....++++.++. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 7788999999999998887654 56666664322 2111 1211 0112345555554 357899
Q ss_pred EEecCchh
Q 001395 873 FFDEIDGL 880 (1086)
Q Consensus 873 flDEid~L 880 (1086)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999854
No 365
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.70 E-value=0.001 Score=74.69 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=31.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccc
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 480 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l 480 (1086)
+.++|+||+|+|||+|++.+|+.++..++.++.-.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 468899999999999999999999988888875443
No 366
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.68 E-value=0.0011 Score=80.53 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I 475 (1086)
...+++.||||||||+++++++..+ +..++.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4578899999999999999988754 5555544
No 367
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.0018 Score=67.12 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=21.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
..+.|.||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999876
No 368
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.66 E-value=0.0043 Score=72.75 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=31.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 477 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~ 477 (1086)
.|+.++.-++|.|+||+|||++|..+|... |.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 478899999999999999999999877643 456666554
No 369
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.00089 Score=69.48 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=29.5
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEe
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 841 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~ 841 (1086)
.+...++|.||||+||||++++||..++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 34456999999999999999999999999887543
No 370
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.64 E-value=0.0012 Score=66.02 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
.|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998886554
No 371
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.0013 Score=66.18 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 473 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i 473 (1086)
+..++|.||||+||||+++.+|+.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456999999999999999999999987554
No 372
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.62 E-value=0.0028 Score=80.43 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHH
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAH 466 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~ 466 (1086)
.+.++..++|.||.|+||||+.|.++.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 345677899999999999999998874
No 373
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.61 E-value=0.0026 Score=81.01 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=54.3
Q ss_pred CCcceeCCCCCcchHHHHHHHHH-----hCCcE----EEEeCC-ccccc---------cccccHHHHHHHHHHH-HhcCC
Q 001395 810 TGILMFGPPGCSKTLMARAVASE-----AGLNF----LAVKGP-ELFSK---------WVGESEKAVRSLFAKA-RANAP 869 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~-----~~~~f----i~v~~s-el~~~---------~vGese~~ir~lf~~A-~~~~p 869 (1086)
.-++|.||+|+||||+.|.+|.. .|..+ ..+..- .++.. ..........++...+ ....|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 34889999999999999998532 23211 111111 11111 1111111222222222 25678
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
.+|+|||+.+-. + ......+...++..+. ...+..+|++||..+..
T Consensus 743 sLlLLDEp~~Gl-----D---~~~~~~i~~~il~~l~---~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 743 SLIIIDELGRGT-----S---TYDGFGLAWAISEYIA---TKIGAFCMFATHFHELT 788 (934)
T ss_dssp CEEEEESCSCSS-----C---HHHHHHHHHHHHHHHH---HTTCCEEEEEESCGGGG
T ss_pred cEEEEeCCCCCC-----C---HHHHHHHHHHHHHHHH---hcCCCEEEEEcCcHHHH
Confidence 999999997411 0 0011122244444443 23467899999986543
No 374
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.60 E-value=0.0082 Score=71.45 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=52.3
Q ss_pred Ce-EEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC--CCChhhhCCCCcceEeecCCC
Q 001395 869 PS-IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVGPP 945 (1086)
Q Consensus 869 p~-ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~--~lD~aLlrpgRFd~~I~~~~P 945 (1086)
|. +|+|||++.+.... ..-+..++..|-......++.+|++|++|. .++..+.. .|...|.|...
T Consensus 297 P~ivlvIDE~~~ll~~~----------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~ 364 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV----------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 364 (512)
T ss_dssp CEEEEEEETHHHHHHHH----------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCS
T ss_pred CcEEEEEeCHHHHHhhh----------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcC
Confidence 54 89999998876421 112233333333223345899999999997 57777776 78788889999
Q ss_pred CHHHHHHHHHH
Q 001395 946 NETDREEIFRI 956 (1086)
Q Consensus 946 ~~~eR~~Il~~ 956 (1086)
+..+...|+..
T Consensus 365 s~~dsr~ilg~ 375 (512)
T 2ius_A 365 SKIDSRTILDQ 375 (512)
T ss_dssp SHHHHHHHHSS
T ss_pred CHHHHHHhcCC
Confidence 99888887753
No 375
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.59 E-value=0.00099 Score=67.81 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=29.1
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEEEe
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 841 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~ 841 (1086)
++.++|+|+|||||||+|+.||..++.+|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 456899999999999999999999999887543
No 376
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0015 Score=79.74 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||+|||+.+ ..+......+...|..+... +..||++||+.+.
T Consensus 229 rv~iAraL~~~p~llllDEPts------------~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~ 283 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSS------------YLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSV 283 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTT------------TCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEECccc------------CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 5566777788899999999985 34555666667777666443 6688899998654
No 377
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.58 E-value=0.0011 Score=67.10 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
.|+|.|+||+||||+++.+|+.++..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999877643
No 378
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.56 E-value=0.0085 Score=71.34 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=46.3
Q ss_pred CCe-EEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC--CCCccccCCCCcceeeehhhhh
Q 001395 503 APA-VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD--SIEPALRRPGRLDREIEIDMSF 579 (1086)
Q Consensus 503 ~P~-ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d--~idpaL~r~GRfdr~I~i~l~~ 579 (1086)
.|. +|+|||+..++.. ....+. .++..+-...+.-++.+|.+|++++ .++..++. .|...|.+
T Consensus 296 lP~ivlvIDE~~~ll~~-------~~~~~~-~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l---- 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT-------VGKKVE-ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF---- 361 (512)
T ss_dssp CCEEEEEEETHHHHHHH-------HHHHHH-HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE----
T ss_pred CCcEEEEEeCHHHHHhh-------hhHHHH-HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEE----
Confidence 354 8999999877531 112222 2222222222344788889999987 46666655 56666666
Q ss_pred hhhhcccCCCCCCCHHHHHHHHH
Q 001395 580 LFSLLKNSPAAVPSPAQRLEILH 602 (1086)
Q Consensus 580 ~~~~~~~v~~~~Pd~~eR~~IL~ 602 (1086)
...+..+...|+.
T Consensus 362 ----------rv~s~~dsr~ilg 374 (512)
T 2ius_A 362 ----------TVSSKIDSRTILD 374 (512)
T ss_dssp ----------CCSSHHHHHHHHS
T ss_pred ----------EcCCHHHHHHhcC
Confidence 6778888777764
No 379
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.55 E-value=0.012 Score=70.75 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=52.6
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC--CCChhhhCCCCcceEeecCCCCH
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVGPPNE 947 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~--~lD~aLlrpgRFd~~I~~~~P~~ 947 (1086)
-+|+|||++.|.... ...+.. .+..|-......++.+|++|.+|. .|+..+.. -|...|.+...+.
T Consensus 345 ivvVIDE~~~L~~~~---------~~~~~~-~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---------GKKVEE-LIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHT---------CHHHHH-HHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhh---------hHHHHH-HHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCH
Confidence 589999999886532 122222 333332223456999999999997 78888876 7888888999998
Q ss_pred HHHHHHHH
Q 001395 948 TDREEIFR 955 (1086)
Q Consensus 948 ~eR~~Il~ 955 (1086)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877774
No 380
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.55 E-value=0.0021 Score=71.01 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 480 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l 480 (1086)
..+..++|.||||+||||+++.++..++..++.|++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 456678899999999999999999988555677776444
No 381
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.54 E-value=0.0038 Score=67.72 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH---cCCcEEEEcccccc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHD---SGVNLFTVNGPEVV 481 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~---lg~~~i~I~~s~l~ 481 (1086)
+..|+|.|+||+||||+|+.++.. .|..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 456899999999999999999987 68888766655443
No 382
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.53 E-value=0.0013 Score=66.85 Aligned_cols=32 Identities=34% Similarity=0.610 Sum_probs=28.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
..|+|.|+||+||||+|+.+++.+|..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999998877544
No 383
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.52 E-value=0.002 Score=67.87 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.5
Q ss_pred CCcceeCCCCCcchHHHHHHHHH
Q 001395 810 TGILMFGPPGCSKTLMARAVASE 832 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~ 832 (1086)
.-+.|.||+|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34889999999999999999875
No 384
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.52 E-value=0.002 Score=68.75 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.++++..+.|.||+|+|||||.++++..+
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556788899999999999999999999865
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.52 E-value=0.0051 Score=74.97 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.||+|||+.+ +.+......++..|..+....+..||++||+.+.
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~------------~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSA------------YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTT------------TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCcc------------CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 5567777788899999999884 3455556666666655433346788899987654
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.52 E-value=0.0014 Score=65.75 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=28.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
.+|+|.|+|||||||+++.+|+.+|.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47899999999999999999999999887543
No 387
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.51 E-value=0.0028 Score=74.64 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~l 468 (1086)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999988766
No 388
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.48 E-value=0.0088 Score=66.89 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=30.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEc
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVN 476 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~ 476 (1086)
.|+.++.-++|.|+||+|||+++..+|... +.+++.++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 478999999999999999999999887643 34555554
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.46 E-value=0.0024 Score=73.29 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=47.8
Q ss_pred hhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEccc-cc--------ccc-cchhhHHHHHHHHHHhhc
Q 001395 436 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGP-EV--------VSQ-NYGESEQALHEVFDSASQ 501 (1086)
Q Consensus 436 ~~~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg----~~~i~I~~s-~l--------~s~-~~Gese~~l~~vf~~a~~ 501 (1086)
+..+.+.++..++|.||+|+||||+++++++.+. ..++.+... ++ +.. .+|.....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3334467788899999999999999999998652 344343321 00 000 011111123445555666
Q ss_pred CCCeEEEEccc
Q 001395 502 SAPAVVFIDEL 512 (1086)
Q Consensus 502 ~~P~ILfIDEi 512 (1086)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 78999999997
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.46 E-value=0.0017 Score=67.18 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
.+..|+|.|+||+||||+|+.+++.++..++.++
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3456899999999999999999999998876553
No 391
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.46 E-value=0.0045 Score=74.45 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|++||+.+ +.+......++..|..+....+..||++||+.+.
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~------------~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSA------------YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTT------------TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCcc------------cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 6667788888899999999884 3455566666666655433336788899987654
No 392
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.45 E-value=0.0016 Score=79.27 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.++++..+.|.||+|+|||||++++++.+
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4667889999999999999999999999865
No 393
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.42 E-value=0.0017 Score=66.48 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
.+..|+|.|+||+||||+++.+++.++..++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4567999999999999999999999998766543
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.42 E-value=0.0017 Score=68.23 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
++..|+|.|+||+||||+++.+|+.++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999876654
No 395
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.42 E-value=0.0026 Score=74.99 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.8
Q ss_pred CcceeCCCCCcchHHHHHHHHHh
Q 001395 811 GILMFGPPGCSKTLMARAVASEA 833 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~ 833 (1086)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999998764
No 396
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.41 E-value=0.0036 Score=69.35 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHH-hccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL-DGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~L-d~~~~~~~v~VI~aTN~p~~ 925 (1086)
|..+++|....|.+|+|||+.+ +.+......++..+ .... .+..||++||+++.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts------------~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~ 221 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFG------------YLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH 221 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTT------------TCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH
T ss_pred HHHHHHHHHCCCCEEEEECCcc------------cCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHH
Confidence 4456777778899999999884 44566666676653 4432 26789999997643
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.41 E-value=0.0016 Score=66.33 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
+..|+|.|+||+||||+++.+++.++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999998876543
No 398
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.014 Score=68.32 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccc-------------------ccc-hhhHHHHHHHHHHh
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS-------------------QNY-GESEQALHEVFDSA 499 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s-------------------~~~-Gese~~l~~vf~~a 499 (1086)
++.-+++.|++|+||||++..+|..+ |..+..+++..... .+. .+....+...++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46678899999999999999998765 56666665432110 011 12334455667777
Q ss_pred hcCCCeEEEEccc
Q 001395 500 SQSAPAVVFIDEL 512 (1086)
Q Consensus 500 ~~~~P~ILfIDEi 512 (1086)
......+++||..
T Consensus 179 ~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KSKGVDIIIVDTA 191 (443)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 7766789999986
No 399
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=96.41 E-value=0.0043 Score=64.18 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=47.8
Q ss_pred HHHHHHHhhhcC--CeecCCCEEEEeecCceeEEEEEeecCCCcccccCCCCccccccccCCCCcEEEcCCceEEE
Q 001395 303 LLQTCAASWLYS--RSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYL 376 (1086)
Q Consensus 303 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~ 376 (1086)
+...+++++|.| |||..||.|.|++.+..+.|.|++++|. ++++|+++|.|++
T Consensus 130 ~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~---------------------~~v~V~~~T~I~~ 184 (187)
T 3tiw_A 130 LFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHC 184 (187)
T ss_dssp HHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESS---------------------SEEECCTTCEEEC
T ss_pred hHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCC---------------------CCEEECCCcEEEe
Confidence 446778899985 9999999999999999999999999997 7899999999985
No 400
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.39 E-value=0.0024 Score=77.87 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 925 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~ 925 (1086)
|-.+++|....|.||++||+.+ ..+......+.+.+..... +..+|.+||+++.
T Consensus 491 rv~iAral~~~p~illlDEpts------------~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~ 544 (595)
T 2yl4_A 491 RIAIARALLKNPKILLLDEATS------------ALDAENEYLVQEALDRLMD--GRTVLVIAHRLST 544 (595)
T ss_dssp HHHHHHHHHHCCSEEEEECCCS------------SCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccc------------CCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHH
Confidence 4456666667899999999985 3344444445555544332 4688889998653
No 401
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.39 E-value=0.0014 Score=66.86 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=28.4
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
..+.-++|.|+||+||||+|+.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345568999999999999999999999887765
No 402
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.38 E-value=0.0047 Score=71.30 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCC--eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCC
Q 001395 858 RSLFAKARANAP--SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGR 935 (1086)
Q Consensus 858 r~lf~~A~~~~p--~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgR 935 (1086)
+..+..+....| .||+|||+++ +.+......++..|..+. .+..||++||+++ ++. .
T Consensus 303 rl~lA~~l~~~~~~~~LlLDEpt~------------~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~-----~~~--~ 361 (415)
T 4aby_A 303 RVMLAVSTVLGADTPSVVFDEVDA------------GIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQ-----IAA--R 361 (415)
T ss_dssp HHHHHHHHHHCCSSSEEEESSTTT------------TCCHHHHHHHHHHHHHHT--TTSEEEEECSCHH-----HHT--T
T ss_pred HHHHHHHHHhCCCCCEEEEECCCC------------CCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHH-----HHh--h
Confidence 444555666678 8999999985 456667777777776654 2677888898753 333 4
Q ss_pred cceEeec
Q 001395 936 FDRLLYV 942 (1086)
Q Consensus 936 Fd~~I~~ 942 (1086)
+|+++.+
T Consensus 362 ~d~i~~l 368 (415)
T 4aby_A 362 AHHHYKV 368 (415)
T ss_dssp CSEEEEE
T ss_pred cCeEEEE
Confidence 5665555
No 403
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.38 E-value=0.0019 Score=64.89 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=26.4
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
..++|.||||+||||++++||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999876653
No 404
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.38 E-value=0.005 Score=72.43 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH----hCCcEEEEeCCc----ccccc----cc---------------------
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKGPE----LFSKW----VG--------------------- 851 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~----~~~~fi~v~~se----l~~~~----vG--------------------- 851 (1086)
|+.+..-++|.|+||+|||++|..+|.. .|.+++.++... +..+. .|
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~ 278 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTM 278 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 5666666999999999999999998764 255777776532 11100 00
Q ss_pred -----------------ccHHHHHHHHHHH-HhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCC
Q 001395 852 -----------------ESEKAVRSLFAKA-RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN 913 (1086)
Q Consensus 852 -----------------ese~~ir~lf~~A-~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~ 913 (1086)
-+...++...... +...|.+|+||++..+...... .......+..++..|..+....+
T Consensus 279 a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~----~~~~~~~i~~i~~~Lk~lAke~~ 354 (454)
T 2r6a_A 279 AMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRS----KENRQQEVSEISRSLKALARELE 354 (454)
T ss_dssp HHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCC----CCCHHHHHHHHHHHHHHHHHHhC
Confidence 0112222222222 2357899999999987532110 01234455666666665544456
Q ss_pred EEEEEecC
Q 001395 914 VTVIAATN 921 (1086)
Q Consensus 914 v~VI~aTN 921 (1086)
+.||++++
T Consensus 355 i~vi~~sq 362 (454)
T 2r6a_A 355 VPVIALSQ 362 (454)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEec
Confidence 77777765
No 405
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.37 E-value=0.0017 Score=65.96 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 474 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~ 474 (1086)
+..|+|.|+||+||||+++.+++.+|..++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999999876553
No 406
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.35 E-value=0.0026 Score=84.37 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=32.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEccc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGP 478 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~--~i~I~~s 478 (1086)
++.+++++.+.|+||+|+|||||++++.+.+... -+.+++.
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 4667899999999999999999999999877432 2555553
No 407
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.35 E-value=0.0018 Score=68.53 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
..+..|+|.|+||+||||+++.+|+.++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998876654
No 408
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.33 E-value=0.0019 Score=64.71 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
..|+|.|+||+||||+++.+++.+|.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999877653
No 409
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.32 E-value=0.0018 Score=64.34 Aligned_cols=29 Identities=31% Similarity=0.716 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
.|+|.||||+||||+++.+ +.+|..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8888887654
No 410
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.31 E-value=0.0025 Score=65.97 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
+..|+|.|+||+||||+++.+++.+|..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998776653
No 411
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.31 E-value=0.0017 Score=65.99 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
+..|+|.|+||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 412
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.31 E-value=0.0011 Score=67.62 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 845 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel 845 (1086)
+..+.-++|.||||+||||++++|+...+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3344458999999999999999999987777787776554
No 413
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.31 E-value=0.0022 Score=69.52 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEcc
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 477 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~ 477 (1086)
.++|.|||||||||+|+.+|+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887764
No 414
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.30 E-value=0.0018 Score=64.60 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.8
Q ss_pred cceeCCCCCcchHHHHHHHHHhCCcEEEEe
Q 001395 812 ILMFGPPGCSKTLMARAVASEAGLNFLAVK 841 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~~~~fi~v~ 841 (1086)
++|.|+||+||||+|+.|+..++.+++..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 789999999999999999999998876544
No 415
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.29 E-value=0.0049 Score=68.09 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=29.3
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCc
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 844 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~se 844 (1086)
+.-++|.||||+||||+|+.++.+.+..++.+++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 445899999999999999999998855566777633
No 416
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.28 E-value=0.017 Score=69.31 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=48.5
Q ss_pred eEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCCC--CCCccccCCCCcceeeehhhhhhhh
Q 001395 505 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD--SIEPALRRPGRLDREIEIDMSFLFS 582 (1086)
Q Consensus 505 ~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~d--~idpaL~r~GRfdr~I~i~l~~~~~ 582 (1086)
-+|+|||++.++... ...+...|..+... -+.-++.+|++|.++. .++..++. .|...|.+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~-GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~l------- 407 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK-ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAF------- 407 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH-CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEE-------
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH-HhhCCeEEEEEecCcccccccHHHHh--hhccEEEE-------
Confidence 489999999886421 12222333333322 2456799999999987 77777766 66667776
Q ss_pred hcccCCCCCCCHHHHHHHHH
Q 001395 583 LLKNSPAAVPSPAQRLEILH 602 (1086)
Q Consensus 583 ~~~~v~~~~Pd~~eR~~IL~ 602 (1086)
...+..+...||.
T Consensus 408 -------rv~s~~Dsr~ILd 420 (574)
T 2iut_A 408 -------QVSSKIDSRTILD 420 (574)
T ss_dssp -------CCSCHHHHHHHHS
T ss_pred -------EcCCHHHHHHhcC
Confidence 7777777777764
No 417
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.27 E-value=0.0031 Score=66.93 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHhC----------------------CcEEEEeCCcc---------------ccc
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEAG----------------------LNFLAVKGPEL---------------FSK 848 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~~----------------------~~fi~v~~sel---------------~~~ 848 (1086)
++...-+.|.||+|+|||||.++|+.... ..++..+...+ .+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc
Q ss_pred cccccHHHHHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCCh
Q 001395 849 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 928 (1086)
Q Consensus 849 ~vGese~~ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~ 928 (1086)
+.|.....++.+++. +.++++| +| .....++...+. .++.||++|++++.+..
T Consensus 93 ~yg~~~~~v~~~l~~-----G~illLD-LD----------------~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 93 YYGTSREAIEQVLAT-----GVDVFLD-ID----------------WQGAQQIRQKMP-----HARSIFILPPSKIELDR 145 (219)
T ss_dssp EEEEEHHHHHHHHTT-----TCEEEEE-CC----------------HHHHHHHHHHCT-----TCEEEEEECSSHHHHHH
T ss_pred cCCCCHHHHHHHHhc-----CCeEEEE-EC----------------HHHHHHHHHHcc-----CCEEEEEECCCHHHHHH
Q ss_pred hhhCCCC
Q 001395 929 ALLRPGR 935 (1086)
Q Consensus 929 aLlrpgR 935 (1086)
.++..|+
T Consensus 146 Rl~~rG~ 152 (219)
T 1s96_A 146 RLRGRGQ 152 (219)
T ss_dssp HHHTTSC
T ss_pred HHHHcCC
No 418
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.27 E-value=0.008 Score=67.08 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccccccc--------------------cchhhHHHHHHHHH
Q 001395 441 LRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ--------------------NYGESEQALHEVFD 497 (1086)
Q Consensus 441 i~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s~--------------------~~Gese~~l~~vf~ 497 (1086)
..++..++|.||+|+||||++..+|..+ +..+..+++...... ..++....+...+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3567788999999999999999999765 455555543211100 00112222233444
Q ss_pred HhhcCCCeEEEEccc
Q 001395 498 SASQSAPAVVFIDEL 512 (1086)
Q Consensus 498 ~a~~~~P~ILfIDEi 512 (1086)
.+....+.+++||+.
T Consensus 181 ~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHTTCSEEEEEEC
T ss_pred HHHhcCCCEEEEECC
Confidence 555667889999986
No 419
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.27 E-value=0.0029 Score=65.58 Aligned_cols=37 Identities=30% Similarity=0.588 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 480 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l 480 (1086)
.++..++|.||+|+||||+++.+++.+|..+ +++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 3567899999999999999999999987644 455444
No 420
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.27 E-value=0.0025 Score=64.21 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 473 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i 473 (1086)
++..++|.||||+||||+++.+++.+|..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 3567889999999999999999998876554
No 421
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.26 E-value=0.002 Score=65.14 Aligned_cols=29 Identities=38% Similarity=0.580 Sum_probs=26.6
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
.++|.|+||+||||+|++||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48899999999999999999999988765
No 422
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.25 E-value=0.0021 Score=65.14 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 473 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i 473 (1086)
+..|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998876
No 423
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.25 E-value=0.0022 Score=65.73 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
+..|+|.|+||+||||+++.+++.++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999998766544
No 424
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.24 E-value=0.0027 Score=64.37 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcccc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPE 479 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~ 479 (1086)
.++..+.|.|++|+||||+++.++..+ |.+++.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 356778999999999999999999987 88888877533
No 425
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.23 E-value=0.0038 Score=67.38 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=31.9
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 845 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel 845 (1086)
.+..++|.|+||+||||+|+.|+..++..++.+++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34558999999999999999999999877777777654
No 426
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.23 E-value=0.0085 Score=71.78 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=66.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccc--------------------------ccch--h
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS--------------------------QNYG--E 487 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s--------------------------~~~G--e 487 (1086)
.++.++..++|.||||+|||||++.++... |..++.+...+-.. .+.. .
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 377889999999999999999999998754 44444443322100 0000 1
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 488 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 488 se~~l~~vf~~a~~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.....+.++..+....|.+|+||=+-.+... ..+ ......+..++..+... ++.+|.+++..
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~~----~~~~~~i~~ll~~l~~~-g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARG--VSN----NAFRQFVIGVTGYAKQE-EITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SCH----HHHHHHHHHHHHHHHHT-TCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CCh----HHHHHHHHHHHHHHHhC-CCEEEEEECcc
Confidence 2334555666777788999999955555322 111 12444455555554433 56666666654
No 427
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.23 E-value=0.0027 Score=64.38 Aligned_cols=33 Identities=36% Similarity=0.680 Sum_probs=28.6
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
.+..++|+|+||+||||+++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345699999999999999999999999887653
No 428
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.22 E-value=0.0011 Score=87.51 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=32.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEccc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGP 478 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~lg~~--~i~I~~s 478 (1086)
++.++++..+.|+||+|+|||||++++++.+... -+.+++.
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~ 452 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTE
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 4667899999999999999999999999876332 2455543
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.22 E-value=0.0027 Score=64.47 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
+..|+|.|+||+||||+++.+++.++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999998766654
No 430
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.22 E-value=0.0066 Score=77.27 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHH
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAH 466 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~ 466 (1086)
..+..++|.||.|+||||+.|.+|.
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998853
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.21 E-value=0.0027 Score=67.54 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
+..|+|.|+||+||||+++.||+.++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999876654
No 432
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.0049 Score=65.35 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=28.4
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH----hCCcEEEEeC
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKG 842 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~----~~~~fi~v~~ 842 (1086)
|+++..-++|+|+||+|||++|..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4555566999999999999999876533 3666766664
No 433
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.19 E-value=0.0022 Score=64.56 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=23.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHH-HcCCcE
Q 001395 445 KGVLLHGPPGTGKTSLARLCAH-DSGVNL 472 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~-~lg~~~ 472 (1086)
..|+|.|+||+||||+|+.+++ .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4588999999999999999998 455433
No 434
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.18 E-value=0.004 Score=68.96 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 438 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 438 ~lgi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3557788899999999999999999999765
No 435
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.18 E-value=0.0022 Score=67.44 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
+..|+|.|+||+||||+++.+|+.++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999999877655
No 436
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.17 E-value=0.0026 Score=84.30 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 857 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 857 ir~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
-|-.+++|.-.+|.|++|||+.+=... ..++.+.+.+..+- .+.++|.+||+...+
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~---------~te~~i~~~l~~~~-----~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDA---------ESEGIVQQALDKAA-----KGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCT---------TTHHHHHHHHHHHH-----TTSEEEEECSCTTTT
T ss_pred HHHHHHHHHccCCCEEEEecccccCCH---------HHHHHHHHHHHHHh-----CCCEEEEEcccHHHH
Confidence 366677777788999999999853321 13444443333332 256788889998765
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.17 E-value=0.0032 Score=66.82 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 482 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s 482 (1086)
.+..++-|+|.||||+||+|.|+.|++.+|... |+..+++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 345677888999999999999999999998654 45555553
No 438
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.16 E-value=0.011 Score=66.03 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=45.2
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCcccc-------cc------------c-cccHHHHHHHHHHH
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS-------KW------------V-GESEKAVRSLFAKA 864 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~~-------~~------------v-Gese~~ir~lf~~A 864 (1086)
.+.-++|.||+|+||||++..+|..+ +..+..+.+.-+.. .| . ++........+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 34458899999999999999998764 44554444321100 00 0 11112223456666
Q ss_pred HhcCCeEEEEecCch
Q 001395 865 RANAPSIIFFDEIDG 879 (1086)
Q Consensus 865 ~~~~p~ILflDEid~ 879 (1086)
....+.+|++|++..
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 777889999999863
No 439
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.15 E-value=0.026 Score=62.52 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 477 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~ 477 (1086)
.++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356788999999999999999998754 446655554
No 440
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.15 E-value=0.0033 Score=65.19 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccc
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEV 480 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l 480 (1086)
.++..+.|.||+|+||||+++++++.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 467788999999999999999999988 554445654443
No 441
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.15 E-value=0.0028 Score=66.26 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
.|+|.||||+||||+|+.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998877655
No 442
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.14 E-value=0.003 Score=65.33 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 476 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~ 476 (1086)
.+..|+|.|+||+||||+++.+++.+|..++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 3456889999999999999999999988666543
No 443
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.13 E-value=0.008 Score=70.18 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=45.3
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeCCccc----------cc------c---ccc-cHHHHHHHHHHHH
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF----------SK------W---VGE-SEKAVRSLFAKAR 865 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~sel~----------~~------~---vGe-se~~ir~lf~~A~ 865 (1086)
+.-+++.||+|+||||++..||..+ +..+..+.+.-+. .. + .+. .....+..++.++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4458899999999999999998654 5666555543110 00 0 011 1122345556666
Q ss_pred hcCCeEEEEecCchh
Q 001395 866 ANAPSIIFFDEIDGL 880 (1086)
Q Consensus 866 ~~~p~ILflDEid~L 880 (1086)
...+.+|++|.+..+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 567889999998643
No 444
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.12 E-value=0.0019 Score=66.10 Aligned_cols=32 Identities=44% Similarity=0.665 Sum_probs=27.2
Q ss_pred CCCcceeCCCCCcchHHHHHHHHH-hCCcEEEE
Q 001395 809 PTGILMFGPPGCSKTLMARAVASE-AGLNFLAV 840 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~-~~~~fi~v 840 (1086)
+..++|+|+|||||||+++.+|.. ++.+++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 344899999999999999999998 78777653
No 445
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.0029 Score=64.29 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=27.1
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
.|+|.|+||+||||+|+.||..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999987653
No 446
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.12 E-value=0.0045 Score=81.87 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCCCCcceeCCCCCcchHHHHHHHHHh
Q 001395 807 RPPTGILMFGPPGCSKTLMARAVASEA 833 (1086)
Q Consensus 807 ~~~~gvLL~GPpGTGKTtLAkalA~~~ 833 (1086)
++..-+.|+||+|+|||||+++|++..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344449999999999999999998765
No 447
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.12 E-value=0.011 Score=69.13 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccccccc----------c------c---ch-hhHHHHHHHHHHh
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS----------Q------N---YG-ESEQALHEVFDSA 499 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s~l~s----------~------~---~G-ese~~l~~vf~~a 499 (1086)
++..+++.||+|+||||++..+|..+ |..+..+++..... . + .+ +........++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678889999999999999998765 66666555321100 0 0 01 1222234455566
Q ss_pred hcCCCeEEEEccch
Q 001395 500 SQSAPAVVFIDELD 513 (1086)
Q Consensus 500 ~~~~P~ILfIDEiD 513 (1086)
....+.+++||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 65678899999863
No 448
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.12 E-value=0.003 Score=63.01 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887654
No 449
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.11 E-value=0.0029 Score=66.09 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
.|+|.||||+||||+|+.+++.+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998877654
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.10 E-value=0.0026 Score=72.18 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=26.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSGVNLFT 474 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg~~~i~ 474 (1086)
..++|+||||+||||+++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999999877744
No 451
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.10 E-value=0.022 Score=59.35 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=58.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEccc---------ccccccch------------------hhHHHHHH
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGP---------EVVSQNYG------------------ESEQALHE 494 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~s---------~l~s~~~G------------------ese~~l~~ 494 (1086)
..|++|+++|.||||+|-.+|-.. |..+..+... .++... + +.+.....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 468899999999999998887543 6666655321 122221 1 01223344
Q ss_pred HHHHhh----cCCCeEEEEccchhhccCCCCCCchhHHHHHHHHHHHhhccccCCCeeEEeccCCC
Q 001395 495 VFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 556 (1086)
Q Consensus 495 vf~~a~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~rv~~~Ll~lLd~l~~~~~viVIatTN~~ 556 (1086)
.++.++ .....+|++||+-....-+--+ ...+++++.. +..+.-||.|+|.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~--------~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLP--------LEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--------HHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCC--------HHHHHHHHHh--CcCCCEEEEECCCC
Confidence 444433 3456899999996543211111 1345555553 44567788888764
No 452
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.08 E-value=0.0022 Score=67.48 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 474 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~ 474 (1086)
.+..|+|.||||+||||+++.+|+.++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 35679999999999999999999999875543
No 453
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.08 E-value=0.0021 Score=77.87 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCcceeCCCCCcchHHHHHHHHH---hCCcEEEEe
Q 001395 810 TGILMFGPPGCSKTLMARAVASE---AGLNFLAVK 841 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~ 841 (1086)
..+++.||||||||+++++++.. .+..++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 45899999999999999999764 355555443
No 454
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.08 E-value=0.0031 Score=67.76 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 442 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 442 ~~~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
.++..|+|.||||+||||+|+.+++.++..++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567799999999999999999999998766644
No 455
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.07 E-value=0.0091 Score=74.97 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=53.8
Q ss_pred CCcceeCCCCCcchHHHHHHHHHh-----CCcE----EE----------EeCCccccccccccHHHHHHHHH-HHHhcCC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEA-----GLNF----LA----------VKGPELFSKWVGESEKAVRSLFA-KARANAP 869 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~-----~~~f----i~----------v~~sel~~~~vGese~~ir~lf~-~A~~~~p 869 (1086)
.-++|.||+|+||||+.|+++... |..+ .. +...+.+...........+++.. ......|
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~p 687 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 687 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Confidence 348899999999999999998642 2110 01 11111111000011111122211 1235689
Q ss_pred eEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 870 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 870 ~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
.+|++||+.+- .+. .....+...++..+. ...+..+|++||..+..
T Consensus 688 sLlLLDEp~~G-----td~---~d~~~i~~~ll~~l~---~~~g~~vl~~TH~~el~ 733 (800)
T 1wb9_A 688 SLVLMDEIGRG-----TST---YDGLSLAWACAENLA---NKIKALTLFATHYFELT 733 (800)
T ss_dssp EEEEEESCCCC-----SSS---SHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGG
T ss_pred CEEEEECCCCC-----CCh---hHHHHHHHHHHHHHH---hccCCeEEEEeCCHHHH
Confidence 99999999631 110 111122234454443 22367899999988654
No 456
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.98 E-value=0.0033 Score=62.95 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=27.5
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
.++|.|+|||||||+|+.||..++.+++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999988764
No 457
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.0029 Score=68.47 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=28.1
Q ss_pred cceeCCCCCcchHHHHHHHHHhCCcEEEEeC
Q 001395 812 ILMFGPPGCSKTLMARAVASEAGLNFLAVKG 842 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~~~~fi~v~~ 842 (1086)
++|.||||+||||+|+.||...+.+++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999999998877654
No 458
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0031 Score=68.33 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
+..|.|.|++|+||||+++.+|+.+|.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 67899999999999999999999999877654
No 459
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.95 E-value=0.0048 Score=63.54 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEc
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVN 476 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~l-g~~~i~I~ 476 (1086)
.+..|+|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45679999999999999999999998 57776654
No 460
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.94 E-value=0.0064 Score=65.93 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=29.8
Q ss_pred CCcceeCCCCCcchHHHHHHHHH---hCCcEEEEeCCcc
Q 001395 810 TGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPEL 845 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v~~sel 845 (1086)
.-++|.|+||+||||+|+.++.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 34889999999999999999987 7888886665443
No 461
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.92 E-value=0.0084 Score=62.47 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=69.6
Q ss_pred CcceeCCCCCcchHHHHHHHHH---hCCcEEEE---eCC------cccccc-----------ccc------cHHHHHHHH
Q 001395 811 GILMFGPPGCSKTLMARAVASE---AGLNFLAV---KGP------ELFSKW-----------VGE------SEKAVRSLF 861 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~---~~~~fi~v---~~s------el~~~~-----------vGe------se~~ir~lf 861 (1086)
.+++|+++|.||||+|-++|-+ .|..+..+ ++. +++... .-. .....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 4889999999999999999765 47777776 331 122222 100 123445566
Q ss_pred HHHHh----cCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCCChhhhCCCCcc
Q 001395 862 AKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 937 (1086)
Q Consensus 862 ~~A~~----~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~lD~aLlrpgRFd 937 (1086)
..++. ...++|+|||+-....-+ -.. ...++..|.. ...+.-||.|+|.+ .++|+. .-|
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g-------~l~---~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e--~AD 172 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYD-------YLP---LEEVISALNA--RPGHQTVIITGRGC---HRDILD--LAD 172 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTT-------SSC---HHHHHHHHHT--SCTTCEEEEECSSC---CHHHHH--HCS
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCC-------CCC---HHHHHHHHHh--CcCCCEEEEECCCC---cHHHHH--hCc
Confidence 66654 447899999996432211 011 2235555553 24467889999876 447766 556
Q ss_pred eEeec
Q 001395 938 RLLYV 942 (1086)
Q Consensus 938 ~~I~~ 942 (1086)
.+-++
T Consensus 173 ~VTem 177 (196)
T 1g5t_A 173 TVSEL 177 (196)
T ss_dssp EEEEC
T ss_pred ceeee
Confidence 55544
No 462
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.88 E-value=0.0043 Score=64.17 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=27.4
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
.-|+|.|+||+||||+|+.|+..++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3488999999999999999999999887654
No 463
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.88 E-value=0.0037 Score=62.05 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=25.0
Q ss_pred cceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 812 ILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
++|.||||+||||+|+.+ ...|.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 789999999999999999 8888887654
No 464
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.88 E-value=0.018 Score=61.29 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred cceeCCCCCcchHHHHHHHHHh---CCcEEEEeC--------Cccccccccc------------cHHHHHHHHHHHHhcC
Q 001395 812 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKG--------PELFSKWVGE------------SEKAVRSLFAKARANA 868 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~--------sel~~~~vGe------------se~~ir~lf~~A~~~~ 868 (1086)
+++.|+|||||||+|-.+|..+ |..++.+.. ..+....-.. .+..+..++. ..
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~~ 84 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----AA 84 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----HC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----cC
Q ss_pred CeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCC------------------CCCChhh
Q 001395 869 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP------------------DKIDPAL 930 (1086)
Q Consensus 869 p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p------------------~~lD~aL 930 (1086)
|.++++||+... ..........-..+..++.. ++-|++|+|-. +.++..+
T Consensus 85 pdlvIVDElG~~----~~~~~r~~~~~qDV~~~l~s--------gidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~ 152 (228)
T 2r8r_A 85 PSLVLVDELAHT----NAPGSRHTKRWQDIQELLAA--------GIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWV 152 (228)
T ss_dssp CSEEEESCTTCB----CCTTCSSSBHHHHHHHHHHT--------TCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHH
T ss_pred CCEEEEeCCCCC----CcccchhHHHHHHHHHHHcC--------CCCEEEEccccccccHHHHHHHHcCCCcCCcCccHH
Q ss_pred hCCCCcceEeecCCCCHHHHHHH
Q 001395 931 LRPGRFDRLLYVGPPNETDREEI 953 (1086)
Q Consensus 931 lrpgRFd~~I~~~~P~~~eR~~I 953 (1086)
++ +.|.+..+..|..+-+..+
T Consensus 153 ~~--~a~~v~lvD~~p~~l~~rl 173 (228)
T 2r8r_A 153 LQ--EAFDLVLIDLPPRELLERL 173 (228)
T ss_dssp HH--TCSEEEEBCCCHHHHHHHH
T ss_pred Hh--hCCeEEEecCCHHHHHHHH
No 465
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.86 E-value=0.0048 Score=63.83 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=27.2
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
+.-++|.|+||+||||+|+.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4568999999999999999999999877665
No 466
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.85 E-value=0.0086 Score=73.01 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS 468 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l 468 (1086)
.+.++..+.|.||+|+|||||+++|+..+
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678889999999999999999999865
No 467
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.85 E-value=0.0043 Score=65.20 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=27.7
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
+..++|.|+||+||||+|+.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 34589999999999999999999999877654
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.84 E-value=0.0052 Score=64.60 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEccccccc
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 482 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~s 482 (1086)
.|+|.||||+||+|.|+.||+.+|...+ +..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHHH
Confidence 3788999999999999999999987554 4445543
No 469
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.84 E-value=0.0056 Score=77.91 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCCCC
Q 001395 858 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 926 (1086)
Q Consensus 858 r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~~l 926 (1086)
|..+.+|....|.||++||+.+ +.+......+...|.. .+..||++||+.+.+
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs------------~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTN------------HLDTVNVAWLVNYLNT----CGITSITISHDSVFL 608 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTT------------TCCHHHHHHHHHHHHH----SCSEEEEECSCHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCcc------------CCCHHHHHHHHHHHHh----CCCEEEEEECCHHHH
Confidence 5566777778899999999884 3455666667766664 367888999986553
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.83 E-value=0.02 Score=67.19 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEcc
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 477 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~~ 477 (1086)
|+.++.-++|.|+||+|||++|..+|... |.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 78899999999999999999998777644 566666653
No 471
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.83 E-value=0.0042 Score=62.22 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=26.5
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
.++|.|+||+||||+|+.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48899999999999999999999988765
No 472
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.81 E-value=0.004 Score=63.23 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=25.7
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
.++|.|+||+||||+++.||..++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 48899999999999999999999876654
No 473
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.81 E-value=0.0046 Score=64.75 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 475 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~I 475 (1086)
.|+|.|+||+||||+++.+++.+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999998877654
No 474
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.81 E-value=0.0046 Score=64.07 Aligned_cols=36 Identities=33% Similarity=0.639 Sum_probs=28.2
Q ss_pred CCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCcc
Q 001395 808 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 845 (1086)
Q Consensus 808 ~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel 845 (1086)
.+.-++|.||||+||||++++|+..+|..+ +++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 344588999999999999999999987544 444443
No 475
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.80 E-value=0.024 Score=62.93 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=42.0
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCCccc-------cc---------cccccHHHHHHHHHHHHhcC
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPELF-------SK---------WVGESEKAVRSLFAKARANA 868 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~sel~-------~~---------~vGese~~ir~lf~~A~~~~ 868 (1086)
+.-++|.||+|+||||++..||..+ |..+..+.+.-.. .. +.......++..+..+ ..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~~ 182 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--SE 182 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--cC
Confidence 4458899999999999999998653 5566555543210 00 0111223344445443 56
Q ss_pred CeEEEEecCc
Q 001395 869 PSIIFFDEID 878 (1086)
Q Consensus 869 p~ILflDEid 878 (1086)
+.+|++|-..
T Consensus 183 ~dlvIiDT~G 192 (296)
T 2px0_A 183 YDHVFVDTAG 192 (296)
T ss_dssp SSEEEEECCC
T ss_pred CCEEEEeCCC
Confidence 7899999543
No 476
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.80 E-value=0.0065 Score=63.74 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 474 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~ 474 (1086)
+..|.|.||+|+||||+++.+++.+|.+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3468899999999999999999999876653
No 477
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.80 E-value=0.012 Score=72.74 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCe--EEEEecCchhhhhcCCCCCCCCccHHHHHHHHHHHhccccCCCEEEEEecCCCC
Q 001395 857 VRSLFAKARANAPS--IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 924 (1086)
Q Consensus 857 ir~lf~~A~~~~p~--ILflDEid~L~~~r~~~~~~~~~~~~v~~~LL~~Ld~~~~~~~v~VI~aTN~p~ 924 (1086)
-|..+++|....|. +|++||+.+- .+......++..|..+.. .+..||++||+.+
T Consensus 209 QRv~iArAL~~~p~~~lLlLDEPtsg------------LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 209 QRIRLATQIGSRLTGVLYVLDEPSIG------------LHQRDNDRLIATLKSMRD-LGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHHHHHHTCCCSCEEEEECTTTT------------CCGGGHHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred HHHHHHHHHhhCCCCCEEEEECCccC------------CCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 35566777777877 9999998852 233333444444443332 3678999999864
No 478
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.79 E-value=0.0039 Score=63.04 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEE
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFL 838 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi 838 (1086)
.-++|.|+||+||||+|+.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 44889999999999999999999999877
No 479
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.79 E-value=0.0041 Score=63.28 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=26.5
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
.-++|.|+||+||||+|+.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 448899999999999999999999987654
No 480
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.78 E-value=0.017 Score=68.80 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEcc
Q 001395 440 GLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 477 (1086)
Q Consensus 440 gi~~~~~vLL~GPpGTGKTtLAralA~~l----g~~~i~I~~ 477 (1086)
|+.++.-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 78899999999999999999998887654 456666554
No 481
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.78 E-value=0.026 Score=62.98 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh---CCcEEEEeC
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKG 842 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~---~~~fi~v~~ 842 (1086)
|+.+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56666669999999999999999997653 456766664
No 482
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.78 E-value=0.0075 Score=62.41 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 445 KGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 445 ~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
+.|+|.||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999987653
No 483
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.75 E-value=0.0068 Score=61.67 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCcEEEEc
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDS---GVNLFTVN 476 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~l---g~~~i~I~ 476 (1086)
.|+|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887764
No 484
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.72 E-value=0.0095 Score=68.73 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=24.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 001395 439 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 469 (1086)
Q Consensus 439 lgi~~~~~vLL~GPpGTGKTtLAralA~~lg 469 (1086)
+.+.++ -+.|+||+|+|||||.++|+..++
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 456677 788999999999999999965543
No 485
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.72 E-value=0.021 Score=67.89 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHHh----CCcEEEEeCC
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGP 843 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~~----~~~fi~v~~s 843 (1086)
|+.+..-++|.|+||+|||++|..+|... +.+++.++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 56666669999999999999999987653 5577777753
No 486
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.72 E-value=0.023 Score=71.31 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHH
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHD 467 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~ 467 (1086)
++..++|.||+|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4567889999999999999998864
No 487
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.71 E-value=0.0046 Score=63.13 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.9
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
+.-++|.|+||+||||+|+.||..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 44589999999999999999999999877654
No 488
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.71 E-value=0.0064 Score=62.40 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 001395 446 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 474 (1086)
Q Consensus 446 ~vLL~GPpGTGKTtLAralA~~lg~~~i~ 474 (1086)
.|+|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986653
No 489
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.68 E-value=0.0048 Score=62.64 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.5
Q ss_pred CCCcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 809 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 809 ~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
+.-++|.|+||+||||+|+.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34589999999999999999999999776654
No 490
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.67 E-value=0.0064 Score=67.71 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEcccccc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 481 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s~l~ 481 (1086)
++-++|.||+|+|||+|+..+|+.++..++..+...+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 45678899999999999999999999888877765543
No 491
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.67 E-value=0.0067 Score=64.98 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 001395 443 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 473 (1086)
Q Consensus 443 ~~~~vLL~GPpGTGKTtLAralA~~lg~~~i 473 (1086)
.+..+.|.||||+||||+++.|++.+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3578999999999999999999999887544
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.67 E-value=0.013 Score=65.63 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=29.9
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEEEeC
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 842 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~ 842 (1086)
..++|.||+|+|||++|+.||..++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 458999999999999999999999998888864
No 493
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.67 E-value=0.01 Score=63.41 Aligned_cols=33 Identities=27% Similarity=0.169 Sum_probs=27.7
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEEEeCC
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 843 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~s 843 (1086)
.++++||+|+|||.+|.+++...+...+.+-..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999988887777666654
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.67 E-value=0.015 Score=65.56 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEccc
Q 001395 444 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 478 (1086)
Q Consensus 444 ~~~vLL~GPpGTGKTtLAralA~~lg~~~i~I~~s 478 (1086)
++.|+|.||+|+|||+|+..||+.++..++..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 45688999999999999999999999888776644
No 495
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.66 E-value=0.0047 Score=65.54 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCCCCCcceeCCCCCcchHHHHHHHHHhCCcEEEEeCCccc
Q 001395 806 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 846 (1086)
Q Consensus 806 ~~~~~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v~~sel~ 846 (1086)
+..++-|+|.||||+||+|.|+.||..++.+.+ +..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 344566889999999999999999999987654 444443
No 496
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.65 E-value=0.0054 Score=61.77 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.1
Q ss_pred CcceeCCCCCcchHHHHHHHHHhCCcEEE
Q 001395 811 GILMFGPPGCSKTLMARAVASEAGLNFLA 839 (1086)
Q Consensus 811 gvLL~GPpGTGKTtLAkalA~~~~~~fi~ 839 (1086)
-++|.||||+||||+++.++..+|..++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 48899999999999999999988765543
No 497
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.65 E-value=0.0059 Score=64.91 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.4
Q ss_pred CCcceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 810 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 810 ~gvLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
..++|.|+||+||||+|+.||..++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999877654
No 498
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.63 E-value=0.024 Score=73.04 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred hCCCC-------CCCcceeCCCCCcchHHHHHHHHH-------------------hCCcEEEEeCCccccccccccHHHH
Q 001395 804 IGTRP-------PTGILMFGPPGCSKTLMARAVASE-------------------AGLNFLAVKGPELFSKWVGESEKAV 857 (1086)
Q Consensus 804 lg~~~-------~~gvLL~GPpGTGKTtLAkalA~~-------------------~~~~fi~v~~sel~~~~vGese~~i 857 (1086)
++... ..-++|.||+|+||||+.|.++-. .+.-|..+...+............+
T Consensus 777 l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em 856 (1022)
T 2o8b_B 777 IGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVEL 856 (1022)
T ss_dssp ESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHH
T ss_pred eccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHH
Q ss_pred -HHHHHHHHhcCCeEEEEecCchhhhhcCCCCCCCCccHHH-HHHHHHHHhccccCCCEEEEEecCC
Q 001395 858 -RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRV-MSQLLVELDGLHQRVNVTVIAATNR 922 (1086)
Q Consensus 858 -r~lf~~A~~~~p~ILflDEid~L~~~r~~~~~~~~~~~~v-~~~LL~~Ld~~~~~~~v~VI~aTN~ 922 (1086)
+..+..+....|.+|+|||+.+ +.+..- ...+...++.+....+..+|++||.
T Consensus 857 ~~~a~al~la~~~sLlLLDEp~~------------Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 857 SETASILMHATAHSLVLVDELGR------------GTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp HHHHHHHHHCCTTCEEEEECTTT------------TSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred HHHHHHHHhCCCCcEEEEECCCC------------CCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
No 499
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.63 E-value=0.018 Score=67.41 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCCCCCCcceeCCCCCcchHHHHHHHHH----hCCcEEEEeC
Q 001395 805 GTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKG 842 (1086)
Q Consensus 805 g~~~~~gvLL~GPpGTGKTtLAkalA~~----~~~~fi~v~~ 842 (1086)
|+.+..-++|.|+||+|||++|..+|.. .+.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 5666666999999999999999988754 2567777765
No 500
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.61 E-value=0.0054 Score=64.05 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=26.0
Q ss_pred cceeCCCCCcchHHHHHHHHHhCCcEEEE
Q 001395 812 ILMFGPPGCSKTLMARAVASEAGLNFLAV 840 (1086)
Q Consensus 812 vLL~GPpGTGKTtLAkalA~~~~~~fi~v 840 (1086)
++|.||||+||||+|+.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998877654
Done!