Query 001396
Match_columns 1086
No_of_seqs 904 out of 5015
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 23:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 3.1E-70 6.8E-75 539.2 32.4 487 5-647 17-514 (519)
2 KOG0319 WD40-repeat-containing 100.0 5.2E-60 1.1E-64 501.8 48.4 577 334-1004 25-621 (775)
3 KOG0275 Conserved WD40 repeat- 100.0 3.1E-58 6.6E-63 439.6 28.4 483 5-644 7-507 (508)
4 KOG0318 WD40 repeat stress pro 100.0 6.5E-53 1.4E-57 430.1 61.9 576 332-1002 22-602 (603)
5 KOG0319 WD40-repeat-containing 100.0 2.8E-55 6.1E-60 465.8 46.5 550 326-960 60-620 (775)
6 KOG0291 WD40-repeat-containing 100.0 3.2E-51 6.9E-56 434.7 63.3 593 312-1054 38-708 (893)
7 KOG0318 WD40 repeat stress pro 100.0 2.8E-50 6.1E-55 410.9 58.8 541 321-959 52-602 (603)
8 KOG0306 WD40-repeat-containing 100.0 2E-48 4.3E-53 413.3 52.6 583 330-1058 23-667 (888)
9 KOG0271 Notchless-like WD40 re 100.0 4.4E-51 9.5E-56 400.0 28.0 333 318-708 105-479 (480)
10 KOG0306 WD40-repeat-containing 100.0 1.9E-48 4E-53 413.5 48.1 547 328-962 65-667 (888)
11 KOG0271 Notchless-like WD40 re 100.0 3.4E-50 7.3E-55 393.8 28.7 367 386-908 111-479 (480)
12 KOG0291 WD40-repeat-containing 100.0 5E-45 1.1E-49 387.7 62.0 540 395-1058 19-615 (893)
13 KOG1408 WD40 repeat protein [F 100.0 1.9E-42 4.1E-47 364.4 40.2 621 331-1055 40-713 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 1.8E-40 3.9E-45 349.5 41.7 509 322-911 72-714 (1080)
15 KOG1063 RNA polymerase II elon 100.0 2.5E-39 5.4E-44 341.7 47.1 607 333-1002 19-763 (764)
16 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-42 1.4E-46 341.0 23.1 284 325-644 172-458 (459)
17 KOG1539 WD repeat protein [Gen 100.0 2.2E-37 4.8E-42 333.8 56.3 580 334-1053 39-646 (910)
18 KOG0286 G-protein beta subunit 100.0 1.9E-39 4.1E-44 308.0 33.2 295 319-644 46-343 (343)
19 KOG0279 G protein beta subunit 100.0 1.3E-39 2.9E-44 307.4 30.6 298 320-646 7-313 (315)
20 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-41 1.4E-45 334.0 22.2 285 388-708 173-458 (459)
21 KOG0276 Vesicle coat complex C 100.0 8.1E-38 1.8E-42 325.7 43.5 481 321-959 6-490 (794)
22 KOG0286 G-protein beta subunit 100.0 8.7E-38 1.9E-42 296.7 32.4 287 385-708 50-343 (343)
23 KOG1539 WD repeat protein [Gen 100.0 9.6E-36 2.1E-40 321.3 50.6 555 325-959 73-648 (910)
24 KOG0263 Transcription initiati 100.0 8.7E-38 1.9E-42 337.5 35.0 278 313-605 363-652 (707)
25 KOG0315 G-protein beta subunit 100.0 1.6E-37 3.5E-42 287.8 30.8 293 340-667 9-309 (311)
26 KOG1063 RNA polymerase II elon 100.0 1E-35 2.2E-40 314.6 44.0 591 396-1055 20-763 (764)
27 KOG0292 Vesicle coat complex C 100.0 7.1E-35 1.5E-39 315.0 48.5 583 324-1058 5-597 (1202)
28 KOG0276 Vesicle coat complex C 100.0 2.9E-35 6.4E-40 306.7 42.5 465 386-1001 9-489 (794)
29 KOG0279 G protein beta subunit 100.0 4.7E-36 1E-40 283.5 31.9 295 725-1055 12-313 (315)
30 KOG0273 Beta-transducin family 100.0 2.8E-36 6E-41 304.8 31.8 345 316-757 167-522 (524)
31 KOG0295 WD40 repeat-containing 100.0 9.3E-37 2E-41 298.5 24.9 292 319-645 99-405 (406)
32 KOG2106 Uncharacterized conser 100.0 7.4E-33 1.6E-37 281.8 51.1 539 317-1001 55-625 (626)
33 KOG0296 Angio-associated migra 100.0 7.3E-35 1.6E-39 285.6 34.6 339 430-910 59-398 (399)
34 KOG0296 Angio-associated migra 100.0 4.4E-35 9.6E-40 287.1 30.5 335 318-709 54-397 (399)
35 KOG0285 Pleiotropic regulator 100.0 1.4E-35 3.1E-40 288.7 26.2 298 315-648 138-441 (460)
36 KOG0315 G-protein beta subunit 100.0 1.9E-34 4.2E-39 267.4 32.2 296 493-889 10-309 (311)
37 KOG2048 WD40 repeat protein [G 100.0 4.1E-31 8.9E-36 279.8 57.1 550 390-1055 25-601 (691)
38 KOG0645 WD40 repeat protein [G 100.0 1.1E-33 2.3E-38 266.2 32.0 292 320-646 6-311 (312)
39 KOG0292 Vesicle coat complex C 100.0 2.6E-32 5.7E-37 295.3 44.3 506 386-1010 5-525 (1202)
40 KOG0265 U5 snRNP-specific prot 100.0 6.2E-34 1.3E-38 271.9 27.3 289 323-644 42-336 (338)
41 KOG0273 Beta-transducin family 100.0 8E-34 1.7E-38 287.1 29.7 279 329-646 236-523 (524)
42 KOG0316 Conserved WD40 repeat- 100.0 4.2E-34 9.2E-39 262.8 25.1 293 314-644 3-297 (307)
43 KOG2106 Uncharacterized conser 100.0 2.7E-31 5.9E-36 270.5 48.1 523 395-1054 70-625 (626)
44 KOG0265 U5 snRNP-specific prot 100.0 1.2E-33 2.6E-38 269.9 28.3 287 385-706 42-334 (338)
45 KOG0295 WD40 repeat-containing 100.0 7.1E-34 1.5E-38 278.4 24.1 285 386-708 104-404 (406)
46 KOG0266 WD40 repeat-containing 100.0 4.6E-33 9.9E-38 314.8 32.4 294 321-646 151-454 (456)
47 KOG0293 WD40 repeat-containing 100.0 9.4E-34 2E-38 281.2 22.7 293 385-710 219-513 (519)
48 KOG0284 Polyadenylation factor 100.0 2.7E-34 5.9E-39 285.2 18.0 285 326-646 94-380 (464)
49 KOG0285 Pleiotropic regulator 100.0 8.6E-33 1.9E-37 269.4 26.2 294 385-758 146-439 (460)
50 KOG0282 mRNA splicing factor [ 100.0 3.9E-34 8.5E-39 290.8 16.9 295 316-644 202-503 (503)
51 KOG2048 WD40 repeat protein [G 100.0 9.2E-29 2E-33 262.1 54.4 551 324-959 21-601 (691)
52 KOG0645 WD40 repeat protein [G 100.0 4.9E-31 1.1E-35 248.4 32.1 293 725-1055 11-311 (312)
53 KOG0263 Transcription initiati 100.0 2.5E-32 5.4E-37 295.4 26.2 247 389-648 377-651 (707)
54 KOG0281 Beta-TrCP (transducin 100.0 4E-33 8.6E-38 270.3 15.7 277 327-651 196-482 (499)
55 cd00200 WD40 WD40 domain, foun 100.0 7.6E-31 1.6E-35 285.3 35.8 287 322-644 3-289 (289)
56 KOG0284 Polyadenylation factor 100.0 3.3E-32 7.2E-37 270.4 17.6 282 390-710 96-380 (464)
57 KOG0266 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 295.4 32.3 291 388-710 157-454 (456)
58 KOG0282 mRNA splicing factor [ 100.0 3.8E-32 8.3E-37 276.4 17.1 290 385-708 209-503 (503)
59 KOG0316 Conserved WD40 repeat- 100.0 9E-31 2E-35 240.9 23.3 269 384-670 11-282 (307)
60 KOG0281 Beta-TrCP (transducin 100.0 6.4E-32 1.4E-36 261.9 14.6 275 390-716 197-483 (499)
61 KOG0278 Serine/threonine kinas 100.0 4.3E-31 9.3E-36 245.1 18.5 290 323-651 9-302 (334)
62 KOG1445 Tumor-specific antigen 100.0 2.5E-29 5.3E-34 262.2 33.0 690 319-1062 70-851 (1012)
63 PLN00181 protein SPA1-RELATED; 100.0 4.3E-29 9.3E-34 305.7 39.0 294 324-645 479-792 (793)
64 cd00200 WD40 WD40 domain, foun 100.0 1.1E-28 2.4E-33 268.2 35.7 285 386-708 5-289 (289)
65 KOG1407 WD40 repeat protein [F 100.0 5.3E-29 1.2E-33 233.3 26.8 279 322-637 14-293 (313)
66 KOG0641 WD40 repeat protein [G 100.0 4.3E-28 9.3E-33 221.4 31.8 310 318-646 23-349 (350)
67 KOG0310 Conserved WD40 repeat- 100.0 2.7E-29 5.9E-34 256.4 26.4 285 325-646 24-309 (487)
68 KOG0288 WD40 repeat protein Ti 100.0 2.1E-30 4.5E-35 258.3 17.8 297 314-643 161-458 (459)
69 PLN00181 protein SPA1-RELATED; 100.0 5E-28 1.1E-32 296.3 41.0 322 350-757 457-792 (793)
70 KOG0640 mRNA cleavage stimulat 100.0 1E-28 2.2E-33 236.3 26.7 312 322-646 106-426 (430)
71 KOG0278 Serine/threonine kinas 100.0 1.4E-29 3E-34 235.1 16.8 287 386-714 10-301 (334)
72 KOG0313 Microtubule binding pr 100.0 2.9E-28 6.3E-33 240.5 26.2 283 325-646 102-418 (423)
73 KOG0275 Conserved WD40 repeat- 100.0 2.6E-29 5.6E-34 241.5 18.3 289 388-708 211-507 (508)
74 KOG0973 Histone transcription 100.0 2.6E-28 5.6E-33 273.9 28.2 306 327-648 12-357 (942)
75 KOG0643 Translation initiation 100.0 1.1E-27 2.5E-32 225.0 27.8 286 385-710 5-317 (327)
76 KOG0643 Translation initiation 100.0 1.4E-27 3E-32 224.5 26.8 286 324-647 6-318 (327)
77 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-26 2.6E-31 225.2 33.4 287 324-646 10-303 (311)
78 KOG0283 WD40 repeat-containing 100.0 3E-28 6.6E-33 266.6 24.4 310 319-648 257-578 (712)
79 PTZ00421 coronin; Provisional 100.0 1.3E-26 2.9E-31 259.8 36.8 289 326-627 18-314 (493)
80 KOG0274 Cdc4 and related F-box 100.0 3.1E-27 6.7E-32 264.5 29.9 284 326-654 206-490 (537)
81 KOG0640 mRNA cleavage stimulat 100.0 9.5E-28 2.1E-32 229.8 21.5 307 616-1002 112-426 (430)
82 KOG1446 Histone H3 (Lys4) meth 100.0 5E-26 1.1E-30 220.9 32.7 271 386-669 10-286 (311)
83 KOG0772 Uncharacterized conser 100.0 2.7E-27 5.8E-32 242.2 23.3 309 313-646 152-487 (641)
84 KOG0277 Peroxisomal targeting 100.0 3E-27 6.4E-32 220.6 21.6 285 331-645 11-308 (311)
85 KOG0305 Anaphase promoting com 100.0 8.2E-27 1.8E-31 249.6 28.0 279 331-648 180-463 (484)
86 KOG0973 Histone transcription 100.0 6.9E-27 1.5E-31 262.5 28.0 306 727-1060 12-360 (942)
87 KOG0299 U3 snoRNP-associated p 100.0 8E-27 1.7E-31 236.4 25.5 293 321-635 135-444 (479)
88 KOG0310 Conserved WD40 repeat- 100.0 7.7E-27 1.7E-31 238.6 25.2 282 727-1054 25-308 (487)
89 KOG0647 mRNA export protein (c 100.0 3.2E-26 7E-31 219.4 26.6 276 327-635 26-312 (347)
90 KOG0313 Microtubule binding pr 100.0 1.3E-26 2.9E-31 228.8 24.7 280 388-709 103-417 (423)
91 PTZ00420 coronin; Provisional 100.0 2E-25 4.4E-30 250.5 37.2 237 386-628 70-318 (568)
92 KOG1407 WD40 repeat protein [F 100.0 6.8E-26 1.5E-30 212.5 26.9 254 386-654 16-269 (313)
93 KOG0301 Phospholipase A2-activ 99.9 7.5E-26 1.6E-30 240.4 27.6 284 319-648 5-290 (745)
94 KOG0283 WD40 repeat-containing 99.9 6E-26 1.3E-30 248.7 26.8 277 726-1005 265-579 (712)
95 KOG0300 WD40 repeat-containing 99.9 3.8E-26 8.2E-31 219.3 21.9 330 318-711 138-477 (481)
96 KOG0288 WD40 repeat protein Ti 99.9 8.3E-27 1.8E-31 232.7 17.8 285 386-708 171-459 (459)
97 PTZ00421 coronin; Provisional 99.9 5.6E-25 1.2E-29 246.7 33.8 270 389-668 19-313 (493)
98 KOG0274 Cdc4 and related F-box 99.9 1.4E-25 3E-30 251.3 27.8 280 388-715 206-487 (537)
99 KOG0772 Uncharacterized conser 99.9 8.5E-26 1.9E-30 231.2 23.5 291 386-708 163-485 (641)
100 KOG1963 WD40 repeat protein [G 99.9 2.6E-23 5.5E-28 228.7 44.5 568 386-1058 12-653 (792)
101 KOG0308 Conserved WD40 repeat- 99.9 3.4E-26 7.5E-31 241.0 20.5 242 395-648 29-287 (735)
102 KOG0308 Conserved WD40 repeat- 99.9 7E-26 1.5E-30 238.7 21.6 352 326-710 19-393 (735)
103 KOG0299 U3 snoRNP-associated p 99.9 3.9E-25 8.4E-30 224.3 26.1 250 386-648 138-412 (479)
104 KOG0647 mRNA export protein (c 99.9 5.4E-25 1.2E-29 211.1 25.2 274 387-673 24-308 (347)
105 KOG0268 Sof1-like rRNA process 99.9 1.6E-26 3.5E-31 226.6 15.1 293 319-651 57-350 (433)
106 KOG0294 WD40 repeat-containing 99.9 1.2E-24 2.5E-29 210.0 27.5 241 793-1057 40-283 (362)
107 KOG0289 mRNA splicing factor [ 99.9 9E-25 2E-29 219.4 27.8 282 329-645 220-505 (506)
108 KOG2096 WD40 repeat protein [G 99.9 7.6E-25 1.7E-29 211.0 25.4 313 651-1004 79-404 (420)
109 KOG0641 WD40 repeat protein [G 99.9 8.9E-24 1.9E-28 193.3 30.3 299 387-758 29-349 (350)
110 KOG0268 Sof1-like rRNA process 99.9 6.6E-26 1.4E-30 222.3 16.1 284 430-759 61-346 (433)
111 KOG0289 mRNA splicing factor [ 99.9 1.4E-24 3.1E-29 217.9 25.5 281 391-708 220-504 (506)
112 KOG0277 Peroxisomal targeting 99.9 5.4E-25 1.2E-29 205.6 20.5 283 394-709 12-308 (311)
113 KOG0305 Anaphase promoting com 99.9 1E-24 2.2E-29 233.6 24.8 274 394-710 181-461 (484)
114 KOG0294 WD40 repeat-containing 99.9 5.3E-24 1.1E-28 205.5 25.7 272 405-713 4-284 (362)
115 KOG1274 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 213.3 49.5 280 325-643 10-297 (933)
116 KOG1036 Mitotic spindle checkp 99.9 1.2E-23 2.6E-28 203.1 27.1 270 328-636 13-294 (323)
117 KOG1332 Vesicle coat complex C 99.9 9.8E-25 2.1E-29 202.7 17.9 253 385-647 6-287 (299)
118 KOG1445 Tumor-specific antigen 99.9 2.6E-23 5.7E-28 217.5 30.6 216 385-606 74-297 (1012)
119 PTZ00420 coronin; Provisional 99.9 3.9E-23 8.5E-28 232.2 34.2 247 408-669 50-317 (568)
120 KOG2096 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 201.0 26.7 307 473-866 80-400 (420)
121 KOG1963 WD40 repeat protein [G 99.9 8.5E-22 1.8E-26 216.8 42.7 514 433-1061 14-589 (792)
122 KOG0301 Phospholipase A2-activ 99.9 6E-24 1.3E-28 226.1 24.2 278 386-710 10-288 (745)
123 KOG0300 WD40 repeat-containing 99.9 1.9E-23 4E-28 200.9 23.6 319 614-1004 146-478 (481)
124 KOG0639 Transducin-like enhanc 99.9 5.2E-24 1.1E-28 217.1 19.9 287 326-645 417-703 (705)
125 KOG1274 WD40 repeat protein [G 99.9 4.7E-20 1E-24 203.2 51.8 277 387-680 10-292 (933)
126 KOG0264 Nucleosome remodeling 99.9 1.1E-23 2.3E-28 214.5 21.6 266 324-603 120-405 (422)
127 KOG2055 WD40 repeat protein [G 99.9 7.1E-23 1.5E-27 207.7 24.8 288 328-646 213-512 (514)
128 KOG1332 Vesicle coat complex C 99.9 2.3E-23 5E-28 193.7 19.0 254 324-602 7-286 (299)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-21 4.6E-26 212.5 36.9 289 343-667 3-299 (300)
130 KOG1273 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 194.9 23.8 300 315-648 12-324 (405)
131 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 206.7 24.2 291 344-669 10-330 (476)
132 KOG4283 Transcription-coupled 99.9 4.7E-22 1E-26 189.7 25.7 320 325-710 40-365 (397)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.1E-21 1.5E-25 208.3 39.2 279 585-1011 2-288 (300)
134 KOG1538 Uncharacterized conser 99.9 2.6E-21 5.6E-26 203.9 32.2 456 437-955 14-520 (1081)
135 KOG1036 Mitotic spindle checkp 99.9 9E-22 1.9E-26 190.2 26.0 268 389-674 12-290 (323)
136 KOG2055 WD40 repeat protein [G 99.9 5.2E-22 1.1E-26 201.4 25.5 290 617-1002 214-512 (514)
137 KOG1273 WD40 repeat protein [G 99.9 3E-22 6.5E-27 193.0 22.5 282 393-710 26-322 (405)
138 KOG0646 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 204.3 21.4 255 341-627 51-330 (476)
139 KOG0639 Transducin-like enhanc 99.9 4.5E-22 9.7E-27 203.1 20.8 283 521-867 417-703 (705)
140 KOG4328 WD40 protein [Function 99.9 2E-21 4.3E-26 197.2 24.7 304 320-646 178-495 (498)
141 KOG1538 Uncharacterized conser 99.9 3.7E-20 8.1E-25 195.3 34.8 273 330-647 14-294 (1081)
142 KOG0650 WD40 repeat nucleolar 99.9 1.5E-21 3.3E-26 203.9 24.2 323 311-707 383-732 (733)
143 KOG0264 Nucleosome remodeling 99.9 1.4E-21 3E-26 199.2 22.9 253 386-647 120-405 (422)
144 KOG4283 Transcription-coupled 99.9 6.3E-21 1.4E-25 182.1 25.4 304 727-1054 42-364 (397)
145 KOG0650 WD40 repeat nucleolar 99.9 1.2E-21 2.6E-26 204.7 22.3 324 383-755 393-732 (733)
146 KOG0267 Microtubule severing p 99.9 5.4E-23 1.2E-27 219.6 10.6 236 386-637 24-259 (825)
147 KOG0269 WD40 repeat-containing 99.9 3.3E-21 7.1E-26 207.9 19.7 242 733-1004 92-342 (839)
148 KOG0267 Microtubule severing p 99.9 3.7E-22 8E-27 213.3 10.3 239 322-594 22-260 (825)
149 KOG1009 Chromatin assembly com 99.9 6E-20 1.3E-24 184.0 24.1 309 323-650 9-376 (434)
150 KOG0321 WD40 repeat-containing 99.9 2.3E-20 5E-25 197.0 22.1 293 334-648 55-393 (720)
151 KOG1034 Transcriptional repres 99.9 1.2E-19 2.7E-24 176.4 23.0 293 324-646 34-383 (385)
152 KOG2445 Nuclear pore complex c 99.9 2.4E-19 5.1E-24 173.0 24.7 268 325-613 10-332 (361)
153 KOG2445 Nuclear pore complex c 99.9 2.7E-19 5.8E-24 172.6 24.5 256 386-647 9-319 (361)
154 KOG0270 WD40 repeat-containing 99.8 3E-20 6.5E-25 188.3 18.8 243 402-652 192-455 (463)
155 KOG0321 WD40 repeat-containing 99.8 1E-19 2.3E-24 192.1 23.5 287 741-1056 65-392 (720)
156 KOG0269 WD40 repeat-containing 99.8 2.6E-20 5.6E-25 201.1 18.6 284 391-706 40-336 (839)
157 KOG0307 Vesicle coat complex C 99.8 1.1E-20 2.5E-25 213.7 15.1 298 331-649 9-330 (1049)
158 COG2319 FOG: WD40 repeat [Gene 99.8 3.9E-17 8.5E-22 189.8 44.8 369 323-759 60-443 (466)
159 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.6E-21 185.7 48.6 372 431-911 61-443 (466)
160 KOG4378 Nuclear protein COP1 [ 99.8 5.5E-19 1.2E-23 180.6 22.0 291 349-670 10-305 (673)
161 KOG0302 Ribosome Assembly prot 99.8 6.3E-19 1.4E-23 174.7 21.5 263 324-599 147-435 (440)
162 KOG4378 Nuclear protein COP1 [ 99.8 6.4E-19 1.4E-23 180.1 22.1 293 588-984 6-305 (673)
163 KOG4328 WD40 protein [Function 99.8 7.1E-19 1.5E-23 178.9 21.9 312 644-1003 172-496 (498)
164 KOG4497 Uncharacterized conser 99.8 1.6E-18 3.4E-23 168.4 22.8 407 395-903 13-425 (447)
165 KOG1034 Transcriptional repres 99.8 1.1E-18 2.4E-23 169.9 21.5 325 384-757 32-382 (385)
166 KOG1912 WD40 repeat protein [G 99.8 2.7E-17 5.9E-22 177.3 34.1 605 329-1007 16-746 (1062)
167 KOG1524 WD40 repeat-containing 99.8 1.7E-17 3.7E-22 171.5 29.9 499 388-1058 12-526 (737)
168 KOG0303 Actin-binding protein 99.8 3.7E-18 8.1E-23 170.1 23.2 237 385-627 76-320 (472)
169 KOG1009 Chromatin assembly com 99.8 1.8E-17 3.9E-22 166.4 26.1 302 728-1058 13-375 (434)
170 KOG0644 Uncharacterized conser 99.8 1.7E-19 3.8E-24 195.5 11.3 286 320-651 182-473 (1113)
171 KOG1912 WD40 repeat protein [G 99.8 1.4E-16 3.1E-21 171.9 33.2 562 391-1058 16-659 (1062)
172 KOG2919 Guanine nucleotide-bin 99.8 1.2E-17 2.5E-22 162.3 22.5 289 332-637 53-361 (406)
173 KOG0270 WD40 repeat-containing 99.8 3.8E-18 8.2E-23 173.2 19.3 252 340-607 192-454 (463)
174 KOG0302 Ribosome Assembly prot 99.8 1.4E-17 2.9E-22 165.3 20.9 248 386-643 147-435 (440)
175 KOG2919 Guanine nucleotide-bin 99.8 2.9E-17 6.2E-22 159.6 22.1 190 799-993 161-361 (406)
176 KOG4497 Uncharacterized conser 99.8 5.1E-17 1.1E-21 158.1 23.6 337 529-994 14-424 (447)
177 KOG1334 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 177.4 13.2 302 319-648 133-468 (559)
178 KOG0303 Actin-binding protein 99.8 3.9E-17 8.5E-22 162.9 22.2 237 401-650 43-298 (472)
179 KOG0307 Vesicle coat complex C 99.8 2.1E-18 4.5E-23 195.6 13.9 250 330-605 66-330 (1049)
180 KOG0322 G-protein beta subunit 99.8 6.1E-18 1.3E-22 159.7 14.2 254 317-601 3-322 (323)
181 KOG1524 WD40 repeat-containing 99.8 8.5E-16 1.8E-20 159.1 30.9 497 326-960 12-524 (737)
182 KOG0642 Cell-cycle nuclear pro 99.8 7.3E-18 1.6E-22 176.4 15.2 262 385-657 289-572 (577)
183 KOG0649 WD40 repeat protein [G 99.8 4.4E-16 9.5E-21 145.3 24.6 278 330-643 12-313 (325)
184 KOG1007 WD repeat protein TSSC 99.7 1.8E-16 3.9E-21 151.7 19.8 259 323-602 58-361 (370)
185 KOG4227 WD40 repeat protein [G 99.7 1.4E-16 3E-21 158.2 19.8 302 320-646 48-387 (609)
186 KOG0322 G-protein beta subunit 99.7 7E-17 1.5E-21 152.6 16.7 308 562-909 7-322 (323)
187 KOG0644 Uncharacterized conser 99.7 7.3E-18 1.6E-22 183.1 11.6 288 560-913 181-471 (1113)
188 KOG0290 Conserved WD40 repeat- 99.7 6.7E-16 1.4E-20 148.0 23.2 289 321-642 38-361 (364)
189 KOG0642 Cell-cycle nuclear pro 99.7 4.3E-17 9.4E-22 170.6 16.4 270 321-613 287-572 (577)
190 KOG4227 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 156.4 20.4 294 386-709 52-386 (609)
191 KOG0649 WD40 repeat protein [G 99.7 2.6E-15 5.6E-20 140.2 25.5 286 730-1053 12-314 (325)
192 KOG1188 WD40 repeat protein [G 99.7 1.4E-16 3E-21 156.5 18.0 293 451-758 42-346 (376)
193 KOG1188 WD40 repeat protein [G 99.7 3.3E-16 7.2E-21 153.9 19.7 277 343-647 42-347 (376)
194 KOG1310 WD40 repeat protein [G 99.7 4.1E-16 8.8E-21 161.9 20.9 245 430-719 45-312 (758)
195 PRK11028 6-phosphogluconolacto 99.7 1.3E-14 2.8E-19 159.8 34.2 275 342-646 3-304 (330)
196 KOG2110 Uncharacterized conser 99.7 1.6E-14 3.4E-19 143.9 30.8 241 391-648 6-250 (391)
197 KOG2110 Uncharacterized conser 99.7 5.3E-15 1.2E-19 147.3 26.3 241 796-1058 5-251 (391)
198 KOG1007 WD repeat protein TSSC 99.7 1.9E-15 4.1E-20 144.8 21.9 182 799-1002 173-361 (370)
199 PRK11028 6-phosphogluconolacto 99.7 2.8E-14 6.1E-19 157.1 33.4 256 320-602 27-304 (330)
200 KOG0771 Prolactin regulatory e 99.7 4.1E-16 8.9E-21 158.3 14.5 198 800-1003 148-355 (398)
201 KOG1517 Guanine nucleotide bin 99.7 1.1E-14 2.3E-19 163.0 26.6 198 804-1005 1173-1384(1387)
202 KOG1587 Cytoplasmic dynein int 99.7 1.3E-14 2.9E-19 161.5 25.9 250 389-648 241-518 (555)
203 PRK01742 tolB translocation pr 99.7 7.3E-15 1.6E-19 166.5 24.2 235 350-627 183-426 (429)
204 KOG1832 HIV-1 Vpr-binding prot 99.7 8.6E-17 1.9E-21 175.5 7.8 312 156-633 1004-1318(1516)
205 KOG1240 Protein kinase contain 99.7 3.6E-14 7.9E-19 161.6 28.7 256 386-649 1044-1337(1431)
206 KOG0771 Prolactin regulatory e 99.7 2E-15 4.3E-20 153.4 16.0 197 841-1056 148-355 (398)
207 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-13 3.3E-18 149.7 31.5 320 496-916 9-353 (369)
208 COG4946 Uncharacterized protei 99.6 2E-11 4.4E-16 125.4 44.0 416 340-900 50-508 (668)
209 PF02239 Cytochrom_D1: Cytochr 99.6 1.6E-12 3.4E-17 141.8 38.3 331 449-877 6-356 (369)
210 KOG1517 Guanine nucleotide bin 99.6 3.2E-14 6.9E-19 159.3 24.5 297 326-648 1062-1383(1387)
211 KOG2111 Uncharacterized conser 99.6 7.7E-13 1.7E-17 129.5 30.9 241 392-648 7-258 (346)
212 KOG1587 Cytoplasmic dynein int 99.6 3.7E-14 8E-19 157.9 24.7 261 320-603 235-517 (555)
213 KOG0290 Conserved WD40 repeat- 99.6 2.2E-14 4.7E-19 137.8 18.7 247 794-1051 94-361 (364)
214 KOG1240 Protein kinase contain 99.6 8.9E-14 1.9E-18 158.5 26.6 274 318-607 1038-1339(1431)
215 PRK01742 tolB translocation pr 99.6 2.2E-14 4.9E-19 162.5 21.6 230 315-583 190-426 (429)
216 KOG2139 WD40 repeat protein [G 99.6 3.4E-13 7.4E-18 133.7 26.4 288 330-646 100-431 (445)
217 KOG2041 WD40 repeat protein [G 99.6 1.3E-12 2.9E-17 140.1 32.7 518 389-1001 13-618 (1189)
218 KOG1334 WD40 repeat protein [G 99.6 5.8E-15 1.3E-19 151.8 14.4 296 386-710 138-466 (559)
219 KOG1523 Actin-related protein 99.6 1.6E-13 3.5E-18 134.1 22.3 229 390-631 10-264 (361)
220 KOG1523 Actin-related protein 99.6 1.6E-13 3.6E-18 134.0 21.5 241 324-593 6-269 (361)
221 KOG1310 WD40 repeat protein [G 99.6 1.3E-14 2.8E-19 150.9 14.3 245 320-610 42-311 (758)
222 KOG2321 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 142.5 23.8 284 326-648 49-345 (703)
223 PF04762 IKI3: IKI3 family; I 99.6 6.4E-09 1.4E-13 126.2 65.0 537 389-1007 74-689 (928)
224 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-13 3.7E-18 142.8 21.9 169 805-982 182-384 (636)
225 KOG1272 WD40-repeat-containing 99.6 9.3E-15 2E-19 149.3 11.5 273 330-643 131-406 (545)
226 KOG0974 WD-repeat protein WDR6 99.6 5.1E-11 1.1E-15 135.0 42.1 276 330-648 9-290 (967)
227 KOG2111 Uncharacterized conser 99.6 9.5E-13 2.1E-17 128.8 24.6 238 798-1058 7-259 (346)
228 PRK03629 tolB translocation pr 99.6 1.2E-12 2.5E-17 148.0 29.4 238 351-626 179-427 (429)
229 KOG0974 WD-repeat protein WDR6 99.6 1.8E-11 3.9E-16 138.7 37.1 200 330-559 89-290 (967)
230 PRK05137 tolB translocation pr 99.6 1.7E-12 3.6E-17 148.0 29.4 237 351-626 182-432 (435)
231 KOG2139 WD40 repeat protein [G 99.6 2.3E-12 5E-17 127.9 25.3 259 729-1002 141-431 (445)
232 PRK03629 tolB translocation pr 99.5 8.7E-13 1.9E-17 149.0 25.2 233 314-582 184-427 (429)
233 COG4946 Uncharacterized protei 99.5 8.5E-10 1.9E-14 113.7 43.6 534 310-1003 60-655 (668)
234 KOG1272 WD40-repeat-containing 99.5 3.1E-14 6.8E-19 145.5 10.6 268 619-997 132-404 (545)
235 PRK04922 tolB translocation pr 99.5 1.8E-12 4E-17 147.4 25.7 238 351-626 184-432 (433)
236 PRK04922 tolB translocation pr 99.5 1.2E-12 2.6E-17 148.9 24.1 232 314-582 189-432 (433)
237 KOG2394 WD40 protein DMR-N9 [G 99.5 8.9E-13 1.9E-17 137.5 20.0 278 330-651 125-457 (636)
238 COG5354 Uncharacterized protei 99.5 1.1E-11 2.3E-16 129.1 27.6 282 328-648 32-350 (561)
239 PF10282 Lactonase: Lactonase, 99.5 2.3E-10 5E-15 125.7 39.9 210 798-1009 88-331 (345)
240 KOG2041 WD40 repeat protein [G 99.5 1.5E-10 3.2E-15 124.8 36.4 541 330-962 16-622 (1189)
241 PRK02889 tolB translocation pr 99.5 2.3E-12 5E-17 145.9 24.6 233 315-583 182-425 (427)
242 KOG3881 Uncharacterized conser 99.5 2.3E-12 5E-17 129.7 21.4 272 328-626 55-341 (412)
243 KOG2315 Predicted translation 99.5 3E-11 6.6E-16 127.6 30.6 288 328-654 34-352 (566)
244 PRK02889 tolB translocation pr 99.5 3.1E-12 6.7E-17 144.9 25.5 223 386-626 191-424 (427)
245 KOG2315 Predicted translation 99.5 5.2E-11 1.1E-15 125.9 31.2 333 523-911 34-391 (566)
246 PRK05137 tolB translocation pr 99.5 6.1E-12 1.3E-16 143.4 25.1 232 314-582 187-432 (435)
247 PF04762 IKI3: IKI3 family; I 99.5 8.4E-08 1.8E-12 116.6 60.3 519 391-1055 22-639 (928)
248 COG5354 Uncharacterized protei 99.5 2.8E-10 6E-15 118.8 32.5 366 506-994 15-421 (561)
249 COG2706 3-carboxymuconate cycl 99.4 5.9E-10 1.3E-14 112.5 33.1 281 701-1007 15-328 (346)
250 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.7E-09 3.8E-14 114.6 37.2 204 801-1011 109-339 (352)
251 KOG1409 Uncharacterized conser 99.4 4.1E-11 8.8E-16 118.6 21.9 340 560-1003 15-395 (404)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.9E-10 1.3E-14 118.2 32.1 270 351-654 27-338 (352)
253 KOG2321 WD40 repeat protein [G 99.4 5.9E-11 1.3E-15 125.1 23.8 283 433-758 49-343 (703)
254 PRK01029 tolB translocation pr 99.4 2.5E-10 5.4E-15 128.4 28.9 228 386-628 180-426 (428)
255 KOG2314 Translation initiation 99.4 6.9E-10 1.5E-14 116.7 28.6 318 525-994 212-559 (698)
256 PRK01029 tolB translocation pr 99.4 1.6E-10 3.4E-15 130.0 26.1 235 321-584 177-426 (428)
257 PRK00178 tolB translocation pr 99.4 1.3E-10 2.9E-15 132.9 26.2 229 319-582 189-427 (430)
258 PF10282 Lactonase: Lactonase, 99.4 7.4E-09 1.6E-13 113.9 38.2 248 391-646 37-322 (345)
259 KOG1354 Serine/threonine prote 99.3 2.3E-10 5E-15 113.2 22.6 357 435-957 25-432 (433)
260 PRK04792 tolB translocation pr 99.3 1.1E-10 2.4E-15 132.4 24.0 227 321-582 210-446 (448)
261 PRK00178 tolB translocation pr 99.3 4.1E-10 8.9E-15 128.9 28.8 223 386-626 194-427 (430)
262 COG2706 3-carboxymuconate cycl 99.3 4E-09 8.7E-14 106.6 31.8 252 795-1061 38-327 (346)
263 PRK04792 tolB translocation pr 99.3 4.2E-10 9.2E-15 127.7 28.4 223 386-626 213-446 (448)
264 KOG2314 Translation initiation 99.3 5.7E-10 1.2E-14 117.3 26.6 333 392-868 212-573 (698)
265 KOG1354 Serine/threonine prote 99.3 8.3E-11 1.8E-15 116.2 19.2 266 327-605 24-362 (433)
266 TIGR02800 propeller_TolB tol-p 99.3 4.1E-10 8.9E-15 129.0 27.3 210 386-611 185-405 (417)
267 TIGR02800 propeller_TolB tol-p 99.3 2.2E-10 4.7E-15 131.3 24.5 214 319-566 180-405 (417)
268 PF08662 eIF2A: Eukaryotic tra 99.3 1.8E-10 3.9E-15 113.8 20.4 162 394-564 9-185 (194)
269 KOG1409 Uncharacterized conser 99.3 2.9E-11 6.3E-16 119.6 14.2 358 470-869 15-395 (404)
270 KOG3881 Uncharacterized conser 99.3 2.5E-10 5.3E-15 115.3 21.0 251 389-654 54-328 (412)
271 KOG4547 WD40 repeat-containing 99.3 7.3E-10 1.6E-14 118.4 23.0 194 399-603 2-221 (541)
272 PF08662 eIF2A: Eukaryotic tra 99.3 5.3E-10 1.2E-14 110.5 20.3 161 439-611 9-187 (194)
273 TIGR03300 assembly_YfgL outer 99.2 1.9E-08 4.2E-13 113.0 32.3 183 451-648 67-261 (377)
274 KOG4547 WD40 repeat-containing 99.2 3.4E-09 7.5E-14 113.4 22.8 189 806-1004 3-222 (541)
275 TIGR03300 assembly_YfgL outer 99.1 8.6E-08 1.9E-12 107.8 31.8 267 344-658 68-350 (377)
276 KOG0280 Uncharacterized conser 99.1 1.3E-08 2.8E-13 99.1 19.2 252 329-604 70-335 (339)
277 PRK04043 tolB translocation pr 99.1 3.9E-08 8.5E-13 109.8 25.6 206 321-560 181-403 (419)
278 PLN02919 haloacid dehalogenase 99.0 2E-07 4.3E-12 115.9 32.0 260 732-1006 571-892 (1057)
279 PF15492 Nbas_N: Neuroblastoma 99.0 1.5E-07 3.2E-12 92.6 23.5 205 802-1011 3-268 (282)
280 PLN02919 haloacid dehalogenase 99.0 3E-07 6.5E-12 114.3 32.3 255 800-1058 571-891 (1057)
281 KOG3617 WD40 and TPR repeat-co 99.0 1.7E-08 3.6E-13 111.4 18.5 507 330-964 17-590 (1416)
282 KOG4190 Uncharacterized conser 99.0 6.5E-09 1.4E-13 108.9 13.2 205 472-708 728-946 (1034)
283 KOG1064 RAVE (regulator of V-A 99.0 2.6E-09 5.6E-14 127.2 11.4 201 386-612 2204-2408(2439)
284 KOG4190 Uncharacterized conser 99.0 4.4E-09 9.5E-14 110.2 11.8 294 320-642 727-1032(1034)
285 KOG0280 Uncharacterized conser 99.0 1.4E-07 3.1E-12 92.1 21.2 228 351-605 46-287 (339)
286 PRK04043 tolB translocation pr 98.9 8.1E-07 1.8E-11 99.3 28.8 197 392-604 189-402 (419)
287 KOG1064 RAVE (regulator of V-A 98.9 8.1E-09 1.8E-13 123.1 12.7 226 402-655 2180-2407(2439)
288 KOG3914 WD repeat protein WDR4 98.9 2.3E-08 4.9E-13 102.2 13.5 165 330-520 64-232 (390)
289 PRK11138 outer membrane biogen 98.9 3.8E-06 8.2E-11 94.8 32.0 212 815-1054 168-393 (394)
290 KOG1897 Damage-specific DNA bi 98.9 0.00058 1.3E-08 78.7 54.3 582 326-959 304-942 (1096)
291 KOG0309 Conserved WD40 repeat- 98.9 2.2E-08 4.8E-13 109.0 12.8 223 371-603 95-340 (1081)
292 PF07433 DUF1513: Protein of u 98.8 2.1E-06 4.5E-11 87.8 26.2 183 801-992 55-276 (305)
293 KOG1897 Damage-specific DNA bi 98.8 0.00062 1.3E-08 78.5 54.2 579 397-1058 264-945 (1096)
294 KOG3617 WD40 and TPR repeat-co 98.8 1.4E-06 3E-11 96.8 25.7 340 393-814 18-373 (1416)
295 PRK11138 outer membrane biogen 98.8 5.5E-06 1.2E-10 93.5 31.7 153 451-611 71-232 (394)
296 PF07433 DUF1513: Protein of u 98.8 9.6E-06 2.1E-10 83.0 29.3 206 799-1011 7-256 (305)
297 KOG3914 WD repeat protein WDR4 98.8 6.3E-08 1.4E-12 99.0 13.1 159 841-1011 66-232 (390)
298 KOG4532 WD40-like repeat conta 98.8 7.2E-07 1.6E-11 85.9 19.1 148 393-542 161-321 (344)
299 PF15492 Nbas_N: Neuroblastoma 98.8 7.6E-06 1.6E-10 80.8 26.0 255 529-879 3-270 (282)
300 KOG2659 LisH motif-containing 98.7 4.8E-08 1E-12 93.6 9.0 160 4-177 25-204 (228)
301 KOG0309 Conserved WD40 repeat- 98.7 1E-07 2.3E-12 103.9 12.6 294 390-710 24-339 (1081)
302 COG5170 CDC55 Serine/threonine 98.7 2.6E-07 5.6E-12 90.6 13.6 259 795-1058 25-370 (460)
303 COG5170 CDC55 Serine/threonine 98.7 2.7E-07 5.8E-12 90.4 13.5 118 794-912 170-311 (460)
304 PF08450 SGL: SMP-30/Gluconola 98.7 3.6E-05 7.8E-10 80.6 30.8 220 733-990 4-243 (246)
305 KOG4714 Nucleoporin [Nuclear s 98.7 3.8E-07 8.1E-12 87.5 13.5 209 331-558 39-255 (319)
306 PF06433 Me-amine-dh_H: Methyl 98.7 2E-05 4.3E-10 81.6 26.5 207 799-1011 97-329 (342)
307 PF08450 SGL: SMP-30/Gluconola 98.7 3.8E-05 8.3E-10 80.4 29.8 220 333-591 4-244 (246)
308 PF13360 PQQ_2: PQQ-like domai 98.6 8.2E-06 1.8E-10 85.3 24.1 223 816-1062 2-237 (238)
309 PF13360 PQQ_2: PQQ-like domai 98.6 2.1E-05 4.5E-10 82.3 26.9 223 411-652 2-236 (238)
310 KOG2695 WD40 repeat protein [G 98.6 1.5E-07 3.2E-12 93.9 9.0 177 332-532 215-401 (425)
311 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.0003 6.5E-09 68.1 30.7 136 494-640 24-159 (354)
312 KOG4532 WD40-like repeat conta 98.6 7.5E-06 1.6E-10 79.1 19.7 226 401-637 83-323 (344)
313 KOG0882 Cyclophilin-related pe 98.6 1.9E-06 4.1E-11 89.2 16.3 297 727-1052 8-369 (558)
314 KOG1832 HIV-1 Vpr-binding prot 98.6 7.4E-08 1.6E-12 107.0 6.5 195 827-1055 1091-1291(1516)
315 PF06433 Me-amine-dh_H: Methyl 98.6 5.3E-05 1.1E-09 78.5 26.4 285 549-878 17-330 (342)
316 PRK02888 nitrous-oxide reducta 98.6 2.3E-05 5E-10 87.8 25.6 184 802-1003 198-405 (635)
317 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00013 2.8E-09 70.5 26.6 145 336-508 18-162 (354)
318 KOG1920 IkappaB kinase complex 98.5 0.00012 2.6E-09 86.1 31.2 243 573-914 69-326 (1265)
319 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00015 3.3E-09 80.2 31.0 259 337-636 1-300 (353)
320 PF10607 CLTH: CTLH/CRA C-term 98.5 2.8E-07 6E-12 87.0 8.1 136 31-177 4-141 (145)
321 KOG1645 RING-finger-containing 98.5 1.2E-05 2.6E-10 82.4 20.0 251 385-646 188-461 (463)
322 KOG0882 Cyclophilin-related pe 98.5 2.7E-06 5.8E-11 88.1 15.3 258 389-655 8-314 (558)
323 PRK02888 nitrous-oxide reducta 98.5 1.6E-05 3.5E-10 89.1 22.6 105 803-911 283-405 (635)
324 KOG1920 IkappaB kinase complex 98.5 4.1E-05 8.8E-10 89.8 26.1 283 327-646 67-365 (1265)
325 PF00400 WD40: WD domain, G-be 98.5 4.5E-07 9.7E-12 63.1 6.5 39 870-908 1-39 (39)
326 KOG3621 WD40 repeat-containing 98.5 3.8E-05 8.3E-10 84.9 23.5 285 327-648 32-355 (726)
327 PF00400 WD40: WD domain, G-be 98.4 6.3E-07 1.4E-11 62.3 5.7 38 319-357 2-39 (39)
328 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00038 8.2E-09 77.0 30.4 303 532-898 1-345 (353)
329 KOG1275 PAB-dependent poly(A) 98.4 6.2E-06 1.4E-10 93.0 15.6 180 807-1000 146-340 (1118)
330 KOG4714 Nucleoporin [Nuclear s 98.4 4.7E-06 1E-10 80.2 12.5 195 849-1053 100-316 (319)
331 PF14583 Pectate_lyase22: Olig 98.4 0.0012 2.6E-08 70.2 30.9 279 334-644 41-379 (386)
332 KOG2695 WD40 repeat protein [G 98.3 2.9E-06 6.3E-11 84.9 8.2 151 854-1011 228-385 (425)
333 KOG2114 Vacuolar assembly/sort 98.2 0.00021 4.5E-09 80.9 21.8 200 397-611 30-252 (933)
334 KOG1645 RING-finger-containing 98.2 0.00012 2.6E-09 75.3 18.2 250 321-602 186-461 (463)
335 cd00216 PQQ_DH Dehydrogenases 98.2 0.0018 4E-08 74.8 30.5 137 495-638 63-238 (488)
336 smart00668 CTLH C-terminal to 98.2 9.9E-07 2.1E-11 67.8 2.4 54 30-84 3-56 (58)
337 KOG1275 PAB-dependent poly(A) 98.2 3.3E-05 7.2E-10 87.4 14.9 186 451-646 149-342 (1118)
338 KOG2066 Vacuolar assembly/sort 98.1 0.0001 2.2E-09 82.7 17.5 188 838-1055 40-233 (846)
339 KOG2114 Vacuolar assembly/sort 98.1 0.00045 9.8E-09 78.3 22.1 203 802-1011 29-252 (933)
340 KOG2066 Vacuolar assembly/sort 98.1 0.00033 7.2E-09 78.8 20.2 185 731-959 42-233 (846)
341 PF14583 Pectate_lyase22: Olig 98.0 0.0074 1.6E-07 64.3 28.3 229 396-637 41-303 (386)
342 PF02897 Peptidase_S9_N: Proly 98.0 0.014 3E-07 66.6 33.3 251 330-607 125-409 (414)
343 PF11768 DUF3312: Protein of u 98.0 0.00037 8E-09 76.4 18.5 115 796-913 205-332 (545)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.045 9.8E-07 63.5 36.4 110 495-612 71-199 (527)
345 cd00216 PQQ_DH Dehydrogenases 98.0 0.0038 8.2E-08 72.2 27.6 246 344-615 113-437 (488)
346 KOG0396 Uncharacterized conser 98.0 5.2E-05 1.1E-09 77.3 10.5 165 5-183 115-297 (389)
347 PRK13616 lipoprotein LpqB; Pro 97.9 0.0017 3.7E-08 75.5 24.3 210 838-1073 350-586 (591)
348 PF08596 Lgl_C: Lethal giant l 97.9 0.0036 7.8E-08 69.0 25.3 278 730-1054 3-334 (395)
349 PF08596 Lgl_C: Lethal giant l 97.9 0.0024 5.3E-08 70.3 24.0 254 330-590 3-324 (395)
350 PF06977 SdiA-regulated: SdiA- 97.9 0.0041 9E-08 63.3 23.2 197 322-541 15-239 (248)
351 COG0823 TolB Periplasmic compo 97.9 0.00073 1.6E-08 75.1 19.3 196 319-543 183-389 (425)
352 PF11768 DUF3312: Protein of u 97.9 0.0051 1.1E-07 67.8 25.0 112 933-1057 208-331 (545)
353 PF06977 SdiA-regulated: SdiA- 97.9 0.0049 1.1E-07 62.8 23.3 216 831-1052 15-247 (248)
354 COG3490 Uncharacterized protei 97.9 0.0073 1.6E-07 59.9 22.9 256 574-908 69-346 (366)
355 PF04841 Vps16_N: Vps16, N-ter 97.8 0.011 2.4E-07 66.3 27.4 199 801-1012 33-256 (410)
356 COG0823 TolB Periplasmic compo 97.8 0.0027 5.8E-08 70.8 22.1 195 431-637 188-390 (425)
357 PF04053 Coatomer_WDAD: Coatom 97.8 0.0038 8.2E-08 69.8 23.0 223 386-647 28-263 (443)
358 PF02897 Peptidase_S9_N: Proly 97.8 0.017 3.7E-07 65.9 29.1 248 392-650 125-408 (414)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.037 8E-07 64.3 30.6 291 344-656 72-500 (527)
360 COG3391 Uncharacterized conser 97.7 0.012 2.7E-07 65.5 25.3 205 799-1011 76-292 (381)
361 KOG3621 WD40 repeat-containing 97.7 0.0044 9.5E-08 69.2 20.7 119 619-759 36-155 (726)
362 PF04053 Coatomer_WDAD: Coatom 97.7 0.012 2.5E-07 66.0 24.4 225 322-602 26-262 (443)
363 PRK13616 lipoprotein LpqB; Pro 97.6 0.0031 6.8E-08 73.4 19.8 186 797-996 350-562 (591)
364 COG3391 Uncharacterized conser 97.6 0.15 3.3E-06 56.9 32.5 251 392-655 32-292 (381)
365 PF04841 Vps16_N: Vps16, N-ter 97.6 0.057 1.2E-06 60.6 28.9 230 391-655 81-323 (410)
366 PF00780 CNH: CNH domain; Int 97.6 0.067 1.5E-06 57.1 27.9 231 400-656 5-265 (275)
367 COG3490 Uncharacterized protei 97.6 0.024 5.2E-07 56.4 21.3 232 800-1053 71-346 (366)
368 PF00780 CNH: CNH domain; Int 97.5 0.075 1.6E-06 56.7 27.6 229 339-613 6-266 (275)
369 COG3386 Gluconolactonase [Carb 97.4 0.036 7.9E-07 58.8 22.8 225 333-592 29-275 (307)
370 KOG1008 Uncharacterized conser 97.4 5.5E-05 1.2E-09 82.4 1.7 203 481-710 58-275 (783)
371 KOG1008 Uncharacterized conser 97.4 6.1E-05 1.3E-09 82.1 1.8 204 328-557 56-275 (783)
372 COG3386 Gluconolactonase [Carb 97.3 0.075 1.6E-06 56.4 23.7 215 441-667 30-263 (307)
373 TIGR03074 PQQ_membr_DH membran 97.3 0.82 1.8E-05 55.2 39.8 206 451-656 196-487 (764)
374 PRK10115 protease 2; Provision 97.2 0.42 9.2E-06 57.7 31.7 245 391-648 127-396 (686)
375 PF03178 CPSF_A: CPSF A subuni 97.2 0.14 3E-06 56.0 25.1 175 351-557 2-202 (321)
376 PF08553 VID27: VID27 cytoplas 97.2 0.024 5.3E-07 66.9 19.8 147 849-1002 492-647 (794)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.11 2.4E-06 57.1 22.1 83 525-613 309-409 (415)
378 KOG4441 Proteins containing BT 97.1 0.7 1.5E-05 54.3 30.3 234 343-607 287-551 (571)
379 PRK10115 protease 2; Provision 97.1 1 2.2E-05 54.5 32.4 244 330-605 128-397 (686)
380 KOG4640 Anaphase-promoting com 97.0 0.0027 6E-08 69.8 9.2 94 329-445 21-115 (665)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.24 5.2E-06 54.6 24.2 83 795-877 306-407 (415)
382 smart00320 WD40 WD40 repeats. 96.9 0.0021 4.6E-08 43.8 5.4 39 870-908 2-40 (40)
383 PF14870 PSII_BNR: Photosynthe 96.9 0.69 1.5E-05 48.9 26.0 157 834-999 141-301 (302)
384 PF10647 Gmad1: Lipoprotein Lp 96.9 0.31 6.8E-06 50.7 23.0 201 839-1065 25-244 (253)
385 PF10647 Gmad1: Lipoprotein Lp 96.8 0.14 2.9E-06 53.4 19.9 147 797-948 24-183 (253)
386 KOG4640 Anaphase-promoting com 96.8 0.0051 1.1E-07 67.8 9.6 94 837-939 20-114 (665)
387 KOG2395 Protein involved in va 96.8 0.029 6.2E-07 60.7 14.3 145 401-557 344-500 (644)
388 PF03178 CPSF_A: CPSF A subuni 96.8 0.11 2.4E-06 56.8 19.6 176 460-646 3-202 (321)
389 smart00320 WD40 WD40 repeats. 96.7 0.0033 7.1E-08 42.8 4.8 38 319-357 3-40 (40)
390 PF08553 VID27: VID27 cytoplas 96.7 0.037 8.1E-07 65.4 15.8 146 447-601 492-646 (794)
391 PF07995 GSDH: Glucose / Sorbo 96.6 1.5 3.2E-05 47.9 27.6 69 573-641 253-330 (331)
392 PF07995 GSDH: Glucose / Sorbo 96.6 0.99 2.1E-05 49.2 25.3 240 799-1050 4-330 (331)
393 PHA02713 hypothetical protein; 96.6 0.11 2.3E-06 61.2 18.8 203 446-659 303-546 (557)
394 PF14727 PHTB1_N: PTHB1 N-term 96.6 1.8 3.8E-05 48.1 31.5 275 739-1054 36-359 (418)
395 PHA02713 hypothetical protein; 96.5 0.16 3.4E-06 59.8 20.0 227 818-1071 273-547 (557)
396 KOG4441 Proteins containing BT 96.5 0.25 5.4E-06 58.0 21.1 236 401-650 284-550 (571)
397 PF05096 Glu_cyclase_2: Glutam 96.5 1.2 2.6E-05 45.4 22.7 184 799-991 47-249 (264)
398 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.13 2.9E-06 44.1 13.3 102 331-462 2-109 (111)
399 PRK13684 Ycf48-like protein; P 96.4 1.9 4.2E-05 47.0 30.1 157 880-1055 172-331 (334)
400 KOG2395 Protein involved in va 96.4 0.07 1.5E-06 57.9 14.1 146 852-1002 348-500 (644)
401 KOG2079 Vacuolar assembly/sort 96.4 0.054 1.2E-06 63.9 14.3 104 401-510 98-202 (1206)
402 COG3204 Uncharacterized protei 96.3 1.5 3.2E-05 44.8 23.4 176 834-1011 82-271 (316)
403 PF14727 PHTB1_N: PTHB1 N-term 96.3 2.3 5E-05 47.2 33.0 281 338-651 34-365 (418)
404 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.19 4.2E-06 43.2 13.6 101 883-998 2-110 (111)
405 PF14870 PSII_BNR: Photosynthe 96.3 2 4.3E-05 45.5 30.2 230 798-1052 63-301 (302)
406 COG3204 Uncharacterized protei 96.1 1.5 3.3E-05 44.7 20.8 205 727-957 84-310 (316)
407 PF15390 DUF4613: Domain of un 96.1 3.4 7.4E-05 46.4 27.4 59 934-992 342-404 (671)
408 PF05694 SBP56: 56kDa selenium 95.9 0.89 1.9E-05 49.4 19.1 190 801-991 134-392 (461)
409 PF05694 SBP56: 56kDa selenium 95.7 1.5 3.3E-05 47.6 20.1 253 492-748 86-393 (461)
410 PRK13684 Ycf48-like protein; P 95.6 3.5 7.5E-05 45.1 23.6 154 837-1000 172-329 (334)
411 PF12894 Apc4_WD40: Anaphase-p 95.6 0.03 6.5E-07 39.9 4.9 34 328-363 11-44 (47)
412 PF05096 Glu_cyclase_2: Glutam 95.6 3.2 6.9E-05 42.4 23.1 194 729-950 45-250 (264)
413 PF12894 Apc4_WD40: Anaphase-p 95.6 0.056 1.2E-06 38.5 6.1 31 390-420 11-41 (47)
414 KOG4499 Ca2+-binding protein R 95.5 2.1 4.6E-05 41.9 18.3 137 435-583 108-264 (310)
415 TIGR03074 PQQ_membr_DH membran 95.5 2.5 5.4E-05 51.2 23.5 160 451-611 262-486 (764)
416 PF15390 DUF4613: Domain of un 95.5 0.27 5.8E-06 54.7 13.8 161 838-1006 20-190 (671)
417 KOG2079 Vacuolar assembly/sort 95.3 0.058 1.3E-06 63.6 8.5 103 494-602 100-203 (1206)
418 KOG3630 Nuclear pore complex, 95.2 0.4 8.8E-06 57.2 15.0 248 796-1081 100-363 (1405)
419 KOG1898 Splicing factor 3b, su 95.2 10 0.00022 45.8 32.6 105 802-910 939-1048(1205)
420 KOG2444 WD40 repeat protein [G 95.1 0.059 1.3E-06 52.2 6.7 102 810-911 72-178 (238)
421 KOG4499 Ca2+-binding protein R 95.0 4 8.7E-05 40.0 19.2 207 452-667 30-262 (310)
422 PF12234 Rav1p_C: RAVE protein 95.0 0.59 1.3E-05 54.2 15.4 112 437-556 31-155 (631)
423 PF10168 Nup88: Nuclear pore c 95.0 6.8 0.00015 47.1 24.7 94 795-911 83-180 (717)
424 TIGR02604 Piru_Ver_Nterm putat 94.7 8.2 0.00018 42.9 23.6 139 797-947 14-200 (367)
425 PF12234 Rav1p_C: RAVE protein 94.7 0.94 2E-05 52.5 16.0 124 833-958 25-155 (631)
426 PHA03098 kelch-like protein; P 94.4 2.1 4.4E-05 50.8 19.0 154 492-650 342-515 (534)
427 KOG2444 WD40 repeat protein [G 94.3 0.11 2.3E-06 50.6 6.4 101 344-467 73-177 (238)
428 smart00667 LisH Lissencephaly 94.3 0.032 7E-07 36.8 2.2 24 4-27 2-25 (34)
429 cd08044 TAF5_NTD2 TAF5_NTD2 is 94.3 0.047 1E-06 50.0 3.8 79 66-144 29-113 (133)
430 PF08513 LisH: LisH; InterPro 94.2 0.042 9.2E-07 33.7 2.2 22 6-27 1-22 (27)
431 KOG2817 Predicted E3 ubiquitin 94.2 0.17 3.7E-06 53.3 7.9 104 8-113 119-241 (394)
432 PF04494 TFIID_90kDa: WD40 ass 94.1 0.045 9.8E-07 50.8 3.3 79 66-144 40-124 (142)
433 PF10168 Nup88: Nuclear pore c 94.0 7.4 0.00016 46.9 22.2 136 350-513 41-181 (717)
434 TIGR03118 PEPCTERM_chp_1 conse 93.9 9.1 0.0002 39.6 23.5 214 437-656 24-289 (336)
435 KOG2280 Vacuolar assembly/sort 93.9 3.6 7.8E-05 47.5 17.9 184 818-1014 65-258 (829)
436 PF14761 HPS3_N: Hermansky-Pud 93.9 2.2 4.7E-05 41.8 14.1 158 884-1054 21-213 (215)
437 COG3292 Predicted periplasmic 93.8 14 0.0003 41.5 22.6 272 330-642 166-443 (671)
438 PHA03098 kelch-like protein; P 93.6 2.4 5.3E-05 50.2 17.7 195 401-607 294-516 (534)
439 PF10214 Rrn6: RNA polymerase 93.3 27 0.00058 43.2 27.6 174 795-1004 78-278 (765)
440 PF14761 HPS3_N: Hermansky-Pud 93.3 5.9 0.00013 38.9 16.1 157 799-958 20-213 (215)
441 KOG2377 Uncharacterized conser 93.2 3.3 7.2E-05 44.7 15.3 122 328-469 66-187 (657)
442 PLN00033 photosystem II stabil 93.2 17 0.00037 40.5 27.5 150 840-999 241-396 (398)
443 KOG2377 Uncharacterized conser 93.1 3.6 7.9E-05 44.4 15.3 142 840-988 25-169 (657)
444 TIGR03118 PEPCTERM_chp_1 conse 93.0 13 0.00027 38.6 21.3 243 619-880 25-291 (336)
445 PF03022 MRJP: Major royal jel 92.9 11 0.00025 39.9 19.3 169 818-990 35-253 (287)
446 KOG2280 Vacuolar assembly/sort 92.8 9.3 0.0002 44.4 18.9 185 458-655 63-255 (829)
447 COG4257 Vgb Streptogramin lyas 92.7 13 0.00027 37.8 18.1 192 840-1058 64-265 (353)
448 PHA02790 Kelch-like protein; P 92.6 5.8 0.00012 46.0 18.2 185 806-1006 270-474 (480)
449 TIGR02604 Piru_Ver_Nterm putat 92.6 3.1 6.8E-05 46.3 15.5 151 838-993 14-204 (367)
450 COG1520 FOG: WD40-like repeat 92.5 17 0.00036 40.6 21.3 201 804-1012 65-278 (370)
451 KOG1898 Splicing factor 3b, su 92.4 32 0.0007 41.9 40.6 119 936-1068 939-1061(1205)
452 PHA02790 Kelch-like protein; P 91.7 7.5 0.00016 45.0 17.7 148 492-648 318-472 (480)
453 KOG1916 Nuclear protein, conta 91.5 0.13 2.9E-06 59.4 2.9 179 817-1003 153-375 (1283)
454 COG3292 Predicted periplasmic 91.4 29 0.00064 39.2 24.0 71 390-468 164-234 (671)
455 PF14781 BBS2_N: Ciliary BBSom 91.2 8 0.00017 34.7 12.9 116 333-470 3-128 (136)
456 COG4590 ABC-type uncharacteriz 91.2 0.71 1.5E-05 49.3 7.6 158 795-962 219-389 (733)
457 KOG3630 Nuclear pore complex, 91.0 2.3 4.9E-05 51.3 12.1 147 437-589 102-260 (1405)
458 KOG1916 Nuclear protein, conta 90.8 0.27 5.9E-06 57.0 4.6 156 859-1019 110-282 (1283)
459 PF03022 MRJP: Major royal jel 90.8 22 0.00048 37.8 18.7 167 460-634 35-253 (287)
460 PF10313 DUF2415: Uncharacteri 90.7 0.63 1.4E-05 32.1 4.4 33 329-361 1-35 (43)
461 PLN00033 photosystem II stabil 90.7 32 0.00069 38.4 32.0 150 883-1052 241-396 (398)
462 PF10313 DUF2415: Uncharacteri 90.4 0.94 2E-05 31.3 5.1 32 391-422 1-35 (43)
463 PRK14131 N-acetylneuraminic ac 90.4 28 0.0006 39.0 20.2 40 596-637 314-353 (376)
464 PF10433 MMS1_N: Mono-function 90.3 43 0.00092 39.3 38.7 105 490-600 219-340 (504)
465 COG3823 Glutamine cyclotransfe 90.2 12 0.00026 36.2 13.9 100 807-911 55-159 (262)
466 TIGR03548 mutarot_permut cycli 90.2 32 0.00068 37.5 21.7 71 492-562 123-199 (323)
467 PF13449 Phytase-like: Esteras 90.1 13 0.00029 40.4 16.9 163 838-1002 20-249 (326)
468 PF08728 CRT10: CRT10; InterP 90.0 9.8 0.00021 45.0 16.1 174 808-1002 49-246 (717)
469 COG1520 FOG: WD40-like repeat 89.6 39 0.00085 37.7 23.2 197 407-613 73-279 (370)
470 PF07676 PD40: WD40-like Beta 89.5 1.2 2.7E-05 30.3 5.4 32 325-356 5-38 (39)
471 COG3823 Glutamine cyclotransfe 89.5 11 0.00025 36.4 13.1 177 401-591 55-247 (262)
472 KOG1900 Nuclear pore complex, 89.2 25 0.00054 44.0 19.0 156 849-1010 90-281 (1311)
473 COG4257 Vgb Streptogramin lyas 89.1 28 0.00061 35.4 22.4 167 785-960 136-306 (353)
474 PF11725 AvrE: Pathogenicity f 88.9 57 0.0012 42.2 22.0 150 326-512 360-517 (1774)
475 TIGR03606 non_repeat_PQQ dehyd 88.6 49 0.0011 37.5 28.5 66 324-402 25-90 (454)
476 PF12657 TFIIIC_delta: Transcr 88.4 2.2 4.8E-05 41.3 8.4 31 391-421 86-122 (173)
477 COG5167 VID27 Protein involved 88.2 17 0.00036 40.2 15.0 149 441-601 472-631 (776)
478 TIGR03606 non_repeat_PQQ dehyd 87.7 12 0.00027 42.1 14.5 114 879-993 28-166 (454)
479 KOG1983 Tomosyn and related SN 87.6 10 0.00022 47.8 15.2 69 932-1006 200-268 (993)
480 TIGR03548 mutarot_permut cycli 87.5 46 0.001 36.2 19.1 112 891-1007 72-199 (323)
481 KOG1900 Nuclear pore complex, 87.4 7.7 0.00017 48.1 13.3 172 312-512 63-273 (1311)
482 KOG2247 WD40 repeat-containing 87.3 0.1 2.2E-06 56.3 -1.8 242 733-1011 39-289 (615)
483 PLN02193 nitrile-specifier pro 87.1 65 0.0014 37.3 22.2 154 451-608 231-416 (470)
484 PF07250 Glyoxal_oxid_N: Glyox 87.1 12 0.00025 38.2 12.7 148 506-656 49-207 (243)
485 PF07569 Hira: TUP1-like enhan 87.0 4.5 9.8E-05 40.8 9.9 75 936-1011 16-104 (219)
486 KOG4659 Uncharacterized conser 86.8 96 0.0021 39.0 34.0 31 68-98 80-111 (1899)
487 PF02333 Phytase: Phytase; In 86.7 54 0.0012 36.0 23.7 188 451-648 70-292 (381)
488 PF07569 Hira: TUP1-like enhan 86.1 3.2 6.8E-05 42.0 8.1 75 888-962 18-98 (219)
489 PRK13613 lipoprotein LpqB; Pro 86.0 58 0.0013 38.5 19.4 190 798-996 364-576 (599)
490 COG5167 VID27 Protein involved 85.9 20 0.00044 39.5 14.1 142 806-959 477-632 (776)
491 PF13449 Phytase-like: Esteras 85.5 60 0.0013 35.4 23.7 167 391-589 20-231 (326)
492 smart00036 CNH Domain found in 84.9 60 0.0013 34.9 30.1 239 337-612 10-280 (302)
493 PF11725 AvrE: Pathogenicity f 84.9 70 0.0015 41.5 19.8 134 856-998 619-768 (1774)
494 PLN02153 epithiospecifier prot 84.5 69 0.0015 35.2 20.8 237 401-639 32-326 (341)
495 PF12768 Rax2: Cortical protei 84.1 22 0.00047 37.4 13.3 101 460-562 17-128 (281)
496 PF08728 CRT10: CRT10; InterP 83.9 4.3 9.4E-05 47.7 8.9 133 330-466 102-245 (717)
497 PF14781 BBS2_N: Ciliary BBSom 83.7 27 0.00059 31.5 11.6 113 530-654 5-133 (136)
498 PRK13614 lipoprotein LpqB; Pro 83.4 1E+02 0.0022 36.3 19.8 190 798-995 344-550 (573)
499 KOG2247 WD40 repeat-containing 83.0 0.63 1.4E-05 50.5 1.6 146 332-508 38-185 (615)
500 TIGR03547 muta_rot_YjhT mutatr 82.7 81 0.0018 34.7 20.1 42 503-544 168-210 (346)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-70 Score=539.18 Aligned_cols=487 Identities=20% Similarity=0.301 Sum_probs=413.0
Q ss_pred hHHHHHHHHHhhhccCchhhhhh---------ccccHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhh
Q 001396 5 NKDLVFLILQFLNEEGFTESAHI---------FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 75 (1086)
Q Consensus 5 ~~evvrli~q~L~~~G~~~s~~~---------~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 75 (1086)
+.|++|++.|+|+++||..|+.+ .+.+++.|.++|++|+|+.++..+..+ .+++.+...++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 46999999999999999999887 678899999999999999999999888 45555555569999999999
Q ss_pred hhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001396 76 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 155 (1086)
Q Consensus 76 ~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 155 (1086)
||++..|....|+.+||+.+.++. ...+++++|+.-|..++-....+... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999999986 58889999998887655333333222 112357899999999999999999
Q ss_pred ccCCCCCchHHHHHHHHhHHhhhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccc
Q 001396 156 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 235 (1086)
Q Consensus 156 ~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 235 (1086)
+|++||+.||+||++||+++|.||| ..+..|||.||.|++ .++ |+++.
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------p~qt~-------------- 217 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI------PSQTW-------------- 217 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC------Cchhh--------------
Confidence 8999999999999999999999999 556689999999988 553 44443
Q ss_pred CccccccccCCCCCCcccccccCCCCCcccccCCccccCCCCCCcccccCcCCCCCCCCCCCCccccccccccCCCccCC
Q 001396 236 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 315 (1086)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~~ 315 (1086)
T Consensus 218 -------------------------------------------------------------------------------- 217 (519)
T KOG0293|consen 218 -------------------------------------------------------------------------------- 217 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
++|..|+++||.+.||++|+| ||+++.|.+..||++.....+.- ...+.||..+|..
T Consensus 218 ------qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 218 ------QILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred ------hhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 447899999999999999996 99999999999999876554221 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+.||||.+||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||+ .|..+..+
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdl-Dgn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDL-DGNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecC-Ccchhhcc
Confidence 9999999999999999999999999998776432 24678999999999999 7999999999999995 55656666
Q ss_pred ecCC-cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 476 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 476 ~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
++-. ..|.++++ ..||+++++.+.|..|++++.++...+.. .....+|++.+.|.|++++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 5543 55888888 55889999999999999999887665543 345568999999999999988765 5569999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 633 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 633 (1086)
|++....++.+.||.....-|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++++|+| +...+|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999986666677665556678999999999999999999999999998864 599999999 5678999
Q ss_pred EECCCcEEEEECCC
Q 001396 634 IANENRIKILETPE 647 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~ 647 (1086)
+++||+|+||-...
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999997653
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-60 Score=501.75 Aligned_cols=577 Identities=18% Similarity=0.253 Sum_probs=495.3
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCcee-eeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
++||++|+ +|++... ..|.+-|+.+++.. +. .-......+++++.+||+.+|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5887764 45889999999873 21 1234567899999999999999999999
Q ss_pred EEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC
Q 001396 413 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
.+++|++.+|+.++ .++. |++||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998887 4555 999999999999997 89999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 570 (1086)
+...|++|..|+++++||+..... ...+..|...|++++|++|+..+++++. +..+.+||+.+-+..+++...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996554 6788889999999999999999999987 7789999998777777776644
Q ss_pred cCCceEEEEEecC-----CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 571 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 571 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
.+.++.+-++ +.+++++|.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777888777 6799999999999999999998887665443 233666666666667777788899999999
Q ss_pred CCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCc
Q 001396 646 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 725 (1086)
Q Consensus 646 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 725 (1086)
++.+....+-|..+.|..+.|- .|+.+.++.++..+.+|+++.. ...|.. + .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~i--i--~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQI--I--P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEE--E--e
Confidence 9999999999999999888876 5778899999999999999654 334442 2 4
Q ss_pred ccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee
Q 001396 726 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 805 (1086)
Q Consensus 726 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s 805 (1086)
+|...|.++....+|-.+++++.|..+++|.++.+.... ... -...+|.+.|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--------------------~~~--a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--------------------LCV--AQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh--------------------hhh--hhhcccccccceeeec
Confidence 599999999988888899999999999999884332100 000 1112599999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEccCceE-----E----EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001396 806 KND-AYLFSAS-GGVISLYIVMTFKT-----I----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 806 ~dg-~~l~~~~-dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 874 (1086)
..+ .++++++ |+++++|++...+. . .+...|...|+|++++| +.+++|||+.|++.+||+++.+....
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 765 5677777 89999999976221 1 12346899999999999 89999999999999999999999999
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeE
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 953 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i 953 (1086)
++.||+..|+++.|+|..+.++|+|.|++|+||.+++ ..|+++++||.. .|..+.|-.+|+.|++ +.||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 9999999999999999999999999999999999998 558999999987 8999999999999999 799999
Q ss_pred EEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 954 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
++|++++++|... +..|..+|+++.-++++.+++||+.||.|.+|.=.+.
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999998 7789999999999999999999999999999975543
No 3
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-58 Score=439.55 Aligned_cols=483 Identities=19% Similarity=0.272 Sum_probs=395.1
Q ss_pred hHHHHHHHHHhhhccCchhhhhh----------ccccHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhh
Q 001396 5 NKDLVFLILQFLNEEGFTESAHI----------FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 74 (1086)
Q Consensus 5 ~~evvrli~q~L~~~G~~~s~~~----------~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 74 (1086)
..+|||||.|||+|+.++++.++ ..+.++.|-+.|.+|+||.+++.++++ ++|++ -+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 45899999999999999999888 567899999999999999999999999 89887 457899999
Q ss_pred hhhhcCCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHHhcccccccccccccccCCC-hHHHH-HHHHHHHhhcccCc
Q 001396 75 FFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDA-LSARK-NMMLELKQIIEANP 150 (1086)
Q Consensus 75 ~~Ell~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~-~~~r~-~l~~~l~~~~~~~~ 150 (1086)
.+||+|.++...|..+||.- +.-|.+.++++|.+|..||..+.++..+. |++. ++.|+ .+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea----Y~dssKEkrRa~IAQ~ls~EV~V-- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA----YGDSSKEKRRAVIAQALSGEVHV-- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh----cCcchHHHHHHHHHHHhcCceEE--
Confidence 99999999999999999973 55566779999999999999988887766 5443 34444 444466555544
Q ss_pred cccccccCCCCCchHHHHHHHHhHHhhhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 001396 151 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS 230 (1086)
Q Consensus 151 ~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 230 (1086)
+||+||+.||.|||+||+.+-+.+. . .+| .-|+....
T Consensus 155 ----------VppSRLlaLlGQaLKWQqHQGLLPP---G------------------t~i-----DLFRGkAA------- 191 (508)
T KOG0275|consen 155 ----------VPPSRLLALLGQALKWQQHQGLLPP---G------------------TTI-----DLFRGKAA------- 191 (508)
T ss_pred ----------cChHHHHHHHHHHhhhHhhcCCCCC---C------------------cee-----eeccchhh-------
Confidence 8999999999999999998654331 0 000 11111110
Q ss_pred CCcccCccccccccCCCCCCcccccccCCCCCcccccCCccccCCCCCCcccccCcCCCCCCCCCCCCccccccccccCC
Q 001396 231 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 310 (1086)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~ 310 (1086)
.-...|..||.+..
T Consensus 192 --------------------------------------------~K~~~Ee~~Pt~l~---------------------- 205 (508)
T KOG0275|consen 192 --------------------------------------------MKDQEEERYPTQLA---------------------- 205 (508)
T ss_pred --------------------------------------------hhhhHhhhchHHhh----------------------
Confidence 00112234555542
Q ss_pred CccCCCccceeeeec-cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCC
Q 001396 311 TSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 389 (1086)
Q Consensus 311 ~~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 389 (1086)
+.++ |.++.+.|..|||||+| |++|+.||.|.+||..+|+..+...++.- .-+--+
T Consensus 206 -----------r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAq-----------d~fMMm 262 (508)
T KOG0275|consen 206 -----------RSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-----------DNFMMM 262 (508)
T ss_pred -----------hheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhh-----------cceeec
Confidence 2222 55668999999999996 99999999999999999998875443311 114457
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
..+|.|+.||.|...||+|+.||.|+||.+.+|.|++... .+|+..|+|+.||.|+. .+++++.|.++++.-+++|
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence 8999999999999999999999999999999999998532 38999999999999999 6999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC--ceEEEEEec-CCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~-d~~~l~~~~~~~~ 546 (1086)
++++.|+||...|+...| .+||..+++++.||+|++|+..+.++..++...+. +|.++..-| +...++.|..
T Consensus 339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--- 413 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--- 413 (508)
T ss_pred hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence 999999999999999999 56889999999999999999999999887766543 677777766 4567777765
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
.+.+++.+++ |+.++.+.......+...+++.+|.|.++++.++|+.++.|.+.+|++..++..|.. .+..++-+|
T Consensus 414 -sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP 489 (508)
T KOG0275|consen 414 -SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP 489 (508)
T ss_pred -CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence 5579998874 778888876554556778888999999999999999999999999999999988754 478899999
Q ss_pred CCCEEEEEECCCcEEEEE
Q 001396 627 NGTLLAVIANENRIKILE 644 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~ 644 (1086)
..+++|+-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
No 4
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-53 Score=430.08 Aligned_cols=576 Identities=15% Similarity=0.188 Sum_probs=462.2
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
.-+.-.|.|+.++.+.+ ..|.+-++++...... +.+|..+++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34455688887777654 6788888877665433 78999999999999999999999999
Q ss_pred CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE-eCCCcEEEEeCCCCceeEEeecCCcceEEEeeccc
Q 001396 412 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 490 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 490 (1086)
|+|+|||....+.+. ..+++.-.++|.+++|+.|++++ +++| +.++-.+++-.++|..+-.+.||...|+++.|-|+
T Consensus 81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~RI-~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKRI-AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred CcEEEEeccCcceee-eeeeeecccccccceeCCCCcEE-EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 999999987744322 23567788999999999999962 3333 33444455555689999999999999999999776
Q ss_pred CCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001396 491 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570 (1086)
Q Consensus 491 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 570 (1086)
. .-++++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++.+. |+.+++||-.+|+.+..+.....
T Consensus 159 R-PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 R-PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred C-ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 4 358999999999999987777777788889999999999999999999987 77899999999999999996666
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC-CCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 571 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++....... ....+.|- ...|++.+.+|.|.+++.....
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 67999999999999999999999999999999999999997664421 12234444 5689999999999999999999
Q ss_pred eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCccccc
Q 001396 650 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 729 (1086)
Q Consensus 650 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 729 (1086)
.+..+.+|...|++++.+ +|++++++++.||.|.-|+...+... .+...+|..
T Consensus 312 ~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~-----~~~g~~h~n 364 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSD-----RLAGKGHTN 364 (603)
T ss_pred hhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccc-----ccccccccc
Confidence 999999999999999996 78899999999999999998754433 223345899
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.|.+++.+..+. +++.+.|.++++.++..+...... . .+ ......+++..+|+.
T Consensus 365 qI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 365 QIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDGG 418 (603)
T ss_pred eEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCCC
Confidence 999999887666 788888888888776543221000 0 01 122334889999988
Q ss_pred EEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEeccccCCeEEEE
Q 001396 810 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLV 887 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~v~~l~ 887 (1086)
.++.+.++.|.+..-.++ +.... ..-...++|++| ++..+|+|+.||.|+||.+..+++. ..+..|.++|++++
T Consensus 419 ~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred EEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 888887766666542222 22222 345678999999 9999999999999999999876543 45667999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceec
Q 001396 888 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 966 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~ 966 (1086)
+|||+.+||++...+.+.+||+.+.+.... ...-|. ..|.+++|||+++++|+ +-|..|.||+++.......
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~----~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTN----RWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecc----eeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 999999999999999999999998764221 111122 37999999999999999 6899999999998777666
Q ss_pred cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 967 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 967 ~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
....|...|+.+.|-.+ ..|++.|.|..|++|++.
T Consensus 568 iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred eccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 67889888999999855 578889999999999874
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-55 Score=465.78 Aligned_cols=550 Identities=14% Similarity=0.206 Sum_probs=461.5
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecC-CCccEEEEEECCCCCE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~ 404 (1086)
+-.+.+++++.+||+++ |++++...-+++|++.+|+.++. ++. |+.+|.-++|+|.|.+
T Consensus 60 ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~L 119 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTL 119 (775)
T ss_pred cchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCce
Confidence 55679999999999984 89999999999999999988764 334 9999999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEeecCCcceE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY 483 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 483 (1086)
||+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|+-.+..|++|+.|+++++||+.++.. +..+..|.+.|+
T Consensus 120 lAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 120 LATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVT 196 (775)
T ss_pred EEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhhee
Confidence 9999999999999999987666 789999999999999998876899999999999999996654 889999999999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC-----CCEEEEEeeCCCCceeEEEEeCCC
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
++++.+ |+..+++++.|..+.+||+...+...+.... ..+.++.+-++ |.++++.+. ++.+++||..+
T Consensus 197 sL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es 269 (775)
T KOG0319|consen 197 SLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSES 269 (775)
T ss_pred eeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecC----CceEEEEeccc
Confidence 999954 6789999999999999999655554444332 24566667666 668888875 77899999999
Q ss_pred CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE-ecCCCEEEEEECC
Q 001396 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANE 637 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~d 637 (1086)
++++....... ...+..+...+....++..+.|..+.++|.++.+....+-+. ...|..|.| .|+.++|+++++.
T Consensus 270 ~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 270 GKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY--NDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred chhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC--chhheeeeecCCccceEEEEeCC
Confidence 98877665543 234666777777778888899999999999999988887654 346888886 4678999999999
Q ss_pred CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccc
Q 001396 638 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 717 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 717 (1086)
+.+++|+..+..+. .+.+|.+.|.++... ..|-++++++.|.++++|.++.... .
T Consensus 346 ~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~----------------------~~g~llat~sKD~svilWr~~~~~~--~ 400 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQ-IIPGHTEAVLSLDVW----------------------SSGDLLATGSKDKSVILWRLNNNCS--K 400 (775)
T ss_pred CceEEEecCCCceE-EEeCchhheeeeeec----------------------ccCcEEEEecCCceEEEEEecCCcc--h
Confidence 99999998887666 889999999988743 4577899999999999999832111 1
Q ss_pred cccccCCcccccceEEEEEecCCc-eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCC
Q 001396 718 QSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 796 (1086)
Q Consensus 718 ~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 796 (1086)
........+|.+.|.+++++..+. .+++++.|+++++|+++..+.... +. ..........|.
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~~---------~~~~~~t~~aHd 463 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------PI---------VLTCRYTERAHD 463 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------cc---------eehhhHHHHhhc
Confidence 111222357999999999987654 567788999999999987221000 11 111122233599
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 875 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 875 (1086)
..|.|++++|+.+++|+|+ |.+.+||+++.++...++.+|...|.|+.|+| ..+.+|++|.|++|+||.+.+..++.+
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeee
Confidence 9999999999999999999 89999999999999999999999999999999 889999999999999999999999999
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEE
Q 001396 876 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 954 (1086)
Q Consensus 876 l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~ 954 (1086)
|.||+..|..+.|-.+|+.|+|++.||.|++|++++++ |+..++.|.. .|.+++.++.+.++++ +.|+.|.
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEE
Confidence 99999999999999999999999999999999999955 7788888886 9999999999999988 6999999
Q ss_pred EEEcCC
Q 001396 955 IYEAEE 960 (1086)
Q Consensus 955 vwd~~~ 960 (1086)
+|.=.+
T Consensus 615 ~wkD~T 620 (775)
T KOG0319|consen 615 FWKDVT 620 (775)
T ss_pred EeecCc
Confidence 996443
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-51 Score=434.70 Aligned_cols=593 Identities=18% Similarity=0.298 Sum_probs=453.9
Q ss_pred ccCCCccceeeeec-cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 312 SFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 312 ~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.+.++.++...+|. .+...|++++.||+|. +|++....|...+-++.....++.++++
T Consensus 38 sv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~fk-------------------- 96 (893)
T KOG0291|consen 38 SVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNFK-------------------- 96 (893)
T ss_pred EEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEeec--------------------
Confidence 44555555666666 6777999999999997 5777778899999998888777765543
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc-----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|-..|.++.|+.|.+ ++++|+.|.++++|+
T Consensus 97 ~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFG 173 (893)
T ss_pred CccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEE
Confidence 789999999999999998654 699999764322 223345678999999999999999 899999999999999
Q ss_pred CCCCce--eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 466 AVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
++..+- .+.+.+|.+.|.++-|. .|...+++.+.||.+.+|.......... .... ..+|.--.-.-.
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~k--------d~eg~~d~~~~~ 242 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELD-KAEK--------DEEGSDDEEMDE 242 (893)
T ss_pred eccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccc-cccc--------cccccccccccc
Confidence 887665 67789999999988884 4566899999999999997764311110 0000 011100000000
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
++++...-..|-.. .+.+-. .....+.+.+|++..+.|++|=..|.+.+|.+....+++.+..... .|..++
T Consensus 243 ~~Eek~~~~~~~k~----~k~~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~ 314 (893)
T KOG0291|consen 243 DGEEKTHKIFWYKT----KKHYLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVS 314 (893)
T ss_pred cchhhhcceEEEEE----Eeeeec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEE
Confidence 00100011122110 011111 1126799999999999999999999999999999999999986643 589999
Q ss_pred EecCCCEEEEEECC-CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 624 FNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 624 ~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
|+..|..+|.|+.. |.+.||+..+...+-.
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------------------- 345 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------------------- 345 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeeccceeee-------------------------------------------------
Confidence 99999999999875 7899998876533322
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
..+|...+.+++++|||+++++|+.||.|+||+ ..+|
T Consensus 346 ---------------------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----------------------~~Sg 382 (893)
T KOG0291|consen 346 ---------------------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----------------------TQSG 382 (893)
T ss_pred ---------------------ccccccceeeEEECCCCcEEEeccCCCcEEEEe----------------------ccCc
Confidence 234777889999999999999999999888765 5667
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCC
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
.|+.+++- |...|+.+.|+..|+.+++.+ ||+|+.||+...+..+++..+. ....|++..| .|.++..|+.|.
T Consensus 383 fC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~ 457 (893)
T KOG0291|consen 383 FCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDS 457 (893)
T ss_pred eEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccce
Confidence 78888764 999999999999999999999 9999999999999999998654 3568999999 899999999886
Q ss_pred -eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEe
Q 001396 861 -TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 861 -~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
.|++|++++|+++..+.||.++|.+++|+|++..|||+|.|++|++||+-.... +...++.. ..+..++|+
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i~-------sdvl~vsfr 529 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEIR-------SDVLAVSFR 529 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEeec-------cceeEEEEc
Confidence 899999999999999999999999999999999999999999999999976321 11223222 148899999
Q ss_pred cCCCEEEE-EeCCeEEEEEcCCccceeccc------cC-------------CccCEEEEEEeCCCCEEEEEECCCcEEEE
Q 001396 940 KDQTRFLL-VHETHLAIYEAEELTCLKQWF------PI-------------SSVPISQATFSCDCRMVFTSFVDGTLSIH 999 (1086)
Q Consensus 940 ~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~------~~-------------h~~~v~~l~fs~dg~~l~s~~~Dg~v~vW 999 (1086)
|||+.||+ +-||.|.+||...+..+..+- .+ .....+.+++|+||.+|++||....|++|
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999 689999999998765553211 11 15788999999999999999999999999
Q ss_pred EcCCCceeeeecccc--------------------------------------ccCCCC----ccC----cccceEEEEC
Q 001396 1000 EASNLEVQCRILSTA--------------------------------------YLRPTT----SCL----HVYPHAIAAH 1033 (1086)
Q Consensus 1000 d~~~~~~~~~~~~~~--------------------------------------~~~~~~----~~~----~~~~~~~~~~ 1033 (1086)
+++++.++.+|+... .+|... +.. .+.+.++.|+
T Consensus 610 ~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fs 689 (893)
T KOG0291|consen 610 DVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFS 689 (893)
T ss_pred ECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEEC
Confidence 999999988887111 111110 011 2556889999
Q ss_pred CCCCCEEEEEeCCCcEEEEcc
Q 001396 1034 PLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1034 p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
| .|+-+|++++.|. .|+.+
T Consensus 690 P-tgraFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 690 P-TGRAFAAATTEGL-LIYSL 708 (893)
T ss_pred C-CcCeeeeecccce-EEEec
Confidence 9 7899999999885 34443
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-50 Score=410.87 Aligned_cols=541 Identities=12% Similarity=0.199 Sum_probs=434.6
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
...+.+|...++-..|||.|- ++|+|...|+|+|||....+.+...+++ .-.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 456689999999999999997 5999999999999999876655544443 2457999999999
Q ss_pred CCCEEEEEeCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 401 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 401 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
|+++|++.++. +..+++-.++|..+. ++.||...|.+++|-|.... .++||++|++|.+|+-.--+...++..|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 99999887543 333444444454444 68899999999999998765 8999999999999996666777888899
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec---CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
...|+++.|+| ||.++++++.||+|.+||=.+++.+..+. .|.+.|.+++|+||++.+++++. +..+++||
T Consensus 190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd 263 (603)
T KOG0318|consen 190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD 263 (603)
T ss_pred ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence 99999999955 78999999999999999999999988887 78899999999999999999987 66799999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+.+.++++++.....-......+.|. +..|++.+.+|+|.+++...+..+..+.+|. ..|++++.+|++++|++|+
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence 99999999987654222344455565 5689999999999999999999888888774 4699999999999999999
Q ss_pred CCCcEEEEECCCCCeeeec-cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCC
Q 001396 636 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 714 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~ 714 (1086)
.||.|.-|+..++..-+.. ++|...|.+++.. +...+++.+.|.++++.++....-
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence 9999999999988666544 6788888887775 235577888999999987643322
Q ss_pred ccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCC
Q 001396 715 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 794 (1086)
Q Consensus 715 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 794 (1086)
.....+.+. ....+++..+++..++.+...+.+.+-+... ....+
T Consensus 397 t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~~----- 441 (603)
T KOG0318|consen 397 TKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSIP----- 441 (603)
T ss_pred cccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceeec-----
Confidence 222211111 2234788888887666666555444422211 11111
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceE--EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
......++|++|++..+|+|+ |+.++||.+..+.. ...+..|.++|++++||| |+.+||+|...+.|.+||+.+.+
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence 345678999999999999998 79999999987553 334567999999999999 99999999999999999999987
Q ss_pred eEEE-eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeC
Q 001396 872 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 872 ~~~~-l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
.... +.-|+.+|.+++|||+.+++|||+-|-.|.||+++... ..+.....|.. .|..++|-.+...+-++.|
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCc
Confidence 7433 33499999999999999999999999999999999744 23555566665 5999999998888888999
Q ss_pred CeEEEEEcC
Q 001396 951 THLAIYEAE 959 (1086)
Q Consensus 951 ~~i~vwd~~ 959 (1086)
..|++|++.
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999864
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-48 Score=413.33 Aligned_cols=583 Identities=15% Similarity=0.178 Sum_probs=444.6
Q ss_pred CceEeeec-CCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 330 SPMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~s-pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
.+..+..+ ..|++ +| ++.-..|.+||+++|+...... .......|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~-va-~~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA-VA-VSALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE-EE-EeccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 34444433 45875 33 3334789999999996554211 22334689999999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
..||.|+||+..++.... ++.+|...|+.+.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875433 7889999999999999999 89999999999999999888899999999999988875
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC---------
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 559 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--------- 559 (1086)
. +..++++.+.|+.|++||+++..+..+...|.+.+..+++.+ +.+++++. +..+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 3 456999999999999999999999999999999999999988 67777765 556999998211
Q ss_pred ---eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEE--------EcCCC--------------
Q 001396 560 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT--------IDAGG-------------- 614 (1086)
Q Consensus 560 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------~~~~~-------------- 614 (1086)
+...++... ..+....+...++++++++-+.|..+.++.+.+.+.+.. ...+.
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 011112211 134455666778888999999999999998875321110 00000
Q ss_pred ----------CCCCCceEEEecCCCE--EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCee
Q 001396 615 ----------GLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 615 ----------~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
....+.++.+-|.++. -++.-.++++.+|.++......
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~------------------------------ 358 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS------------------------------ 358 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC------------------------------
Confidence 0112344555443221 1122344555555544210000
Q ss_pred eecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCcc
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 762 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 762 (1086)
| .+.... .+...+|...|+++++|.+...+++++. +.+++|
T Consensus 359 -------p----------------------~~~~~~--~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW------- 399 (888)
T KOG0306|consen 359 -------P----------------------EADRTS--NIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW------- 399 (888)
T ss_pred -------c----------------------cccccc--eeeeccchhheeEEEeecCceeeeecCC-CcEEEE-------
Confidence 0 000011 1122359999999999999876655554 455555
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeE
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 841 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~ 841 (1086)
+..+.+|+.++. ...+.+..|-|.++++++|. .|.+.+||+.+...+.+.+.|.+.|.
T Consensus 400 ---------------n~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 400 ---------------NRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW 458 (888)
T ss_pred ---------------EccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccccee
Confidence 556667777653 34788999999999999998 59999999999999999999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCC-----ceeE--------EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 842 SLAFNPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 842 ~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~~~~--------~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
+++.+| |++.+++|+.|.+|++||..- |... .+++ -...|.|+.+||||++||.+=-|.+|+||-
T Consensus 459 si~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 459 SISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred eeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 999999 999999999999999999742 1111 1222 346799999999999999999999999999
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 987 (1086)
+++ .+..-.+.||.- +|.++.+|||++++++ +.|.+|++|-+.=|.|-..++ +|...|.++.|.|+..++
T Consensus 537 lDt-----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~F 607 (888)
T KOG0306|consen 537 LDT-----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLF 607 (888)
T ss_pred ecc-----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeE
Confidence 998 445566778876 8999999999999999 689999999999999999854 799999999999999999
Q ss_pred EEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 988 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 988 ~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
+++|.|+.|+-||-+..+.+..+. .|...++ |++.+| +|.++++++.|.+|++|+-.++.
T Consensus 608 Ft~gKD~kvKqWDg~kFe~iq~L~--------~H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEKFEEIQKLD--------GHHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred EEecCcceEEeechhhhhhheeec--------cchheee--eeEEcC-CCCeEEeccCCceeEeeeccCcc
Confidence 999999999999999998887777 2233344 788888 79999999999999999987633
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-51 Score=400.04 Aligned_cols=333 Identities=20% Similarity=0.326 Sum_probs=305.3
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..|...+.||.+.|.|++|||+|++ ||+|+.|.++++||+.+..+.++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 5677889999999999999999996 99999999999999999888876 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC-----CCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-----d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..++++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987665 5889999999999965 556 7999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEe-----------cCCC-----
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 536 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~~----- 536 (1086)
..+.+|+.+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999999999832 3 499999999999999999999999999999999998877 2233
Q ss_pred --------------------EEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCc
Q 001396 537 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 595 (1086)
Q Consensus 537 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 595 (1086)
.|++++. +..+.+|+... .+++..+.+|+ ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 77899999764 45888899998 99999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceec
Q 001396 596 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 675 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 675 (1086)
|++||.++|+.+..+.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999866 5579999999999999999999999999999999999999999999999995
Q ss_pred cccCCeeeecCCCCCCcccceeccccCccceee
Q 001396 676 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 676 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~ 708 (1086)
|||+.+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 8899999999999999995
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-48 Score=413.50 Aligned_cols=547 Identities=13% Similarity=0.200 Sum_probs=433.9
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
+.+|+|+.-+||.- +||+|..||.|+||+..++..+.+ +.||...|+++.|...|.+||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 35899999999985 799999999999999998866654 8899999999999999999999
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEee
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 487 (1086)
|+.|+.|.+||+-....+. .+.||.+.|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.++++++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998755433 6889999999999998777 8999999999999999999999999999999999999
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCcee-------------EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGAR-------------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
.+ ..+++++.|+.+++|++...... .......++...++..++++++++-+. +..+.++
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~----d~~~e~f 271 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGA----DKVIELF 271 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecc----hhhhhhe
Confidence 54 58999999999999998321100 011122234556667778888877765 5567777
Q ss_pred eCCCCeeeeE--------------------------------EecccccCCceEEEEEecCCCEE--EEEECCCcEEEEE
Q 001396 555 NESEGAIKRT--------------------------------YQGLQLQHNSVSVVHFDTAKDQI--LAAGDDHVIKIWD 600 (1086)
Q Consensus 555 d~~~~~~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~l--~~~s~dg~i~iwd 600 (1086)
.+.+.+.+.. +... .....+.++.|.|.+... +..-.++++..|.
T Consensus 272 rI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i-r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ys 350 (888)
T KOG0306|consen 272 RIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI-RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYS 350 (888)
T ss_pred eecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe-echhheeEEEEEecCCcceeEEEeecCceEEEE
Confidence 6654321100 0000 012467778887765422 2235677888887
Q ss_pred cCC-Ce------eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 601 MNK-VQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 601 ~~~-~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
+.. +. .+..+...++...|..+++|.+...+++|+ .+.+.+|+..+.++++++... .+.+..|
T Consensus 351 l~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~F------- 420 (888)
T KOG0306|consen 351 LENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKF------- 420 (888)
T ss_pred eccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEe-------
Confidence 765 22 233445556677899999999887777765 478999999999999887643 4444444
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
-|.+++++.|...|.+.++|+......... ..|.+.|.+++.+||++.+++++.|.+|+
T Consensus 421 ---------------vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti------~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 421 ---------------VPGDRYIVLGTKNGELQVFDLASASLVETI------RAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred ---------------cCCCceEEEeccCCceEEEEeehhhhhhhh------hccccceeeeeecCCCCceEEecCCcEEE
Confidence 377889999999999999997643322221 24899999999999999999999999999
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 832 (1086)
+|++..-.. ..|... ++..+.. ..+. .-...|.|+.+||||++||++- |++++||-+.+.+....
T Consensus 480 fWdf~l~~~-~~gt~~-----k~lsl~~---~rtL-----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls 545 (888)
T KOG0306|consen 480 FWDFKLVVS-VPGTQK-----KVLSLKH---TRTL-----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS 545 (888)
T ss_pred EEeEEEEec-cCcccc-----eeeeecc---ceEE-----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee
Confidence 999754321 111110 0011110 1111 2467899999999999999997 99999999999999999
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 912 (1086)
+.+|.-+|.|+.+|| |+++++||+.|.+|++|-++-|.|...+-+|.+.|.++.|-|+...+.++|.|+.|+-||-..
T Consensus 546 LYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k- 623 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK- 623 (888)
T ss_pred ecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCcc
Q 001396 913 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 962 (1086)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~ 962 (1086)
...++.+.+|.. .|.+++.+|+|.++++ +.|..|++|......
T Consensus 624 ----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 624 ----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ----hhhheeeccchh---eeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 457888888886 8999999999999999 689999999977533
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-50 Score=393.82 Aligned_cols=367 Identities=20% Similarity=0.290 Sum_probs=294.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 78999999999999999999999999999999999976554 7899999999999999999 899999999999999
Q ss_pred CCCCcee-EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 466 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 466 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.++|+++ ..+.+|...|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 788999999999999652 23366677777765
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|+.++|||+..+.++..+.+|. .+|+|+.|..+| +|++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 6668889988899999999998 999999998775 899999999999999999999999998866 5888888
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
+.|- .|-+|..|.+=+-....+..... +......
T Consensus 297 sTdy-~LRtgaf~~t~~~~~~~se~~~~------------Al~rY~~--------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGRKPKSFSEEQKK------------ALERYEA--------------------------------- 330 (480)
T ss_pred cchh-hhhccccccccccCCChHHHHHH------------HHHHHHH---------------------------------
Confidence 7542 22233222211110000000000 0000000
Q ss_pred ceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCc
Q 001396 705 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 784 (1086)
Q Consensus 705 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 784 (1086)
+.-..+.++++++.|+++.+|+-.... ++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence 000122345555555555555421110 00
Q ss_pred eeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001396 785 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 863 (1086)
Q Consensus 785 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 863 (1086)
+.. .. +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++
T Consensus 360 i~r--mt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 ITR--MT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hhh--hh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 100 11 4899999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 864 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 864 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
+|++.+.++...+.||.+.|.++.|+|||+.+++++.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-45 Score=387.67 Aligned_cols=540 Identities=14% Similarity=0.172 Sum_probs=432.0
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|.+++.||+|. ++++....|.+.+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 58899999999987655 499999988754331 225778899999999999 888899999999999888888888
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--------eEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+. ...+|.+++|+| ||.+++. +..+.+.+|....... ...+.++...+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav-~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAV-GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEE-EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 678899999955 6655554 5567899997654322 3356777889999999999999999986
Q ss_pred CceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--------------------
Q 001396 547 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 604 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 604 (1086)
|..+++|+++..+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|.....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 77899999886655 55666777 99999999999999999999999999987611
Q ss_pred ---ee---------EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 605 ---QL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 605 ---~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
+. ....-.......+.+.+|++..+.|+++-..|...+|++..-..+..+..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi---------------- 305 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI---------------- 305 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec----------------
Confidence 10 00111111124577888888888888888888888888876655544331
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ce
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV 751 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~ 751 (1086)
...+|..++|+..|..++.++.. |.
T Consensus 306 ------------------------------------------------------s~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 306 ------------------------------------------------------SDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred ------------------------------------------------------ccceeeEEEecccCCEEEEcCCccce
Confidence 23467888888889999888776 99
Q ss_pred eEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEE
Q 001396 752 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 830 (1086)
Q Consensus 752 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~ 830 (1086)
+.||+|+.+.+ . +...+|...+.++++||||+++|+|. ||+|+|||..++-|.
T Consensus 332 LlVweWqsEsY------------------------V--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 332 LLVWEWQSESY------------------------V--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred EEEEEeeccce------------------------e--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 99999887643 1 22336999999999999999999998 799999999999999
Q ss_pred EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCeEEEEEeCCCCEEEEEeCCC-cEEEEE
Q 001396 831 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGDA-QIFVWD 908 (1086)
Q Consensus 831 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s~s~dg-~i~iwd 908 (1086)
.+|..|...|+.+.|+. .++.+++.+-||+|+.||+......+++.... -...|++..|.|..+..|+.|. .|.||+
T Consensus 386 vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 99999999999999999 99999999999999999999999998887532 3456788888899998888876 599999
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 987 (1086)
+++|. .+..+.||.. +|.+++|+|+|..|++ +-|.+|++||+-......+.+ .+...+..+.|+|||+-|
T Consensus 465 ~qTGq-----llDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 465 VQTGQ-----LLDILSGHEG---PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred eecCe-----eeehhcCCCC---cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeE
Confidence 99965 6778888886 9999999999999999 689999999987553333322 357889999999999999
Q ss_pred EEEECCCcEEEEEcCCCceeeeeccccccCCCC----------ccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 988 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT----------SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 988 ~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
++++.||.|.+||...+.....+.....+..+. +...-.-..+++++ ||..+++||..+.|+++++++.
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchh
Confidence 999999999999999988876665433332221 11112236789999 7999999999999999999764
Q ss_pred C
Q 001396 1058 G 1058 (1086)
Q Consensus 1058 ~ 1058 (1086)
-
T Consensus 615 v 615 (893)
T KOG0291|consen 615 V 615 (893)
T ss_pred h
Confidence 3
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=364.36 Aligned_cols=621 Identities=14% Similarity=0.155 Sum_probs=417.0
Q ss_pred ceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE--
Q 001396 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-- 408 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-- 408 (1086)
-..++.+|-.. ++|.- ....|.+||+....+-+ ++..|..+++|+|||++|+|+|+|
T Consensus 40 ~~gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAYP-AGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceeec-cCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566666554 33321 22678899987765443 366788899999999999999998
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEe
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~ 486 (1086)
+....++||++..-..+. ++..|+..|+|++|+|.++ ++++.+... .|.+||++.......-+ -...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 366789999999876554 6889999999999999999 788776544 57788876544333222 456688888
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeE-E--ecCCCC--------ceEEEEE----ecCCCEEEEEeeCCCCceeE
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-D--YDAPGL--------GCTRMAY----SANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~--~~~~~~--------~i~~~~~----s~d~~~l~~~~~~~~~~~~i 551 (1086)
| ++||.++++.+ ...|++|.++...... . +.+... ....++. ..+..+.++. .|.+
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL 243 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL 243 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence 8 66888888876 5789999887665221 1 111100 0001110 0111111111 1112
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-------------------
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA------------------- 612 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~------------------- 612 (1086)
.-+ ...+++.++..-. ....+|++.+ .++|++|+.+|.|++|+..+-....+++.
T Consensus 244 vEF--SsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 244 VEF--SSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred eee--chhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 222 2222222221111 1344566665 57999999999999999877544433321
Q ss_pred ---CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee---eeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 613 ---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 613 ---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
....+...++.|++....|.+...|..+++||++.-..+ ..+--|...|+.+..-|..-.. .....
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~-----~~~ac--- 389 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHS-----PTAAC--- 389 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccC-----ccccc---
Confidence 111233456889999999999999999999999876443 3344577778777665521100 00001
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
-|.+ -++++++|++||+|+++.....+... .-.++.+-..++.. |++..+..
T Consensus 390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyr-------------RNils~~l~ki~y~--d~~~q~~~---------- 441 (1080)
T KOG1408|consen 390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYR-------------RNILSANLSKIPYE--DSTQQIMH---------- 441 (1080)
T ss_pred --CCcc-ceeEecCCCcEEEeecccccccceee-------------cccchhhhhcCccc--cCchhhhh----------
Confidence 1222 37899999999999987532222110 00111111111111 11100000
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEE
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 845 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 845 (1086)
....-++|-.... . ......++++++||||++||+|+ .|.++||++...+....+..|..+|.|+.|
T Consensus 442 ----d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 442 ----DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY 509 (1080)
T ss_pred ----hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence 0000111100000 0 12566799999999999999998 599999999999999999999999999999
Q ss_pred cCC--CCCEEEEEeCCCeEEEEEcCC-ceeEEEeccccCCeEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeeeee
Q 001396 846 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSL 920 (1086)
Q Consensus 846 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~v~~l~~spdg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 920 (1086)
|.. ..++||+++.|..|.|||+.. ..++.++.+|...|+++.|.-.| ..++++|.|+.|.+ +...... . -.+
T Consensus 510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~-~-g~~ 586 (1080)
T KOG1408|consen 510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKAS-S-GRL 586 (1080)
T ss_pred cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhcccc-C-cee
Confidence 853 367999999999999999975 36788999999999999999887 78999999997754 4332110 0 011
Q ss_pred eccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccC--CccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 921 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 921 ~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
..-..+......+..++..|..+++++ +.|..|+||++.+|+..+.+... |.+....+...|.|-|||+.+.|.++.
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 111111111246889999999999999 79999999999999998876544 467788889999999999999999999
Q ss_pred EEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 998 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 998 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++|..+|++++++.. +.-.+..+.|.+ |...|++.+.||.|.||.++
T Consensus 667 ~~Df~sgEcvA~m~G----------HsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTG----------HSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EEEeccchhhhhhcC----------cchheeeeeecc-cchhheeecCCceEEEEECc
Confidence 999999999998882 223345788999 68999999999999999986
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-40 Score=349.48 Aligned_cols=509 Identities=15% Similarity=0.186 Sum_probs=379.8
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEe--ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+.+..|..+++|++||++|+| +|+|- ....++||++..-..+.+ +..|...|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 345677889999999999996 89886 345699999998776665 66899999999999
Q ss_pred CCCCEEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE----
Q 001396 400 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 473 (1086)
Q Consensus 400 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~---- 473 (1086)
|.++|+++.+. |-.|.+||++...... -..-...|.+++|+.||. ++++.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 99999998765 5578889887543221 123456799999999999 788887 6789999987665110
Q ss_pred ---------Ee------------------------ecC-----------------CcceEEEeecccCCccEEEEEEcCC
Q 001396 474 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 503 (1086)
Q Consensus 474 ---------~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~s~dg 503 (1086)
.+ .|| +..-.|+++ +..+++.|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 001 011123333 335899999999
Q ss_pred eEEEEEcCCCceeEEecCC------------------------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 504 KIKAWLYDSLGARVDYDAP------------------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 504 ~i~vwd~~~~~~~~~~~~~------------------------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.|++|+..+.....++... -.....+.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 9999987654432222110 012456788888888888775 778999999876
Q ss_pred eeeeEEecccccCCceEEEEEecC-----------CCEEEEEECCCcEEEEEcCCCe---eEE----------EEc----
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQ---LLT----------TID---- 611 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~---~~~----------~~~---- 611 (1086)
+.+......-.|...|+.+.--|. ...+++++.|++|++|++..+. ... ...
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 554433322223366666654441 2358899999999999997521 110 000
Q ss_pred ------------------CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 612 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 612 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
.-++...+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++...
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--- 513 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--- 513 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence 00122467899999999999999999999999999999999999999999999997321
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCC--ceEEEeeccce
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV 751 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~ 751 (1086)
-..++|++++.|.-|.++|... ...+.....+|...|+++.|...| ..+++++.|..
T Consensus 514 ----------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 514 ----------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred ----------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 2357899999999999999652 222333335699999999999888 77888888876
Q ss_pred eEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEE
Q 001396 752 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 830 (1086)
Q Consensus 752 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~ 830 (1086)
+.+--.+.. .+|..+.....+ -....+..|++.|..++++++. |..|+||++++++..
T Consensus 573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 654211110 111111111110 1355688999999999999998 899999999999999
Q ss_pred EEEcC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001396 831 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 907 (1086)
Q Consensus 831 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 907 (1086)
+.|++ |.+....+...| .|-|||+.+.|+++.++|+.+|+++.+..||...|+.+.|++|-+.|++++.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 99976 556788899999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC
Q 001396 908 DVDG 911 (1086)
Q Consensus 908 d~~~ 911 (1086)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 9764
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.5e-39 Score=341.75 Aligned_cols=607 Identities=13% Similarity=0.147 Sum_probs=427.7
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC---EEEEEe
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAY 409 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~ 409 (1086)
...|.|.+ ++|.|.. ..|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence 34456766 4677654 789999987653333 3889999999999999988 899999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeecCCcceEE--E
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYS--L 485 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~--~ 485 (1086)
.|+.|.+|.++. +.+.....+.+|...+.|+ ..... .......|+++.+||.+..+ ++..+.-..+.+.. +
T Consensus 77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999994 3344455677766555544 43222 22223689999999985555 33333333333333 3
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCC--ceeEEecCCCCceEEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCe
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
++.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGD 227 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecC
Confidence 4444334445666778888888865533 34567889999999999987554 5555554 8899999765332
Q ss_pred ---------------------eeeE----------EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--eeE
Q 001396 561 ---------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLL 607 (1086)
Q Consensus 561 ---------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~ 607 (1086)
.... +.||. +.|+++.|+|.+..|++++.|.++.+|...+. --.
T Consensus 228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv 304 (764)
T KOG1063|consen 228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV 304 (764)
T ss_pred CccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEE
Confidence 1111 22555 99999999999999999999999999988765 222
Q ss_pred EEEcC---CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC---CeeeeccccccceeeeEEccCCCceeccccCCe
Q 001396 608 TTIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 681 (1086)
Q Consensus 608 ~~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 681 (1086)
..... .+........-|+|+++.+++-+..|..++|...+. .....+.||...|..++|.
T Consensus 305 ~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-------------- 370 (764)
T KOG1063|consen 305 DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-------------- 370 (764)
T ss_pred EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec--------------
Confidence 22221 122334688999999999999999999999994433 3445677999999999996
Q ss_pred eeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCc
Q 001396 682 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 761 (1086)
Q Consensus 682 ~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~ 761 (1086)
|.|.++++.+.|.+-|+|-.... ......+..| +.|...++++++-+....+++++....+|+|+.+..-
T Consensus 371 --------psGeflLsvs~DQTTRlFa~wg~-q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 371 --------PSGEFLLSVSLDQTTRLFARWGR-QQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred --------CCCCEEEEeccccceeeeccccc-ccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 67889999999999999876522 2223333333 3589999999999976678889999999999976432
Q ss_pred c----------------ccCcccccc---cCCcee--cCCCCCc------------------------eeeec-----CC
Q 001396 762 L----------------TLSTEATTK---VPPRLY--QPRHGPQ------------------------FMVND-----TT 791 (1086)
Q Consensus 762 ~----------------~~~~~~~~~---~~~~~~--~~~~g~~------------------------~~~~~-----~~ 791 (1086)
. .+.+..... ..-.++ +..+|.. +.... .+
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 1 000000000 000000 1111111 10000 01
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeC------CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
..||...|.+++.+|+|+++|++.. ..|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|.++.+|
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLY 599 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEee
Confidence 3479999999999999999999861 3599999999999999999999999999999 99999999999999999
Q ss_pred EcCCcee----EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 866 NARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 866 d~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
....... ....+.|+.-|++..|+||++++||+|+|++|++|......... +... ........|+++++.|-
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~---i~~~-a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY---ISRF-ACLKFSLAVTAVAYLPV 675 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh---hhhh-chhccCCceeeEEeecc
Confidence 9865422 23467899999999999999999999999999999998753111 1111 11222247889998763
Q ss_pred C-----CEEEEE-eCCeEEEEEcCC-------ccc----eeccccCCccCEEEEEEeCC----------CCEEEEEECCC
Q 001396 942 Q-----TRFLLV-HETHLAIYEAEE-------LTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDG 994 (1086)
Q Consensus 942 g-----~~l~~~-~d~~i~vwd~~~-------~~~----~~~~~~~h~~~v~~l~fs~d----------g~~l~s~~~Dg 994 (1086)
- ..+++| ..|.|.+|.... +.. ...-..+|...|..++|+|- ...|++|+.|.
T Consensus 676 ~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 676 DHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred ccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence 2 245556 678999999651 110 00112356889999999964 23579999999
Q ss_pred cEEEEEcC
Q 001396 995 TLSIHEAS 1002 (1086)
Q Consensus 995 ~v~vWd~~ 1002 (1086)
+++++++.
T Consensus 756 ~vri~nv~ 763 (764)
T KOG1063|consen 756 SVRIFNVD 763 (764)
T ss_pred eeEEeecc
Confidence 99999875
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-42 Score=340.97 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=266.6
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC--C
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 402 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 402 (1086)
.|.+.+|..+.||+|++ +|||||.+|.++||+..++..+.. +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 36677999999999998 699999999999999999877655 8899999999999997 6
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
..+|+|+.||++++|++.+...+. .+.+|..+|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 6889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+++|.+ ||.++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999955 7889999999999999999999999999999999999999999999999986 888999999999999
Q ss_pred eEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 563 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
.++.+|. +-|+.++|+| .|.+|++++.|++++||...+..+++.+.+|.+ .|.++.+++|+..+++++.|.+++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999988 9999999998 688999999999999999999999999998855 599999999999999999999999
Q ss_pred EEE
Q 001396 642 ILE 644 (1086)
Q Consensus 642 iw~ 644 (1086)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=333.79 Aligned_cols=580 Identities=15% Similarity=0.158 Sum_probs=434.6
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCE
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 413 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 413 (1086)
..+..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++=..+--|.|+| . .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g--~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG--N-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC--c-E
Confidence 555555666788889999999999988777653 23567899998876554444433 3 3
Q ss_pred EEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ce----eEEeecCCcceEEEeec
Q 001396 414 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SR----TYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 414 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~~~~~ 488 (1086)
|.+|.- |+.++. .+.+|...|.-+.- -|. .++++..++.+.||+..++ .. +.-++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 333332 45677777776654 455 6888999999999998874 22 122233333477764 4
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
|+---+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4444457899999999999999999999999999999999999999999999876 778999999999999999976
Q ss_pred cccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCeeEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 569 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
. +.|++++|..||+.+++ |+..|.+.+||++..+++..+. .| ...+....|-|....+++++.|+.+++|-.+
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEee
Confidence 6 89999999999987655 6677999999999998887776 44 2358889999999999999999999988665
Q ss_pred CC----CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccccc
Q 001396 647 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 722 (1086)
Q Consensus 647 ~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 722 (1086)
++ +.++.-.||..+-.++.|. ...|..+.+++.|++.+.+.+......+...
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~--- 374 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQELG--- 374 (910)
T ss_pred CCCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhc---
Confidence 43 5566667899988888886 4678889999999999888754211111000
Q ss_pred CCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 723 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 723 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
.......++ .+.+ .. ...+ .-.+|..+
T Consensus 375 ----------~~~~~~~~k---------k~~~----------------------~~--------~~~~----k~p~i~~f 401 (910)
T KOG1539|consen 375 ----------QLHNKKRAK---------KVNV----------------------FS--------TEKL----KLPPIVEF 401 (910)
T ss_pred ----------ccccccccc---------cccc----------------------cc--------hhhh----cCCcceee
Confidence 000000000 0000 00 0000 11233333
Q ss_pred EeecCC----CEEEEEe--CCeEEEEEccCceE-EEEEc-----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 803 ALSKND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 803 ~~s~dg----~~l~~~~--dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
++.-.. .-++++. +..++.|++..... ...+. .....+++++.++ .|++.+.|+..|.|-+|++++|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence 333211 1123332 46688999876554 22332 2336789999999 9999999999999999999999
Q ss_pred eeEEEe---ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 871 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 871 ~~~~~l---~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
-....+ ..|.++|++++...-++.+++++.+|.+++||.+.... +...+-. ..+.++..+.....+++
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l~----~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRLG----SSITGIVYHRVSDLLAI 551 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeeccC----CCcceeeeeehhhhhhh
Confidence 988888 58999999999988889999999999999999998542 2222111 25788888888888888
Q ss_pred -EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCccc
Q 001396 948 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1026 (1086)
Q Consensus 948 -~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1086)
..|-.|.++|..+.+.++. +.||..+|+.++|||||++|++++.|++|++||+.++.++-.+. ....
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-----------vd~~ 619 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-----------VDSP 619 (910)
T ss_pred hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-----------cCCc
Confidence 5777899999999998887 66899999999999999999999999999999999999997765 1234
Q ss_pred ceEEEECCCCCCEEEEEeCC-CcEEEEc
Q 001396 1027 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1053 (1086)
Q Consensus 1027 ~~~~~~~p~~~~~l~~~~~d-g~v~vw~ 1053 (1086)
+.++.|+| +|++||++..| ..|++|-
T Consensus 620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 57899999 79999999999 6899996
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=307.98 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=268.7
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
...++|+||...|.++.|++|.++ |+++|.||.+.|||..+...++. ++-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 445899999999999999999996 99999999999999999887765 3335689999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCC---ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+|.|+++|+|+-|+...||++.+.+ ..+...++.+|++.+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 9999999999999999999998652 2344446889999999999999875 899999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.++..+.+|...|.+++|.|+|.-+++|+. ++..++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence 999999999999876 7789999999999999999999999999999999999999999999999986 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
++..+.+..|.... ...+|++++|+..|++|++|..|.++.+||.-.++....+.+|.+ .|.++..+|||.-+++|+
T Consensus 258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 99999998888433 457899999999999999999999999999999999999997754 699999999999999999
Q ss_pred CCCcEEEEE
Q 001396 636 NENRIKILE 644 (1086)
Q Consensus 636 ~dg~i~iw~ 644 (1086)
.|..++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-39 Score=307.37 Aligned_cols=298 Identities=19% Similarity=0.280 Sum_probs=256.1
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+.-+|++|++.|+.++..+.+..++.+++.|.++.+|++.......- . ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~--~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------V--PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------c--eeeeeeccceEecceEEc
Confidence 45678999999999999999888999999999999999876422211 1 112288999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC-
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 478 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h- 478 (1086)
+||.+.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++||. -|.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt-~g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNT-LGVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeee-cccEEEEEecCC
Confidence 999999999999999999999996555 6889999999999999999 7999999999999995 45566666544
Q ss_pred -CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 479 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 479 -~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999988899999999999999999999999999999999999999999999999876 7789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC-------CCCCceEEEecCCCE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 630 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 630 (1086)
.++.+..+... ..|.+++|+|+...|+. ..+..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998777653 59999999998655544 4455699999999988877754321 234567899999999
Q ss_pred EEEEECCCcEEEEECC
Q 001396 631 LAVIANENRIKILETP 646 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~ 646 (1086)
|+.|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999864
No 20
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-41 Score=334.03 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.7
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
|.+.+|..+.||+|++.||+|+-+|.++||+..+...+. +|.+|...|.++.|+|....+.++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456899999999999999999999999999999875444 78999999999999998422379999999999999999
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+.+........+|...|.+++|.+||.++++|+-
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6789999999999999999999999999999999999999999999999987
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 626 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 626 (1086)
|..-++||+++|+++..+.+|. .+|.+++|+|+|..+++||.|++++|||++..+.+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 7778999999999999999988 9999999999999999999999999999999999999987754 599999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 627 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
.|.+|++++.|+++++|...+..+++.+.||.+.|.++.++ +|++.+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999986 78999999999999999
Q ss_pred ee
Q 001396 707 EK 708 (1086)
Q Consensus 707 w~ 708 (1086)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-38 Score=325.65 Aligned_cols=481 Identities=17% Similarity=0.259 Sum_probs=361.1
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
.+++..|++.|.++.|+|.... +.++-..|.|.|||.++..+++.+. -.+.+|.+..|-+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfe-------------------V~~~PvRa~kfia 65 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFE-------------------VSEVPVRAAKFIA 65 (794)
T ss_pred hhHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeee-------------------ecccchhhheeee
Confidence 3456679999999999999985 7777888999999999999887633 3567999999999
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeecCC
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG 479 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~ 479 (1086)
-.+++++|++|..|+||+.++++.++ .+.+|.+-|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 99999999999999999999998776 7899999999999999988 8999999999999999865 7789999999
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC--CEEEEEeeCCCCceeEEEEeCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
..|.+++|+|. |...+++++-|++|++|.+.+..+..++.+|...|+++.+-+-| .+|++|+. |..+.+||.+
T Consensus 141 HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQ 215 (794)
T KOG0276|consen 141 HYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQ 215 (794)
T ss_pred eEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecc
Confidence 99999999987 55799999999999999999999999999999999999998755 58999875 7889999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+..+++++.||. ..|+.++|+|.-..+++|++||+++||+..+.++..++... ...+.+++-.+.++.+++|.+.
T Consensus 216 tk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 216 TKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred hHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccC
Confidence 999999999999 99999999999999999999999999999999988888755 3468999999988899999988
Q ss_pred CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccc
Q 001396 638 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 717 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 717 (1086)
|.|.+ .+....+...+ .+.|+.+ |..
T Consensus 291 g~i~v-~lgreeP~vsM----------------------------------d~~gKIi-----------wa~-------- 316 (794)
T KOG0276|consen 291 GSVTV-KLGREEPAVSM----------------------------------DSNGKII-----------WAV-------- 316 (794)
T ss_pred CcEEE-EccCCCCceee----------------------------------cCCccEE-----------EEc--------
Confidence 87765 33222222111 1112221 211
Q ss_pred cccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCC-CC
Q 001396 718 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN-SQ 796 (1086)
Q Consensus 718 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 796 (1086)
.+.|..+..- +.+.++ ++..|+++ ....++.+ -+
T Consensus 317 ----------~~ei~~~~~k-------s~~~~~---------------------------ev~DgErL-~LsvKeLgs~e 351 (794)
T KOG0276|consen 317 ----------HSEIQAVNLK-------SVGAQK---------------------------EVTDGERL-PLSVKELGSVE 351 (794)
T ss_pred ----------Cceeeeeece-------eccCcc---------------------------cccCCccc-cchhhhccccc
Confidence 0111111110 000000 11111111 00000000 11
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 797 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
--...++.||+|+++++++||.-.||..-..+ ....+.-....|++ |....|+-..++.|+++ ++.+....+
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi 423 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI 423 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence 12235788999999999999999998743222 12445667889999 76777777778899998 666665555
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEE
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 956 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw 956 (1086)
...-. +..--.|.+|...+ ++.+++||-++++... ..+- ....+.|+.+|.+++.+.|...+++
T Consensus 424 ~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~v------~~k~v~w~d~g~lVai~~d~Sfyil 487 (794)
T KOG0276|consen 424 RPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVR-----RIEV------TSKHVYWSDNGELVAIAGDDSFYIL 487 (794)
T ss_pred ccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEE-----EEee------ccceeEEecCCCEEEEEecCceeEE
Confidence 42111 11222355555555 5559999999866332 2222 2347999999999999888876666
Q ss_pred EcC
Q 001396 957 EAE 959 (1086)
Q Consensus 957 d~~ 959 (1086)
...
T Consensus 488 ~~n 490 (794)
T KOG0276|consen 488 KFN 490 (794)
T ss_pred Eec
Confidence 654
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.7e-38 Score=296.71 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=266.8
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 488999999999999999999999999999999998876444 4566778999999999999 89999999999999
Q ss_pred eCCCC------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCE
Q 001396 465 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 537 (1086)
Q Consensus 465 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 537 (1086)
++.+. +..+.+.+|.+.+.++.|.. ...|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34577999999999999964 34899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+++|+. |...++||++.+.++++|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 7779999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++..+ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999996 78888999
Q ss_pred ccccCccceee
Q 001396 698 VEAENKSEVEK 708 (1086)
Q Consensus 698 ~~~d~~i~vw~ 708 (1086)
|+.|.++|+|.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9.6e-36 Score=321.25 Aligned_cols=555 Identities=14% Similarity=0.156 Sum_probs=402.4
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+.+.+.|+|++-+.+-- ++|.| ..|.+|. .|+.+.. ...+|...|.-+.. =|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~~--fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLLP--FGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEee--ecce
Confidence 46778999998877653 23333 4566654 4543332 25567777776643 4889
Q ss_pred EEEEeCCCEEEEEEecCC-CccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 405 LGVAYSKHIVQLYAYHGG-SDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
++++..++.+.||+..++ +.......+..-. +.|+++. +|.----.++.|+.+|.+++|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999885 2211111222222 2266664 454321157889999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
+++.-+|-- ..++.|..+|+|.+++++..+.+..+....++|++++|..||..+.+.+.. .|.+.+||++..+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~---~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC---CceEEEEEcCCCeee
Confidence 999875544 489999999999999999999999999888999999999999988776542 567999999998888
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--Ce--eEEEEcCCCCCCCCceEEEe-cCCCEEEEEECC
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIANE 637 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~d 637 (1086)
......+ .+.+....|.|....+++++.|+.+++|=.++ |. .++... ++..+..++.|. .+|.++.+++.|
T Consensus 281 ~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 281 NVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred eeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccC
Confidence 7776322 48899999999999999999999998885554 32 233333 344567889988 689999999999
Q ss_pred CcEEEEECCCCCeeeeccc-------ccccee---eeEEccCCCceeccccCCeeeecCCC-CCCcccceeccccCccce
Q 001396 638 NRIKILETPESNSVDAAGV-------LSDNLR---KLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~-------~~~~v~---~~~~~p~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s~~~d~~i~v 706 (1086)
++++.+++.....-+.+.. ....+. ...+.|. ..+++.... ....+.+...-.+...+.
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i----------~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI----------VEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc----------eeeecccchhhhhcceeEEecCcceEEE
Confidence 9999887663311111100 000000 0000000 011111111 122333444445567888
Q ss_pred eeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCcee
Q 001396 707 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 786 (1086)
Q Consensus 707 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 786 (1086)
|+......++...-.-+.......+++++.++-|+..+.|.+.|.|.+|+++.+-. ..
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------------r~ 484 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH----------------------RK 484 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee----------------------ec
Confidence 98765544333222221222456789999999999999999999999988765421 11
Q ss_pred eecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 787 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 787 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
.+. ..+.|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++..+. ...++|.+..|-.|+++
T Consensus 485 sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 485 SFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVV 561 (910)
T ss_pred ccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEE
Confidence 110 1124899999999998888888887 8999999999888777776 456788888888 77799999999999999
Q ss_pred EcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 866 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+. .+.+.+.|||+|.+|
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSFSPNGDFL 632 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEECCCCCEE
Confidence 99999999999999999999999999999999999999999999996643322221 258899999999999
Q ss_pred EEE-eC-CeEEEEEcC
Q 001396 946 LLV-HE-THLAIYEAE 959 (1086)
Q Consensus 946 ~~~-~d-~~i~vwd~~ 959 (1086)
|+. .| ..|++|.-.
T Consensus 633 AT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 633 ATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEEecCceEEEEEch
Confidence 995 33 569999754
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.7e-38 Score=337.49 Aligned_cols=278 Identities=18% Similarity=0.273 Sum_probs=244.0
Q ss_pred cCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeee---eeeeee---------ecccccee
Q 001396 313 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVW---------DIGACSML 380 (1086)
Q Consensus 313 ~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~---------~~~~~~~~ 380 (1086)
...+|.-|..++..-...++|+.||+|+. +||.|..|..|++|.+...++... ..+.-- +...-...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56788999999997777999999999998 799999999999999985432110 000000 11111122
Q ss_pred eeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc
Q 001396 381 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 460 (1086)
Q Consensus 381 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~ 460 (1086)
.....+.||+++|..+.|+|+.++|++++.|+++++|.+.+..++. .+.||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999987655 6789999999999999998 8999999999
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
.++|......+++.+.+|.+.|.|+.|+| +..++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999999999999999999999999987 5569999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
|+. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 986 7889999999999999999997 999999999999999999999999999987543
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=287.82 Aligned_cols=293 Identities=17% Similarity=0.280 Sum_probs=253.3
Q ss_pred CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEe
Q 001396 340 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 419 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~ 419 (1086)
..-+||+++.|.+|++|...+|.+.++ +....+.|..+.+.||++.||+++... |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 335899999999999999999999876 444678999999999999999997664 999999
Q ss_pred cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE
Q 001396 420 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 499 (1086)
Q Consensus 420 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 499 (1086)
.++..- +..++.+|...|+++.|..||+ ++++||+||+++|||++...+.+.++ |..+|+++..+|. ...|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEee
Confidence 998753 5568999999999999999999 89999999999999999977777775 7899999999774 4589999
Q ss_pred EcCCeEEEEEcCCCceeEEecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC------eeeeEEecccccC
Q 001396 500 SVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG------AIKRTYQGLQLQH 572 (1086)
Q Consensus 500 s~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~ 572 (1086)
..+|.|++||+....+...+.. ....+.+++..|||.+++++.. .|..++|++-++ +++.+++.|.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~--- 215 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN--- 215 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence 9999999999998877665544 4458999999999999999875 778999998764 3455566666
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+.+..+.++||+++|+++|.|.+++||+.++. +....+. ++...+..++||.||++|++++.|+.+++|++..++.+
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 88999999999999999999999999999988 4444444 44567999999999999999999999999999999999
Q ss_pred eeccccccceeeeEEc
Q 001396 652 DAAGVLSDNLRKLSVN 667 (1086)
Q Consensus 652 ~~~~~~~~~v~~~~~~ 667 (1086)
....+|.....|++..
T Consensus 294 ~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 294 RQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCcccccEEEEee
Confidence 9999998887777654
No 26
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1e-35 Score=314.58 Aligned_cols=591 Identities=14% Similarity=0.168 Sum_probs=405.3
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCc-EEEEEEeCCCcEEEEeCCCC--cee
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTG--SRT 472 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-l~l~s~~~d~~i~iwd~~~~--~~~ 472 (1086)
.+|.|. ..+|.| ....|.+||..... ....+.||.++|+|+.|-|+.+. .++++|+.|+.|++|.++.. .++
T Consensus 20 ~sw~~~-~~vafG-a~~~Iav~dp~k~~---i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i 94 (764)
T KOG1063|consen 20 SSWGPG-GLVAFG-AGPAIAVADPEKIL---IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI 94 (764)
T ss_pred cccccc-ceEEec-CCceEEEeCcccce---eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence 345443 355555 45679999987652 23368899999999999988761 15899999999999998843 345
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCC--ceEEEEEec-CCCEEEEEeeCCCC
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKEG 547 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~--~i~~~~~s~-d~~~l~~~~~~~~~ 547 (1086)
.++.+|...+.++.- ......+.+.|+++.+||.+..+. ...+....+ -..++++.+ .+.++.+++.+
T Consensus 95 ~~~~g~~~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--- 167 (764)
T KOG1063|consen 95 YTIQGHCKECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--- 167 (764)
T ss_pred EeecCcceeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence 677777766666532 111222337999999999855441 112222222 234566666 45555555532
Q ss_pred ceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCC---EEEEEECCCcEEEEEcCCCe-----------------
Q 001396 548 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ----------------- 605 (1086)
Q Consensus 548 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~----------------- 605 (1086)
+..|.++.-... ..+..+.||. +.|.+++|...+. +++++|.|..||||.+.-+.
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 566777765433 5567788888 9999999987654 77889999999999875322
Q ss_pred ----eEEEEc--------CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeee--ecc-----ccccceeeeEE
Q 001396 606 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----VLSDNLRKLSV 666 (1086)
Q Consensus 606 ----~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----~~~~~v~~~~~ 666 (1086)
....+. .-++...|+++.|+|.+..|++++.|.++.+|...+..-+. ..+ +.......
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g--- 321 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWG--- 321 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceee---
Confidence 111111 12456789999999999999999999999999877653222 221 11111222
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEe
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 746 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 746 (1086)
+..+|++..+++-+..|..++|. +.+.......... .+|...|+.++|.|.|.++++.
T Consensus 322 -------------------~lw~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 322 -------------------GLWSPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred -------------------EEEcCCCCEEEEecccCcEEEEe--ccCccceeecccc-ccccccceeeeecCCCCEEEEe
Confidence 22267888899999999999998 2233333332222 4699999999999999999999
Q ss_pred eccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEcc
Q 001396 747 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVM 825 (1086)
Q Consensus 747 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~ 825 (1086)
+.|.+-|++---.++. -|.- +.... -|...+.|++|-+....+++|.| ..+|+|+..
T Consensus 380 s~DQTTRlFa~wg~q~-------------~wHE-----iaRPQ----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQ-------------EWHE-----IARPQ----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccceeeeccccccc-------------ceee-----ecccc----cccccceeeehccCCceeeecccceeeeeecCc
Confidence 9999988874221100 0221 11111 27888899999885555666654 668888752
Q ss_pred C-------------------------------------------ceE---------------------------------
Q 001396 826 T-------------------------------------------FKT--------------------------------- 829 (1086)
Q Consensus 826 ~-------------------------------------------~~~--------------------------------- 829 (1086)
. |..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 1 110
Q ss_pred EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 001396 830 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 904 (1086)
Q Consensus 830 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i 904 (1086)
++.+.+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|.-.|+.|+|||||++|+++|.|+++
T Consensus 518 v~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred hHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 113467888999999999 999999987653 78999999988888999999999999999999999999999999
Q ss_pred EEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCc--cceec-cccCCccCEEEEEE
Q 001396 905 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVPISQATF 980 (1086)
Q Consensus 905 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~v~~l~f 980 (1086)
.+|........... ....+.|.. -|.++.|+||++++|+ +.|.+|+||..... +.+.. -...+...|+.+++
T Consensus 597 sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred Eeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 99998654432222 223444443 5899999999999998 68999999999877 55544 23456889999999
Q ss_pred eC-----CCCEEEEEECCCcEEEEEcCCCcee---eeeccccccCCC-CccCcccceEEEECCC---------CCCEEEE
Q 001396 981 SC-----DCRMVFTSFVDGTLSIHEASNLEVQ---CRILSTAYLRPT-TSCLHVYPHAIAAHPL---------KPTQFAV 1042 (1086)
Q Consensus 981 s~-----dg~~l~s~~~Dg~v~vWd~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~p~---------~~~~l~~ 1042 (1086)
.| .+..+++|-..|.|.+|....-... ..+.....++.. .+... +..+.|.|- +...|++
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a--V~rl~w~p~~~~~~~~~~~~l~la~ 750 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSA--VNRLLWRPTCSDDWVEDKEWLNLAV 750 (764)
T ss_pred eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHh--hheeEeccccccccccccceeEEee
Confidence 87 2337788889999999997622211 111111111111 11222 345677762 2345799
Q ss_pred EeCCCcEEEEccC
Q 001396 1043 GLTNGEVYVIEPN 1055 (1086)
Q Consensus 1043 ~~~dg~v~vw~~~ 1055 (1086)
|++|..++++++.
T Consensus 751 ~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 751 GGDDESVRIFNVD 763 (764)
T ss_pred ecccceeEEeecc
Confidence 9999999999874
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-35 Score=315.04 Aligned_cols=583 Identities=16% Similarity=0.235 Sum_probs=398.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
++..+..|..++|+|... ++.++-..|.|.+||.+-|.++.. +.+|.++|..++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 455567899999999987 588888899999999999998876 778999999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
++++|++|..|+||+..+.+++. ++.||-+.|..+.|++.-. +++|+|+|.+|+||++.+++++..+.||...|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987766 6889999999999999877 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
|..|+|.+| .++++|-|.+||+||+...+....-.+ ++.-...+..+. .-++-...--...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998765 899999999999999876544322211 000001111110 0011001112345
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.+.||. ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|++|
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 677887 89999999999999999999999999999765543333344556679999999999999999999999999
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
|+...+.+..++...+..+.++..|. .++++. +.|+.+.+|.++.
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~----------------------lNLfAA-gHDsGm~VFkleR------------ 322 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPE----------------------LNLFAA-GHDSGMIVFKLER------------ 322 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCC----------------------cceeee-ecCCceEEEEEcc------------
Confidence 99999999999988899999988754 444443 3445556666541
Q ss_pred CcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCC-CCCCCeeEE
Q 001396 724 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS-NSQEAVPCF 802 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~v~~l 802 (1086)
..++ .+++ +..++..- +..|+-+|+....- .....+... ....++.++
T Consensus 323 ----Erpa--~~v~--~n~LfYvk-d~~i~~~d~~t~~d----------------------~~v~~lr~~g~~~~~~~sm 371 (1202)
T KOG0292|consen 323 ----ERPA--YAVN--GNGLFYVK-DRFIRSYDLRTQKD----------------------TAVASLRRPGTLWQPPRSL 371 (1202)
T ss_pred ----cCce--EEEc--CCEEEEEc-cceEEeeecccccc----------------------ceeEeccCCCcccCCccee
Confidence 1112 2222 22233333 66777777654321 111111110 124577889
Q ss_pred EeecCCCEEEEEe---CCeEEEEEccCceEEEE---EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 803 ALSKNDAYLFSAS---GGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 803 ~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
.++|....+..++ .|...++.+........ -........++-... +++.+---.+..+.+=++.+ +..+.+
T Consensus 372 sYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N-~vtkkl 448 (1202)
T KOG0292|consen 372 SYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKN-KVTKKL 448 (1202)
T ss_pred eeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccc-hhhhcc
Confidence 9999776666664 36666665543211000 000111222222222 22333222244455555443 222222
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEE
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 956 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw 956 (1086)
.-- ..+..+-+.-+|.+|+. ....|.++|++..+... .++. ..+..+.||+|+.++|.-+..+|.+.
T Consensus 449 ~~~-~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~--si~~--------s~vkyvvws~dm~~vAll~Kh~i~i~ 515 (1202)
T KOG0292|consen 449 LLP-ESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVG--SIKV--------SKVKYVVWSNDMSRVALLSKHTITIA 515 (1202)
T ss_pred cCc-ccccceeeccCccEEEE--cCCeEEEEEeecceEEE--EEec--------CceeEEEEcCccchhhhcccceEEEE
Confidence 211 23455667777776664 33459999999754322 2222 15788999999999999888899999
Q ss_pred EcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc--eeeeeccccccCCCCccCcccceEEEEC
Q 001396 957 EAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAH 1033 (1086)
Q Consensus 957 d~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1086)
+.+ -+.+.+ -| .-+|.+-+|..||-+|.+... .|+ |-+.+|. .+.++. .+++++.+
T Consensus 516 ~kk-L~l~~s---ihEtiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTLd-----------~~iyitkv--- 574 (1202)
T KOG0292|consen 516 DKK-LELLCS---IHETIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTLD-----------KPIYITKV--- 574 (1202)
T ss_pred ecc-hhheec---chheeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEecc-----------cceEEEEe---
Confidence 865 233332 23 557888899999988887753 343 3333332 222332 34555555
Q ss_pred CCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1034 PLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1034 p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.|+.+.+-..|+.+.+.++...+
T Consensus 575 --~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 575 --KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred --eCCEEEEEecCCCeEEEeechHH
Confidence 47889999999999998886554
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-35 Score=306.65 Aligned_cols=465 Identities=15% Similarity=0.207 Sum_probs=344.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|+..|.++.|+|....++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999988777 5666778999999998877 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
..|++.++.|..|.+.|++++.+|.. .+++++|.|-+|++||++.. .+..++.+|.+-|..++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998754 69999999999999999875 45678999999999999999 6678888887
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC--CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
|++|.+|.+.+..+..++++|. ..|+++++-+-| +++++|++|.+|+|||.++..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 7789999999999999999998 999999997654 7999999999999999999999999998755 5899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
+.|+|.-..+++|+.||+++||+..+-+....+.-.-+.
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR----------------------------------------- 271 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER----------------------------------------- 271 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-----------------------------------------
Confidence 999999999999999999999998876555444433333
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCC
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
+.+++..+.+..++.|..+|.+.+=
T Consensus 272 -----------------------------vW~I~~~k~~~~i~vG~Deg~i~v~-------------------------- 296 (794)
T KOG0276|consen 272 -----------------------------VWCIAAHKGDGKIAVGFDEGSVTVK-------------------------- 296 (794)
T ss_pred -----------------------------EEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence 4444444444445555555544431
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC--CeEEEE------EccCceEEE----EEcCCCCCeEEEEEcCCC
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD 849 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d 849 (1086)
.......+..++.|+.+-+... -.+.+- ++..|+.+. .+....-....++-+| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0111122333333433222211 001111 222233221 1111111234677889 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
|+++++++ ||.-.||..-.- -..+.+.-....|++|....++--.++.|+++ +..+..+ .+..
T Consensus 363 GrfV~Vcg-dGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k--si~~------- 425 (794)
T KOG0276|consen 363 GRFVVVCG-DGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK--SIRP------- 425 (794)
T ss_pred CcEEEEec-CccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc--cccc-------
Confidence 98888765 888888863211 11245566778999998888888778889988 3322111 1111
Q ss_pred CCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 930 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
-..+.+--.|.+|.+..++.+++||..+++.++.+.. ....+.|+.+|.+++.++.|. .++..+
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS-FYILKF 489 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc-eeEEEe
Confidence 0112333456677778899999999999999887432 456789999999999887664 455443
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-36 Score=283.47 Aligned_cols=295 Identities=16% Similarity=0.188 Sum_probs=247.4
Q ss_pred cccccceEEEEEecCC-ceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE
Q 001396 725 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 803 (1086)
Q Consensus 725 ~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~ 803 (1086)
.+|.+.|..++..+.+ ..++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 4599999999998874 55667788999999998754 2333432322 33 4999999999
Q ss_pred eecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc--cc
Q 001396 804 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 880 (1086)
Q Consensus 804 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~--h~ 880 (1086)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|++|+... .+..++.. |+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 899999999999999999985 44444443 37
Q ss_pred CCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEE
Q 001396 881 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 957 (1086)
Q Consensus 881 ~~v~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd 957 (1086)
+-|.|+.|+|+ ..+++++|.|++|++||+.+ .+..+.+.+|.. .++.+++||||.+.++ +.||.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 78999999999999999998 335556666665 8999999999999999 6899999999
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1037 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1037 (1086)
+..++++.. .+|...|.+++|+|+.-.|+.+ .+-.|+|||++++..+..+.+-..-+ ........+++++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999999764 4679999999999987666655 56679999999999998877443333 2234456778999999 89
Q ss_pred CEEEEEeCCCcEEEEccC
Q 001396 1038 TQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1038 ~~l~~~~~dg~v~vw~~~ 1055 (1086)
..|+.|..||.|++|++.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999985
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-36 Score=304.82 Aligned_cols=345 Identities=19% Similarity=0.269 Sum_probs=289.0
Q ss_pred CccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCC--CceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
+|....+.+. |+.+|.+++|+|-..-++|+|+.|-+.++|++.. +.......++ .|...-- .-...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCc
Confidence 5666777777 9999999999997765799999999999999874 1111100000 0000000 011134689
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988653 33 6789999999999999999 89999999999999999999999
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.-|..+-..+.|-. ...+++++.|+.|+++.+...++..++.+|.++|.++.|.|.|.+|++++. |++++|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866677642 247999999999999999999999999999999999999999999999986 888999
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCC---------CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|+.........++.|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|++++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999998999999888 899999999975 47899999999999999999999999765 457999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999987776554
Q ss_pred ceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 705 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 705 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
..+.|..+.|+.+|..+.++..||.+++.|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2334677888888888888888888887765
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-37 Score=298.51 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=268.1
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
+..+.+.||...|+.+-|+|+-. +.++++.|++|++||..+|+.... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 55677889999999999999986 799999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+..|++||+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. +++|++.|.+|+.|++.+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233336779999999999999998 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC---------------CEEEEEee
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT 543 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~~ 543 (1086)
...|..+.. ..||.++++++.|.+|++|-+.+..+...+..|..+|.+++|.|.. .++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999987 6689999999999999999999999999999999999999997732 36666665
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
|+.|++||+.++.++.++.+|. ..|..++|+|.|+||+++.+|+++++||++++++...+..+.+ .+.++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7889999999999999999999 9999999999999999999999999999999999999998766 489999
Q ss_pred EecCCCEEEEEECCCcEEEEEC
Q 001396 624 FNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
|+.+..++++|+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999964
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=7.4e-33 Score=281.81 Aligned_cols=539 Identities=12% Similarity=0.152 Sum_probs=384.2
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
+-+-+.-+.|+. -=..+-+-|.|..+..++ +.+.+++++...+.. +.||+..|.|+
T Consensus 55 ~LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~ 110 (626)
T KOG2106|consen 55 KLEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCM 110 (626)
T ss_pred eeEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEE
Confidence 334445555664 223455677776433333 456677775533332 77999999999
Q ss_pred EECCCCCEEEEEeCCC--------EEEEEEecCCCccccceEeccccccEeEEEecCCCC--cEEEEEEeCCCcEEEEeC
Q 001396 397 VWSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 397 ~~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~--~l~l~s~~~d~~i~iwd~ 466 (1086)
+.+||.-++|+|-..| .++|||..+-..+ ..+......|.|++|++-.. .+..+--+.+..+.|||.
T Consensus 111 ~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL---~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW 187 (626)
T KOG2106|consen 111 AVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL---HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDW 187 (626)
T ss_pred eecCCceeeccCcccccCCCcCCCeeeecccccceee---eeeccccccceeeeecccCCCceEEEecCCCccccchhhc
Confidence 9999999999874433 5999997764433 35666677899999998543 223333456677999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE---ecC-CCCceEEEEEecCCCEEEEEe
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
..+......+..+..|....|+|... -++.....|.+.+|+++.+..... +.. ...-|.+++|.++|..+-.
T Consensus 188 qk~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-- 263 (626)
T KOG2106|consen 188 QKKAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-- 263 (626)
T ss_pred hhhhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee--
Confidence 99988888887888899999988643 455556678999999988765443 222 2257999999999986643
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
|.++.|.||+..+.+..+....|. +.|.+++.-.+|. |++|+.|..|..|| ..-+.++..+.+.....+..+
T Consensus 264 ---DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 264 ---DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred ---cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEE
Confidence 337889999998877776666655 9999999999986 55599999999999 555556555555444556655
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 623 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+-...+ |++|+..+.|..=.++++-.+..
T Consensus 336 ~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v------------------------------------------------- 364 (626)
T KOG2106|consen 336 AEGKGD--ILVGTTRNFILQGTLENGFTLTV------------------------------------------------- 364 (626)
T ss_pred ecCCCc--EEEeeccceEEEeeecCCceEEE-------------------------------------------------
Confidence 543322 66776655554433332211110
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
.+|......++..|+...+++++.|+.+++|+ ..+ ..|...
T Consensus 365 ----------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~-- 405 (626)
T KOG2106|consen 365 ----------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI-- 405 (626)
T ss_pred ----------------------EecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE--
Confidence 12556677788889999999999999999997 111 123211
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
-..+..|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..+++++.|+| +|.+||+|+.|+.
T Consensus 406 ------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 406 ------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNH 470 (626)
T ss_pred ------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCe
Confidence 35678899999999 888887 69999999999666555444 88999999999 9999999999999
Q ss_pred EEEEEcCCce-eEEEe-ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee---------ee---eeccCCCc
Q 001396 862 ILIYNARSSE-VISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVM 927 (1086)
Q Consensus 862 v~iwd~~~~~-~~~~l-~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~---------~~---~~~~~~~~ 927 (1086)
|+||.+.... ..... +.|..+|+.+.||+|+++|.+-+.|-.|..|.-..-..... .+ +....+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~-- 548 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG-- 548 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--
Confidence 9999987643 32222 22447999999999999999999999999994332111110 00 111111
Q ss_pred cCCCCceEEEEecCCCEEEEEe-CCeEEEEEcCCccc--eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 928 TLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 928 ~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
.....+..++-|.+.+++|++. .|.|++|...--+. ......+|.+-|++++|+-+..++++.+.|.+|..|++
T Consensus 549 s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 549 SDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 1113567778888889999974 58999999874332 22236689999999999999999999999999999986
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.3e-35 Score=285.58 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=288.6
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEE
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 509 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 509 (1086)
.|..|++.|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.| +.+|.+|++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 5789999999999999777 8999999999999999999999999999999999999 45889999999999999999
Q ss_pred cCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE
Q 001396 510 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 510 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+++++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999999888889999999999999999986 7789999999988889999988 99999999999999999
Q ss_pred EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccC
Q 001396 590 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 669 (1086)
Q Consensus 590 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~ 669 (1086)
+..||+|++|++.+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999876553 3567899999999999999998888776655533321110
Q ss_pred CCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc
Q 001396 670 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 749 (1086)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 749 (1086)
.+..+.....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~e- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQE- 283 (399)
T ss_pred ---------------------------------------------------------------------CCccccccch-
Confidence 0000000000
Q ss_pred ceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCce
Q 001396 750 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 828 (1086)
Q Consensus 750 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~ 828 (1086)
.....|..+.++..-.+.|+|+ ||+|.|||+...+
T Consensus 284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0223344455566667778888 8999999998877
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 829 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 829 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|++++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 666555 888899999986 46889999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001396 909 VD 910 (1086)
Q Consensus 909 ~~ 910 (1086)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 74
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=287.11 Aligned_cols=335 Identities=15% Similarity=0.191 Sum_probs=290.7
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...+.+|.+|+++|.+++.+|+.+ ++|+|+.|....||+..+|..... +.+|...|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345678899999999999999776 899999999999999999997765 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
||.||.+||+|+.+|.|+||+..++.... .+.+..+.+.-+.|+|-+. +|+.|+.||.+.+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987655 4445667788999999888 899999999999999999888999999
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
|+.++++=.|.| +|+.++++..||+|++|+..++.+....... .....++.++.++..++.|.. ++.+++-+.
T Consensus 189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 999999999955 6899999999999999999999988877643 446778899999999998876 667888888
Q ss_pred CCCeeeeEEec--------ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 557 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 557 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.+|+.+....+ +......|.++.++..-+..++|+-||+|.|||+...++........ .|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-c
Confidence 88888777663 22122345555566666788999999999999999888877776553 489999998 7
Q ss_pred CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceee
Q 001396 629 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~ 708 (1086)
.+|++++.+|.|+.||.++++......+|...|.+++++ |+.+++++++.|++.++|+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999996 7889999999999999987
Q ss_pred e
Q 001396 709 P 709 (1086)
Q Consensus 709 ~ 709 (1086)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 4
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=288.69 Aligned_cols=298 Identities=18% Similarity=0.259 Sum_probs=269.0
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
..|-++.+.+.||.+.|.|+++.|-++ ++++|+.|++|+|||+.+|++..+ +.||-..|.
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr 197 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVR 197 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheee
Confidence 445688899999999999999999887 699999999999999999998876 889999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
.+++|+-..||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-+ .|++|+.|.+++|||+++...+..
T Consensus 198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred eeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEE
Confidence 99999999999999999999999999998887 5789999999999999988 899999999999999999999999
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
+.||..+|.++.+.+. ...+++||.|++|++||+..++....+..|...+.+++.+|....+++++. ..|.-|
T Consensus 273 l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w 345 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQW 345 (460)
T ss_pred ecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceec
Confidence 9999999999988553 358999999999999999999999999999999999999999999999874 359999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc---CCC---CCCCCceEEEecCC
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKNG 628 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~~ 628 (1086)
++..|..+..+.+|. ..|++++.+.|+ ++++|+++|.+.+||.++|...+... ..+ ....|.+.+|...|
T Consensus 346 ~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred cCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 999999999988888 899999998875 88999999999999999987665542 111 22457899999999
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 001396 629 TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~ 648 (1086)
..|+++..|.+|++|.-+..
T Consensus 422 ~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ceEEeccCCcceEEEecccc
Confidence 99999999999999986643
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=267.42 Aligned_cols=296 Identities=17% Similarity=0.259 Sum_probs=253.1
Q ss_pred ccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccc
Q 001396 493 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQL 570 (1086)
Q Consensus 493 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~ 570 (1086)
.-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+++++ ++.+|.+|.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~- 83 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT- 83 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC-
Confidence 34899999999999999999999999999999999999999999999987 5579999999765 588999988
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe
Q 001396 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 650 (1086)
Q Consensus 571 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 650 (1086)
..|.++.|..+|+++++||+||+++|||++...+.+.+... .+|+++..+|+...|+++..+|.|++||+.+...
T Consensus 84 --kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 --KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred --CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 89999999999999999999999999999996666666543 5699999999999999999999999999987643
Q ss_pred eeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccc
Q 001396 651 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 730 (1086)
Q Consensus 651 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 730 (1086)
...+- |+ ....
T Consensus 159 ~~~li-------------------------------------------------------------------Pe--~~~~ 169 (311)
T KOG0315|consen 159 THELI-------------------------------------------------------------------PE--DDTS 169 (311)
T ss_pred ccccC-------------------------------------------------------------------CC--CCcc
Confidence 32221 11 2356
Q ss_pred eEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCE
Q 001396 731 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 810 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 810 (1086)
|+++.+.|||..++++...|..++|++...... ....+ +. +...|..-+..+.+|||+++
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l~P-----~~----k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SELEP-----VH----KFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccceE-----hh----heecccceEEEEEECCCCcE
Confidence 889999999999999999999999998653210 00000 11 11248899999999999999
Q ss_pred EEEEe-CCeEEEEEccCc-eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEE
Q 001396 811 LFSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 888 (1086)
Q Consensus 811 l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~ 888 (1086)
||+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|.....|++.
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99998 899999999988 66778889999999999999 9999999999999999999999999999999998888876
Q ss_pred e
Q 001396 889 S 889 (1086)
Q Consensus 889 s 889 (1086)
.
T Consensus 309 n 309 (311)
T KOG0315|consen 309 N 309 (311)
T ss_pred e
Confidence 4
No 37
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.1e-31 Score=279.85 Aligned_cols=550 Identities=12% Similarity=0.119 Sum_probs=392.5
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
...|.++|||.+.+.||.+-.+|.|.||++..+=... ..+.++. ..|.+++|++.++ |.|.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 3789999999999999999999999999999864333 2455654 4799999996664 88999999999999999
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE--EecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
++.+..+....+.|++++.++.. ..++.|+.||.+..++...+.... .+....+++.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997754 589999999977777776665544 34455679999999999999999986
Q ss_pred CceeEEEEeCCCCeeeeEEec----cc-ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 547 GESFLVEWNESEGAIKRTYQG----LQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~----~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
|+.|++||..++..+..... .. ....-|.++.|-.+ ..|++|...|+|.+||...+.+++....+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 88899999999887662221 11 01245778888766 4799999999999999999999999887744 5999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++..+++.++++++.|+.|.-+...+...-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988876654221
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCC
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
|-.. .+...|...|++++..++ .+++++.|..+.+-.....+. .+-
T Consensus 281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~h-- 326 (691)
T KOG2048|consen 281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MDH-- 326 (691)
T ss_pred -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hhh--
Confidence 1100 011237778888888877 688888888877643222100 000
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE---------EEEEcCCCCCeEEEEEcCCCCCE
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNV 852 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~ 852 (1086)
.+.. ....-..+...|..++++......+.+|.+.+... .+........|.|.+.|| +|++
T Consensus 327 ---~~~~------~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 327 ---RQKN------LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred ---hccc------cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 0000 00011134556667777777788888998876521 222233556799999999 9999
Q ss_pred EEEEeCCCeEEEEEcCCceeEE-----EeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeeccCCC
Q 001396 853 IAIGMDDSTILIYNARSSEVIS-----KLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 926 (1086)
Q Consensus 853 lasg~~dg~v~iwd~~~~~~~~-----~l~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 926 (1086)
||.+. -..++||.+...-.+. ......-....+.|+-|+..++.++ .+..+.+.++++...+....++.. ..
T Consensus 397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~ 474 (691)
T KOG2048|consen 397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK 474 (691)
T ss_pred EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence 99876 4468888887532221 1222334577889999998888888 778888888887654443333332 11
Q ss_pred ccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC-CCCEEEEEECCCcEEEEEcCCC
Q 001396 927 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 927 ~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
. +.|..++.||||.+||+ +..+.|.+|++++++.-.. ...-...|+.+.|+| +-..|+.+..|+.|.-+|++..
T Consensus 475 ~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l-~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 475 C---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLL-KVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred C---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecc-hhccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 1 47999999999999999 7899999999998875443 212357899999995 5567888889999999999554
Q ss_pred ceeeeecccc--ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1005 EVQCRILSTA--YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1005 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++ .++.... .+|.......-....+.|+|.+ ...+...+.+-+++.|..
T Consensus 551 ~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 551 NL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred hh-hhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence 42 2222111 1111111111223567788854 444445666777777764
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=266.25 Aligned_cols=292 Identities=22% Similarity=0.340 Sum_probs=241.4
Q ss_pred eeeeeccCCCCceEeeecCC-CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spd-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.++.+.+|++.|+.++|+|- |. +||+++.|+.|+||+...+.-.. ....+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~---------------ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWT---------------CKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEE---------------EEEeccccchheeeeeee
Confidence 46788999999999999998 86 89999999999999988543221 122234689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEe
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~---~~~~~~ 475 (1086)
+|.|++||+++.|.++.||.-..++ +.....+.||...|.+++|+++|. +|++++.|++|-||.+..+ .++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999977654 556668999999999999999999 9999999999999998754 467889
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC---CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
+.|...|..+.|+|..+ +|+++|.|.+|++|+-.. -.+..++..+...|.+++|++.|..|++++. ++.+.
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999998775 999999999999997663 2357788999999999999999999999986 77899
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe------eEEEEcCCCCCCCCceEEEec
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||-..+. +.+ .|...++.+.|. ...|++++.|+.|++|.-...- ++... .+.+...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9985421 222 124789999998 4589999999999999766421 11111 122344799999999
Q ss_pred C-CCEEEEEECCCcEEEEECC
Q 001396 627 N-GTLLAVIANENRIKILETP 646 (1086)
Q Consensus 627 ~-~~~l~~~~~dg~i~iw~~~ 646 (1086)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-32 Score=295.29 Aligned_cols=506 Identities=16% Similarity=0.195 Sum_probs=360.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+...+..|..++|+|...+++++-..|.|++||.+-+.++. .|.+|.++|..++|+|++. ++||||+|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567889999999999999999999999999999988777 6889999999999999999 999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
..+.+++.++.||.+.|..+.|++ .-.+++++|.|.+|+||++.+.+++..+.+|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 999999999999999999999976 4469999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEE---EEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
|.+|++||+..-+....-.+ ++.=...+..+ +-|+.|- -....+.+| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence 77899999865332211111 11000111111 1122222 223344544 4569999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCC--eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 623 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
+|+|.-.++++|++|..|++|.+...+ .+.+.++|.+.|.++-|+ |...++++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999998664 457789999999999997 56788999999
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 780 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1086)
|+++++||+......++... ...+...++..|..+.++++... -+.||.+..
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDs-Gm~VFkleR--------------------- 322 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDS-GMIVFKLER--------------------- 322 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCC-ceEEEEEcc---------------------
Confidence 99999999986665554432 56788999999999965555544 455555432
Q ss_pred CCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE--EEEEcCC---CCCeEEEEEcCCCCCEEEE
Q 001396 781 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI 855 (1086)
Q Consensus 781 ~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las 855 (1086)
+.+ +.+++ +..|....+..|+-+|+.+.+. +..++.. ..+..++.++|..+..+++
T Consensus 323 ---------------Erp--a~~v~--~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 323 ---------------ERP--AYAVN--GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred ---------------cCc--eEEEc--CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 122 23333 3445555688999999987543 3344433 3678999999955555554
Q ss_pred EeCC-CeEEEEEcCCceeEEEec---c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 856 GMDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 856 g~~d-g~v~iwd~~~~~~~~~l~---~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
...| |.-.++.+...... ... . .......+-.+ -.++.+---.+..+.+-++.....+ .++.+.
T Consensus 384 s~~~n~~y~L~~ipk~~~~-~~~~~~~~k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------ 452 (1202)
T KOG0292|consen 384 SNLDNGEYELVQIPKDSDG-VSDGKDVKKGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------ 452 (1202)
T ss_pred eccCCCeEEEEEecCcccc-cCCchhhhcCCCCceEEEE-ecceEEEEecCcceEEecccchhhh---cccCcc------
Confidence 4433 45556655432110 000 0 11122333333 2233333333555666666653311 122221
Q ss_pred CCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001396 931 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 931 ~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
.+..+-+..+|.+|+. ....|.+||+.....+.++. -..|..++||.|..+++--+. .+|.|.+.. .++++++
T Consensus 453 -~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk-L~l~~si 525 (1202)
T KOG0292|consen 453 -STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK-LELLCSI 525 (1202)
T ss_pred -cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc-hhheecc
Confidence 2445666666665554 55679999999888777654 468999999999998886654 477777754 4444443
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.2e-34 Score=271.90 Aligned_cols=289 Identities=19% Similarity=0.256 Sum_probs=252.9
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
.+.+|+++|..+.|+|+|. ++|+|+.|..|.+|++....... ..+++|.++|..+.|.+|+
T Consensus 42 ~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred hcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCC
Confidence 4689999999999999998 69999999999999976543321 1277999999999999999
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
..|++++.|.+|+.||+++|++++ .+++|..-|+++.-+.-|.. ++.|++.|+++++||+++..+++++. ..-.+
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql 177 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL 177 (338)
T ss_pred CEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeE
Confidence 999999999999999999999877 57899999999996666665 78899999999999999999988885 55678
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC----
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---- 558 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---- 558 (1086)
++++|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+- +..+++||.+.
T Consensus 178 tAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 178 TAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPS 251 (338)
T ss_pred EEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCC
Confidence 889884 45668999999999999999999999999999999999999999999999876 78899999874
Q ss_pred CeeeeEEecccccC--CceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 559 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.+++..++++. |. .....++|+|++..+-+|+.|..+++||......+..+++|.+ .|+++.|+|...+|.+++.
T Consensus 252 ~R~v~if~g~~-hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 252 QRCVKIFQGHI-HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CceEEEeecch-hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 34577888765 22 3355788999999999999999999999999999999987754 5999999999999999999
Q ss_pred CCcEEEEE
Q 001396 637 ENRIKILE 644 (1086)
Q Consensus 637 dg~i~iw~ 644 (1086)
|.+|.+=+
T Consensus 329 dk~i~lge 336 (338)
T KOG0265|consen 329 DKTIYLGE 336 (338)
T ss_pred CceeEeec
Confidence 99988743
No 41
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-34 Score=287.09 Aligned_cols=279 Identities=20% Similarity=0.309 Sum_probs=252.8
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|++++|+.+|. +||+|+.||.++||+... .++.+ +..|.++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-~l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-NLIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCc-hhhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4899999999998 799999999999999754 44433 77899999999999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
+.|+++.+||..+|.... .+.-|..+-.+|.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.|+
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987655 4667888878899987765 8999999999999999999999999999999999995
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC---------CEEEEEeeCCCCceeEEEEeCCCC
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
+ .+.+|++++.|+++++|..........+..|...|..+.|+|+| ..+++++. +.+|++||+..+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 4 66899999999999999999999999999999999999999965 35777765 788999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
.++.+|..|+ .+|++++|+|+|+++++|+.||.|.+|+.++++..+.....+. |..++|+.+|..+..+..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCCC
Confidence 9999999998 9999999999999999999999999999999999999976544 899999999999999999999
Q ss_pred EEEEECC
Q 001396 640 IKILETP 646 (1086)
Q Consensus 640 i~iw~~~ 646 (1086)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-34 Score=262.77 Aligned_cols=293 Identities=15% Similarity=0.201 Sum_probs=254.5
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
..+|....++|.+|.++|.++.|.-||+| ..+++.|.+|++|+...|.++++ +.+|...|
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EV 62 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEV 62 (307)
T ss_pred ccCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCcee
Confidence 34677788899999999999999999997 66777889999999999999987 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC--Cce
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSR 471 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~--~~~ 471 (1086)
..++.+.|...+++|+.|..+.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ -++
T Consensus 63 lD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 63 LDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred eeccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCc
Confidence 999999999999999999999999999999887 6889999999999999999 999999999999999875 467
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
++.+......|.++.+ .+..+++|+.||++|.||++.+..... .-+.+|++++|++|++..++++- ++.+
T Consensus 138 iQildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stl 207 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTL 207 (307)
T ss_pred cchhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----ccee
Confidence 8888888899999987 446899999999999999988766544 34568999999999999998886 7789
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
++.|-.+|+++..+++|......+ .++++.....+++|++||.|++||+.....+..+..+.. ..+..++++|.-..+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDF 285 (307)
T ss_pred eecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccce
Confidence 999999999999999998433333 445677778999999999999999999999999987654 347899999987777
Q ss_pred EEEECCCcEEEEE
Q 001396 632 AVIANENRIKILE 644 (1086)
Q Consensus 632 ~~~~~dg~i~iw~ 644 (1086)
+++... .+..|.
T Consensus 286 ~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 286 ITATGH-GDLFWY 297 (307)
T ss_pred eEecCC-ceecee
Confidence 776653 455554
No 43
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=270.47 Aligned_cols=523 Identities=14% Similarity=0.205 Sum_probs=377.4
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--------cEEEEeC
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 466 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--------~i~iwd~ 466 (1086)
.+-+-|.|..+..... .+.+++++...+. -+.+|...|.|++.+||-- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA~--V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVAA--VGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEecc--EEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 4567788877665433 3566666553211 3669999999999999865 566554333 5999998
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEE--EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCC-EEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~ 543 (1086)
.+-..++.+......|++++|++...|.++... +.+..+.+||+..+.........+..+....|+|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888888889999999988888777665 4556799999998888777777788899999999655 555554
Q ss_pred CCCCceeEEEEeCCCCeeeeE---EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 544 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
.+.++.|+.+.+...++ +..+. +..|.+++|.++|. +++|..+|.|.||+..+.+..+....|. ..|.
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~ 291 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVF 291 (626)
T ss_pred ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceE
Confidence 77899999998876554 44444 46799999999874 7899999999999998888777766553 4689
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
+++.-.+|.+|- |+.|..|..|| ..-+.++..+
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~e--------------------------------------------- 324 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETE--------------------------------------------- 324 (626)
T ss_pred EEEEecCccEee-cCccceEEecc-cccccccccc---------------------------------------------
Confidence 999999997665 99999999999 2222221111
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 780 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1086)
+|+ ..+.|+.++-... -++.++..+.|..=.+ .
T Consensus 325 ---------------------lPe--~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~----------------------~ 357 (626)
T KOG2106|consen 325 ---------------------LPE--QFGPIRTVAEGKG--DILVGTTRNFILQGTL----------------------E 357 (626)
T ss_pred ---------------------Cch--hcCCeeEEecCCC--cEEEeeccceEEEeee----------------------c
Confidence 111 2223333322211 1555554444332111 1
Q ss_pred CCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 781 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 781 ~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
.+..+.. .+|......++..|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .| .+|.|+..
T Consensus 358 ~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~ 427 (626)
T KOG2106|consen 358 NGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT 427 (626)
T ss_pred CCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence 1111111 14777888999999998888887 89999999 444444433 457889999999 77 99999999
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEe
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.++.+...-. .+....+ .+|+.+.||
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWS 500 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeec
Confidence 9999999999666554444 88999999999999999999999999999987553322 2222333 279999999
Q ss_pred cCCCEEEE-EeCCeEEEEEcCCccceec-----------------cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 940 KDQTRFLL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 940 ~dg~~l~~-~~d~~i~vwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
+|+++|.+ +.|-.|..|....-..+.. ....|...|..++-|.+.+++|+|...|+|++|..
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 99999999 7888899994432221111 11235667777888889999999999999999999
Q ss_pred CCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1002 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
+--+..+.+- +...|+..+ .+++|.-.| ..|++.+.|.+|..|++
T Consensus 581 Pc~s~rA~~h-----e~~ghs~~v--t~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPSH-----EYGGHSSHV--TNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccce-----eecccccee--EEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 8766654433 222233434 477787644 56666669999999986
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=269.94 Aligned_cols=287 Identities=18% Similarity=0.300 Sum_probs=250.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+.||++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .++++|.|.+|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 488999999999999999999999999999999976543 34446889999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|+++|++++.+++|...|+++... ..+..++.+++.||++++||++..+...++.. .-+++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence 999999999999999999999843 33456788899999999999998777666532 347899999999999999987
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCCCCC--
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE-- 618 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~-- 618 (1086)
++.|.+||++.+.....+.||. +.|..+..+++|.++++-+.|.++++||++.. .++..+.++.+.-+
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 5669999999999999999999 99999999999999999999999999999853 34666665543322
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceec
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 698 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 698 (1086)
...++|+|++..+..|+.|..+++||......+..+.+|...|+++.|.| ....+.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence 35689999999999999999999999999999999999999999999985 45567777
Q ss_pred cccCccce
Q 001396 699 EAENKSEV 706 (1086)
Q Consensus 699 ~~d~~i~v 706 (1086)
++|.+|.+
T Consensus 327 ~sdk~i~l 334 (338)
T KOG0265|consen 327 SSDKTIYL 334 (338)
T ss_pred ccCceeEe
Confidence 77777655
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-34 Score=278.37 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=264.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||.+.|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999999755 6889999999999999999 899999999999999
Q ss_pred CCC-CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 466 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 466 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.++ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999997764 69999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC---------------CCEEEEEECCCcEEEEEcCCCeeEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 609 (1086)
+.++++|-..++++...++.|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 7789999999999999999998 89999999773 25888999999999999999999999
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCC
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 689 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s 689 (1086)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 997754 69999999999999999999999999999999999999999999999986
Q ss_pred CCcccceeccccCccceee
Q 001396 690 EDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 690 ~d~~~l~s~~~d~~i~vw~ 708 (1086)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3344899999999999996
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.6e-33 Score=314.82 Aligned_cols=294 Identities=21% Similarity=0.352 Sum_probs=257.5
Q ss_pred eeeeccC-CCCceEeeecCCCceEEEEEeccCcEEEEecCCCc--eeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 321 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 321 ~~~l~~h-~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+.+.+| ...|.|+.|||||++ +++++.|+.+++|+..+++ .+.. +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666665 789999999999996 9999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEe-cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCC--ceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
+|.+.|++++| ++++.+|++++.|+.|++||+.++. +...+..+.. .++++.|+|+++++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 5577899999999999999999988 4455554444 5999999999999999986 77899
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||+.++..+..+..+. ...+..++++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998322245566668899999999999999999999999999988775 45688999999999999
Q ss_pred EEE--CCCcEEEEECC
Q 001396 633 VIA--NENRIKILETP 646 (1086)
Q Consensus 633 ~~~--~dg~i~iw~~~ 646 (1086)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-34 Score=281.22 Aligned_cols=293 Identities=16% Similarity=0.180 Sum_probs=253.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
++..|.+.|.-+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3788999999999999999999999999999999988777777778999999999999999999 89999999999999
Q ss_pred eCCCCceeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 465 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 465 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
|+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+++..||++......--......|.+++.++||+++++.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 999999987774 3467899999955 7789999999999999998765432222223346899999999999999886
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
+..|++++..+.........+ .+|++.+.+.+++++++--.+..+++||++....+..+.++.....+..-+
T Consensus 375 ----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 375 ----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 667999998877665555543 589999999999999999999999999999888888888776555556666
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 624 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 624 ~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
|.- +..++++|+.|+.|+||+..+++++..+.||...|++++++| .+..++++++.||
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDg 505 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDG 505 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCC
Confidence 665 558999999999999999999999999999999999999996 4667899999999
Q ss_pred ccceeeee
Q 001396 703 KSEVEKPL 710 (1086)
Q Consensus 703 ~i~vw~~~ 710 (1086)
+||+|-..
T Consensus 506 tIRIWg~~ 513 (519)
T KOG0293|consen 506 TIRIWGPS 513 (519)
T ss_pred eEEEecCC
Confidence 99999754
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=285.20 Aligned_cols=285 Identities=21% Similarity=0.324 Sum_probs=249.8
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.-+..|..|.|.|+|++ |++|+..|.+.+|+..+ ++|+ .++..|..+|.++.||++|.++
T Consensus 94 Kvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wm 153 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWM 153 (464)
T ss_pred ccccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEE
Confidence 44458999999999998 88999999999999733 1111 2377899999999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
++|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|+.. .++++++||+|+|||....+....+.+|.-.|.+
T Consensus 154 iSgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred EEcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 999999999999987643 22 2444 458999999999888 7999999999999999999988999999999999
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 564 (1086)
+.|+|.. .+++++|.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+.+
T Consensus 228 vdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 228 VDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFT 301 (464)
T ss_pred eccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHH
Confidence 9999865 48999999999999999999999999999999999999999999999987 77899999999999999
Q ss_pred EecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
+++|. ..+.++.|+|-.. .+.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|.+|++|+.|.++++|
T Consensus 302 ~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 302 YRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred hhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeee
Confidence 99998 9999999999765 455689999999999986666666543 334579999999999999999999999999
Q ss_pred ECC
Q 001396 644 ETP 646 (1086)
Q Consensus 644 ~~~ 646 (1086)
...
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 755
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.6e-33 Score=269.43 Aligned_cols=294 Identities=14% Similarity=0.231 Sum_probs=258.3
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
++.+|.+.|.|+++-|-.+++++|+.|++|+|||+.+|+... ++.||...|..+++|+--. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 378999999999999999999999999999999999997544 7889999999999999887 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|++..+.++.+.||-..|.+++.+|.-| .|++|+.|.++|+||+++...+..+.+|..+|.++.+.|-.-.+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 9999999999999999999999988654 8999999999999999999999999999999999999998889999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|..|++||+..|+...++..|. ..+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 7789999999999999988887 899999999998888888876 589999999999998876644 4888888
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
+.|| ++++|+++|.+.+||.+++..++.......+ |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence 8877 7889999999999999988655544211000 00
Q ss_pred ceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 705 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 705 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
......|.+.+|...|.+|+++..|.+|++|.-+
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134568888999999999999999999999744
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=290.85 Aligned_cols=295 Identities=16% Similarity=0.255 Sum_probs=254.0
Q ss_pred CccceeeeeccCCCCceEeeecC-CCceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
+|...++++.||+..|+++.|.| .+. ||++|+.|+.|+||++.. ++++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 58899999999999999999999 664 899999999999999987 777765 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
..++|+++|..+.+++.|+.|++||+++|+++.. + .-...++|+.|.||+.. .+++|+.|+.|+.||+++|+.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f-~~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---F-HLDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEE---E-ecCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 9999999999999999999999999999987653 2 12346899999999965 78889999999999999999999
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
.+..|-+.|..+.|. ++|.++++.+.|+.+++|+.+....+. ..........++..+|++.++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 999999999999995 477899999999999999998776654 33444557788999999999998765 77898
Q ss_pred EEeCCCC---eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CC
Q 001396 553 EWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NG 628 (1086)
Q Consensus 553 iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 628 (1086)
++.+... ...+.|.+|... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+. ..+..+.|+| ..
T Consensus 411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP 487 (503)
T ss_pred EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence 8886532 344567777622 445678999999999999999999999999999999998874 4588999999 45
Q ss_pred CEEEEEECCCcEEEEE
Q 001396 629 TLLAVIANENRIKILE 644 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~ 644 (1086)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 6899999999999996
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.2e-29 Score=262.12 Aligned_cols=551 Identities=16% Similarity=0.163 Sum_probs=379.7
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCC-CccEEEEEECCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDG 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg 402 (1086)
+.-...+|.++|||.+.+. ||.+-.+|.|.||++..+=... ..+.|+ ...|.+++|+ +|
T Consensus 21 ~d~~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~ 80 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EG 80 (691)
T ss_pred EeeeccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cC
Confidence 3344569999999999985 8999999999999998754332 224444 5789999999 55
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE--EeecCCc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGA 480 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~ 480 (1086)
..|.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..++...++... .|....+
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred CeEEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 677788899999999999987655 5667788999999999998 78899999988888888777653 4444568
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-----C---CCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
.|.++.|+ +++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .|++|- ..|.|.
T Consensus 156 RvLslsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~ 228 (691)
T KOG2048|consen 156 RVLSLSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVT 228 (691)
T ss_pred eEEEEEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEE
Confidence 89999984 467789999999999999999988766221 1 22246788887555 455553 378899
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee--EEEEcCCCCCCCCceEEEecCCCE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
.||...+.+++.+..|. ..|.+++..+++.++++++.|+.|.-+...++.. +.......+...+.+++..++ .
T Consensus 229 FWd~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~ 303 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--A 303 (691)
T ss_pred EEcccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--e
Confidence 99999999999998888 9999999999999999999999999988876643 222222233446899999877 8
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
+++|+.|.++.+-........ .|... ...|....... ...+++..--.+..+.+|.+.
T Consensus 304 l~sgG~d~~l~i~~s~~~~~~----~h~~~----~~~p~~~~v~~--------------a~~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSREFKNM----DHRQK----NLFPASDRVSV--------------APENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred EEecceeeEEEEccccccCch----hhhcc----ccccccceeec--------------CccceEEEEeccccccceecc
Confidence 999999999888655432111 11100 00111111100 112223333344566667655
Q ss_pred ecCCc------cccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCc
Q 001396 711 FARPS------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 784 (1086)
Q Consensus 711 ~~~~~------~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 784 (1086)
..... ....+. ......|.+.+.||+|+.++.+.-. ..++|.++.... +++-....
T Consensus 362 S~~~~g~~~~~~Llkl~---~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~-----------vk~~~v~~--- 423 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLF---TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN-----------VKVINVDD--- 423 (691)
T ss_pred CcccccccChhhheeee---cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc-----------eeEEEecc---
Confidence 43211 111111 1245678999999999977776654 567777654321 11111110
Q ss_pred eeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceE--EEEEc--CCCCCeEEEEEcCCCCCEEEEEeC
Q 001396 785 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT--ILTIM--PPSPTATSLAFNPHDNNVIAIGMD 858 (1086)
Q Consensus 785 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~--~~~~~--~~~~~i~~l~~s~~d~~~lasg~~ 858 (1086)
.+ ........+.|+-|+..++..+ ...+.+++..+... +..+. .....|..++.|| +|++||+.+.
T Consensus 424 -----~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t 495 (691)
T KOG2048|consen 424 -----VP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIST 495 (691)
T ss_pred -----ch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEec
Confidence 00 1334567888998988887776 47788888775443 33332 2446899999999 9999999999
Q ss_pred CCeEEEEEcCCceeEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeec---cCCCccCCCCce
Q 001396 859 DSTILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---PDGVMTLAPSET 934 (1086)
Q Consensus 859 dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~v~ 934 (1086)
+|.|.+|++++++.......-...|+.++|+| +...|+.+..++++.-+|++............ +.........+.
T Consensus 496 ~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~ 575 (691)
T KOG2048|consen 496 RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIP 575 (691)
T ss_pred cceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCc
Confidence 99999999998876554434557899999995 66789999999999999995433222111111 111111224688
Q ss_pred EEEEecCCCEEEEE-eCCeEEEEEcC
Q 001396 935 HIQFHKDQTRFLLV-HETHLAIYEAE 959 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-~d~~i~vwd~~ 959 (1086)
.+.|+|.....+.. ..+-+.+.|..
T Consensus 576 gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 576 GISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred eEEeCCCCccEEEEEcCcEEEEEecC
Confidence 89998877766654 34456666654
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=248.41 Aligned_cols=293 Identities=16% Similarity=0.235 Sum_probs=237.8
Q ss_pred cccccceEEEEEecC-CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE
Q 001396 725 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 803 (1086)
Q Consensus 725 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~ 803 (1086)
.+|.+++..++++|- |..|++++.|..|++|+..... -|. .......+|...|+.+|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~--------ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT--------CKTVLDDGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE--------EEEeccccchheeeeee
Confidence 347889999999999 8889999999999999865310 011 11111125999999999
Q ss_pred eecCCCEEEEEe-CCeEEEEEcc--CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEec
Q 001396 804 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 877 (1086)
Q Consensus 804 ~s~dg~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 877 (1086)
++|.|++||+++ |.++.||.-. ..+++..+.+|.++|.|++|++ +|.+||+++.|+.|-||.+..+ ++...+.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 9999999866 4578899999999999999999 9999999999999999999854 5788999
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEE
Q 001396 878 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 956 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vw 956 (1086)
+|+..|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence 99999999999999999999999999999988732 13667888888876 7999999999999988 688999999
Q ss_pred EcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 957 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 957 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
...+ .+..-|...+..+.|. ...|++++.|+.|+++.-...-.-..+..... ....|+. -+.++.|.|..
T Consensus 223 ~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~--dVNsV~w~p~~ 292 (312)
T KOG0645|consen 223 RLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEV--DVNSVQWNPKV 292 (312)
T ss_pred eecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhccccc--ccceEEEcCCC
Confidence 9652 2344578899999998 45899999999999998775433223321111 2222333 44589999955
Q ss_pred CCEEEEEeCCCcEEEEccC
Q 001396 1037 PTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1037 ~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.+.|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7999999999999999874
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-32 Score=295.39 Aligned_cols=247 Identities=18% Similarity=0.329 Sum_probs=227.8
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------c--------------------ccceEeccccccEeE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------A--------------------RQQLEIDAHVGNVND 440 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~--------------------~~~~~~~~h~~~v~~ 440 (1086)
-...++|..||+|++.||.|..|..|++|.+...+. + ....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 346799999999999999999999999999984221 0 112347799999999
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
+.|+|+.+ +|+++|.|+++|+|.+.+..++-.++||..||+.+.|+ |.|.+++|+|.|++-++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999996 468999999999999999999999999999
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
+|...+.|+.|+|+..++++|+. |.++++||..+|..++.|.||. ++|.+++|+|+|++|++|++||.|.+||
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEE
Confidence 99999999999999999999976 8889999999999999999988 9999999999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 601 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.+++++..+..| ...|.++.|+.+|..||+++.|.+|++||+...
T Consensus 606 l~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999888 456999999999999999999999999998754
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-33 Score=270.30 Aligned_cols=277 Identities=21% Similarity=0.308 Sum_probs=236.0
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
..+.|.|+.+..+ .+++|..|.+|+|||.++-.+++. +.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence 4568999999653 389999999999999999888765 8999999999999 567999
Q ss_pred EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---eEEeecCCcceE
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 483 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 483 (1086)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. ++++++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 57799999999999853 899999999999999987653 356789999999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
.+.| +.+++++++.|.+|++|++.+.+.+.++.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4469999999999999999999999999999999977765 6788888876 7889999999999999
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE-------cCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.++||. .-|.++.|. .+.+++|+.||+|++||+..+...... ..-.+...|..+.|. ...+++.+.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccC
Confidence 999999 899999996 578999999999999999876533211 111223356667664 567899999
Q ss_pred CCcEEEEECCCCCee
Q 001396 637 ENRIKILETPESNSV 651 (1086)
Q Consensus 637 dg~i~iw~~~~~~~~ 651 (1086)
|.+|.|||..++.+-
T Consensus 468 ddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 468 DDTILIWDFLNGPPS 482 (499)
T ss_pred CCeEEEEEcCCCCcc
Confidence 999999999876443
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.6e-31 Score=285.30 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=255.1
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+++.+|.++|++++|+|+++ ++++|+.||.|.+||+.+++.... +.+|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 45789999999999999998 588999999999999998875543 5678899999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
+++|++++.+|.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875544 5678998999999999977 7888888999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
+.++++++. +.++++++.|+.|++||++..+....+..+...+.+++|+|+++.+++++. ++.|++||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999664 568888888999999999988888888888889999999999999998875 66799999999988
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
+..+..+. ..+.++.|+|++.++++++.+|.|++|++.+++....+..+ ...+.+++|+|+++++++++.|+.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887766 79999999999888888888999999999999888888754 34689999999999999999999999
Q ss_pred EEE
Q 001396 642 ILE 644 (1086)
Q Consensus 642 iw~ 644 (1086)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=270.43 Aligned_cols=282 Identities=16% Similarity=0.214 Sum_probs=246.7
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
...|..+.|.|+|+.|++|+..|.+.+|+..+-. -...+..|..+|.++.|+++|. +++||+.+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 4689999999999999999999999999975422 1123568999999999999999 8999999999999996544
Q ss_pred ceeEEeecC-CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 470 SRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 470 ~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
. ++.+.+| ...|++++|+| +...+++++.||+|+|||....++...+.+|+-.|.++.|+|.-..+++++. |
T Consensus 171 n-Vk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----D 243 (464)
T KOG0284|consen 171 N-VKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----D 243 (464)
T ss_pred h-hHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----C
Confidence 4 4445454 49999999977 4468999999999999999999988888999999999999999999999986 5
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-C
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-N 627 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 627 (1086)
..|.+||.++|.++.++.+|. ..|..+.|++++++|+++|.|..++++|+++.+.+.++..|. ..+.+++|+| .
T Consensus 244 nlVKlWDprSg~cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~~ 318 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPLN 318 (464)
T ss_pred ceeEeecCCCcchhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch--hhheeecccccc
Confidence 689999999999999999988 999999999999999999999999999999888888888664 4699999999 6
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeeec-cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 628 GTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 628 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
..+|.+|+.||.|..|.+....++..+ .+|...|++++++ |-|..|++|+.|.++++
T Consensus 319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h----------------------PlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH----------------------PLGHILATGSNDRTVRF 376 (464)
T ss_pred ccceeeccCCCceEEEeccccccccCCCcccccceeeeecc----------------------ccceeEeecCCCcceee
Confidence 778999999999999999955555444 5789999999998 55778899999999999
Q ss_pred eeee
Q 001396 707 EKPL 710 (1086)
Q Consensus 707 w~~~ 710 (1086)
|...
T Consensus 377 w~r~ 380 (464)
T KOG0284|consen 377 WTRN 380 (464)
T ss_pred eccC
Confidence 9754
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=295.42 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=254.9
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC-
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 466 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~- 466 (1086)
.|...|.++.||+||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3478999999999999999999999999999977662 22235679999999999999999 8999999999999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
..+..++++++|...|++++|++ +++++++|+.|++|++||++++++...+..|...|++++|++++++|++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999966 5589999999999999999999999999999999999999999999999965
Q ss_pred CceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCC-CCCceEE
Q 001396 547 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 623 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 623 (1086)
++.|++||+.++. +...+.++.... .+++++|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7889999999999 567888877333 7999999999999999999999999999999999888877553 2344555
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCCeeeecccc-ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc--c
Q 001396 624 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 700 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~ 700 (1086)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++ +...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 6789999999999999999999999999999999 7777777775 5566677776 6
Q ss_pred cCccceeeee
Q 001396 701 ENKSEVEKPL 710 (1086)
Q Consensus 701 d~~i~vw~~~ 710 (1086)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8889999753
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=3.8e-32 Score=276.43 Aligned_cols=290 Identities=15% Similarity=0.189 Sum_probs=254.4
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecC-CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 385 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
.+.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4889999999999999 899999999999999999987 66666 7889999999999999999 799999999999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+||++||+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 56678899998875 57999999999999999999999999999999999999999999999998
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe---eEEEEcCCCCCCCC
Q 001396 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 619 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 619 (1086)
. +..+++|+.+.+..+....... -....++..+|+++++++-+.|+.|.++.+...- ....+.+|.-...-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 6689999999887766655443 2567789999999999999999999999876432 22344445433445
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|.. ...+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e---------------------~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE---------------------PSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC---------------------cceeEecc
Confidence 679999999999999999999999999999999999999999999999753 45689999
Q ss_pred ccCccceee
Q 001396 700 AENKSEVEK 708 (1086)
Q Consensus 700 ~d~~i~vw~ 708 (1086)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9e-31 Score=240.94 Aligned_cols=269 Identities=20% Similarity=0.313 Sum_probs=239.6
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 384 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
.++.+|+++|.++.|+-||+|.++|+.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|..+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3478899999999999999999999999999999999998887 7889999999999999998 7999999999999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC--ceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
||+++|+.++.|.+|.+.|+.+.|+ ++...+++|+.|..+++||.++. ++++.+......|.++..+ +..+++|
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999994 46679999999999999998765 4566677677778777764 5667777
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. |++++.||++.|+....+-+ .+|++++|+++++..++++-|+++++.|-.+|+++....+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 76 78899999999988777766 5699999999999999999999999999999999999998877665667
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccc-eeeeEEccCC
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPIS 670 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~p~~ 670 (1086)
++++....++++|+.||.+.+||+.+...+..+..+... +..+++.|..
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 888888899999999999999999999999888888777 7888888653
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=6.4e-32 Score=261.93 Aligned_cols=275 Identities=16% Similarity=0.257 Sum_probs=234.9
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
...|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 467999988 67789999999999999999987776 678999999999995 45 8999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+++.++-+|...|..+.|+ ..++++++.|.++++||+.+... ...+.+|...|..+.|+. +++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC---
Confidence 9999999999999999984 24999999999999999987654 336678888999888854 59998875
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
|.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 -DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd- 409 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD- 409 (499)
T ss_pred -CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec-
Confidence 8889999999999999999998 78888776 478999999999999999999999999998754 58899996
Q ss_pred CCCEEEEEECCCcEEEEECCCCC---------eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 627 NGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+.+++|+.||+|++||+..+. ++..+..|.+.|..+.|. ...+++
T Consensus 410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIvs 464 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQIIS 464 (499)
T ss_pred -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEEe
Confidence 6789999999999999998663 334445666677666663 667899
Q ss_pred ccccCccceeeeeecCCcc
Q 001396 698 VEAENKSEVEKPLFARPSE 716 (1086)
Q Consensus 698 ~~~d~~i~vw~~~~~~~~~ 716 (1086)
++.|.+|.+||+....+..
T Consensus 465 ssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred ccCCCeEEEEEcCCCCccc
Confidence 9999999999987554443
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.3e-31 Score=245.10 Aligned_cols=290 Identities=17% Similarity=0.223 Sum_probs=255.4
Q ss_pred eeccCCCCceEeeecC---CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 323 TLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~sp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+-+||+.+|..++||| +| |+|++++.|+.=.+-+-++|.-+.+ +.||.+.|....+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~ 68 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLN 68 (334)
T ss_pred EEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecC
Confidence 3489999999999985 77 6899999999999988889988876 88999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 478 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h 478 (1086)
.+..+.|+++.|-+.+|||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 9999999999999999999999987763 2 6888999999999999 89999999999999998764 56889999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
.+.|..+.|... .+.+++.+.|++||+||.+++..+..+... .+|+++.++++|++|..+. .+.|..||..+
T Consensus 143 tg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks 214 (334)
T KOG0278|consen 143 TGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS 214 (334)
T ss_pred CCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence 999999999653 358888899999999999999998877644 4799999999999998875 34599999999
Q ss_pred CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
...++.+.... .|.+..++|+...+++|++|..++.||..++..+.... .++..+|.|+.|+|+|...++|+.||
T Consensus 215 f~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 215 FGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCCc
Confidence 99998888754 89999999999999999999999999999999988862 23345799999999999999999999
Q ss_pred cEEEEECCCCCee
Q 001396 639 RIKILETPESNSV 651 (1086)
Q Consensus 639 ~i~iw~~~~~~~~ 651 (1086)
+|++|....++..
T Consensus 290 TirlWQt~~~~~~ 302 (334)
T KOG0278|consen 290 TIRLWQTTPGKTY 302 (334)
T ss_pred eEEEEEecCCCch
Confidence 9999998766443
No 62
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=2.5e-29 Score=262.24 Aligned_cols=690 Identities=16% Similarity=0.134 Sum_probs=367.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+-.|.+|.+.|+.+.|||-...|||+||.|..|+||.+..|....- .-....+.+..-.|-|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 355678999999999999997667899999999999999986543210 0112235556678899999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~~~~~~~ 477 (1086)
+|...-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++.+.|+.|+|||.+ .++.+++..+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977767777788999999999987554 6889999999999999999 89999999999999987 4688888888
Q ss_pred CCcce-EEEeecccCCccEEEEEEcC----CeEEEEEcCCCce-eEEecC-CCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 478 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 478 h~~~v-~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~-~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
|.+.- ..+.| -.+-+.|++.+.+ ..|++||.+.... ..++.. ....|.---|.||.++|+.++. |+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---Ccce
Confidence 87642 12334 3344567766655 4689999876543 222222 2224555678999999988763 5778
Q ss_pred EEEEeCCCCeeeeE--EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE-EEe--
Q 001396 551 LVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN-- 625 (1086)
Q Consensus 551 i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s-- 625 (1086)
++.+.+...++... ++... .......++-|....-+..++ ..+++.+.....+.... + .+. ... .|+
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y-~--VPR-ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPY-I--VPR-KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeeccc-c--cch-hhhhhhhhh
Confidence 88888766543211 11100 011123333343222111111 12233332222111110 0 000 000 111
Q ss_pred --cCCCEEEEEECCCcEEEEECCCCCeeeec------ccccc----ceeee------EEccCCCceeccccCCeeee---
Q 001396 626 --KNGTLLAVIANENRIKILETPESNSVDAA------GVLSD----NLRKL------SVNPISTVTGAGIANGSVSV--- 684 (1086)
Q Consensus 626 --~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~----~v~~~------~~~p~~~~~~~~~~~~~~~~--- 684 (1086)
|+..-...+..-| -|=..+++.+..+ +.|.. .+... +|.+.....+ ..+.+.-
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppa---aP~~~~n~~~ 432 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPA---APRPMSNNNS 432 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCC---CCCccccccc
Confidence 1110000000000 0111111111100 00100 00000 0000000000 0000000
Q ss_pred cCCCCCCcccceeccccCccceeeeeecCCcccccc---c-cCCcccccceEEEEEecCCceEE------EeeccceeEE
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL---L-LPSKVKANKISRLTYNNGGQAIF------ALASNGVHLM 754 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~---~-~~~~~~~~~i~~l~~s~~g~~l~------~~~~dg~i~v 754 (1086)
.++.-||-+.--+......+|-.+....+....... . -...+...++..+ ++....+. ...+-.+..+
T Consensus 433 ~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~ 510 (1012)
T KOG1445|consen 433 SSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSV 510 (1012)
T ss_pred cccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccc
Confidence 000011100000000001111111000000000000 0 0000000000000 00000000 0000000000
Q ss_pred e------eccCCccccCcc-----------------cccccCCceecCCCCCceee----ecCCCCCCCCCeeEEEeecC
Q 001396 755 W------RWPRNDLTLSTE-----------------ATTKVPPRLYQPRHGPQFMV----NDTTDSNSQEAVPCFALSKN 807 (1086)
Q Consensus 755 w------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~v~~l~~s~d 807 (1086)
. ..+......-|. ...-+.+.-+.-..|..... ..+......-+-.+=-|..+
T Consensus 511 ~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan 590 (1012)
T KOG1445|consen 511 VGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCAN 590 (1012)
T ss_pred cCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeec
Confidence 0 000000000000 00000011111111110000 00000001111122234556
Q ss_pred CCEEEEE---eCCeEEEEEccC-ceEEEE-Ec--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------eeE
Q 001396 808 DAYLFSA---SGGVISLYIVMT-FKTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVI 873 (1086)
Q Consensus 808 g~~l~~~---~dg~i~iwd~~~-~~~~~~-~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~ 873 (1086)
..++|+- +.|.|.||++.. |+.... +. .....|+.+.|.|.|...||++++||.|++|.+..+ ...
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe 670 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE 670 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence 6677654 368999999974 332211 11 134578999999999999999999999999999764 345
Q ss_pred EEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCC
Q 001396 874 SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 951 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~ 951 (1086)
..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.. ....+.+|.. .|..++|||||+.+|+ +.||
T Consensus 671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg 742 (1012)
T KOG1445|consen 671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDG 742 (1012)
T ss_pred eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCc
Confidence 678899999999999994 4789999999999999999854 2334556654 8999999999999999 8999
Q ss_pred eEEEEEcCCccceeccccC-CccCEEEEEEeCCCCEEEEEECCC----cEEEEEcCCCceeeeeccccccCCCCccCccc
Q 001396 952 HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1026 (1086)
Q Consensus 952 ~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1086)
+|+||+..+++....--.+ -..+-..+.|.-||+++++.|.|. .|.+||..+.....-....... .-.
T Consensus 743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-------aps 815 (1012)
T KOG1445|consen 743 TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-------APS 815 (1012)
T ss_pred eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-------cCc
Confidence 9999999887754321222 145556788999999999888774 5888887765432111100000 001
Q ss_pred ceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCCC
Q 001396 1027 PHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1062 (1086)
Q Consensus 1027 ~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 1062 (1086)
++.-.++++.+.+|++|-.|..|.+|++..+.+..-
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~l 851 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLL 851 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEecCCCceee
Confidence 122235665677889999999999999998887653
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.3e-29 Score=305.71 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=238.9
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 402 (1086)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456899999999999998 599999999999999864211000 0 000001122 346899999987 57
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
.+||+++.||+|+|||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999886554 6789999999999997 667 8999999999999999999999888754 67
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCc-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC-
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 559 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~- 559 (1086)
|.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 456777888899999997 7888988876 778999999743
Q ss_pred -----eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-----------CCCCCCCceEE
Q 001396 560 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 623 (1086)
Q Consensus 560 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 623 (1086)
..+..+.+|. ..+..++|+|++.+|++|+.|+.|++|+......+..... ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888877 8899999999999999999999999999876654433211 12234589999
Q ss_pred EecCCCEEEEEECCCcEEEEEC
Q 001396 624 FNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
|+|++..|++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-28 Score=268.20 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=254.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|..+|.+++|+|++++|++++.+|.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876443 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++.+..+..|...+.++.|++. +.++++++.+|.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999899999999999999999654 568888888999999999988888888888889999999999998888764
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.|++||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 6679999999999888888766 799999999999999999999999999999988888775443 368999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
|++.++++++.++.+++|+..++.....+..|...+.++.++ +++..+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888889888886 6788899999999999
Q ss_pred eee
Q 001396 706 VEK 708 (1086)
Q Consensus 706 vw~ 708 (1086)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.3e-29 Score=233.26 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=243.7
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 400 (1086)
+.+.+|.+.|..|+|+.+|.+ ||+|+.|+++.+|+++..+.+.... ..+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeCCC
Confidence 456899999999999999997 9999999999999999886554322 678999999999998
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
...++|+++.|.+|++||+..+++.... .. .+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.....+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 5678999999999999999999876632 22 23334589999999 89999999999999999888776654 445
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
.+..++|+. ++.+++.....|.|.|..+...+++..+..|...+.++.|+|+|+++++|+. |..+.+||++.--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788863 4457777788899999999999999999999999999999999999999987 7789999999999
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+++.+..+. .+|+.+.|+.+|++|++||+|..|-|=++++|..+..++..+. ...++|+|...+||.+++|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 9999999999999999999999999999999999999987654 6899999999999988776
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.3e-28 Score=221.41 Aligned_cols=310 Identities=17% Similarity=0.207 Sum_probs=241.6
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..++.+|.... .|.+++|+|.|. |.|+|+..++.+|-....-..++.. .+.....+......-+.|.+.|.|.+
T Consensus 23 f~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 23 FEAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred eEEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEE
Confidence 35677777654 999999999998 7999999999998765432211100 00000111111122567899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecC--CCccccceEeccccccEeEEEecCC---CCcEEEEEEe-CCCcEEEEeCCCCce
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 471 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~v~~s~d---~~~l~l~s~~-~d~~i~iwd~~~~~~ 471 (1086)
|||+|++||+|+.|.+|++.-.+. .+......++.-|.+.|..++|-.+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999976654 3334444568889999999999654 233 566654 578899999999999
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------CCceEEEEEecCCCEEEEEeeC
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.+.+.+|.+.|.++- +-++..+++|+.|.+||+||++-..++.++... ...|.++++.|.|++|+++..
T Consensus 176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 999999999998874 226679999999999999999988887765432 246899999999999999976
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCCCCCCc
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP 620 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 620 (1086)
+....+||++.++.++.|..|. ..|.++.|+|...++++++.|..|++-|++.. -.+.... .+...+.
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i 323 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAI 323 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceE
Confidence 6678999999999999999988 99999999999999999999999999998742 1222222 2334578
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.+.|+|..-.+++.+.|.++.+|.+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 89999998889999999999999764
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=256.42 Aligned_cols=285 Identities=19% Similarity=0.237 Sum_probs=243.1
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+.|. .|.+++|||...+=+|+.+. -.+.||+..+...++. +......|.++.|-.||++
T Consensus 24 ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 24 KEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred cccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeE
Confidence 4555 99999999966554555443 6899999888776653 3335578999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
||+|...|.|+|+|+.+...++ .+.+|+.+|..+.|+|+++. .+++|++|+.+++||+.+......+.+|++.|.+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999999999977644444 57899999999999999887 8999999999999999999887799999999999
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKR 563 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~ 563 (1086)
.+++|- +++.+++||.||+|++||.+.......--.|+.+|.++.+-|.|..+++++ ...+++||+.+|. .+.
T Consensus 159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLT 232 (487)
T ss_pred eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehh
Confidence 999865 557999999999999999999866555567888999999999999999987 3469999999554 444
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.+..|. ..|+|+++..++..|++++-|+.+++||+.+.+.+..+...++ |.+++.+|++..+++|..+|.+.+-
T Consensus 233 ~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~p---vLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 233 SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGP---VLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccc---eeeEEecCCCceEEEecccceeeee
Confidence 444466 8999999999999999999999999999999999999877644 8999999999999999999988876
Q ss_pred ECC
Q 001396 644 ETP 646 (1086)
Q Consensus 644 ~~~ 646 (1086)
+..
T Consensus 307 r~~ 309 (487)
T KOG0310|consen 307 RRE 309 (487)
T ss_pred hhh
Confidence 443
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.1e-30 Score=258.28 Aligned_cols=297 Identities=16% Similarity=0.233 Sum_probs=258.3
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
+.+|..+...+..|.++|..+.|-++... |++|+.|..|++|++..++.-.. ..|.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 56788999999999999999999999664 89999999999999987773221 1277888999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+.+.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999976555 6889999999999998877 59999999999999999999988
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
++- ....+..|+.. ...+++|-.|++||+||.++.........++ .|+++..+++|..+.+++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 34445555553 3478999999999999999999888887776 9999999999999999976 667999
Q ss_pred EeCCCCeeeeEEeccccc-CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 554 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
.|+++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 999999988888754311 2347889999999999999999999999999999999998776656799999999999999
Q ss_pred EEECCCcEEEE
Q 001396 633 VIANENRIKIL 643 (1086)
Q Consensus 633 ~~~~dg~i~iw 643 (1086)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5e-28 Score=296.35 Aligned_cols=322 Identities=15% Similarity=0.179 Sum_probs=248.7
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC----Ccc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 425 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 425 (1086)
+|.+++|+..+....... ...-+.+|.+.|.+++|+|+|++||+|+.|+.|+||++... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888888765443211 11114569999999999999999999999999999998642 111
Q ss_pred c-cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCe
Q 001396 426 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 504 (1086)
Q Consensus 426 ~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 504 (1086)
. ....+ .+...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11122 34567999999886433 7999999999999999999999999999999999999753 5679999999999
Q ss_pred EEEEEcCCCceeEEecCCCCceEEEEEe-cCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEec
Q 001396 505 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|++||+.++.....+..+ ..+.++.|+ ++|.++++++. ++.|++||++++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988877777644 578899995 57899999876 7789999998765 466677776 899999997
Q ss_pred CCCEEEEEECCCcEEEEEcCCC------eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 583 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 583 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
++.++++++.|++|++||+..+ ..+..+..|. ..+..++|+|++++|++|+.|+.|.+|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 4566676553 4578899999999999999999999999775533221110
Q ss_pred c-ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEE
Q 001396 657 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 735 (1086)
Q Consensus 657 ~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 735 (1086)
. ...+ .. .....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence 0 0000 00 00012456799999
Q ss_pred EecCCceEEEeeccceeEEeec
Q 001396 736 YNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 736 ~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=236.33 Aligned_cols=312 Identities=17% Similarity=0.213 Sum_probs=243.5
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceee-eeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
..|..|++++.+.+|||||. |+|+|+.|..|+|.|++..-... ...+..-+.....+... .+-.|.++|+++.|+|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceeecc
Confidence 34688999999999999998 79999999999999997321110 00000001111112222 3778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe---ec
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EG 477 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~---~~ 477 (1086)
....|++|+.|++|+++|+..-...+....+ ....+|.++.|+|.|. +|+.|....++++||+++-++-..- .+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999765433322222 3566899999999999 8999999999999999998875443 56
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC-C-CCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-P-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
|.+.|+++.++ +.+.+.++++.||.|++||--+.+++.++.. | +..|.+..|+.+|+++++.+. |..+++|.
T Consensus 260 ht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWE 333 (430)
T KOG0640|consen 260 HTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWE 333 (430)
T ss_pred cccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeee
Confidence 89999999984 5778999999999999999888888776643 3 347999999999999999876 77899999
Q ss_pred CCCCeeeeEEecccccCC--ceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 556 ESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+.+++++..+.|...... .-+...|+....+++.-. ..+.+.-||.+++.....+.. ++...+..+.-||.+.-++
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCcee
Confidence 999999999987631111 123445777778877754 457899999999887766654 3445789999999999999
Q ss_pred EEECCCcEEEEECC
Q 001396 633 VIANENRIKILETP 646 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~ 646 (1086)
+++.|..+++|-..
T Consensus 413 TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 413 TCSDDFRARFWYRR 426 (430)
T ss_pred eecccceeeeeeec
Confidence 99999999999644
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=235.15 Aligned_cols=287 Identities=14% Similarity=0.184 Sum_probs=255.5
Q ss_pred ecCCCccEEEEEECC---CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
..||..+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.+|.+.|++.....+.. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 679999999999995 89999999999988888888887666 7899999999999988877 789999999999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEE
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
|||.-+|..+++|. |...|.+++| +.|.++|++|+.++.+|+||++..+. ...+..|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 9999999999 55778999999999999999987664 55788999999999999999999987
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||.+++..++++... .+|.++.++++|++| +....+.|.+||..+..+++....+.. |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccc---ccc
Confidence 65 778999999999999998874 589999999998755 445567899999999999998887654 788
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeec-cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
...+|+...+++|+.|..++.||..++..+... ++|.++|.|+.|+ |+|..-++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999998885 8999999999996 78889999999
Q ss_pred cCccceeeeeecCC
Q 001396 701 ENKSEVEKPLFARP 714 (1086)
Q Consensus 701 d~~i~vw~~~~~~~ 714 (1086)
||+|++|.....++
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999999765443
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-28 Score=240.49 Aligned_cols=283 Identities=19% Similarity=0.365 Sum_probs=235.0
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC---
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--- 401 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--- 401 (1086)
.-|.+.|.++... ++ .|.+|++||.++|||.. |+..+. +.||.++|.+++|.-.
T Consensus 102 ~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSS 158 (423)
T ss_pred ccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCc
Confidence 3578899999999 45 48999999999999975 555544 7899999998888543
Q ss_pred CCEEEEEeCCCEEEEEEecCCCcc-ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-------------
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV------------- 467 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~------------- 467 (1086)
...+++++.|.++++|.++.++.. .......||...|.+++..++|. .+++|+.|.+|+||+.+
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchh
Confidence 346999999999999999887653 22223459999999999999999 89999999999999932
Q ss_pred ------------CCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC
Q 001396 468 ------------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 468 ------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 535 (1086)
++.++-++.||.++|.++.|.+ ...+++++.|.+|+.||+.+++....+.. +....++..+|..
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLS 312 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeeccccc
Confidence 1235677899999999999965 35899999999999999999888776654 3478999999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCe---eeeEEecccccCCceEEEEEecCCCE-EEEEECCCcEEEEEcCCCe-eEEEE
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTI 610 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~ 610 (1086)
++|++++. +..+++||.+++. ....+.+|. +.|.++.|+|...+ |++|+.|+++++||+++.+ ++..+
T Consensus 313 ~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 313 KLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred ceeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 99999987 7789999999764 456677877 89999999998654 5679999999999999877 88888
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
..|. ..|.++.|+. +..+++|+.|.+|+++...
T Consensus 386 ~~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 386 AGHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 8774 4588899875 6699999999999998654
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=241.46 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=250.8
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcccc-----ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~-----~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
|....+.|..|||||+||++|+.||.|.+||..+|+..+. ...+--+..+|.|+.||.|.. .+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 4567788999999999999999999999999999976432 123445788999999999999 899999999999
Q ss_pred EEeCCCCceeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 463 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 463 iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+|.+++|.|++.|. .|...|+++.| +.|+..+++++.|.++|+--+.+++....+.+|..-|+...|++||.+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEE--ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999996 89999999999 4577799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEEEEcCC-CCCCCC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN 619 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 619 (1086)
+. |+.|++|+..+.+++.+|+... .+.+|+++-.-|. ..+++++...++|+|.++. |+.+..+... ......
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 87 7889999999999999998654 3467888877765 4678888899999999984 6677776543 222346
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
.+++.+|.|.++++.+.|+.++.+...++..-..+..|...+-.++-+ |..+.+++-+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH----------------------PHqNllAsYs 498 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH----------------------PHQNLLASYS 498 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC----------------------cccchhhhhc
Confidence 788999999999999999999999999999999888888887777665 6678899999
Q ss_pred ccCccceee
Q 001396 700 AENKSEVEK 708 (1086)
Q Consensus 700 ~d~~i~vw~ 708 (1086)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999995
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.6e-28 Score=273.91 Aligned_cols=306 Identities=19% Similarity=0.249 Sum_probs=248.1
Q ss_pred CCCCceEeeecCCCceEEEEEe--ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+...|..++.+|||.. +|+|+ .||.++||+...=-.- ...++.. .+-....+..|.+.|.|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3456899999999985 99999 8999999997531100 0011111 11111236789999999999999999
Q ss_pred EEEEeCCCEEEEEEecC---C------------CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 405 LGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~---~------------~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
||+|++|+.|.||+... + +..+....+.+|...|.+++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 1 11234456889999999999999999 9999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC------CceEEEEEecCCCEEEEEee
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+.+..+.+|.+.|..+.| ++-|++|++-+.|++|++|+..+-+....+..+- ..+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999999 5577999999999999999977655555444332 25788999999999999877
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-----CC------------EEEEEECCCcEEEEEcCCCee
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
-+.+...+.|.+-.+.+.-..+.||. .++.++.|+|. .+ .+++|+.|++|.||.....++
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 66667889999988888889999999 89999999982 11 456799999999999988887
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.....-.. ..|..++|+|||..|++++.||+|.+...+..
T Consensus 317 l~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 317 LFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 766543222 35899999999999999999999999998854
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=225.04 Aligned_cols=286 Identities=13% Similarity=0.162 Sum_probs=241.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
++.||+.+++.+.++.+|.+|.+|+.|.++.||--..|+.+. ++.||++.|+|+...-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998888666 7899999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-----CCeEEEEEcC-------CCceeEEecCCCCceEEEEEe
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 532 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s 532 (1086)
|+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 677899999965 4455555543 4679999988 445577788888999999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
|-++.|++|.. ++.|.+||.++|. .+..-+.|. ..|+.+++++|..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999986 7779999999984 444455555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEE--------------EECCCCCeeeeccccccceeeeEEccCCCceeccc
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKI--------------LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i--------------w~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
... +|++.+++|...+++.|+.....-+ |++-..+.+...++|-++|++++++
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 653 4899999998778877755332222 2222224567788999999999996
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+|+..++|+.||.||+..++
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 789999999999999987654
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=224.51 Aligned_cols=286 Identities=10% Similarity=0.095 Sum_probs=239.1
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
|.||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|.|++...+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcc
Confidence 689999999999999998 799999999999999999999987 889999999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-----CCCcEEEEeCC-------CCce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGSR 471 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-----~d~~i~iwd~~-------~~~~ 471 (1086)
++++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++... ..+.|.++|++ ..++
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 999999999999999999987763 2 3456899999999999 344332 34678999987 4556
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
...+..+...++.+.|.+ -+++|++|..||.|..||++++.... .-..|...|+.+.+++|..++++++. |.+
T Consensus 140 ~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtt 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTT 213 (327)
T ss_pred eEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Ccc
Confidence 788888999999999965 45699999999999999999976655 55778889999999999999999987 667
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEE--EEcCCC------------eeEEEEcCCCCC
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGGL 616 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--wd~~~~------------~~~~~~~~~~~~ 616 (1086)
-.+||..+-+.++++.... +|++.+++|...+++.|+.....-| =+.+.| +.+..+.+ +.
T Consensus 214 akl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--HF 287 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--HF 287 (327)
T ss_pred ceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--cc
Confidence 8999999999999998754 9999999999888888664322222 122222 23344444 45
Q ss_pred CCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 617 PENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
.+|++++|+|+|+..++|+.||.|++...+.
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 6799999999999999999999999986654
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=225.16 Aligned_cols=287 Identities=16% Similarity=0.233 Sum_probs=237.1
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
+..-.+.|.++.|+++|.+ +++++.|.+++|||..+|+++++ ...+...|..+.|-....
T Consensus 10 f~~~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 3445568999999999995 77788899999999999999876 445667888899987777
Q ss_pred EEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 404 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 404 ~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
.++.++. |.+|+.-++.+.+.++ -+.||...|.+++.+|-+. .++|++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777766 7899999999998777 6899999999999999998 8999999999999999998888777655555
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecC---CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+. +| ++.|-++|++...+.|++||++... +-..+.. ...+.+.+.|||||++|+.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 53 45 6677788888888899999998752 3333333 3557899999999999999875 678999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
-+|..+.++.++.....--...+|+||++++++|+.||+|.+|+++++..+..+... ....+.++.|+|.-..++++
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa-- 293 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA-- 293 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--
Confidence 999999999988744444467889999999999999999999999999999999875 23568899999976666655
Q ss_pred CCcEEEEECC
Q 001396 637 ENRIKILETP 646 (1086)
Q Consensus 637 dg~i~iw~~~ 646 (1086)
+..+.+|-..
T Consensus 294 ~s~l~fw~p~ 303 (311)
T KOG1446|consen 294 SSNLVFWLPD 303 (311)
T ss_pred CceEEEEecc
Confidence 4578888654
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=266.56 Aligned_cols=310 Identities=16% Similarity=0.180 Sum_probs=225.8
Q ss_pred ceeeeec-cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 319 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 319 ~~~~~l~-~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...+.+. .|.+.||++.||+||+| ||+|+.|+.|+||.+...+.... ... +.+..... +.. .+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~-~~~--~~~~~~~~-----~~~-~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRV-AEG--DSSCMYFE-----YNA-NSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcc-ccc--ccchhhhh-----hhh-ccccCccc
Confidence 3445566 99999999999999995 99999999999999977443211 000 00000000 000 00011111
Q ss_pred ECC-----CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 398 WSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 398 ~sp-----dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
-++ .....-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|.+|++|++....|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 01111112222222221111111123444788999999999999876 7999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
+.|. |...|+|++|+|.. .+++++|+-||.||||++...+.......+ .-|++++|.|||++.+.|+. +|..+
T Consensus 404 ~~F~-HndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 99999999999985 479999999999999999876655554444 68999999999999999998 77899
Q ss_pred EEeCCCCeeeeEEecccc-----cCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 553 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
+|+...-+....+.-+.. ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 999988777665543321 12379999999754 358899999999999999999999888765555567789999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 001396 627 NGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998644
No 79
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.3e-26 Score=259.80 Aligned_cols=289 Identities=12% Similarity=0.129 Sum_probs=224.4
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCCE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL 404 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 404 (1086)
.|-..|.....++|+.. +++++.+..+..|+...|..+.. .............+.+|.+.|.+++|+| ++.+
T Consensus 18 ~~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred cceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 34457888888999764 67777778888898766643311 1011111111234789999999999999 8999
Q ss_pred EEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 405 LGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
||+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|..
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 99999999999999987532 1234468899999999999998644 799999999999999999999999999999
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc-eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.|.+++|++ ++.+|++++.|++|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++.
T Consensus 170 ~V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 170 QITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ceEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 999999965 6789999999999999999998888888777654 4567899999898887766556889999999875
Q ss_pred e-eeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 560 A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 560 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
. .+.....+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 248 ~~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 248 ASPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CCceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 4 333333222 24566678999999999887 59999999999998877655432 234678888884
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.1e-27 Score=264.47 Aligned_cols=284 Identities=17% Similarity=0.284 Sum_probs=249.2
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.|...+.|..|. ++ .+++|+.|.+|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 366789999999 55 389999999999999999987753 177999999999999888999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
++|+.|.+++|||+.+|++.. .+.+|...|.++...+. .+++|+.|.+|++|++.++.+++.+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999877 78899999999988653 78899999999999999999999999999999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeE
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 564 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 564 (1086)
..+ +.++++|+.|++|++||+.+++++..+.+|.+.|.++.+.+. ..+++|+. |..|++||+.++ +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 569999999999999999999999999999999999987766 88999887 678999999999 99999
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 644 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 644 (1086)
+.+|. .-+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.++.+++||
T Consensus 409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 6665544 45689999999999999999999999999874 22345666654 46899999999999999
Q ss_pred CCCCCeeeec
Q 001396 645 TPESNSVDAA 654 (1086)
Q Consensus 645 ~~~~~~~~~~ 654 (1086)
++++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9999777655
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.5e-28 Score=229.78 Aligned_cols=307 Identities=13% Similarity=0.199 Sum_probs=237.7
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
...+.+.+|++||.++++|+.|..|+|+|++..-.... +.+ +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence 45689999999999999999999999999873311000 000 0
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
..+. +.+..++....-.|...|+.+.|.|....|++++.|++++++|+....... ..+
T Consensus 154 ~~~~--------------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K 211 (430)
T KOG0640|consen 154 ISGD--------------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK 211 (430)
T ss_pred ccCC--------------cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence 0000 000111111111288899999999999999999999999999987543210 011
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEc---CCCCCeEEEEEcCCCCC
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~ 851 (1086)
++ ....+|.++.|+|.|.+|++|.+ .++++||+++.++..... +|.+.|+++.+++ .++
T Consensus 212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 11 15678999999999999999997 789999999999876643 5888999999999 999
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEec-cccC-CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~-~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
+.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|..+++|.+.++.......-....+..
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-- 352 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-- 352 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence 99999999999999999999998886 4654 6899999999999999999999999999996633322211111211
Q ss_pred CCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 930 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
.--+...|+....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-++||+.|-.+++|--.
T Consensus 353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 123567788888888873 456799999999999998999999999999999999999999999999999643
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-26 Score=220.92 Aligned_cols=271 Identities=16% Similarity=0.192 Sum_probs=230.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC--CCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~--d~~i~i 463 (1086)
+..-.+.|.++.|+++|.+|++++.|.+++|||..++++++ ++..+...+..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44467899999999999999999999999999999998777 5667777899999988887 4555554 889999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
-++.+.+.++-|.||...|++++.+|.+ ..+++++.|++|++||++..+++..+.....++ ++|+|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997765 589999999999999999988888777666655 789999999999875
Q ss_pred CCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCC-Cc
Q 001396 544 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~ 620 (1086)
...|.+||++.- .+..++.-..........+.|+|||++++.++..+.+++.|.-+|..+..+..+..... -.
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999853 44555554422347889999999999999999999999999999999988876644322 24
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc-cccceeeeEEccC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 669 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~p~ 669 (1086)
..+|+||++++++|+.||+|.+|+++++..+...++ +...+.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 788999999999999999999999999999999988 5778888888754
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=242.19 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=243.6
Q ss_pred cCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCcc
Q 001396 313 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 392 (1086)
Q Consensus 313 ~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 392 (1086)
+..+|..+--.|.+|+..|.++++.|.|-+ +++|+.|.+|++||......... .|+ .+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccc
Confidence 345678888889999999999999999997 89999999999999976543321 121 123345678
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCc---------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
|.+++||+.|..|++.+....++|+|-...+. ++-+..-+||...++|.+|+|+.+. .++|++.||+++|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999999999999999765433 2223345699999999999999988 7999999999999
Q ss_pred EeCCCCce-eEEee-----cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee---EEecCCCC--ceEEEEEe
Q 001396 464 WDAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYS 532 (1086)
Q Consensus 464 wd~~~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~--~i~~~~~s 532 (1086)
||+...+. +..++ +..-++++++| ++++..|++|+.||.|.+|+....... ..-..|.. .|++++||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 99986543 33332 23446788888 558889999999999999997654432 23345554 89999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEE------CCCcEEEEEcCCCe
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 605 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 605 (1086)
+||++|++-+. |..+++||++.. +++....+.. ...+-..++|+|+.+.|++|+ ..|++.+||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999775 778999999865 4455555433 124567889999999999975 45789999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.+..+... ...|..+.|+|.-+.|++|+.||.+++|--.
T Consensus 449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 99988766 3468899999999999999999999997544
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-27 Score=220.65 Aligned_cols=285 Identities=17% Similarity=0.246 Sum_probs=227.5
Q ss_pred ceEeeecC--CCceEEEEEe-----ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-C
Q 001396 331 PMSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 402 (1086)
Q Consensus 331 V~~~~~sp--dg~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 402 (1086)
=.++.||| +++..+|++. ..|++.|-++..++-+.. +.-+| -++.+..++||++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCc
Confidence 36789999 4543333332 258899999875544432 22222 3478999999995 5
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
..+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.++++.+|...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888899999999995433 3455578899999999999998777 67777999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeCCCC-e
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG-A 560 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~-~ 560 (1086)
...+|+|. ...+++++|.|+++++||++.......+..|...+.++.|+.-. +.+++++. ++.|+.||++.- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999987 45699999999999999999988878899999999999999854 55566654 788999999864 4
Q ss_pred eeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCe-eEEEEcCCCCCCCCceEEEec-CCCEEEEEECC
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 637 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 637 (1086)
++..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...| ...+..+.|++ ++.++|+.+.|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence 567777777 899999999975 467789999999999998543 44444444 34577888887 67899999999
Q ss_pred CcEEEEEC
Q 001396 638 NRIKILET 645 (1086)
Q Consensus 638 g~i~iw~~ 645 (1086)
+.+.||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999984
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.2e-27 Score=249.59 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=241.4
Q ss_pred ceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC
Q 001396 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 410 (1086)
..-++||..+ +||+|.. ..|.+|+..+++.... ..-++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4557889655 5777764 6899999999986543 2223789999999999999999999
Q ss_pred CCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eecCCcceEEEeec
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 488 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~ 488 (1086)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999887666 5667 99999999998 34 799999999999999998877655 88999999999995
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
+|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++ ..|+.|++||..+|..+.....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 5778999999999999999999999999999999999999999 5567777765 4588999999999999888765
Q ss_pred ccccCCceEEEEEecCCCEEEE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
. ..|..+.|++..+.|++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999888877 4577899999999999999998774 46999999999999999999999999998
Q ss_pred CCC
Q 001396 646 PES 648 (1086)
Q Consensus 646 ~~~ 648 (1086)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.9e-27 Score=262.54 Aligned_cols=306 Identities=17% Similarity=0.242 Sum_probs=239.4
Q ss_pred cccceEEEEEecCCceEEEee--ccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEe
Q 001396 727 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 804 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~ 804 (1086)
+...|.++..+|||..+++++ .||.++||+...--. ....++..-...+.+ .. .|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~--m~--~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT--MD--DHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee--ec--cccCceeEEEE
Confidence 445689999999999999999 899999998653211 011122211111111 11 38999999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccC------------------ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 805 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 805 s~dg~~l~~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
+|||++||+|+| ..|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 7789998762 346778999999999999999 89999999999999999
Q ss_pred EcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 866 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
+..+.+.+.++.+|.+.|..+.|.|-|+||||-+.|++|+||++...... ..+..+..+......+..+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCee
Confidence 99999999999999999999999999999999999999999997763322 2344444434334568899999999999
Q ss_pred EE--Ee---CCeEEEEEcCCccceeccccCCccCEEEEEEeC--------CC-----C----EEEEEECCCcEEEEEcCC
Q 001396 946 LL--VH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 946 ~~--~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~s~~~Dg~v~vWd~~~ 1003 (1086)
++ +. -..+.|.+-.+-+.-.. +.||.+++..++|+| +| . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 98 32 23588888766655554 668999999999998 11 1 588999999999999977
Q ss_pred CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCC
Q 001396 1004 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1060 (1086)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~ 1060 (1086)
.+.+..+. .... -..+.++|+| ||..|++++.||+|.+..+.+.+..
T Consensus 314 ~RPl~vi~--~lf~-------~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 314 PRPLFVIH--NLFN-------KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CCchhhhh--hhhc-------CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 77664333 1111 2356899999 7999999999999999999876643
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8e-27 Score=236.43 Aligned_cols=293 Identities=14% Similarity=0.195 Sum_probs=237.3
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeec----cccceeeeeeeecCCCccEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
.+.+..|.-+|.||+++||+++ ..+++.+++|.=|++.+|+.... +|.- .....+++..- .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 4556788889999999999996 89999999999999999986521 1211 11222333322 4899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999998777 5889999999999987666 68999999999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+|.+.|.++.... -+..+-+|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeee
Confidence 9999999987643 3345555669999999999 55666778888889999999654 56777775 778999999
Q ss_pred CCCeeeeEEeccc-c--------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCCCCCCceEE
Q 001396 557 SEGAIKRTYQGLQ-L--------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 557 ~~~~~~~~~~~~~-~--------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 623 (1086)
...+++.+....+ . +...|++++..|....+++|+.+|.|++|-+.++ .++..+... ..|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 9998887765322 1 1237999999999999999999999999999887 344455433 3589999
Q ss_pred EecCCCEEEEEE
Q 001396 624 FNKNGTLLAVIA 635 (1086)
Q Consensus 624 ~s~~~~~l~~~~ 635 (1086)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999777663
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.7e-27 Score=238.60 Aligned_cols=282 Identities=15% Similarity=0.200 Sum_probs=232.1
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
..+.|.+++|+|...+=++.+..-.+.+|+..... ...++. .....+.++.|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~----------------------~~k~~s----rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS----------------------VRKTFS----RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh----------------------hhhhHH----hhccceeEEEeec
Confidence 45689999999987766666666667776543221 011000 1466789999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEE
Q 001396 807 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 885 (1086)
Q Consensus 807 dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~ 885 (1086)
||+++|.|++ |.|+|||+++...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999984 999999988877788899999999999999999999999999999999999999887799999999999
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccce
Q 001396 886 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 964 (1086)
Q Consensus 886 l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~ 964 (1086)
.+|+|- +.+++|||.||.|++||+.... ......-.+ .+|..+.|-|.|..+|++..+.++|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999996 4589999999999999998743 122222222 3699999999999999999999999999976665
Q ss_pred eccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001396 965 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1044 (1086)
Q Consensus 965 ~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 1044 (1086)
......|...|+|+++..|+..|+++|-|+.|+|||+.+.+.+..+.. +...++++.+| |++.++.|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~pvLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PGPVLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------ccceeeEEecC-CCceEEEec
Confidence 554556999999999999999999999999999999999998877761 12356788888 679999999
Q ss_pred CCCcEEEEcc
Q 001396 1045 TNGEVYVIEP 1054 (1086)
Q Consensus 1045 ~dg~v~vw~~ 1054 (1086)
.+|.+.+-+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999887743
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.2e-26 Score=219.41 Aligned_cols=276 Identities=18% Similarity=0.231 Sum_probs=221.9
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCC-ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
-.+.|.+++|||....+++.||-||+||+|+++.. ..... ....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceE
Confidence 35689999999966668889999999999999873 33321 155699999999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+|||.|++|+.||.+...++.++. -.+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998643 46789999999999887766689999999999999999999998886 55677777
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC--ee
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 561 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 561 (1086)
.. -..+++.+..++.|.+|++++....... ..-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 2348999999999999999775543322 122336889999998888888876 566777766665 44
Q ss_pred eeEEeccccc------CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 562 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 562 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
-.+|+.|... -..|++++|+|.-..|++++.||++.+||-+....+...+.+ ..+|.+++|+.+|.+++-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 4556666521 245788999999999999999999999999887777776654 34699999999999888654
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-26 Score=228.81 Aligned_cols=280 Identities=15% Similarity=0.210 Sum_probs=234.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC-cEEEEEEeCCCcEEEEeC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~l~l~s~~~d~~i~iwd~ 466 (1086)
-|.+.|.++... ++.|++|+.||.++|||.... ... .+.||.++|.+++|.-.+. .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 488999999888 889999999999999998763 333 5789999999888843332 115999999999999998
Q ss_pred CCCcee----EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-------------------------CCceeE
Q 001396 467 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 517 (1086)
Q Consensus 467 ~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------------------------~~~~~~ 517 (1086)
+.++.. +.-.||...|.++.. .++|..+++|+.|.+|.+|+.. ...++.
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 877543 344599999999987 5577899999999999999832 123455
Q ss_pred EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 518 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 518 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.+.+|..+|.++.|++ ...+++++. |.+|+.||+.++..+..+.+. ..+.++..+|..++|++|+.|..|+
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788899999999987 777888876 788999999999999888874 4899999999999999999999999
Q ss_pred EEEcCCCe---eEEEEcCCCCCCCCceEEEec-CCCEEEEEECCCcEEEEECCCCC-eeeeccccccceeeeEEccCCCc
Q 001396 598 IWDMNKVQ---LLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 598 iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
+||.+++. ...++.+| ...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.|+
T Consensus 326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 99999764 23445544 55799999999 45678899999999999999886 899999999999999986
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 709 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~ 709 (1086)
++..+++|+.|.+++++..
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ------------------CCceEEeccCcceEEEecc
Confidence 6778999999999999874
No 91
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2e-25 Score=250.52 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.3
Q ss_pred ecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCCCc-c----ccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 386 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999997 89999999999999999986532 1 122357799999999999999874 568999999
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEE-----EEEecC
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 534 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 534 (1086)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999888776 667899999955 6789999999999999999999888888888765433 335689
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
+.++++++.++..++.|++||++. ++++..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655567899999985 55565544322 12333333345558888899999999999998774 3334333
Q ss_pred CCCCCCceEEEecCC
Q 001396 614 GGLPENPRICFNKNG 628 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~ 628 (1086)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 334567889999864
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=6.8e-26 Score=212.53 Aligned_cols=254 Identities=16% Similarity=0.234 Sum_probs=214.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+..+ .....+|.+.|-.++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 66899999999999999999999999999999999885443 3357799999999999998776 789999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.++++........+.+. ++| +++|.+++.++.|..|.+.|.++.+....... .-.+..++|+-++.+++...+
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~G-- 167 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNG-- 167 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecC--
Confidence 999999998876555554 455 55788999999999999999988766554332 235667888877776666542
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
.|.|.|.....-+++..++.|. ....++.|+|+|+++++|+.|..+.+||++.--+++.+.... -+|..+.||
T Consensus 168 --lG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS 240 (313)
T KOG1407|consen 168 --LGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS 240 (313)
T ss_pred --CceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence 6789999988999999999988 889999999999999999999999999999988888876553 369999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
.||++||+++.|..|-|=++++|..+..+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEe
Confidence 99999999999999999888877555444
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.5e-26 Score=240.44 Aligned_cols=284 Identities=18% Similarity=0.301 Sum_probs=242.1
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE-EE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 397 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 397 (1086)
++.+.|.||+..|..+++.+.. .++++|.||++++|+-..++-+... .+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence 5668899999999999998887 4899999999999998776655432 25578888877 88
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 398 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 398 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+-+ |+-+|++|+.|.+|.+|...+...+. .+.+|+..|.+++...++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 875 56679999999999999999987665 6889999999999888775 89999999999995 567778899
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+|...|++++..+.. .++|||.|++|++| ..++...++.+|...|+.+++-+++.++ +|+. |+.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklW--k~~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLW--KGGTLLKTFSGHTDCVRGLAVLDDSHFL-SCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeec--cCCchhhhhccchhheeeeEEecCCCeE-eecC----CceEEEEec
Confidence 999999999886543 89999999999999 4577888999999999999998876654 5554 889999998
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
+|+.+..+.+|. .-++++....++..++++++|++++||+.. ++.+.+..+.. .++++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999998 899999988888999999999999999976 77777776543 488888888885 778899
Q ss_pred CCcEEEEECCCC
Q 001396 637 ENRIKILETPES 648 (1086)
Q Consensus 637 dg~i~iw~~~~~ 648 (1086)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999987744
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6e-26 Score=248.70 Aligned_cols=277 Identities=14% Similarity=0.198 Sum_probs=212.3
Q ss_pred ccccceEEEEEecCCceEEEeeccceeEEeeccCCcc------c------------------cCc-cccc---------c
Q 001396 726 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K 771 (1086)
Q Consensus 726 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~-~~~~---------~ 771 (1086)
.|.+.|.++.||+||++|++++.||.|+||.+-..+. . ... +... .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876211 0 000 0000 0
Q ss_pred cCCceecCCCCCceeeec-CCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCC
Q 001396 772 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 850 (1086)
Q Consensus 772 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 850 (1086)
..-.+....... +...+ ....||...|..+.||.++-+|-+.-|.+|++|++...+++..|. |.+.|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000001100000 00000 012369999999999998755444449999999999999999998 999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 851 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 851 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
+++++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987776555544 77999999999999999999999999999987776666666555544444
Q ss_pred CCceEEEEecCCC--EEEEEeCCeEEEEEcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 931 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 931 ~~v~~~~~s~dg~--~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|++++.|..|++|+++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 5799999987654 7777999999999998888877754334 3334567899999999999999999999985544
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=219.27 Aligned_cols=330 Identities=15% Similarity=0.162 Sum_probs=258.2
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..+++.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|.+++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 356777899999999999988766 899999999999999999999986 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEec-CCCCcEEEEEE--eCCC-cEEEEeCCCCceeE
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITC--GDDK-TIKVWDAVTGSRTY 473 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~d~~~l~l~s~--~~d~-~i~iwd~~~~~~~~ 473 (1086)
|++.+.++++++.|++.+||...-.-.+.....-.+|.+.- .+.-+ .+.. ...+ ..|+ +|+ .++.
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe-E~e~sDe~~~---d~d~~~~sD~~tiR-------vPl~ 266 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE-EEEHSDEHNR---DTDSSEKSDGHTIR-------VPLM 266 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh-hhhccccccc---ccccccccCCceee-------eeee
Confidence 99999999999999999999843221111100112332210 01111 1111 1111 1121 232 3578
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.+|.+.|.+..|.. .|+.+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+. |.+.++
T Consensus 267 ~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr----DtTFRL 340 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR----DTTFRL 340 (481)
T ss_pred eeeccccceEehhhhc--CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc----CceeEe
Confidence 8999999999998854 6779999999999999999999999999999999999999999999999876 778999
Q ss_pred EeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe-eEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 554 WNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 554 wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
||.+.. ..+..|+||. ..|+++.|..+ ..+++|+.|.+|++||+++.. ++.++... .+++.++.+..++.+
T Consensus 341 WDFReaI~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~~iI 413 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGHPII 413 (481)
T ss_pred ccchhhcceeeeecccc---cceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC---CccceeEeecCCceE
Confidence 999843 4467788888 99999999986 468999999999999998754 56677654 347899999999999
Q ss_pred EEEECCCcEEEEECCCCCeee----eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcccee
Q 001396 632 AVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 707 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw 707 (1086)
+.--++..|++||+...+..+ .-++|...|.|++|.... | -..|++++.|..+.-|
T Consensus 414 AiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh-------------------p-~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH-------------------P-ACNLFTCGFDRMVAGW 473 (481)
T ss_pred EeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC-------------------c-ccccccccccceeeee
Confidence 999999999999999765433 346888889999987432 1 2457888899999889
Q ss_pred eeee
Q 001396 708 KPLF 711 (1086)
Q Consensus 708 ~~~~ 711 (1086)
.+..
T Consensus 474 ~in~ 477 (481)
T KOG0300|consen 474 KINT 477 (481)
T ss_pred Eecc
Confidence 8763
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=8.3e-27 Score=232.69 Aligned_cols=285 Identities=17% Similarity=0.240 Sum_probs=241.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 66799999999999999999999999999999998876 223336778888999999999999 788899999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+...+...++.||++.|+++.|.-.. ..+++|+.|.+|+.||+....+..+... ...+..++.+ +..++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence 99999999999999999999986443 3499999999999999998766554432 2334444444 445666665
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC--CCCCceEE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 623 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 623 (1086)
+..|+.||.++..+......+ +.|.++..++++..+++++.|.++.+.|+++.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 667999999999999888875 4899999999999999999999999999999998888765432 23478899
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCCeeeeccccccc--eeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 624 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
|||++.|+++|+.||.|+||++.+++....+...... |+++.|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999988887765554 9999997 568889999999
Q ss_pred Cccceee
Q 001396 702 NKSEVEK 708 (1086)
Q Consensus 702 ~~i~vw~ 708 (1086)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9998883
No 97
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.6e-25 Score=246.74 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=211.3
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc----------ccceEeccccccEeEEEecC-CCCcEEEEEEeC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 457 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~ 457 (1086)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3456667777888777788877777777776544322 21224679999999999999 777 8999999
Q ss_pred CCcEEEEeCCCC-------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 458 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 458 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
|++|++||+.++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999988888888999999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCe-
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 605 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 605 (1086)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ...+..+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999986 7789999999999998888876 23345678999888888754 47899999998754
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeeeccc-cccceeeeEEcc
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 668 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~p 668 (1086)
++.....+. ...+....|+++++++++++ .|+.|++||+.++..+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 23355667899999999887 599999999998876655433 233455555554
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=251.26 Aligned_cols=280 Identities=17% Similarity=0.242 Sum_probs=243.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
.+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 366788899898 67899999999999999999876663 3889999999999987555 89999999999999999
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
+|.+.+.+.+|...|.++.. ...++++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 99999999999999999976 33578899999999999999999999999999999999987 889999987
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCCCCCCCceEEEec
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
++.|.+||+.+++++.++.+|. ..|.++.+.+. .++++|+.|++|++||+.++ +++.++..|... +..+. .
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l~--~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSLL--L 421 (537)
T ss_pred CceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--ccccc--c
Confidence 6689999999999999999988 99999988776 89999999999999999999 899999877553 43333 3
Q ss_pred CCCEEEEEECCCcEEEEECCCCCeeeeccc-cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 627 NGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
.+++|++++.|++|++||..++..+..+.+ +...|.++.+. ...+++++.+++++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVK 477 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeE
Confidence 578999999999999999999999999998 56666655543 35578899999999
Q ss_pred eeeeeecCCc
Q 001396 706 VEKPLFARPS 715 (1086)
Q Consensus 706 vw~~~~~~~~ 715 (1086)
+||+......
T Consensus 478 l~dl~~~~~~ 487 (537)
T KOG0274|consen 478 LWDLRSGTLI 487 (537)
T ss_pred EEecccCchh
Confidence 9998754433
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=8.5e-26 Score=231.23 Aligned_cols=291 Identities=14% Similarity=0.252 Sum_probs=220.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|+..|.++++.|.|.+|++|+.|.+|++||+..-.. .+++.. .....|.++.|++.|.++ +..+....+
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~i--Lvvsg~aqa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQI--LVVSGSAQA 238 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeE--EEEecCcce
Confidence 788999999999999999999999999999999975432 232222 234479999999999964 444445679
Q ss_pred EEEeCCCCceeE-------------EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecC-----C
Q 001396 462 KVWDAVTGSRTY-------------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDA-----P 522 (1086)
Q Consensus 462 ~iwd~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~-----~ 522 (1086)
+|+| +.|..+. .-+||...+++.+|+|.. ...+++++.||++|+||+...+... .+.. .
T Consensus 239 kl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 239 KLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999 5554432 236799999999999874 4589999999999999998765433 2221 2
Q ss_pred CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc--CCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--HNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
.-+++.++|++||+++|++.. +|.|.+|+..+...--.+.-...| ...|+++.|+++|++|++-+.|+++++||
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~----DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCL----DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred ccCceeeecCCCcchhhhccc----CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 226899999999999998886 778999997544322222221222 24899999999999999999999999999
Q ss_pred cCCCe-eEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 601 MNKVQ-LLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 601 ~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
++..+ ++.....-.....-..++|||+.++|++|+. .|.+.+||..+-..+..+......|..+.|+
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh------ 466 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH------ 466 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec------
Confidence 98653 4444433222234578999999999999864 4789999999888888888777778888887
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceee
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~ 708 (1086)
|.-+.+..++.||+++++-
T Consensus 467 ----------------pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 467 ----------------PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ----------------chhhheeeecCCCceEEEE
Confidence 4556677778888887753
No 100
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.6e-23 Score=228.67 Aligned_cols=568 Identities=12% Similarity=0.113 Sum_probs=354.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCc-EEEEEEeCCCcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-l~l~s~~~d~~i~iw 464 (1086)
+.|-...-..-.||+|+++++.+..+ .|.||...+|++++ .+.+|..++..+.+.|.... .++.+++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 34444444456799999999888655 69999999999888 68899999999999887763 478899999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeeccc-CCccEEE-EEEcCC------------eEEEEEcCCCcee-EEecCCCCceEEE
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIF-SISVDG------------KIKAWLYDSLGAR-VDYDAPGLGCTRM 529 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~-s~s~dg------------~i~vwd~~~~~~~-~~~~~~~~~i~~~ 529 (1086)
|...+..++++..+. ++.++.+.+. -+...++ ....|. +++-+.+.+.... ..+......-.++
T Consensus 88 d~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 999999998886443 3333322110 0000122 111111 1111111111000 0000001113567
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeee-eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--Cee
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 606 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~ 606 (1086)
.+++.|.+..... +..+.+|+..++... .....+..|...+.+.+++|+++++++|..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877765 456889988775511 11112222335689999999999999999999999996443 222
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
......|-+...|.+++|+++|.+|++|+..|.+.+|.+.++... -+.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP------------------------------- 289 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP------------------------------- 289 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc-ccc-------------------------------
Confidence 222223344557999999999999999999999999999877411 111
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
. -...|..+.+|||+...+....|+.|.+-....-...
T Consensus 290 -------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--- 327 (792)
T KOG1963|consen 290 -------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--- 327 (792)
T ss_pred -------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh---
Confidence 0 2356788899999998888888988888765432110
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecC-CCEEEEEeCCeEEEEEccCceEEEEEc-----CCC---
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS--- 837 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~dg~i~iwd~~~~~~~~~~~-----~~~--- 837 (1086)
.++.-..+.+. .. ......-.+.++++|- +..+.-+..|.|++||+.+.+.+..+. .+.
T Consensus 328 -----~tIsgi~~~~~------~~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~ 395 (792)
T KOG1963|consen 328 -----STISGIKPPTP------ST-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV 395 (792)
T ss_pred -----hhccCccCCCc------cc-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence 01110111100 00 0013445667888884 444444457999999998877665543 122
Q ss_pred ---CCeEEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCceeE-----EEeccccCCeEEEEEeCC-C-CEEEE
Q 001396 838 ---PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEVI-----SKLEGHSKRVTGLVFSDA-L-NILVS 897 (1086)
Q Consensus 838 ---~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~~-----~~l~~h~~~v~~l~~spd-g-~~l~s 897 (1086)
-.+++++.+. .|.+++|+- .|| .+++|-......- .....|...+...+|.+. . ..+++
T Consensus 396 n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 396 NIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred eeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 2468888888 699999863 333 6788977654322 222358877777666543 3 37999
Q ss_pred EeCCCcEEEEECCCCcee-----eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCc
Q 001396 898 SGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS 972 (1086)
Q Consensus 898 ~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~ 972 (1086)
++.||.++||-+...+.. .+.+.....-+. .++++++||.||..|+++.++.|.+||..+...+........
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~ 551 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRN 551 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccc
Confidence 999999999998432211 122222222233 378999999999999999999999999998433222232234
Q ss_pred cCEEEEEEeC----CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCC--------C-CccCcccceEEEECCCCCCE
Q 001396 973 VPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP--------T-TSCLHVYPHAIAAHPLKPTQ 1039 (1086)
Q Consensus 973 ~~v~~l~fs~----dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~p~~~~~ 1039 (1086)
.++..++|.. ++. +.....+.+.+|++-+..+...+........ . ...+...-.-+++.| ..
T Consensus 552 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~ 626 (792)
T KOG1963|consen 552 WPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---EL 626 (792)
T ss_pred cchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cc
Confidence 4555555543 332 2333567899999999988763332222222 0 001111112234444 23
Q ss_pred EE--------EEeCCCcEEEEccCCCC
Q 001396 1040 FA--------VGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1040 l~--------~~~~dg~v~vw~~~~~~ 1058 (1086)
+. ..+.|+.|.+++...++
T Consensus 627 ~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 627 LLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred hhhhhhhhhhcccccceEEEecCCCch
Confidence 33 67788888888876555
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.4e-26 Score=240.98 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=208.4
Q ss_pred EEEEC-CCCCEEEEEeCCCEEEEEEecCCCcc---ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-
Q 001396 395 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 469 (1086)
Q Consensus 395 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~- 469 (1086)
++..+ |.++||.+|+.||.|++|++...... .....+..|.+.|++++...+|+ .|+|+|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 46788999999999999998754431 12446788999999999999999 7999999999999999887
Q ss_pred -ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eE--------Eec-CCCCceEEEEEecCCCE
Q 001396 470 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 537 (1086)
Q Consensus 470 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~ 537 (1086)
-+..++..|...|.++++. ..+..++++||-|+.|.+||+.++.. .. .+. ++...|++++..+.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 33567999999999999999997733 11 122 55668999999999988
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+++|+. ++.+++||.++++.+..++||. ..|..+..++||.+++++|.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 888887 5569999999999999999998 9999999999999999999999999999999999999988755
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.|+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4899999999999999999999998888764
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7e-26 Score=238.65 Aligned_cols=352 Identities=18% Similarity=0.222 Sum_probs=262.3
Q ss_pred cCCCCce---EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 326 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 326 ~h~~~V~---~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
.|...|. ++..+..+.+.|.+|+.||.|++|+...-....... -...+..|.+.|..++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCC
Confidence 3444555 555554443359999999999999986543321100 011267899999999999999
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCCc--eeE------
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTY------ 473 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~-s~d~~~l~l~s~~~d~~i~iwd~~~~~--~~~------ 473 (1086)
+.|++++.|-+|++|+...+. -....++..|.+.|.|+++ .++.. ++||||-|+.|.+||+.+|. .+.
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999998874 1223367889999999999 66666 89999999999999999883 332
Q ss_pred --Eee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 474 --SFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 474 --~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
.+. |+...|++++.+ ++|..+++|+..+.+++||.++.+.+..+.+|...|..+..++||+.+++++. |++
T Consensus 163 ~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 233 788899999884 46679999999999999999999999999999999999999999999999987 889
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
|++||+...+++.++..|. ..|.++..+|+-.++++|+.||.|+.=|+.+......+-.. ..+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCC
Confidence 9999999999999999988 77999999999999999999999999999985333322212 124677777765556
Q ss_pred EEEEECCCcEEEEECCCCCeeeecccc-------ccceeeeEEccCCCceeccccCCeeee-cCCCCCCcccceeccccC
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVL-------SDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~~~~~~~~~~~~-~~~~s~d~~~l~s~~~d~ 702 (1086)
+-+++.|+.|+-|.......+...... ...+.+....|....-+ ..++ ....-.|.+.+++-...|
T Consensus 312 ~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G------g~ai~k~~mL~dkRhVlTkDa~g 385 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG------GAAIKKHAMLNDKRHVLTKDAKG 385 (735)
T ss_pred ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC------chhhhhhhhhcCcceEeeecCCC
Confidence 688889999999987643222111111 01111111111111111 1111 111146788999999999
Q ss_pred ccceeeee
Q 001396 703 KSEVEKPL 710 (1086)
Q Consensus 703 ~i~vw~~~ 710 (1086)
.+.+||+-
T Consensus 386 nv~lwDIl 393 (735)
T KOG0308|consen 386 NVALWDIL 393 (735)
T ss_pred CEEEEEee
Confidence 99999964
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.9e-25 Score=224.29 Aligned_cols=250 Identities=21% Similarity=0.277 Sum_probs=214.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccce-------------Ee--ccccccEeEEEecCCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL-------------EI--DAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~-------------~~--~~h~~~v~~v~~s~d~~~l 450 (1086)
...|.-+|.+++++||+++..+++.+++|.=|++.+|+..+... .. .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 55799999999999999999999999999999999887431110 11 27888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
+|++|+.|..|.|||..+.+.++.+++|.+.|.+++|.. ....+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 999999999999999999999999999999999999954 445799999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
...-++.+-+++. |+++++|++. -+....|.++. +.+-|++|-.+ .++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888877766 7889999994 34445677766 88999999765 68999999999999999999988776
Q ss_pred cCCCC----------CCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 611 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 611 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
....+ ...|++++..|...++++|+.+|.|++|.+.++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 43211 126788999999999999999999999998876
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.4e-25 Score=211.06 Aligned_cols=274 Identities=16% Similarity=0.160 Sum_probs=216.6
Q ss_pred cCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 387 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 387 ~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
...++.|.+|+||| ...++++++-|++|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 555666889999999999987422222 24568999999999999998 799999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++ +..+..|.++|..+.|.+..+-..|++||.|++|++||.+...++..+..++ .+.++.. -...++.+..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5667789999999999887777799999999999999999988888777665 3333332 2234455444
Q ss_pred CCceeEEEEeCCCCeeee-EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--eeEEEEcCCCC-------
Q 001396 546 EGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 615 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------- 615 (1086)
++.|.+|+++.+.... ...... +..+++++..+|....+.|+-+|.+.|..++.+ +.-..+..|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 6679999997654322 222221 357899999999888899999999999999886 33344444432
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
...|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+.++...
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence 3457889999999999999999999999999988898999999999999998554443
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=226.61 Aligned_cols=293 Identities=11% Similarity=0.156 Sum_probs=234.2
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
+-+..|.||.++|.|++=+|..-..+|+|+.||.|+|||+.+..+... +..|.+.|..+++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICV 117 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEe
Confidence 445567999999999999998734699999999999999999888766 7789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
.. ..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||.+ |.|||.....++..+.--
T Consensus 118 ~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smswG 186 (433)
T KOG0268|consen 118 TQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSWG 186 (433)
T ss_pred cc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeecC
Confidence 87 67889999999999998873 222 3322 33455666655566 68888865 999999999999999888
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
...|.++.|+|... ..|++++.|+.|.+||++...++...... ...+.++|+|.+-.++++.. |..++.+|++.
T Consensus 187 ~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~ 260 (433)
T KOG0268|consen 187 ADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMRN 260 (433)
T ss_pred CCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhhh
Confidence 88999999988754 58888899999999999998876644322 24467899996666666654 77899999875
Q ss_pred C-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 559 G-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 559 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
- .++..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+......... ....|.++.||.|.+++++|++|
T Consensus 261 l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 261 LSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred hcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCC
Confidence 3 4455566665 99999999999999999999999999999877644333221 12458999999999999999999
Q ss_pred CcEEEEECCCCCee
Q 001396 638 NRIKILETPESNSV 651 (1086)
Q Consensus 638 g~i~iw~~~~~~~~ 651 (1086)
+.|++|.....+.+
T Consensus 337 ~nvRlWka~Asekl 350 (433)
T KOG0268|consen 337 GNVRLWKAKASEKL 350 (433)
T ss_pred cceeeeecchhhhc
Confidence 99999987754433
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=210.01 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=203.3
Q ss_pred CCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001396 793 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~ 869 (1086)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 359999999998 689999998 89999999999999999999999999999998 554 889999999999999999
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 949 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 949 (1086)
.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.|++-.|+......+. . .-+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK---N------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC---C------cceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999987643322222 2 134599999999999999
Q ss_pred CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceE
Q 001396 950 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1029 (1086)
Q Consensus 950 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1086)
.+.|-+|.+.+......... ..++.++.|. ++..|++|+.|+.|.+||.+++.+.+.+. .|...+..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 99999999998777665443 3566676665 56688999999999999999988887776 2344455454
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1030 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1030 ~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
.--.| ++.+|++++.||.|+|||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 44566 6789999999999999999765
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=9e-25 Score=219.38 Aligned_cols=282 Identities=16% Similarity=0.191 Sum_probs=244.4
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..+.++...|... .+.+|+.|..+.++|..+++.+.. ++||.-.|..+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788999998854 589999999999999999988875 88999999999999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec--CCcceEEEe
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC 486 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~~ 486 (1086)
+.|..|+||......+.. ....|.++|+.+...|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766443 5678999999999999999 899999999999999999998877653 234578888
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
|+| ||-.|.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|+++.. ++.|.+||++.-+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 965 7789999999999999999999999999999999999999999999999986 6669999999988888888
Q ss_pred cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEE
Q 001396 567 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 644 (1086)
Q Consensus 567 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 644 (1086)
... ...+.++.|.+.|.+++.++.+=.|++++-.+.+ .+..+..+ ......+.|..+.+++++++.|..++++.
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEee
Confidence 765 4579999999999999999888777777755544 44444444 33578899999999999999999988875
Q ss_pred C
Q 001396 645 T 645 (1086)
Q Consensus 645 ~ 645 (1086)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.6e-25 Score=210.96 Aligned_cols=313 Identities=13% Similarity=0.154 Sum_probs=233.6
Q ss_pred eeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccc
Q 001396 651 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 730 (1086)
Q Consensus 651 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 730 (1086)
+..+++|...|++++|+ .||+++++++.|++|++|++..-.......++..- ..+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCC
Confidence 34678999999999996 78999999999999999997643222222222111 2346
Q ss_pred eEEEEEecCCceEEEee-ccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 731 ISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.+.++|+||-+.++... ....+++|.+...+. |.... ...-||-.. +. .-|.-.+..+-...+++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence 78899999988776654 457899998765421 22111 111122100 00 12566777788888999
Q ss_pred EEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---c-----eeEEEecccc
Q 001396 810 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS 880 (1086)
Q Consensus 810 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~ 880 (1086)
++++++ |..|.+|++. |+.+..+......-+..++|| +|++||+++----|++|.+-- | ..+..++||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999998 6789999998 899888887777778899999 999999999888999998732 2 2456789999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee--eeeeeeccCCCc-cCCCCceEEEEecCCCEEEEEeCCeEEEEE
Q 001396 881 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYE 957 (1086)
Q Consensus 881 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd 957 (1086)
..|..++||++...++|++.||+++|||++-.... ....++...... ...+....+++||.|+.||++....+++|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999998742111 112222221110 011234489999999999999999999999
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
.++|+....+...|...|+++.|++||++++|+| |..++|..-..|
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999988888888999999999999999999996 788888763333
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.9e-24 Score=193.31 Aligned_cols=299 Identities=15% Similarity=0.224 Sum_probs=232.1
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEec------CCCc--cc----cceEeccccccEeEEEecCCCCcEEEEE
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH------GGSD--AR----QQLEIDAHVGNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~------~~~~--~~----~~~~~~~h~~~v~~v~~s~d~~~l~l~s 454 (1086)
-.....|.+++|+|.|.+.|+|+...+.+|--.. .+.. .. ....-+.|.+.|.|.+|+|+|. ++++
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liat 106 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIAT 106 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEe
Confidence 3456789999999999999999999998875432 2111 00 0112346899999999999999 9999
Q ss_pred EeCCCcEEEEeCCCCce-----eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 455 CGDDKTIKVWDAVTGSR-----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
|+.|++|++.-.....+ -..|.-|.+.|..++|...+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~------------------------------------- 149 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE------------------------------------- 149 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-------------------------------------
Confidence 99999999875543322 134445666666666632221
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 609 (1086)
..|..|++++. ++..|++-|..+|+....+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-..++.+
T Consensus 150 ---s~~~il~s~ga---gdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~ 219 (350)
T KOG0641|consen 150 ---SGGAILASAGA---GDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT 219 (350)
T ss_pred ---cCceEEEecCC---CcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee
Confidence 23455666553 58889999999999999999998 777665 445678899999999999999999888887
Q ss_pred EcCC--CC---CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeee
Q 001396 610 IDAG--GG---LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684 (1086)
Q Consensus 610 ~~~~--~~---~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 684 (1086)
+... ++ ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|+
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs----------------- 282 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS----------------- 282 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-----------------
Confidence 7532 21 2468899999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
|...++++++.|..|++-|+...-..+....... .|...+-.+.|.|..-.+++.+.|.++.+|-++
T Consensus 283 -----p~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 283 -----PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -----CCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6678999999999999999865433333322222 377888889999999889999999999999653
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.6e-26 Score=222.29 Aligned_cols=284 Identities=14% Similarity=0.224 Sum_probs=234.4
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEE
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 509 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 509 (1086)
.+.||.+.|.+++=+|..-. .++||+.||.|+|||+.+..++.+++.|.+.|..+++.. ..+++++.|++|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998732 699999999999999999999999999999999999954 4799999999999998
Q ss_pred cCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE
Q 001396 510 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 510 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....++..+.-.. ..|.++.|+|....|+.
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7663 222322 2334556666667778888875 59999999888998888766 78999999998766655
Q ss_pred -EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-CeeeeccccccceeeeEEc
Q 001396 590 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 667 (1086)
Q Consensus 590 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~ 667 (1086)
++.|+.|.+||++.+.++..+..... .+.++|+|++-.++++..|..++.+|+... .++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 56999999999999999988765533 478999998888999999999999999865 6778888899999888886
Q ss_pred cCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEee
Q 001396 668 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 747 (1086)
Q Consensus 668 p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 747 (1086)
|-|+-+++|+.|.+|++|............. .....|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYht-----kRMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-----KRMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhH-----hhhheeeEEEEeccccEEEecC
Confidence 6688899999999999999774433322211 1345789999999999999999
Q ss_pred ccceeEEeeccC
Q 001396 748 SNGVHLMWRWPR 759 (1086)
Q Consensus 748 ~dg~i~vw~~~~ 759 (1086)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998654
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=217.94 Aligned_cols=281 Identities=17% Similarity=0.234 Sum_probs=242.3
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
..+.++...|....+++|+.|.++.++|..+++.+. .++||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999987666 6889999999999999999 79999999999999998888
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--CCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
.......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.+|.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999866 5679999999999999999999887765553 346899999999999999876 8
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
+.|.+||+.++..+..|.+|. ++|..+.|+.+|-+++++.+|+.|++||++.-+...++...... ++.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 889999999999999999988 99999999999999999999999999999999888888776654 68999999999
Q ss_pred CEEEEEECCCcEEEEECCC--CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 629 TLLAVIANENRIKILETPE--SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
.+|+.++.+=.|++++-.+ -..+..+..|.+..+++.|. ...+++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 9999998776666666443 35556666666666666665 45677888888887766
Q ss_pred ee
Q 001396 707 EK 708 (1086)
Q Consensus 707 w~ 708 (1086)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 54
No 112
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.4e-25 Score=205.62 Aligned_cols=283 Identities=15% Similarity=0.213 Sum_probs=226.4
Q ss_pred EEEEECC--CCCEEEEE------eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 394 NRVVWSP--DGSLLGVA------YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 394 ~~l~~sp--dg~~las~------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.++.||| ++++.++. ...|.+.|-++..++.+.....+ .-.+.+..++|++.... .+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~-~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHEN-QVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcc-eEEEEecCceEEEec
Confidence 4688998 34433322 35788999999766555544333 35678999999998776 688888899999999
Q ss_pred CCC-CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
+.. ..+++.++.|...|.++.|+.. ++..++++|.|++|++|+......+.++.+|...|...+|+| ..+.+++++.
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 643 4678999999999999999876 456777789999999999999999999999999999999999 4667777764
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCe-eEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~ 621 (1086)
++.+++||++.......+..|. ..+.++.|+.-. ..+++|+.|+.|++||++.-+ ++..+.+| .-.|..
T Consensus 169 ----d~~l~lwdvr~~gk~~~i~ah~---~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh--~~AVRk 239 (311)
T KOG0277|consen 169 ----DGTLRLWDVRSPGKFMSIEAHN---SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH--GLAVRK 239 (311)
T ss_pred ----CceEEEEEecCCCceeEEEecc---ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC--ceEEEE
Confidence 8899999998655555577777 899999999754 566779999999999998754 55666554 457999
Q ss_pred EEEecC-CCEEEEEECCCcEEEEECCC-CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 622 ICFNKN-GTLLAVIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 622 v~~s~~-~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
+.|||. ..+|++++.|-+++|||... ...+.....|.+-+..+.+++ -++.++++.+
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~---------------------~~~~~vAs~g 298 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL---------------------FDPGQVASTG 298 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc---------------------ccCceeeecc
Confidence 999994 56899999999999999884 455666677777777777773 3678899999
Q ss_pred ccCccceeee
Q 001396 700 AENKSEVEKP 709 (1086)
Q Consensus 700 ~d~~i~vw~~ 709 (1086)
-|+.+.+|+.
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999984
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-24 Score=233.64 Aligned_cols=274 Identities=20% Similarity=0.260 Sum_probs=237.3
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.-+.|| ....||+|... .|++|+..+++... + ...+.+.|+++.|+++|. +|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 346788 45567776444 59999999987433 2 223488999999999999 89999999999999999999999
Q ss_pred Eeec-CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-ecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 474 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 474 ~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... +..|...|..+.|++|++++++|+. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9999 99999999994 45899999999999999998887665 8889999999999999999999986 7789
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCC-CEEEE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.|||....+++..+..|. ..|.+++|+|-. ..|++ |+.|+.|++||..+++.+..+... ..|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence 999998889999999988 999999999975 45566 458999999999999999888754 348999999988
Q ss_pred CEEEEE--ECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 629 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 629 ~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
+-|+++ ..++.|.||+..+...+..+.+|...|..++++ |||..+++++.|.++++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF 457 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence 766664 457889999999999999999999999999996 78999999999999999
Q ss_pred eeee
Q 001396 707 EKPL 710 (1086)
Q Consensus 707 w~~~ 710 (1086)
|++-
T Consensus 458 w~~f 461 (484)
T KOG0305|consen 458 WNLF 461 (484)
T ss_pred cccc
Confidence 9965
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.3e-24 Score=205.53 Aligned_cols=272 Identities=16% Similarity=0.227 Sum_probs=223.4
Q ss_pred EEEEeCCCEEEEEEecCCC---------ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 405 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
|++|+....|.=+++.-.. .+.+...+..|.++|+++|.+ +. +++|||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 4556555555555543221 022344677999999999995 56 8999999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
-.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++++|.|++.++.+. |..+++||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence 99999999999987655558999999999999999999999999999999999999999999999886 78899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+-+|+.-....-.. ....+.|+|.|.+++.++.+ .|-+|.+.+......+.... .+.++.|- ++..+++|+
T Consensus 156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~---r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK---RILCATFL-DGSELLVGG 226 (362)
T ss_pred hhcCccceeeccCC----cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc---cceeeeec-CCceEEEec
Confidence 99988766655433 34559999999998888765 58899999887777665442 24455554 567899999
Q ss_pred CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 636 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
+|+.|.+||..+..+...+.+|...|..+.+-. .|++.+++++++||.|++||++...
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEe--------------------cCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999999999999887432 4788999999999999999987553
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-21 Score=213.28 Aligned_cols=280 Identities=16% Similarity=0.213 Sum_probs=226.2
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
..|+.+-+.++|.|+|+ +|.+++.||.|++|+...-..... .+.-+...|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccc
Confidence 47888999999999999 588888999999999876532211 022266777777764 559
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887543 2445667899999999999 8999999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+.++| ++.+|++.+.||.|++||++++.....+..- ...+..++|+|+|..++.... ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99955 6679999999999999999988776654332 235778999999766666554 778999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.+++....+.....+ ..+..+.|+|+|+||++++.+|.|.|||.++... |.....|.+++|.|+.+.+-....
T Consensus 218 ~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred CCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence 999988888765522 3489999999999999999999999999998222 333456899999999887766655
Q ss_pred CCcEEEE
Q 001396 637 ENRIKIL 643 (1086)
Q Consensus 637 dg~i~iw 643 (1086)
.|...+|
T Consensus 291 ~g~~~~~ 297 (933)
T KOG1274|consen 291 LGTLGVS 297 (933)
T ss_pred ccccccC
Confidence 5555554
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-23 Score=203.10 Aligned_cols=270 Identities=20% Similarity=0.274 Sum_probs=216.6
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.+.|+.|.|+|.+.. |++++.||++++||+....+... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 468999999999986 56667999999999988755432 23889999999997 567889
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEee
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 487 (1086)
|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 9999999999999987553 678999999999998777 79999999999999988765555554 3447888865
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecC--CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC----ee
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI 561 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~~ 561 (1086)
.+..|+.|+.|..+.+||+++......... -.-.+.++++-|++.-.++++. +|.|.+=.++.. ..
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 456899999999999999998776653322 2237899999998887887776 555655444443 33
Q ss_pred eeEEeccccc------CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 562 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 562 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
...|+.|... ..+|++++|+|--..+++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 4455555421 247899999999999999999999999999999988888654 23589999999999999987
Q ss_pred C
Q 001396 636 N 636 (1086)
Q Consensus 636 ~ 636 (1086)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.8e-25 Score=202.75 Aligned_cols=253 Identities=20% Similarity=0.325 Sum_probs=210.3
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 462 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~ 462 (1086)
+...|++.|..+...--|++||+|+.|++|+|+.++.+.....+.++.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4668999999998888999999999999999999998887777789999999999999976 677 899999999999
Q ss_pred EEeCCCCce--eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc---eeEEecCCCCceEEEEEecC---
Q 001396 463 VWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN--- 534 (1086)
Q Consensus 463 iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d--- 534 (1086)
||.-++|+- .+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999887753 4567789999999999999999999999999999999988762 23355677788999999986
Q ss_pred C-----------CEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCC----CEEEEEECCCcEE
Q 001396 535 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 597 (1086)
Q Consensus 535 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~ 597 (1086)
| +.|++++. |..|.||+...++ ..+++.+|. +.|+.++|.|.- .+|++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 5 56888876 7789999988764 334577777 999999999974 5789999999999
Q ss_pred EEEcCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 598 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 598 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
||..... .-..++. +.-...+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 9987632 1111221 11234588999999999999999999999997553
No 118
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.6e-23 Score=217.54 Aligned_cols=216 Identities=15% Similarity=0.170 Sum_probs=162.0
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCccc---cceEeccccccEeEEEecCCCCcEEEEEEeCCCc
Q 001396 385 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 460 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~ 460 (1086)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-..+ ....+.+..-.|.++.|+|.... +++++ ..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 4889999999999999 67789999999999999998543221 11223333447899999998875 45544 4889
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCC-ceEEEEEecCCCEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 538 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~d~~~l 538 (1086)
++|||+.+++.+..+.+|...|.++.| +.||.+|++.+.|+.|+|||.+.... +.....|++ .-..+.|..+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999999 67899999999999999999886543 445555554 34556777776677
Q ss_pred EEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCee
Q 001396 539 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~ 606 (1086)
++.+.+......|++||.+.. ..+.++.-.. ...|.---|.||.+.++- |-.+.++..+.+...++
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 777665555678999998753 3444444332 234555568899877665 44677888888876654
No 119
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.9e-23 Score=232.20 Aligned_cols=247 Identities=12% Similarity=0.175 Sum_probs=189.5
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc--------eeEEeecC
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 478 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h 478 (1086)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 55678899999876543 3368899999999999997 56 89999999999999998642 34567899
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
...|.+++|+|.. ..+|++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998753 2356799999999999999988776665 4568999999999999998875 67899999999
Q ss_pred CeeeeEEecccccCCce-----EEEEEecCCCEEEEEECCC----cEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCC
Q 001396 559 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
++.+..+.+|. +.+ ....|++++.++++++.++ .|+|||++. ++++..+..+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999887 433 2234568999999988764 799999995 5667666555443222333334568
Q ss_pred CEEEEEECCCcEEEEECCCCCeeeecc--ccccceeeeEEccC
Q 001396 629 TLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPI 669 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~p~ 669 (1086)
.++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 8999999999999999987632 2222 13345556666653
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=201.01 Aligned_cols=307 Identities=16% Similarity=0.183 Sum_probs=219.7
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE----EecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
..+++|.+.|++++| +.||++|++++.|+.|++|+++...... ....+-+..+.+.|+||.+-++..... .
T Consensus 80 ~~LKgH~~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~---g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR---G 154 (420)
T ss_pred hhhhccCCceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc---C
Confidence 457899999999999 5689999999999999999988744321 122233356889999999987766543 3
Q ss_pred eeEEEEeCCCC---eeeeE------EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 549 SFLVEWNESEG---AIKRT------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 549 ~~i~iwd~~~~---~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
..+++|-+... ..... +.-+..|.-.+..+-...++.+|++++.|..|.+|++. |+.+..+.... ..-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccc
Confidence 36888865422 11111 11122223456666667778999999999999999998 88888887543 335
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
...+.||+|+++++++-.-.|++|+.--+ .||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~-----------------------------------------kdG~fq---- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFT-----------------------------------------KDGTFQ---- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEec-----------------------------------------cCcchh----
Confidence 77899999999999999889999974311 011000
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
...|++. ..+|...|..++|+++..++++.+.||..++||.+..-.... .+++.
T Consensus 267 --ev~rvf~---------------LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q-------Dpk~L-- 320 (420)
T KOG2096|consen 267 --EVKRVFS---------------LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ-------DPKIL-- 320 (420)
T ss_pred --hhhhhhe---------------eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC-------CchHh--
Confidence 1122222 245999999999999999999999999999999865421100 11110
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc-CCCCCeEEEEEcCCCCCEEEEEeC
Q 001396 780 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD 858 (1086)
Q Consensus 780 ~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~ 858 (1086)
..|. .+.......-..++++|+|+.||.+....++++..++|+....+. .|...|.+++|++ +|+++++++
T Consensus 321 k~g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG- 392 (420)
T KOG2096|consen 321 KEGS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG- 392 (420)
T ss_pred hcCC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-
Confidence 1111 111112333448999999999999999999999999998877765 4889999999999 999999887
Q ss_pred CCeEEEEE
Q 001396 859 DSTILIYN 866 (1086)
Q Consensus 859 dg~v~iwd 866 (1086)
|..+++..
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 77888875
No 121
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.5e-22 Score=216.81 Aligned_cols=514 Identities=15% Similarity=0.146 Sum_probs=325.6
Q ss_pred cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcC
Q 001396 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD 511 (1086)
Q Consensus 433 ~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~ 511 (1086)
+-...-....||+|++ +++... +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3333334567999999 444333 668999999999999999999999999999887664 678899999999999999
Q ss_pred CCceeEEecCCCCceEEEEEec---CCCEEEEEe-eC--------CCCceeEEEEeCCCC--eeeeEEecccccCCceEE
Q 001396 512 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCG-TS--------KEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 512 ~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~-~~--------~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~ 577 (1086)
.+....++..... +..+.+.| +-...+..+ .+ .+-.++++-+.+.+. ........+. .-.+
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~~~ 165 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EPKS 165 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc----CCcc
Confidence 9888777665443 22222211 111111111 10 000111111111110 0011111111 1356
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE-c-CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 578 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 578 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
+.+++.+.+....- +..+.+|...++...... . ...+...+.+.++||+++++|++..||.|.+|.--.. .
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~ 238 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S 238 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence 77777776655544 456888888775511111 0 1122233789999999999999999999999974321 0
Q ss_pred ccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEE
Q 001396 656 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 735 (1086)
Q Consensus 656 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 735 (1086)
..... .++--| |...|.+++
T Consensus 239 ~~~~t-----------------------------------------~t~lHW-------------------H~~~V~~L~ 258 (792)
T KOG1963|consen 239 DDSET-----------------------------------------CTLLHW-------------------HHDEVNSLS 258 (792)
T ss_pred ccccc-----------------------------------------ceEEEe-------------------cccccceeE
Confidence 00000 111122 667899999
Q ss_pred EecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001396 736 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 815 (1086)
Q Consensus 736 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 815 (1086)
|+++|.+|++|+..|.+.+|.+.++.. .. ++ .-.++|..+.+|||+.+.+...
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence 999999999999999999987655421 11 11 1577899999999999887775
Q ss_pred -CCeEEEEEccCceEEEEEcCC-----------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-----
Q 001396 816 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----- 878 (1086)
Q Consensus 816 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~----- 878 (1086)
|+.|.+....+.....++.+. .+-.+.++++| .-+.++-.+..|.|.+||+.+.+.+..+..
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 899999888766655554432 23357788999 677888888999999999998776655531
Q ss_pred ------ccCCeEEEEEeCCCCEEEEEeC--------CC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC
Q 001396 879 ------HSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 879 ------h~~~v~~l~~spdg~~l~s~s~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 942 (1086)
+.-.++.++.+-.|.+++|.-. || .+++|-...........-.....|.. ..+..+.+++..
T Consensus 391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r 468 (792)
T KOG1963|consen 391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR 468 (792)
T ss_pred cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence 2235788888889999998632 33 47889877644332221122222222 123333334433
Q ss_pred C-EEEE-EeCCeEEEEEcCCccceec---------cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC-Cceeeee
Q 001396 943 T-RFLL-VHETHLAIYEAEELTCLKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI 1010 (1086)
Q Consensus 943 ~-~l~~-~~d~~i~vwd~~~~~~~~~---------~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~-~~~~~~~ 1010 (1086)
. ..++ +.||.+++|-....+-+.. .-.-|..++++++||.||..|+ ++.|++|.+||..+ .++.+..
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTE 547 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccc
Confidence 3 5555 6999999999843322211 1112688999999999997666 55788999999999 5555554
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCC
Q 001396 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1061 (1086)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~ 1061 (1086)
....+.... . ...+-.+ ....++....+.+.+|++......|
T Consensus 548 ~~~~~~~~~-----~--~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 548 GSRNWPIAE-----L--LFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cccccchHh-----H--hhhcccc--cccceeeccCceEehHhhhhhheec
Confidence 421111110 0 0111112 2345556677899999999888888
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=6e-24 Score=226.10 Aligned_cols=278 Identities=15% Similarity=0.209 Sum_probs=232.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeE-EEecCCCCcEEEEEEeCCCcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+.||...|..+++.++ ..+++++.||++++|+-..++-+. ...+.+|.+-|.. +++.+..+. .+++|+.|.+|.+|
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEEEE
Confidence 8899999999998754 488999999999999987765443 2356788887777 888763332 69999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
...+..++..+.+|...|.++... .++ .+++||.|.++++| ..++....+.+|...|.++++-|++ .+++|+.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~--~~~-~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa- 159 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIG--EDG-TLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSA- 159 (745)
T ss_pred ecCCCCchhhhhccccceeeeecC--CcC-ceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccC-
Confidence 999999999999999999999863 343 49999999999999 5556666799999999999999988 6677765
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|..|++|.- ++.+++|.+|. +.|+.+++-+++ .+++++.||.|+.|++ +|+.+..+.+| ...++++..
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~ 227 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISM 227 (745)
T ss_pred ---cceeeeccC--Cchhhhhccch---hheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEe
Confidence 778999985 88899999988 999999999874 6899999999999999 77888777655 456899998
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
..++..+++++.|++++||+.. .+.+.+.-+...++++.+-++ .-+++|++||.|
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N-----------------------gDIvvg~SDG~V 282 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN-----------------------GDIVVGGSDGRV 282 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC-----------------------CCEEEeccCceE
Confidence 8888999999999999999988 677777777777887776532 237789999999
Q ss_pred ceeeee
Q 001396 705 EVEKPL 710 (1086)
Q Consensus 705 ~vw~~~ 710 (1086)
|+|...
T Consensus 283 rVfT~~ 288 (745)
T KOG0301|consen 283 RVFTVD 288 (745)
T ss_pred EEEEec
Confidence 999865
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=200.90 Aligned_cols=319 Identities=11% Similarity=0.147 Sum_probs=239.4
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcc
Q 001396 614 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 693 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~ 693 (1086)
++...|..++.......+.+++.|.+.+||.++++.++....+|.+.|+++.|+ +.+.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~ 203 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL 203 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence 334568888887777789999999999999999999999999999999999997 5677
Q ss_pred cceeccccCccceeeeeecCCccccccccCC----cccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc
Q 001396 694 PEISVEAENKSEVEKPLFARPSECQSLLLPS----KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 769 (1086)
Q Consensus 694 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 769 (1086)
++++++.|++..+|..... ...|. ..|...- .+.-+....... ++..
T Consensus 204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~hSsEe-E~e~sDe~~~d~--------------------d~~~- 254 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDHSSEE-EEEHSDEHNRDT--------------------DSSE- 254 (481)
T ss_pred eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCCCchh-hhhccccccccc--------------------cccc-
Confidence 8889999999999985421 11111 1111000 000000000000 0000
Q ss_pred cccCCceecCCCCCce--eeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEc
Q 001396 770 TKVPPRLYQPRHGPQF--MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN 846 (1086)
Q Consensus 770 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 846 (1086)
-..|..+ ....++ +|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++-+
T Consensus 255 ---------~sD~~tiRvPl~~lt--gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 255 ---------KSDGHTIRVPLMRLT--GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred ---------ccCCceeeeeeeeee--ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC
Confidence 0111111 112233 4999999999999999999999 8999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCC
Q 001396 847 PHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 925 (1086)
Q Consensus 847 ~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 925 (1086)
| ..+++++.+.|.+.++||+... ..+..|.||.+.|+++.|.-| ..+++++.|.+|+|||+..... .+.....
T Consensus 324 p-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt 397 (481)
T KOG0300|consen 324 P-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT 397 (481)
T ss_pred C-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec
Confidence 9 8999999999999999999854 467889999999999999976 4689999999999999987432 2222222
Q ss_pred CccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCcccee---ccccCCccCEEEEEEeCCC--CEEEEEECCCcEEEE
Q 001396 926 VMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIH 999 (1086)
Q Consensus 926 ~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~s~~~Dg~v~vW 999 (1086)
. .++..++.+..+..+|.- .+..|++||+......+ .-..+|..-|++++|+.+- .-|+++|.|..+.-|
T Consensus 398 d----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 398 D----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred C----CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 2 258889999999999995 45679999997544322 2246899999999999765 458999999999999
Q ss_pred EcCCC
Q 001396 1000 EASNL 1004 (1086)
Q Consensus 1000 d~~~~ 1004 (1086)
++...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 98653
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=5.2e-24 Score=217.14 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=230.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.|.+-|.++.+|...++ +.+|+. |.|+|||+....-.. + ....-.....+.|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--P------------vsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--P------------VSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--c------------cccccccCcccceeeeEecCCCceE
Confidence 67778999999999986 888877 899999996542111 0 0000012245789999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.+.+.||
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987542 22223444444677899999999 88999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
.+ +.||..|.+|+-|++||.||++.+....... ....|.++.++|.+.+++.|-. ++.+.+...... ....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp-~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP-EKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecCCc-cceee
Confidence 98 5688999999999999999999877665443 2347899999999999999986 555766664433 23334
Q ss_pred ecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 566 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
..|. ..|.++.|.+.|+++++.+.|+.+..|.+.-|..+...... ..|.++.+|.|.+++++|+.|....+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4444 89999999999999999999999999999988877766533 45899999999999999999998888864
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.7e-20 Score=203.23 Aligned_cols=277 Identities=13% Similarity=0.171 Sum_probs=232.1
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
..|...-+.++|.|+|.+|.+++.||.|++|+.... +... .+..+...|.+++.. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 368888999999999999999999999999998876 3333 233377778877764 44 699999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
...+..-..+....-+++.+++ +.+|.+++.||.|-.|++-+.........+.+|.++|.++.|+|++++||+.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9988876666667788999999 557889999999999999999999999999999999999999999999999876
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccc-----CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
+|.|++||++++.+..++.+-... ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 788999999999888777654311 2346778999999999999999999999999999999887665555588
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
.+.|+|+|++||+++.+|.|.|||.++.. .......|.+++|.|+...+..-...+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeecc
Confidence 99999999999999999999999999721 144556788999998877665433333
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=214.46 Aligned_cols=266 Identities=15% Similarity=0.215 Sum_probs=213.3
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-C
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 402 (1086)
...|.++|+.+.+-|....++|+++..+.|.|||..+-.-.... .....+...+.||+..=..++|++. .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~~~~ 190 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNRQQE 190 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccccccc
Confidence 35788999999999999989999999999999998764332210 0011223348899988888999985 4
Q ss_pred CEEEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC--CCceeEEee
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE 476 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~--~~~~~~~~~ 476 (1086)
-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccc
Confidence 5788999999999999976543 5556678899999999999998877 79999999999999999 566678889
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
+|.++|++++|+|.. +..||+||.|++|++||+++... ...+..|...|..+.|+|+...+++.+. .++.+.+||
T Consensus 270 ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWD 345 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWD 345 (422)
T ss_pred ccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEe
Confidence 999999999999874 67999999999999999998665 5688999999999999997765554432 288899999
Q ss_pred CCCCeee-----------eEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCC
Q 001396 556 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 603 (1086)
Q Consensus 556 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 603 (1086)
+..-... ..+-.|.+|...|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8743221 122334445599999999999887665 78999999999863
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.1e-23 Score=207.68 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=235.1
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC-EEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 406 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la 406 (1086)
.++|++|.|+|.-. +|.+++.|++++||.+....-... +...+ -..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------qS~~l--~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------QSIHL--EKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------eeeee--ccCccceeeecCCCceEEE
Confidence 35899999999987 799999999999999865432221 11112 347999999999999 889
Q ss_pred EEeCCCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
+++....++.||+.+.+..+. ..+.++. ..+.....+++++ +|+..|..|.|.+....|++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~-~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKL-KPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccccc-cCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 999999999999999875442 2344554 3577888999999 89999999999999999999999987 67889999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC-ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC------
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 558 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------ 558 (1086)
+|+ .+++.|++++.+|.|.+||++...+...+...++ .-+++|.+++|.++|+|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 995 6789999999999999999999988887766554 4578899999999999986 77899999653
Q ss_pred CeeeeEEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEE
Q 001396 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
.+++..+.... ..|+++.|+++.+.|+.+| .+..+++-.+.+......++.. .....|+|++|+|.+.+||+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 45555555555 7899999999999988877 5678999998887766666533 3345789999999999999999
Q ss_pred CCCcEEEEECC
Q 001396 636 NENRIKILETP 646 (1086)
Q Consensus 636 ~dg~i~iw~~~ 646 (1086)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999864
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.3e-23 Score=193.68 Aligned_cols=254 Identities=16% Similarity=0.214 Sum_probs=205.3
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--C
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 401 (1086)
-.+|.+-|..+...--|++ |||++.|++|+|+.+..+..... ...|.||+++|..++|-. -
T Consensus 7 dt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccccc
Confidence 3589999999999999996 99999999999999987664211 112899999999999976 8
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-c--eeEEeecC
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH 478 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h 478 (1086)
|.+||+++.||.|.||.-++|+ ..+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . ..+....|
T Consensus 70 G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 9999999999999999999884 555557789999999999999988889999999999999987654 2 23445679
Q ss_pred CcceEEEeecccCC-c-----------cEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecCC----CEEEE
Q 001396 479 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS 540 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~-~-----------~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~~ 540 (1086)
.-.|++++|.|..- | +.|++|+.|..|++|+.++..- ...+..|...|+.++|.|.- .+|++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 99999999987522 1 5799999999999999988632 23478899999999999964 46788
Q ss_pred EeeCCCCceeEEEEeCCCC--eee-eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 541 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++. |+.+.||-.+.. ... ..+.... ..+..+.|+..|+.|+.++.|+.|.+|.-.
T Consensus 229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 876 778999976521 111 1122223 679999999999999999999999999754
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.1e-21 Score=212.50 Aligned_cols=289 Identities=11% Similarity=0.058 Sum_probs=212.9
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE-EEEeCCCEEEEEEecC
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~ 421 (1086)
++++++.|+.|.+||+.+++.+.. +.++ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 688999999999999999887654 3334 346789999999987 5667889999999998
Q ss_pred CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc
Q 001396 422 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 501 (1086)
Q Consensus 422 ~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 501 (1086)
++... .+..+.. +..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 87544 3333333 567899999984 345556789999999999888877753 3346778884 47778888887
Q ss_pred CC-eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----cCCceE
Q 001396 502 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 576 (1086)
Q Consensus 502 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 576 (1086)
++ .+.+||..+......... ......++|+|+++++++++. .++.|++||+.+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789887665443322 234577999999998876542 256799999999988776653210 011235
Q ss_pred EEEEecCCCEEEEE-ECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCcEEEEECCCCCeeeec
Q 001396 577 VVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 654 (1086)
.++|+|++++++++ +.++.+.+||..+++....+... ..+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 68899999986654 55678999999998887665432 247899999999999886 45899999999999888877
Q ss_pred cccccceeeeEEc
Q 001396 655 GVLSDNLRKLSVN 667 (1086)
Q Consensus 655 ~~~~~~v~~~~~~ 667 (1086)
+.. ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 653 333555543
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=194.87 Aligned_cols=300 Identities=15% Similarity=0.194 Sum_probs=224.3
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
..|.++..+|.... ..|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 44666667776432 79999999997 599999999999999988664433 889999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+++||+||+.|++++.|..|.+||+..|.++++. ....+|+.+.|.|-.++..+++-- +..-.+-++..++....
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~L 144 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVL 144 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeec
Confidence 9999999999999999999999999999877643 356789999999988764555443 44455555544322111
Q ss_pred eecCCcceEEE--eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 475 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 475 ~~~h~~~v~~~--~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
-....+..... +-..+..|+++++|...|.+.++|..+.+++..+.... ..|..+.|+..|++++..+. |+.|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 11111111111 11235678899999999999999999999988887766 78999999999999999876 8889
Q ss_pred EEEeCCCC-------ee--eeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 552 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 552 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+.|+++.- ++ .++++..- .+..-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D 298 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD 298 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence 99987621 11 12222111 113446789999999998876 456799999999999999987654 34678
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.|+|-...+++. ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988777777 6799999986643
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=206.74 Aligned_cols=291 Identities=15% Similarity=0.204 Sum_probs=230.4
Q ss_pred EEEEecc-CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCC-CccEEEEEECCCCCEEEEEe-CCCEEEEEEec
Q 001396 344 LLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 420 (1086)
Q Consensus 344 la~gs~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~las~~-~d~~i~iwd~~ 420 (1086)
+.+++.| .++.+||+.+|....+ +++. ...-.++..- .+.|++++. ....+.+|.+.
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~-------------------ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~ 69 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQ-------------------YKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEIL 69 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEE-------------------ecCcccccchhhhhh-chhheeeecccCccccccccC
Confidence 4444545 4599999999987754 2221 0111111111 336777764 34579999998
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 500 (1086)
......+.. --.++|.+++-+|+|. +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.| +.||.+|++||
T Consensus 70 k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTgs 142 (476)
T KOG0646|consen 70 KKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITGS 142 (476)
T ss_pred chhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEecC
Confidence 765444222 3456899999999998 7888889999999999999999999999999999999 56889999999
Q ss_pred cCCeEEEEEcC---------CCceeEEecCCCCceEEEEEecC--CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 501 VDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 501 ~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
.||.|.+|++. +..+...+..|.-+|+.+...+. ..++++++. |.++++||+..|.++.++...
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp- 217 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP- 217 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC-
Confidence 99999999763 33456678889999999988765 457788776 889999999999999888764
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----------------eeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
..+.+++.+|.+..+++|+++|.|.+.++..- ..+..+.+|.+...|+|++++-||.+|++
T Consensus 218 ---~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 218 ---SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ---CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 48999999999999999999999999887532 23344555555558999999999999999
Q ss_pred EECCCcEEEEECCCCCeeeeccccccceeeeEEccC
Q 001396 634 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 669 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~ 669 (1086)
|+.||.+.|||..+.++++++....++|+.+.+.|.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999999999999998888889999988765
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=4.7e-22 Score=189.74 Aligned_cols=320 Identities=13% Similarity=0.187 Sum_probs=234.3
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 403 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 403 (1086)
.-|.+.|+.+.+.+...+++++|+.||.|.+||++....-...-+ +- ...|. .......+|.-.|..+.|-| |.-
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeee--ccccCCccceeeeeeeEEeeecCc
Confidence 467789999999996555699999999999999986542110000 00 00111 11122568999999999999 667
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC-cEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
.+.+++.|.+++|||..+-+... .| .-.+.|.+-++||-.. .-++++|..|-.|++-|+.+|.+.+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 88899999999999999865433 23 3456788888888653 3367888888899999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.++.|+|..+ -.|++|+.||.|++||++.. .+.+++.|...++..
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCccC
Confidence 9999998754 68899999999999998752 112444444444333
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC----CCCCCCceEEEecCCCEEEEEECCC
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
..++....|.+.++.++|+.++.++++++.|..+++|+..+|+....-.++ .....-..+. +.+...++..-.++
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence 333333445589999999999999999999999999999987643322111 0000011122 33444555556678
Q ss_pred cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
.+.++++-++..++.+..|-..+.|.++. |+-+...+++.|+.+..|-..
T Consensus 316 ~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 99999999999999999998888888775 667778899999999999754
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=7.1e-21 Score=208.32 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=201.7
Q ss_pred CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCcEEEEECCCCCeeeeccccccceee
Q 001396 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 663 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 663 (1086)
..+++++.|+.|++||+.+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 4678889999999999999998888875432 5779999999876 456678899999877542221110
Q ss_pred eEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceE
Q 001396 664 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 743 (1086)
Q Consensus 664 ~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 743 (1086)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEE
Q 001396 744 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 821 (1086)
Q Consensus 744 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~i 821 (1086)
....+..++++|+++.++++. ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 000123456777777665543 578999
Q ss_pred EEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEE-e
Q 001396 822 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 899 (1086)
Q Consensus 822 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~-s 899 (1086)
||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988877776653 33468899999 899999888775 577889998877665542 2346789999999988544 4
Q ss_pred CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccceeccccCCccCEEE
Q 001396 900 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 977 (1086)
Q Consensus 900 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 977 (1086)
.++.|++||+.+++............+.. ......++|+|+|+++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999865433211111110100 012456899999998655 456789999999888766433 3457899
Q ss_pred EEEeCCCCEEEEE-ECCCcEEEEEcCCCceeeeec
Q 001396 978 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 978 l~fs~dg~~l~s~-~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
++|+|+|++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999998886
No 134
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.6e-21 Score=203.94 Aligned_cols=456 Identities=13% Similarity=0.133 Sum_probs=292.7
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 516 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 516 (1086)
.|..++|-|||.+++++. +..+.+||...|..+.++++|.+.|++++| +.||+.+++|+.|+.|.+|.-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence 799999999999744443 447999999999999999999999999999 568899999999999999965433222
Q ss_pred EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcE
Q 001396 517 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 596 (1086)
Q Consensus 517 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 596 (1086)
--.|+..|.|+.|+|-...|++|+-+. .-+|........+ .+. ...+.+++|..||++++.|-.+|+|
T Consensus 89 --kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 --KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred --eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 235778999999999999999998532 6678766543322 221 2578999999999999999999999
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEecCC-----CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCC
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 671 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 671 (1086)
.+-+....+....-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99875444444433444556789999999953 46777777777877776632 22211111111222333
Q ss_pred ceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccce
Q 001396 672 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 751 (1086)
Q Consensus 672 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 751 (1086)
-++|.+++.|+.|+.+.+|..+....+ .+ ......|..++..|+++.++.|..||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLG---Tv----g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLG---TV----GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecCeEEe---ec----cccceeEEEEEEccCCceEEEEEccCe
Confidence 378999999999999999874421111 11 114567999999999999999999999
Q ss_pred eEEeeccCCcccc---------------------Cc---------------------ccccccCCceecCCCCCceeeec
Q 001396 752 HLMWRWPRNDLTL---------------------ST---------------------EATTKVPPRLYQPRHGPQFMVND 789 (1086)
Q Consensus 752 i~vw~~~~~~~~~---------------------~~---------------------~~~~~~~~~~~~~~~g~~~~~~~ 789 (1086)
+..|++-....+- .+ ..+....+.+|...++. .....
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mh 365 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMH 365 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccch
Confidence 9999876543200 00 01111223334333332 10000
Q ss_pred CCCCC-CCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEE--cCCCCCEEEEEeCCCeEEEEE
Q 001396 790 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF--NPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 790 ~~~~~-~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~--s~~d~~~lasg~~dg~v~iwd 866 (1086)
++-.. -.....|--.---+..++.+.+..+..+|...-+. +... -.+-|+-+.+ .|.+..-|+.|..+|.|.-.=
T Consensus 366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 00000 00000111111124455556666777777653211 1000 0000111111 121556788899898765443
Q ss_pred cCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEE
Q 001396 867 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 946 (1086)
Q Consensus 867 ~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 946 (1086)
+.+.-++... .....|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+....-++
T Consensus 444 ~dN~~PiLl~-~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT~~E~Ml 510 (1081)
T KOG1538|consen 444 VDNLFPILLL-KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNTQCEDML 510 (1081)
T ss_pred ecCCchhhee-cccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeeccccceE
Confidence 4443333222 2456799999999999999999999999999999763 22332 477899988766555
Q ss_pred E-EeCCeEEE
Q 001396 947 L-VHETHLAI 955 (1086)
Q Consensus 947 ~-~~d~~i~v 955 (1086)
+ +..|.+.|
T Consensus 511 cfT~~g~L~V 520 (1081)
T KOG1538|consen 511 CFTGGGYLNV 520 (1081)
T ss_pred EEecCCceEE
Confidence 5 55566655
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9e-22 Score=190.25 Aligned_cols=268 Identities=15% Similarity=0.104 Sum_probs=210.3
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
.+..|+.+.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46899999999999999999999999999999874332 236899999999998765 89999999999999998
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
+.... +..|..+|.++...+.. ..+++||.|++|++||.+.......+.... .|.++.. .|+.|+.|+. +
T Consensus 85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 87654 44699999999987543 489999999999999998755555544444 6666554 5667777665 6
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCC-------CC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 617 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 617 (1086)
..+.+||+++.......... .-+..++++++-|++.-.++++-||.|.+=.++.. +....+..|.. ..
T Consensus 155 r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 78999999876543322111 11367899999999888999999999988666554 33334444321 23
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
+|++++|+|--..|++|+.||.|.+||..+.+.+..+......|..++|+.++..++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 689999999988999999999999999999999999988888899999975554443
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.2e-22 Score=201.45 Aligned_cols=290 Identities=14% Similarity=0.231 Sum_probs=225.7
Q ss_pred CCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 617 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
..|+++.|+|...++++++.|++++||.++..... .+.++-+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--------~lqS~~l------------------------------ 255 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--------KLQSIHL------------------------------ 255 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--------hheeeee------------------------------
Confidence 46899999999999999999999999988744211 1111111
Q ss_pred eccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCc-eEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 697 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
...+|.+..|.|+|. .+++++....++.||+...+...-
T Consensus 256 ------------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~---------- 295 (514)
T KOG2055|consen 256 ------------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL---------- 295 (514)
T ss_pred ------------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccc----------
Confidence 235688899999999 788888888999998865432110
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEE
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 854 (1086)
.+..|. ....+....+||++++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|.
T Consensus 296 --~~~~g~-----------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~ 360 (514)
T KOG2055|consen 296 --KPPYGV-----------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELL 360 (514)
T ss_pred --cCCCCc-----------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEE
Confidence 000111 234577889999999999988 6999999999999998887 668899999999 888888
Q ss_pred EEeCCCeEEEEEcCCceeEEEeccccC-CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeeeeeeccCCCccCCCC
Q 001396 855 IGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 855 sg~~dg~v~iwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 932 (1086)
+.+.+|.|.+||+....++..+....+ .-++++.|++|.+||+|+..|.|.|||.++.-. ...+++....... ..
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~ 437 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TA 437 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---ee
Confidence 888899999999999999888874322 235688889999999999999999999765221 1123344433333 37
Q ss_pred ceEEEEecCCCEEEEE---eCCeEEEEEcCCccceeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 933 ETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~---~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
|+++.|++|+..||.+ ..+.+++--+.+......|.... -+.|++++|||.|.++|.|..+|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999973 56789999999888877765443 6789999999999999999999999999874
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3e-22 Score=193.03 Aligned_cols=282 Identities=15% Similarity=0.223 Sum_probs=215.7
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 6799999999999999999999999999976444 5789999999999999999 8999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC----ceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
+.+. ...+|+.+.|+|......+++--... -.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987766665544333 34444444322221111111 1223468999999999976 7
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-------eeE--EEEcCCCCCCCC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 619 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 619 (1086)
|.+.++|..+-+++..++-.. ...|..+.++..|++++.-+.|..||.|++..- ++. +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 889999999999988887644 367899999999999999999999999998631 111 111100011234
Q ss_pred ceEEEecCCCEEEEEEC-CCcEEEEECCCCCeeeeccccc-cceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 620 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 68999999999988765 4679999999999999999887 55666777765433 233
Q ss_pred ccccCccceeeee
Q 001396 698 VEAENKSEVEKPL 710 (1086)
Q Consensus 698 ~~~d~~i~vw~~~ 710 (1086)
. ..|.+.+|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 3 55889999854
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=204.28 Aligned_cols=255 Identities=15% Similarity=0.158 Sum_probs=206.6
Q ss_pred ceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEec
Q 001396 341 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 420 (1086)
Q Consensus 341 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 420 (1086)
.|++++-.....+.+|.+........ ..++ .++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q----------------~~v~---Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ----------------YIVL---PGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhhh----------------hccc---ccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 45555544556788888866554431 1112 3689999999999999999999999999999
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC---------CCceeEEeecCCcceEEEeecccC
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|++. +-++++.|..|.-+|+++.+.+.+
T Consensus 112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 999877 5679999999999999999 89999999999999763 346788999999999999987765
Q ss_pred CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-------------
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------------- 558 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------------- 558 (1086)
-..+|+++|.|.++++||+..+.....+.. ...+.+++.+|.++.++.|+. +|.|.+.++..
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence 667999999999999999999877666543 447899999999999999986 66777766542
Q ss_pred ---CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 559 ---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 559 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+..+..+.||.. ...|+|++.+-||..|++|+.||.++|||+.+.++++++... ..+|+.+.+.|-
T Consensus 262 ~~~~t~~~~~~Gh~~-~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 262 HEENTQINVLVGHEN-ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred ccccceeeeeccccC-CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 233555667661 139999999999999999999999999999999999888732 235788888663
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=4.5e-22 Score=203.14 Aligned_cols=283 Identities=12% Similarity=0.153 Sum_probs=232.5
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC---eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.|+.-|..+++|...+++++|+ .+.|.+||+... .++..+.... ....|+++.+.|||+.|++|++-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceee
Confidence 4666788899999999999987 778999998743 2333333321 246799999999999999999999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccc
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
|||+....+....+.......+++++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.|+.++
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis---------- 560 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---------- 560 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec----------
Confidence 9999877665544444444568899999999999999999999999999999999999999999999986
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
+||..|.+|+-|+++|-||+......+... ....|.++.++|++.+++++-.++.+.|...
T Consensus 561 ------------~dGtklWTGGlDntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 561 ------------KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ------------CCCceeecCCCccceeehhhhhhhhhhhhh-------hhhhheecccCCCccceeeecccCcEEEEec
Confidence 789999999999999999987544333322 3467899999999999999999988877553
Q ss_pred cCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCC
Q 001396 758 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 836 (1086)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 836 (1086)
... ..+...+ |+..|.++.|++-|+++++.+ |+-+-.|.+.-|..+...+ .
T Consensus 622 skp-----------------------~kyqlhl----heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E 673 (705)
T KOG0639|consen 622 SKP-----------------------EKYQLHL----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E 673 (705)
T ss_pred CCc-----------------------cceeecc----cccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-c
Confidence 322 1222222 899999999999999999987 8889999999888877766 6
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNA 867 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 867 (1086)
...|.++.+|. |+++|++|+.|+...||.+
T Consensus 674 ~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 67899999999 8999999999998888865
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2e-21 Score=197.21 Aligned_cols=304 Identities=17% Similarity=0.202 Sum_probs=228.8
Q ss_pred eeeeeccCCCCceEeeecCCCc-eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+...-|.+.|++++|+|... .++|+|...|+|-+||+.+.+......+ ++..|..+|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEe
Confidence 3445567788999999999876 7899999999999999975444433222 27889999999999
Q ss_pred CC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEee
Q 001396 399 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFE 476 (1086)
Q Consensus 399 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~-~~~~~ 476 (1086)
+| +-..+.+.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.+..=|.+.+||.+++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 99 456888999999999999998642 22223333455678888998888 677777777999999998665 56677
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee----EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
-|...|++++++|-. ..+|+++|.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+
T Consensus 320 lh~kKI~sv~~NP~~-p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPVC-PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCCC-chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 799999999998874 479999999999999999875443 345567889999999998888888765 77899
Q ss_pred EEeCC----CCeeeeEEecccccCC--ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 553 EWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 553 iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
+||.. .-.+...+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+.......-..-..|+|
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 99983 3333333332221112 23456799999999999999999999999999888765443322223467999
Q ss_pred CCC-EEEEEECCCcEEEEECC
Q 001396 627 NGT-LLAVIANENRIKILETP 646 (1086)
Q Consensus 627 ~~~-~l~~~~~dg~i~iw~~~ 646 (1086)
-+. +++-++..|.|+||..+
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 777 44445557888888654
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=3.7e-20 Score=195.28 Aligned_cols=273 Identities=12% Similarity=0.128 Sum_probs=204.3
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|..++|-|||..|++.++ ..+.|||++.|.++.. +++|.+.|.|+|||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 7999999999987555443 6899999999998876 889999999999999999999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
.|..|.+|+-.-...++ ..|.+.|.|+.|+|-.. .|+|++- ...-+|..+.....+ . .....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHh-h-hhheeEEEeee--
Confidence 99999999976543333 26999999999999998 6888874 357789865443321 1 12334555555
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecC---CCCceEEEEEecCCC-----EEEEEeeCCCCceeEEEEeCCCCee
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
..||++++.|-.+|+|.+-+-. +++...+.. .+.+|.+++|+|... .+++... ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7799999999999999987543 344443333 556899999999643 2333322 223444433 2444
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
+..-+... ....|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++... ...|+.++..|+++.++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence 43333222 45678899999999999999999999974 56666666543 34689999999999999999999999
Q ss_pred EEECCC
Q 001396 642 ILETPE 647 (1086)
Q Consensus 642 iw~~~~ 647 (1086)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998763
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.5e-21 Score=203.92 Aligned_cols=323 Identities=12% Similarity=0.168 Sum_probs=248.0
Q ss_pred CccCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 311 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 311 ~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.....+|..|-..+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+ .
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d 441 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------D 441 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------c
Confidence 3455678889999999999999999999998 599999999999999999999986442 2
Q ss_pred ccEEEEEECCCCC--EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE----eCCCcEEEE
Q 001396 391 VSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIKVW 464 (1086)
Q Consensus 391 ~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~----~~d~~i~iw 464 (1086)
+.|.|++|+|.+. .||++-... +.|-+..-|..+.. +.+ .. .|+++ ..|+.+..|
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t-----------~e--ll~~~~~~~~p~~~~~~W 502 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPT-----------KE--LLASAPNESEPDAAVVTW 502 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cch-----------hh--hhhcCCCccCCcccceee
Confidence 5899999999765 455554444 66666555532221 000 00 12221 235677888
Q ss_pred eCCCC----ceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 465 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 465 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
.-... .-++..-.|...|..+.|+. .|.+|++...+ ..|.|.++.....+..+....+.+.++.|+|...+
T Consensus 503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence 64421 11344456999999999965 56799987654 56889999888777777778889999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGL 616 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 616 (1086)
|++++ ...|++||+...++++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|.
T Consensus 581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~-- 650 (733)
T KOG0650|consen 581 LFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE-- 650 (733)
T ss_pred EEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--
Confidence 99887 5579999999988888877665 78999999999999999999999999999854 5666676664
Q ss_pred CCCceEEEecCCCEEEEEECCCcEEEEECC------CC---Ceeeeccccccc----eeeeEEccCCCceeccccCCeee
Q 001396 617 PENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVS 683 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----v~~~~~~p~~~~~~~~~~~~~~~ 683 (1086)
..+.+|+|++.-.++++|+.||++.|+... .+ .++..+++|... |....|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH---------------- 714 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH---------------- 714 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc----------------
Confidence 458999999999999999999999998533 11 345667777665 5555665
Q ss_pred ecCCCCCCcccceeccccCcccee
Q 001396 684 VNEDPKEDVKPEISVEAENKSEVE 707 (1086)
Q Consensus 684 ~~~~~s~d~~~l~s~~~d~~i~vw 707 (1086)
|...++++++.||+|++|
T Consensus 715 ------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 ------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------CCCceEEecCCCceEEee
Confidence 567789999999999998
No 143
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.4e-21 Score=199.20 Aligned_cols=253 Identities=19% Similarity=0.326 Sum_probs=202.6
Q ss_pred ecCCCccEEEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-------ccceEeccccccEeEEEecCCCCcEEEEEEeC
Q 001396 386 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
...|.+.|..+.+-|.. ..+|+.+..+.|.|||...-... +....+.+|...-..++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 44689999999999965 45666788889999998754322 233368899998888999998776 7999999
Q ss_pred CCcEEEEeCCCCc-------eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC--CCceeEEecCCCCceEE
Q 001396 458 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 528 (1086)
Q Consensus 458 d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~i~~ 528 (1086)
|++|++||+.... +...+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|.+.+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987533 3467889999999999998744 689999999999999999 55666778889999999
Q ss_pred EEEecCCC-EEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCe
Q 001396 529 MAYSANGR-RLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 529 ~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 605 (1086)
++|+|-+. .||+++. |++|.+||+++- +++.++.+|. ..|..+.|+|... .|++++.|+.+.|||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 99999655 5556654 778999999864 4667778877 9999999999865 55668899999999997422
Q ss_pred eE------------EEEcCCCCCCCCceEEEecCCC-EEEEEECCCcEEEEECCC
Q 001396 606 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 647 (1086)
Q Consensus 606 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 647 (1086)
.. ..+...++...|..+.|+|+.. .+++++.|+.+.||.+..
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22 2244456677799999999765 567788999999999874
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=6.3e-21 Score=182.09 Aligned_cols=304 Identities=14% Similarity=0.175 Sum_probs=219.0
Q ss_pred cccceEEEEEec-CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee
Q 001396 727 KANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 805 (1086)
Q Consensus 727 ~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s 805 (1086)
|.+.|.++.+.+ .|+++++|+.||.+.+||+............. ...|....+ ...+|...|..+.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~~-h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAKQ-HENGHKYAISSAIWY 110 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeecccc-CCccceeeeeeeEEe
Confidence 788999999876 58999999999999999997654211111110 011111111 122588899999988
Q ss_pred c-CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCC--CCEEEEEeCCCeEEEEEcCCceeEEEeccccC
Q 001396 806 K-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD--NNVIAIGMDDSTILIYNARSSEVISKLEGHSK 881 (1086)
Q Consensus 806 ~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d--~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 881 (1086)
| |...+.+++ |.+++|||..+.+....|. -.+.|.+-++||-. ..++|+|..|-.|++.|+.+|.....+.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 8 444555555 8999999999999888886 55677777777621 34889999999999999999999999999999
Q ss_pred CeEEEEEeCCCCE-EEEEeCCCcEEEEECCCCc--eee-----eeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCe
Q 001396 882 RVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWG--IQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 952 (1086)
Q Consensus 882 ~v~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 952 (1086)
.|.++.|||...+ |++|+.||.|++||+.... ... .+..+..+....+.+.+..++|+.||.++++ +.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 9999999998776 7899999999999997631 100 0111122222333468999999999999998 89999
Q ss_pred EEEEEcCCccceecccc--CCc---cCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccc
Q 001396 953 LAIYEAEELTCLKQWFP--ISS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1027 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~--~h~---~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1086)
+++|+..+|+....-+. .|+ +.-.-+. +.+...++---.|+.+.++++-.|..+.++... --..
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h----------~k~i 338 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH----------LKRI 338 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc----------ccee
Confidence 99999998874332111 121 1111123 445555555556789999999999999888721 1234
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1028 HAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1028 ~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
.|.++.| +-+...+|+.|+.|..|-.
T Consensus 339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 339 NCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEeecC-chhhhhccccCCccccccc
Confidence 5777888 6788999999999999976
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.2e-21 Score=204.72 Aligned_cols=324 Identities=13% Similarity=0.169 Sum_probs=242.9
Q ss_pred eeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 383 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 383 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
..++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.|++.. ...+.|.|++|+|.+..-+|+.+- ...+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceE
Confidence 3458899999999999999999999999999999999999998843 234579999999999864455444 44477
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE----EcCCeEEEEEcCCCc----eeEEecCCCCceEEEEEecC
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d 534 (1086)
|-+..-|..+..-.. ...|+++ ..++.+..|.-.... .+.....+...|..+.|+..
T Consensus 468 ivnp~~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 776555532211100 0111111 234567778654222 23455667889999999999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
|.||++...++ +...|.|.++..+.....|.... +.|.++.|+|...++++++. ..|+|||+....++..+...
T Consensus 533 GDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg- 606 (733)
T KOG0650|consen 533 GDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG- 606 (733)
T ss_pred CceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-
Confidence 99999987644 36789999998777666665555 78999999999999998876 57999999987777666533
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcc
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 693 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~ 693 (1086)
...+..++.+|.|..|++++.|+.+..+|+.-. ++.+.++-|...++++++++ .-.
T Consensus 607 -~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~----------------------ryP 663 (733)
T KOG0650|consen 607 -SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK----------------------RYP 663 (733)
T ss_pred -CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc----------------------ccc
Confidence 446889999999999999999999999999855 67888999999999999974 345
Q ss_pred cceeccccCccceeeeeecCCccccccccCC---cccccc----eEEEEEecCCceEEEeeccceeEEe
Q 001396 694 PEISVEAENKSEVEKPLFARPSECQSLLLPS---KVKANK----ISRLTYNNGGQAIFALASNGVHLMW 755 (1086)
Q Consensus 694 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~~~----i~~l~~s~~g~~l~~~~~dg~i~vw 755 (1086)
++++++.|+++.|+.-.........++..|. .+|... |..+.|.|....+++++.||+|++|
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6788888899888874433222222222222 234433 8888999999999999999999997
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.4e-23 Score=219.63 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=213.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+- .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44688999999987789999999999999999987654443 5889999999999999988 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999966 5678999999999999999999999999999999999999999999999875
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
+..+.+||...|+....|..|. ..+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999988 89999999999888888999999999999998888777654 4568999999
Q ss_pred cCCCEEEEEECC
Q 001396 626 KNGTLLAVIANE 637 (1086)
Q Consensus 626 ~~~~~l~~~~~d 637 (1086)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999998887654
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.3e-21 Score=207.92 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=197.0
Q ss_pred EEEEec-CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC-CE
Q 001396 733 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY 810 (1086)
Q Consensus 733 ~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg-~~ 810 (1086)
.+.|.. +.++|++++..|.|.+||+..... .+.+.. +. +|...+.++.|++-. .+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNI 148 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccE
Confidence 344442 456788888899999999875210 000111 11 489999999999865 56
Q ss_pred EEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccccCCeEEEEE
Q 001396 811 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF 888 (1086)
Q Consensus 811 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~v~~l~~ 888 (1086)
|++|+ ||.|++||+...+...++.+....|+.++|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 67777 8999999999999999999988999999999988999999999999999999864 567888999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE----EeCCeEEEEEcCCccce
Q 001396 889 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL 964 (1086)
Q Consensus 889 spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~~d~~i~vwd~~~~~~~ 964 (1086)
+|++.+|||||+|++|+|||+.+.+.....++++. .++..++|-|+..+.++ +.|..|+|||+...-..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999999999999999998776665555554 35899999999887654 36788999999988877
Q ss_pred eccccCCccCEEEEEEeC-CCCEEEEEECCCcEEEEEcCCC
Q 001396 965 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 965 ~~~~~~h~~~v~~l~fs~-dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
...+..|...++.++|-. |-..+.+++.||+|..-.++.+
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777888999999999966 5567899999999876555544
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.7e-22 Score=213.29 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=214.6
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.+..|+..|.|+..-..++ ++++|+.|..+.+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 34467888999999877776 799999999999999866544433 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
..+|++|+.+|+|++||++.++.++ ++.+|...+..+.|+|-+. +.++|+.|+.+++||.+...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999988777 6889999999999999999 7899999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
|..+.| .++|.++++++.|.++++||+..++....|..|...+.++.|+|..-+++.|+. ++.+++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 558899999999999999999999999999999999999999999999998886 77899999999888
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777665 8899999999999888876543
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=6e-20 Score=183.96 Aligned_cols=309 Identities=15% Similarity=0.169 Sum_probs=220.5
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
.++.|+ +|..+.|.+++...+|+|+.|..|+||.++.+..-... ....-...|..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 345665 99999999988746999999999999999876543210 0011123488999999999999999
Q ss_pred CEEEEEeCCCEEEEEEec--------C-----CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 403 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
.+||+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|+++++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999887 3 122223446778999999999999999 8999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec----------C---------CC----Cce
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------A---------PG----LGC 526 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------~---------~~----~~i 526 (1086)
..+..+..|...|..++|.| -++++++-+.|...+.+.+.......... . |. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999955 45788888888876666654433222110 0 00 123
Q ss_pred EEEEEecCCCEEEEEeeCCCC-----ceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecC-----------------
Q 001396 527 TRMAYSANGRRLFSCGTSKEG-----ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------------- 583 (1086)
Q Consensus 527 ~~~~~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------------- 583 (1086)
..++|+|||.++++....-+. .+..++++-.. .++...+.+.. .....+.|+|-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 568899999999875431111 22345554331 22233333333 44555555541
Q ss_pred CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe
Q 001396 584 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 650 (1086)
Q Consensus 584 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 650 (1086)
-+.+++......|++||.++-.++.....- +...++.++|++||..+++.+.||-..+...+..+.
T Consensus 311 yrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 123333344567999999998887766432 234689999999999999999999988877765533
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=196.99 Aligned_cols=293 Identities=18% Similarity=0.212 Sum_probs=209.6
Q ss_pred eeec--CCCceEEEEEeccCcEEEEecCCCcee-eeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC
Q 001396 334 MDFH--PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 334 ~~~s--pdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 410 (1086)
+.|+ |+.+.+||.+..||.|.++|...-... ....++ ....|.+.|..++|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEccC
Confidence 4454 344568999999999999998664322 111111 14579999999999997788999999
Q ss_pred CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--------------------
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------------------- 470 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-------------------- 470 (1086)
|.++++||++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||+.-..
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998876643 46799999999999999887 89999999999999985221
Q ss_pred e-------eEEeecCCcceEE-EeecccCCccEEEEEEc-CCeEEEEEcCCCceeEE--------ecCC---CCceEEEE
Q 001396 471 R-------TYSFEGHGAPVYS-LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMA 530 (1086)
Q Consensus 471 ~-------~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~ 530 (1086)
. +.....+...|.+ +......|...|++++. |+.|+|||++....... +..+ ...+.++.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI 278 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence 0 1112234444443 11111345668999887 99999999987654332 2222 23577888
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEE
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 608 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 608 (1086)
....|.+|++... |+.|+.|++.+- .++..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-.
T Consensus 279 lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 279 LDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred ecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 8888888877665 778999998753 3445555544211222 23478999999999999999999998765433
Q ss_pred EEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEEECCCC
Q 001396 609 TIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.+. .++...|.+++|.|. -.-++++++|..+++|++..+
T Consensus 354 ~~l-~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 ALL-LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh-hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 222 133456899999883 334666799999999999655
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.2e-19 Score=176.44 Aligned_cols=293 Identities=15% Similarity=0.263 Sum_probs=213.9
Q ss_pred eccCCCCceEeeecC----CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 324 LIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 324 l~~h~~~V~~~~~sp----dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+|+.+|..++|.+ +...++|+.+. ..+.||......-+. .++...-..|...-..++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWS 98 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEE
Confidence 458888999999984 33335565554 678888876543221 12222234588888999998
Q ss_pred CC----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 400 PD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 400 pd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
-| ..+||+|+.-|.|+|.|+.++++.+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++||+++..++..|
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEe
Confidence 65 4479999999999999999998776 57899999999999999877 7999999999999999999999887
Q ss_pred ---ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE------Ee----------------------cCCCC
Q 001396 476 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAPGL 524 (1086)
Q Consensus 476 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~----------------------~~~~~ 524 (1086)
.+|.+.|.++.|+. +|.++++++.|..|++|++...+... .+ ..|..
T Consensus 175 GG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn 252 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN 252 (385)
T ss_pred cccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc
Confidence 56999999999955 66799999999999999997432111 00 11222
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeC-CCCee-------------eeEEecccccCCceEEE--EEecCCCEEE
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQIL 588 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~~--~~~~~~~~l~ 588 (1086)
.|.|+.|- |+++++-+. ++.|..|.. +-++. +..+.-. ...|.-+ +|.|-++.|+
T Consensus 253 yVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 253 YVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred hHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHHHh
Confidence 22233222 456666554 567999987 22211 1222222 2445444 4566688999
Q ss_pred EEECCCcEEEEEcCCCeeE--EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 589 AAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 589 ~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.|...|.|++||++..++. .++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999976652 344444444678999999999999999999999999854
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.4e-19 Score=172.98 Aligned_cols=268 Identities=13% Similarity=0.188 Sum_probs=195.7
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 402 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 402 (1086)
.+|.+-|.|+.|.+-|++ +|+++.|++|+|||.....-....+ .....|.+.|..+.|-+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence 489999999999999998 8999999999999975544332211 11557999999999976 59
Q ss_pred CEEEEEeCCCEEEEEEecCC------CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc------
Q 001396 403 SLLGVAYSKHIVQLYAYHGG------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------ 470 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~------ 470 (1086)
+.+|+++.|+++.||.-... ..-....++..-...|+++.|.|.-..+.+++++.||.+|||+.-..-
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999986311 112223355667789999999998877799999999999999865432
Q ss_pred eeEEee-------cCCcceEEEeecccCCc-cEEEEEEcC-----CeEEEEEcCCCce----eEEecCCCCceEEEEEec
Q 001396 471 RTYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 471 ~~~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~s~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~ 533 (1086)
..+.++ .+..+..|+.|+++.-. ++|+.|+.+ +.+.||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 223333 35667788888765433 456666655 4889998766553 235678888999999999
Q ss_pred CC----CEEEEEeeCCCCceeEEEEeCCCCe-----------------eeeEEecccccCCceEEEEEecCCCEEEEEEC
Q 001396 534 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 534 d~----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.|.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 35666654 55 9999887311 12333334445599999999999999999999
Q ss_pred CCcEEEEEcCC---CeeEEEEcCC
Q 001396 593 DHVIKIWDMNK---VQLLTTIDAG 613 (1086)
Q Consensus 593 dg~i~iwd~~~---~~~~~~~~~~ 613 (1086)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997653 2344444443
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.7e-19 Score=172.64 Aligned_cols=256 Identities=13% Similarity=0.179 Sum_probs=190.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC-ccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~ 462 (1086)
-.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 56899999999999999999999999999999964432 34444567899999999999654 56 899999999999
Q ss_pred EEeCCC------C---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE------Eec-------
Q 001396 463 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 520 (1086)
Q Consensus 463 iwd~~~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~~------- 520 (1086)
||.-.. | ....++......|+.++|.|..-|-.+++++.||++|||+....-... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123566677889999999999999999999999999999765433222 111
Q ss_pred CCCCceEEEEEecC---CCEEEEEeeCC-CCceeEEEEeCCCC--e--eeeEEecccccCCceEEEEEecCC----CEEE
Q 001396 521 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 588 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d---~~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 588 (1086)
.+..+..|+.|+|. ..+|+.++.+. ...+.++||....+ + .+.++.++. .+|+.++|.|+- ..|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23346788899873 45677776431 12235667765432 2 344455555 999999999973 4678
Q ss_pred EEECCCcEEEEEcCCCe-----------------eEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 589 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 589 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
+++.|| |+||.+.... .+..+. ..++...|..+.|+-.|..|++.+.||.|++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999 9999987311 111221 234456799999999999999999999999998653
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3e-20 Score=188.25 Aligned_cols=243 Identities=15% Similarity=0.176 Sum_probs=188.5
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceE------------------eccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLE------------------IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
|.|+|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|...-+. +|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 68999999999999999863322221111 2379999999999988777 8999999999999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|-.++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999999999999999999976 5679999999999999999853333222223457888999998877776664
Q ss_pred CCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
.+|+|+-+|++.. +++.+++.|. .+|.++++++..+ .+++++.|+.|++|++..-.........-......|
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 2789999999865 8899999988 8999999998754 566799999999999875443222211111222456
Q ss_pred EEEecCC-CEEEEEECCCcEEEEECCCCCeee
Q 001396 622 ICFNKNG-TLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 622 v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
.++.|+- -.++.|+..+.+++||+.+...+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 6777754 467778888889999998875543
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1e-19 Score=192.10 Aligned_cols=287 Identities=16% Similarity=0.145 Sum_probs=201.8
Q ss_pred ceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeE
Q 001396 741 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 819 (1086)
Q Consensus 741 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i 819 (1086)
..|+.+..+|.|.+++....... ++ ++.+... ..|...|..+.+-|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~e--e~~lk~~---~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LE--ERQLKKP---LAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hh--hhhhccc---ccccceeEeeccCCCceeEEEccCCcee
Confidence 44666777899999986543221 01 1111111 14899999999999767777776 7899
Q ss_pred EEEEccCceEEEE--EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------------
Q 001396 820 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-------------------------- 871 (1086)
Q Consensus 820 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-------------------------- 871 (1086)
++||+++.+++.. +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999888999999999999999986321
Q ss_pred -eEEEeccccCCeEE---EEEeCCCCEEEEEeC-CCcEEEEECCCCceeee-eeee--ccCCCccCCCCceEEEEecCCC
Q 001396 872 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTC-RSLQ--TPDGVMTLAPSETHIQFHKDQT 943 (1086)
Q Consensus 872 -~~~~l~~h~~~v~~---l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~-~~~~--~~~~~~~~~~~v~~~~~s~dg~ 943 (1086)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+........ .... ....+..-.-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 01222345556666 666678899999998 99999999987442211 1111 1111111113567777778889
Q ss_pred EEEE-EeCCeEEEEEcCCccce-eccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCC
Q 001396 944 RFLL-VHETHLAIYEAEELTCL-KQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1019 (1086)
Q Consensus 944 ~l~~-~~d~~i~vwd~~~~~~~-~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1019 (1086)
+|.+ +.|+.|+.|++.+-..- ...+.++ ...-..-..|||+.+|++|+.|..+++|.+.+-+.--.+. +.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence 8887 79999999999864432 1223333 1122223469999999999999999999998876542222 22
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 1020 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 1020 ~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
+.+...+++|.|.+-.-++++++|.++++|++..
T Consensus 359 ---ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 359 ---HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ---cceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 2345567888876667789999999999999943
No 156
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.6e-20 Score=201.11 Aligned_cols=284 Identities=16% Similarity=0.257 Sum_probs=216.5
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-ccceEeccc---cccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h---~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
....+++..++-..|+.++.. .++||.+...... .....+... ...+..|.|..-..+ +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456677888998888888654 5788887654321 111111111 124566788755444 8999999999999999
Q ss_pred CC---CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEEe
Q 001396 467 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG 542 (1086)
Q Consensus 467 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 542 (1086)
.. .+.+..|..|...++++.|++.. ..+|++||.||+|++||++......++......|..+.|+| .+..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 56678899999999999999764 46999999999999999999999999988888999999999 456666665
Q ss_pred eCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 543 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
. .|.+++||++.. ++...+..|. ++|.++.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++..
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 4 778999999854 4566677776 999999999999999999999999999998765433332222 346899
Q ss_pred EEEecCCC-EEEEEE--CCCcEEEEECCCC-CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 622 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 622 v~~s~~~~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
+.|-|+.. +|++++ .|..|+|||+... -+...+..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 99999654 555554 3788999999865 5567777888888888886 344556777
Q ss_pred ccccCccce
Q 001396 698 VEAENKSEV 706 (1086)
Q Consensus 698 ~~~d~~i~v 706 (1086)
++.|+++..
T Consensus 328 ~sKD~tv~q 336 (839)
T KOG0269|consen 328 CSKDGTVLQ 336 (839)
T ss_pred ecCccHHHH
Confidence 777776544
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-20 Score=213.74 Aligned_cols=298 Identities=15% Similarity=0.236 Sum_probs=228.7
Q ss_pred ceEeeecCCCceEEEEEec----------cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 331 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
-..++|||++..++|+|.. +.++.||.+.-...... .+..--..-......++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeecc
Confidence 4568999999866887753 33445554432111100 00000111246778999999
Q ss_pred CCCE----EEEEeCCCEEEEEEecC---CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 401 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 401 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+...
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999876 4444445567789999999999999887 79999999999999998866555
Q ss_pred Eee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC--ceEEEEEecCCCEEEEEeeCCCCce
Q 001396 474 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 474 ~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
+.. ...+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.+ .+..++|+|++..-+....+.+..-
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 542 24577999999743 557899999999999999999988877766655 5788999998764443333456688
Q ss_pred eEEEEeCCC-CeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 550 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 550 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
.|.+||++. ...++++++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ...+..+.|+|.
T Consensus 233 viqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQWCPR 307 (1049)
T ss_pred eeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--CcceeeeeecCC
Confidence 999999874 45677888888 899999999987 78889999999999999999999999864 346889999995
Q ss_pred CC-EEEEEECCCcEEEEECCCCC
Q 001396 628 GT-LLAVIANENRIKILETPESN 649 (1086)
Q Consensus 628 ~~-~l~~~~~dg~i~iw~~~~~~ 649 (1086)
.. .+++++-||.|.|+.+.+..
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcchhhhheeccceeeeeeecCC
Confidence 54 88999999999999988653
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.9e-17 Score=189.78 Aligned_cols=369 Identities=23% Similarity=0.363 Sum_probs=275.6
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCc-eeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEE-C
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 399 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 399 (1086)
.+..|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 4578899999999999998 48888889999999998886 3322 33322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCEEEEEEecC-CCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEe
Q 001396 400 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 400 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~~~~~~~~~ 475 (1086)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|+++ .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 43333 5779999999999999999 6777775 999999999999999999
Q ss_pred ecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 476 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+|...|.++++. +++. .+++++.|+.|++||...+.... .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55555999999999888666666 566666664 4489999988886665 778999
Q ss_pred EeCCCCee-eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc--CCCCCCCCceEEEecCCCE
Q 001396 554 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 554 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~ 630 (1086)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.+.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 342 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSL 342 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCE
Confidence 99987665 44444444 899999999988899988888999999998887776665 3332 5788888433356
Q ss_pred EEEE-ECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee-ccccCccceee
Q 001396 631 LAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEK 708 (1086)
Q Consensus 631 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~vw~ 708 (1086)
++.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWD 398 (466)
T ss_pred EEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEe
Confidence 6665 6788999999988762222222211 4555554 22 22333 67788999999
Q ss_pred eeecCCccccccccCCcccc-cceEEEEEecCCceEEEeeccceeEEeeccC
Q 001396 709 PLFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
........... .. ..+....+++++..++.++.++.+++|+...
T Consensus 399 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 76432221111 11 6788899999999999988899999987643
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.2e-16 Score=185.68 Aligned_cols=372 Identities=24% Similarity=0.396 Sum_probs=285.4
Q ss_pred eccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecCCc-ceEEEeecccCCcc-EEEEEEc-CCeEE
Q 001396 431 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK 506 (1086)
Q Consensus 431 ~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~s~-dg~i~ 506 (1086)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 558999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 99999
Q ss_pred EEEcCC-CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 507 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 507 vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
+|+... ......+..+...+..++|+|+++.++.++. .++.+.+|+...+..+..+.+|. ..+.+++|+|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 211 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence 999998 7778888899999999999999998777753 37789999999988888888866 8999999999998
Q ss_pred -EEEEEECCCcEEEEEcCCCeeEE-EEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe-eeecccccccee
Q 001396 586 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR 662 (1086)
Q Consensus 586 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~ 662 (1086)
.+++++.|+.|++||...+.... .+..+... . ...|++++.++++++.|+.+++|+...... +...
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence 44555999999999988777777 56555432 2 228999998999999999999999886533 1110
Q ss_pred eeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCce
Q 001396 663 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 742 (1086)
Q Consensus 663 ~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 742 (1086)
..|...+.++.+.|++..
T Consensus 281 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 281 --------------------------------------------------------------SGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred --------------------------------------------------------------ecCCccEEEEEECCCCCE
Confidence 014556778888888888
Q ss_pred EEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE--eCCeEE
Q 001396 743 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVIS 820 (1086)
Q Consensus 743 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~dg~i~ 820 (1086)
+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88877787788886544321 11111 01255578888884343566655 368899
Q ss_pred EEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEe
Q 001396 821 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 899 (1086)
Q Consensus 821 iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s 899 (1086)
+|+.............. .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++
T Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
T COG2319 355 LWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431 (466)
T ss_pred eeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence 99998877333333222 288999998 7 55554 88999999999999888777775547799999999999999999
Q ss_pred CCCcEEEEECCC
Q 001396 900 GDAQIFVWDVDG 911 (1086)
Q Consensus 900 ~dg~i~iwd~~~ 911 (1086)
.++.+++|+...
T Consensus 432 ~~~~~~~~~~~~ 443 (466)
T COG2319 432 SDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEeccC
Confidence 999999999987
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=5.5e-19 Score=180.65 Aligned_cols=291 Identities=13% Similarity=0.163 Sum_probs=219.4
Q ss_pred ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE-EEEEeCCCEEEEEEecCCCc-cc
Q 001396 349 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL-LGVAYSKHIVQLYAYHGGSD-AR 426 (1086)
Q Consensus 349 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-las~~~d~~i~iwd~~~~~~-~~ 426 (1086)
...+++|||...-+...... -......+.++.|+....+ +|+.+.|..|++|.-..... +.
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred cCCceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccc
Confidence 33679999987655443210 0111234889999887642 33346778899997554311 11
Q ss_pred cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEE
Q 001396 427 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 506 (1086)
Q Consensus 427 ~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 506 (1086)
......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++. ...+|++++..|.|.
T Consensus 73 ~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 73 RVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDII 146 (673)
T ss_pred eeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEE
Confidence 11122222 333444333334 899999999999999998888889999999999999865 447999999999999
Q ss_pred EEEcCCCceeEEecCCCC-ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 507 AWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 507 vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
+-.+.++.....+....+ .+.-+.|++..+.++....+ +|.|.+||+....++..+.. .|..+...++|+|.+.
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNE 221 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCcc
Confidence 999998888777776644 56689999998887765532 78899999998877665543 3358899999999765
Q ss_pred -EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-Ceeeeccccccceee
Q 001396 586 -QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRK 663 (1086)
Q Consensus 586 -~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~ 663 (1086)
.+++.+.|..|.+||....+....+.... +...++|+++|.+|+.|...|.|..||++.. .++..+..|...|++
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~ 298 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR 298 (673)
T ss_pred ceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence 55668999999999999887777775443 3689999999999999999999999999855 778889999999999
Q ss_pred eEEccCC
Q 001396 664 LSVNPIS 670 (1086)
Q Consensus 664 ~~~~p~~ 670 (1086)
++|-|..
T Consensus 299 vafq~s~ 305 (673)
T KOG4378|consen 299 VAFQPSP 305 (673)
T ss_pred EEeeecc
Confidence 9998754
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=6.3e-19 Score=174.65 Aligned_cols=263 Identities=16% Similarity=0.211 Sum_probs=186.3
Q ss_pred eccCCCCceEeeecCCC-ceEEEEEeccCcEEEEecCCCceee-eeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 324 LIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg-~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
...|.+.++.+.-++-| ..+.|+=+..|.|.|||+..--... .-.+.+-+ ....+...+.+|...=+.++|||-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeecccc
Confidence 34777788888888765 3356777778999999985321100 00000000 111122237899999999999992
Q ss_pred -CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEeec
Q 001396 402 -GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG 477 (1086)
Q Consensus 402 -g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 477 (1086)
-..|++|.-.+.|++|...+|.-..-...+.+|+..|-.++|||..+. +++|||.||+|+|||++.+ .++.+ +.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kA 300 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KA 300 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ec
Confidence 224778877778999999987654444467789999999999998877 8999999999999999988 33333 88
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC---ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
|.+.|+.+.|+.. -.+|++|+.||+++|||++.. +++..++.|..+|+++.|+|...-.+.++. .|.+|.+|
T Consensus 301 h~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiW 375 (440)
T KOG0302|consen 301 HNSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIW 375 (440)
T ss_pred cCCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEE
Confidence 9999999999654 349999999999999999764 456789999999999999996654444332 27789999
Q ss_pred eCCCCee----------------eeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEE
Q 001396 555 NESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 599 (1086)
Q Consensus 555 d~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 599 (1086)
|+..-.- .+.+--|+ ....+..+.|++.- .++++.+.|| +.||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9863211 01111121 12467788888874 3566666776 4444
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=6.4e-19 Score=180.13 Aligned_cols=293 Identities=16% Similarity=0.215 Sum_probs=214.3
Q ss_pred EEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE--EECCCcEEEEECCCCCeeeeccccccceeeeE
Q 001396 588 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV--IANENRIKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 588 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
..++....+++||....+....+..+...+.+.++.|+.... |++ .+.|..+++|.-.....
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--------------- 69 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--------------- 69 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC---------------
Confidence 344444579999998877777666666666789999988664 444 34577788886442200
Q ss_pred EccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEE
Q 001396 666 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 745 (1086)
Q Consensus 666 ~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 745 (1086)
+|.+-... ....-.|++......++++
T Consensus 70 -------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 70 -------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred -------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeec
Confidence 00000000 0011123333344478899
Q ss_pred eeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEc
Q 001396 746 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 824 (1086)
Q Consensus 746 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~ 824 (1086)
++..+.|+|||+... +....+. +|...|+++.+.-...+||++++ |.|.|..+
T Consensus 97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 999999999988643 1111222 38899999999999999999995 88999999
Q ss_pred cCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-ccccCCeEEEEEeCCC-CEEEEEeCC
Q 001396 825 MTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGGD 901 (1086)
Q Consensus 825 ~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~v~~l~~spdg-~~l~s~s~d 901 (1086)
.++.....|.... ..|+-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|||.. .+||+.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 9998888887654 456689999955667888999999999999987766554 5699999999999954 678899999
Q ss_pred CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEEE
Q 001396 902 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 980 (1086)
Q Consensus 902 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 980 (1086)
..|.+||+....... ++.. ..+.+.++|+++|.+|++| ..|.|..||++........+..|...|++++|
T Consensus 231 kki~~yD~~s~~s~~--~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTD--RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccc--eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 999999998643222 2211 1258899999999999995 77999999999776665567789999999999
Q ss_pred eCCC
Q 001396 981 SCDC 984 (1086)
Q Consensus 981 s~dg 984 (1086)
-+..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8754
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=7.1e-19 Score=178.86 Aligned_cols=312 Identities=13% Similarity=0.116 Sum_probs=224.5
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
++.+-......+.+...|.+++|+|. .+.+++++|+..|.|-+|++.+.++.....+.+.
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~ 231 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT 231 (498)
T ss_pred ccccceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec
Confidence 33344455566777888999999974 4457899999999999999975444444443333
Q ss_pred CcccccceEEEEEecC-CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 724 SKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
.|..+|.++.|+|. -..+++.+.||++++-|+...... . ++... .....+..+
T Consensus 232 --~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~---------v~s~~----~d~~~fs~~ 285 (498)
T KOG4328|consen 232 --PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------E---------VLSLD----TDNIWFSSL 285 (498)
T ss_pred --cCCccccceEecCCChhheeeeccCceeeeeeecchhhH-----------H---------HhhcC----ccceeeeec
Confidence 38999999999995 456888899999999887654220 0 11100 134556778
Q ss_pred EeecCCCEEEEEeC-CeEEEEEccCceE-EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEe
Q 001396 803 ALSKNDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKL 876 (1086)
Q Consensus 803 ~~s~dg~~l~~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l 876 (1086)
.|+.+...++.+.+ |...+||+.++.. ...+.-|...|++++++|-...++|+++.|++++|||++.-. ++-..
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 88888888888875 8999999987654 666777888999999999888899999999999999997632 22333
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC---CCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCe
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 952 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~ 952 (1086)
..|...|.+..|||++..|++.+.|..|+|||.. .... ....+.....+..+ -...-.+|.||..+++++ ....
T Consensus 366 ~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 366 LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-PLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC-ccceeeccCccccc-ccchhheeCCCccEEEEeccCcc
Confidence 4599999999999999889999999999999984 2111 11122221111000 124557899999999996 5677
Q ss_pred EEEEEcCCccceeccccCCccCEEE-EEEeCCCC-EEEEEECCCcEEEEEcCC
Q 001396 953 LAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCR-MVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~-~l~s~~~Dg~v~vWd~~~ 1003 (1086)
|-|+|-..++.+.++.......|.+ ..|.|-+. +++-++..|.|+||--+.
T Consensus 444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 9999999999887755544445555 46889776 444445567888886543
No 164
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=168.42 Aligned_cols=407 Identities=10% Similarity=0.124 Sum_probs=260.3
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
-+.|||+|+++|+++.- .+.|-|.++-+..+.. .--+.|..+.|..|.-. .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 6888888876543321 22456888999999885 566778899999999999988888
Q ss_pred eecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 475 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+.....++.+++|+| || +.|.+...|-.|.+|.+.+.+.... ......+..++|+|||++.+.++.- |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999965 55 5777788899999999988665443 3344456889999999999988752 22223334
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
..-+....++.+.... -....+.|+|||..+++ ||.--.-.+...... -.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEe
Confidence 3333445556666555 66788999999987765 442211111111111 23788999999999999
Q ss_pred EECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 634 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
|+.|+.+++.+--+-+.+..+- |...+ .|.+..+-..+..+
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999987654333222211 00000 01110000000000
Q ss_pred CccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCce--ecCCCCCceeeecCC
Q 001396 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL--YQPRHGPQFMVNDTT 791 (1086)
Q Consensus 714 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 791 (1086)
. -.-...++.|.|..- ...+|....... ......+++ ..+.+. .
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y-----E~~~~pv~~~~lkp~tD-------~- 314 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIY-----EQQMTPVKVHKLKPPTD-------F- 314 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhh-----hhhhcceeeecccCCCC-------C-
Confidence 0 001122333433221 011111100000 000000000 000010 1
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeC---CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~ 868 (1086)
.+..-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|+...|.| +...|+.+.....+++|...
T Consensus 315 -pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 315 -PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCC
Confidence 123456778999999999999986 569999998776655443 456899999999 77788888878889999887
Q ss_pred CceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 001396 869 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 903 (1086)
Q Consensus 869 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~ 903 (1086)
....+.. .+..-.|..+.|.-+|..++..+.|.-
T Consensus 392 g~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 392 GPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 6555543 333467999999999999999998873
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.1e-18 Score=169.85 Aligned_cols=325 Identities=16% Similarity=0.209 Sum_probs=225.0
Q ss_pred eeecCCCccEEEEEECC----C-CCEEEEEeCCCEEEEEEecCCCccccceEe--ccccccEeEEEecCCCC--cEEEEE
Q 001396 384 ALVRDPGVSVNRVVWSP----D-GSLLGVAYSKHIVQLYAYHGGSDARQQLEI--DAHVGNVNDLAFSAPCK--QISVIT 454 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~sp----d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~d~~--~l~l~s 454 (1086)
.+..+|+.+|..++|++ + -..+|+++. ..+.+|.......++.+... ..|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34678999999999985 2 344555544 46899998765533332222 24777888899977643 348888
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe---cCCCCceEEEEE
Q 001396 455 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 531 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~ 531 (1086)
||.-|.|+|.|+.++++...+.+|...|+.+.++|. +.++++++|.|..||+|++++..++..+ .+|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 999999999999999999999999999999999886 4579999999999999999999998876 567789999999
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++|.++++++. |..|.+|++...+....+. .+..|+|++...=.-. -...+.+.. +..
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE---------~s~~~~~~~t~~pfpt--~~~~fp~fs------t~d 248 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLE---------LSITYSPNKTTRPFPT--PKTHFPDFS------TTD 248 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhh---------hhcccCCCCccCcCCc--ccccccccc------ccc
Confidence 999999999987 7889999998654322221 1133444432210000 001111110 111
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC-CCCeee-------------eccccccceeeeEEccCCCceeccc
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVD-------------AAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~-------------~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
-+...|.|+.|- |.++++-+-++.|..|... -.+.+. .+.-....++.+.|.
T Consensus 249 --iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~---------- 314 (385)
T KOG1034|consen 249 --IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA---------- 314 (385)
T ss_pred --cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe----------
Confidence 122345555555 4567777777777777652 111111 111112223333332
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
| .+-++.|+.|...|.+.+||+...++..+..+.-+. ....|+..+|+.||..++....|++|.-||.
T Consensus 315 ------~----d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~--~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 315 ------F----DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK--SGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ------e----cHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc--ccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 1 466889999999999999999988876555554333 5678999999999999999999999888874
No 166
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.7e-17 Score=177.30 Aligned_cols=605 Identities=13% Similarity=0.128 Sum_probs=361.9
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-------
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------- 401 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------- 401 (1086)
..-.++.|+|.| |+|-|+. ..|.+-|..+-+.+.. +..|...|+.+.|.|-
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 357889999999 6888886 6789999888877765 6678999999999872
Q ss_pred -----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 402 -----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 402 -----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~---d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.-+||++...|.|.+||...+..+. .+..|..++..++|-+ +++. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 1267888889999999999887554 5778899999999865 3434 56666668899999999999988
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc-------eeEEecCCCC----------------------
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-------ARVDYDAPGL---------------------- 524 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~---------------------- 524 (1086)
..........++.+.|... ..+..-+..|.+.+.+.-... .......+..
T Consensus 150 k~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 8776667777788776643 455555566666666542211 1111111110
Q ss_pred ---ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC--CEEEEEECCCcEEEE
Q 001396 525 ---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIW 599 (1086)
Q Consensus 525 ---~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iw 599 (1086)
-...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|
T Consensus 229 fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123567886665555444 3459999999888887776655 666667776664 578999999999999
Q ss_pred EcCCC----------------eeEEEEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEEECCCCCeeeec--------
Q 001396 600 DMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAA-------- 654 (1086)
Q Consensus 600 d~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~-------- 654 (1086)
-.+.. .....+..-... .....+..|. ...+++.-.+|.+.+|.+.+++.-...
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 76542 111111111111 1122233342 445556666788888888755321111
Q ss_pred -----------------------cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 655 -----------------------GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 655 -----------------------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
.+|.....+....|...........+ ......-..+++.|...|+|.+.|+.+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~----~n~~~~~~pLvAvGT~sGTV~vvdvst 456 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG----GNTPAGTVPLVAVGTNSGTVDVVDVST 456 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCC----CCccceeeeeEEeecCCceEEEEEecc
Confidence 12222233333332222221111000 000011134678899999999999875
Q ss_pred cCCccccccccCCcccccceEEEEEecCCceEEEeecc--ceeEEeeccCCccccCcccccccCCceecCCCCCceeeec
Q 001396 712 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 789 (1086)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 789 (1086)
........ .|...|.++.|......+-.+.+. ..-.+ -...+.+-++.+|.......
T Consensus 457 ~~v~~~fs------vht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 457 NAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred hhhhhhhc------ccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEccccccccccc
Confidence 44333333 388899999998877754433321 00000 01234556667776443333
Q ss_pred CCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEc-CC---------------CCCE
Q 001396 790 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNV 852 (1086)
Q Consensus 790 ~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~ 852 (1086)
+.+ ..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++...-.-.-|+.++|+ |. ..+.
T Consensus 516 l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~ 594 (1062)
T KOG1912|consen 516 LQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENL 594 (1062)
T ss_pred CCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhce
Confidence 332 4688999999999999999997 6779999998877665544333447888887 31 1123
Q ss_pred EEEEeCCCeEEEEEcCC-------ceeE-EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccC
Q 001396 853 IAIGMDDSTILIYNARS-------SEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 853 lasg~~dg~v~iwd~~~-------~~~~-~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
.+..+.| .+++.+.. +... ...+.....+..++| .+..|+.|..+|.+.+||+.....+...-...+.
T Consensus 595 vv~ds~e--s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~r 670 (1062)
T KOG1912|consen 595 VVLDSVE--SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPR 670 (1062)
T ss_pred eeecccc--chheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCch
Confidence 3333322 23333211 1111 111111123344666 4678999999999999998763211100011111
Q ss_pred CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 925 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 925 ~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
. ...-..+-|....+++-...-+.+||.+....+..+ .|. ..++..+.+......++. .|.++|+-.+.
T Consensus 671 a------~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 671 A------HSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVLP--NDNKERFRVMP 741 (1062)
T ss_pred h------hheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceecC--CCCceeEEecc
Confidence 1 122333345434455555566899999887777664 333 344555555554444443 45578877766
Q ss_pred CCcee
Q 001396 1003 NLEVQ 1007 (1086)
Q Consensus 1003 ~~~~~ 1007 (1086)
.....
T Consensus 742 mks~~ 746 (1062)
T KOG1912|consen 742 MKSPP 746 (1062)
T ss_pred ccCCc
Confidence 55443
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=1.7e-17 Score=171.48 Aligned_cols=499 Identities=14% Similarity=0.115 Sum_probs=296.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeE-EEe-----cCCCCcEEEEEEeCCCcE
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAF-----SAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~-----s~d~~~l~l~s~~~d~~i 461 (1086)
.|...|.|+.|+.+...+.+++++..+.-||+.+... ... .+ ...-|.. +-. ...++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4677888999998888777776555555555544322 111 11 1111111 111 111111157778889999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
.+.+ +.|+.-+.+..|.+.+.+-.|+ +||.-|+++++||.|++|.- ++-...++.....+|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 8888889999999999999995 47778999999999999963 333333445566689999999999988887
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
. .+.+.+=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||... ..+..-..| ..+|++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~--ey~ITS 232 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAE--EYAITS 232 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChh--ccceee
Confidence 6 3457777777666677778877 9999999999999999999999999999754 444433333 346999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++|+|+ +.+++++.+ ++++ .
T Consensus 233 va~npd-~~~~v~S~n-t~R~---~------------------------------------------------------- 252 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARF---S------------------------------------------------------- 252 (737)
T ss_pred eeeccc-cceeeeeee-eeee---c-------------------------------------------------------
Confidence 999999 667766542 3331 0
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCC
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
....+.|..++||+||..+++++..|.+.+--.-..
T Consensus 253 -----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq--------------------- 288 (737)
T KOG1524|consen 253 -----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ--------------------- 288 (737)
T ss_pred -----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh---------------------
Confidence 013457888999999999999988887754210000
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-eCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
..+ + +.+=++. ....|.+-|+.++.+ ..-.....|...+.+- + +|+++. ..
T Consensus 289 ---------------~l~-----~--~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT-s~ 340 (737)
T KOG1524|consen 289 ---------------QLV-----S--GNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT-SL 340 (737)
T ss_pred ---------------hhh-----h--ccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe-cc
Confidence 000 0 0111112 235566777665544 2222445666666554 3 333333 34
Q ss_pred eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 861 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 861 ~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.|++|.-......-.+.+....+.-+.-+ ...+++ ....+|.++..+...... ..+.+... .....-..|-
T Consensus 341 qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsL 411 (737)
T KOG1524|consen 341 QVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSL 411 (737)
T ss_pred EEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeec
Confidence 68887765544334444444333222221 112222 233346666555411100 01111111 1122223343
Q ss_pred CCCEEEE--E-eCCeEEEEEc-CCccceecc-ccCCccCEEEEEEe----CCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 941 DQTRFLL--V-HETHLAIYEA-EELTCLKQW-FPISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 941 dg~~l~~--~-~d~~i~vwd~-~~~~~~~~~-~~~h~~~v~~l~fs----~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
....|+. . ....+.+||. .+|+....- ...|...|..++.. ++++.++.-...+.++|=.+.+...-.++.
T Consensus 412 andtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~ 491 (737)
T KOG1524|consen 412 ANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY 491 (737)
T ss_pred ccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh
Confidence 4445555 2 3345889998 666654321 12345556555554 345566666555666655444322221221
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1012 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
... .....++|+ |...+++|-.|+++.||=.+...
T Consensus 492 KiG----------TmVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 492 KIG----------TMVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhh----------hhhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 111 123457788 56789999999999999887654
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.7e-18 Score=170.14 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=186.5
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 385 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
...||.++|..++|+| +...||+|+.|.+|.||.+-.+... .....+.+|..+|.-++|+|...+ +|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 3789999999999999 6778999999999999999765442 234468899999999999999887 789999999
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC-ceEEEEEecCCCEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 538 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l 538 (1086)
+|.+||+.+|+.+.++. |...|++++|+ .||.+|++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 99999999994 5888999999999999999999998887766655 556677889999 6
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCee-EEEEcCCCCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL 616 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~ 616 (1086)
++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.|.+|.+.++. |-.|+.|+.|.+....+ +.-+......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6666677778999999977644332222221 1346666778899888766 45899999999987653 2333322223
Q ss_pred CCCceEEEecC
Q 001396 617 PENPRICFNKN 627 (1086)
Q Consensus 617 ~~v~~v~~s~~ 627 (1086)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34466777764
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.8e-17 Score=166.38 Aligned_cols=302 Identities=13% Similarity=0.139 Sum_probs=216.8
Q ss_pred ccceEEEEEecCCc-eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 728 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 728 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
..++.++.|.+++. .+++++.|..|++|.+........+ +.....-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45688889988877 8999999999999998765321111 0112222233 3899999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcc--------C--------ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001396 807 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 807 dg~~l~~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 869 (1086)
+|..+|+|+| |.+.+|-.. + +.....+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 445667788999999999999 999999999999999999999
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeee---eeeccCCCccC------------CCCce
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR---SLQTPDGVMTL------------APSET 934 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~------------~~~v~ 934 (1086)
|+++..+.+|...|..++|.|-++++++-+.|...+++++......... .+....+.... .....
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999999999999999999987777766542211100 00000000000 02346
Q ss_pred EEEEecCCCEEEEE-----eC-----CeEEEEEcCCccceeccccCCccCEEEEEEeC------------------CCCE
Q 001396 935 HIQFHKDQTRFLLV-----HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM 986 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-----~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~------------------dg~~ 986 (1086)
.++|+|||.+|++. .. +..++|+-+........+++-..++..+.|+| -+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999972 12 33567765544433333444466666777765 1223
Q ss_pred EEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 987 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 987 l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
+|.++ ...|+|||.++-..++......|.. ...++|++ ||..|+..+.||-..+-.+...+
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy~~---------iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA---------ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeeeee---------ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44554 4579999999988887776333222 34789999 89999999999987776654433
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=195.49 Aligned_cols=286 Identities=19% Similarity=0.287 Sum_probs=221.6
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
.++.|.||...|.|+.|...|+| +++|+.|..|+||..+++.++.. ..||++.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 34567899999999999999986 99999999999999999999987 88999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE---ee
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE 476 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~---~~ 476 (1086)
.+..++|+++.|..|++|.+..+..+. .+.+|++.|++++|+|- .+.+.||++++||..-.-.+.. ++
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999998766 67899999999999994 3678899999999771111110 11
Q ss_pred -cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCE-EEEEeeCCCCceeEEEE
Q 001396 477 -GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 477 -~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~iw 554 (1086)
....-+.++.| ..++..+++++.|+.-..|.+.-... +...+.-+.++.|-.. .++.- .+..+.+|
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vw 380 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVW 380 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeee
Confidence 11233444444 44667899999999988886543211 1112222223323322 22222 26678999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEE-EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
++.+|.....+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+....||+||..++.
T Consensus 381 nl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred ecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEec
Confidence 999999999999988 8999999999877664 5899999999999999888776633 234678899999999999
Q ss_pred EECCCcEEEEECCCCCee
Q 001396 634 IANENRIKILETPESNSV 651 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~ 651 (1086)
..+-|.+.|.....+...
T Consensus 456 sd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCCceEEeccCCCccc
Confidence 988999999887765443
No 171
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-16 Score=171.88 Aligned_cols=562 Identities=15% Similarity=0.146 Sum_probs=328.7
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC----------CCcEEEEEEeCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDKT 460 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d----------~~~l~l~s~~~d~~ 460 (1086)
..-.++.|+|.| +||.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ...++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346688999877 78888665 58888988766555 67789999999999763 24567899999999
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCc--cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 537 (1086)
|.+||...+..+..+..|..++..++|.+..+. ..|++.....++.+|+..+++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876553 4788888899999999999999888887777777888888 4455
Q ss_pred EEEEeeCCCCceeEEEEeCCC-------CeeeeEEecccc-------------c---CCc------eEEEEEecCCCEEE
Q 001396 538 LFSCGTSKEGESFLVEWNESE-------GAIKRTYQGLQL-------------Q---HNS------VSVVHFDTAKDQIL 588 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~-------~~~~~~~~~~~~-------------~---~~~------v~~~~~~~~~~~l~ 588 (1086)
+...+. .|.+.+-+.-. |+..+.-..|.. + ... ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 544432 33444443221 122211111110 0 000 11246788777677
Q ss_pred EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC--CCEEEEEECCCcEEEEECCCCCeeeec-----c-ccccc
Q 001396 589 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNSVDAA-----G-VLSDN 660 (1086)
Q Consensus 589 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~-~~~~~ 660 (1086)
-......+.++|++-..++.....+.+. +.-+.+-|+ ...|++...||.+.+|-.+........ . .....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q 324 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ 324 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence 7777888999999999999888877553 445666665 457999999999999987653211111 0 00111
Q ss_pred eeeeEEccCCCceeccccCCeeeecCCCCCC-cccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecC
Q 001396 661 LRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG 739 (1086)
Q Consensus 661 v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 739 (1086)
+.++.. ..... .+.+...|. ...++.--++|.+.+|++..+......... ...-+..+.|.
T Consensus 325 ~~~vr~--m~~~r---------p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~-- 386 (1062)
T KOG1912|consen 325 VHVVRP--MEEFR---------PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFN-- 386 (1062)
T ss_pred eEEEee--chhcc---------cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----ccccccccccc--
Confidence 111111 00000 000111222 333444455677788876521111000000 00000001110
Q ss_pred CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeE
Q 001396 740 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVI 819 (1086)
Q Consensus 740 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i 819 (1086)
+..+..+ . .. +......+ +|.....+....|-.+.
T Consensus 387 ~~~~~v~---------k-----------------~~---------l~~LS~dg-~h~sGs~~~~~~p~p~~--------- 421 (1062)
T KOG1912|consen 387 LSTKLVG---------K-----------------TS---------LISLSDDG-SHSSGSTCVRMRPMPEL--------- 421 (1062)
T ss_pred Cceeehh---------h-----------------cc---------ccchhhcC-CCCCCceeeecccCccc---------
Confidence 0000000 0 00 00000000 13333333333221111
Q ss_pred EEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEe
Q 001396 820 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 899 (1086)
Q Consensus 820 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s 899 (1086)
...... . +.=+....-| ++|.|...|+|.++|+.++..-+.+..|.+.|.++.|-.... |++.+
T Consensus 422 --------t~~~~~--p-~~n~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfs 485 (1062)
T KOG1912|consen 422 --------TKVEND--P-GGNTPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFS 485 (1062)
T ss_pred --------ceeecC--C-CCCccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEee
Confidence 111111 1 1111122233 899999999999999999999999999999999999976543 44433
Q ss_pred C----------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccc
Q 001396 900 G----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWF 968 (1086)
Q Consensus 900 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~ 968 (1086)
. -+.+.|-|+.+|..+..+.++..+. .+|+.+..|.-|+||++. .+.-+.+||+++..+++..-
T Consensus 486 ys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS 560 (1062)
T KOG1912|consen 486 YSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMS 560 (1062)
T ss_pred eccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHHh
Confidence 2 2457788998877544333333322 479999999999999995 77889999998877776422
Q ss_pred cCCccC-EEEEEEe-CCC----------------CEEEEEECCCcEEEEEcCC-CceeeeeccccccCCCCccC-cccce
Q 001396 969 PISSVP-ISQATFS-CDC----------------RMVFTSFVDGTLSIHEASN-LEVQCRILSTAYLRPTTSCL-HVYPH 1028 (1086)
Q Consensus 969 ~~h~~~-v~~l~fs-~dg----------------~~l~s~~~Dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 1028 (1086)
-.-+ |+.+.|+ |.- ...++.+.|. +++.+.. +....... ..... ..+ .....
T Consensus 561 --~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgs---q~~~a-~esfafal~ 632 (1062)
T KOG1912|consen 561 --LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGS---QVNTA-WESFAFALC 632 (1062)
T ss_pred --hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhcccc---chhhH-HHHHHHHHH
Confidence 2344 8889998 321 1233333222 2222211 11110000 00000 000 11123
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1029 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1029 ~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.++|- +..++.|+.+|.+.+||+..-+
T Consensus 633 ~mAwk---~d~lv~GD~~GNl~~WDlg~R~ 659 (1062)
T KOG1912|consen 633 AMAWK---DDILVVGDVEGNLVVWDLGRRQ 659 (1062)
T ss_pred hhhcc---CCeeEeecccCceeEEeccccc
Confidence 46665 4799999999999999975443
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=162.26 Aligned_cols=289 Identities=14% Similarity=0.200 Sum_probs=206.4
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC-------CCCCE
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL 404 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pdg~~ 404 (1086)
..+.|||||.- |.+-+.|..+.+|++...-.-.....+. ........ --.....|...+|- |+..+
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~----~~~~~~~~--r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL----NFSKHLSY--RYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc----ccccceeE--EeccCCEEEEEEeeeccccCCCccce
Confidence 45789999985 7778899999999985321100000000 00000000 11123556666664 68889
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccc---cEeEEEecCCCCcEEEEEEeCCCcEEEEeC-CCCcee--EEee--
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSFE-- 476 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~-~~~~~~--~~~~-- 476 (1086)
+|+.+.+.-|++||.-+|+...... ...|.. ...+++|+|||. .|+. +....|+++|+ +.|+.- ....
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhhc
Confidence 9999999999999999998544221 223444 346799999999 5664 45789999998 455432 2211
Q ss_pred ---cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 477 ---GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 477 ---~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+..+.+.+++|+|. +...++.++...++-++.-...++...+-+|.+.|+.+.|.+||+.|++|+.- +..|..
T Consensus 202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~ 277 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILC 277 (406)
T ss_pred ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEEE
Confidence 23677888899876 45689999999999999999999999999999999999999999999999863 557999
Q ss_pred EeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 554 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 554 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
||++. +.++..+..|......-.-....|++++|++|+.||.|++||+++ +.....+..+. ..++.++++|--.++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpil 355 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPIL 355 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCccccee
Confidence 99984 566677777662122223345678899999999999999999998 66566665443 348899999987778
Q ss_pred EEEECC
Q 001396 632 AVIANE 637 (1086)
Q Consensus 632 ~~~~~d 637 (1086)
++++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 777654
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.8e-18 Score=173.19 Aligned_cols=252 Identities=13% Similarity=0.209 Sum_probs=185.3
Q ss_pred CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccce------eeeeeeecCCCccEEEEEECCC-CCEEEEEeCCC
Q 001396 340 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM------LFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 412 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~ 412 (1086)
|+ ++|.|+.|..|.|||+.--..+. +...+..... ........+|+..|-+++|+.+ ...||+|+.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 56 59999999999999986322211 1111110000 0012235589999999999986 45789999999
Q ss_pred EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcceEEEeecccC
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~ 491 (1086)
+|++||+.+|++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..+ ...+.|-.++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCC
Confidence 99999999998766 56689999999999998776 8999999999999999853333 233 256788899998764
Q ss_pred CccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEE-EEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~-~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
. ..++++..||+|+-+|++.. +++.++..|..+|.++++++.-..++ +++. ++.|.+|++..-..... ..|.
T Consensus 342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vklw~~~~~~~~~v-~~~~ 415 (463)
T KOG0270|consen 342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVKLWKFDVDSPKSV-KEHS 415 (463)
T ss_pred c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEEEEeecCCCCccc-cccc
Confidence 3 57888899999999999987 67889999999999999998766544 4443 78899999875433211 1222
Q ss_pred ccCCceEEEEEecCCCEEE-EEECCCcEEEEEcCCCeeE
Q 001396 570 LQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~ 607 (1086)
..-+...|.++.|+-..++ .|+..+.++|||+.+...+
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 1124567778888866554 4777888999999876543
No 174
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=165.31 Aligned_cols=248 Identities=23% Similarity=0.287 Sum_probs=190.5
Q ss_pred ecCCCccEEEEEECCCC--CEEEEEeCCCEEEEEEecCC-------------CccccceEeccccccEeEEEecCCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDG--SLLGVAYSKHIVQLYAYHGG-------------SDARQQLEIDAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg--~~las~~~d~~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~v~~s~d~~~l 450 (1086)
..+|.+.|..+.-++-| .+.|+=+..|.|+||++... ...+.+.++.+|...=..++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 44677788887777744 55666688899999998531 223456678899999999999993322
Q ss_pred EEEEEeCCCcEEEEeCCCCcee---EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCc
Q 001396 451 SVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLG 525 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~ 525 (1086)
.|+||.--+.|++|...+|.-. ..|.+|...|..++|+|..++ .|++||-||+|+|||++.+.. ....+.|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 4888888889999999888654 467789999999999998764 999999999999999998732 3344788889
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEc
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM 601 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~ 601 (1086)
|+.+.|+.+-.+|++|+. +|.+.|||++. ++++..|+.|. .+|+++.|+|... .|++++.|..|.+||+
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk---~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHK---APITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEecc---CCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 999999999888888875 78899999985 56778888887 9999999999754 5666889999999998
Q ss_pred CCCee----------------EEEEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEE
Q 001396 602 NKVQL----------------LTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKIL 643 (1086)
Q Consensus 602 ~~~~~----------------~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw 643 (1086)
....- .+.+-.|.+...+..+.|+++ ..++++.+.|| +.||
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 63211 112233444566888999985 34666766676 4444
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=2.9e-17 Score=159.62 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=148.3
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEEc-cCceEEEE---E----cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 799 VPCFALSKNDAYLFSASGGVISLYIV-MTFKTILT---I----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~dg~i~iwd~-~~~~~~~~---~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
..+++|+|||..|.+|....|+++|+ ..|+.-.. + .+..+-|.|++|+|.+.+.+|+|+...++-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 45899999999999999999999999 44432211 1 1235678999999988889999999999999999999
Q ss_pred eeEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-
Q 001396 871 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 948 (1086)
Q Consensus 871 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~- 948 (1086)
.++..+-+|.+.|+.+.|.+||+.|.+|++ |-.|..||+..... .+-.+..|......-......|+|++|++|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999875 66799999986432 222233333211112234457899999996
Q ss_pred eCCeEEEEEcCC-ccceeccccCCccCEEEEEEeCCCCEEEEEECC
Q 001396 949 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 949 ~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
.+|.|++||+++ |..+.. +..|..-+..+.+.|-=..++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999998 665554 55688999999999987778877654
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=5.1e-17 Score=158.06 Aligned_cols=337 Identities=12% Similarity=0.165 Sum_probs=224.4
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCeeE
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 607 (1086)
.+|||+|++++++. +-.+.+-|..+-+..+.+... ..|..+.|..|.-++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 68999999999997 446888888887776666553 47888999999888887 467889999999988877
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
..+... ..++..++|||||+.+...+ -+-.|.+|.+.+........
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------- 131 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------- 131 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence 777643 45689999999997766554 47889999988654332111
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
....+..++|.+||++.+..+.....-...+.
T Consensus 132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-------- 163 (447)
T KOG4497|consen 132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-------- 163 (447)
T ss_pred ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence 11223566777777766555442110000000
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEE
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL 843 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l 843 (1086)
..+-|.+... +.+ ..-..+.+.++|||..+|+-. +-+|..|.. .-.+..+
T Consensus 164 ------~c~~W~ll~~-----f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v 216 (447)
T KOG4497|consen 164 ------SCKAWILLKE-----FKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV 216 (447)
T ss_pred ------hhHHHHHHHh-----cCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence 0111211111 111 233456788888888887764 233433332 2356678
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------------------------------------------
Q 001396 844 AFNPHDNNVIAIGMDDSTILIYNARSSEV--------------------------------------------------- 872 (1086)
Q Consensus 844 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------------------------------------------- 872 (1086)
+|+| .+++|++|+.|+.+++.+--+-+.
T Consensus 217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 8888 888888888888887754322111
Q ss_pred ---------EEEec------cccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeeeeeeccCCCccCCCCceE
Q 001396 873 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 873 ---------~~~l~------~h~~~v~~l~~spdg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
+..++ ...-.+.-++||+|..+++|-.+ -..+.+||+...+... .+... .+|..
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-----vLiQk----~pira 366 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-----VLIQK----HPIRA 366 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh-----hhhhc----cceeE
Confidence 11111 11124667999999999998653 3569999998744221 11111 25899
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg 994 (1086)
..|.|....|++ ....++++|......++..... .-.|..++|.-+|..++-.+.|-
T Consensus 367 f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC--CceeeeEEecCCCcEEEEEcCCc
Confidence 999999988888 4666799999987666665433 58899999999999999998885
No 177
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=177.44 Aligned_cols=302 Identities=16% Similarity=0.221 Sum_probs=235.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+...|.+|.+-|..|.|...|. +|++|+.|..|.+||+.+++....+ ..||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 44566889999999999999998 6999999999999999998877541 5689999999889
Q ss_pred CC--CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 399 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 399 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
-| +.+.|++++.||.+++=.+.....+.....+..|.++|.-++.-|+... -|.+++.|+.+.-.|+.++.+...+.
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 4678999999999999887654444434457789999999999999887 79999999999999998877654432
Q ss_pred ---cCCc---ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee------EEe------cCCCCceEEEEEecCCCEE
Q 001396 477 ---GHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 477 ---~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~d~~~l 538 (1086)
.+.. ...+++..|. +...+++++.|..+++||.+..... ..+ ....-.|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 2223 4567777665 3458999999999999998653322 111 1223369999999777666
Q ss_pred EEEeeCCCCceeEEEEeCCCC------------eee-eEEecccccCCceEEEE-EecCCCEEEEEECCCcEEEEEcCCC
Q 001396 539 FSCGTSKEGESFLVEWNESEG------------AIK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~------------~~~-~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
++... +-.|+++....+ ..+ +.++||... ..|..+- |.|...++++|+..|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 65554 556888854322 122 337888733 2366664 5788999999999999999999999
Q ss_pred eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 605 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 605 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.+..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99999987766 5899999999999999999999999987544
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.9e-17 Score=162.95 Aligned_cols=237 Identities=14% Similarity=0.206 Sum_probs=182.0
Q ss_pred CCCEEEEE---eCCCEEEEEEe-cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-------
Q 001396 401 DGSLLGVA---YSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------- 469 (1086)
Q Consensus 401 dg~~las~---~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~------- 469 (1086)
+.++||.. +..|...+--+ ++|+.-...-.+.||+++|..++|+|-+.. .++|||.|.+|.||++..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45666654 22333333332 234433333346799999999999998877 8999999999999998754
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
+++..+.+|...|..++|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||.++++.+. |.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence 34678899999999999998854 589999999999999999999999887 8999999999999999999987 66
Q ss_pred eEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCee---EEEEcCCCCCCCCceE
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL---LTTIDAGGGLPENPRI 622 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v 622 (1086)
.|++||.++++.+..-.+|. ...-..+.|-.++. +++.+ .+..+-+||..+-+. ...+.. ...|.--
T Consensus 196 kvRv~dpr~~~~v~e~~~he--G~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~P 269 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHE--GAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLP 269 (472)
T ss_pred eeEEEcCCCCcEeeeccccc--CCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc---CCceEEe
Confidence 79999999999998887777 33445566777888 55543 678899999876433 233332 2346666
Q ss_pred EEecCCCEEEEEE-CCCcEEEEECCCCCe
Q 001396 623 CFNKNGTLLAVIA-NENRIKILETPESNS 650 (1086)
Q Consensus 623 ~~s~~~~~l~~~~-~dg~i~iw~~~~~~~ 650 (1086)
-|.+|.+.++.++ .|+.|+.|.+.+..+
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6788888776554 599999999987754
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.1e-18 Score=195.64 Aligned_cols=250 Identities=14% Similarity=0.156 Sum_probs=198.7
Q ss_pred CceEeeecCCCce---EEEEEeccCcEEEEecCCC---ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 330 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 330 ~V~~~~~spdg~~---lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
....++|++.|.. +||.|..||.|.+||...- ..... ......|.+.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence 6778999888775 6999999999999998652 11110 011567999999999999766
Q ss_pred -EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc--
Q 001396 404 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 480 (1086)
Q Consensus 404 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-- 480 (1086)
+||+|+.||.|.|||+..-+..-... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998744322111 1124568999999987776 799999999999999999988877766655
Q ss_pred ceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCce-eEEecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+..+.|+|+... .+++++.|. .|.+||++.... ..++..|...|.++.|++.+ ++|++++. |+.|.+|+
T Consensus 208 ~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN 282 (1049)
T KOG0307|consen 208 HCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWN 282 (1049)
T ss_pred ceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEec
Confidence 4678899987554 555555443 599999987554 45678999999999999976 77888876 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCe
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 605 (1086)
.++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+....
T Consensus 283 ~~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 283 PNTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999998755 8999999999887 66678999999999987654
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=6.1e-18 Score=159.71 Aligned_cols=254 Identities=19% Similarity=0.218 Sum_probs=195.5
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeec-CCCccEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 395 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~ 395 (1086)
|......|.+|.+.|+++.|-.+++ |.+|..-|.|++|++.+...+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 4556677889999999999999995 78899999999999998876643 33 36678888
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccc------------------------cceEe--------------------
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR------------------------QQLEI-------------------- 431 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~------------------------~~~~~-------------------- 431 (1086)
+.--|+ ..|.+-+.|+.+.+|++..+.-+. +....
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence 888887 556677799999999987622110 00000
Q ss_pred ------ccccccEeEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCCc----------eeEEeecCCcceEEEeecccCCcc
Q 001396 432 ------DAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS----------RTYSFEGHGAPVYSLCPHAKENIH 494 (1086)
Q Consensus 432 ------~~h~~~v~~v~~-s~d~~~l~l~s~~~d~~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~ 494 (1086)
.+..+.+.+..+ ..++.+++++.|..+|.+.+||+.++. .......|.++|.++.+.+.-+
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-- 218 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-- 218 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--
Confidence 011234444443 234666788999999999999999983 3344556999999998865433
Q ss_pred EEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001396 495 FIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 570 (1086)
.=++|+.+..+..|+++.... .......+..+..+.+-||++.+++++. |++|++|+.++.+++..++-|.
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW----D~RiRVyswrtl~pLAVLkyHs- 293 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW----DHRIRVYSWRTLNPLAVLKYHS- 293 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc----CCcEEEEEeccCCchhhhhhhh-
Confidence 346788888899998865422 2234445567888999999999999998 7789999999999999999988
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 571 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
..|++++|+|+.+.+++++.|+.|.+|++
T Consensus 294 --agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 --AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999986
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=8.5e-16 Score=159.09 Aligned_cols=497 Identities=13% Similarity=0.169 Sum_probs=285.2
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE--CCCCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 403 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~ 403 (1086)
.|+.-|.|+.|+.+.. ++.+ +.|..+.+|.-.+..........- ..++. .-| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p~-------df~pt---~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLPD-------DFVPT---DMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCCc-------ccCCc---ccc---ccccccCCCCCcc
Confidence 5677788999999886 4554 455666655543332221111100 00000 001 000000 01235
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
.++.++.||.+.|.+-.. +.-+ ....|.+.|.+-.|+|||. -|++++.||.|++|. ++|-...++.....+|+
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 788888999988887443 2222 5679999999999999999 799999999999999 78877667766788999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
|++|.|+.+ ..+++.+ +.+.+=-+.....+..+..|.+-|.++.|++..+.+++++. |....+||.. |..+.
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence 999987654 3455444 44555555666777888999999999999999999999986 8889999965 45555
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.-..|. .+|++++|+|+ +.++.++. ++++ +.. .....|..++||+||..+++|+..|.+.+=
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 555555 89999999999 55555553 2333 221 123458999999999999999999887653
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
..-..+... +..-++......|.+-|+.. ..+..+.+|
T Consensus 284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~p 321 (737)
T KOG1524|consen 284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEFP 321 (737)
T ss_pred eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhCc
Confidence 322211110 01111111122233333221 111222222
Q ss_pred CcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE
Q 001396 724 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 803 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~ 803 (1086)
. ++.... -.-..|++++.. .+++|.-..- .++.+.|...+ .+.-+.
T Consensus 322 ~-----rv~k~s--L~Y~hLvvaTs~-qvyiys~knw-----------ntpiiidgre~---------------tr~lie 367 (737)
T KOG1524|consen 322 Q-----RVVKFS--LGYGHLVVATSL-QVYIYSEKNW-----------NTPIIIDGRED---------------TRNLIE 367 (737)
T ss_pred c-----ceeeee--eceeEEEEEecc-EEEEEecCCc-----------cCcEEEecccc---------------chhHhh
Confidence 2 333333 222334444333 4444431100 01111111111 110000
Q ss_pred eecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCC---e--EEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCceeEE-
Q 001396 804 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT---A--TSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS- 874 (1086)
Q Consensus 804 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i--~~l~~s~~d~~~lasg--~~dg~v~iwd~-~~~~~~~- 874 (1086)
. ..+++......+|.+|..+ |+.....+.+... . ..+... ...|+.- .....+.++|. .+|+...
T Consensus 368 q--~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgD 441 (737)
T KOG1524|consen 368 Q--GEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGD 441 (737)
T ss_pred h--hhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCC
Confidence 0 1122333333557777654 3332222211111 1 223332 2344442 23346788998 7776542
Q ss_pred -EeccccCCeEEEEEe----CCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe
Q 001396 875 -KLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 949 (1086)
Q Consensus 875 -~l~~h~~~v~~l~~s----pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 949 (1086)
.+-.|...|..++.. ++.+.++.....+.+.|=.+++-... .+.++. ...|..++|+...+.|.--.
T Consensus 442 gk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~Ki-------GTmVhtLawndttNiLcglq 513 (737)
T KOG1524|consen 442 GKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIYKI-------GTMVHTLAWNDTTNILCGLQ 513 (737)
T ss_pred ccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhhhh-------hhhhhhhhhccccceeeeec
Confidence 222366677766665 35577788888888887776642111 111111 13578899999888887789
Q ss_pred CCeEEEEEcCC
Q 001396 950 ETHLAIYEAEE 960 (1086)
Q Consensus 950 d~~i~vwd~~~ 960 (1086)
|+.+.||=...
T Consensus 514 Dt~fsVWy~pn 524 (737)
T KOG1524|consen 514 DTCFSVWYYPN 524 (737)
T ss_pred cceEEEEEcCC
Confidence 99999998764
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=7.3e-18 Score=176.38 Aligned_cols=262 Identities=15% Similarity=0.196 Sum_probs=197.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEec-----CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
.+..|...|++++|.|-...|++++.||++.+|+++ ....+.++.+|.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 367799999999999999999999999999999993 2344667788999999999999999999 899999999
Q ss_pred cEEEEeCCC------C----ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC--CceE
Q 001396 460 TIKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCT 527 (1086)
Q Consensus 460 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~i~ 527 (1086)
+|+.|++.. . .....+.||.+.|+.++++..++ .|++++.||+++.|+...... .++.... +--.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 23357789999999999977664 799999999999998766555 3333222 2233
Q ss_pred EEEEecCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc----ccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 528 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 528 ~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++.+.... ..+++... .+.-.+++...+..+..+.... .....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 11222111 2223334444444444443221 112457788999999999999999999999999
Q ss_pred CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccc
Q 001396 603 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 603 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
+++++.....+ ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999888766 446899999999999999999999999999877666554433
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.4e-16 Score=145.29 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=193.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCC---ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
.|.+-++||.+++ |+.|..+|+|.+..+.+- +.....+ .+.....+|.++|+.++|. ..+|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~~~gk------------~~iv~eqahdgpiy~~~f~--d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAEPPGK------------LKIVPEQAHDGPIYYLAFH--DDFLL 76 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccCCCCC------------cceeeccccCCCeeeeeee--hhhee
Confidence 6777899999985 899999999999998641 1111000 1111246899999999998 45677
Q ss_pred EEeCCCEEEEEEecCCCc---cccceE--ecccc-----ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 407 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+|+ ||.|+=|....... .+...+ ...|. -.|+++...|..+ -++.++.|+.++-||+++|+..++++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence 775 59999998865332 111111 11233 2588999998877 45566679999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC----------ceEEEEEecCCCEEEEEeeCCC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
||++.|.++.-. +....+++|++||++|+||.++.+.+..+..-.. .| .+..-+..++++|+.
T Consensus 154 GHtDYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG--- 226 (325)
T KOG0649|consen 154 GHTDYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG--- 226 (325)
T ss_pred CCcceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC---
Confidence 999999999863 2334799999999999999999998776543221 34 444566778988863
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
..+.+|+++..++...+.-. ..+..+.|.. +.++++++.+.|.-|.+. |.+....+...+ ...+..++.
T Consensus 227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~ 295 (325)
T KOG0649|consen 227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQT 295 (325)
T ss_pred --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccC
Confidence 35999999999998888764 4788888865 478888888889999874 444444443322 234444433
Q ss_pred C-CCEEEEEECCCcEEEE
Q 001396 627 N-GTLLAVIANENRIKIL 643 (1086)
Q Consensus 627 ~-~~~l~~~~~dg~i~iw 643 (1086)
. -+++-.++....+.++
T Consensus 296 ~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 296 SPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CceEEEEecccceeeeee
Confidence 2 2344444555555554
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1.8e-16 Score=151.67 Aligned_cols=259 Identities=18% Similarity=0.236 Sum_probs=185.6
Q ss_pred eeccCCCCceEeeecCCCceEEEEEecc-------CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
+|.-|.++|+.++-+|-.+++|++...+ -.+.||.+....... +...|+ ....+-..+-+.|.|
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~c 128 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINC 128 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceee
Confidence 4567888999999999988899987653 236788775432210 000000 000111245569999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccce---EeccccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
+.|.|++..||+-. |..|.+|+++.+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.+
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMK 204 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchh
Confidence 99999999999885 7779999999876532111 1123566788999999 566 455554 8999999999988
Q ss_pred eeEEe-ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc-eeEEecCCCCceEEEEEecCCCEE-EEEeeCCCC
Q 001396 471 RTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEG 547 (1086)
Q Consensus 471 ~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~ 547 (1086)
+...+ ..|...|..+.|+|+.. .+|++++.||.|++||.+..+ ++..+..|.+.+.++.|+|.-..| ++++.
T Consensus 205 ~~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---- 279 (370)
T KOG1007|consen 205 KNNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---- 279 (370)
T ss_pred hhcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----
Confidence 87666 46889999999987643 689999999999999998765 466888999999999999965554 45543
Q ss_pred ceeEEEEeCCCCe-----------------------------eeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEE
Q 001396 548 ESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIK 597 (1086)
Q Consensus 548 ~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~ 597 (1086)
|..|.+|...+-. .+.++..|. ..|++++|+....++++ -+.||.+.
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEE
Confidence 6667777543211 123444444 89999999988887755 78999988
Q ss_pred EEEcC
Q 001396 598 IWDMN 602 (1086)
Q Consensus 598 iwd~~ 602 (1086)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 76554
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=158.18 Aligned_cols=302 Identities=12% Similarity=0.110 Sum_probs=214.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeee-eeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
|.+-+.+|.+-|.++.||.+|+ +||+|+.|..+++|++..--..++ +++. ..-..|...|.|++|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEE
Confidence 4455789999999999999998 699999999999999864322111 1111 113456789999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-ee--EEe
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT--YSF 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~--~~~ 475 (1086)
....++|.+|..+++|..-|+++.+.+... .-....+.|..+..+|..+ .+++.+.++.|.+||..... .. ..+
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence 999999999999999999999998765421 1112334899999999987 79999999999999987654 22 223
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-------ecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
........++-|+|. ...+|++.+..+-+-+||.+....... +......-.++.|+|+|+.+++.-. .
T Consensus 191 AN~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~ 265 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G 265 (609)
T ss_pred cCCCccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence 334456677778765 346889999999999999886554321 1112223467899999999988654 2
Q ss_pred eeEEEEeCCCCeeeeEEecccc----cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--------------------
Q 001396 549 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 604 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 604 (1086)
..-.+||+-+.++...-..|.. ....+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2345677766443221112221 11346778887664 4899999999999987531
Q ss_pred ---eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 605 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 605 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+..+.+| ...++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 345 ~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 122344444 4457899999999999999999999999754
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=7e-17 Score=152.63 Aligned_cols=308 Identities=16% Similarity=0.188 Sum_probs=200.1
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
...+++|. ..++++.|..++ +|++|..-|.|.+|++.+......+..++. ..|..+..-|+ ..+.+-+.|+.+.
T Consensus 7 ~fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEE
Confidence 34455666 889999998876 599999999999999999988888875543 34777777776 5688889999999
Q ss_pred EEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccc
Q 001396 642 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 721 (1086)
Q Consensus 642 iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 721 (1086)
+|++.....+.. |+-.++++.|.+..-.. ...+....++.-+. +.-.+-..+.+.+.+.....
T Consensus 81 lw~ia~s~~i~i---~Si~~nslgFCrfSl~~-------------~~k~~eqll~yp~r-gsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 81 LWTIAYSAFISI---HSIVVNSLGFCRFSLVK-------------KPKNSEQLLEYPSR-GSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred EEEccCcceEEE---eeeeccccccccceecc-------------CCCcchhheecCCc-ccchhhhhccCccceeEccC
Confidence 999987544332 22334444444322111 00011111111111 11001111111222222222
Q ss_pred cCCcccccceEEEEEe-cCCc--eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCC
Q 001396 722 LPSKVKANKISRLTYN-NGGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 798 (1086)
Q Consensus 722 ~~~~~~~~~i~~l~~s-~~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 798 (1086)
-+.....+.+.+..+. .++. .+++|..+|.+.+||+..+..... -...|... .....|..+
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-------~~~~~kv~---------~~~ash~qp 207 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-------LPQSSKVE---------SPNASHKQP 207 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-------cccccccc---------cchhhccCc
Confidence 2223345566665532 2233 345667789999999887522100 01112111 112248899
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEEccC--ceE--EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 799 VPCFALSKNDAYLFSAS-GGVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
|.++.+.+.-..=++++ +..+..|+++. +.+ .....-.+..|..+.+-| |++++|+++.|+.|+||+.++.+++
T Consensus 208 vlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pL 286 (323)
T KOG0322|consen 208 VLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPL 286 (323)
T ss_pred ceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCch
Confidence 99999987655445555 56788887763 322 222333456788899999 9999999999999999999999999
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 909 (1086)
..++-|.+.|.+++|+||...+|.+|.|++|.+|++
T Consensus 287 AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999986
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=7.3e-18 Score=183.09 Aligned_cols=288 Identities=14% Similarity=0.227 Sum_probs=226.7
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
+.++.+.+|. ..|+|+.|...|.++++|+.|..++||.++++.++....+|.+ .+..++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 4455666776 8999999999999999999999999999999999999987754 6899999999999999999999
Q ss_pred EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCC-cccc
Q 001396 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP-SECQ 718 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~-~~~~ 718 (1086)
|++|.+.++.++..+++|.+.|++++|+|.. +.+.||++++||...... ....
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEeccccccccccCCC
Confidence 9999999999999999999999999998742 567789999999761100 0001
Q ss_pred ccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCC
Q 001396 719 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 798 (1086)
Q Consensus 719 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 798 (1086)
+.. ......+.++.|...+..+++++.++.-..|.+..-. | +...
T Consensus 310 p~~---~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~ 354 (1113)
T KOG0644|consen 310 PLK---FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNL 354 (1113)
T ss_pred CCC---cccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccc
Confidence 111 1123557778888899999999999888887654321 1 2222
Q ss_pred eeEEEeecCC-CEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 799 VPCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 799 v~~l~~s~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
+.-+.++.|- .+.+++- +-.+.+|++.+|...+.+.+|..++..+.++|.+.+...+++.||...|||+..|..++..
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 2222333332 2333443 6779999999999999999999999999999988888889999999999999998777654
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
..-.+.+..-+||+||..++....-|.+.|.....++
T Consensus 435 ~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 435 FIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 4324457778999999999988888999998776544
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=6.7e-16 Score=148.03 Aligned_cols=289 Identities=18% Similarity=0.261 Sum_probs=205.4
Q ss_pred eeeeccCCCCceEeeec--CCCceEEEEEec----cCcEEEEec--CCCceeeeeeeeeeeccccceeeeeeeecCCCcc
Q 001396 321 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 392 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~s--pdg~~lla~gs~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 392 (1086)
+..+..+- .+.++.|| |+.++-||.||. .+.|.|-.+ .+++.+...+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 34444444 78888998 566667999985 244555433 4444443221 258899
Q ss_pred EEEEEECCCCC-----EEEEEeCCCEEEEEEecCCC-ccccceE-----eccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 393 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGS-DARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 393 V~~l~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~-----~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
++.+-|.||.+ +||+++ | .+++|.+...+ .+..... -..+..++++..|+.-... ++.++|-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999873 566653 3 49999997422 1111111 2246679999999887666 79999999999
Q ss_pred EEEeCCCCce---eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCC--CCceEEEEEec-C
Q 001396 462 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSA-N 534 (1086)
Q Consensus 462 ~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~-d 534 (1086)
.|||+++|.. ...+-.|...|..++|.. .....+++.+.||.+|+||++..+.-. .+... ..+...++|++ |
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999743 456778999999999975 345689999999999999999876533 33332 34778888887 4
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCee------
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------ 606 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------ 606 (1086)
-+++++...+ ...|.+.|++. ..++..+++|. +.|+.++|.|.. ..|.+++.|..+.+||+...-.
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 5666665543 34588999885 46778888888 999999999974 5788899999999999976332
Q ss_pred EEEEcCCCCCCCCceEEEec-CCCEEEEEECCCcEEE
Q 001396 607 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 642 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 642 (1086)
+.... ...+|+.+.|++ .+..++++.. +.+.+
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 11222 234689999996 5667777764 34444
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.3e-17 Score=170.65 Aligned_cols=270 Identities=14% Similarity=0.191 Sum_probs=192.9
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
..+|.-|.+.|+.++|.|... .|++++.||++.+|+++....-... ..-+...+.+|.++|-|+++++
T Consensus 287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecC
Confidence 347889999999999999987 5999999999999999431111100 0112223889999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCc-------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+++.+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+.....+ .
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-c
Confidence 999999999999999996642211 112235779999999999999888 799999999999999766555 4
Q ss_pred EeecCC--cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------CCceEEEEEecCCCEEEEEeeC
Q 001396 474 SFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 474 ~~~~h~--~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+|.... +.-.++.+..+ +-...++...-+.--+.++........+... ...+..+...|.+...+++..
T Consensus 432 ~f~~~~e~g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he- 509 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE- 509 (577)
T ss_pred ccCCccccCCcceEeeccc-hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence 443222 22233443211 1012222222222223333333333332211 124667888888888888875
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
++.|+++|..++.++.....|. ..+.++++.|+|.+|++++.|+.+++|.+....+......+
T Consensus 510 ---d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ---DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ---CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 7789999999999999998887 89999999999999999999999999999877666555433
No 190
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.5e-16 Score=156.44 Aligned_cols=294 Identities=11% Similarity=0.077 Sum_probs=211.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc---cccceEe-ccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~-~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|.+.|.++.||.++++||+|+.|..+++|+++..-. .+.+... ..|...|.|++|...++ ++++|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 678999999999999999999999999999999864211 1222111 24567999999998877 89999999999
Q ss_pred EEEeCCCCceeEEeec--CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCC
Q 001396 462 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~ 536 (1086)
...|+++.+.+..+.. ..+.|+.+..+|.. ..|++.+.+|.|.+||.+.... .+.....+.....+.|+|...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999888752 23489999988773 5899999999999999987652 333444555788899999877
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCee-eeE---EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
.|+...... +-+.+||.+.... +.. +.+.+.....-.++.|+|+|+++++.-....-.+||+.+..+...-..
T Consensus 208 ~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 666554433 3378999875432 111 222221112335678999999999877666677888877544322222
Q ss_pred CC-----CCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-----------------------Ceeeeccccccceeee
Q 001396 613 GG-----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL 664 (1086)
Q Consensus 613 ~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~v~~~ 664 (1086)
|. ....+.+++|..|- -+++|+++-.|++|.+... ..+..+++|...++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11 12245667777654 4999999999999998732 2344566666666666
Q ss_pred EEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeee
Q 001396 665 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 709 (1086)
Q Consensus 665 ~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~ 709 (1086)
.|+ |...++++.+-++.+++|..
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eec----------------------CCcceEeccchhhheecccc
Confidence 665 56777888888899999974
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.6e-15 Score=140.22 Aligned_cols=286 Identities=13% Similarity=0.141 Sum_probs=196.2
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.|.+-+++|.+++++++..+|.|.+..+..-.. +.+. ..|+..+ .+..+|+.++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~----------~~gk~~i---v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE----------PPGKLKI---VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC----------CCCCcce---eeccccCCCeeeeeee--hh
Confidence 355567899999999999999999998764311 1110 1111111 1123699999999998 56
Q ss_pred EEEEEeCCeEEEEEccCceE------EEEEc-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 810 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
+|.+++||.|+=|....... +.... ..-..|+++-..|..+.++. ++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 78889999999998753221 11111 12357899999985555555 557999999999999999999
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC----CCCceEEEEecCCCEEEEEeCCe
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL----APSETHIQFHKDQTRFLLVHETH 952 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~dg~~l~~~~d~~ 952 (1086)
+||++.|.+++--.....++||++||+++|||.++++... .+...+..... ..+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 9999999999985555678899999999999999966433 22222221111 1223 45556778999988889
Q ss_pred EEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEE
Q 001396 953 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1032 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1086)
+.+|.+.+.++...+.. ..++..+.|-.| .++++|.-+.|.-|.+. |.+.+.+. .. ....+..+...
T Consensus 229 lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~ 295 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT 295 (325)
T ss_pred eeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence 99999999998876543 667888888654 57778888899999886 44443333 11 11122233344
Q ss_pred CCCCCCEEEEEeCCCcEEEEc
Q 001396 1033 HPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 1033 ~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
+| -..+-.++..+.+.++.
T Consensus 296 ~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 296 SP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred Cc--eEEEEecccceeeeeee
Confidence 45 35677777788887763
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=156.54 Aligned_cols=293 Identities=13% Similarity=0.170 Sum_probs=202.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--CCC-CceE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 527 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~-~~i~ 527 (1086)
.++++-..|+|++||..+|+.+..++++...++.+.|......+.+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6777778999999999999999999999999999999765566789999999999999999877655433 333 3566
Q ss_pred EEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee-eeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCe
Q 001396 528 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 528 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+++..-.++.++++..-...+..|.+||.+..+. ++.+... |...|++++|+|.. +.|++||.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS--H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES--HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh--ccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 6666667888888876556688999999998765 5554432 24899999999975 678899999999999997542
Q ss_pred ----eEEEEcCCCCCCCCceEEEecCC-CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 606 ----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 606 ----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
++.++. ....|..+.|..++ +.+.+-+..++..+|+++.+.+...+......... . ..-...
T Consensus 200 EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d--~--------r~~~~~ 266 (376)
T KOG1188|consen 200 EEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD--L--------RKEDNC 266 (376)
T ss_pred chhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh--H--------Hhhhhh
Confidence 223332 22458889999877 45888888999999999988654433321110000 0 000000
Q ss_pred eeeecCCCCCCcccceec-cccCccceeeeeecCC-ccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 681 SVSVNEDPKEDVKPEISV-EAENKSEVEKPLFARP-SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~-~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
...++.....++...+.+ ...+...++-+....+ ...........+|..-|+++.|...+..+.+|+.||.+.+|..+
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 011111111233333333 3356666666543222 22233334445577788899999899999999999999999853
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.3e-16 Score=153.89 Aligned_cols=277 Identities=15% Similarity=0.173 Sum_probs=193.2
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CCCEEEEEeCCCEEEEEEec
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 420 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 420 (1086)
.+|++-..|+|++||..+|+.+.. +++|...+..++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 578888889999999999988865 667888888899977 46788999999999999999
Q ss_pred CCCccccceEecccc-ccEeEEEecCCCCcEEEEEEe----CCCcEEEEeCCCCce-eEEe-ecCCcceEEEeecccCCc
Q 001396 421 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 493 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 493 (1086)
+......+ .+.+|. .+..+++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87655433 345665 4666676665566 666664 466799999998766 5443 679999999999987 55
Q ss_pred cEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 494 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
.+|++||.||.|.++|+..... +.....+...|..+.|..++ +.+.+.+- .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999876532 22334456679999999988 23444443 4468999999887655544331
Q ss_pred cc---------CCceEEEEEecCCCEEEE-EECCCcEEEEEcC---CCee---EEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 570 LQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 570 ~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
.. ...+.......+....+. ++..+...++-+. ++.. +..+.+ ++..-|+++.|...+..+.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 011111111223334444 3335565555443 3333 333333 23445788889888999999
Q ss_pred EECCCcEEEEECCC
Q 001396 634 IANENRIKILETPE 647 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~ 647 (1086)
|+.||.+.+|..+.
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999999643
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.1e-16 Score=161.90 Aligned_cols=245 Identities=17% Similarity=0.161 Sum_probs=163.5
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCCcceEEEeecccCCccEEEEEEcCCeEEEE
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 508 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 508 (1086)
++.||++.|++++|+.||. +|++|++|-.+.|||.-..++++.+ .+|.+.|.++.|.|..+...+++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 9999999999999999988888777 689999999999999999999999999999999
Q ss_pred EcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC-CEE
Q 001396 509 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI 587 (1086)
Q Consensus 509 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 587 (1086)
|+...+.... + + ...+..+.+..|. ..|..++-.|++ +.+
T Consensus 123 dl~~~~~~~~-------------------------d---~--------~~~~~~~~~~cht---~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 123 DLDSSKEGGM-------------------------D---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHTF 163 (758)
T ss_pred eccccccccc-------------------------c---c--------Cccchhhhhhhhh---hhhhheecCCCCCceE
Confidence 9875322110 0 0 0011222333444 678888888888 678
Q ss_pred EEEECCCcEEEEEcCCCeeEE-E-------EcCCCCCCCCceEEEec-CCCEEEEEECCCcEEEEECCCC-Ceeeecc--
Q 001396 588 LAAGDDHVIKIWDMNKVQLLT-T-------IDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG-- 655 (1086)
Q Consensus 588 ~~~s~dg~i~iwd~~~~~~~~-~-------~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~-- 655 (1086)
.++++||+|+-+|++....-. . .......-...++..+| +..+|++|+.|--.++||.... +....-.
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~ 243 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM 243 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence 889999999999998632110 0 01111122456889999 5678999999999999994321 1111100
Q ss_pred --ccccceeeeEE-ccCCCceecc------ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 656 --VLSDNLRKLSV-NPISTVTGAG------IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 656 --~~~~~v~~~~~-~p~~~~~~~~------~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
.......|+.+ +|.......+ .....++| +|+|.-++..-....|.++++...+......
T Consensus 244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 11111222322 2222101111 11123445 6888777776666778888887655444333
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.3e-14 Score=159.75 Aligned_cols=275 Identities=14% Similarity=0.193 Sum_probs=178.7
Q ss_pred eEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe-CCCEEEEEEe
Q 001396 342 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 419 (1086)
Q Consensus 342 ~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 419 (1086)
++.++...++.|.+||+.+ |+...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 4455667789999999974 33222111 1 1335677899999999987764 5778999999
Q ss_pred cCCCccccceEeccccccEeEEEecCCCCcEEEEEE-eCCCcEEEEeCCC-Cc---eeEEeecCCcceEEEeecccCCcc
Q 001396 420 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 494 (1086)
Q Consensus 420 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~-~~d~~i~iwd~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~~ 494 (1086)
.....+...... ...+....++|+|+++. ++++ ..++.|.+|++++ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222211111 22335678999999994 4444 4588999999864 32 2233322 2345566674 4666
Q ss_pred EEE-EEEcCCeEEEEEcCCCceeEE------ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC--Ce--eee
Q 001396 495 FIF-SISVDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 563 (1086)
Q Consensus 495 ~l~-s~s~dg~i~vwd~~~~~~~~~------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 563 (1086)
+++ +...++.|.+||+++...... ....+.....++|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 665 455679999999986432211 1122345678999999999988763 366899999873 32 333
Q ss_pred EEecccc---cCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 564 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 564 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
.+..... +......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 112234688999999999985 47899999986432 22222221 2356899999999999887
Q ss_pred C-CCcEEEEECC
Q 001396 636 N-ENRIKILETP 646 (1086)
Q Consensus 636 ~-dg~i~iw~~~ 646 (1086)
. +++|.+|+++
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1.6e-14 Score=143.94 Aligned_cols=241 Identities=11% Similarity=0.145 Sum_probs=186.9
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
..+..+.|+.|...|..|+.|| -++|+.+.-.... ........|.-+-|+.. .+.+|+...-+.+++.+.+.+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 4567777999999999999999 7888887644311 11122334666667653 2234444333459999999888
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC---CCceEEEEEecCCCEEEEEeeCCCC
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+..+. ...+|.++.++ .+.|+++=.+. |.|||+++.+...++... ...+.++++++.+.+++.-+.. .
T Consensus 80 ~ICe~~-fpt~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--t 151 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--T 151 (391)
T ss_pred eEEEEe-cCCceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--C
Confidence 888775 56678888873 34677766655 999999999988866544 3356666666677788875432 2
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCc-EEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
.|.|++||..+-+.+..+..|. +.+.+++|+++|.+|+++|+.|+ |||+.+.+|+.+..+.-......|.+++|+|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 6679999999999999999888 99999999999999999999998 6999999999999998665556788999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 001396 627 NGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
++++|++.++.++|+++.++..
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999998864
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=5.3e-15 Score=147.26 Aligned_cols=241 Identities=11% Similarity=0.171 Sum_probs=184.7
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeE
Q 001396 796 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 873 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 873 (1086)
...+..+.|..|...|..|+....++|.................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677799999999999876678888876555333333445677778876 3676666553 5999999988877
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-E--eC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 950 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~d 950 (1086)
..+. ...+|.++.+. .+.|+++=.+. |+|||++.-+ .+.+..........+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 45678888886 55666665554 9999999843 44444443222234666777777789998 3 56
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCc-EEEEEcCCCceeeeeccccccCCCCccCcccceE
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1029 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1086)
|.|.|||+.+-+.+.. +..|.+.+.+++|++||.+|||++..|+ |||+.+.+|+.+.+|+.+.. .+...+
T Consensus 153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence 8899999998888876 5589999999999999999999999997 89999999999999985443 234568
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1030 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1030 ~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
++|+| ++++|++.+..++|+++.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 99999 78999999999999999996544
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.9e-15 Score=144.79 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=129.6
Q ss_pred eeEEEeec--CCCEEEEEeCCeEEEEEccCceEEEEEc-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEE
Q 001396 799 VPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 874 (1086)
Q Consensus 799 v~~l~~s~--dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 874 (1086)
.++-+||| ||..+++.+|++++.||+.+.+....+. .|...|..+.|+|+-..+||+|+.||.|+|||.+. ..++.
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 33445665 8899999999999999999888777665 48888999999996677899999999999999975 46789
Q ss_pred EeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCe
Q 001396 875 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 952 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 952 (1086)
.+.+|...|+++.|+|- .++++++|.|..|.+|...+-.... + +.|-.|..-.-. -...+
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~----q--------------i~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ----Q--------------IEFEDDESESEDEDSEER 314 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc----c--------------cccccccccCcchhhHHh
Confidence 99999999999999985 4778899999999999876522111 1 111111000000 00001
Q ss_pred EEEEEcCCccceeccccCCccCEEEEEEeCCCCE-EEEEECCCcEEEEEcC
Q 001396 953 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~~~Dg~v~vWd~~ 1002 (1086)
++ -+..|. +. .+..|...|.+++||.-..+ +|+-+.||.+.|=.++
T Consensus 315 ~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 315 VK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11 011111 11 25578999999999986654 6788999999886655
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2.8e-14 Score=157.11 Aligned_cols=256 Identities=14% Similarity=0.194 Sum_probs=166.6
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecC-CCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.++++.. .+....++++||+++|++++..++.|.+|++. +|+....... ........++|
T Consensus 27 ~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------------------~~~~~p~~i~~ 87 (330)
T PRK11028 27 LLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------------------PLPGSPTHIST 87 (330)
T ss_pred eeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee------------------cCCCCceEEEE
Confidence 3444442 34688899999999755555568999999996 3433211110 12235678999
Q ss_pred CCCCCEEEEEeC-CCEEEEEEecCCCcc-ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE---
Q 001396 399 SPDGSLLGVAYS-KHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--- 473 (1086)
Q Consensus 399 spdg~~las~~~-d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~--- 473 (1086)
+|+|++|++++. ++.|.+|++++...+ .....+ .+......++|+|+|+. ++++...++.|.+||+.+...+.
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCCcccccC
Confidence 999999988764 789999999743222 221122 22334677899999985 44666678999999997643221
Q ss_pred ----EeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcCCC--ce--eEEecCC------CCceEEEEEecCCCEE
Q 001396 474 ----SFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSL--GA--RVDYDAP------GLGCTRMAYSANGRRL 538 (1086)
Q Consensus 474 ----~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~--~~--~~~~~~~------~~~i~~~~~s~d~~~l 538 (1086)
... .......++|+ +++++++++.. +++|.+|+++.. .. ...+... ......+.++|+|+++
T Consensus 166 ~~~~~~~-~g~~p~~~~~~--pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 166 PAEVTTV-EGAGPRHMVFH--PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred CCceecC-CCCCCceEEEC--CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 12335667885 57788877766 999999999742 21 2222211 1123468899999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC-CCcEEEEEcC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMN 602 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~ 602 (1086)
+++.. +++.|.+|++........+.++.........+.++|+|++|+++.. +++|.+|+++
T Consensus 243 yv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDR---TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecC---CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 98743 3568999998654322222222211134567899999999998775 8999999875
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.1e-16 Score=158.32 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=163.2
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001396 800 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
.+++|+.||..++++. ||++|||++.+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999998888888888999999999999 99999999999 899999999977766552
Q ss_pred --ccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCceeee-eeeeccCCCccCCCCceEEEEecCCCEEEE-Ee
Q 001396 879 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 949 (1086)
Q Consensus 879 --h~~~v~~l~~spdg-----~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 949 (1086)
.......+.|+.|+ ..++....-+.|+.|++........ +..+....+ ..|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 23346678898887 4444555567788888765442111 111222222 25999999999999999 58
Q ss_pred CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 950 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 950 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
||.|-|++..+.+++.-....|...|+.+.|+||.+++++.+.|..+.|..+..
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999888889999999999999999999999999999888765
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.1e-14 Score=162.96 Aligned_cols=198 Identities=17% Similarity=0.147 Sum_probs=148.4
Q ss_pred eecCCCEEEEEe-CCeEEEEEccCceEEEEEcC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEecc
Q 001396 804 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 878 (1086)
Q Consensus 804 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 878 (1086)
|-....+|.+++ -..|+|||.........+.. ....|+++.-+...|.++++|..||.|++||.+.. ..+...+.
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 333333444444 47899999998887777654 44567888776657899999999999999998764 35677888
Q ss_pred ccCC--eEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEE
Q 001396 879 HSKR--VTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 955 (1086)
Q Consensus 879 h~~~--v~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v 955 (1086)
|+.. |..+.+-+.|-- |++|+.||.|++||+..........+.... .....++++..+++...+|+|+.+.|+|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~VH~hapiiAsGs~q~ikI 1329 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTVHEHAPIIASGSAQLIKI 1329 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeeeccCCCeeeecCcceEEE
Confidence 9887 999999987744 999999999999999874322222222111 1112489999999999999987799999
Q ss_pred EEcCCccceeccc------cCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 956 YEAEELTCLKQWF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 956 wd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
|++. |+.+..+. ....+.+.+++|.|---+||+|+.|.+|.||......
T Consensus 1330 y~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1330 YSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9986 44333221 1226678999999999999999999999999887654
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.3e-14 Score=161.48 Aligned_cols=250 Identities=17% Similarity=0.165 Sum_probs=183.3
Q ss_pred CCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc--ccc-eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 389 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 389 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~~-~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
-...|.|++|+| +..++|.|..+|+|.+||+..+... ... .....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 5677888899999999999987652 111 112368899999999765442258999999999999
Q ss_pred eCCCCce------eEEee------cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--------eEEecCCCC
Q 001396 465 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 524 (1086)
Q Consensus 465 d~~~~~~------~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~ 524 (1086)
+++.-.. ..... .-...++++.|.+. +...++.|+.+|.|.--+....+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345788888765 446899999999998743322221 235667888
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEEEEEecCCCEE-EEEECCCcEEEEEcC
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 602 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~ 602 (1086)
+|+++.++|-+..++..+. |..++||... ...++..+..+. ..+.+++|||....+ +++..+|.|.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998877666554 7789999987 566666666665 679999999987655 557789999999997
Q ss_pred CCee--EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 603 KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 603 ~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.... +...... ......+.|+++|+.|++|...|++.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5443 3333333 345678888999999999999999999999743
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.3e-15 Score=166.50 Aligned_cols=235 Identities=13% Similarity=0.119 Sum_probs=162.7
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 426 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 426 (1086)
+..|.|||....... . +..|...+.+.+|||||++||+++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998665422 1 55688899999999999999988653 479999998875322
Q ss_pred cceEeccccccEeEEEecCCCCcEEEEE-EeCCCcEEE--EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE-cC
Q 001396 427 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 502 (1086)
Q Consensus 427 ~~~~~~~h~~~v~~v~~s~d~~~l~l~s-~~~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d 502 (1086)
...+.+| ...++|+|||+ .|+. .+.+|.+.| ||+.++. +..+..+...+....|++ ||+.|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2223333 44689999999 4544 446776555 4666665 455666777777888854 677666554 67
Q ss_pred CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 503 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|...+|+++..........+.. ....|+|||+.++..+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765333222222222 45789999999988764 23777999988764333221 234678999
Q ss_pred CCCEEEEEECCCcEEEEEcC--CCeeEEEEcCCCCCCCCceEEEecC
Q 001396 583 AKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 583 ~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+|++|+.++.++.+.+|++. +|.....+..+.+ .+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999999999988888763 5777777765433 4678889874
No 204
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=8.6e-17 Score=175.46 Aligned_cols=312 Identities=18% Similarity=0.237 Sum_probs=210.3
Q ss_pred ccCCCCC-chHHHHHHHHhHHhhhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCcc
Q 001396 156 LKFPSIK-RQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSML 234 (1086)
Q Consensus 156 ~~~~~~p-~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 234 (1086)
++.|..| +--|..|+-|++++|+.+|+++.++++++|||.+|.|++ |.+..++|-++..+.-..
T Consensus 1004 q~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl~~r 1068 (1516)
T KOG1832|consen 1004 QMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRLGTR 1068 (1516)
T ss_pred cCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcccch
Confidence 3333344 336999999999999999999999999999999999998 777777654433222100
Q ss_pred cCccccccccCCCCCCcccccccCCCCCcccccCCccccCCCCCCcccccCcCCCCCCCCCCCCccccccccccCCCccC
Q 001396 235 TDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 314 (1086)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~ 314 (1086)
..-+ ...++..-++ ..+.+|...
T Consensus 1069 el~~-----------------------------------~y~gV~g~~~----------------dr~~IFSRF------ 1091 (1516)
T KOG1832|consen 1069 ELQS-----------------------------------FYSGVHGNRR----------------DRQFIFSRF------ 1091 (1516)
T ss_pred hhcC-----------------------------------cccccccCcc----------------cchhhHhhc------
Confidence 0000 0000111111 122233322
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
...++++.|+...+|++||-+.+. |++|+..|.|+++++.+|..... ..+|..+|+
T Consensus 1092 ----r~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT 1147 (1516)
T KOG1832|consen 1092 ----RSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVT 1147 (1516)
T ss_pred ----ccchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccc
Confidence 223567889999999999999985 99999999999999999998765 668999999
Q ss_pred EEEECCCCCEEEEEeCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 395 RVVWSPDGSLLGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
.+.-|.||..+.+.+... ...+|++.+- ....+++. .-.++.|+...+. -+.|..-..+.+||++|+..+
T Consensus 1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred cccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHH
Confidence 999999999887765433 5789998763 22222332 2457889877553 333443456899999999887
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
.++-.. .+. ..+ .-....|+|+.++++--+ .
T Consensus 1220 ~tylt~--~~~-~~y-------------------------------------~~n~a~FsP~D~LIlndG---------v 1250 (1516)
T KOG1832|consen 1220 QTYLTD--TVT-SSY-------------------------------------SNNLAHFSPCDTLILNDG---------V 1250 (1516)
T ss_pred HHhcCc--chh-hhh-------------------------------------hccccccCCCcceEeeCc---------e
Confidence 764211 000 000 013457888888776532 4
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+||.+..+.++.|.... ..+ .-.|+|.|..++.-++ |||+++.+++...+.-.. ..+.|+..|..++
T Consensus 1251 LWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1251 LWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMY 1317 (1516)
T ss_pred eeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchh
Confidence 79998888777776544 222 2348999999988775 999999988877664332 5678888777665
Q ss_pred E
Q 001396 633 V 633 (1086)
Q Consensus 633 ~ 633 (1086)
.
T Consensus 1318 a 1318 (1516)
T KOG1832|consen 1318 A 1318 (1516)
T ss_pred h
Confidence 4
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=3.6e-14 Score=161.60 Aligned_cols=256 Identities=13% Similarity=0.095 Sum_probs=183.4
Q ss_pred ecCCCccEEEEEECCCC-CEEEEEeCCCEEEEEEecCCC----ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc
Q 001396 386 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~ 460 (1086)
+..|...|..++.++.. .++++|+.||+|++|+...-. ..+...++.....++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 77799999999988755 999999999999999986422 2233334444567899999999999 6888899999
Q ss_pred EEEEeCCCC--ce-----eEEeec-CCcceEEE-eecccCCccEEEEEEcCCeEEEEEcCCCceeEE--ecCCCCceEEE
Q 001396 461 IKVWDAVTG--SR-----TYSFEG-HGAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 529 (1086)
Q Consensus 461 i~iwd~~~~--~~-----~~~~~~-h~~~v~~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~ 529 (1086)
|++.+++.. +. .+.... ..+.+.+| ++........++.+..-+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 21 111111 22334444 333322224788899999999999988776554 34456789999
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC---CEEEEE-E-CCCcEEEEEcCCC
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---DQILAA-G-DDHVIKIWDMNKV 604 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-s-~dg~i~iwd~~~~ 604 (1086)
+.+|-+.+++.|+. .|.+.+||++=+.++....... ..++..+..+|-. ...+++ + ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999986 7789999999888887776544 3677777776643 345554 3 5788999999999
Q ss_pred eeEEEEcCCCCC-----------------CCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 605 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 605 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
.....+....+. ......++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 777766433110 111223344456689999999999999988653
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2e-15 Score=153.37 Aligned_cols=197 Identities=21% Similarity=0.208 Sum_probs=151.3
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeee
Q 001396 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 920 (1086)
Q Consensus 841 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 920 (1086)
.+++|+. +|..|++|+.||++|+|+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||++.++.... -
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999999888888888899999999999999999999999 79999999973211 1
Q ss_pred eccCCCccCCCCceEEEEecCC---CE-EEE-E-eCCeEEEEEcCCccc-----eeccccCCccCEEEEEEeCCCCEEEE
Q 001396 921 QTPDGVMTLAPSETHIQFHKDQ---TR-FLL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 921 ~~~~~~~~~~~~v~~~~~s~dg---~~-l~~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~s 989 (1086)
..+.+.. .....+.|+.|+ .+ +++ . .-+.|..|++..... .++.. .....|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 1112222 357789999888 33 333 2 334566666543222 11111 12458999999999999999
Q ss_pred EECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 990 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 990 ~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
|+.||.|.|+++.+.+...-+. .. |. ..+..+.|+| |.+.++..+.|.+..|..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk------~a-H~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK------EA-HL--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh------hh-he--eeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999887764433 21 22 3567899999 789999999999999998864
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.5e-13 Score=149.74 Aligned_cols=320 Identities=13% Similarity=0.136 Sum_probs=199.3
Q ss_pred EEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce
Q 001396 496 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 575 (1086)
Q Consensus 496 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 575 (1086)
+++-..++.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.+++... ..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----NP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----EE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----Cc
Confidence 355667899999999999988888776655566889999999999865 6689999999999999987643 67
Q ss_pred EEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 001396 576 SVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIAN-ENRIKILETPES 648 (1086)
Q Consensus 576 ~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~ 648 (1086)
..+++++||++++++. .++.+.++|.++.+.++.+...+ ..+.+..+..+|....+++.-. .+.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 8899999999999865 78999999999999998876432 2234567777887775555544 477777776654
Q ss_pred CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccc
Q 001396 649 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 728 (1086)
Q Consensus 649 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 728 (1086)
..+..... . ..
T Consensus 161 ~~~~~~~i-----------------------------------------------------~----------------~g 171 (369)
T PF02239_consen 161 KNLKVTTI-----------------------------------------------------K----------------VG 171 (369)
T ss_dssp SCEEEEEE-----------------------------------------------------E------------------
T ss_pred cccceeee-----------------------------------------------------c----------------cc
Confidence 22211000 0 11
Q ss_pred cceEEEEEecCCceEEEee-ccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE-----
Q 001396 729 NKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF----- 802 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l----- 802 (1086)
.......|+|++++++++. .+..+-++|...... +..+..|.. .|..+...+
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~---------p~~~~~~~~php~~ 229 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKK---------PHPGPGANFPHPGF 229 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSS---------BEETTEEEEEETTT
T ss_pred ccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeecccc---------ccccccccccCCCc
Confidence 2234567888888876653 346777777554322 111111111 122222211
Q ss_pred ----EeecCCCEEEEE-eCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEE----eCCCeEEEEEcCCceeE
Q 001396 803 ----ALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVI 873 (1086)
Q Consensus 803 ----~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~ 873 (1086)
+.+..+...++. +.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.++|..+.+.+
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVV 307 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCccee
Confidence 122233333222 3456678999999999999877666 7888899 88899887 44589999999999888
Q ss_pred EEecccc-CCeEEEEEeCCCCEEEEEeCC--CcEEEEECCCCceee
Q 001396 874 SKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQT 916 (1086)
Q Consensus 874 ~~l~~h~-~~v~~l~~spdg~~l~s~s~d--g~i~iwd~~~~~~~~ 916 (1086)
.++.... ..+..+.|++||+.+..+..+ +.|.|||..+.+...
T Consensus 308 ~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 308 KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 8876333 358899999999976655443 369999999976544
No 208
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.65 E-value=2e-11 Score=125.39 Aligned_cols=416 Identities=11% Similarity=0.086 Sum_probs=234.0
Q ss_pred CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-------eCCC
Q 001396 340 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH 412 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-------~~d~ 412 (1086)
|.+++.+++.| +..+++.+|+..+ +..|-+-|..-.|+|||+.+|.. ...+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta 107 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA 107 (668)
T ss_pred CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence 55677776653 4455566776554 55688899999999999999983 2234
Q ss_pred EEEEEEecCCCccccceEeccccccEeE-EEecCCCCcEEEEEEeCCCcEEEE----eCCC-CceeEEeecCCcceEEEe
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~s~d~~~l~l~s~~~d~~i~iw----d~~~-~~~~~~~~~h~~~v~~~~ 486 (1086)
.+.+.+.+.|+..+. ++-| .+.+. +-|+|||+ ++++...-.-..-| .+.. |.....+ .-++.+.+.
T Consensus 108 Dly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv 179 (668)
T COG4946 108 DLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIV 179 (668)
T ss_pred cEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEE
Confidence 588888888875442 2223 33333 45999998 67765433222222 1111 1101111 122333333
Q ss_pred ecccCCccEEEEEEcCC------------eEEEEEcCCCc-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 487 PHAKENIHFIFSISVDG------------KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg------------~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+ .|| .++.|-.-- .=++|--..+. .-..+..-.+.|.+-..-.+.-++++ +-+|-+.++-
T Consensus 180 ~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~GnlYS 252 (668)
T COG4946 180 I---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGNLYS 252 (668)
T ss_pred E---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccceEE
Confidence 2 133 222221110 11234322222 11122122223333223222223333 3355677877
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc---CC-C-CCC-CC---ceEE-
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AG-G-GLP-EN---PRIC- 623 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~-~-~~~-~v---~~v~- 623 (1086)
-|+....+.+...-+ .-.+-..+.||++++- +..|.|++||..+..+...-- .. . ... .+ .-+.
T Consensus 253 vdldGkDlrrHTnFt-----dYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyled 326 (668)
T COG4946 253 VDLDGKDLRRHTNFT-----DYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLED 326 (668)
T ss_pred eccCCchhhhcCCch-----hccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhh
Confidence 777654432221111 1223335678887765 345789999998765432211 11 0 000 00 0111
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 624 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 624 ~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
|++ +|.+++..+. |...+.+.-.+..++
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-------------------------------------------------- 355 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-------------------------------------------------- 355 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--------------------------------------------------
Confidence 333 5667776665 444444332221111
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccc-eeEEeeccCCccccCcccccccCCceecCCC
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
.++.+.|+-..+..+++.++.+..|| .+-|++....
T Consensus 356 ----------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------------- 392 (668)
T COG4946 356 ----------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------------- 392 (668)
T ss_pred ----------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---------------------
Confidence 01334455566666777788888887 6777765433
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
+ ..... +.-+.|.++.+++||++++++.+ ..+.+.|+.++.....-+...+-|+..+|+| +++++|-+--+|
T Consensus 393 -e-~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~g 465 (668)
T COG4946 393 -E-VKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEG 465 (668)
T ss_pred -e-EEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcc
Confidence 2 11111 24567999999999999999986 7899999999988766666778899999999 999999988776
Q ss_pred ----eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 001396 861 ----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 900 (1086)
Q Consensus 861 ----~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~ 900 (1086)
.|+++|+.+++....-. ..+.=.+-+|.||+++|..-+.
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 78999999887654433 2222345789999999876543
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=1.6e-12 Score=141.84 Aligned_cols=331 Identities=14% Similarity=0.173 Sum_probs=201.9
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEE
Q 001396 449 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 528 (1086)
Q Consensus 449 ~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 528 (1086)
.+++++-..++.|.+.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677888999999999999999999865544344555 5688899999999999999999999887776544 5678
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----cCCceEEEEEecCCCEEEEE-ECCCcEEEEEcCC
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 603 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 603 (1086)
+++|+||++++++... .+.+.++|.++.+.++.+..... ....+.++..+|....++.. -+.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 56799999999999988765431 12467788888888855554 4558888888876
Q ss_pred CeeEE--EEcCCCCCCCCceEEEecCCCEEEEE-ECCCcEEEEECCCCCeeeeccccc----cceeeeEEccCCCceecc
Q 001396 604 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 604 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~ 676 (1086)
.+.+. .+... .......|+|++++++++ .....|.++|..+++.+..+.... .....+ .+|
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php-------- 227 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHP-------- 227 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EET--------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCC--------
Confidence 65443 33322 235678999999988775 446789999988875554332100 000000 000
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
..+.+.. ....+...++.-...
T Consensus 228 --------------------------------------------------~~g~vw~--~~~~~~~~~~~ig~~------ 249 (369)
T PF02239_consen 228 --------------------------------------------------GFGPVWA--TSGLGYFAIPLIGTD------ 249 (369)
T ss_dssp --------------------------------------------------TTEEEEE--EEBSSSSEEEEEE--------
T ss_pred --------------------------------------------------CcceEEe--eccccceecccccCC------
Confidence 0000110 011111121111111
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE---e-C-CeEEEEEccCceEEE
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTIL 831 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---~-d-g~i~iwd~~~~~~~~ 831 (1086)
.+.+|+..+.+....... .... .-+..+||++++.+. + + +.|.++|.++.+.+.
T Consensus 250 ----------------~v~v~d~~~wkvv~~I~~----~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 250 ----------------PVSVHDDYAWKVVKTIPT----QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp ----------------TTT-STTTBTSEEEEEE-----SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred ----------------ccccchhhcCeEEEEEEC----CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 233445555554555544 2233 667889999999998 3 3 789999999998888
Q ss_pred EEcCC-CCCeEEEEEcCCCCCEEEEEeC-C-CeEEEEEcCCceeEEEec
Q 001396 832 TIMPP-SPTATSLAFNPHDNNVIAIGMD-D-STILIYNARSSEVISKLE 877 (1086)
Q Consensus 832 ~~~~~-~~~i~~l~~s~~d~~~lasg~~-d-g~v~iwd~~~~~~~~~l~ 877 (1086)
++... ...+..+.|++ +|+.+..... . |.|.+||..|.+.+..+.
T Consensus 309 ~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 87532 23599999999 6765544433 3 379999999999988876
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.2e-14 Score=159.30 Aligned_cols=297 Identities=15% Similarity=0.202 Sum_probs=207.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS 403 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 403 (1086)
+.......+.|+|-.. .++++.....|+|||++.++.+..+. .. ......|+.+.+-. |..
T Consensus 1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~-----n~-----------~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFD-----NG-----------AFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceecccc-----CC-----------CCCCCccceeeeecccchh
Confidence 3344577888999887 47777767889999999998875421 11 11236788888864 667
Q ss_pred EEEEEeCCCEEEEEEec-CC-Ccccc---ceEeccc----cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 404 LLGVAYSKHIVQLYAYH-GG-SDARQ---QLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~-~~-~~~~~---~~~~~~h----~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
++.+|+.||.|+||+-- .+ +..+. ...+.++ .+.=.-+.|-.... .|+++|.-..|+|||+.....++.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence 89999999999999743 22 11111 1111111 11113467777666 566666688999999998888777
Q ss_pred eec-CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCc--eEEEEEecCCCE-EEEEeeCCCC
Q 001396 475 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG 547 (1086)
Q Consensus 475 ~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~d~~~-l~~~~~~~~~ 547 (1086)
+.. ....|+++.-.-. .|..+++|..||.|++||.+.... +..+..|... |..+.+-+.|-. |++++.
T Consensus 1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence 643 4456777765433 468999999999999999876543 4466667665 999999887765 888876
Q ss_pred ceeEEEEeCCCCeeeeEEe--cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-----CCCCCCCc
Q 001396 548 ESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----GGGLPENP 620 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~ 620 (1086)
+|.|++||++.......+. .|..-.+..+++..++....+++|+. +.|.||++...+ +..+.. ......+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcc
Confidence 6679999999752222211 11101134899999999999999988 999999986543 332221 12234678
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+++|+|..-++|+|+.|.+|.||.....
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999987654
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=7.7e-13 Score=129.45 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=171.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-----CCcEEEEeC
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 466 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-----d~~i~iwd~ 466 (1086)
...+++|+.|..-+++|..+| .+||+++--+... .-.-+.+.+.-+...--.+.+.||-|+. -+.+.|||-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 445599999999999998888 8999987532211 1111222222222222334334444433 257999997
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeEEecCCCC--ceEEEEEecCCCEEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGL--GCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~ 543 (1086)
...+++.++. ...+|.++.+.. + .|++ -.++.|.+|.+. +.+....+..... ...+++-+.+..+|+.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 7888888886 778999999843 2 3444 356789999987 4555555544332 3444443334444444332
Q ss_pred CCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCCc-EEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 544 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
.-|+|++-|+...+. ...+..|. ..|.+++.+-+|..++++|..|+ |||||..+|.++..+.-......+.
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 257899999876554 45667777 99999999999999999999998 7999999999999998666667799
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+++|||+..+|++.++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998864
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=3.7e-14 Score=157.94 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=189.2
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
....+.-. .+|+|++|+|....++|.|+.+|.|.+||+..+..... ..-......|..+|..+.|-
T Consensus 235 Pe~~~~~~-s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 235 PELVLESP-SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEecC-CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEe
Confidence 33444443 49999999999888999999999999999998776311 01112256799999999997
Q ss_pred CCCC--EEEEEeCCCEEEEEEecCCCccccceEec---------cccccEeEEEecCCCCcEEEEEEeCCCcEEEEe---
Q 001396 400 PDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--- 465 (1086)
Q Consensus 400 pdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd--- 465 (1086)
.+-. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|.-=+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccC
Confidence 7544 49999999999999886543311111111 11236899999988776 688899999887733
Q ss_pred CCCCc-----eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeEEecCCCCceEEEEEecCCCEEE
Q 001396 466 AVTGS-----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 466 ~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
...+. .+..+..|.++|+++.++|-.. ..+++++ |-++++|.-. ...+...+..+...+++++|||-.-.++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 22222 2335667899999999876543 2344444 9999999887 6666777777777899999999877666
Q ss_pred EEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001396 540 SCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
++. +++|.|.+||+.... ++.+..... .....+.|+++|+.+++|...|++.+|++..
T Consensus 458 ~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 458 ATV---DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEE---cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 655 348899999987543 333333222 5677888999999999999999999999864
No 213
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=2.2e-14 Score=137.82 Aligned_cols=247 Identities=13% Similarity=0.146 Sum_probs=173.9
Q ss_pred CCCCCeeEEEeecCCC----EEEEEeCCeEEEEEccCc--eEE--EEE-----cCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 794 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTF--KTI--LTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~----~l~~~~dg~i~iwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
.|..+++.+.|.|+.. -+...++..+|+|.+... +.. ..+ ..+..++++..|+.-+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3889999999999863 233445678999998732 211 111 235578999999988889999999999
Q ss_pred eEEEEEcCCce---eEEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEE
Q 001396 861 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 936 (1086)
Q Consensus 861 ~v~iwd~~~~~---~~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 936 (1086)
+..|||+.++. ...++-+|..+|..++|+.++ +.+||+|.||.||++|+...+-.+ -....+..+ .+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~----~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPS----TPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCC----Ccceee
Confidence 99999999873 467788999999999999865 679999999999999998754222 111222212 357889
Q ss_pred EEecCC-CEEEE-E-eCCeEEEEEcCCccceeccccCCccCEEEEEEeCC-CCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 937 QFHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 937 ~~s~dg-~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
+|++.. +++|+ . ....|.+.|++.......-+.+|.+.|..++|.|. ...|.|+|.|..+.+||+.+.-......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998865 56666 4 44679999998766544447789999999999995 46899999999999999986533111111
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE
Q 001396 1013 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1051 (1086)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~v 1051 (1086)
...... +. .+.-+.|+|..++-++.+. +..+.+
T Consensus 329 ilay~a---~~--EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 329 ILAYTA---GG--EVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhhhc---cc--eeeeeeecccCCCEEEEEe-cCeeeE
Confidence 111111 11 2335677765556666544 334333
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=8.9e-14 Score=158.50 Aligned_cols=274 Identities=14% Similarity=0.190 Sum_probs=189.4
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..++..|+.|+..|..++.+++..-++++||.||+|++||...-..-. ..++ ....+..-+..+.++.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVT 1105 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEE
Confidence 467889999999999999988773479999999999999986522110 0000 0011333568899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCcccc----ce--EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ----QL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~----~~--~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
..+.|..+|+++.||.|++.+++-.+.-+. .. .......-|..-+|....+...++.+..-+.|..||+.+...
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 999999999999999999999876221110 00 111122234444555544433678888889999999987766
Q ss_pred eEEee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-CCceEEEEEec---CCCEEEEEeeCC
Q 001396 472 TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSA---NGRRLFSCGTSK 545 (1086)
Q Consensus 472 ~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~---d~~~l~~~~~~~ 545 (1086)
+.+++ ...+.|++++.++ .+.++++|+..|.+.+||++-...+..+..+ ..++..+..+| .....++++..
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~- 1262 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS- 1262 (1431)
T ss_pred HHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc-
Confidence 65543 3457899999854 5679999999999999999998888766543 34677776665 33566665542
Q ss_pred CCceeEEEEeCCCCeeeeEEeccc-c---------------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQ-L---------------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~-~---------------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 607 (1086)
+.+.|.+|++.+|.....+.... . +.-....+.+...+..+++|+.|..|+.||.......
T Consensus 1263 -~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1263 -SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred -CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 36679999999997766665431 0 0011223344445678899999999999998765544
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.2e-14 Score=162.54 Aligned_cols=230 Identities=18% Similarity=0.195 Sum_probs=151.9
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
+......+.+..|...+...+|||||++ ||..+.+ ..|.+||+.+|+...... +.+|
T Consensus 190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~-- 249 (429)
T PRK01742 190 DYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH-- 249 (429)
T ss_pred CCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc--
Confidence 3334445677888889999999999997 5555543 369999998886432111 2333
Q ss_pred cEEEEEECCCCCEEEEEe-CCCEEEEE--EecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 392 SVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
..+++|||||++|++++ .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||++..
T Consensus 250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 34689999999998875 57765555 6655542 2 35567777889999999995 233444678888887643
Q ss_pred C-ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 469 G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 469 ~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
. .....+ .+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||+++++++.++.
T Consensus 324 ~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~- 394 (429)
T PRK01742 324 SGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL- 394 (429)
T ss_pred CCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-
Confidence 2 222333 3433 34455 55778888887765 45599988765433222 23356789999999999875322
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 583 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 583 (1086)
...+.+++ .+|..++.+..+. +.+...+|+|-
T Consensus 395 ~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 395 GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 22334444 3567777787666 67888889874
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.4e-13 Score=133.72 Aligned_cols=288 Identities=16% Similarity=0.159 Sum_probs=190.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-CCEEEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~ 408 (1086)
.+..++|++.-- -+|++..|-.|+|||-.... ... +-......|+|++|-|. ++-||.|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~-pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTC-PTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCC-Cce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 677888888554 37888999999999976622 211 01224578999999995 4677888
Q ss_pred eCCCEEEEEEecCCCccc-----------cceEeccccccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEee
Q 001396 409 YSKHIVQLYAYHGGSDAR-----------QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~-----------~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~~~~~~~~~~ 476 (1086)
+..| |.||.....-... +.....+| .+|+++.|.+||. .+++++. |..|.|||..+|..+....
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 7777 9999875321111 11223355 6899999999999 6777764 6689999999998776554
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
...+.+.-+.|+| |+.+|++++-|+..++|.....-.........+.|...+|+|+|++|+..... ...++-...
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 4567788889955 77799999999999999655444444444455599999999999988765531 222322211
Q ss_pred C--CCee-----------e------eEEecccccCCceEEEEEecCCCEEEEEECC--------CcEEEEEcCCCeeEEE
Q 001396 557 S--EGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 557 ~--~~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 609 (1086)
. .+.. + ....+...-.+++.+++|.|.|.++++.-.. +.|.+||.+.--....
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 1 1100 0 0111111113678899999999999985432 3477788765444433
Q ss_pred EcC-CCCCCCCceEEEec---CCCEEEEEECCCcEEEEECC
Q 001396 610 IDA-GGGLPENPRICFNK---NGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 610 ~~~-~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~ 646 (1086)
... .........++|+| ++.+|.++-..|.+.-|++.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 311 11112245677777 67788888788888877654
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-12 Score=140.12 Aligned_cols=518 Identities=12% Similarity=0.132 Sum_probs=307.6
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc------------cccceEeccccccEeEEEecCCCCcEEEEEEe
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 456 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~ 456 (1086)
......|++|+....|+|+|+.||.++|..+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 446788999999999999999999999998875432 112235789999999999998888 789999
Q ss_pred CCCcEEEEeCCCCceeEEee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC
Q 001396 457 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 457 ~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d 534 (1086)
.+|.|.||-+-.|.-...+. ...+.|.+++| +.||..+...-.||.|.+=.++.. .+.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeeccc
Confidence 99999999988886554332 24466888888 558889999999998877655432 22222222333457889999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCe-------eeeEEec-ccccCCceEEEEEe--------cCCCEEEEEECCCcEEE
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 598 (1086)
.+.++.+-. .+.+.++|.+..- +.....+ .......|..+.|. |+...++.+-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887765 4568899866421 1111111 01011235555553 57889999999999988
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceecccc
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 678 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 678 (1086)
-.-.+......+... -.+..+.|+++|..|++++.+..- ... ..++.+.|-
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da-----~~~----------~d~n~v~Fy----------- 294 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDA-----DEP----------TDSNKVHFY----------- 294 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccc-----cCc----------cccceEEEe-----------
Confidence 765544333333322 236788999999999999875321 000 001111110
Q ss_pred CCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 679 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 679 ~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
+|-|+.+ |++++ ....|+++.|-..|-+++. ..|+.|.+=++.
T Consensus 295 ----------sp~G~i~------gtlkv--------------------pg~~It~lsWEg~gLriA~-AvdsfiyfanIR 337 (1189)
T KOG2041|consen 295 ----------SPYGHIV------GTLKV--------------------PGSCITGLSWEGTGLRIAI-AVDSFIYFANIR 337 (1189)
T ss_pred ----------ccchhhe------EEEec--------------------CCceeeeeEEcCCceEEEE-EecceEEEEeec
Confidence 1112111 11000 1233444555444433222 223333332222
Q ss_pred CCcc----------ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEc-cC
Q 001396 759 RNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV-MT 826 (1086)
Q Consensus 759 ~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~-~~ 826 (1086)
.+-. ...+.......+.+||..+.+.... .-....+++++.+--.|+.-. +|.+.-++. ++
T Consensus 338 P~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~ 410 (1189)
T KOG2041|consen 338 PEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN 410 (1189)
T ss_pred ccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCCcchhhhhc
Confidence 1110 0111111223466788777654433 223456778877766666554 466554422 22
Q ss_pred ceEEEEEc-----CC--C---CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------------------------
Q 001396 827 FKTILTIM-----PP--S---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------------------------ 872 (1086)
Q Consensus 827 ~~~~~~~~-----~~--~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------------------------ 872 (1086)
...+..+. +. . ..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 411 ~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga 488 (1189)
T KOG2041|consen 411 RSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGA 488 (1189)
T ss_pred ccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccch
Confidence 22211111 00 1 1122222222 56677777766 578887643211
Q ss_pred --------EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 873 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 873 --------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
..++.|..++|.+++.| .++|..+-..|.|.-+.+....... ...- ...+..++.+.+...
T Consensus 489 ~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n-----~y~~----n~~~y~~~lNCnstR 557 (1189)
T KOG2041|consen 489 QDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN-----SYPV----NPSIYSIKLNCNSTR 557 (1189)
T ss_pred hhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee-----cccc----CchheeEeeccCcch
Confidence 13445666788888876 5788899999999999998743222 2111 135889999999999
Q ss_pred EEE-EeCCeEEEEEcC---CccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 945 FLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 945 l~~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
+|+ -.-|.+.+.|+. +|..+.-+.......|+.+.|..|+..+++--..-.++|++-
T Consensus 558 lAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 558 LAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred hhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 988 456777777765 455554445555778999999988877665544445666653
No 218
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=5.8e-15 Score=151.78 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=224.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
|.+|.+.|..|.|+..|..|++|+.|..|.+||+.++...... ..+|...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7889999999999999999999999999999999988754432 34899999888898875544799999999999876
Q ss_pred CC-CCce--eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC---CCC---ceEEEEEecCCC
Q 001396 466 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGL---GCTRMAYSANGR 536 (1086)
Q Consensus 466 ~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~---~i~~~~~s~d~~ 536 (1086)
+. +|.+ ...+..|.++|..++.-|. ....|.+++.|+.+.-.|++.......+.. +.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 4433 3455679999999998654 345799999999999999987665433321 222 467888888766
Q ss_pred -EEEEEeeCCCCceeEEEEeCCCCee------eeEEeccc---ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--C
Q 001396 537 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 604 (1086)
Q Consensus 537 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~ 604 (1086)
.+++++. +..+++||.+.-.. +..+..+. ...-.|++++|+.++.-+++...|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5556554 66889999764221 22332221 1124689999998988899988999999995442 2
Q ss_pred ----------eeEEE-EcCCCCCCCCceEEE-ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 605 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 605 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
..... +.+|.....|..+-| .|...++++|++-|.|.||+-.+++.+..+.+...-|+|+.-+|.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~--- 447 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH--- 447 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC---
Confidence 11222 455655555777765 578899999999999999999999999999988888888887754
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
-..|++.+-|..|+||...
T Consensus 448 -------------------~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 448 -------------------LPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -------------------CchhhccCCccceeeecCC
Confidence 4568899999999999863
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=1.6e-13 Score=134.08 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=176.1
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC-CC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-VT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~-~~ 468 (1086)
-.+|+|.||++|+..+|.+.....|.||.....+......++..|...|+.++|+|.++ .|++|+.|..-++|.. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 47999999999999999999999999999999887777788999999999999999998 7999999999999998 33
Q ss_pred C--ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee----EEecCCCCceEEEEEecCCCEEEEEe
Q 001396 469 G--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 469 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+ ++...+..++...+++.|+|.+ ..+++|+....|.||=++....= ..-......|.++.|+|++-+|++|+
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 3445566789999999997654 58999999999999987765432 23344556799999999999999998
Q ss_pred eCCCCceeEEEEeC-----CC-------------CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 543 TSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
. |+..+++.. +. |+++..+... .+.+..+.|+|+|..|+-.+.|+++.+-|....
T Consensus 166 ~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~---ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 166 T----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS---GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred c----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC---CCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 6 445666532 21 1223333322 378999999999999999999999999998776
Q ss_pred e-eEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 605 Q-LLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 605 ~-~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
. ....+.... -+..++.|-.+...+
T Consensus 239 ~~~v~~~~~~~--lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 239 SERVQSVATAQ--LPLLSVSWISENSVV 264 (361)
T ss_pred chhccchhhcc--CCceeeEeecCCcee
Confidence 4 233222211 234556665544333
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.6e-13 Score=134.00 Aligned_cols=241 Identities=14% Similarity=0.097 Sum_probs=181.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
++--.++|+|.+|++|+. .+|++-....|.||.......-. ..+.+..|...|+.+.|+|.+.
T Consensus 6 ~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~sn 68 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSN 68 (361)
T ss_pred eeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCC
Confidence 344456999999999998 58998888999999987765211 1223778999999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----EEeecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~ 479 (1086)
.|++|+.|..-+||....+...++...+..|...++++.|+|.++ .+++||.-..|.||=.+...-= +.-+.+.
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 999999999999999966666666667888999999999999999 7999999999999876644321 2223467
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEc-----CC-------------CceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLY-----DS-------------LGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~-----~~-------------~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
..|+++.|++ ++-+|++|+.|+..|++.. +. +.....+....+.+..+.|+|+|..|+-.
T Consensus 147 Stv~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 147 STVTSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred cceeeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 7899999976 4568999999999999953 11 11122334566789999999999999988
Q ss_pred eeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEecCCCEEEEEECC
Q 001396 542 GTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 593 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 593 (1086)
+- +..+.+-|..... .+......+ -+..++.|-.+. .+++++.|
T Consensus 225 ~H----ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 225 GH----DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred cC----CCceEEeecCCCchhccchhhcc---CCceeeEeecCC-ceeecCCC
Confidence 76 6678888876654 233333323 466777776553 45555555
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=150.88 Aligned_cols=245 Identities=13% Similarity=0.187 Sum_probs=171.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+.+.|.||++-|+|++|+.||. +|++||.|-.+.|||.-..+.++. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 4456899999999999999998 799999999999999987777654 367899999999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEecCCCc-------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 400 P--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 400 p--dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
| +.+.+++|..|..|+++|+...+. ..+...+..|..+|..++-.|++.. .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 578899999999999999985221 2233356689999999999999966 79999999999999997532
Q ss_pred e-eE---------EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE----E-ecCCCCceEEEE-EecC
Q 001396 471 R-TY---------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSAN 534 (1086)
Q Consensus 471 ~-~~---------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~-~~~~~~~i~~~~-~s~d 534 (1086)
. .. .+...--...++.++|. +..+|++|+.|-..++||.+...... . ...+.....++. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1 11 11111123466777776 44699999999999999953211111 0 011111222222 2222
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
+- .. ..|..... . ..++.+.|+|+|.-|+..-....|+++|+..++.....
T Consensus 261 hl----kn--------------~~gn~~~~----~---~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY----I---TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc----e---eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 21 00 00100000 0 24667889999998888766678999999987766544
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.6e-13 Score=142.50 Aligned_cols=284 Identities=14% Similarity=0.189 Sum_probs=207.0
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
+|...-+.|..||||+|++|+|..--.|++||+..-.+...+.+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 56668899999999999999999999999999987665543221 23456666667777777
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
+.-..|.+|.+-.-. |..... .+ ...-.+++++.-... |+.++....|+-++++.|+.+..|....+.++++
T Consensus 110 v~L~~DR~IefHak~-G~hy~~--RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKY-GRHYRT--RI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhc-Ceeeee--ec---CcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 777788877664322 111100 01 111234555544443 3344445579999999999999998888999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC------CC-----ceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
.+++. ..+|++|+.+|.|.+||.+.......+... .+ .|+++.|+.+|-.+++|+. .|.+++|
T Consensus 182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 88653 358999999999999999887765544322 12 4899999999999999987 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCC--CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
|+++.+++..-.... .-+|..+.|.+.+ +.+++ .....++|||-.+|+....+... ..++.+|+-|++.+++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence 999988765543222 4688999997763 33443 34567899999999999888644 3489999999999999
Q ss_pred EEECCCcEEEEECCCC
Q 001396 633 VIANENRIKILETPES 648 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~ 648 (1086)
++-.++.+..|=+...
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9999888887766543
No 223
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.59 E-value=6.4e-09 Score=126.20 Aligned_cols=537 Identities=10% Similarity=0.110 Sum_probs=300.2
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEE----EecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
..+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 11 2234566899999999999 56656657777765
Q ss_pred eCC---------------C--------CceeEEeecCC------------------cce----EEEeecccCCccEEEEE
Q 001396 465 DAV---------------T--------GSRTYSFEGHG------------------APV----YSLCPHAKENIHFIFSI 499 (1086)
Q Consensus 465 d~~---------------~--------~~~~~~~~~h~------------------~~v----~~~~~~~~~~~~~l~s~ 499 (1086)
+-. . |+.-..|.|.. +.+ ..+.+++.+||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 310 0 11111111100 001 12334447899999988
Q ss_pred Ec---C---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc-ccC
Q 001396 500 SV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQH 572 (1086)
Q Consensus 500 s~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~ 572 (1086)
+. . ..+|||+-+ +..........+--.+++|-|.|+++++... ......|..|. ++|-.-..|.... ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 75 3 479999754 3333333333444567899999999998875 33355677776 4454444444321 123
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeE--EEEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEEECCCCC
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
..|..+.|++|+..|+..-.|. |.+|...+..-. +.+..... ..+..+.|+|. ...|.+.+.+|.+..++..-..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 6799999999999999877655 999999887643 33333222 23455999994 5567777777888776544110
Q ss_pred eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee---ecCCccccccccCCcc
Q 001396 650 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL---FARPSECQSLLLPSKV 726 (1086)
Q Consensus 650 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~---~~~~~~~~~~~~~~~~ 726 (1086)
. .++.. .|+..-.+..-....+.+-.+. ...|.....+.
T Consensus 383 ~---------------~s~~~------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~----- 424 (928)
T PF04762_consen 383 S---------------RSPGS------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE----- 424 (928)
T ss_pred E---------------ecCCC------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----
Confidence 0 00000 0100000101111122222211 11222222232
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
-...|..++|++++..+++...||.+.+|.++...............+.. . . ...... ......+..++|..
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~--~~~~~~~~~~~~~~ 496 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL---D--S-MDISDS--ELPLGSLRQLAWLN 496 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc---c--c-cccccc--ccccccEEEEEEeC
Confidence 34579999999999989999999999999876543211000000000000 0 0 000000 01345678888888
Q ss_pred CCCEEEEEeC----CeEEEEEccCc---eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-EEEecc
Q 001396 807 NDAYLFSASG----GVISLYIVMTF---KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEG 878 (1086)
Q Consensus 807 dg~~l~~~~d----g~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~ 878 (1086)
+...++.... +.+.++++... ............+..+...+ +...++.-..+|.+...+...... +..|..
T Consensus 497 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~ 575 (928)
T PF04762_consen 497 DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ 575 (928)
T ss_pred CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCC
Confidence 8877777653 46888887433 23333333445566666665 444466677799888776654322 223332
Q ss_pred ccCCeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEE-EEeCCeEE
Q 001396 879 HSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLA 954 (1086)
Q Consensus 879 h~~~v~~l~~spdg~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~d~~i~ 954 (1086)
-...+. +....+.. .++.-+..|.+++ ++ . .+. ..+++.++ .+.+|+ +.....++
T Consensus 576 ~c~~~~-~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 576 PCPWME-VCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLK 634 (928)
T ss_pred CCcEEE-EEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEE
Confidence 222222 23333333 4554455554443 22 1 111 13555555 344554 46777788
Q ss_pred EEEcC-CccceeccccCC----ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 955 IYEAE-ELTCLKQWFPIS----SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 955 vwd~~-~~~~~~~~~~~h----~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
..++. .-..+......+ ...+ .--..|..|+++-....=.|..++.|.+-
T Consensus 635 fv~L~~~~~~l~~~~~~~~~~~de~~---R~VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 635 FVHLNSSVEDLEIPPDSPENSYDERC---RRVERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred EEECcCchhhcccccCcccccccccc---ccCccCCEEEEEeCCCceEEEEcCCCchh
Confidence 88887 111111111111 1122 22346778887766556667788888775
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.7e-13 Score=142.78 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=125.6
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCceEEEEEc----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001396 805 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 869 (1086)
Q Consensus 805 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------- 869 (1086)
.+++--+..+- -|.+.+.|....+..+.+. -....++|+.|-|.+...+.++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45565666665 4888888875422221111 12368999999996667777788899999997531
Q ss_pred ----ce--------------eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCC
Q 001396 870 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 931 (1086)
Q Consensus 870 ----~~--------------~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 931 (1086)
+. ++..+.--.+.|...+|||||++||+.+.||.+||+|..+.+ .+-..+... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578889999999999999999999999999844 233333333 3
Q ss_pred CceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC
Q 001396 932 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 982 (1086)
Q Consensus 932 ~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 982 (1086)
...|++|||||+||++ |.|.-|.||.+...+.++. -.+|..+|+.++|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6889999999999988875 668999999999987
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=9.3e-15 Score=149.34 Aligned_cols=273 Identities=18% Similarity=0.181 Sum_probs=213.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
....+.|+.+|++ ++.|+..|.|..+|+.++++.....+ ...|..+.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV--------------------METVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeeeh--------------------hhhhhhhhhhcchHHHHhhh
Confidence 6788999999997 56667779999999999998876443 26889999999999999884
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
...++|||-..- .+. .+..| ..|..+.|.|--- +|++++..|.++--|+.+|+.+..+..-.+.+..++-+|
T Consensus 190 -K~y~yvYD~~Gt-ElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNGT-ELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCCc-EEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 556999996653 233 33333 4689999999766 899999999999999999999999988888888888755
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
- ...+-+|...|+|.+|.....++...+..|.++|.++++.++|+++++.+. |..+.|||++.-..+.++.. .
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 4 358889999999999999999999999999999999999999999999987 77899999998877666665 2
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEE-cCCCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.+...+++|..| +++++....+.||. .-.+. .....-.|.-...|..+.|.|-...|-+|...|.-.+.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 467788888765 55666666899994 32221 11111122222368899999988888887776654443
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=5.1e-11 Score=135.04 Aligned_cols=276 Identities=15% Similarity=0.138 Sum_probs=189.5
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC--ccEEEEEECCCCCEEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG--VSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~spdg~~las 407 (1086)
++.+.++-. +|||| |+ .-.|.+||+..+..+.... +...+..|. ..+.+ .+.++++
T Consensus 9 ~l~~~~~~~--~~lla-g~-gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~l-----~~~~~v~ 66 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLA-GS-GPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVKL-----LSGKIVT 66 (967)
T ss_pred cccchhhcc--ceeee-cC-CCceEEeeCCchhHhhhhh-------------hhccccccccccccee-----ccceEEE
Confidence 344444444 46554 33 3679999999988775311 111133441 11111 2345555
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce--EE-
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YS- 484 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v--~~- 484 (1086)
+..-+.+..=+..-.. +..-.+.|....+..+.+ .++.+..++.+.+||...+..+..+.. .... .+
T Consensus 67 ~~~~~~v~~~~~~~~~-------~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~ 136 (967)
T KOG0974|consen 67 CAKSDEVYVKEASNQI-------IERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSS 136 (967)
T ss_pred EEeecceeecchhhhh-------hhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCC-CceEEEEeE
Confidence 5443333332222111 112233444466666667 577777789999999888877766643 2222 11
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee-
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR- 563 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~- 563 (1086)
+.+-.+.+.-++++|+.-+.|.+|+.........+.+|.+.+.++.++-||+++++++. |..+++|++++++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 22223445568999999999999998855555568899999999999999999999997 7789999999988776
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
..-+|. ..+..++|.|+ .++++++|-+.++|+... ..+..+..|.. ..+..++..++...+++++.|+.+++|
T Consensus 213 ~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 213 TGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred cccccc---ceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhh
Confidence 555666 89999999998 899999999999997654 44446665544 458999999999999999999999999
Q ss_pred ECCCC
Q 001396 644 ETPES 648 (1086)
Q Consensus 644 ~~~~~ 648 (1086)
++...
T Consensus 286 ~l~~r 290 (967)
T KOG0974|consen 286 DLNGR 290 (967)
T ss_pred hhhcc
Confidence 98754
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=9.5e-13 Score=128.81 Aligned_cols=238 Identities=12% Similarity=0.153 Sum_probs=169.2
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCC--CCeEEEEEcCCCCCEEE-EEeCC------CeEEEEEcC
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNAR 868 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~~ 868 (1086)
....++|..|...++++.+...+||+.+..+.......+. -.+..+-|-. ++|| +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEecc
Confidence 3455999999999999999889999998755433332222 2233333432 3444 44433 489999966
Q ss_pred CceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec--CCCEEE
Q 001396 869 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFL 946 (1086)
Q Consensus 869 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~ 946 (1086)
..+++.++. ...+|.++.+++| .+|+.- .+.|+||.....-. ....+.+..... . -++..| +-.+||
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NPk----G--lC~~~~~~~k~~La 152 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNPK----G--LCSLCPTSNKSLLA 152 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCCC----c--eEeecCCCCceEEE
Confidence 677777777 6788999999876 455443 56799999885321 122232222211 1 233444 333444
Q ss_pred E-E-eCCeEEEEEcCCccc-eeccccCCccCEEEEEEeCCCCEEEEEECCCc-EEEEEcCCCceeeeeccccccCCCCcc
Q 001396 947 L-V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSC 1022 (1086)
Q Consensus 947 ~-~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~ 1022 (1086)
. | .-|.|+|-|+...+. .......|...|.+++.+-+|..+||+|..|+ |||||..+|..+.+++.+.
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-------- 224 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-------- 224 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC--------
Confidence 4 4 458999999986665 23457789999999999999999999999998 8999999999999988332
Q ss_pred CcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1023 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1023 ~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
+.....+++|+| +...||++++.|+|+++.+.+..
T Consensus 225 d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 DRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred chheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 223356999999 78999999999999999997755
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.2e-12 Score=148.01 Aligned_cols=238 Identities=10% Similarity=0.121 Sum_probs=157.4
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC---CCEEEEEEecCCCcccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 427 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 427 (1086)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|++|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887654332 3446678999999999999997642 4579999998876322
Q ss_pred ceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC-Ce
Q 001396 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 504 (1086)
Q Consensus 428 ~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~ 504 (1086)
+....+.+..++|+|||+.+ +++.+.++ .|.+||+++++... +..+...+....|+ +||+.|+..+.+ +.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence 22233345578999999952 33334444 58999998887654 43444566677774 577777766654 44
Q ss_pred EEEE--EcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 505 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
..+| |+.++... .+...........|+|||++++..+.. ++...|++||+.+++.. .+... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCC----CCCCCceECC
Confidence 4555 55554433 333334445678999999999887643 23567999999888644 33321 2234678999
Q ss_pred CCCEEEEEECCCc---EEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 583 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 583 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||++|+.++.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 9999999887764 677777 455555555432 2467788876
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=1.8e-11 Score=138.66 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=153.7
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|....+.-+.+ .++.++.+..+.|||...+....... .+.+. --....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er~--------~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDERC--------TLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCceE--------EEEeEEEEeccCcEEEEEecc
Confidence 444466666666 48888889999999998877664311 00000 001223355688888999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeecCCcceEEEeec
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 488 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~ 488 (1086)
.-+.|.+|+....+... .+.+|.+.|.++.|+.||+ ++++.|+|.++++|++++++.+. ..-+|+..|..++|.
T Consensus 153 v~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998433211 4789999999999999999 89999999999999999998876 667899999999996
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
++ .+++++.|.+.++|+.+..... .+..|. ..+..++..++.-.+++++. |+.+++||+...
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 54 8999999999999976544433 455544 47899999888888888886 777999997653
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.7e-12 Score=148.00 Aligned_cols=237 Identities=13% Similarity=0.064 Sum_probs=161.8
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC---CCEEEEEEecCCCcccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 427 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 427 (1086)
..|.+||...+.... +..|...+.+.+|||||+.||..+. +..|++||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888876544322 5568889999999999999998864 468999999987642
Q ss_pred ceEeccccccEeEEEecCCCCcEEEEEEeCCCc--EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC-
Q 001396 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 503 (1086)
Q Consensus 428 ~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg- 503 (1086)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+ +||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 24456677889999999995 3455665655 77789887765 4565566666667774 56777776663 33
Q ss_pred -eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 504 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 504 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
.|.+||+..+...... .....+....|+|||+.|+..... .+...|.+||+.++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEEee-cCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 5778887765544332 234456678899999999987643 2356799999866543 33322 2 2466788999
Q ss_pred CCCEEEEEECC------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 583 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 583 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||+.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875542 3578888876554 3443221 245667765
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.3e-12 Score=127.91 Aligned_cols=259 Identities=12% Similarity=0.112 Sum_probs=160.9
Q ss_pred cceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 729 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
..|++++|-|.+..-++.+..+-|.+|..+..... . ..++ ..+..+.... ...+| ..|+.+.+.+||
T Consensus 141 rnvtclawRPlsaselavgCr~gIciW~~s~tln~-----~--r~~~---~~s~~~~qvl--~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-----N--RNIR---MMSTHHLQVL--QDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred cceeEEEeccCCcceeeeeecceeEEEEcCccccc-----c--cccc---cccccchhhe--eCCCC-ceeeEEEEcCCC
Confidence 45778888887766777777777888876543210 0 0000 0111111121 22234 789999999999
Q ss_pred CEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEE
Q 001396 809 AYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 886 (1086)
Q Consensus 809 ~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l 886 (1086)
..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..++-|+..++|+...........--.+.|...
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta 286 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA 286 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence 9999998 57899999999888766655667899999999 89999999999999999654332222222344589999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcee----------eeeee------eccCCCccCCCCceEEEEecCCCEEEEEeC
Q 001396 887 VFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 887 ~~spdg~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
+|+|+|++|..+... .=++|.+.-.... ....+ ....+.....+...+++|.|.|.+||+...
T Consensus 287 cWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 999999987655432 2345554321110 00111 111111111257899999999999999533
Q ss_pred C---------eEEEEEcCCccceeccccCC--ccCEEEEEEeC---CCCEEEEEECCCcEEEEEcC
Q 001396 951 T---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 951 ~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
+ .|.+||....-.+.-...+- ......++|+| +|.+|..+=.-|.+.-|++.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 35667765433322211111 22345667776 56666666666777666654
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=8.7e-13 Score=149.04 Aligned_cols=233 Identities=14% Similarity=0.101 Sum_probs=153.4
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEe--ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
.+......+.+..+.+.+...+|||||+.++.+.. .+..|.+||+.+|+.... ....+
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~~ 243 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFPR 243 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCCC
Confidence 33334444556667778999999999997444432 235799999988865431 12223
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CC--cEEEEe
Q 001396 392 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK--TIKVWD 465 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~--~i~iwd 465 (1086)
.+..++|||||+.|+.. +.+| .|++||+.+++..+ +..+...+....|+|||+ .|+..+. ++ .|.++|
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEE
Confidence 34568999999999876 3344 59999998876432 344455678999999999 4554443 34 455557
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+.+++. ..+..+.......+| ++||++|+..+.+ ..|.+||+.++....... ........|+|||+.|+..+
T Consensus 318 ~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 318 INGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD--TFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC--CCCCCCceECCCCCEEEEEE
Confidence 776654 344434444555666 4577788776543 358889988776543322 12334678999999999888
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
.++. ...++++++. |...+.+.++. +.+...+|+|
T Consensus 393 ~~~~-~~~l~~~~~~-G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGM-GSVLNLVSTD-GRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred cCCC-ceEEEEEECC-CCCeEECccCC---CCcCCcccCC
Confidence 6433 5568888884 55556666655 6777888887
No 233
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.54 E-value=8.5e-10 Score=113.68 Aligned_cols=534 Identities=13% Similarity=0.114 Sum_probs=280.5
Q ss_pred CCccCCCccceeeeeccCCCCceEeeecCCCceEEEE----Ee--ccCcEEEEecCCCceeeeeeeeeeeccccceeeee
Q 001396 310 ETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 383 (1086)
Q Consensus 310 ~~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~----gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1086)
..|...+..-..+.+..|-+-|+.-.|+|||+.++.+ |+ .-+.+.+.+.+.|+..+. +
T Consensus 60 dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-T--------------- 123 (668)
T COG4946 60 DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-T--------------- 123 (668)
T ss_pred HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-E---------------
Confidence 3344444444456667777889999999999974442 22 235688888888887653 1
Q ss_pred eeecCCCccEEE-EEECCCCCEEEEEeCCC----EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC
Q 001396 384 ALVRDPGVSVNR-VVWSPDGSLLGVAYSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 458 (1086)
Q Consensus 384 ~~~~~h~~~V~~-l~~spdg~~las~~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d 458 (1086)
.+ | ..-+. .-|+|||+.|++...-. --.+|.+.....-. -.-.-++.+.+.+- ||. ++.|-.-
T Consensus 124 -yf-G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~----e~LnlGpathiv~~-dg~---ivigRnt 191 (668)
T COG4946 124 -YF-G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT----EPLNLGPATHIVIK-DGI---IVIGRNT 191 (668)
T ss_pred -Ee-c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee----eeccCCceeeEEEe-CCE---EEEccCc
Confidence 12 2 23333 45999999998874322 12344443321100 01123445555553 342 3333111
Q ss_pred C------------cEEEEeCCC-CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc
Q 001396 459 K------------TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG 525 (1086)
Q Consensus 459 ~------------~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 525 (1086)
- .=++|--.. |+.-..+-.-.+.|++-.+. .++..+....+|.=.+|..+-...-..-...-..
T Consensus 192 ydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd 268 (668)
T COG4946 192 YDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD 268 (668)
T ss_pred ccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchhhhcCCchh
Confidence 0 123453222 22222222222222221111 1122333344444444433322111111111112
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc---C-----CceEEEE-Eec-CCCEEEEEECCCc
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---H-----NSVSVVH-FDT-AKDQILAAGDDHV 595 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~-----~~v~~~~-~~~-~~~~l~~~s~dg~ 595 (1086)
..+-..+.||+.++... .+.|+++|..+......--+.... . .+..-+. |++ +|.+++..|. |.
T Consensus 269 YY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gk 342 (668)
T COG4946 269 YYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GK 342 (668)
T ss_pred ccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-Cc
Confidence 33334567999988754 345999998876543322221100 0 0111111 222 4667766664 66
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC-cEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 596 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
..|.+.-.+-.++.-. ...|.-..+..+++-++.|..|| .+.|++..+++.-....
T Consensus 343 aFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------------------- 399 (668)
T COG4946 343 AFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------------------- 399 (668)
T ss_pred EEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-------------------
Confidence 6676665555444321 22366667777777888999988 88899888663221111
Q ss_pred ccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEE
Q 001396 675 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 754 (1086)
Q Consensus 675 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 754 (1086)
.-+.|.++..+++|+.++++.....+.+
T Consensus 400 ----------------------------------------------------~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 400 ----------------------------------------------------DLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred ----------------------------------------------------CccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 3356888999999998888888877777
Q ss_pred eeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-C----CeEEEEEccCceE
Q 001396 755 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKT 829 (1086)
Q Consensus 755 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-d----g~i~iwd~~~~~~ 829 (1086)
.|++.+ ...+.- .....-|+.++++|+++++|.+- + ..|+++|+.+++.
T Consensus 428 ididng----------------------nv~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 428 IDIDNG----------------------NVRLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEecCC----------------------CeeEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 766543 211111 12567799999999999999986 3 3599999998887
Q ss_pred EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--eccccCCeEEE----EEeCCCCEEEE-EeCCC
Q 001396 830 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGL----VFSDALNILVS-SGGDA 902 (1086)
Q Consensus 830 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~v~~l----~~spdg~~l~s-~s~dg 902 (1086)
...-. ....=.+-+|.| |+++|.--+.- -.|..+...+.. +..|..+-..+ ..||-.+..-. -+.+|
T Consensus 482 y~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~ 555 (668)
T COG4946 482 YDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAG 555 (668)
T ss_pred EEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCcccc
Confidence 65543 444446778999 88888765421 112222221111 11222221111 01222222111 12333
Q ss_pred cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-------------E--eCCeEEEEEcCCccceecc
Q 001396 903 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQW 967 (1086)
Q Consensus 903 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-------------~--~d~~i~vwd~~~~~~~~~~ 967 (1086)
.+-+=++... ...+..-.+ .-.+++=-.+|+.+.- + .-|.+.+||+++...-..
T Consensus 556 e~dle~ie~r----~eP~pVee~------dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~- 624 (668)
T COG4946 556 EVDLEGIEDR----VEPFPVEEG------DYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY- 624 (668)
T ss_pred ceehhhhccc----ccccccCcc------ceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-
Confidence 3332222210 011111111 1222222333332221 1 246789999987654321
Q ss_pred ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 968 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 968 ~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
...++++..|+||+.++. =.||.+++++++.
T Consensus 625 ----k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 625 ----KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred ----hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 457899999999999988 6899999999986
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.1e-14 Score=145.55 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=199.1
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceec
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 698 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 698 (1086)
-+.+.++.+|++|+.|+..|.+..+|..++.....+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------------------------------------------ 169 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------------------------------------------ 169 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------------------------------------------
Confidence 47789999999999999999999999998765544331
Q ss_pred cccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceec
Q 001396 699 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 778 (1086)
Q Consensus 699 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 778 (1086)
...|..+.|-.+.+ +++......+.|||-.
T Consensus 170 -----------------------------~Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~-------------------- 199 (545)
T KOG1272|consen 170 -----------------------------METVRDVTFLHNEQ-FFAVAQKKYVYVYDNN-------------------- 199 (545)
T ss_pred -----------------------------hhhhhhhhhhcchH-HHHhhhhceEEEecCC--------------------
Confidence 12334444444444 3344444566666522
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe
Q 001396 779 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 857 (1086)
Q Consensus 779 ~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 857 (1086)
|.++.... ....|..+.|-|..-+|+++++ |.+.--|+.+|+.+..+....+.+..++-+| -+..+-+|.
T Consensus 200 ---GtElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 200 ---GTELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred ---CcEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcC
Confidence 22222211 4567888999999989998885 8999999999999999999999999999999 777999999
Q ss_pred CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEE
Q 001396 858 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 937 (1086)
Q Consensus 858 ~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 937 (1086)
..|+|.+|...+.+++..+-.|.++|.+|++.++|+|+||+|.|..++|||+..-.... ....+ .+...++
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~--t~~tp-------~~a~~ls 341 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH--TYRTP-------HPASNLS 341 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc--eeecC-------CCccccc
Confidence 99999999999999999999999999999999999999999999999999999844211 11111 1466788
Q ss_pred EecCCCEEEEEeCCeEEEEEc-CCcc-ceeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 938 FHKDQTRFLLVHETHLAIYEA-EELT-CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 938 ~s~dg~~l~~~~d~~i~vwd~-~~~~-~~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
||..|. ||++....+.+|.= -.+. +....+..| .+.|..+.|.|-...|-.|-.-|.-.
T Consensus 342 ~Sqkgl-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 342 LSQKGL-LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred cccccc-eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 887765 56666678999953 2222 223333345 66999999999777676665555433
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.8e-12 Score=147.36 Aligned_cols=238 Identities=15% Similarity=0.107 Sum_probs=157.9
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCcccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 427 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~ 427 (1086)
..|.+||...+.... +..+...+.+.+|||||+.||.++.+ ..|++||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468899986543322 44577789999999999999988643 479999998876432
Q ss_pred ceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCe
Q 001396 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK 504 (1086)
Q Consensus 428 ~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~ 504 (1086)
+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ +||+.|+..+. +|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 3344455668899999996 334555555 599999988875 4455555555667774 57777776654 454
Q ss_pred --EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 505 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|.++++.+++.... ..........+|+|||+.++..... ++...|.+||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 66666665544332 2233344578999999999887642 33557999999888755 3322 1 2334568999
Q ss_pred CCCEEEEEECC---CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 583 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 583 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||++++..+.+ +.|+++++.. .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 99998876643 4588888854 3444444322 2356667765
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.2e-12 Score=148.92 Aligned_cols=232 Identities=15% Similarity=0.134 Sum_probs=153.5
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEec---cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.+......+.+..|...+...+|||||++ |+..+. ...|.+||+.+|+... +..+.
T Consensus 189 ~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~ 247 (433)
T PRK04922 189 ADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFR 247 (433)
T ss_pred ECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCC
Confidence 33344455667777778999999999996 555543 2469999998887543 22233
Q ss_pred ccEEEEEECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CCCc--EEEE
Q 001396 391 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVW 464 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d~~--i~iw 464 (1086)
+...+++|||||+.|+.. +.+| .|++||+.+++.. .+..+.......+|+|||+. ++..+ .++. |.++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRV 321 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEE
Confidence 445678999999988754 4444 6999999987643 24455555678999999994 54444 3444 7777
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
|+.+++.. .+..+.......+|+ +||+.|+..+.++ .|.+||+.++.... +. +........|+|||+.++..
T Consensus 322 dl~~g~~~-~lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 322 AASGGSAE-RLTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred ECCCCCeE-EeecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEE
Confidence 87777643 332233334456774 5777887765443 69999998776553 22 22234567999999999887
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
+.. .+...|++++...+ ..+.+..+. +.+...+|+|
T Consensus 397 s~~-~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 397 TRE-GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred Eec-CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 754 34678999998544 444444333 4566667765
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=8.9e-13 Score=137.53 Aligned_cols=278 Identities=10% Similarity=0.137 Sum_probs=186.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE-----CCCCCE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 404 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spdg~~ 404 (1086)
.+....++-.|++|..--+ ..+.+|+...+..+.. ++.+..+.+ ....|-+| .|+|--
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence 4556666677777544332 5688898876544431 111112222 23334444 356778
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEec--cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
|..|-.-|.|++.|....+..+ +.... -.+..|+|+.|-|.++. .++.+-.+|.++++|.+ +....
T Consensus 188 llIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8889888999999877633222 11111 23468999999998887 45566779999999862 11112
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
+.-++..-+++..+.....-+. .+..++..+....+.|...+|+|||++||+.+. |+.++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 2222222233333333211110 111334444445558899999999999999987 889999999999888
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec----------------
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---------------- 626 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---------------- 626 (1086)
..++..- +...|++|+|||++|++|++|.-|.||.+..++.+..-.+| ...|..|+|.|
T Consensus 326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeecccccccccccccccccc
Confidence 8777766 78999999999999999999999999999999888776544 56788898883
Q ss_pred -------------------CC-------------CEEEEEECCCcEEEEECCCCCee
Q 001396 627 -------------------NG-------------TLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 627 -------------------~~-------------~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
++ -++.+.+.|..+.+||+......
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 01 24667788999999999876443
No 238
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=1.1e-11 Score=129.11 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=192.7
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.-++..++|||.|++ |++... ..|.+|+-..+..+..+ ....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~~-l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGTY-LFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcchh-eehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 348899999999985 666544 66999998877655331 2257999999999999998
Q ss_pred EeCCC---------------EEEEEEecCCCccccceEecccccc--Ee-EEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 408 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 408 ~~~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+ +++-- ....++|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 65433 49999999997665 44444444 45 688999988 44333 2446999997 44
Q ss_pred cee-EEeecC-CcceEEEeecccCCccEEEE-----EEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 470 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 470 ~~~-~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
... ..+..- ...|....++|..++..|+. .+.++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 322 122111 24567777777766666554 46788999999986666555444444445688899999887533
Q ss_pred e-------CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE--ECCCcEEEEEcCCCeeEEEEcCC
Q 001396 543 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 543 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
. +.-|+..++++++....+ ....... ++|...+|.|.++.+++. -.+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 2 112346788998874433 2222334 899999999999887664 47888999999876 44333322
Q ss_pred CCCCCCceEEEecCCCEEEEEECC---CcEEEEECCCC
Q 001396 614 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPES 648 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~ 648 (1086)
.-+.+.|+|.++++++++-| |.+.+|+....
T Consensus 317 ----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 317 ----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ----ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 13678999999999997765 66788876643
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=2.3e-10 Score=125.73 Aligned_cols=210 Identities=13% Similarity=0.182 Sum_probs=137.1
Q ss_pred CeeEEEeecCCCEEEEEe--CCeEEEEEccC-ceEEEE---E----------cCCCCCeEEEEEcCCCCCEEEEEeC-CC
Q 001396 798 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS 860 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg 860 (1086)
....++++|++++|+++. +|.+.++++.. +..... + +.......++.|+| +++++++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345688888998888886 68899998876 433222 2 12335678999999 8887776543 35
Q ss_pred eEEEEEcCCce--eE--EEec-cccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECC--CCceeeeeeeeccCCCccCCCC
Q 001396 861 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 861 ~v~iwd~~~~~--~~--~~l~-~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 932 (1086)
.|.+|++.... +. ..+. ........++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 32 2222 2344578899999999886655 57789999998 5544443444433221111125
Q ss_pred ceEEEEecCCCEEEEE--eCCeEEEEEcC--Cccc--eeccccCCccCEEEEEEeCCCCEEEEEEC-CCcEEEEEc--CC
Q 001396 933 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEA--SN 1003 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~~~-Dg~v~vWd~--~~ 1003 (1086)
...++++|||++|.++ ..+.|.+|++. +|.. +..+. ........+.|+|||++|+++.. ++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7889999999999986 45689999993 3332 22211 12445889999999999998874 568999977 46
Q ss_pred Cceeee
Q 001396 1004 LEVQCR 1009 (1086)
Q Consensus 1004 ~~~~~~ 1009 (1086)
|.+...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 666533
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.5e-10 Score=124.79 Aligned_cols=541 Identities=10% Similarity=0.098 Sum_probs=322.2
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
...|++|.....| +|+|+.||.++|-.+.+...-.... -+.+.+...-...+.||.+.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 6789999998885 9999999999999887643321100 0111122222234899999999999999999999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcceEEEeec
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~ 488 (1086)
.+|.|.||-+-.|.-..... -......|.+++|..||. .+.....||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 99999999998886554331 234566799999999999 6777778888877664432211 122221 1224455
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCc-------eeE----EecCCCCceEEEEEe--------cCCCEEEEEeeCCCCce
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~d~~~l~~~~~~~~~~~ 549 (1086)
++|.+.++.+-.+|.+.++|.+..= +.. .+...+..+..+.|. ||...++.+.. +|
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4566777888888999999865321 101 112222234445542 47778888876 44
Q ss_pred eEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECC---------CcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 550 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 550 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
.+.+..-.+ .+++..-.+ -.+....|+++|..++.++.+ +.|.++. .-|+.+.++...+. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 555543332 223222222 457888999999999987743 2455554 35677777776644 58
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
++++|-..|-.++.+- |+.|.+=+++..-....+.. .+.+... .++ .
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~------------------------TvVy~y~-~~e-------~ 358 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEE------------------------TVVYVYQ-KEE-------L 358 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeee------------------------EEEEEEc-cCC-------C
Confidence 8999988887777654 57777766654322211110 0000000 000 0
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
....|.+||....+.... .-....+++++.+.-.++.-..+|.+.-++.-. ... ++|-.
T Consensus 359 p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le----------~~~--~~~~l 417 (1189)
T KOG2041|consen 359 PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLE----------NRS--RVYFL 417 (1189)
T ss_pred cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhh----------ccc--ceEEE
Confidence 113456677553322111 112334556665555455555555544321000 000 00000
Q ss_pred CCCCceeeecCCC--CCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE----------------------------
Q 001396 780 RHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------------- 829 (1086)
Q Consensus 780 ~~g~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---------------------------- 829 (1086)
..-..+.. ...-..|.-.-+.-++.+++.++...+.+|.....+.
T Consensus 418 -----~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~ 492 (1189)
T KOG2041|consen 418 -----QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRT 492 (1189)
T ss_pred -----eeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhce
Confidence 00000000 0011223333344477788888877888887532110
Q ss_pred ----EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 001396 830 ----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 905 (1086)
Q Consensus 830 ----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 905 (1086)
..++.+..++|.+++.+ .+++.++-..|.|.-|.+.+..+..... -+..|.+++..-+...+|...--|.+-
T Consensus 493 l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~t 568 (1189)
T KOG2041|consen 493 LEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVT 568 (1189)
T ss_pred eeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceee
Confidence 12344556778888886 4688899999999999999877766654 455689999988888999888889898
Q ss_pred EEECCCC-ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCcc
Q 001396 906 VWDVDGW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 962 (1086)
Q Consensus 906 iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~ 962 (1086)
+.|+.-. .......+-..+. ..|..+.|..|+..|++ -....++|++-.+.+
T Consensus 569 f~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 569 FQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred eeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 8888721 1111111211111 25888999999887777 455668888765443
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.3e-12 Score=145.92 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=150.7
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEec-c--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-V--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
+......+.+..+.+.+.+.+|||||+. |+..+. + ..|.+||+.+|+... +....+
T Consensus 182 D~dG~~~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g 240 (427)
T PRK02889 182 DADGQNAQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG 240 (427)
T ss_pred CCCCCCceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence 3334445556677789999999999996 555443 2 359999999887543 222334
Q ss_pred cEEEEEECCCCCEEEE-EeCCCEEEEEEe--cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe--C
Q 001396 392 SVNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--A 466 (1086)
Q Consensus 392 ~V~~l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd--~ 466 (1086)
.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+...+....|+|||+.+ +++...++...||. +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEEC
Confidence 5678999999999875 566776666654 4443 22 344555666788999999952 23333445556664 4
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.+++. ..+..+.......+| ++||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..+.
T Consensus 316 ~~g~~-~~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAA-QRVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCce-EEEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence 45543 222222233334566 55778888776554 69999998876554332 223467899999999998876
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 583 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 583 (1086)
.+ +...+++.+. ++...+.+..+. +.+...+|+|-
T Consensus 391 ~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 391 QG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred cC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 43 3567888887 455555555444 56677777763
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.3e-12 Score=129.69 Aligned_cols=272 Identities=14% Similarity=0.132 Sum_probs=195.6
Q ss_pred CCCceEeeecCCCceEEEEEe-ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
...|..++|--|++.=+..+. .|..+............. .|++. .......+|..++.. || .|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EEE
Confidence 447888888877754344444 566666666666554432 12221 133345667666664 33 677
Q ss_pred EEeCCCEEEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCC--CcEEEEeCCCCceeEEeecC-----
Q 001396 407 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 478 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d--~~i~iwd~~~~~~~~~~~~h----- 478 (1086)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||.. ..++|||++..+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 77889999999998543111 11123223 45777777777775 67779988 88999999988665543321
Q ss_pred ----CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 479 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 479 ----~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.-+++++.|.+..+...|++++.-+.+|+||.+.++. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1234566676554478999999999999999987654 5577888889999999999999999876 667999
Q ss_pred EeCCCCeeeeE-EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 554 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 554 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
+|+++++.... +.+.. +.|+++..+|..+++++++-|..+||+|+++.+++........ .+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 99999998877 77777 8999999999999999999999999999999887766654433 45555544
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3e-11 Score=127.56 Aligned_cols=288 Identities=12% Similarity=0.123 Sum_probs=188.3
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.......++|++|+ ++|.+. +..|.|++..++..+.+. ....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccc
Confidence 33578889999998 566654 588999999988644321 1137889999999999976
Q ss_pred E-----eCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 408 A-----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 408 ~-----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
= ..+ ..+.+|+++++.... . +..-...-++..|+.|.. ++.--..+.+.+|++..-+.+. -+-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s-~--~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS-Q--IQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh-h--eehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 3 122 347899999953322 1 222112226899999986 3333345679999987643332 223
Q ss_pred CCcceEEEeecccCCccEEEE-----EEcCCeEEEEEcCCCceeEEec---CCCCceEEEEEecCCCEEEEEe-e--CC-
Q 001396 478 HGAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCG-T--SK- 545 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~-~--~~- 545 (1086)
|...|+.+.+++.+....+++ .+.-+.|++|............ .....-..+.|++-|.-|+... . ++
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 677888888888766556665 3566789999776322211110 0111234567777776544322 1 11
Q ss_pred ----CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 546 ----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 546 ----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
-|+..+++.+++.......+.. .++|+++.|+|+++.+++ |-.-..+.|+|++ +.++..+.. .+-
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpR 314 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPR 314 (566)
T ss_pred CccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCc
Confidence 2456788888874443333332 489999999999987766 5577889999985 455555432 234
Q ss_pred ceEEEecCCCEEEEEECC---CcEEEEECCCCCeeeec
Q 001396 620 PRICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 654 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~ 654 (1086)
+++-|+|.|++++.++-+ |.|.+||+.+.+.+..+
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 789999999999988764 88999999876555443
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.1e-12 Score=144.87 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=146.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
+..+...+.+.+|||||+.||..+.+ ..|++||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999988643 469999999886432 3334455678999999995 344667777766
Q ss_pred EEe--CCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcC--CCceeEEecCCCCceEEEEEecCCCE
Q 001396 463 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 463 iwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
||. +.++. ...+..+.+......| ++||+.|+..+. +|...+|.++ .+..... ..........+|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCE
Confidence 664 44444 5566556655666777 457777776554 4666777654 3332222 222333446789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC---cEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++..+..+ +...|++||+.+++....... .......|+||++.|+.++.++ .+++.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99776432 345799999988875433222 2335678999999998876544 3555566 455555554332
Q ss_pred CCCCCceEEEec
Q 001396 615 GLPENPRICFNK 626 (1086)
Q Consensus 615 ~~~~v~~v~~s~ 626 (1086)
+ .+...+|+|
T Consensus 415 g--~~~~p~wsp 424 (427)
T PRK02889 415 G--DVREPSWGP 424 (427)
T ss_pred C--CCCCCccCC
Confidence 2 356677776
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.2e-11 Score=125.86 Aligned_cols=333 Identities=14% Similarity=0.159 Sum_probs=210.3
Q ss_pred CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-----EC-----
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 592 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~----- 592 (1086)
..++...+++++|++++.+. +..+.|++..++..+.+... ..+..+.|+|.+.++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34577889999999999886 45689999888764433332 368899999999988762 12
Q ss_pred CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 593 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 593 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
.-.+.+|++.++.....+...... -++..|++|..+.+- -..+.+.+|+..+-+.. ...-|...+..+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence 234779999996665555443322 257889988764433 23468999998873222 22345667777777764221
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcc---ccccccCCcccccceEEEEEecCCceEEEeecc
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN 749 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 749 (1086)
- .+++ ...-..+.-..+++|......... +..+ -...=..+.|++-|..|++....
T Consensus 180 ~-------~vAv--------yvPe~kGaPa~vri~~~~~~~~~~~~a~ksF------Fkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 180 P-------FVAV--------YVPEKKGAPASVRIYKYPEEGQHQPVANKSF------FKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred c-------eEEE--------EccCCCCCCcEEEEeccccccccchhhhccc------cccceeEEEeccCCceEEEEEEE
Confidence 1 1111 001123445667888754211111 1111 11112345677666655443221
Q ss_pred ceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC---CeEEEEEccC
Q 001396 750 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMT 826 (1086)
Q Consensus 750 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d---g~i~iwd~~~ 826 (1086)
+++......-|+ .++.+.++....+. ..+. ..++|.++.|+|+++-+++..+ .++.|||+.
T Consensus 239 ------dVDktn~SYYGE----q~Lyll~t~g~s~~--V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr- 302 (566)
T KOG2315|consen 239 ------DVDKTNASYYGE----QTLYLLATQGESVS--VPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR- 302 (566)
T ss_pred ------eecCCCcccccc----ceEEEEEecCceEE--EecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-
Confidence 011100001111 12334444422222 2232 5789999999999998888763 789999986
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeC---
Q 001396 827 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG--- 900 (1086)
Q Consensus 827 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~--- 900 (1086)
+..+..+ ..++=+++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||++++|+..
T Consensus 303 ~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 303 GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEecccc
Confidence 5555555 456678999999 88888887755 7999999999999988875443 45799999999999865
Q ss_pred ---CCcEEEEECCC
Q 001396 901 ---DAQIFVWDVDG 911 (1086)
Q Consensus 901 ---dg~i~iwd~~~ 911 (1086)
|..++||++.+
T Consensus 378 lrvdNg~KiwhytG 391 (566)
T KOG2315|consen 378 LRVDNGIKIWHYTG 391 (566)
T ss_pred EEecCCeEEEEecC
Confidence 67799999986
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.1e-12 Score=143.37 Aligned_cols=232 Identities=15% Similarity=0.103 Sum_probs=154.3
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEec---cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.+......+.+..|...+.+.+|||||++ |+..+. +..|.+||+.+|+... +..+.
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~ 245 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQREL--------------------VGNFP 245 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEE--------------------eecCC
Confidence 33344555667788889999999999997 554443 4679999999887542 33455
Q ss_pred ccEEEEEECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CC--CcEEEE
Q 001396 391 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVW 464 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d--~~i~iw 464 (1086)
+.+.+.+|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||+. ++..+ .+ ..|++|
T Consensus 246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVM 319 (435)
T ss_pred CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEE
Confidence 677889999999988754 4444 4888898887543 35556666778999999995 44443 33 368888
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
|+.+++. +.+..+...+....|+ +||+.|+..+.+ ..|.+||+....... +. ....+..+.|+|||+.|+..
T Consensus 320 d~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt-~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 320 NADGSNP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LT-SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred ECCCCCe-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceEe-cc-CCCCCCCCeECCCCCEEEEE
Confidence 9776654 4444344556666674 577788776543 357888876544332 22 22356788999999999876
Q ss_pred eeCCCCc--eeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 542 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 542 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
+...... ..++++|+..+.. +.+.. . ..+...+|+|
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred EccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 6533221 4788999876654 33332 2 3455666765
No 247
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.46 E-value=8.4e-08 Score=116.62 Aligned_cols=519 Identities=12% Similarity=0.161 Sum_probs=290.9
Q ss_pred ccEEEEEECCCCCEEEEEeC--CC--EEEEEEecCCCccccceEec-----cccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 391 VSVNRVVWSPDGSLLGVAYS--KH--IVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~--d~--~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
..+...+|.++...+.++.. .. .|.+-....+........+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 46777777776555444332 22 34444433332222222332 2346899999999998 56667778888
Q ss_pred EEE----eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC------------C-Cc--ee------
Q 001396 462 KVW----DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------S-LG--AR------ 516 (1086)
Q Consensus 462 ~iw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------~-~~--~~------ 516 (1086)
.+. |..+.. +.....-...|.+++|+| |++.|+..+.++++.+..-+ . +. .+
T Consensus 100 ~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDE-IEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCce-eEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 888 543332 223334567899999955 66799999999988775321 0 00 00
Q ss_pred --EEecC------------------------CCCceEEEEEecCCCEEEEEeeCCC-C-ceeEEEEeCCCCeeeeEEecc
Q 001396 517 --VDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 517 --~~~~~------------------------~~~~i~~~~~s~d~~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
..+.+ ....-..++|-.||.++++.+.+.. + .+.+++|+-+ |.+..+...-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 00000 1224467899999999998876333 2 5899999965 6655444432
Q ss_pred cccCCceEEEEEecCCCEEEEEEC---CCcEEEEEcCCCeeEEEEcCC--CCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 569 QLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
. +--.+++|-|.|++|++... ...|.+|.. +|-.-..+... .....|..+.|++|+..||+...|. |.+|
T Consensus 256 ~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW 330 (928)
T PF04762_consen 256 D---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW 330 (928)
T ss_pred C---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence 3 44567899999999988653 455777764 44433334332 2334689999999999999988665 9999
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
...+-.......- .+.
T Consensus 331 t~~NYHWYLKqei--------~~~-------------------------------------------------------- 346 (928)
T PF04762_consen 331 TRSNYHWYLKQEI--------RFS-------------------------------------------------------- 346 (928)
T ss_pred EeeCCEEEEEEEE--------Ecc--------------------------------------------------------
Confidence 8876533222110 000
Q ss_pred CcccccceEEEEEecCC-ceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 724 SKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
....+..+.|+|.. ..+...+.+|.+..+++. |++..+.
T Consensus 347 ---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~------------------- 386 (928)
T PF04762_consen 347 ---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSP------------------- 386 (928)
T ss_pred ---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEecC-------------------
Confidence 01112224555532 234555555666555432 1111111
Q ss_pred Eeec-CCCEEEEEeCCeEEEEEccCceE-----EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----
Q 001396 803 ALSK-NDAYLFSASGGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 872 (1086)
Q Consensus 803 ~~s~-dg~~l~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 872 (1086)
..+| |...+++.++.++.+-.+...-. ...+. ....|.+++|++ ++..+|+-..||.|.+|.......
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~ 464 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVK 464 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCccccc
Confidence 0112 22234444445566666543221 12222 347899999999 676788899999999998654321
Q ss_pred ----EEEec----------cccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeeccCCCccCCCCceE
Q 001396 873 ----ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 873 ----~~~l~----------~h~~~v~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
...+. .-...+..++|..+...++....+ ..+.++++...+... .+....... +.+..
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~ 539 (928)
T PF04762_consen 465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLI 539 (928)
T ss_pred CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEE
Confidence 11111 123457888998888777766654 578888885432111 111111111 23445
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC---EEEEEECCCcEEEEEcCCCceeeeec
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~---~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
+...++...++. ..+|.+...+..........++. ......++...+.. .++.-+..|.+++ .+..++.
T Consensus 540 ~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~-- 612 (928)
T PF04762_consen 540 ISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS-- 612 (928)
T ss_pred EeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec--
Confidence 555555553444 78888887666543322211211 22233333333333 3443334444443 3333321
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1012 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.+.+++.+ +.+|+.......+++..+.
T Consensus 613 --------------~~tSF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 613 --------------NCTSFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred --------------CCceEEEE---cCEEEEEecCceEEEEECc
Confidence 12344444 3677777888889999997
No 248
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=2.8e-10 Score=118.79 Aligned_cols=366 Identities=11% Similarity=0.149 Sum_probs=226.4
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
.+|...+......+....-++..+++||.|.+|++... ..|.+|+...+..+..+.. ..|..+.|+|+++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeec-----CCceecccCcccc
Confidence 34555554444455556668889999999999998763 3499999888776666654 5699999999999
Q ss_pred EEEEEECC---------------CcEEEEEcCCCeeEEEEcCCCCCCCCc-eEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 586 QILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 586 ~l~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
+|.+=+.. ..+.+||..+|..+..+.......... -+.|+.+.+++|-. -...+.|+++...-
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCcc
Confidence 99985533 349999999999999887654322233 68899888877655 33578898863221
Q ss_pred eeeeccc-cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccc
Q 001396 650 SVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 728 (1086)
Q Consensus 650 ~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 728 (1086)
....+.. ....+....++|.+.. ..+..|-
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~~t-------------------- 194 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNH-----------------------------DELAYWT-------------------- 194 (561)
T ss_pred ccCchhhccccceeeEEecCCCCC-----------------------------ceEEEEc--------------------
Confidence 1111110 1122333333321100 0011111
Q ss_pred cceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 729 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
|. .....+.+++|.++.++. +.+..+ ....-..+.+.+.|
T Consensus 195 ---------PE-----k~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g 234 (561)
T COG5354 195 ---------PE-----KLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLG 234 (561)
T ss_pred ---------cc-----cCCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCC
Confidence 11 012345556665553321 111111 01111234455555
Q ss_pred CEEEEEe------------CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEEcCCceeEE
Q 001396 809 AYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 809 ~~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd~~~~~~~~ 874 (1086)
.++.+-- ...+.|+++......... ...++|...+|.| .++.+++ |..+-.+-++|++.. +..
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRF 311 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc-eEE
Confidence 5544321 245888888743333332 5678999999999 5554443 357789999999854 444
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE---
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--- 948 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--- 948 (1086)
.+. ...=..+.|||.+++++.++-| |.+.+||..+.- .++..+.+. ..+-+.|||||.++.+.
T Consensus 312 ~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 312 YFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred ecC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCC
Confidence 433 3334568899999999998876 579999988632 233233332 34667899999998772
Q ss_pred ----eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC
Q 001396 949 ----HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 949 ----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg 994 (1086)
.|+.+.|||+...... ..+.+.|-|.|++..+.+.+.
T Consensus 381 ~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 381 EKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred cccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 4678999998754432 456678888898888877765
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=5.9e-10 Score=112.51 Aligned_cols=281 Identities=11% Similarity=0.097 Sum_probs=183.7
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc---ceeEEeeccCCccccCcccccccCCcee
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 777 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~ 777 (1086)
+..|.+|+++.......... .......++-++++|+++.|.++..+ |.+..|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 46788999874332211111 12255678889999999988887654 6666665543
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccC-ceEEEE--EcCCCCC----------eEE
Q 001396 778 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 842 (1086)
Q Consensus 778 ~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 842 (1086)
.+|.-........ ...+-..++++++|++|+++. .|.|.++-++. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333122211111 233347899999999999997 58999999865 433221 1123333 788
Q ss_pred EEEcCCCCCEEEEEeCC-CeEEEEEcCCceeEEEec---cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCC--Ccee
Q 001396 843 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 915 (1086)
Q Consensus 843 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~--~~~~ 915 (1086)
..|.| ++++|++.+-. -.|.+|++..|++...-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 89888876532 379999999876532211 23345788999999999877665 89999999987 4444
Q ss_pred eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeC--CeEEEEEcCC--ccce-eccccCCccCEEEEEEeCCCCEEEEE
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS 990 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~~i~vwd~~~--~~~~-~~~~~~h~~~v~~l~fs~dg~~l~s~ 990 (1086)
....+..+.....-..+...+.+++||++|.++.. +.|.+|.+.. ++.. ......+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44444333333322346788999999999999754 3688887763 3221 11222334557888999999999999
Q ss_pred ECCC-cEEEEEcC--CCcee
Q 001396 991 FVDG-TLSIHEAS--NLEVQ 1007 (1086)
Q Consensus 991 ~~Dg-~v~vWd~~--~~~~~ 1007 (1086)
..|+ .|.+|..+ +|++.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8765 58888765 44443
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.42 E-value=1.7e-09 Score=114.62 Aligned_cols=204 Identities=11% Similarity=0.091 Sum_probs=131.0
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeE-E-
Q 001396 801 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S- 874 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~- 874 (1086)
.++++|||+++.+.. +..|.+.|+.+++.+.++.... ...-...+. +..+ + -+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~-~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-M-HCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE-E-EeecCceEEEEecCCCceEEee
Confidence 578889998888775 5789999999999998887533 222233332 2222 2 23345444433322 2211 1
Q ss_pred --EeccccCCe-EEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc---c-CCCCceEEEEecCCCEEE
Q 001396 875 --KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRFL 946 (1086)
Q Consensus 875 --~l~~h~~~v-~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~s~dg~~l~ 946 (1086)
.+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+......+....... . ..+....++++++|+++.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 111100110 0014566 8888776665 99999998765544433333321110 0 113455699999999988
Q ss_pred EEe---C--------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceeeeec
Q 001396 947 LVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 947 ~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
+.. . +.|.++|..+++.+..+..+ ..+..++||+||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 732 1 57999999999999887664 5889999999999 777665 57889999999999998884
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=4.1e-11 Score=118.58 Aligned_cols=340 Identities=14% Similarity=0.184 Sum_probs=205.2
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
..++.++|+. ..++....-|..+-+++.+.|.+++||--. .++.-..+... ....+.++.+.++...|++|-..|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecc
Confidence 4456677777 788888888888899999999999999544 44443333322 234688999999999999999999
Q ss_pred cEEEEECCCC----CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCC
Q 001396 639 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 714 (1086)
Q Consensus 639 ~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~ 714 (1086)
++.-+.+... ...+....|...+..+-|+ ...+++++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----------------------~~~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----------------------LTHEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----------------------CCceeEEEeccccce-EEE------
Confidence 9998876643 3334444566666555554 222333443333221 111
Q ss_pred ccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCC
Q 001396 715 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 794 (1086)
Q Consensus 715 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 794 (1086)
.+ ..|..+ .+ | .+.
T Consensus 142 --------------------c~-e~~~~l-----g~----Y-----------------------------~~~------- 155 (404)
T KOG1409|consen 142 --------------------CT-ESGNRL-----GG----Y-----------------------------NFE------- 155 (404)
T ss_pred --------------------ee-ccCCcc-----cc----e-----------------------------Eee-------
Confidence 00 000000 00 0 000
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEE--EccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
..-+++.+.-. +...|. .|.|.+- .......+.++.+|.+.+++++|.+ ..++|.+|..|..+.+||+...+
T Consensus 156 --~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 156 --TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred --ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 00000000000 222222 2333333 2334567788999999999999999 89999999999999999998654
Q ss_pred -eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeee-----eccC--------------------C
Q 001396 872 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-----QTPD--------------------G 925 (1086)
Q Consensus 872 -~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~--------------------~ 925 (1086)
....+.+|.+.|..+...+--+.|++++.||.|.+|+++........-+ +... .
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 3467889999999999988889999999999999999886432221100 0000 0
Q ss_pred CccCC-CCceEEEEecCCCEEEEEeCCeEEEEEcCCccc----eeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEE
Q 001396 926 VMTLA-PSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 926 ~~~~~-~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~v 998 (1086)
|...- ..+...+-|....+...+.+-.+++.|.--... ...+...| ...|+.+.+-.+-.+|+|+|.|+.|+|
T Consensus 311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKI 390 (404)
T ss_pred hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEE
Confidence 00000 011111122222222224444455554321110 01112234 568999999988899999999999999
Q ss_pred EEcCC
Q 001396 999 HEASN 1003 (1086)
Q Consensus 999 Wd~~~ 1003 (1086)
||+.+
T Consensus 391 wd~~~ 395 (404)
T KOG1409|consen 391 WDVRS 395 (404)
T ss_pred Eechh
Confidence 99875
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=5.9e-10 Score=118.16 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=171.2
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC----------CCEEEEEEec
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 420 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~ 420 (1086)
++|.+.|..+++.+..... |.... .+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8899999999888765221 21111 24 9999999988755 6789999999
Q ss_pred CCCccccceEecc-c---cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE
Q 001396 421 GGSDARQQLEIDA-H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 496 (1086)
Q Consensus 421 ~~~~~~~~~~~~~-h---~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 496 (1086)
+.+.+..+..-.. + ......++++|||+.+++.--+.+..|-+.|+.+++.+.++....... -.. ..+. ..
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~---t~e~-~~ 160 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFP---TAND-TF 160 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEE---ecCC-cc
Confidence 9887664321000 1 123347899999995333333458999999999999998886432111 111 1111 12
Q ss_pred EEEEcCCeEEEEEcCCCceeE-----EecCCCCce-EEEEEec-CCCEEEEEeeCCCCceeEEEEeCCCC-----eeeeE
Q 001396 497 FSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKRT 564 (1086)
Q Consensus 497 ~s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~~ 564 (1086)
..-+.||......++...... .+.....++ ..-.|++ +|+++.... ++.|++.|+... .....
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence 233455555444333322211 111100000 0014456 888887765 467999995432 22322
Q ss_pred Eecc----cccCCceEEEEEecCCCEEEEEE----------CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC-
Q 001396 565 YQGL----QLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT- 629 (1086)
Q Consensus 565 ~~~~----~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~- 629 (1086)
+... ........-+++++++++++... ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence 2211 11123444599999999998843 22579999999999999987643 478999999999
Q ss_pred EEEEEE-CCCcEEEEECCCCCeeeec
Q 001396 630 LLAVIA-NENRIKILETPESNSVDAA 654 (1086)
Q Consensus 630 ~l~~~~-~dg~i~iw~~~~~~~~~~~ 654 (1086)
+|++.. .++.|.++|..+++.+..+
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777766 5788999999999888776
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=5.9e-11 Score=125.09 Aligned_cols=283 Identities=16% Similarity=0.169 Sum_probs=189.5
Q ss_pred cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC--cceEEEeecccCCccEEEEEEcCCeEEEEEc
Q 001396 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLY 510 (1086)
Q Consensus 433 ~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~ 510 (1086)
+|...-+.|..+|||++ ++++|...-.|++||+..-... |..|. ..|.-..+ +.|-..++.-..|.+|.+-..
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL--sDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL--SDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe--ccchhhheEeecCceeeehhh
Confidence 46667788999999997 7888988999999998765543 32332 22332222 223334555556666654321
Q ss_pred CCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE
Q 001396 511 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 590 (1086)
Q Consensus 511 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 590 (1086)
- ........ ......++++.-.--|++++. ...|+-+++..|+.+..+.... +.++++..++....|++|
T Consensus 124 ~--G~hy~~RI-P~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 124 Y--GRHYRTRI-PKFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACG 193 (703)
T ss_pred c--Ceeeeeec-CcCCccccccCCCccEEEeec----CcceEEEEcccccccccccccc---ccceeeeecCccceEEec
Confidence 1 11111111 112234555443333333333 2249999999999999998876 899999999999999999
Q ss_pred ECCCcEEEEEcCCCeeEEEEcCCC---------CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec-cccccc
Q 001396 591 GDDHVIKIWDMNKVQLLTTIDAGG---------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDN 660 (1086)
Q Consensus 591 s~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~ 660 (1086)
+.+|.|..||.++......+.... ..+.|+++.|+.+|-.+++|+.+|.+.|||+...+++..- .+..-+
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 999999999999887776664332 2345899999999999999999999999999988766443 233445
Q ss_pred eeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCC
Q 001396 661 LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG 740 (1086)
Q Consensus 661 v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 740 (1086)
|..+.|.+. .++..+++ .....+++||-..+++..... ....+..+++-|++
T Consensus 274 i~~l~~~~~--------------------~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~s 325 (703)
T KOG2321|consen 274 IKKLDWQDT--------------------DQQNKVVS-MDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGS 325 (703)
T ss_pred eeeeccccc--------------------CCCceEEe-cchHHhhhcccccCCceeecc-------ccCCcCceeeecCC
Confidence 665666431 11233333 344789999987665543221 34558889999999
Q ss_pred ceEEEeeccceeEEeecc
Q 001396 741 QAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 741 ~~l~~~~~dg~i~vw~~~ 758 (1086)
-.++++-.++.+..|=++
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 988888888766655443
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.5e-10 Score=128.38 Aligned_cols=228 Identities=13% Similarity=0.098 Sum_probs=141.9
Q ss_pred ecCCCccEEEEEECCCCCEEE---EEeCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC---
Q 001396 386 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--- 457 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~--- 457 (1086)
+......+..-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|||||+++ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 334556677889999998633 33333 368888998876432 33344455678999999953 333322
Q ss_pred -CCcEEEEeCCCC---ceeEEeecCCcceEEEeecccCCccEEEEEE-cCCeEEEEEc--CC-CceeEEecCCCCceEEE
Q 001396 458 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 458 -d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~--~~-~~~~~~~~~~~~~i~~~ 529 (1086)
|-.+.+|++.++ +......++.+.....+| ++||+.|+..+ .+|...+|.+ .. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 333455777653 333333222233455667 55777777655 4676556644 32 22233344444566788
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC---CCcEEEEEcCCCee
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL 606 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~ 606 (1086)
.|+|||+.|+..... .+...|++||+.+++......+ . ..+....|+|||+.|+..+. ...|+++|+.+++.
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999999999987643 3456899999998876544332 2 35677899999998876443 35688999988776
Q ss_pred EEEEcCCCCCCCCceEEEecCC
Q 001396 607 LTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.......+ .+...+|+|-.
T Consensus 408 ~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 408 RKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred EEeecCCC---cccCceecCCC
Confidence 55443222 35667787743
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=6.9e-10 Score=116.72 Aligned_cols=318 Identities=14% Similarity=0.184 Sum_probs=193.9
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-----------CC
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 593 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d 593 (1086)
.-+-+.|||.|.+|++-... -|.+|--.+...++.|.. ..|.-+.|||+.+||++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~-----GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ-----GIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEecc-----ceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 34678999999999998743 389998777666666653 4688999999999999854 22
Q ss_pred CcEEEEEcCCCeeEEEEcCCCC-CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 594 HVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 594 g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
..+.|||+.+|.....+..... ...-.-..||.|++++|.-.. .+|.||+...-..+..-..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl---------------- 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL---------------- 344 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc----------------
Confidence 5699999999999988876322 223345789999999988776 4688887664222211100
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecccee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 752 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 752 (1086)
....|....|+|.+..|+--+..
T Consensus 345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ------------------------------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 11234555566654433322111
Q ss_pred EEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEE
Q 001396 753 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 832 (1086)
Q Consensus 753 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~ 832 (1086)
+.. .. ..+.+..+.+++.+++
T Consensus 368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 000 00 1123333333333333
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEE----------eCCCeEEEEEcCCcee-EEEeccccCCeEEEEEeCCCCEEEEEeC-
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG- 900 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~s~s~- 900 (1086)
..-+.-.=..+-|-. .|.+|+.- +.=..+.|+.+..... +..+. -...|...+|-|.|..+++.+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence 222221112233433 44444432 1112456666655432 22222 4567888999999988877654
Q ss_pred --CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE----EeCCeEEEEEcCCccceeccccCCccC
Q 001396 901 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPISSVP 974 (1086)
Q Consensus 901 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~~d~~i~vwd~~~~~~~~~~~~~h~~~ 974 (1086)
..++.+|.+++. ......+..+... ....+.|||.|+++++ +..|.+..+|+.-..+...-...| ..
T Consensus 467 ~~k~tvsfY~~e~~-~~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~ 539 (698)
T KOG2314|consen 467 TVKNTVSFYAVETN-IKKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA 539 (698)
T ss_pred ccccceeEEEeecC-CCchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence 357899988852 2223344444432 3578999999999987 356889999988534333212223 35
Q ss_pred EEEEEEeCCCCEEEEEECCC
Q 001396 975 ISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 975 v~~l~fs~dg~~l~s~~~Dg 994 (1086)
.+.+.|.|.|+|++|++.-.
T Consensus 540 at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccceECCCCCEEEEeeehh
Confidence 57789999999999998644
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.6e-10 Score=130.05 Aligned_cols=235 Identities=11% Similarity=0.049 Sum_probs=145.7
Q ss_pred eeeeccCCCCceEeeecCCCceE--EEEEecc--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTL--LLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~l--la~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
.+.|..+...+..-+|||||+.+ +.+...+ ..|.+.++.+|+... +....+.....
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p 236 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMP 236 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccce
Confidence 34455555567788999999752 2344444 358888888886543 22233445678
Q ss_pred EECCCCCEEEEEeC-CC----EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE--eCCC-
Q 001396 397 VWSPDGSLLGVAYS-KH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVT- 468 (1086)
Q Consensus 397 ~~spdg~~las~~~-d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw--d~~~- 468 (1086)
+|||||+.||..+. +| .+.+|++.++..-.......++.+.....+|+|||+.+ +++...++...+| ++..
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L-af~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL-VFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECccc
Confidence 99999999998753 22 34457776532111111122233345678999999952 3333345654555 5432
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.....
T Consensus 316 g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~- 391 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN- 391 (428)
T ss_pred ccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-
Confidence 3334555555556666777 4577777766543 468999998877654433 23456778999999998876543
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 584 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 584 (1086)
.+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 392 ~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 3467899999988876554432 2 456667787753
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.3e-10 Score=132.86 Aligned_cols=229 Identities=13% Similarity=0.100 Sum_probs=145.6
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEecc--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
...+.+..+.+.+...+|||||++|+.+...+ ..|.+||+.+|+... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 33455666777899999999999754444333 368999999886543 22223445578
Q ss_pred EECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCce
Q 001396 397 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR 471 (1086)
Q Consensus 397 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~ 471 (1086)
+|||||++|+.. +.++ .|++||+.+++.. .+..+........|+|||+.+ +++...++ .|+++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCE
Confidence 999999998854 3444 6888899887532 244555567778999999952 33333333 588888888875
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcC-C--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
.. +...........| +++|+.++..+.+ + .|.+||+.+++....... .......|+|||+.++..... .+.
T Consensus 324 ~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~ 397 (430)
T PRK00178 324 ER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGR 397 (430)
T ss_pred EE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCc
Confidence 33 2212222233456 4566777766543 3 578889887765443222 222356899999999887653 345
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
..|++++...+ ..+.+..+. +.+...+|+|
T Consensus 398 ~~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 398 GVLMLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 67888887543 333444333 4566666765
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=7.4e-09 Score=113.85 Aligned_cols=248 Identities=15% Similarity=0.202 Sum_probs=161.3
Q ss_pred ccEEEEEECCCCCEEEEEeC----CCEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 391 VSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.....++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|+|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEE
Confidence 55677999999999999866 578999999875 333333333333445678999999994 334444689999999
Q ss_pred CCC-CceeEE---ee----------cCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcCCCce-e---EEe-cCCCCc
Q 001396 466 AVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGLG 525 (1086)
Q Consensus 466 ~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~-~---~~~-~~~~~~ 525 (1086)
+.. |..... +. .......++.+ +++++++++.. ....|.+|+++.... . ..+ ...+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 987 443322 21 11234566777 45667766654 456899999987652 1 122 344557
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCC--CCee--eeEEeccc---ccCCceEEEEEecCCCEEEEEE-CCCcEE
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVIK 597 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i~ 597 (1086)
...++|+|+++++++... ..+.|.++++. ++.. +....... ........++++|||++|+++. ..+.|.
T Consensus 194 PRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 889999999999988764 35568777777 4432 22222211 1112578899999999998865 567899
Q ss_pred EEEcC--CCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CCcEEEEECC
Q 001396 598 IWDMN--KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 646 (1086)
Q Consensus 598 iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 646 (1086)
+|++. +++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99994 333 3334443222 3588999999999998875 5789999774
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=2.3e-10 Score=113.18 Aligned_cols=357 Identities=14% Similarity=0.199 Sum_probs=213.3
Q ss_pred cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-----eeEEeecCC------------cceEEEeecccCCccEEE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 497 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 497 (1086)
.+-|.++.|..+|. +|++|..+|.|.++.-+... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45688999999999 89999999999999644322 223444453 357778888888888999
Q ss_pred EEEcCCeEEEEEcCCCceeE-----EecCCCCceEEEEE---ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 498 SISVDGKIKAWLYDSLGARV-----DYDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 498 s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
..+.|.+|++|.+....... ........++++.. .+....+. ..+.+.+..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN-- 161 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN-- 161 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence 99999999999887654433 11111222222221 11111111 112233322
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCC-----CCCCCceEEEec-CCCEEEEEECCCcEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGG-----GLPENPRICFNK-NGTLLAVIANENRIKI 642 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~-----~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 642 (1086)
.|...|+++.++.|...++++. |=.|.+|+++-- +......... -...|++..|+| ..+.++-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 2347899999999998888764 567999998732 2222222111 112467888999 4567788888999999
Q ss_pred EECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccccc
Q 001396 643 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 722 (1086)
Q Consensus 643 w~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 722 (1086)
-|++....-.. .-+++..
T Consensus 241 cDmR~~aLCd~-------------------------------------------------hsKlfEe------------- 258 (433)
T KOG1354|consen 241 CDMRQSALCDA-------------------------------------------------HSKLFEE------------- 258 (433)
T ss_pred eechhhhhhcc-------------------------------------------------hhhhhcc-------------
Confidence 99884321110 0001100
Q ss_pred CCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 723 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 723 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
|. .|..+- ... +--..|..+
T Consensus 259 pe------------dp~~rs------------------------------------------ffs------eiIsSISDv 278 (433)
T KOG1354|consen 259 PE------------DPSSRS------------------------------------------FFS------EIISSISDV 278 (433)
T ss_pred cc------------CCcchh------------------------------------------hHH------HHhhhhhce
Confidence 00 000000 000 123457778
Q ss_pred EeecCCCEEEEEeCCeEEEEEcc-CceEEEEEcCCC------------CCe---EEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001396 803 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 803 ~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd 866 (1086)
.|+++|+++++-+--+|++||+. ..+.+.+.+-|. +.| ..++|+- ++.++++|+....+++++
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 88888888888777889999883 455555554443 222 4678998 888999999999999999
Q ss_pred cCCceeE-EEeccccCC--eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCC
Q 001396 867 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 943 (1086)
Q Consensus 867 ~~~~~~~-~~l~~h~~~--v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 943 (1086)
+..|... .++...... ...+ ..-+.+.+++......+|-.. .+-. ..+...+|.|...
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf~----kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDFR----KKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhhh----hHHHhhccCCccc
Confidence 8766432 333332222 1111 112334444444332222110 0000 1367889999999
Q ss_pred EEEEEeCCeEEEEE
Q 001396 944 RFLLVHETHLAIYE 957 (1086)
Q Consensus 944 ~l~~~~d~~i~vwd 957 (1086)
.+|++.-+.+++|.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998777787763
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.1e-10 Score=132.43 Aligned_cols=227 Identities=14% Similarity=0.104 Sum_probs=142.0
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccC--cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+.+..+...+....|||||++++.+...++ .|.+||+.+|+.... ....+.....+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~w 269 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRF 269 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeE
Confidence 3455666778999999999997544443333 588899988865321 111223446899
Q ss_pred CCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeE
Q 001396 399 SPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTY 473 (1086)
Q Consensus 399 spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~ 473 (1086)
||||+.||.. +.++ .|++||+.+++.. .+..+.......+|+|||+.+ +++...++ .|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~I-~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKSL-IFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE
Confidence 9999988764 4555 4888888877532 244555567789999999952 33333333 57777888777543
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
+..........+| ++||++|+..+. ++ .|.++|+.++........ .......|+|||+.|+..... .+...
T Consensus 345 -Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~-~g~~~ 418 (448)
T PRK04792 345 -LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTY-QGKQV 418 (448)
T ss_pred -EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEec-CCceE
Confidence 2222222334566 456667766554 44 355567766654332221 122345899999999887653 34567
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
+++++. +|...+.+..+. +.+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 888887 455555565444 4566677776
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.1e-10 Score=128.89 Aligned_cols=223 Identities=14% Similarity=0.108 Sum_probs=142.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--c
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~ 460 (1086)
+..+...+...+|||||+.||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999887644 469999999876432 2333445567999999995 333454454 6
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
|.+||+.+++.. .+..+........|+ +||..++..+. +| .|.++++.+++..... ..........|+|||+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCE
Confidence 888899887653 455555555566674 46666665553 33 5777777666543322 22233445789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++..... ++...|.+||+.+++....... . ......|+|||+.++..+.+ ..++++++.. .....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence 9887643 2355799999998865332222 1 12245899999999886643 3467777754 3333443322
Q ss_pred CCCCCceEEEec
Q 001396 615 GLPENPRICFNK 626 (1086)
Q Consensus 615 ~~~~v~~v~~s~ 626 (1086)
..+...+|+|
T Consensus 418 --g~~~~p~ws~ 427 (430)
T PRK00178 418 --GEVREPSWSP 427 (430)
T ss_pred --CCcCCCccCC
Confidence 2355666765
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=4e-09 Score=106.59 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=172.1
Q ss_pred CCCCeeEEEeecCCCEEEEEe----CCeEEEEEccC--ceEE--EEEcCCCCCeEEEEEcCCCCCEEEEEeCC-CeEEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD-STILIY 865 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g~v~iw 865 (1086)
.....+-++++|+++.|.++. +|.|..|.+.. |+.. ........+-+.+++++ ++++|+++... |.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566788899999999988885 36788887764 4442 22222333448899999 89898888654 799999
Q ss_pred EcCC-ceeE--EEeccccCC----------eEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 866 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 866 d~~~-~~~~--~~l~~h~~~----------v~~l~~spdg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
-+.. |.+. .....|.+. +....|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9965 4332 122335555 88899999999999874 565 9999999877555444444333
Q ss_pred CCceEEEEecCCCEEEEE--eCCeEEEEEcCCc-cceeccc------cC--CccCEEEEEEeCCCCEEEEEEC-CCcEEE
Q 001396 931 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWF------PI--SSVPISQATFSCDCRMVFTSFV-DGTLSI 998 (1086)
Q Consensus 931 ~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~-~~~~~~~------~~--h~~~v~~l~fs~dg~~l~s~~~-Dg~v~v 998 (1086)
...+.|+|+|++++.-+. -+++|.+|.+... ..+..+. .. -......+..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999987763 5789999998863 1121111 11 1567788999999999997643 236888
Q ss_pred EEcCCCce-eeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-cEEEEccCCCCCCC
Q 001396 999 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTW 1061 (1086)
Q Consensus 999 Wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg-~v~vw~~~~~~~~~ 1061 (1086)
+.++...- +..+. +.+ .....|..+.++| ++++|+++..++ .|.++.+...-..+
T Consensus 271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEcCCCCEEEEEE---Eec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 87765422 22222 111 1234577889999 677777777664 79999987666543
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.2e-10 Score=127.74 Aligned_cols=223 Identities=15% Similarity=0.105 Sum_probs=141.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-- 460 (1086)
+..+...+.+.+|||||++|+..+.+ ..|++||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34466788999999999999987543 368999998876422 2222333457899999996 3344566664
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
|.++|+.+++. ..+..+.......+|++ |++.|+..+. ++ .|.++|+.+++..... .........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCE
Confidence 78889887764 44544555566677754 6666665543 44 4666677665543322 22223345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-C--cEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++..+.. .+...|.++|+.+++... +.... ......|+|+|++|+..+.+ + .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 234578889988886533 22211 12234799999998876543 3 3777776 455555555432
Q ss_pred CCCCCceEEEec
Q 001396 615 GLPENPRICFNK 626 (1086)
Q Consensus 615 ~~~~v~~v~~s~ 626 (1086)
+ .+...+|+|
T Consensus 437 g--~~~~p~Wsp 446 (448)
T PRK04792 437 G--EVKSPAWSP 446 (448)
T ss_pred C--CcCCCccCC
Confidence 2 356677776
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.7e-10 Score=117.32 Aligned_cols=333 Identities=13% Similarity=0.187 Sum_probs=197.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----------Cc
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------KT 460 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----------~~ 460 (1086)
.=+.+.|||-|.||++--..| |.+|--.+-..++ .+ .|.+ |.-+.|||..+ +|||-+.. ..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp~-Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHPG-VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCCC-ceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence 345799999999999997777 9999755433333 23 4654 88999999999 78887632 45
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
++|||+.+|...+.|....+ ..-.| .-..||.|++++|.
T Consensus 284 l~IWDI~tG~lkrsF~~~~~-----------------------~~~~W------------------P~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKS-----------------------PYLKW------------------PIFRWSHDDKYFAR 322 (698)
T ss_pred EEEEEccccchhcceeccCC-----------------------Ccccc------------------ceEEeccCCceeEE
Confidence 77788877777766642211 11112 12578899999887
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC-----CCcEEEEEcCCCeeEEEEcCCCC
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-----DHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
-.. ..|.||+..+..++.. ....-..|....|+|.++.|+.-+. -..+.+-.+.+++.+.+...+.-
T Consensus 323 m~~-----~sisIyEtpsf~lld~---Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 323 MTG-----NSISIYETPSFMLLDK---KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred ecc-----ceEEEEecCceeeecc---cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 653 3588888766443322 2222367888999999887776332 23466667777776666554321
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
.-..+-|-.+|.+|++--.. ..... ..+..
T Consensus 395 --sDckLhWQk~gdyLcvkvdR-------~tK~~-------~~g~f---------------------------------- 424 (698)
T KOG2314|consen 395 --SDCKLHWQKSGDYLCVKVDR-------HTKSK-------VKGQF---------------------------------- 424 (698)
T ss_pred --eccEEEeccCCcEEEEEEEe-------ecccc-------ccceE----------------------------------
Confidence 11345666778777653221 00000 00000
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc---ceeEEeeccCCccccCccccccc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKV 772 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 772 (1086)
..+.++.+...+ +......-...|-..+|-|.|..+++.+.+ .++.+|.+....
T Consensus 425 ------~n~eIfrireKd------Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~----------- 481 (698)
T KOG2314|consen 425 ------SNLEIFRIREKD------IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI----------- 481 (698)
T ss_pred ------eeEEEEEeeccC------CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------
Confidence 111222221110 000001123567888999999988877654 445555443210
Q ss_pred CCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe----CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC
Q 001396 773 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH 848 (1086)
Q Consensus 773 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 848 (1086)
+..-+...+ .....+.+.|+|.|++++.+. .|.+..+|+.-......-.......+.+.|.|
T Consensus 482 ---------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP- 547 (698)
T KOG2314|consen 482 ---------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP- 547 (698)
T ss_pred ---------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-
Confidence 000111111 234567899999999999885 57899999875333333333334668899999
Q ss_pred CCCEEEEEeCCC------eEEEEEcC
Q 001396 849 DNNVIAIGMDDS------TILIYNAR 868 (1086)
Q Consensus 849 d~~~lasg~~dg------~v~iwd~~ 868 (1086)
.|+++++++.-. --++|+++
T Consensus 548 tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 548 TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CCCEEEEeeehhhhccccceEEEEee
Confidence 999999987643 34555554
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=8.3e-11 Score=116.24 Aligned_cols=266 Identities=12% Similarity=0.207 Sum_probs=177.0
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeec-cccceeeeeeeecCCCccEEEEEECCCCC--
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI-GACSMLFKTALVRDPGVSVNRVVWSPDGS-- 403 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~spdg~-- 403 (1086)
..+-|.+|.|..+|.+ ||+|..+|.|.++.-..... . .++.+.. ....+.|....--.-+..|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccce-EeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 3468999999999995 99999999999997543221 0 1111100 00011111111112246799999998764
Q ss_pred EEEEEeCCCEEEEEEecCCCccc------------------c--------------ceE-eccccccEeEEEecCCCCcE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~v~~s~d~~~l 450 (1086)
.+...+.|.+|++|.+......+ . ... -.+|..-|.++.++.|+.
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-- 177 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-- 177 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--
Confidence 45666789999999986532211 0 001 136788899999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCceeE---Eeec-----CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee----EE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTY---SFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VD 518 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~---~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~ 518 (1086)
.++++. |=.|.+|+++--..-. .++. -...|++..|+|.. ...++-.+..|+|++.|++....- ..
T Consensus 178 t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 677665 8889999987433222 2222 23467888888764 457888889999999999843211 11
Q ss_pred ecCC------------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC-CCCeeeeEEeccccc---------CCce-
Q 001396 519 YDAP------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNSV- 575 (1086)
Q Consensus 519 ~~~~------------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~v- 575 (1086)
+..+ -..|..+.|+++|+++++-. -..|.+||+ ...+++.+++.|..- ...|
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 1111 12578899999999999864 357999999 456777777766521 1222
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 576 --SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 576 --~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
..++|+.++.++++|+....+++++...|.
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 357899999999999999999999966543
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=4.1e-10 Score=129.00 Aligned_cols=210 Identities=15% Similarity=0.084 Sum_probs=139.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--c
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~ 460 (1086)
+..+...+...+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566778999999999999988644 479999999875332 3345566778999999995 334444444 5
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
|++||+.++.. ..+..+........|+ +|++.|+..+. ++ .|.++|+.+++.. .+.........+.|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence 88999888764 3444454445556664 47777766654 33 5777787765533 33334456678899999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC---cEEEEEcCCCeeEEEEc
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 611 (1086)
++...... +...|.+||+.++... .+... .......|+|++++|+..+.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887533 3557999999886543 22221 1234567999999998876544 3555554 344444443
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=2.2e-10 Score=131.27 Aligned_cols=214 Identities=19% Similarity=0.142 Sum_probs=141.5
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
...+.+..+...+...+|||||++ ||.++.+ ..|.+||+.+++... +..+...+.+
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 334556667778999999999997 4544432 479999999886543 2234456778
Q ss_pred EEECCCCCEEEEE-eCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CCC--cEEEEeCCCC
Q 001396 396 VVWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 469 (1086)
Q Consensus 396 l~~spdg~~las~-~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d~--~i~iwd~~~~ 469 (1086)
++|+|||+.|+.. +.+ ..|++||+.+++.. .+..+........|+|||+. |+..+ .++ .|.++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 333 35889999876532 23445555667899999994 44433 233 5888898777
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+. ..+..+...+....|+ +++.+++.++.++ .|.+||+.++...... .. .......|+|||+.|+.....+
T Consensus 313 ~~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EV-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CE-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEEeCC-
Confidence 64 3444455556666774 4677888887776 7888998875443322 21 2334568999999998877533
Q ss_pred CceeEEEEeCCCCeeeeEEe
Q 001396 547 GESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~ 566 (1086)
+...+++.+.. +.....+.
T Consensus 387 ~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CcEEEEEEECC-CceeeECC
Confidence 34567777644 44444443
No 268
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.8e-10 Score=113.79 Aligned_cols=162 Identities=19% Similarity=0.334 Sum_probs=114.9
Q ss_pred EEEEECCCCCEEEEEeC----------CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 394 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
..+.|+|+|++|+.-.. -+...+|.++..........+ ...++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999998876533 134666666443322221122 2345799999999999766666777889999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
||++ ++.+..+. ...++.+.|+ |+|++|++++.+ |.|.+||.++.+.+..... ..++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEE
Confidence 9986 77777764 5677888885 477899988754 6799999997666655443 35789999999999999
Q ss_pred EeeC--CCCceeEEEEeCCCCeeeeE
Q 001396 541 CGTS--KEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 541 ~~~~--~~~~~~i~iwd~~~~~~~~~ 564 (1086)
+... -..+..+.||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8753 1245678999975 555443
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=2.9e-11 Score=119.60 Aligned_cols=358 Identities=15% Similarity=0.137 Sum_probs=229.3
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE--EecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
..++.++||.+.++....-+..+ -+++.+.|.++|+|--+...+.. .......+++++.+.++.+.|+.+-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567789999898887766555 59999999999999554433322 22334557899999999999999876
Q ss_pred ceeEEEEeCC----CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 548 ESFLVEWNES----EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 548 ~~~i~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
.+.+.-+.+. .....+.+..|. ..+..+-|+....++++.+.|..+.---.+.+..+........ ..++.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 4556666443 445566667777 8999999999999999999988775544555554433322111 11112
Q ss_pred EecCCCEEEEEECCCcEEEEECC--CCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 624 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
+.-. +..+|...|.|....+. .-..+..+.+|.+.+.++.+. +....+.++..|
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d 218 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD 218 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence 2111 55666666777766554 346788899999999999997 567789999999
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc-----cccCCce
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT-----TKVPPRL 776 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~~ 776 (1086)
..+.+||+.......... .+|...|..+...+--+.+++++.||.|.+|+++........... .-..+..
T Consensus 219 ~~vi~wdigg~~g~~~el-----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff 293 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYEL-----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF 293 (404)
T ss_pred CceEEEeccCCcceeeee-----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence 999999987554443332 458888999998888999999999999999999876543222221 1123344
Q ss_pred ecCCCCCceeeecCCCC--CC-CCCeeEEEeecCCCEEEEEeCCeEEEEEcc-------CceEEEEEcCCCCCeEEEEEc
Q 001396 777 YQPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN 846 (1086)
Q Consensus 777 ~~~~~g~~~~~~~~~~~--~~-~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 846 (1086)
|+...........+... .+ ...+...+-+.-..+...+..-.+|+-|.- +...+..+......|+++.+.
T Consensus 294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq 373 (404)
T KOG1409|consen 294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ 373 (404)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence 44322110111111000 01 112222222222222222323344544431 112233443444678999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC
Q 001396 847 PHDNNVIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 847 ~~d~~~lasg~~dg~v~iwd~~~ 869 (1086)
. .-.+|++++.|..|+|||+..
T Consensus 374 e-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 E-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred h-hccceeecCCceEEEEEechh
Confidence 8 667999999999999999874
No 270
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.5e-10 Score=115.34 Aligned_cols=251 Identities=10% Similarity=0.126 Sum_probs=183.7
Q ss_pred CCccEEEEEECCCCC--EEEEEeCCCEEEEEEecCCCccccc---eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 389 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQ---LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 389 h~~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~---~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
....|..++|.-|++ .|..++.+..+....+......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 346788888876654 4555556667777777766544321 1223445667777665 44 5888899999999
Q ss_pred EeCCCCc----eeEEeecCCcceEEEeecccCCccEEEEEEcC--CeEEEEEcCCCceeEEecCCCC---------ceEE
Q 001396 464 WDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGL---------GCTR 528 (1086)
Q Consensus 464 wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~---------~i~~ 528 (1086)
|..+.+. .+..+..+ ..+..+.-++. ....+++|+.. ..+.+||+...+.++.-..... .++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9988543 23333333 34444443322 33467779999 8899999998865554433222 4678
Q ss_pred EEEecC--CCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 529 MAYSAN--GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 529 ~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+.|-+. ...+++++. -+++++||.+.+ +++..+.... .++.++...|.++++++|..-|.+..||.+.++
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE---NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc---CcceeeeecCCCcEEEEecccchhheecccCce
Confidence 889887 888999886 678999999865 5667776666 899999999999999999999999999999999
Q ss_pred eEEE-EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 606 LLTT-IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 606 ~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
.... +.+- ...+.++..+|.++++++++-|..++|+|+++...+...
T Consensus 281 l~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 281 LLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8877 5443 345899999999999999999999999999986555443
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=7.3e-10 Score=118.44 Aligned_cols=194 Identities=12% Similarity=0.183 Sum_probs=155.9
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEec------C------------CCCcEEEEEEeCCCc
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 460 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s------~------------d~~~l~l~s~~~d~~ 460 (1086)
.|-+.|+|....||.++|||+..++..........-++.-++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3457799999999999999999987544332222233344444442 2 123337888999999
Q ss_pred EEEEeCCCCceeEEee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEE
Q 001396 461 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 538 (1086)
|.++++..|+....+. .|.+.|.++.++ .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888875 599999999874 355689999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-----CCEEEEE-ECCCcEEEEEcCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK 603 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 603 (1086)
++++. +|.+||+++++.+..|.||. ++|+++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98854 69999999999999999999 99999999887 7777774 4556677886654
No 272
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.26 E-value=5.3e-10 Score=110.47 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=112.1
Q ss_pred eEEEecCCCCcEEEEEEe--------CCCcEEEEeCC-CCceeEEeec-CCcceEEEeecccCCccEEE--EEEcCCeEE
Q 001396 439 NDLAFSAPCKQISVITCG--------DDKTIKVWDAV-TGSRTYSFEG-HGAPVYSLCPHAKENIHFIF--SISVDGKIK 506 (1086)
Q Consensus 439 ~~v~~s~d~~~l~l~s~~--------~d~~i~iwd~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~--s~s~dg~i~ 506 (1086)
..+.|+++|+.+++.+.. .-+...+|-++ .+.....+.- ..++|.+++|+|+ |..++ .|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccE
Confidence 357899999975444441 12234555542 2334444433 3457999999764 44543 445678999
Q ss_pred EEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE
Q 001396 507 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 586 (1086)
Q Consensus 507 vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 586 (1086)
+||++ ...+..+ ....+..+.|+|+|+++++++.+ ...+.|.+||.++.+.+..... ..+..++|+|+|++
T Consensus 87 lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 87 LYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKKKISTFEH-----SDATDVEWSPDGRY 157 (194)
T ss_pred EEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCEEeecccc-----CcEEEEEEcCCCCE
Confidence 99996 3444443 45677889999999999998753 2357899999998888776653 45789999999999
Q ss_pred EEEEE------CCCcEEEEEcCCCeeEEEEc
Q 001396 587 ILAAG------DDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 587 l~~~s------~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++++ .|+.++||+.. |+.+....
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99976 47889999984 66655543
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=1.9e-08 Score=113.04 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=113.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
.++.++.++.+..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5777888999999999999998776544332222222 345788899999999999999888776654432221122
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce-----EEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
. .+..++.+.. ++.++.||..+|+.+-.+.... ..+ .+.... +..++.+..+|.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2344555443 6779999999998877665432 111 111121 2467888889999999999998
Q ss_pred eEEEEcCCCCC--CCC---ceEEEec--CCCEEEEEECCCcEEEEECCCC
Q 001396 606 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 606 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.+......... ..+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77654322110 000 0000011 2445666666777777766554
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.4e-09 Score=113.41 Aligned_cols=189 Identities=14% Similarity=0.222 Sum_probs=147.6
Q ss_pred cCCCEEEEEe-CCeEEEEEccCceEEEEEcCC---CCCeEEEEEc------C-------------CCCCEEEEEeCCCeE
Q 001396 806 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAFN------P-------------HDNNVIAIGMDDSTI 862 (1086)
Q Consensus 806 ~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~s------~-------------~d~~~lasg~~dg~v 862 (1086)
|-..++|... ||.+++|+...++....+... .+..++..|. | .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 799999999999888777532 2233333331 1 155688889999999
Q ss_pred EEEEcCCceeEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 863 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 863 ~iwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.+|+...|+....+. .|.+.|.++.++.+-..|.|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999988886 599999999999999999999999999999998743 3333333332 588999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCC-----CCEEEE-EECCCcEEEEEcCCC
Q 001396 941 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASNL 1004 (1086)
Q Consensus 941 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~s-~~~Dg~v~vWd~~~~ 1004 (1086)
||+.|+++ .++|++||+++++.+.. ++||.++|..+.|..+ |.++++ ...+.-+.+|-+...
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99988764 47899999999999987 7899999999999887 666654 445566888887663
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=8.6e-08 Score=107.79 Aligned_cols=267 Identities=14% Similarity=0.099 Sum_probs=169.7
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.+|.|.-+|..+|+.+-...+. + ......+ .++..+++++.++.++.+|..+|+
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLD-----------------E--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCC-----------------C--CcccceE--EcCCEEEEEcCCCEEEEEECCCCc
Confidence 677788899999999999987543321 1 1011122 257788888899999999999988
Q ss_pred ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE-----EEeecccCCccEEEE
Q 001396 424 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY-----SLCPHAKENIHFIFS 498 (1086)
Q Consensus 424 ~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~l~s 498 (1086)
.+... .. .+.+.+.-.. .+. .++.++.++.+..||.++|+.+..+......+. +..+ . + ..++.
T Consensus 127 ~~W~~---~~-~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~~v~~ 195 (377)
T TIGR03300 127 ELWRA---KL-SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-GGVLV 195 (377)
T ss_pred Eeeee---cc-CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-CEEEE
Confidence 65422 11 1222211111 233 456677799999999999998877654332211 1111 1 2 36788
Q ss_pred EEcCCeEEEEEcCCCceeEEecCCCC----c------e-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 499 ISVDGKIKAWLYDSLGARVDYDAPGL----G------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~~~~~~~~~~~~----~------i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
+..+|.+..+|..+++.......... . + ....+ .+..++.++. ++.++.+|..+|+.+-....
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~----~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY----QGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc----CCEEEEEECCCCcEEEeecc
Confidence 88899999999988877654332110 0 0 01111 2445665554 56799999999987665542
Q ss_pred ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
. ...... ..+..++.++.+|.++.+|..+|+.+........ ........ .+..+++++.+|.+.++|..+
T Consensus 270 ~-----~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 270 S-----SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY-RQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred C-----CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC-CccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 1 111222 3467888899999999999999988766532111 11122222 367899999999999999999
Q ss_pred CCeeeeccccc
Q 001396 648 SNSVDAAGVLS 658 (1086)
Q Consensus 648 ~~~~~~~~~~~ 658 (1086)
++.+.....+.
T Consensus 340 G~~~~~~~~~~ 350 (377)
T TIGR03300 340 GSFVARLKTDG 350 (377)
T ss_pred CCEEEEEEcCC
Confidence 98887766444
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=1.3e-08 Score=99.09 Aligned_cols=252 Identities=15% Similarity=0.116 Sum_probs=162.1
Q ss_pred CCceEeeecC---CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc---cEEEEEECCCC
Q 001396 329 SSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDG 402 (1086)
Q Consensus 329 ~~V~~~~~sp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg 402 (1086)
..+..+.|.- +|...++-+..+|.|.++.....+.... ++ + +..-.- .--++.|++.|
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTSG 133 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeeccC
Confidence 3667777753 4554566677778888887654332211 10 0 111111 24478899999
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEE-eecCCc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGA 480 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~ 480 (1086)
..++++..+|.+.+-+..... +.....+++|....+-+.|+..... ++.+||+|+.+..||++ .++.+.. .+.|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999998855544433 3333367899999999999877766 79999999999999998 4445543 567889
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC--CEEEEEeeCCCCceeEEEEeCCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
.|.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.- +.|++|-.++ ..+-+.+.
T Consensus 212 GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~ 285 (339)
T KOG0280|consen 212 GVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSD 285 (339)
T ss_pred ceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEecc
Confidence 9999887654 67899999999999999999766555445556789999998843 3444443322 33333332
Q ss_pred --CeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEE-EEEcCCC
Q 001396 559 --GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 604 (1086)
Q Consensus 559 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 604 (1086)
.+....+..+..|.+-...-.|......+++++ .|+.++ +|-..++
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 221122222222225555555544345577755 566644 6654443
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=3.9e-08 Score=109.77 Aligned_cols=206 Identities=14% Similarity=0.018 Sum_probs=131.1
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+.+.... .+..-.|||||+++++..+.+ ..|.++|+.+|+... +....+.+...+
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~ 239 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD 239 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence 34344333 778899999998645544433 569999998887654 222445566788
Q ss_pred ECCCCCEEEEEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCcee
Q 001396 398 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 472 (1086)
Q Consensus 398 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~ 472 (1086)
|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++++. ..+ .|.+.|+.+|+..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeE
Confidence 9999998876532 35688889887753 2 23334333445689999997444432 223 6888898888764
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcC---------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+... .... ...| ++||+.|+..+.. ..|.+.|++++....... . .......|+|||+.++....
T Consensus 315 rlt~-~g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 315 QVVF-HGKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eCcc-CCCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C-CCcCCeEECCCCCEEEEEEc
Confidence 3332 1111 2355 5577777666543 267778887766543322 2 23346889999999988765
Q ss_pred CCCCceeEEEEeCCCCe
Q 001396 544 SKEGESFLVEWNESEGA 560 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~ 560 (1086)
. .+...+.+.++....
T Consensus 388 ~-~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 388 L-GNQSALGIIRLNYNK 403 (419)
T ss_pred c-CCcEEEEEEecCCCe
Confidence 4 345668888876543
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=2e-07 Score=115.91 Aligned_cols=260 Identities=12% Similarity=0.083 Sum_probs=161.9
Q ss_pred EEEEEecC-CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCE
Q 001396 732 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 810 (1086)
Q Consensus 732 ~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 810 (1086)
..++++++ +..+++-..++.|++++.........+.... .....|. +. .+.-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45778764 5556666667888888764321100000000 0000010 00 012234578999999887
Q ss_pred EEEEe--CCeEEEEEccCceEEEEEcCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 811 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 811 l~~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
|.++. ++.|+++|..++.. .++.+. -..-..++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 76665 47799999877653 333110 11236799999667777777888999999998765
Q ss_pred eEEEecc---------c------cCCeEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeeee--------eecc---C
Q 001396 872 VISKLEG---------H------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTP---D 924 (1086)
Q Consensus 872 ~~~~l~~---------h------~~~v~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~---~ 924 (1086)
.. .+.+ + ......|+++||++. +++-+.++.|++||+.++......- +... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 2211 1 123567999999984 5555667899999998765321000 0000 0
Q ss_pred CC--ccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceecccc------------CCccCEEEEEEeCCCCEEEE
Q 001396 925 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------ISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 925 ~~--~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------------~h~~~v~~l~fs~dg~~l~s 989 (1086)
+. .........++++++|..+++ ..+++|++||..++......-. +.-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000013468999999997777 6788999999987765432111 11235778999999999998
Q ss_pred EECCCcEEEEEcCCCce
Q 001396 990 SFVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 990 ~~~Dg~v~vWd~~~~~~ 1006 (1086)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=1.5e-07 Score=92.63 Aligned_cols=205 Identities=19% Similarity=0.171 Sum_probs=140.9
Q ss_pred EEeecCCCEEEEEeCCeEEEEEccCc--eEEEE---EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 802 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 802 l~~s~dg~~l~~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
++.++||++||+..|..|.|-..++. ..+.+ -+.....-+.++||| |+.+||.+...|+|+++|+...+ +..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 67889999999999999888876542 12222 223334568999999 99999999999999999998543 3333
Q ss_pred cc-------ccCCeEEEEEeCCC------CEEEEEeCCCcEEEEECCCC---ceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 877 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGW---GIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 877 ~~-------h~~~v~~l~~spdg------~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.. -..+|..+.|.+-. ..|+....+|.++=|-+..+ .-.....+....... ..|.++.+.|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 32 22467777776532 24566677888887776432 212222233222222 3799999999
Q ss_pred CCCEEEEEe-----C-------CeEEEEEcCCccceec--------------------cc--------cCCccCEEEEEE
Q 001396 941 DQTRFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATF 980 (1086)
Q Consensus 941 dg~~l~~~~-----d-------~~i~vwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~f 980 (1086)
..++|++++ + -.+..|.+-++..-.. +. ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 999988841 1 1367777644321110 00 112678899999
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 981 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 981 s~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
||||+.||+...+|.|.+|++++.++.+.+.
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999999988776
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=3e-07 Score=114.35 Aligned_cols=255 Identities=12% Similarity=0.096 Sum_probs=160.3
Q ss_pred eEEEeecCCCEEEEE-e-CCeEEEEEccCceEEEEEcC--C------------CCCeEEEEEcCCCCCEEEEEe-CCCeE
Q 001396 800 PCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 862 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~-~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v 862 (1086)
..+++++++..+.++ . ++.|+++|.. +..+..+.. . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 468898865444444 3 5889999986 444444432 1 12357899998 566555544 45789
Q ss_pred EEEEcCCceeEEEeccc-----------------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeee---ee
Q 001396 863 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 921 (1086)
Q Consensus 863 ~iwd~~~~~~~~~l~~h-----------------~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~ 921 (1086)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887643 333210 12346799999 56677777888999999998765322100 00
Q ss_pred ccCCCc---cCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccceecc------------ccC--------CccCEE
Q 001396 922 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS 976 (1086)
Q Consensus 922 ~~~~~~---~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~------------~~~--------h~~~v~ 976 (1086)
...+.. ........++|+|+|+.|.+ +.++.|++||+.++...... +.. .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 00124567999999986655 46789999999876532100 000 011346
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccc-cCCC--CccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 977 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 977 ~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
.++++++|..+++-+.+++|++||..++........... ...+ ....-..|..++++| +|+.+++-+.++.|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999888888999999999998876643321100 0000 001113567899999 688888888899999999
Q ss_pred cCCCC
Q 001396 1054 PNEPG 1058 (1086)
Q Consensus 1054 ~~~~~ 1058 (1086)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96643
No 281
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.7e-08 Score=111.42 Aligned_cols=507 Identities=13% Similarity=0.122 Sum_probs=257.6
Q ss_pred CceEeeecCCCceEEEEEec----cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.-+...|+|... ++|+++. .|+|.||- ++|++....+++ -.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHH
Confidence 445678999987 6888874 47888885 566654432211 235569999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE--eecC--Ccc
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAP 481 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~--~~~h--~~~ 481 (1086)
|.|..-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++++..-|.+.+|....-..++. +-.| ...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ 149 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ 149 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhce
Confidence 999999999999988754322 3457999999999999999 899999999999998763222211 1122 233
Q ss_pred eEEEeecccCCcc------EEEEEEcCCeEE-EEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 482 VYSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 482 v~~~~~~~~~~~~------~l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
++-++|.-+.++. ..++.+.+..+- .+++.......... -.=.|+|..++.++. +|.|+-.
T Consensus 150 ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyv 217 (1416)
T KOG3617|consen 150 LTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYV 217 (1416)
T ss_pred eeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEE
Confidence 4444443333321 123333333332 33332111100000 011367777777765 5567766
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc-CC----------------------------Ce
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQ 605 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~----------------------------~~ 605 (1086)
|- .|+......... .| .+-|.+...-+++.-.+-++.++-. .+ |-
T Consensus 218 dq-~g~~~~V~k~dS----~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv 291 (1416)
T KOG3617|consen 218 DQ-NGRQRTVHKLDS----EV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV 291 (1416)
T ss_pred cC-CCcEEEEEEccc----hH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence 63 344333332211 10 1112221111221111111111111 00 10
Q ss_pred eE--EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC-------eeeecc---ccccceeeeEEccCCCce
Q 001396 606 LL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-------SVDAAG---VLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 606 ~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~---~~~~~v~~~~~~p~~~~~ 673 (1086)
+. ..+.. .....+.+++++..+..+..|...|.+.+|.-.... ....+. ...+.|..+.|+|..+.+
T Consensus 292 Lr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 292 LRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA 370 (1416)
T ss_pred ccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence 00 00111 112357899999999999999999999999654321 111111 222334444454433322
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
++.+....+.+... ++. ..|.....++.-+.+.-
T Consensus 371 avn~~~~v~ll~E~-------------------------------~l~---~~h~~~~~A~q~ss~S~------------ 404 (1416)
T KOG3617|consen 371 AVNTEEDVVLLGEN-------------------------------SLT---VKHRGKMAAIQTSSNSF------------ 404 (1416)
T ss_pred hhhhhhheeeeccC-------------------------------chH---HHHhhhhHHhhhcCCce------------
Confidence 22111111111000 000 00111111111111110
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEE-
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT- 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~- 832 (1086)
.+-...+|.... + ...-++..++.+. ..+++..+.+|..|++.+......
T Consensus 405 ---------------------~L~hc~sGv~~~---l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~ 455 (1416)
T KOG3617|consen 405 ---------------------TLLHCTSGVSQD---L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATI 455 (1416)
T ss_pred ---------------------EEEeeccchhhh---h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHH
Confidence 010111111000 0 0122334444433 356666677888999864321111
Q ss_pred -EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001396 833 -IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 833 -~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 909 (1086)
........++++.. +.++...++++ |.++.+. |...+. +..-.+.|.-+.++ |.+++.....+.++-+|+
T Consensus 456 ~~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dv 528 (1416)
T KOG3617|consen 456 QCTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDV 528 (1416)
T ss_pred hhhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhh
Confidence 11122233444444 34455556544 5555444 333322 23344555555554 789998888888888888
Q ss_pred CCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE---EeC----CeEEEEEcCCccce
Q 001396 910 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 964 (1086)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~---~~d----~~i~vwd~~~~~~~ 964 (1086)
...+.......+...+.....+.+..+..+..|..+.+ ..+ .++.+||.+++...
T Consensus 529 sr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 529 SRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 87665544444444444444467788888887776554 222 47999999877643
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=6.5e-09 Score=108.94 Aligned_cols=205 Identities=15% Similarity=0.236 Sum_probs=148.4
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-------ceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-------GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+..+.||+..|..++-.. +..-+++++.|++|++|.++.. .+..++..|..+|..+.|-.+-++++++
T Consensus 728 L~nf~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec---
Confidence 567889999998886533 4457999999999999988643 3677889999999999999999999998
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec--CCCEEEEE-ECCCcEEEEEcCCCeeEEEEcC---CCCCCC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAA-GDDHVIKIWDMNKVQLLTTIDA---GGGLPE 618 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~---~~~~~~ 618 (1086)
|+-|.+||.--|+++........+ +.+..+..-+ +...+++| +...+|+++|.+.++....+.. .+...-
T Consensus 803 ---D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 803 ---DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred ---cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 567999999888776644332211 2222222223 34445554 7889999999998877665542 333445
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceec
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 698 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 698 (1086)
+.+++..+.|+.++++-.+|.|.+.|.+++..+...+...-....++ .|..+.++..
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-----------------------apsdq~L~~s 935 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-----------------------APSDQALAQS 935 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-----------------------CchhHHHHhh
Confidence 78999999999999999999999999999977665543222211111 3556667777
Q ss_pred cccCccce-ee
Q 001396 699 EAENKSEV-EK 708 (1086)
Q Consensus 699 ~~d~~i~v-w~ 708 (1086)
..|.++.+ |.
T Consensus 936 aldHslaVnWh 946 (1034)
T KOG4190|consen 936 ALDHSLAVNWH 946 (1034)
T ss_pred cccceeEeeeh
Confidence 77777777 76
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=2.6e-09 Score=127.15 Aligned_cols=201 Identities=16% Similarity=0.259 Sum_probs=161.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3345678889999999999999999999999999998877655432 33 8999999999999 677888899999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEE---EcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEE
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+. .++....+.|........|.. ..++++ +.++.+.+||.--... -.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 677777888988888887754 356665 3568899998654332 22337888999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
+. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..++.
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 87 66799999998887766653 33 457899999999999999999888777754
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=4.4e-09 Score=110.18 Aligned_cols=294 Identities=10% Similarity=0.107 Sum_probs=185.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC-ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+..+.||+..|..++--.+.+. +++++.|++|++|.++.. ..+.+ ++|... +..|..+|..+.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~igf 792 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIGF 792 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccceee
Confidence 45667899999999887666654 789999999999998652 22211 222222 5679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
-.|-+++|++ ||-|++||.--|..+.+...-..| +.+..+..-++ .+.++++.++...+|+++|.+.++....++.
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9999999887 777999998877765543222222 23333433343 3443555568899999999999887766643
Q ss_pred -----CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 478 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 478 -----h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
..+.+.++++.+ .|..++.+-..|.|.+.|.+++..+..+.........++- |..+.++.... +..+.
T Consensus 870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal----dHsla 942 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL----DHSLA 942 (1034)
T ss_pred ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc----cceeE
Confidence 445678888854 5678999999999999999998877666544433333332 44444544332 44566
Q ss_pred E-EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC----CeeEEEEcCCCCCCCCceEEEecC
Q 001396 553 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 553 i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+ |....|......+... .+..- .-.-|..++++.....+.+|--.. ...+..+....-....++++.-|-
T Consensus 943 VnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred eeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence 6 7766665444433322 11111 112355677776666677774211 112223332222223567777776
Q ss_pred CCEEEEEECCCcEEE
Q 001396 628 GTLLAVIANENRIKI 642 (1086)
Q Consensus 628 ~~~l~~~~~dg~i~i 642 (1086)
..-+..|...|.|.+
T Consensus 1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhccCCCCceee
Confidence 666667777777765
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=1.4e-07 Score=92.06 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=147.8
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC---CCC-EEEEEeCCCEEEEEEecCCCccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP---DGS-LLGVAYSKHIVQLYAYHGGSDAR 426 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg~-~las~~~d~~i~iwd~~~~~~~~ 426 (1086)
|.+.+|++...+......+ .......+..+.|+. +|. .|+-+-.+|.|.++.....+...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~----------------q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTL----------------QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV 109 (339)
T ss_pred cceEEEeecccccCcccee----------------eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence 5677777766555431111 111234556666653 455 56667778899999876543322
Q ss_pred cceEeccccc---cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee--EEeecCCcceEEEeecccCCccEEEEEEc
Q 001396 427 QQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISV 501 (1086)
Q Consensus 427 ~~~~~~~h~~---~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 501 (1086)
.+..+..-.- .-.++.|++-+. -++++-.+|.+.+-+...+... ++++.|.-+.+...|+.. +.+++++|+.
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgD 186 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGD 186 (339)
T ss_pred eecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCC
Confidence 1111221111 234678888888 5788888999986665555444 488999999999998744 4479999999
Q ss_pred CCeEEEEEcCCCc-eeEE-ecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEE
Q 001396 502 DGKIKAWLYDSLG-ARVD-YDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 502 dg~i~vwd~~~~~-~~~~-~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~ 577 (1086)
|+.+..||++..+ .+.. .+.|...|.++.-+| ++.++++|+. +..|++||.+ -++++..-.. .+.|..
T Consensus 187 D~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v----~GGVWR 258 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV----GGGVWR 258 (339)
T ss_pred CceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc----ccceEE
Confidence 9999999999433 3333 345677888888776 6778999887 5679999998 4555433322 268999
Q ss_pred EEEecCCC-EEEEEECCCcEEEEEcCCCe
Q 001396 578 VHFDTAKD-QILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 578 ~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+.++|.-. .++.+..-.-.+|-+...+.
T Consensus 259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred EEecchhhhHHHHHHHhcCceEEEecccc
Confidence 99998643 23333333445666665543
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=8.1e-07 Score=99.33 Aligned_cols=197 Identities=13% Similarity=0.020 Sum_probs=124.3
Q ss_pred cEEEEEECCCCCE-EEEEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC--CcEEEEe
Q 001396 392 SVNRVVWSPDGSL-LGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWD 465 (1086)
Q Consensus 392 ~V~~l~~spdg~~-las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d--~~i~iwd 465 (1086)
.+....|||||+. ++..+. +..|+++|+.+++... +....+......|+|||+.+ +++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~l-a~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSKL-LLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCEE-EEEEccCCCcEEEEEE
Confidence 7778999999985 665443 3579999998876432 33345556778899999963 3444433 4688889
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+.+++. ..+..+........| ++||+.|+..+. .+ .|.+.|+.+++....... ... ...|+|||+.++...
T Consensus 264 l~~g~~-~~LT~~~~~d~~p~~--SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 264 TNTKTL-TQITNYPGIDVNGNF--VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred CCCCcE-EEcccCCCccCccEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEE
Confidence 887764 444444432333456 557766665553 33 577778877665333221 111 248999999998877
Q ss_pred eCCC-----CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCC
Q 001396 543 TSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKV 604 (1086)
Q Consensus 543 ~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~ 604 (1086)
...+ +...|++.|+.++.... +.... ......|+|||+.++..+.+ ..+.+.++...
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRR-LTANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEE-CCCCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5332 22578999998886533 33221 22357899999988776533 23566666543
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=8.1e-09 Score=123.07 Aligned_cols=226 Identities=13% Similarity=0.176 Sum_probs=167.8
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-CCc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 480 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~ 480 (1086)
+...+....+++..-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....+..+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444455555565554332 2334556788888888877 899999999999999999988877743 336
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
.|+.+.|+ .+|..+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-..
T Consensus 2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 78888774 467789999999999999876 455667777887777777766 66777776655 7789999965221
Q ss_pred e-eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 561 I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 561 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
. -..-..|. +.++++++.|..+.+++|+.+|.|++||++..++++.++. +. ...++++|+..|.
T Consensus 2327 ~~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ccceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 1 11114444 8999999999999999999999999999998888777653 22 3568999999999
Q ss_pred EEEEECCCCCeeeecc
Q 001396 640 IKILETPESNSVDAAG 655 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~ 655 (1086)
++||++..-..+..+.
T Consensus 2392 ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEEccccchhhcCc
Confidence 9999999776555544
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=2.3e-08 Score=102.18 Aligned_cols=165 Identities=21% Similarity=0.167 Sum_probs=116.1
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 408 (1086)
.++.+..+|+++ ++|++..+....++++...... .+.++.. -.. ..-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~---~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVP---KRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecc---cCcceeeeeeccceEEEEe
Confidence 556677888887 6899888888777777655431 1111110 011 223344444444444444
Q ss_pred --eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCCcceEEE
Q 001396 409 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 485 (1086)
Q Consensus 409 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~ 485 (1086)
++...+.+|....+.+. .+-||-..+++++|+||++ +++++..|..|+|-.......+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 45556777776654433 3559999999999999999 8999999999999877666555554 5799999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
+..+ +..|+++|.|++|++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9753 3579999999999999999988775443
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=3.8e-06 Score=94.77 Aligned_cols=212 Identities=10% Similarity=0.047 Sum_probs=122.9
Q ss_pred eCCeEEEEEccCceEEEEEcCCCCCe-----EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccC-------C
Q 001396 815 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------R 882 (1086)
Q Consensus 815 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-------~ 882 (1086)
.+|.+..+|..+|+.+.......... .+.... ++ .++.++.+|.+..+|..+|+.+........ .
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 35677777777777776664321110 111222 23 466677899999999999987665431100 0
Q ss_pred eEEEEEeC--CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCC
Q 001396 883 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 960 (1086)
Q Consensus 883 v~~l~~sp--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~ 960 (1086)
...+.-+| .+..++.++.+|.+..+|..+++..-... .+. ...+.. .++...+...++.+..+|..+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~------~~~~~~-~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS------VNDFAV-DGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC------ccCcEE-ECCEEEEEcCCCeEEEEECCC
Confidence 11111122 24566677789999999999876432111 111 111221 234444447789999999998
Q ss_pred ccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001396 961 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1040 (1086)
Q Consensus 961 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1040 (1086)
|+.+-...........+... .+.+|+.++.||.+.+.|..+|+.+.+..... ..+... .... ++.|
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~-P~~~---~~~l 379 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSE-PVVA---DDKL 379 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeC-CEEE---CCEE
Confidence 87653211110111222222 24567788999999999999999988775211 011110 1111 3589
Q ss_pred EEEeCCCcEEEEcc
Q 001396 1041 AVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1041 ~~~~~dg~v~vw~~ 1054 (1086)
++++.||.|+.+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 99999999998875
No 290
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.86 E-value=0.00058 Score=78.72 Aligned_cols=582 Identities=10% Similarity=0.060 Sum_probs=281.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC----
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 401 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---- 401 (1086)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-....... ...+. + ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence 555566777777888 48888886665666554433221000 00000 1 12246776665432
Q ss_pred CCEEEEEe---CCCEEEEEEecCCCccccceEeccccccEeEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 402 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 402 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~--~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+..+++|+ .||+++|..-.-+-.......+.| -..++.+. +.+.-.. +++.+- -+.-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf-~~eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSF-ISETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEe-ccceEEEEEccceEEeccc
Confidence 34566654 578899886544322222223444 33466666 4433222 233222 2233444432221111112
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+.......+..+.- +++.|+-.. ...||+++-. .....+..+.+ ++....+.+...++.++. .+.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222222222211 222222222 2345665433 23333333433 333333444445555442 344555565
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCC------CEEEEEECCCcEEEE-EcCCCeeEEEEcCCC--CCCCCceEEEecC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGG--GLPENPRICFNKN 627 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~--~~~~v~~v~~s~~ 627 (1086)
..+......+.. -...|.|+.++|-+ ++++.|..+..+.+. -..+...+....... -...+....|-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 555432222221 24689999998752 266777766554443 333333333322221 1122444555567
Q ss_pred CCEEEEEECCCcEEEEECC--CCCeeeecc--ccccceeeeEEcc---------CCCceeccccCCeeeecCCC------
Q 001396 628 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSVNP---------ISTVTGAGIANGSVSVNEDP------ 688 (1086)
Q Consensus 628 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~p---------~~~~~~~~~~~~~~~~~~~~------ 688 (1086)
..+|.++..||.+.-+.+. ++..-..-+ -...++.--.|.. .......-...+...|.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~ 674 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH 674 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence 8899999999998876554 332111110 0111111111111 01111111111122221110
Q ss_pred -----CCCc-ccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCcc
Q 001396 689 -----KEDV-KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 762 (1086)
Q Consensus 689 -----s~d~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 762 (1086)
++.. .-++++ ..+.+++..++.-.....+.+ | -....+.+++.+....+.+.+.......=
T Consensus 675 ~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------- 741 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------- 741 (1096)
T ss_pred hcccccccCCceEEEe-cCCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh-------
Confidence 1111 112222 234455555442222222221 1 12344556666644444444332211100
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecC-CCEEEEEe-----------CCeEEEEEccCceEE
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTI 830 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~-----------dg~i~iwd~~~~~~~ 830 (1086)
..+.......++++|..+-..+...++...+....+.++.|..| +.++++|. .|.|.++....+..+
T Consensus 742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 01111222235566666655444434332222334445558777 78888774 267888888774444
Q ss_pred EEEcC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 831 LTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 831 ~~~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
..... -.+.+.++..- +|++||. -...|++|++.+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus 821 ~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 33322 22444444433 5777763 356899999999877777777889999999999999999998888777766
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcC
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 959 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 959 (1086)
....+-. .....+...+ .+++++.+-.+..++.+-.+|.+++....
T Consensus 897 y~~~eg~---f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 897 YKGDEGN---FEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EeccCCc---eEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEec
Confidence 5553311 1222222211 47899999999998888777777776554
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=2.2e-08 Score=109.00 Aligned_cols=223 Identities=15% Similarity=0.244 Sum_probs=152.9
Q ss_pred eeeccccceeeeeeeecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCc
Q 001396 371 VWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 449 (1086)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~ 449 (1086)
+|++...+......++.||...|+.+-|+|. -..||+++.|..+..||+.+... ....+..-...-..|+|+....
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p- 171 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP- 171 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc-
Confidence 4455444444445568999999999999995 46789999999999999988642 2223344445677899987766
Q ss_pred EEEEEEeCCCcEEEEeCCCC-ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-ecCCCCceE
Q 001396 450 ISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCT 527 (1086)
Q Consensus 450 l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~ 527 (1086)
.+...+..+.|.+||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+....... ......++.
T Consensus 172 -~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw 249 (1081)
T KOG0309|consen 172 -NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW 249 (1081)
T ss_pred -chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcce
Confidence 4555666778999999876 56788999999999998864332 3688999999999999876554332 223344666
Q ss_pred EEEEecCCCEEEEEeeCCCCceeEEEE---------eCCC-CeeeeEEecccccCCceEEEEEecC----------CCEE
Q 001396 528 RMAYSANGRRLFSCGTSKEGESFLVEW---------NESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQI 587 (1086)
Q Consensus 528 ~~~~s~d~~~l~~~~~~~~~~~~i~iw---------d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l 587 (1086)
.-.+.|-|+-.+.--..+ ...+.++ +..+ .+++..|.||. +.|....|-.. .-+|
T Consensus 250 ~~r~~Pfg~g~~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred eccccccCceeEeccccC--CeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeE
Confidence 666777555333221111 2234443 3222 35788899988 66655444322 2378
Q ss_pred EEEECCCcEEEEEcCC
Q 001396 588 LAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 588 ~~~s~dg~i~iwd~~~ 603 (1086)
++-+.|.++++|-+.+
T Consensus 325 VTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEeecCCceEeeeccH
Confidence 9999999999998764
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=2.1e-06 Score=87.77 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=129.7
Q ss_pred EEEeecCCCEEEEEe------CCeEEEEEcc-CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe----------------
Q 001396 801 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 857 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---------------- 857 (1086)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 578999999999884 3679999999 7888899988887778899999 887777652
Q ss_pred --CCCeEEEEEcCCceeEEE--e--ccccCCeEEEEEeCCCCEEEEEeCCCc-------EEEEECCCCceeeeeeeeccC
Q 001396 858 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 858 --~dg~v~iwd~~~~~~~~~--l--~~h~~~v~~l~~spdg~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++-.-..|. |-+++-... . ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c--eeccCCh
Confidence 122566677888988876 5 337788999999999987776544432 444443331 1 1111111
Q ss_pred C-CccCCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 925 G-VMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 925 ~-~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
. .....+.+-+|+++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ +++|.+.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 1 11222468899999999999885 45789999999999887633 3466677777676 6666554
No 293
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.85 E-value=0.00062 Score=78.48 Aligned_cols=579 Identities=11% Similarity=0.094 Sum_probs=288.1
Q ss_pred EECCCCCEEEEEeCCCEEEEEEec-CCCcccc---ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR- 471 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~- 471 (1086)
....+|...+.|..+|.+...-+. +++.... ....-+...-..|+..-++| ++..||.-|.=++-.+.+-.-
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 345678888888888877665554 4443322 11223455556777777777 578888766555555443221
Q ss_pred ------eEEeecCCcceEEEeecccC--CccEEEEEE---cCCeEEEEEcCCCce-eE--EecCCCCceEEEE-------
Q 001396 472 ------TYSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMA------- 530 (1086)
Q Consensus 472 ------~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s---~dg~i~vwd~~~~~~-~~--~~~~~~~~i~~~~------- 530 (1086)
+.++. .-+||..+++.... ....+++++ .||.+|+..-.-+-. .. .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 13332 34588888765443 344566654 578888873211100 00 0111 01111111
Q ss_pred ----------------------------EecCCCEEEEEeeCCCC-----ceeEEEEeCCCCeeeeEEecccccCCceEE
Q 001396 531 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 531 ----------------------------~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 577 (1086)
|+.+.+.+++....++. ...|++++-. .....+... ..++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence 22222223322221110 1123333322 111122221 23444
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC--C----CEEEEEECCCcEEEEECC-CCCe
Q 001396 578 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILETP-ESNS 650 (1086)
Q Consensus 578 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iw~~~-~~~~ 650 (1086)
...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-.. +...
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 4444555677777777777777777665 333333333346889989873 2 378888777665554332 2222
Q ss_pred eeeccccccce-eeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCccccc
Q 001396 651 VDAAGVLSDNL-RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 729 (1086)
Q Consensus 651 ~~~~~~~~~~v-~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 729 (1086)
+....-....+ +++-+. .+ ..|..+|.++..||.+.-+-++.........-.. .-...
T Consensus 572 ~~~~~l~~~~iPRSIl~~---------------~~----e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~--~lGt~ 630 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLT---------------TF----EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV--TLGTQ 630 (1096)
T ss_pred eeeeccCCCccchheeeE---------------Ee----eccceEEEEEcCCceEEEEEEEcccceEcccccc--ccCCC
Confidence 21111100000 011111 11 2347788888889988776655322111110000 00223
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeE-EEeecC-
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN- 807 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~-l~~s~d- 807 (1086)
++.--.|+..++.-+.+.+|.=..+|..+.. -++ ....++ .+.. ..|+.+
T Consensus 631 P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--------------Lv~--------spls~k------ev~~~c~f~s~a 682 (1096)
T KOG1897|consen 631 PISLRTFSSKSRTAVFALSDRPTVIYSSNGK--------------LVY--------SPLSLK------EVNHMCPFNSDA 682 (1096)
T ss_pred CcEEEEEeeCCceEEEEeCCCCEEEEecCCc--------------EEE--------eccchH------Hhhhhccccccc
Confidence 3444445544444333333333333321110 001 111111 1111 112222
Q ss_pred -CCEEEEEeCCeEEEEEccCceE--EEEEcCCCCCeEEEEEcCCCCCEEEEEeCC--------------CeEEEEEcCCc
Q 001396 808 -DAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARSS 870 (1086)
Q Consensus 808 -g~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~~ 870 (1086)
...++++..+.+++.-+..-+. ++++. -......+++.+ ....+++.+.- ..++++|-.|-
T Consensus 683 ~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf 760 (1096)
T KOG1897|consen 683 YPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF 760 (1096)
T ss_pred CCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCce
Confidence 3456777777777776654332 23322 223445666665 34444443321 14667776665
Q ss_pred eeEEEecc-cc---CCeEEEEEeCC-CCEEEEEeC----------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceE
Q 001396 871 EVISKLEG-HS---KRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 871 ~~~~~l~~-h~---~~v~~l~~spd-g~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
+.+...+- .. -.|.++.|..| +.+++.|.. .|.|.|+.+..... ...+....-. +.+
T Consensus 761 ~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~v~----Gav-- 832 (1096)
T KOG1897|consen 761 EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETVVK----GAV-- 832 (1096)
T ss_pred eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeeeec----cce--
Confidence 55433221 11 23445568877 677777642 46677777766211 1111111000 112
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc--eeeeeccc
Q 001396 936 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRILST 1013 (1086)
Q Consensus 936 ~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~--~~~~~~~~ 1013 (1086)
.+.--=...++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|..-+++.+-..+..+ ..-.-+
T Consensus 833 ~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-- 909 (1096)
T KOG1897|consen 833 YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-- 909 (1096)
T ss_pred eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--
Confidence 2222223345556777899999998866664 56788899999999999999999887877665554433 331111
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1014 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.+ .+-|..++.+- +.+.++.+..+|.+.+-......
T Consensus 910 D~-------~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 910 DY-------NPNWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred hh-------CccceeeEEEe--cCceEEeecccccEEEEEecCCC
Confidence 11 22344555555 46788889999999998876444
No 294
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.4e-06 Score=96.81 Aligned_cols=340 Identities=14% Similarity=0.113 Sum_probs=187.8
Q ss_pred EEEEEECCCCCEEEEEe----CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 393 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 393 V~~l~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
-+-..|+|...++|+++ ..|.|.||- ++|+..+. .+..- .+++++|+|..- +|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999999999885 357788884 45553221 12222 356799999866 788888899999999877
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC--C--CCc--eEEEEEecCCCEEE---
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P--GLG--CTRMAYSANGRRLF--- 539 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~--~~~--i~~~~~s~d~~~l~--- 539 (1086)
.+.-.....|..+|..+.|+ ++|..++++..-|.+.+|..+..+....... | +.. ..+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 77666667899999999995 5778999999999999998875444332211 1 112 23344456543221
Q ss_pred --EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 540 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 540 --~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+.+.+..+-....-|..++. .+... -.-.|+|..++.++.+|+|+-.|- .|+..........
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a--~rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLA--ERSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchh--hcccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 11111111001111211110 00000 012467888899999999988773 4555555543322
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECC-CCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
..+-|.+...-+++...+-++.++-.. .|..- .+..+.++-. .|. ..|. ++
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~e--------e~~~vk~sgk-----~Gg------------rqGg-iA 284 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSE--------ERCAVKVSGK-----LGG------------RQGG-IA 284 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCchH--------Hhhhhhhccc-----cCC------------ccCc-cc
Confidence 335555544445544444444443322 22110 0100111100 000 0111 22
Q ss_pred eccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCce
Q 001396 697 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 776 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 776 (1086)
.+.+.|.++- ..... ......+.+++++..+..+.++...|.+.+|.-....+ ....++..
T Consensus 285 ~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~ 345 (1416)
T KOG3617|consen 285 CSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDV 345 (1416)
T ss_pred cccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcce
Confidence 2222221111 00000 11345789999999999999999999999996433222 11224556
Q ss_pred ecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE
Q 001396 777 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 814 (1086)
Q Consensus 777 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 814 (1086)
|.+.+.. ...+.|+.+.|.|-...+++-
T Consensus 346 w~l~~~~----------e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 346 WTLNGKR----------ESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred EEecCch----------hhccceEEEEeccccchhhhh
Confidence 6655433 245678888888855544443
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=5.5e-06 Score=93.49 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=93.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCc--ceE-----EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 523 (1086)
.++.++.++.+.-+|.++|+.+........ ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788999999999998876543220 000 0000011123467888899999999999999888776544
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccC--CceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
....+... .++ .++.+.. ++.++.+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 32222222 244 4444432 6689999999999887765432000 00011111 1346777888999999999
Q ss_pred CCCeeEEEEc
Q 001396 602 NKVQLLTTID 611 (1086)
Q Consensus 602 ~~~~~~~~~~ 611 (1086)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=9.6e-06 Score=82.99 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=141.9
Q ss_pred eeEEEeec-CCCEEEEEe-CC-eEEEEEccCceEEEEEcCCCCCe--EEEEEcCCCCCEEEEEe-----CCCeEEEEEcC
Q 001396 799 VPCFALSK-NDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGM-----DDSTILIYNAR 868 (1086)
Q Consensus 799 v~~l~~s~-dg~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~-----~dg~v~iwd~~ 868 (1086)
...++.+| ++..++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34678889 555666665 34 58999999999998877655443 3578999 888888753 34799999999
Q ss_pred -CceeEEEeccccCCeEEEEEeCCCCEEEEEeC-------CC-----------cEEEEECCCCceeeeeeeeccCCCccC
Q 001396 869 -SSEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DA-----------QIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 869 -~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-------dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
+.+.+.++..|.-.-..+.+.|||+.|+.+-. .| .+..-|..+++......+......
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~--- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ--- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc---
Confidence 67888999888777788999999988887521 12 244555666654443222211122
Q ss_pred CCCceEEEEecCCCEEEEEe------CC--eEEEEEcCCccceeccc------cCCccCEEEEEEeCCCCEEE-EEECCC
Q 001396 930 APSETHIQFHKDQTRFLLVH------ET--HLAIYEAEELTCLKQWF------PISSVPISQATFSCDCRMVF-TSFVDG 994 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~~------d~--~i~vwd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~-s~~~Dg 994 (1086)
-.|..+++.++|..++... +. -+.+++.... +..+. ..-...+-+|+++.+|.+++ |+-.-+
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 2599999999999877631 11 2445544332 21111 11267899999999998775 555678
Q ss_pred cEEEEEcCCCceeeeec
Q 001396 995 TLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 995 ~v~vWd~~~~~~~~~~~ 1011 (1086)
++.+||..+++++....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 99999999999996655
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=6.3e-08 Score=99.01 Aligned_cols=159 Identities=9% Similarity=0.096 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEeccccCCeEEEEEeCCCCEEE---EEeCCCcEEEEECCCCc
Q 001396 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 841 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~---s~s~dg~i~iwd~~~~~ 913 (1086)
..+..++ ++++||++..+....++++.... ++..... ...-+++.|..+..... .+++...+.+|....+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 88999999888887777776433 2222221 12233444444444433 34555666677666422
Q ss_pred eeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 914 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
....-||.. .++.+++|||+++++++ .|..|+|-.+..--.+..+..||..-|..++.-++ ..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 233456665 79999999999999996 78899999999888888889999999999998764 56999999
Q ss_pred CCcEEEEEcCCCceeeeec
Q 001396 993 DGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 993 Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
|++|++||+.+|+.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999987665
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=7.2e-07 Score=85.91 Aligned_cols=148 Identities=11% Similarity=-0.040 Sum_probs=108.1
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
+.++++|+|++++++.+....|..|.+...............++.=.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999976543332223344455567889998887 7999999999999999865443
Q ss_pred E-----EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC--------ceEEEEEecCCCEEE
Q 001396 473 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF 539 (1086)
Q Consensus 473 ~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~d~~~l~ 539 (1086)
. +-..|.+.+..+.|++.+--.+|+..-.-+.+.+.|+++......+..... .+....|+.++.-+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 224589999999998755556777777788999999998876554333222 255566666665555
Q ss_pred EEe
Q 001396 540 SCG 542 (1086)
Q Consensus 540 ~~~ 542 (1086)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=7.6e-06 Score=80.82 Aligned_cols=255 Identities=11% Similarity=0.075 Sum_probs=138.8
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
++.+.||+.||... +..|.+-..+.. ..+.+.+........-+.++|+||+..|+.+...|+|++||+....+
T Consensus 3 ~~~~~~Gk~lAi~q-----d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-----DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred eeecCCCcEEEEEe-----ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence 56778999999876 556666554432 23344444443345678899999999999999999999999976443
Q ss_pred EEEEcCCC-C----CCCCceEEEecCC------CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceec
Q 001396 607 LTTIDAGG-G----LPENPRICFNKNG------TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 675 (1086)
Q Consensus 607 ~~~~~~~~-~----~~~v~~v~~s~~~------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 675 (1086)
..+.... . ...|..+.|-+.. ..|++....|.++-|-+..+
T Consensus 78 -f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g--------------------------- 129 (282)
T PF15492_consen 78 -FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG--------------------------- 129 (282)
T ss_pred -EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc---------------------------
Confidence 3433211 0 1123333343311 12333333344333332111
Q ss_pred cccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEe
Q 001396 676 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 755 (1086)
Q Consensus 676 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw 755 (1086)
...+....+.+. +. ......|.++.+.|..+.|++++....-.
T Consensus 130 -----------------------t~q~y~e~hsfs-----------f~-~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~-- 172 (282)
T PF15492_consen 130 -----------------------TNQGYQENHSFS-----------FS-SHYPHGINSAVYHPKHRLLLVGGCEQNQD-- 172 (282)
T ss_pred -----------------------cCCcceeeEEEE-----------ec-ccCCCceeEEEEcCCCCEEEEeccCCCCC--
Confidence 000111111110 00 11355789999999988888877652100
Q ss_pred eccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC
Q 001396 756 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 835 (1086)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~ 835 (1086)
.........+..|.+.++...... ..+.+...-.. ..+..+|.+.+.+.......
T Consensus 173 ---------~~s~a~~~GLtaWRiL~~~Pyyk~--------------v~~~~~~~~~~--~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 173 ---------GMSKASSCGLTAWRILSDSPYYKQ--------------VTSSEDDITAS--SKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred ---------ccccccccCceEEEEcCCCCcEEE--------------ccccCcccccc--ccccceeeccceeeeecccc
Confidence 001111224555665554422221 00111111000 01123444444433333344
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccc
Q 001396 836 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 879 (1086)
Q Consensus 836 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 879 (1086)
..+.|..|..|| ||++||+...+|.|.+|++.+-++...+.-+
T Consensus 228 ~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 228 EQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 667899999999 9999999999999999999988776665533
No 300
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=98.72 E-value=4.8e-08 Score=93.60 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHhhhccCchhhhhh---------------ccccHHHHHHHHhCCCHHHHHHhhccCc--cccccccccee
Q 001396 4 LNKDLVFLILQFLNEEGFTESAHI---------------FYFDMKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTKI 66 (1086)
Q Consensus 4 ~~~evvrli~q~L~~~G~~~s~~~---------------~~~~~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~ 66 (1086)
.++|+-|||+.||-..||..+|.. .-.+...+|.+|..|+-++|+..+..+- .++.+. . +
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~--~-l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR--E-L 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch--h-H
Confidence 467899999999999999999988 1224556899999999999999998872 333332 2 8
Q ss_pred hhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc---cccccccccccccCCChHHHHHHHHHHH
Q 001396 67 YFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL---DDIRDHELLSKYYGDALSARKNMMLELK 143 (1086)
Q Consensus 67 ~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~---~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 143 (1086)
.|.+.+|+++||+..+...+|++|++++|.|+...++..++.|...|.. +..++.+. .|.- ....|.++...+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~--~~l~-~~s~R~kvA~~vN 178 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPS--AELL-SQSLRQKVASEVN 178 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcH--HHHH-HHHHHHHHHHHHH
Confidence 8999999999999999999999999999999987777777766665553 32221111 0000 1244777777776
Q ss_pred hhcccCccccccccCCCCCchHHHHHHHHhHHhh
Q 001396 144 QIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 177 (1086)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 177 (1086)
..|-...- .+ -..+|..|+..-+..|
T Consensus 179 ~aiL~~~~------~~--~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 179 SAILASQE------HE--SEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHHhc------cc--ccchHHHHHHHHHHHH
Confidence 66544211 10 1447888885444444
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=1e-07 Score=103.92 Aligned_cols=294 Identities=13% Similarity=0.143 Sum_probs=188.2
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccc--cEeEEEecCCCCcE-EEEEEeCCCcEEEEeC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQI-SVITCGDDKTIKVWDA 466 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~s~d~~~l-~l~s~~~d~~i~iwd~ 466 (1086)
.+++.++.++|.|+-+|.++.-| +.+-|+...-. .. .+-.|.. .|-.+.|+|..... .+|+.+ .....+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--PP-RWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC--Cc-eeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence 46788999999999999999888 66777764321 11 1112322 46778888876533 455544 555678997
Q ss_pred CCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecC-CCEEEEE
Q 001396 467 VTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFSC 541 (1086)
Q Consensus 467 ~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d-~~~l~~~ 541 (1086)
... ..-..+.+|...|+.+-|++. ....+++++.|-.+..||+++..... .+..-......++|+.. +..+++.
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCC-CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 643 334567889999999999865 34589999999999999999866543 44444445667888774 4455544
Q ss_pred eeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 542 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
. ...|.+||.+.| .++..+++|. ..|+.+.|..- ...+.+.+.||+|+.||.............. ...+
T Consensus 178 h-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~pi 248 (1081)
T KOG0309|consen 178 H-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPI 248 (1081)
T ss_pred c-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcc
Confidence 3 345999999865 5667777766 78888888753 3467889999999999987543222111111 1234
Q ss_pred ceEEEecCCCEEEE-----------EECCCcEEEEECCC-CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCC
Q 001396 620 PRICFNKNGTLLAV-----------IANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 687 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~-----------~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 687 (1086)
..-.+-|-|.-.++ --.+.....|+..+ .+++..+.||.+.|....|-...... ++
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d 316 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD 316 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence 44445553321111 11122223344433 36788889999888665554322211 11
Q ss_pred CCCCcccceeccccCccceeeee
Q 001396 688 PKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 688 ~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
.....-.|++-+.|.++|+|.+.
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCccceeEEEeecCCceEeeecc
Confidence 11223468999999999999865
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=2.6e-07 Score=90.57 Aligned_cols=259 Identities=14% Similarity=0.200 Sum_probs=163.2
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCce-----EEEEEcCCCC------------CeEEEEEcCCCC-CEEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHDN-NVIAI 855 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~d~-~~las 855 (1086)
....|+++.|...|.|+++|. +|.|.+|.-+... ....+++|.. .|..+.|..+.+ ..+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 566799999999999999998 6889998765322 2233555542 356777765333 34555
Q ss_pred EeCCCeEEEEEcCCcee-------------------------------------EE-----Ee-ccccCCeEEEEEeCCC
Q 001396 856 GMDDSTILIYNARSSEV-------------------------------------IS-----KL-EGHSKRVTGLVFSDAL 892 (1086)
Q Consensus 856 g~~dg~v~iwd~~~~~~-------------------------------------~~-----~l-~~h~~~v~~l~~spdg 892 (1086)
.+.|.+|++|.+..... +. .. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67799999998753210 10 01 3477778899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc--cCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccc-----
Q 001396 893 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC----- 963 (1086)
Q Consensus 893 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~----- 963 (1086)
..++++ .|-.|.+|+++-.... ..+-....+. ....-|++..|+|....++. ++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~s--FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGS--FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCCc--eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 998876 4667999998753211 1111111111 11145788999998766554 6889999999873211
Q ss_pred -eec---------cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC-ceeeeeccccc----cCCCCccCcccc-
Q 001396 964 -LKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAY----LRPTTSCLHVYP- 1027 (1086)
Q Consensus 964 -~~~---------~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~~~----~~~~~~~~~~~~- 1027 (1086)
+.. ++.+-...|..+.||++|+|+++-.. -+|++||+.-. .++.++..+.. +...+-++.++.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 100 11122567889999999999998754 58999998754 44544432111 111112333433
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1028 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1028 ~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
..+.|+. |...+++|+..+...++-...++
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EEEEecC-CcccccccccccceeeeccccCC
Confidence 5677887 45778888877776666543333
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=2.7e-07 Score=90.43 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=87.1
Q ss_pred CCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCce---EEEEEcCCC-----CCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 794 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
.|...+.++.|..|.+.++++.+=.|-+|++.-.. .+..++.|. .-|++..|+|....++...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999886322 233445554 3478999999777888889999999999
Q ss_pred EcCCcee------E----------EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001396 866 NARSSEV------I----------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 866 d~~~~~~------~----------~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 912 (1086)
|++...+ + .-+.+-...|..+.|+++|+++++-+. -+|+|||+...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 9984221 0 111222346777889999888887543 46889988763
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=3.6e-05 Score=80.58 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=138.7
Q ss_pred EEEEec-CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee-cCCCE
Q 001396 733 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 810 (1086)
Q Consensus 733 ~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s-~dg~~ 810 (1086)
+++|.+ ++..+++-...+.|..|+.... . ...... . ....+++. +++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~-----~-~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL-----P-GPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES-----S-SEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec-----C-CCceEEEEccCCEE
Confidence 467777 5555555555677776654332 2 111111 1 26677887 66555
Q ss_pred EEEEeCCeEEEEEccCceEEEEEcC-----CCCCeEEEEEcCCCCCEEEEEeCC--------CeEEEEEcCCceeEEEec
Q 001396 811 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 877 (1086)
Q Consensus 811 l~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~l~ 877 (1086)
+.+..+.+.++|..+++....... .....+.+++.+ +|++.++.... |.|..++.. ++......
T Consensus 55 -~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 55 -YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp -EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred -EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 445556666669988865443332 335678999999 88888776544 557777777 55433333
Q ss_pred cccCCeEEEEEeCCCCEEE-EEeCCCcEEEEECCCCc--eeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeE
Q 001396 878 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 953 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~-s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i 953 (1086)
.-.....|+|+||++.|. +-+..+.|..++++... ......+....... +....+++..+|++.++ ...+.|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 345578999999998765 55677889999886432 22223332222221 13668999999998887 467899
Q ss_pred EEEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEE
Q 001396 954 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTS 990 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~ 990 (1086)
.+++.. |+.+..+..+ ...+++++|. +|.+.|+..
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 999987 8877765554 4589999995 566665544
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=3.8e-07 Score=87.50 Aligned_cols=209 Identities=14% Similarity=0.202 Sum_probs=129.5
Q ss_pred ceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC
Q 001396 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 410 (1086)
|+.+.|+-+ +.|+++..++.+......++.+.. .|+-.....++.. +..|.++-.+-+.+--+..++++..
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 666777765 458888888888887776665543 2332222222222 3345554444455556788999999
Q ss_pred CCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 411 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
||.+.+.+.+.- ++...... .|.+ --+.+....+. .+.+++ .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 22111111 1222 11222333344 333332 1234556665543322211222334888
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
++-+|.+. +.+++|+.||.+-+||.+...... .+..|..++..+.|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88887644 688999999999999999875544 5677888999999999 6778888886 66799999654
No 306
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.66 E-value=2e-05 Score=81.61 Aligned_cols=207 Identities=15% Similarity=0.198 Sum_probs=134.9
Q ss_pred eeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeEE
Q 001396 799 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 874 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 874 (1086)
...+++|.||+++.+.. ...|.|.|+...+.+..+.... ... .+ |.+++-+.+-+.||++.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~--iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWL--IY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEE--EE-EEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEE--EE-ecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 34578999999999987 4679999999999998886432 221 22 2134567788889999999887 455432
Q ss_pred E----eccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc---cC-CCCceEEEEecCCCEE
Q 001396 875 K----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---TL-APSETHIQFHKDQTRF 945 (1086)
Q Consensus 875 ~----l~~h~~~v-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~-~~~v~~~~~s~dg~~l 945 (1086)
+ |..-.+++ ..-+++.++..++..+..|.|+--|+.................. .. .+.-..+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 22222222 23455556666666889999999999887655444444322110 00 0455679999877766
Q ss_pred EE-E---eCC-------eEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEE-ECCCcEEEEEcCCCceeeeec
Q 001396 946 LL-V---HET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 946 ~~-~---~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~-~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
.+ . .++ .|-++|+++++.+..+.. ..++.++..|.|.+ +|++. ..++.+.+||..+|+.+.++.
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 65 2 222 488889999999987654 34577999999886 55444 457899999999999998887
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=3.8e-05 Score=80.39 Aligned_cols=220 Identities=17% Similarity=0.143 Sum_probs=143.8
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC-CCCCEEEEEeCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYSK 411 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~d 411 (1086)
+..|.+....|+++....+.|..|+..+++.... ... ....+++. ++|+++ .+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~-v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLY-VADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEE-EEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEE-EEEcC
Confidence 5788983335788887889999999988865421 111 16677777 665554 45455
Q ss_pred CEEEEEEecCCCccccceEec--c-ccccEeEEEecCCCCcEEEEEEeCC--------CcEEEEeCCCCceeEEeecCCc
Q 001396 412 HIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~v~~s~d~~~l~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
+ +.++|..+++.. ...... . .....+++++.++|+ +.++.... +.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 5 566698887543 222331 2 345789999999999 66665533 557777766 5543333 3345
Q ss_pred ceEEEeecccCCccEE-EEEEcCCeEEEEEcCCCce----eE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 481 PVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~----~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
..+.++|++ +++.| ++-+..+.|..++++.... .. .+....+....+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 568889865 56555 5667888999999864433 11 12222235788999999988777553 56799
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 591 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 591 (1086)
++|.+ |+.+..+.... ..+++++|. ++.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 99987 88888888765 588999994 6767776654
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.64 E-value=8.2e-06 Score=85.33 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=138.3
Q ss_pred CCeEEEEEccCceEEEEEcCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCC
Q 001396 816 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 816 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 893 (1086)
+|.|..||..+|+.+....-. .....+..+. ++..+++++.++.++.||..+|+.+..+.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999999887542 1222322332 344677778999999999999999877764 22222212 22455
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCc
Q 001396 894 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 972 (1086)
Q Consensus 894 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~ 972 (1086)
.++.++.++.|..+|..+++..-........... .........++..++++ .++.|..+|.++|+.+-.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6666778889999999888754421111111110 12233344447777775 589999999999998766433221
Q ss_pred c---------CEEEEEEeCCCCEEEEEECCCc-EEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001396 973 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1042 (1086)
Q Consensus 973 ~---------~v~~l~fs~dg~~l~s~~~Dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1042 (1086)
. .+..-....++ .++.++.++. +.+ |+.+++.+.+.. ... .. . ...+ ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 12222333345 7777777885 555 999999663221 111 11 1 1223 4678888
Q ss_pred EeCCCcEEEEccCCCCCCCC
Q 001396 1043 GLTNGEVYVIEPNEPGDTWA 1062 (1086)
Q Consensus 1043 ~~~dg~v~vw~~~~~~~~~~ 1062 (1086)
++.+|.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999988776663
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=2.1e-05 Score=82.27 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=141.2
Q ss_pred CCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
+|+|..||..+|+.+-.. .+.. ... ..+. ..++++ .+++++.++.+..||..+|+.+.++.. ...+...-
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~-~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~--- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGG-PVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP--- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSS-EEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCC-ccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---
Confidence 678899999888765533 1211 122 1111 233455 567778899999999999999888764 22222111
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEe-cCCC---CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
..++..++.++.++.+..+|..+++..... .... ..........++..++++.. .+.|+.+|.++|+.+..+
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 113346777778899999999999988873 3221 11223333344777777764 567999999999998888
Q ss_pred ecccccC-Cc------eEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 566 QGLQLQH-NS------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 566 ~~~~~~~-~~------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
....... .. +..-....++ .++.++.++.+..+|..+++.+.... ... +.. ....++..+++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~---~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG---IYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC---ccC-CceeeCCEEEEEeCCC
Confidence 7633110 11 1122222334 78888888864444999999765433 111 122 2456788888888999
Q ss_pred cEEEEECCCCCeee
Q 001396 639 RIKILETPESNSVD 652 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~ 652 (1086)
.+..||+.+++...
T Consensus 223 ~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 223 RLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEe
Confidence 99999999987654
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=93.87 Aligned_cols=177 Identities=16% Similarity=0.111 Sum_probs=131.4
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
+.++||-+-.-.-++.+.+-.|-+-|+++|.... + ...+.|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 4447775432223444556789999999986542 2 256889999999999999999999
Q ss_pred CEEEEEEecCCCcc--ccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCce---eEEeecCCcceEEE
Q 001396 412 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 485 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~ 485 (1086)
|.|...|++.+..- .+. .---|...|+++..-. +++ +|++.+.+|.|++||.+--++ +..+.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999875221 111 1225888999998877 555 788889999999999987666 88999998776666
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC----ceEEEEEe
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYS 532 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s 532 (1086)
-++..+....+++++.|...|+|.++.+....+...... .+.+++|.
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 666677777999999999999999998887776654432 34445543
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=0.0003 Score=68.15 Aligned_cols=136 Identities=13% Similarity=-0.039 Sum_probs=91.0
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCC
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 573 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 573 (1086)
.+++.|+..+.+.--|..++......... .++.+-+.- -|++++.|.. .+.++..+..+|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 46777888888888887777766544332 233333332 4667877776 5569999999998888877654 2
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcE
Q 001396 574 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 640 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 640 (1086)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..|-...|+.+...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence 2233456788999999999999999999999999887766553 2334445522334444444433
No 312
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.59 E-value=7.5e-06 Score=79.14 Aligned_cols=226 Identities=11% Similarity=0.000 Sum_probs=149.2
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
.-.+||.|+..|...+|...+.+..-. ....|...|+-+.=.-|.+. -+..++.|.++++.+++-+.....+ |..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~--h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV--HNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee--ecc
Confidence 345899999999999999997654322 22344444433322223332 4666788999999998765443322 333
Q ss_pred c--eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 481 P--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 481 ~--v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
. +.++++ ++|+.++++.+....|..|.++...... ........-.+..|+.....+|++.. ++.+.|||
T Consensus 158 ~~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~D 231 (344)
T KOG4532|consen 158 NLTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYD 231 (344)
T ss_pred ccceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEE
Confidence 3 666666 5677899999999999999988766533 22333345567889999999999987 77899999
Q ss_pred CCCCeeeeEEe--cccccCCceEEEEEecCCC--EEEEEECCCcEEEEEcCCCeeEEEEcCCCC------CCCCceEEEe
Q 001396 556 ESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKD--QILAAGDDHVIKIWDMNKVQLLTTIDAGGG------LPENPRICFN 625 (1086)
Q Consensus 556 ~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~--~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~v~~s 625 (1086)
++......... ....|++.++.+.|++.|. .|+..-.-+.+.+-|++++...+.+..... ...+....|+
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 98654332221 1122568999999998653 455555667899999999877665543221 1235566666
Q ss_pred cCCCEEEEEECC
Q 001396 626 KNGTLLAVIANE 637 (1086)
Q Consensus 626 ~~~~~l~~~~~d 637 (1086)
.++..+.+.+.+
T Consensus 312 ~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 312 NENESNDVKNEL 323 (344)
T ss_pred CCCcccccccch
Confidence 666655555443
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.9e-06 Score=89.18 Aligned_cols=297 Identities=14% Similarity=0.146 Sum_probs=191.7
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
|...|+.+..+ -.+.+++++-||.++.|.-.. ..|..+... ...|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKh---FraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKH---FRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhh---hHHHHHHHHhhhccc
Confidence 56666665444 566789999999999985221 011111111 113777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceEEEEEcC--CCCCeEEEEEcCCCC-CEEE-EEeCCCeEEEEEcCCce-eE-EEecc
Q 001396 807 NDAYLFSAS--GGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDN-NVIA-IGMDDSTILIYNARSSE-VI-SKLEG 878 (1086)
Q Consensus 807 dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~d~-~~la-sg~~dg~v~iwd~~~~~-~~-~~l~~ 878 (1086)
||.++.+.. |..++++|+++...+.-++- .++. -+...++.|. ..|| +.-.+|.+.++|-.... .. ..-.-
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 999999976 57899999987766533322 2222 2233344111 1333 33457899999976543 23 33344
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeee--e---e---eccCCCccCCCCceEEEEecCCCEEEE-Ee
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR--S---L---QTPDGVMTLAPSETHIQFHKDQTRFLL-VH 949 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~--~---~---~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 949 (1086)
|..+|.++.+++-+..++|....|.|.-|.... ..+..+ . + ..+-+.........++.|+|+|..+++ +.
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 999999999999999999999999999999874 111000 0 0 001111111145789999999999998 78
Q ss_pred CCeEEEEEcCCccceeccccC-------------------------------C-ccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 950 ETHLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 950 d~~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
|..|++++.++|+.++.+-.. | ...-+.++|...|.+|+-++-=| |+
T Consensus 222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik 300 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK 300 (558)
T ss_pred ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence 899999999999877652210 2 33446678889999999887765 99
Q ss_pred EEEcCCCceeeeecccccc---------CCCCccC-------cccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001396 998 IHEASNLEVQCRILSTAYL---------RPTTSCL-------HVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 998 vWd~~~~~~~~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~p~~~~~l~~~~~dg~v~vw 1052 (1086)
|.++.++.+.+.+...... ....... ...+ .+.+.+ |+.+++++-.-+.++++
T Consensus 301 vin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 301 VINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 9999999887554411110 0000000 0111 133666 78899999999999998
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=7.4e-08 Score=107.02 Aligned_cols=195 Identities=17% Similarity=0.212 Sum_probs=144.3
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC--cE
Q 001396 827 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--QI 904 (1086)
Q Consensus 827 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg--~i 904 (1086)
.+..++|..|....+|++|+- +.++|++|+..|.|++|++.+|.......+|..+|+.+.-|-||..+++.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999999 899999999999999999999999999999999999999999998887765433 46
Q ss_pred EEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCC---ccCEEEEEE
Q 001396 905 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS---SVPISQATF 980 (1086)
Q Consensus 905 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~f 980 (1086)
.+|++.+.- .....+. .-.++.||.....-+.| ......+||+.++..+.+++.+. +..-....|
T Consensus 1170 aLW~~~s~~----~~~Hsf~-------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSFD-------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhcccccc----Ccccccc-------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 799988611 1122222 35678898886555554 44678999999999888766543 333467789
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 981 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 981 s~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
||+..+++ .||. +||++..+.+.+|........ =.|+| .|+.++.-+ -|||+.
T Consensus 1239 sP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~-----------G~FHP-~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGG-----------GGFHP-SGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred CCCcceEe---eCce--eeeeccHHHHhhhhhheeccc-----------ccccC-CCceEEeec-----hhhhhH
Confidence 99999888 6773 699999988877763221111 13777 566666544 466653
No 315
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.56 E-value=5.3e-05 Score=78.55 Aligned_cols=285 Identities=12% Similarity=0.134 Sum_probs=153.5
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----------CCCcEEEEEcCCCeeEEEEcCCCC---
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 615 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 615 (1086)
++++++|.++++.+..+.. +-...+..+|+++.+++++ ..-.|.+||..+-.+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4699999999998877776 3345577899999998754 334699999999988887655432
Q ss_pred --CCCCceEEEecCCCEEEEEEC--CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCC
Q 001396 616 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 691 (1086)
Q Consensus 616 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d 691 (1086)
.......+++.||+++++.-. ..+|.|.|+...+.+..+.... |.-+-|.+
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--------------------- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--------------------- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence 123456788889988877533 4568888888776655443211 11111110
Q ss_pred cccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccc
Q 001396 692 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 771 (1086)
Q Consensus 692 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 771 (1086)
.+.+.+-..||++....++............-......-+..-+++..+..++-.+-+|.|+--++.......
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~------- 219 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF------- 219 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-------
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-------
Confidence 0113333334444443333111110000000000011112233444555555556677777766655443211
Q ss_pred cCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-e--------CC--eEEEEEccCceEEEEEcCCCCCe
Q 001396 772 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S--------GG--VISLYIVMTFKTILTIMPPSPTA 840 (1086)
Q Consensus 772 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~--------dg--~i~iwd~~~~~~~~~~~~~~~~i 840 (1086)
..-|.+.+.... .... ..+.-.-+++++....|.+. . ++ .|.++|+.+++.+.++.- ..++
T Consensus 220 --~~~~~~~t~~e~-~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 220 --GKPWSLLTDAEK-ADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp --EEEEESS-HHHH-HTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred --cCcccccCcccc-ccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 112222110000 0000 11222346777655444443 1 21 388889999999998873 3467
Q ss_pred EEEEEcCCCCCEEEEEe-CCCeEEEEEcCCceeEEEecc
Q 001396 841 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 841 ~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
.+++++.++..+|.+.+ .++.+.+||..+|+.+.++.+
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 79999996665776554 578999999999999988874
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.56 E-value=2.3e-05 Score=87.80 Aligned_cols=184 Identities=12% Similarity=0.073 Sum_probs=118.9
Q ss_pred EEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEE
Q 001396 802 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISK 875 (1086)
Q Consensus 802 l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~ 875 (1086)
+=++|||+.+...+ .+.+.+.|.++.+...++.-.. ....+++++ +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34567887765554 4778899999888877766433 456789999 888888776322 222222222111111
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC----CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--e
Q 001396 876 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 949 (1086)
Q Consensus 876 l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 949 (1086)
+.-. .+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 1100 00 133457887665 367799999887 22 1222333332 35679999999999984 5
Q ss_pred CCeEEEEEcCCccc------------eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 950 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 950 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
++++.|.|+.+.+. +.+... .......+|.++|....|-.-|..|..|++..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999987553 222222 33445678999999888999999999999987
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=0.00013 Score=70.53 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=95.6
Q ss_pred ecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEE
Q 001396 336 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 415 (1086)
Q Consensus 336 ~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 415 (1086)
.-+|.+.+++.||..+.+.--|..+|+...+..+ +..|.+-+.- -|.+++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il--------------------g~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL--------------------GVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh--------------------CceeeeeeEE-ECCEEEEEEccCcEE
Confidence 3455667899999999999999999987754211 1233332222 477899999999999
Q ss_pred EEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccE
Q 001396 416 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 495 (1086)
Q Consensus 416 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 495 (1086)
+.+.++|+.......+..- . ......+++. ++..|+.|++.+..|..+..++...+...+...+-++.+- + ..
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999999765533222111 1 1234566778 8999999999999999999999887654443333344322 2 24
Q ss_pred EEEEEcCCeEEEE
Q 001396 496 IFSISVDGKIKAW 508 (1086)
Q Consensus 496 l~s~s~dg~i~vw 508 (1086)
|+.+...|.+.--
T Consensus 150 ly~a~t~G~vlav 162 (354)
T KOG4649|consen 150 LYAAITAGAVLAV 162 (354)
T ss_pred EEEEeccceEEEE
Confidence 5555555554433
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.54 E-value=0.00012 Score=86.09 Aligned_cols=243 Identities=14% Similarity=0.166 Sum_probs=143.5
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeee
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
..|.++.|..+.+.++.+...|.|.+-|..+......-.... .|.+++|+||+..++..+.++++.+.... -.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~---GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN---GISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC---ceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 589999999999999999999999999888766544333333 48999999999999999998888775432 11110
Q ss_pred eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceE
Q 001396 653 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 732 (1086)
Q Consensus 653 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~ 732 (1086)
.-.-+. ...+.+....+|++...-.|.|. ..+
T Consensus 145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrgs------------------------------------------~gr 176 (1265)
T KOG1920|consen 145 EKPLDA------DDERKSKFVNVGWGRKETQFRGS------------------------------------------EGR 176 (1265)
T ss_pred cccccc------ccccccccceecccccceeeecc------------------------------------------hhh
Confidence 000000 00000011111111111111000 000
Q ss_pred EEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEE
Q 001396 733 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 812 (1086)
Q Consensus 733 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 812 (1086)
..+.-+ ...... +.+....+.-+.+.|--||+++|
T Consensus 177 ~~~~~~-----------------------------------------~~~ek~----~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 177 QAARQK-----------------------------------------IEKEKA----LEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred hccccc-----------------------------------------cccccc----ccchhhccCCceEEEccCCcEEE
Confidence 000000 000000 00000122334688999999999
Q ss_pred EEe-----C-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---ceeEEEecccc
Q 001396 813 SAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHS 880 (1086)
Q Consensus 813 ~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h~ 880 (1086)
+.. + .+|+|||-+ |..-..-....+.-.+++|-| .|.++|+-. +|+.|.++.-.. |+..-.+....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 853 4 679999987 444333333334557899999 888888753 455799987653 22333334444
Q ss_pred CCeEEEEEeCCCCEEEE---EeCCCcEEEEECCCCce
Q 001396 881 KRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 881 ~~v~~l~~spdg~~l~s---~s~dg~i~iwd~~~~~~ 914 (1086)
.+|..++|+.++..||+ ......|++|-+.+..-
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 55999999999999998 55555699999988553
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.52 E-value=0.00015 Score=80.18 Aligned_cols=259 Identities=17% Similarity=0.214 Sum_probs=135.7
Q ss_pred cCCCceEEEEE--------eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 337 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 337 spdg~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
|||++++|+.- +..+.+.|||+++++.... ......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 78999765532 2236789999998765532 1224678899999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEecc-------c---------cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
. ++.|.+++..+++..+. +..| - -+.-..+.|||||+++.++. -.+..|..+.+..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~-~d~~~v~~~~~~~---- 132 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR-FDEREVPEYPLPD---- 132 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE-EE-TTS-EEEEEE----
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE-ECCcCCceEEeec----
Confidence 5 56799999887743321 2222 0 12236788999999633332 2344444443210
Q ss_pred EEeecCCc---ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-Ee----cCCCCceEEEEEecCCCEEEEEeeC
Q 001396 473 YSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DY----DAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 473 ~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~----~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
...... .+..+.+ |.+...- ..-.+.++|+.+++... .. .....-+..+.|.++++.++..-.+
T Consensus 133 --~~~~~~~yp~~~~~~Y-Pk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 133 --YSPPDSQYPEVESIRY-PKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp --ESSSTESS-EEEEEE---BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred --cCCccccCCccccccc-CCCCCcC-----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 001111 1222222 1111100 01135667887766532 21 2344568899999999955444333
Q ss_pred C-CCceeEEEEeCCCCeeeeEEecccccCCce---EEEEEe-cCCCEEEE-EECCCc--EEEEEcCCCeeEEEEcCCCCC
Q 001396 545 K-EGESFLVEWNESEGAIKRTYQGLQLQHNSV---SVVHFD-TAKDQILA-AGDDHV--IKIWDMNKVQLLTTIDAGGGL 616 (1086)
Q Consensus 545 ~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~-~s~dg~--i~iwd~~~~~~~~~~~~~~~~ 616 (1086)
+ .....+.+.|..++.......... ...| ....|. +++..++. ...+|. |++++...+... .+... .
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~--~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~ 279 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETS--DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--D 279 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEES--SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--S
T ss_pred cCCCEEEEEEEECCCCceeEEEEecC--CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--c
Confidence 3 335667888988876654443322 2222 244554 66655544 446665 455566555533 33221 2
Q ss_pred CCCc-eEEEecCCCEEEEEEC
Q 001396 617 PENP-RICFNKNGTLLAVIAN 636 (1086)
Q Consensus 617 ~~v~-~v~~s~~~~~l~~~~~ 636 (1086)
-.|. -+.++++++.++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEES
T ss_pred eeecccceEcCCCCEEEEEec
Confidence 2343 3667777666554433
No 320
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.52 E-value=2.8e-07 Score=87.02 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=99.9
Q ss_pred cHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001396 31 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 110 (1086)
Q Consensus 31 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~ 110 (1086)
+...++++|++||++.|+..+.....--..... .+.|.|++|+|+|+|..++..+|+.+.|++|.|......+.++++.
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 567899999999999999998876211111122 2889999999999999999999999999999776543567788999
Q ss_pred HHhccccccc--ccccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhh
Q 001396 111 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 177 (1086)
Q Consensus 111 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 177 (1086)
.+|...+..+ ...+..... ...|+.+.+.+...+-.. ..+| +.+.|..++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~------~~~~--~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKS------YGLP--KESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHH------hCcC--CCCHHHHHHHHHHHHh
Confidence 9998877654 223333223 367899999888876662 2222 3567888888766544
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.2e-05 Score=82.37 Aligned_cols=251 Identities=13% Similarity=0.163 Sum_probs=149.0
Q ss_pred eecCCCccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
++.+|...|..++|||..+ ++..++.+..|+|.|+++..++. .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5888999999999999877 78889999999999999976554 45556 78999999999877 8899999999999
Q ss_pred EeCCCCce-eEEeec--CCcceEEEeeccc----CCccEEEEEEcCCeEEEEEcCCCce--eEEec-CCCCceEEEEEec
Q 001396 464 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA 533 (1086)
Q Consensus 464 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~ 533 (1086)
||++..+- +..+.+ ...+|..++..+. ..+.+|+..+.+ +..|.+..... ..... ...+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 233322 2334444432211 122344443333 34455433222 22222 2244566777777
Q ss_pred CCCEEEEEeeCCCCceeE----EEEeCCCCeeeeEEe----cccc-cCCceEEEEEecCCCEEEE-EECCCcEEEEEcCC
Q 001396 534 NGRRLFSCGTSKEGESFL----VEWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 603 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i----~iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 603 (1086)
-.+.++........--++ .-.|..+|..+..-+ +... ....-..+.-.+++++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 667666655432111111 112223333322211 1000 0011112223455566665 55678899999999
Q ss_pred CeeEEEEcCCCCCCCCceEEEec-CC-CEEEEEECCCcEEEEECC
Q 001396 604 VQLLTTIDAGGGLPENPRICFNK-NG-TLLAVIANENRIKILETP 646 (1086)
Q Consensus 604 ~~~~~~~~~~~~~~~v~~v~~s~-~~-~~l~~~~~dg~i~iw~~~ 646 (1086)
++.++++.... .+..++... ++ .+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998763 355555443 33 3555554 4578887654
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.7e-06 Score=88.14 Aligned_cols=258 Identities=15% Similarity=0.094 Sum_probs=175.1
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 467 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~ 467 (1086)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776555 567999999999999998654222222224668899999999999998 7888777 9999999988
Q ss_pred CCceeEEeecCCcceEEEeeccc-CCc--cEEEEEEcCCeEEEEEcCCCcee--EEecCCCCceEEEEEecCCCEEEEEe
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAK-ENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~-~~~--~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+-..+.-++...-| ..++|..+ ++- ..-++.-.+|.+.++|-....+. ..-..|..+|..+.+.+-+..+++..
T Consensus 85 n~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 76554333211111 11122112 111 22333456788999987655533 24456788999999999999988875
Q ss_pred eCCCCceeEEEEeCCC------CeeeeEEe------cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 543 TSKEGESFLVEWNESE------GAIKRTYQ------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~------~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
. .|.|.-|.... .+..-.++ +.........++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus 164 ~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 I----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred c----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 4 67899998763 11111111 11112356789999999999999999999999999998766544
Q ss_pred cCCC-------------------------------CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 611 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 611 ~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
.... +...-..++|...|++|+.++-=| |++.++.+++..+.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 2110 011224577888899998887754 8899999887776553
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.51 E-value=1.6e-05 Score=89.05 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=76.3
Q ss_pred EeecCCCEEEEEeCCeEEEEEccC-----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCcee----
Q 001396 803 ALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV---- 872 (1086)
Q Consensus 803 ~~s~dg~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~---- 872 (1086)
++.+||++... .++.|.+.|..+ .+.+..+. -......++++| ||++++++ ..+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34557876665 467899999988 34444444 556778999999 77766654 5588999999987542
Q ss_pred --------EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 873 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 873 --------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
+.+.+--.+ ....+|.++|+...|..-|..|..|++..
T Consensus 360 ~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 334333223 34578999999999999999999999986
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=4.1e-05 Score=89.81 Aligned_cols=283 Identities=11% Similarity=0.160 Sum_probs=162.9
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
..+.|.++.|--++.. +..+..+|.|.+-|.++....- ...-...|.+++||||++.+|
T Consensus 67 gd~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence 3469999999999985 7778888999999988876543 223457899999999999999
Q ss_pred EEeCCCEEEEEEecCCCccccceEec---cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeecCCcce
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPV 482 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 482 (1086)
..+..+++.+-+-. -..+... .+. ...+....+.|-....+ +.|+ .|....-+.... +.+.....+ +.=
T Consensus 126 liT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~ 198 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHK 198 (1265)
T ss_pred EEeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCC
Confidence 99988877664421 1111100 010 00112223334332221 1111 111111110000 000000111 122
Q ss_pred EEEeecccCCccEEEEE-----EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 483 YSLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
++++| ..||+++++. .....|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++...
T Consensus 199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 34566 6688888883 333789999876 3333333334445568999999999998876544 5578888743
Q ss_pred CCeeeeEEeccc-ccCCceEEEEEecCCCEEEE---EECCCcEEEEEcCCCeeEE--EEcCCCCCCCCceEEEecC-CCE
Q 001396 558 EGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFNKN-GTL 630 (1086)
Q Consensus 558 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~-~~~ 630 (1086)
|-.-..|.... .....+..++|+.++..|++ ......|++|-+.+..... .+..... .-+.|+|. ...
T Consensus 275 -GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 -GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKT 349 (1265)
T ss_pred -CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCcee
Confidence 33222222111 01144899999999998887 4455569999998765432 3332221 22778883 234
Q ss_pred EEEEECCCcEEEEECC
Q 001396 631 LAVIANENRIKILETP 646 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~ 646 (1086)
+.+...+|...+++..
T Consensus 350 L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEEecCCcEEEEEEE
Confidence 4444466666665543
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.49 E-value=4.5e-07 Score=63.07 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=3.8e-05 Score=84.87 Aligned_cols=285 Identities=12% Similarity=0.093 Sum_probs=163.8
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
|...|.--+++..+++ ++.|+.-|.+.+|+-.+|+.+... ..+-.+.+..+.+|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 3446777778888886 899999999999999888876531 233456777888999999999
Q ss_pred EEeCCCEEEEEEecCCCccccceE---eccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 479 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 479 (1086)
+|+..|.|.|+-+..+........ -..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999887443222111 123678999999999999 7999999999998887762 1123333455
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc--eEEEEEecC----CCEEEEEeeCCCCceeEEE
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--CTRMAYSAN----GRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--i~~~~~s~d----~~~l~~~~~~~~~~~~i~i 553 (1086)
+.|..+... ++.+|++...- ..+++.+.......-+..... -...+|-|. .+-.+.|+.. -.++
T Consensus 171 s~IVQlD~~---q~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP-----G~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLTR--CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP-----GLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhhh--hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecC-----CCce
Confidence 666666542 22333333322 223433332221111111111 234455443 3334444432 2677
Q ss_pred EeCC-CCeeeeEEecccc------cCCceEE---------------EEE----ecCCCEEEEEECCCcEEEEEcCCCeeE
Q 001396 554 WNES-EGAIKRTYQGLQL------QHNSVSV---------------VHF----DTAKDQILAAGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 554 wd~~-~~~~~~~~~~~~~------~~~~v~~---------------~~~----~~~~~~l~~~s~dg~i~iwd~~~~~~~ 607 (1086)
|..+ .|+.+++.+-... ....+.+ +.| .-.+.++++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8655 3555444321110 0000000 000 01122455544444 888888776655
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.-..... .|..+ +..++-|++-..|+.+++..+.+.
T Consensus 320 l~se~~~---DI~dV--s~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 320 LWSEGGH---DILDV--SHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EeecCCC---ceeEE--eecCceEEEEecCCceeEEEeehh
Confidence 4443222 23333 334666666667776666665543
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=6.3e-07 Score=62.33 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEe
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 357 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd 357 (1086)
++++++.+|.+.|++++|+|+++ ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46789999999999999999998 599999999999997
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.40 E-value=0.00038 Score=77.03 Aligned_cols=303 Identities=13% Similarity=0.109 Sum_probs=157.4
Q ss_pred ecCCCEEEEEeeCC-----CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 532 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 532 s~d~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888887643211 1245699999999876555444 3 5788899999999998886 47899999888754
Q ss_pred EEEEcCCCC----------------CCCCceEEEecCCCEEEEEECC-CcEEEEECC---CCCeeeeccccccceeeeEE
Q 001396 607 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV 666 (1086)
Q Consensus 607 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~v~~~~~ 666 (1086)
.+... .+. ...-..+.||||+++|+....| ..|..+.+. .... .-..+..+.+
T Consensus 76 ~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 43222 110 1223578999999999876543 334433322 1100 0001111222
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCccc--eeeeeecCCccccccccC--CcccccceEEEEEecCCce
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE--VEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 742 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~--vw~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~ 742 (1086)
. ..|..+..++ ++++...+.. .+..+ ......-+..+.|++++..
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 1122222222 3333322211 11111 0123556889999999984
Q ss_pred EEEeecc---ceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee-cCCCEEEEEe--C
Q 001396 743 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 816 (1086)
Q Consensus 743 l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~~--d 816 (1086)
++....+ ..+.+. +.|+.++.+.........+--.......+. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~--------------------~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLV--------------------LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEE--------------------EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEE--------------------EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 4443322 222222 233444433322222111122223356665 7776666655 4
Q ss_pred C--eEEEEEccCceEEEEEcCCCCCeEE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEeccccCCeEEEEEe
Q 001396 817 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 889 (1086)
Q Consensus 817 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~v~~l~~s 889 (1086)
| .|.+++..++.. ..+....-.|+. +.++++++.+..++..++ .|+.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 4 477777776663 455555666755 678884455556666533 66666677233445555433333689999
Q ss_pred CCCCEEEEE
Q 001396 890 DALNILVSS 898 (1086)
Q Consensus 890 pdg~~l~s~ 898 (1086)
|+|++++-.
T Consensus 337 pdg~y~v~~ 345 (353)
T PF00930_consen 337 PDGKYYVDT 345 (353)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998754
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=6.2e-06 Score=93.00 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=130.7
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEE
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 885 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~ 885 (1086)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334455554 577888999998888777655555555544 6789999999999999999999999999999999976
Q ss_pred EEEeCCCCEEEEEeC---------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC--CEEEEEeCCeEE
Q 001396 886 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA 954 (1086)
Q Consensus 886 l~~spdg~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~d~~i~ 954 (1086)
+.. .|+.|+++|. |.-|+|||+..-+... .++.+.+ ..-+.|.|.- +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 555 6899999986 4458999998744222 3333333 2346777753 334447888888
Q ss_pred EEEcC---CccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEE
Q 001396 955 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1000 (1086)
Q Consensus 955 vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd 1000 (1086)
+-|.. ....-......-...+..+++|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88833 22111111222255699999999999999999999999998
No 330
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.38 E-value=4.7e-06 Score=80.17 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=118.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCce-eEEEecc-ccCCeEEEEEeCCCCEEEEEe-----CCCcEEEEECCCCceeeeeeee
Q 001396 849 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 921 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~v~~l~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~ 921 (1086)
-+.-++++..||.+.+++.+.-. ...++.. |.+. -+.+....++.+.+++ .-+..++|+++...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-------- 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-------- 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence 45678999999999999876521 1111111 2221 1222333444444332 12235667766522
Q ss_pred ccCCCccCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC-CCCEEEEEECCCcEEE
Q 001396 922 TPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 922 ~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~~~Dg~v~v 998 (1086)
.+.........|++++-.|....+++ +.||.+.+||.+.......++..|..+|+.+-|.| ++..|+++++||.+--
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11111111134888999998776665 47889999999999888888889999999999999 6789999999999999
Q ss_pred EEcCCCceeeeecc---ccccCCCCccCcc--------cceEE-EECCCCCCEEEEEeCCCcEEEEc
Q 001396 999 HEASNLEVQCRILS---TAYLRPTTSCLHV--------YPHAI-AAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 999 Wd~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~-~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
||..+.-+-...+. ..|+....-.+.+ ...++ .|+- -|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 99885322211111 1122211101100 01122 2333 367899999999998875
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.36 E-value=0.0012 Score=70.18 Aligned_cols=279 Identities=13% Similarity=0.123 Sum_probs=139.7
Q ss_pred eeecCCCceEEEEEeccCc--EEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEECCCCCEEEEEeC
Q 001396 334 MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~ 410 (1086)
=+|.+||++||.++..||. +.+-|+.+++... |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 3789999988888877765 6667788887654 33322 22224667899999887767
Q ss_pred CCEEEEEEecCCCccccceEeccccccEeEEEec--CCCCcEEEEEEe----------------------CCCcEEEEeC
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 466 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s--~d~~~l~l~s~~----------------------~d~~i~iwd~ 466 (1086)
...++--|+++.+... .+......+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7789999999876322 233444445445553 3455 333221 1234556678
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEE---cCCe-EEEEEcCCCcee-EEecCC--CCceEEEEEecCCCEEE
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGK-IKAWLYDSLGAR-VDYDAP--GLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~-i~vwd~~~~~~~-~~~~~~--~~~i~~~~~s~d~~~l~ 539 (1086)
.+|+....+. ....+..+.|+|... .+|.-|- .+.. -|+|-++..... ..+..+ ...+..=-|.|||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8877544443 556677778876533 3343332 2222 367766543332 222221 22344556899999888
Q ss_pred EEee-CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC----------------CcEEEEEcC
Q 001396 540 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN 602 (1086)
Q Consensus 540 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~ 602 (1086)
..+. .+..+..|.-+|+.+++....... .....+--++||++++.=+.| --|+++++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 7554 334467888999998876443332 234455567888877663322 156778888
Q ss_pred CCeeEEEEcCC--------CCCCCCceEEEecCCCEEEEEEC-CCcEEEEE
Q 001396 603 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 644 (1086)
Q Consensus 603 ~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~ 644 (1086)
.+......... .....-....|+|||+.++..++ .|...||-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 77654322211 01112357899999998877665 56666654
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=2.9e-06 Score=84.90 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=110.3
Q ss_pred EEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCc
Q 001396 854 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 933 (1086)
Q Consensus 854 asg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 933 (1086)
++.+.+-.|-+-|+.+|-. ..|. ..+.|.++.|.-.+.++..|...|.|...|+.........+.+.+.... .|
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S----sv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS----SV 301 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCc----ch
Confidence 4445567788999988743 3333 5567889999988899999999999999999875433333333332222 47
Q ss_pred eEEEEec-CCCEEEE-EeCCeEEEEEcCCccc---eeccccCCccCEEEE--EEeCCCCEEEEEECCCcEEEEEcCCCce
Q 001396 934 THIQFHK-DQTRFLL-VHETHLAIYEAEELTC---LKQWFPISSVPISQA--TFSCDCRMVFTSFVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 934 ~~~~~s~-dg~~l~~-~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~l--~fs~dg~~l~s~~~Dg~v~vWd~~~~~~ 1006 (1086)
+++..-. ++.+|.+ +.+|+|++||.+--++ +.+ ..||...-..+ ...+....++++|.|+..|||.++.|.+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q-YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ-YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceee-eecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 7777665 6666666 7999999999986666 665 56774333333 3345667899999999999999999999
Q ss_pred eeeec
Q 001396 1007 QCRIL 1011 (1086)
Q Consensus 1007 ~~~~~ 1011 (1086)
++++.
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 98886
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00021 Score=80.95 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=127.6
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc-----EEEEeCCCC--
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-----IKVWDAVTG-- 469 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-----i~iwd~~~~-- 469 (1086)
+|++.+..+|.|+.+|.|.+.+-. . +....+..+...+...-+.-+++. +|++.+.|+. ++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~--~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--F--QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--c--eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 468899999999999977776632 2 222246666666333334444433 6777776654 899998632
Q ss_pred ----cee--EEeec-----CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC---CceeE-EecCCCCceEEEEEecC
Q 001396 470 ----SRT--YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARV-DYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 470 ----~~~--~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~-~~~~~~~~i~~~~~s~d 534 (1086)
.++ +.+.. ...++.+++++. +-..++.|-.+|.|..+.-+- ..... .......+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 12222 245677777754 567899999999999984322 12222 23344568999999999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCee-eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
++.++.+.. ...|.+|.+....+ ...+..+ ...++|..+++....+++++. ..+.+|+.....+-..+.
T Consensus 183 ~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~---G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNN---GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe----cceeEEEEecCCCcceeeeccC---CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 988332222 34588888874442 2223433 378899999887765666654 468999987655555554
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.00012 Score=75.31 Aligned_cols=250 Identities=12% Similarity=0.100 Sum_probs=143.5
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
.+.+.+|...|..++|||..+-|+..++.+.+|.|.|+++...+.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 3467889999999999998876789999999999999999877754 3334 7899999998
Q ss_pred CCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEe------cCCCCcEEEEEEeCCCcEEEEeCCC--Cce
Q 001396 401 DGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR 471 (1086)
Q Consensus 401 dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~------s~d~~~l~l~s~~~d~~i~iwd~~~--~~~ 471 (1086)
|.. +|..|..+|.|.|||+...+.......-.-...+|..++. .+-|. +++..+.+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 754 5667778899999999876543321111112334444443 33344 44444433 55666432 222
Q ss_pred eEEee-cCCcceEEEeecccCCccEEEEEEcCCe------EEE-EEcCCCceeEEe-cCC-CC------ceEEEEEecCC
Q 001396 472 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG 535 (1086)
Q Consensus 472 ~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~------i~v-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~d~ 535 (1086)
...+. +..+...++..++..+ +.|++.-.+.+ |-. -|...+..+... ..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22221 2344555666554333 34444433210 000 111122111111 001 11 11122223556
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++++..+. ..+.+.+||..+++.++++.... +|..++... ++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 36789999999999999988743 676666543 33334444455667777643
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.17 E-value=0.0018 Score=74.84 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=81.2
Q ss_pred EEEEEEcCCeEEEEEcCCCceeEEecCCCC------ce--EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001396 495 FIFSISVDGKIKAWLYDSLGARVDYDAPGL------GC--TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~i--~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
.++.++.++.|.-.|..+++.+..+..... .+ ..+++ .++..++.+.. ++.|+-+|.++|+.+-.+.
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~----~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTF----DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecC----CCeEEEEECCCCCEeeeec
Confidence 677788889999999988888776654332 00 01111 12245555543 6789999999999887776
Q ss_pred ccccc--CCce-EEEEEecCCCEEEEEE---------CCCcEEEEEcCCCeeEEEEcCCCCC------------------
Q 001396 567 GLQLQ--HNSV-SVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGL------------------ 616 (1086)
Q Consensus 567 ~~~~~--~~~v-~~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~------------------ 616 (1086)
..... ...+ .+..+. +..++.++ .+|.++.+|..+|+.+.........
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 53300 0001 111222 24455554 3688999999999988877543110
Q ss_pred CCC-ceEEEecCCCEEEEEECCC
Q 001396 617 PEN-PRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 617 ~~v-~~v~~s~~~~~l~~~~~dg 638 (1086)
..+ ...++.+.+.++++++.++
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCC
Confidence 001 1345555567788887665
No 336
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.17 E-value=9.9e-07 Score=67.77 Aligned_cols=54 Identities=33% Similarity=0.557 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCH
Q 001396 30 FDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 84 (1086)
Q Consensus 30 ~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 84 (1086)
.++..++++|++|+|+.|++.+............ .+.|.|++|+|+||++.++.
T Consensus 3 ~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 3 DERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999887433322333 39999999999999988764
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.16 E-value=3.3e-05 Score=87.37 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=142.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
.++.|+-...+..+|+.+++..+......+.|.-|+. +++.+.+|...|+|.+-|..+.+.+.++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 5777888888999999999888777656656777754 667999999999999999999999999999999885 4
Q ss_pred EecCCCEEEEEeeCCC-----CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCC-
Q 001396 531 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 603 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 603 (1086)
|+-.|+.|++||.+.. .|..|.+||++..+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 6678999999987542 36789999999887766665544 22 44667776 35678888899999988432
Q ss_pred Cee-EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 604 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 604 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+ ......+...+.+..+.++++|..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 2222222223458899999999999999999999999843
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0001 Score=82.71 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=129.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 917 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~ 917 (1086)
..++|++++ +++++-|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||.|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777775 4699999999999999987 344 444446554 56899999999999999999988654332
Q ss_pred eeeeccCCCccCCCCceEEEEecC-----CCEEEEEeCCeEEEEEcCCcc-ceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 918 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 918 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
..++ .++.+++++|| .+.+++|+...+.++.-.=.. ..........++|.++.| .|.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 2222 25889999998 566777544447777643111 111112234789999988 467888887
Q ss_pred CCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 992 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 992 ~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.+| |+|||+.+++.+..+.+....+. ...++..+.|.+ ...|+. |...+|.+..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEE-ecCCeEEEEEEe
Confidence 776 99999999999988774442211 234456688986 344444 566678888887
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00045 Score=78.31 Aligned_cols=203 Identities=11% Similarity=0.108 Sum_probs=134.5
Q ss_pred EEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCC-eEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc----
Q 001396 802 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 870 (1086)
Q Consensus 802 l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~---- 870 (1086)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |..+-... +..+|++.+.|+ .|+||++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888888887 688877764 34555777777766 44444433 456888877765 5899998643
Q ss_pred --eeE--EEecc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 871 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 871 --~~~--~~l~~-----h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
+++ ..+.. ...++.+++.|.+-+.+|.|-.+|.|..+.=+--..+..+..-...+. ++|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 11222 345788999999999999999999998875332111111111122222 47999999999
Q ss_pred CCE-EEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 942 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 942 g~~-l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
++. +.++.-..|.+|.+............|...+.+..|++....+++++ +..+.+|+.+.......|.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 988 55567788999999843323333556788888888887655466554 4579999988655544443
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00033 Score=78.81 Aligned_cols=185 Identities=12% Similarity=0.134 Sum_probs=123.3
Q ss_pred eEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCE
Q 001396 731 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 810 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 810 (1086)
+.+.+++ ++.++.|+.+|.+++++.+.+.. +.. .|... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------~~~----------~~s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------TNF----------DHSSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccc------------------ccc----------ccccc------ccCCce
Confidence 3444443 56788899999999887654310 000 02211 568999
Q ss_pred EEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCc--eeEEEeccccCCe
Q 001396 811 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRV 883 (1086)
Q Consensus 811 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~v 883 (1086)
+++++ ||+|.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.-- +....+..-.|+|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 7999999998888777665 5578999999993 256888899888 777753321 1112355567899
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcC
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 959 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 959 (1086)
.++.|. |.++|-++.+| |+|||+......+ .++.+............+.|.++.+ |+.|-..+|+|..++
T Consensus 164 ~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 999995 88999999888 9999998855333 2222222111112234566666554 666777778888877
No 341
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.0074 Score=64.34 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=114.0
Q ss_pred EEECCCCCEEEEEeC---CCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 396 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 396 l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
=+|.+||+.|+.++. ...+.+.|+.+++..+ +..+. .......++++++ .++-......++--|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 357889988887765 4468888888876443 33332 2233567788888 454444556899999999887
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEc----------------------CCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
...+......+-...+..+.|+..++..-. ...|.--|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666666666666666665667666544321 1234445666655444443 44567788
Q ss_pred EEecCC-CEEEEEeeCCC--CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-----CCCcEEEEEc
Q 001396 530 AYSANG-RRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 601 (1086)
Q Consensus 530 ~~s~d~-~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----~dg~i~iwd~ 601 (1086)
.|+|.. ..|+.|....- .+..|.+.+.... ..+.+..+. ....+..=.|.|||..|.--+ .+..|.-+|+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 999955 45555554321 1234544454333 233333222 123455567899998876632 3446777888
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 602 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 602 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
.+++........ .....-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887655433322 23456667888877654443
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.014 Score=66.60 Aligned_cols=251 Identities=15% Similarity=0.101 Sum_probs=139.2
Q ss_pred CceEeeecCCCceEEEEEeccCc----EEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGD----TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+....+||||++++.+-+..|. +++.|+.+|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 34467899999976666555554 99999999977653 11 11 112239999999888
Q ss_pred EEEeCC-----------CEEEEEEecCCCccccceEecccccc--EeEEEecCCCCcEEEEEEeCC--CcEEEEeCCCC-
Q 001396 406 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 469 (1086)
Q Consensus 406 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~s~d~~~l~l~s~~~d--~~i~iwd~~~~- 469 (1086)
+....+ ..|+.|++.++..-. ...+.+.... ...+..++|++.+++.+.+.. ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776432 247788877664321 1234443333 568899999996433333322 35788888775
Q ss_pred ---ceeEEeecCCcce-EEEeecccCCccEEEEE---EcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCCEEE
Q 001396 470 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 470 ---~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~---s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
.....+......+ ..+... ++.+++.. ...+.|...++..... ...+..+...+.-..+...+++|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333443333333 333322 33333333 2345677777777653 224444444333334445566666
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE--EE--CCCcEEEEEcCCCeeE
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~ 607 (1086)
.... .++...|+++++..+.......... .+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 3457789999998445545554433 245666666666665543 22 3467888888887754
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=0.00037 Score=76.44 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=83.2
Q ss_pred CCCeeEEEeec-CCCEEEEEe-----CCe----EEEEEccCceEEEE---EcCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001396 796 QEAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 862 (1086)
Q Consensus 796 ~~~v~~l~~s~-dg~~l~~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 862 (1086)
+....++.||. +...+.+.. +|. ..+|++...+..+. --.....+.+++++| +...++.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 34446777776 344444432 232 56777765543221 123667899999999 88999999999999
Q ss_pred EEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 001396 863 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 863 ~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
.+||...+... +..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999876332 22344567889999999999999999999999987533
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.97 E-value=0.045 Score=63.55 Aligned_cols=110 Identities=9% Similarity=0.072 Sum_probs=65.7
Q ss_pred EEEEEEcCCeEEEEEcCCCceeEEecCCCC-ceE----------EEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 495 FIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCT----------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~----------~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
.++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++. ++.+.-.|..+|+.+-
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVVW 144 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEEe
Confidence 677777788888888888888776654221 111 1122 2234555443 6679999999999876
Q ss_pred EEecccccC-CceEE-EEEecCCCEEEEEE------CCCcEEEEEcCCCeeEEEEcC
Q 001396 564 TYQGLQLQH-NSVSV-VHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 564 ~~~~~~~~~-~~v~~-~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
......... ..+.+ -... + ..++.+. .+|.|+.+|.++|+.+-....
T Consensus 145 ~~~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 655321000 11111 1111 3 3555543 268999999999998877643
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.0038 Score=72.24 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=139.8
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC---ccEE-EEEECCCCCEEEEEe---------C
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG---VSVN-RVVWSPDGSLLGVAY---------S 410 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~-~l~~spdg~~las~~---------~ 410 (1086)
++.++.++.|.-+|.++|+.+-..... .+. ..+. ...+ .+..++.++ .
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~ 173 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGV 173 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEE--ECCEEEEeccccccccCCC
Confidence 667788999999999999987653321 110 0010 1111 123444443 3
Q ss_pred CCEEEEEEecCCCccccceEecc----------------cc-ccE-eEEEecCCCCcEEEEEEeCCC-------------
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK------------- 459 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~v~~s~d~~~l~l~s~~~d~------------- 459 (1086)
++.+.-+|..+|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCC
Confidence 67888889888876442211000 00 011 1234444455 455565444
Q ss_pred -----cEEEEeCCCCceeEEeecCCcceE------EEeecc--cCCc---cEEEEEEcCCeEEEEEcCCCceeEEecCCC
Q 001396 460 -----TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 460 -----~i~iwd~~~~~~~~~~~~h~~~v~------~~~~~~--~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 523 (1086)
.|.-.|.++|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 799999999999877642111110 001100 0122 267888899999999999999887654321
Q ss_pred CceEEEEEecCCCEEEEEeeC--------------CCCceeEEEEeCCCCeeeeEEecccccC-----CceEEEEEecCC
Q 001396 524 LGCTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAK 584 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~ 584 (1086)
..++.+| ..++..... ...++.+.-.|..+|+.+-......... .+...-.....+
T Consensus 332 ---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g 406 (488)
T cd00216 332 ---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG 406 (488)
T ss_pred ---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence 1123333 333332110 1235678899999998776665431000 011111111245
Q ss_pred CEEEEEECCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
..+++++.||.|+.+|..+|+.+...+....
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 7889999999999999999999988876543
No 346
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=5.2e-05 Score=77.32 Aligned_cols=165 Identities=18% Similarity=0.286 Sum_probs=115.6
Q ss_pred hHHHHHHHHHhhhccCchhhhhh--------------ccccHHHHHHHHhCCCHHHHHHhhccCc-ccccccccceehhh
Q 001396 5 NKDLVFLILQFLNEEGFTESAHI--------------FYFDMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 69 (1086)
Q Consensus 5 ~~evvrli~q~L~~~G~~~s~~~--------------~~~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 69 (1086)
+.-+-|+|..+|.-+||..+|.. ....+...+++|++|+...|+...+... .|. +....+-|-
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 44567999999999999999988 2235667889999999999998876552 222 222338899
Q ss_pred hhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccCCChHHHHHHHH--HHHhhcc
Q 001396 70 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMML--ELKQIIE 147 (1086)
Q Consensus 70 i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~ 147 (1086)
++.|.|+||+..+++.+|+++.+++|.|......++++....+|.++...+... +.+-....|=..+. .++.+.+
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~ 269 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALK 269 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999998777888999999999865332211 11111233433333 4555444
Q ss_pred cCccccccccCCCCCchHHHHHHHHhHHhhhh-cCCC
Q 001396 148 ANPILQGKLKFPSIKRQRLRRLINQSLNWQHV-HCAN 183 (1086)
Q Consensus 148 ~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~-~c~~ 183 (1086)
- +.+|+ ..+|..+|+--+..|.. .|..
T Consensus 270 l-------~~i~~--~~~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 270 L-------FGIPI--NPALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred H-------hCCCC--CcHHHHHHHhhhhhcccccccc
Confidence 3 12221 33688888877777755 3433
No 347
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.95 E-value=0.0017 Score=75.54 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=119.2
Q ss_pred CCeEEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCC-CcEEEE-
Q 001396 838 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVW- 907 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-g~i~iw- 907 (1086)
..+.+.++|| +|+.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.+++.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776554 243 55555643 3332223332 37889999999988877533 222222
Q ss_pred ----------ECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEE---EEcCCccc-e---eccccC
Q 001396 908 ----------DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPI 970 (1086)
Q Consensus 908 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v---wd~~~~~~-~---~~~~~~ 970 (1086)
+++.++... ...+.|..+.|||||+.+|...+++|++ -....|+. + ..+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence 333322110 1124699999999999999966788877 45455541 1 111222
Q ss_pred CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001396 971 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1050 (1086)
Q Consensus 971 h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~ 1050 (1086)
-...+.++.|..++.++ ++..++...+|.+.-.-...... +.. +-.....+++-.| ..+.+++.+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-----~~~--n~~~~v~~vaa~~---~~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-----PSR--NLSAPVVAVAASP---STVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-----CCC--CccCceEEEecCC---ceEEEEcCCceEE
Confidence 23446889999999855 55555555566544322211110 111 1111234566665 3566777777555
Q ss_pred EEccCCCCCCCCCCCcccccCCC
Q 001396 1051 VIEPNEPGDTWAVLPPDEIVGDQ 1073 (1086)
Q Consensus 1051 vw~~~~~~~~~~~~~p~~~~~~~ 1073 (1086)
+=.-......|...|+..-....
T Consensus 564 l~~~~~~~~~W~ev~~l~g~~~~ 586 (591)
T PRK13616 564 LPNSDSGDQYWREVPGLMGPRAA 586 (591)
T ss_pred ecCCCCCCCCceECccccCCCcc
Confidence 44334445678877776654443
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0036 Score=69.00 Aligned_cols=278 Identities=13% Similarity=0.129 Sum_probs=142.7
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.|+.+.|+++...++++...|.|.+|++..+......... .-..+.+.+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~----------------------------~~~~~~~~~~-- 52 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP----------------------------PDLDYNFRRF-- 52 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC----------------------------cccCcccccc--
Confidence 5788999999989999999999999998765431100000 0000000000
Q ss_pred EEEEEeCCeEEEEEcc---------CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--ecc
Q 001396 810 YLFSASGGVISLYIVM---------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 878 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~ 878 (1086)
...++.-.+-|+. .......+....++|++++.|. =| ++|+|..+|.+.|.|++....+.. +..
T Consensus 53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 0000011111211 1122333444578999999985 44 999999999999999987776644 222
Q ss_pred ------ccCCeEEEEEeC-----CC---CEEEEEeCCCcEEEEECCC-C-ceeeeeeeeccCCCccCCCCceEEE-EecC
Q 001396 879 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 941 (1086)
Q Consensus 879 ------h~~~v~~l~~sp-----dg---~~l~s~s~dg~i~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~-~s~d 941 (1086)
....|+++.|+- |+ -.|+.|...|.+.+|.+-. . ..-..........+. +.+..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence 234688898872 33 4678889999999998752 1 111111111111111 2344433 4322
Q ss_pred ---------------------CCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEe-----CCCCEEEEEECCCc
Q 001396 942 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGT 995 (1086)
Q Consensus 942 ---------------------g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~s~~~Dg~ 995 (1086)
..+++++.+..++++...+.+...+.. ........+++- ..+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125566889999999999888776655 222333444552 35677888999999
Q ss_pred EEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 996 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 996 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
|+++.++..+.+........... -+....++++ +|+.++-.+. ..+.++.+
T Consensus 284 i~i~SLP~Lkei~~~~l~~~~d~------~~~~~ssis~-~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSLPPPLDS------RRLSSSSISR-NGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEEEETTT--EEEEEE-SS---H------HHHTT-EE-T-TS-EEEE-SS-SEEEEEEE
T ss_pred EEEEECCCchHhhcccCCCcccc------ccccccEECC-CCCEEEEeCc-ccEEEEEE
Confidence 99999999999988773211111 1112344566 5776655544 34444333
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0024 Score=70.28 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=136.2
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceee------ee------------eeeeeeccc------cceeeeeee
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGA------CSMLFKTAL 385 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~------~~------------~~~~~~~~~------~~~~~~~~~ 385 (1086)
.|+++.|+++... ||+|...|.|.||.+...+.-. .. .-.+-|+.. .....+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999775 8999999999999886543221 00 112223322 122344556
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEecc------ccccEeEEEec---C--CC-CcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---A--PC-KQISVI 453 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~v~~s---~--d~-~~l~l~ 453 (1086)
+....++|++++.| |=-++|.|+.+|.+.|.|++....+.. ..+.. ....|+++.|+ . |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 77778999999998 666999999999999999977655432 12222 33468888886 2 22 124788
Q ss_pred EEeCCCcEEEEeCC-C--Ccee----EEeecCCcceEEEeecccCCc-------------------cEEEEEEcCCeEEE
Q 001396 454 TCGDDKTIKVWDAV-T--GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 507 (1086)
Q Consensus 454 s~~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~s~dg~i~v 507 (1086)
.|...|.+.+|.+. . +... .....+.++|..+......+| +-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2221 112246677766653211111 23555566888999
Q ss_pred EEcCCCceeEEecCCCCceEEEEEe-----cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-cCCceEEEEEe
Q 001396 508 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 581 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~~~~i~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 581 (1086)
+...+.+...........+..+++- ..+..|++... ++.++++.+..-+.+..+..... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777666554332344445553 34555666554 77899999998877777665320 11234445566
Q ss_pred cCCCEEEEE
Q 001396 582 TAKDQILAA 590 (1086)
Q Consensus 582 ~~~~~l~~~ 590 (1086)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644443
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.90 E-value=0.0041 Score=63.30 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=112.6
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.|.+-.+++..++|.|+.+.|+|+....+.|...+. +|+.+.... +.+ .+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 4566767789999999998778888888899988886 477776533 333 357788999988
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccc-----eEec---cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC---Cc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 470 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~~~---~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~---~~ 470 (1086)
+.++++--.++.+.++++......... ..+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888877767899999998443221111 1111 24456899999999885 44445555555655443 22
Q ss_pred eeEEe--------ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC---------CceEEEEEec
Q 001396 471 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 533 (1086)
Q Consensus 471 ~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 533 (1086)
.+... ......+.++++++. .+++++.......|..+| ..++.+..+.... ...-.|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 21111 113345778888765 567888888888999998 4455444333322 2567899999
Q ss_pred CCCEEEEE
Q 001396 534 NGRRLFSC 541 (1086)
Q Consensus 534 d~~~l~~~ 541 (1086)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00073 Score=75.15 Aligned_cols=196 Identities=19% Similarity=0.163 Sum_probs=117.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
...+.+..-...+..-+|+|+++.+....-.. ..+.++|+.+++.....+ + .+.-..
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~---~g~~~~ 242 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F---NGNNGA 242 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c---CCccCC
Confidence 34455565566888889999998744443332 349999999988665422 2 233446
Q ss_pred EEECCCCCEEEEEe-CCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--EEEEeCCCCc
Q 001396 396 VVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGS 470 (1086)
Q Consensus 396 l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~--i~iwd~~~~~ 470 (1086)
.+|||||++||.+. .|| .|++.|+.++...+ +..-.+.-+.-.|+|||+.+ +++.+..|. |.+.|++.+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~i-vf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSKI-VFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCEE-EEEeCCCCCcceEEECCCCCc
Confidence 78999999998874 444 57777888776332 33333333477899999963 344444554 5666766555
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcC-Ce--EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
. ..+....+.-..- ..++||.+++..+.. |. |.+.|+.+... ..............+.++|+.+...+.
T Consensus 318 ~-~riT~~~~~~~~p--~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 318 V-TRLTFSGGGNSNP--VWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred e-eEeeccCCCCcCc--cCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 4 3332222211122 236688888777643 44 55556555543 222222233445678889988887664
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.89 E-value=0.0051 Score=67.77 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=80.4
Q ss_pred ceEEEEecC-CCEEEEE-----eCCe----EEEEEcCCcc--ceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEE
Q 001396 933 ETHIQFHKD-QTRFLLV-----HETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1000 (1086)
Q Consensus 933 v~~~~~s~d-g~~l~~~-----~d~~----i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd 1000 (1086)
..++.||-. ...+.+. .+|. -.+|+....+ ++..........|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 466778763 3444431 2332 4567665443 33333345688999999999999999999999999999
Q ss_pred cCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1001 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
...+..... . ..+.|..++|+| +|..+++|+..|.+.+||+--+
T Consensus 288 ~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 988744422 1 124566899999 7999999999999999997533
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.0049 Score=62.79 Aligned_cols=216 Identities=11% Similarity=0.101 Sum_probs=117.1
Q ss_pred EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccc-cCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001396 831 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 831 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 909 (1086)
+.+.+-...+..++|.|+++.++++....+.|..++.. |+.+..+.-. .+..-.|++..++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34556667799999999667788888888999999975 7877766432 355888999988888877667999999998
Q ss_pred CCCc--eeee--eeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCC---ccceec-----c--ccCCccC
Q 001396 910 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQ-----W--FPISSVP 974 (1086)
Q Consensus 910 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~---~~~~~~-----~--~~~h~~~ 974 (1086)
.... .... ..+..... ......+..++|++.+..|+++ ...-..+|.+.. +..+.. + .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422 1111 11221111 1112368999999998777775 444455665543 111110 0 1123567
Q ss_pred EEEEEEeCCC-CEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001396 975 ISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 975 v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw 1052 (1086)
++++.|.|.. .+++.+.....|..+| .+|+.+..+....-... .....-.+-.++|+| +|++.+ .+.-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g-l~~~~~QpEGIa~d~-~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG-LSKDIPQPEGIAFDP-DGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T--EEE-EETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC-cccccCCccEEEECC-CCCEEE-EcCCceEEEe
Confidence 8999999854 5666677778899999 77887766653221100 001122357799998 565544 4566666554
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.0073 Score=59.88 Aligned_cols=256 Identities=16% Similarity=0.148 Sum_probs=143.0
Q ss_pred ceEEEEEecCCCE-EEEEECCCc-EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CcEEEEECC
Q 001396 574 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 646 (1086)
Q Consensus 574 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~ 646 (1086)
.-..++|+|..++ ++.+-.-|+ ..++|..+.+...++.........-.-.|||||.+|+..-.| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 4456778887554 344555555 578999998888777655443333456799999999876543 678888876
Q ss_pred CC-CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCc
Q 001396 647 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 725 (1086)
Q Consensus 647 ~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 725 (1086)
.+ ..+..+..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred ccccceEEEEEecCCceEEEeeccceeEEe-eccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEe
Q 001396 726 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 804 (1086)
Q Consensus 726 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~ 804 (1086)
|.-....+.+.+||+.++.+.. -|... ++...++..+.. .-++.+.+..+|..+....++..-+...|..++.
T Consensus 160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 2222334566677776554432 23222 221111111100 0123445666666566655653346778999999
Q ss_pred ecCCCEEEEEe-CCe-----EEEEEccCceEEEEEcC-------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 805 SKNDAYLFSAS-GGV-----ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 805 s~dg~~l~~~~-dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
.+||..++.+. .|. --+=-...++.+.-+.- ....|-+++.+.+++-..++.-..+...+||..+|.
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 99998887664 121 11111123333333322 224678899987455455555555688899999998
Q ss_pred eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 872 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 872 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
.+..-.-- ....++ +.+.-++..+.+|.+.+++
T Consensus 314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 76543211 112222 2344455566778787773
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.011 Score=66.30 Aligned_cols=199 Identities=17% Similarity=0.175 Sum_probs=111.0
Q ss_pred EEEeecCCCEEEEEeCC------------eEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001396 801 CFALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~ 868 (1086)
.++.+|.|.-+|...+. .|+||+.. |+.+..+.=..+.+.++.|+. +. .|++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC
Confidence 35666666666666544 58999875 556665543348999999997 55 45556789999999987
Q ss_pred Ccee-------EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee-eeeee-eccCCCccC--CCCceE-E
Q 001396 869 SSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSL-QTPDGVMTL--APSETH-I 936 (1086)
Q Consensus 869 ~~~~-------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~~~~~~--~~~v~~-~ 936 (1086)
|+. +....-....+....+..+|-.+.+ .++.+.+- ...... ..+.+ ..+...... ...... .
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccce
Confidence 333 1111112222333344445533333 34434333 222111 10111 111110000 001111 3
Q ss_pred EEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 937 QFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 937 ~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
.++.+....+. ..++.+.+.+....+. . ...+++..++.||+|++||.-..+|.+.|...+-.+..+.+..
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 35555554444 4455566444332211 1 1246899999999999999999999999999888888877763
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0027 Score=70.75 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=121.8
Q ss_pred eccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE-EEEEcCCeEEE
Q 001396 431 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKA 507 (1086)
Q Consensus 431 ~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~v 507 (1086)
+..-...+..-+|+|+++.+..++-...+ .+.++|+.+++....+. ..+.-..-.| ++||+.| ++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~f--spDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAF--SPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccC--CCCCCEEEEEECCCCCccE
Confidence 33445567788999999975555444444 59999999987665543 2222223345 4465555 55566776554
Q ss_pred --EEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 508 --WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 508 --wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
.|+....... +....+.-..-.|+|||+.++..+ ++.+.-.|++++.+.+...+...... .. ..-.|+|||+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~---~~-~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG---GN-SNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC---CC-cCccCCCCCC
Confidence 5666655333 333333344778999999999886 45667789999988776633332222 12 2667999999
Q ss_pred EEEEEEC-CCc--EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 586 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 586 ~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+++..+. +|. |.+.|+.++.....+.... ....-.+.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 9988664 344 6667776666544444322 23456778888877665543
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.80 E-value=0.0038 Score=69.76 Aligned_cols=223 Identities=10% Similarity=0.070 Sum_probs=118.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+......+..+.++|+|++++++ .+|.-.|+.... .+. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33445567899999999999995 577777877322 121 2234556789999665 56666688899974
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
--+.+....++.. ..+..+.. |.+|...+. +.|.+||+++++.+..+... +|..+.|+++|++++..+.
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 3333333333321 22333321 455555544 48999999999888887755 3889999999999999873
Q ss_pred CCceeEEEEeCCCC-----------eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee--EEEEcC
Q 001396 546 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA 612 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~ 612 (1086)
..+++++.... .......... ..|.+.+|..+ .++-.+.. .++. +-.|+. +..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-
Confidence 34666653322 0222222212 57888888866 44444444 6665 334433 33332
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
..+.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2356777888778888888888888887763
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.79 E-value=0.017 Score=65.92 Aligned_cols=248 Identities=12% Similarity=0.103 Sum_probs=128.6
Q ss_pred cEEEEEECCCCCEEEEE-eCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE-eC--------
Q 001396 392 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD-------- 457 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~-~~-------- 457 (1086)
.+...++||||+++|.+ +.. ..++++|+++|+.+.. .+... ....++|.+|++. ++.+. ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44578899999999977 333 3699999999965432 11111 1223999999985 33333 22
Q ss_pred -CCcEEEEeCCCCcee--EEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCC-----ceeEEecCCCCc
Q 001396 458 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL-----GARVDYDAPGLG 525 (1086)
Q Consensus 458 -d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~-----~~~~~~~~~~~~ 525 (1086)
...|+.|.+.++..- ..+......+..+....+.|+++|+..+.. ..+.+.++... ..........+.
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 224788888777543 445544444322233335677777654433 34677777664 222233323333
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee---eeEEecccccCCceEEEEEecCCCEEEEE-ECCC--cEEEE
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIKIW 599 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg--~i~iw 599 (1086)
...+... +..++..+..+...+.|...++..... ...+..+. ....+..+. ..+.+|+.. ..++ .|+++
T Consensus 280 ~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 280 EYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVS--LFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEE--EETTEEEEEEEETTEEEEEEE
T ss_pred EEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEE--EECCEEEEEEEECCccEEEEE
Confidence 3333333 443443333444567888888887653 22343333 011344444 445555553 3443 58899
Q ss_pred EcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCCe
Q 001396 600 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 650 (1086)
Q Consensus 600 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~ 650 (1086)
++..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 9984555555544322 22344444455554433222 25677788887754
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.037 Score=64.28 Aligned_cols=291 Identities=10% Similarity=0.054 Sum_probs=158.4
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.++.|.-.|..+|+.+-+.....- ...... . .....-..+++ .+..++.++.++.+.-.|..+|+
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-----~~~~~~--~-~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLP-----DDVIPV--M-CCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCC-----cccccc--c-ccccccccceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 55667778999999999998765332100 000000 0 00000001222 23467778889999999999998
Q ss_pred ccccceEecccc--ccEeEEEecCCCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeecCCc----------------
Q 001396 424 DARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGA---------------- 480 (1086)
Q Consensus 424 ~~~~~~~~~~h~--~~v~~v~~s~d~~~l~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~---------------- 480 (1086)
.+-... ...+. ..+++--.--++. +++..+ .+|.|..+|.++|+.+..+..-..
T Consensus 142 ~~W~~~-~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 142 VVWSKK-NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred EEeecc-cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 654321 11111 1121111111343 333222 368999999999998866532111
Q ss_pred ---------------ceE-EEeecccCCccEEEEEEcC-----C-----------eEEEEEcCCCceeEEecCCCCce--
Q 001396 481 ---------------PVY-SLCPHAKENIHFIFSISVD-----G-----------KIKAWLYDSLGARVDYDAPGLGC-- 526 (1086)
Q Consensus 481 ---------------~v~-~~~~~~~~~~~~l~s~s~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~i-- 526 (1086)
.+. .+++ ++...+++.+..+ + .|.--|+++++.+..++...+.+
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~--D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD 296 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSY--DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD 296 (527)
T ss_pred ccCCCCCCccccCCCCccCceeE--cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc
Confidence 111 1122 3333455555422 2 56667888888877665543322
Q ss_pred -------EEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCeeeeE--------Eecc-cccC---------------
Q 001396 527 -------TRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRT--------YQGL-QLQH--------------- 572 (1086)
Q Consensus 527 -------~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~--------~~~~-~~~~--------------- 572 (1086)
.-+.+..+|+ .++.+.. ++.+++.|..+|+.+.. .... ....
T Consensus 297 ~d~~~~p~l~d~~~~G~~~~~v~~~~K----~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~ 372 (527)
T TIGR03075 297 YDGVNEMILFDLKKDGKPRKLLAHADR----NGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK 372 (527)
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEeCC----CceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence 1122234666 4445543 77899999999988622 1000 0000
Q ss_pred ---C-----------ceEEEEEecCCCEEEEEEC---------------------------------CCcEEEEEcCCCe
Q 001396 573 ---N-----------SVSVVHFDTAKDQILAAGD---------------------------------DHVIKIWDMNKVQ 605 (1086)
Q Consensus 573 ---~-----------~v~~~~~~~~~~~l~~~s~---------------------------------dg~i~iwd~~~~~ 605 (1086)
. .-..++++|+...++.... -|.|.-+|+.+|+
T Consensus 373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 0 0012556666655554322 2457888888988
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
..-..+.... ..... +.-.+.+++.++.+|.++.+|.++++.+...+.
T Consensus 453 ~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 453 IVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 8877654322 11222 222456777888899999999999998877653
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.012 Score=65.46 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=144.2
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCceeE
Q 001396 799 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI 873 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~~ 873 (1086)
-..+++++++..+.... ++.|.+.|..+.+......... ....+++++ +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45788899888666554 5889999988777776654332 667899999 6655555444 689999999999888
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--eC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 950 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d 950 (1086)
.....-..+ ..++++|+|+.+..+ ..++.|.+.|........ ...............++++|+|.++.+. .+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775543344 889999999965554 478899999977644221 1100011111245679999999987763 22
Q ss_pred --CeEEEEEcCCccceecccc-CCccCEEEEEEeCCCCEEEEEECC-CcEEEEEcCCCceeeeec
Q 001396 951 --THLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 951 --~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~s~~~D-g~v~vWd~~~~~~~~~~~ 1011 (1086)
+.+...|..++........ +.. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 5889999888877664222 212 55678999999998887444 889999999988876665
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0044 Score=69.21 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=87.8
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccccccee-eeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR-KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
+.--+++..+++++.|+..|.+++|+...+.....-.+-...+. .+.+ +++..+++.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v----------------------s~~e~lvAa 93 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV----------------------SSVEYLVAA 93 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe----------------------cchhHhhhh
Confidence 44556777899999999999999999887755433332222222 2233 466778888
Q ss_pred ccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccC
Q 001396 698 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 698 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
|+..|.|-++.+....+.....+.-.+..|...|+++.|++++..+.+|...|.|..-.++.
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 88888888888776555554444444455889999999999999999999999998877654
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.68 E-value=0.012 Score=65.97 Aligned_cols=225 Identities=12% Similarity=0.107 Sum_probs=111.0
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.+....-....+.++|+|++ +++ ..||.-.|+.....+... .+.-...+|++.
T Consensus 26 k~lg~~~~~p~~ls~npngr~-v~V-~g~geY~iyt~~~~r~k~------------------------~G~g~~~vw~~~ 79 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRF-VLV-CGDGEYEIYTALAWRNKA------------------------FGSGLSFVWSSR 79 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSE-EEE-EETTEEEEEETTTTEEEE------------------------EEE-SEEEE-TS
T ss_pred ccCCCCCcCCeeEEECCCCCE-EEE-EcCCEEEEEEccCCcccc------------------------cCceeEEEEecC
Confidence 334444446899999999996 444 445888888743332221 134456889985
Q ss_pred CCEEEEEeCCCEEEEE-EecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 402 GSLLGVAYSKHIVQLY-AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 402 g~~las~~~d~~i~iw-d~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
++ +|+-...++|.|+ +.+. +..+.. .+. ..+..+-. |. +|...+ ++.|.+||+++++.++++...
T Consensus 80 n~-yAv~~~~~~I~I~kn~~~-~~~k~i-~~~---~~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 80 NR-YAVLESSSTIKIYKNFKN-EVVKSI-KLP---FSVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp SE-EEEE-TTS-EEEEETTEE--TT------S---S-EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---
T ss_pred cc-EEEEECCCeEEEEEcCcc-ccceEE-cCC---cccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--
Confidence 55 6666668889996 4432 221211 111 12333322 66 455454 448999999999999998743
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCC----------c-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL----------G-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~----------~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
+|..+.|+ +++.+++..+.+ .+.+++.+.. + ...........|.+.+|..| .++..+. .
T Consensus 146 ~vk~V~Ws--~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~----~- 215 (443)
T PF04053_consen 146 AVKYVIWS--DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS----N- 215 (443)
T ss_dssp E-EEEEE---TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T----T-
T ss_pred CCcEEEEE--CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC----C-
Confidence 38888885 466788887755 5666654433 0 11222222557788888776 3333331 2
Q ss_pred eEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
.+.. +-.|+. ..+.... .++.-+.+.+..+.++....|+.+..+.+.
T Consensus 216 ~lkY--l~~Ge~-~~i~~ld---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 216 HLKY--LVNGET-GIIAHLD---KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE--EETTEE-EEEEE-S---S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEE--EEcCCc-ceEEEcC---CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 3443 222322 2222222 466667777766777777777777777664
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.63 E-value=0.0031 Score=73.39 Aligned_cols=186 Identities=10% Similarity=0.077 Sum_probs=106.1
Q ss_pred CCeeEEEeecCCCEEEEEe-------CC--eEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001396 797 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 859 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 859 (1086)
..+...++||||+.+|... +. .|.+++.. +.. ..+.. ....+.-.|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999988775 32 35555642 222 33322 22478899999 77777666432
Q ss_pred ----CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE---EECCCCceeeeeeeeccCCCccCCCC
Q 001396 860 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 860 ----g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1086)
+.+.+.++..++... ...+.|..+.|||||+.++... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2346799999999999988776 477777 444444422211112211111 23
Q ss_pred ceEEEEecCCCEEEEEeCCeEEEEEcCC-ccceeccccC--CccCEEEEEEeCCCCEEEEEECCCcE
Q 001396 933 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTL 996 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v 996 (1086)
+.++.|..++.+++...++...+|.+.- |..... ..+ ...++..++-+++ .|+....+|.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 5789999999976554444444454431 322221 122 2567777777763 34445556633
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.15 Score=56.86 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=162.7
Q ss_pred cEEEEEECCCCCEEEEEeCCC-EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 392 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
....++..|++..+....... .+.+-+... ..... ....-...-..++.++++.+ .++....++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 556788888886655543222 344444431 11111 11111133457888889886 45566667899999988877
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.......-. ....+++. ++++.+..+.. ++++.+.|-.+............+ ..++++|+|..++.... .
T Consensus 108 ~~~~~~vG~-~P~~~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVD--PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEEC--CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 776664332 44556664 45555555544 688888888887777764443334 88999999998887762 3
Q ss_pred ceeEEEEeCCCCeeeeEEecc--cccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 548 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
++.|.+.|..+....+ -... .........+.++|+++.++..... +.+...|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977665553 1100 1112345678899999987775433 68999999998877763222222 35679
Q ss_pred EEecCCCEEEEEECC-CcEEEEECCCCCeeeecc
Q 001396 623 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 655 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~ 655 (1086)
.++|+|+.+.+.... +.+.+-|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 888888888776555443
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.057 Score=60.60 Aligned_cols=230 Identities=12% Similarity=0.073 Sum_probs=111.5
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe-C
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A 466 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd-~ 466 (1086)
+.|.++.|+.+. .|++...||.++++|+...... .......-....+....+..+|- .++++ ++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 799999999865 4556669999999998743300 00001111222233334444553 34433 34444333 2
Q ss_pred CCCceeEEe---ecCCc------ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 467 VTGSRTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 467 ~~~~~~~~~---~~h~~------~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
......+.+ .+... ....+ .....+....+....++.+.+-+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211111111 11000 00000 01122333444445555555333222111 113468999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
++.... ++.+.+....-.+....+.... ......+.|.-+...++.- ...+.+.....
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~-------------- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPDG-------------- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------
Confidence 998875 5567777765555555555432 2455666666553222221 22333332111
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
..+.|.-++..++..-.|| ++|........++...
T Consensus 289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 2244444455444444455 7777655554444443
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.57 E-value=0.067 Score=57.07 Aligned_cols=231 Identities=11% Similarity=0.121 Sum_probs=131.7
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe----
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 475 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~---- 475 (1086)
..++.|+.|+.+| +.++++........ . .+...|..+...++-+ .++.-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999999 99999933222221 1 2333499999999888 444444 599999998754433311
Q ss_pred ----------ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-----ceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 476 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 476 ----------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
......+...+......+...+......+|.+|.+... .....+... ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11223344444112334445555566669999887663 222333333 577888888 566666
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccc---------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEE--E
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 609 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 609 (1086)
+. .....+.|+.++.....+..... ...++..+... ++.+|++- +..-.+.|. .|+... .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65 23488899987766554432210 01233333333 44566553 222233333 444333 2
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
+.-.. ....+++. ..+++..+. +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 22111 24556664 457776665 5599999999988877763
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.024 Score=56.36 Aligned_cols=232 Identities=15% Similarity=0.093 Sum_probs=138.3
Q ss_pred eEEEeecCCC-EEEEEe-CCe-EEEEEccCceEEEEEcCCCCC--eEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCC
Q 001396 800 PCFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARS 869 (1086)
Q Consensus 800 ~~l~~s~dg~-~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~ 869 (1086)
..++++|--. -++.+. -|+ ..++|..+.+.+.++....+. --.=.||| ||++|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 3577888644 344444 355 778999888777665433322 23347999 89988865433 6899999986
Q ss_pred c-eeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE--------------------EECCCCceeeeeeeeccCCCcc
Q 001396 870 S-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMT 928 (1086)
Q Consensus 870 ~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~i--------------------wd~~~~~~~~~~~~~~~~~~~~ 928 (1086)
+ +.+.++..|.-....+.+.+||+.|+.+. |-|.. .|-.+++......+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~-- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ-- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh--
Confidence 4 56778888888888999999999999764 22333 33223322221122111122
Q ss_pred CCCCceEEEEecCCCEEEEE------eCCeEEEEEcCCccceecccc------CCccCEEEEEEeCCCCEEEEEE-CCCc
Q 001396 929 LAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 995 (1086)
Q Consensus 929 ~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~s~~-~Dg~ 995 (1086)
-.+..++.-+||+.++.+ .|--..|=-...|+.+.-+.. .-...|-+++..-+..+++..+ .-+.
T Consensus 226 --lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 226 --LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred --cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 258899999999887763 111111111122222221110 1145677778776555555444 4556
Q ss_pred EEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 996 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 996 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
..+||..+|..+..-. ++.. ..++.. ..-|++.+.+|.++++.
T Consensus 304 ~vi~da~tG~vv~~a~----l~da--------aGva~~---~~gf~vssg~G~~~~~s 346 (366)
T COG3490 304 AVIWDAATGAVVSEAA----LPDA--------AGVAAA---KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEEcCCCcEEeccc----cccc--------ccceec---cCceEEecCCceEEecc
Confidence 8899999999884433 1111 112222 35678888899998874
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.53 E-value=0.075 Score=56.69 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=130.4
Q ss_pred CCceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEE
Q 001396 339 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 417 (1086)
Q Consensus 339 dg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 417 (1086)
.++. |+.|+.+| +.+++... ...... .+...|..+...|+-+.|++-+ |+.++++
T Consensus 6 ~~~~-L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGDR-LLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCCE-EEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 3554 78888888 89999832 222211 1223499999999888877775 4899999
Q ss_pred EecCCCccccceE-----------eccccccEeEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeecCC
Q 001396 418 AYHGGSDARQQLE-----------IDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 479 (1086)
Q Consensus 418 d~~~~~~~~~~~~-----------~~~h~~~v~~v~--~s~d~~~l~l~s~~~d~~i~iwd~~~~-----~~~~~~~~h~ 479 (1086)
++..-........ -......+...+ -...+.. .|+.+. .+.|.+|.+... +..+.+. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 9876543331100 011223344444 1123332 444444 558888876653 3455654 44
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC-----------ceEEEEEecCCCEEEEEeeCCCCc
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----------GCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
..+.+++|. +..++.|..++ ..+.|+.++.....+..... ....+.--+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------ 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------ 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence 778888885 23566666444 67788886655443322111 112222234456666532
Q ss_pred eeEEEEeCCCCeeee--EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 549 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
. +-++=-..|+..+ .+.- . ..+.++++. ..++++.+.+ .|.||++.++++++.+...
T Consensus 208 ~-~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 N-IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 1 3333233454444 2221 1 345556654 3578777664 5999999999999998754
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.036 Score=58.75 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=137.3
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
.-.|.|+...|+.+.-..+.|.-|+..+|+... | . +...+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~--------------~-~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV------F--------------P-SPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE------E--------------E-CCCCcccceeecCCCeEEEE-ccc
Confidence 345778888778887788999999998775432 1 1 22334555444455555555 333
Q ss_pred EEEEEEecCCCccccceEec-c-ccccEeEEEecCCCCcEEEEEEeC-----------CCcEEEEeCCCCceeEEeecCC
Q 001396 413 IVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD-----------DKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~l~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
+.+++.+++.......... + -..+.+.+...|+|. +.++... -|.++..|. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 6777876655422211111 1 124567889999998 3333222 122444443 566666666666
Q ss_pred cceEEEeecccCCccEEEEE-EcCCeEEEEEcCC-----Cc--eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 480 APVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~-----~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
..-+.++|+| |++.++.+ +..+.|..|++.. .. .........+..-.++...+|.+-+++... .+.|
T Consensus 163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 6678899965 55555555 5568888888763 11 122333344566778888899887644321 2369
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEEC
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 592 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 592 (1086)
..|+.+ |+.+..+.... ..+.+++|. ++.+.|++.+.
T Consensus 238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEec
Confidence 999988 99999988875 567777775 45566655543
No 370
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.42 E-value=5.5e-05 Score=82.40 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=131.6
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee--EEecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
.+.+++.....+...++.|..+|.|-+-.++..... .....+...+++++|++ |.+.||+|-.....+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 445555544445567888899999998877654433 34455666899999988 667777776555567889999998
Q ss_pred CC--eeeeE--EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEec-CCCEE
Q 001396 558 EG--AIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLL 631 (1086)
Q Consensus 558 ~~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 631 (1086)
++ .+... |.+. ......+++|-.+.+.+++|.....+.++|++. ......+. +..+..+.++| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 77 22221 2221 124566889999999999999999999999873 22222221 22356788888 77787
Q ss_pred EEEECCCcEEEEECC-CC-Ceeeecccccc----ceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 632 AVIANENRIKILETP-ES-NSVDAAGVLSD----NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~-~~-~~~~~~~~~~~----~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
++-. ||.|.+||.. .- .++..+....+ .+..+++.|... |...+..-..++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7665 8999999942 21 23333332222 377788887532 33334444456788
Q ss_pred eeeee
Q 001396 706 VEKPL 710 (1086)
Q Consensus 706 vw~~~ 710 (1086)
++++.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88754
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.41 E-value=6.1e-05 Score=82.06 Aligned_cols=204 Identities=12% Similarity=0.174 Sum_probs=128.2
Q ss_pred CCCceEeeecCCCc-eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCCEE
Q 001396 328 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 405 (1086)
Q Consensus 328 ~~~V~~~~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 405 (1086)
...+.|+++.-+.+ -++++|..+|.|.+-.+....-- ...+..+|....+++||++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44788888766543 58999999999999877543211 0112557888999999998 66778
Q ss_pred EEEe----CCCEEEEEEecCCCc-cccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecC
Q 001396 406 GVAY----SKHIVQLYAYHGGSD-ARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 478 (1086)
Q Consensus 406 as~~----~d~~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h 478 (1086)
|+|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|.....+.++|++... ....+ .
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--n 194 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--N 194 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence 8773 456799999998721 111111222 344566899998877 78889888899999976321 11111 2
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEE-cCCCceeEEecC-----CCCceEEEEEecCCC-EEEEEeeCCCCceeE
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVDYDA-----PGLGCTRMAYSANGR-RLFSCGTSKEGESFL 551 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~-----~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i 551 (1086)
+..+..+.+.|- .+.++++-. ||.|.+|| ...-+....... ....+..++|.|-.. .++++..+ .++|
T Consensus 195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SITI 269 (783)
T ss_pred hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cceE
Confidence 223444455442 233665555 99999999 433332221111 122588899999544 34444432 5678
Q ss_pred EEEeCC
Q 001396 552 VEWNES 557 (1086)
Q Consensus 552 ~iwd~~ 557 (1086)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999875
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.075 Score=56.43 Aligned_cols=215 Identities=11% Similarity=0.035 Sum_probs=127.6
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
-.|.++... ++.+--..+.|.-||..+|+. ..+. +.+.+.++... + .+..|+++... +.+++.+.+..+..+.
T Consensus 30 P~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~-d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGA-LLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALI-D-AGGRLIACEHG--VRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCE-EEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceee-c-CCCeEEEEccc--cEEEeccCCceeEEec
Confidence 356677765 455555678899999876653 2332 22223333321 2 22344444332 4445555444422221
Q ss_pred -C----CCCceEEEEEecCCCEEEEEee-----CC--CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEE
Q 001396 521 -A----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 588 (1086)
Q Consensus 521 -~----~~~~i~~~~~s~d~~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 588 (1086)
. .....+.+...|+|.+-+.... .. ...+.|+.+|. .+..++.+..+- ..-+.++||||++.++
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly 178 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEE
Confidence 1 1234567888899988776544 11 22345666665 466666666544 5678999999998888
Q ss_pred EEEC-CCcEEEEEcCC--Cee---EEEEcCCCCCCCCceEEEecCCCEEEEEECCC-cEEEEECCCCCeeeeccccccce
Q 001396 589 AAGD-DHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNL 661 (1086)
Q Consensus 589 ~~s~-dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~v 661 (1086)
.+.. .+.|..|++.. +.. .............-.++...+|.+.+++..+| .|..|+.. ++.+..+..+...+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 7654 47788887752 211 11111111122346788888998886555554 89999988 88888888776777
Q ss_pred eeeEEc
Q 001396 662 RKLSVN 667 (1086)
Q Consensus 662 ~~~~~~ 667 (1086)
.+++|.
T Consensus 258 t~~~Fg 263 (307)
T COG3386 258 TNPAFG 263 (307)
T ss_pred ccceEe
Confidence 777775
No 373
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.26 E-value=0.82 Score=55.23 Aligned_cols=206 Identities=13% Similarity=0.142 Sum_probs=121.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcc--------eEEEeeccc--------------CCccEEEEEEcCCeEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 508 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~~~~--------------~~~~~l~s~s~dg~i~vw 508 (1086)
.++.++.++.|.-.|.++|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666677788888888888888776432211 112222211 133478889999999999
Q ss_pred EcCCCceeEEecCCCC------------ceEEEEEec--CCCEEEEEeeCCC------CceeEEEEeCCCCeeeeEEecc
Q 001396 509 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 509 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
|.++++....+..... ....+.-.| .+..++.++...+ ..+.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9999888866533211 000111112 2334555543222 2678999999999988776531
Q ss_pred ccc--------------CCce-EEEEEecCCCEEEEEE------------------CCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 569 QLQ--------------HNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 569 ~~~--------------~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
... ...+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 100 0011 2345555555554422 235577788889988877754211
Q ss_pred C-------CCCceEEEec-CCC---EEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 616 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 616 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+...+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 0 0111222333 553 789999999999999999988776543
No 374
>PRK10115 protease 2; Provisional
Probab=97.23 E-value=0.42 Score=57.67 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=124.4
Q ss_pred ccEEEEEECCCCCEEEEEeCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----Cc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 460 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~ 460 (1086)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 456678999999999987432 3699999998864322 1222 1 1459999999863 3333222 36
Q ss_pred EEEEeCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCC--CceeEEecCCCCceEEEEEec
Q 001396 461 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 461 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~ 533 (1086)
|+.+++.++ +....+........ +....+.++.+++..+. ++.+.+++... ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888898888 33344443333333 22222445565554433 35688888532 332222322322222222 2
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEc
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 611 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~ 611 (1086)
.+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444323334556666665 2332 2333331 124677777773 34555566677655554432 22334333
Q ss_pred CCCCCCCCceEEEe--cCCC-EEEEEEC---CCcEEEEECCCC
Q 001396 612 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 648 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 648 (1086)
.... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112222333 3333 3333332 366777777665
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.19 E-value=0.14 Score=56.01 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=104.5
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE---EEEECCC----CCEEEEEeC---------C-CE
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---RVVWSPD----GSLLGVAYS---------K-HI 413 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---~l~~spd----g~~las~~~---------d-~~ 413 (1086)
..|+|.|..+.+.+....++ . ...|. .+.|..+ ..+|++|+. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~-----------------~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE-----------------P-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE-----------------T-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC-----------------C-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 45888888888877654433 2 23333 4444443 578888743 2 88
Q ss_pred EEEEEecCC----CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEee-cCCcceEEEee
Q 001396 414 VQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCP 487 (1086)
Q Consensus 414 i~iwd~~~~----~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~ 487 (1086)
|.++++... ..++.... ....++|++++-- .+ .++.+. .+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 22332222 2457889988876 33 344333 5789999998887 332221 12235566654
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCce-eE--EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
. +.+++.|.....+.++.++.... .. ........++++.|-++++.++.+.. ++.+.++...
T Consensus 138 ~----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 138 F----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp E----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred c----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 2 34899999988888886655333 22 22334557889999877776666543 5567766554
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.024 Score=66.95 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=101.2
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCC-------CEEEEEeCCCcEEEEECCCCceeeeee
Q 001396 849 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 849 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg-------~~l~s~s~dg~i~iwd~~~~~~~~~~~ 919 (1086)
+..+|..- .....|+-.|+..|+.+..+..|... |.. +.|+. .--+.|-.+..+..||..-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 45555543 34578999999999999999987754 544 44432 223445567779999987532 112
Q ss_pred eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEE
Q 001396 920 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 999 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vW 999 (1086)
+.............+|++-+.+|...+.+.+|.|++||- .|..-.+.+++-..+|..|+.+.||++|++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 211111111223578888888888777789999999994 45556666777789999999999999988665 5678888
Q ss_pred EcC
Q 001396 1000 EAS 1002 (1086)
Q Consensus 1000 d~~ 1002 (1086)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.05 E-value=0.11 Score=57.12 Aligned_cols=83 Identities=12% Similarity=0.261 Sum_probs=58.1
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC-----------------CE-
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ- 586 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~- 586 (1086)
.+.+++.+|++++.++. |.-|+|.++|+.++..++.++|.. +..+.-+.....+ .+
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEE
Confidence 57789999998877764 337789999999999999998876 2222222111111 12
Q ss_pred EEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 587 ILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 587 l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
++-+-.-|.|.||++++|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 233677899999999999888877643
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.05 E-value=0.7 Score=54.29 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=117.9
Q ss_pred EEEEEecc------CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC-C---
Q 001396 343 LLLVGTNV------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-H--- 412 (1086)
Q Consensus 343 lla~gs~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~--- 412 (1086)
|++.|+.+ ..+..+|..+++-..... +. +...-.++++. +|...++|+.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 55555554 357788887764332211 11 11223334443 45777888888 3
Q ss_pred --EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC-----cEEEEeCCCCcee--EEeecCCcceE
Q 001396 413 --IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-----TIKVWDAVTGSRT--YSFEGHGAPVY 483 (1086)
Q Consensus 413 --~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~-----~i~iwd~~~~~~~--~~~~~h~~~v~ 483 (1086)
++..||..+++-.. ...+...........+ +|. +.|.||.|| ++..||..+.+-- ..+........
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 68889988876322 2222222222222222 556 788888886 4778887765432 11211111122
Q ss_pred EEeecccCCccEEEEEEcCC------eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC-CCceeEEEEeC
Q 001396 484 SLCPHAKENIHFIFSISVDG------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNE 556 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~ 556 (1086)
.+.+ +|.+.++||.++ .+..||..+..=...-.....+...-.-.-++...+.||.++ .....|..||.
T Consensus 423 v~~~----~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVL----GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEE----CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 2222 667778887665 456676665543332222222211123334666666666543 12344788998
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeE
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLL 607 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~ 607 (1086)
.+.+....- ........+..+. -++...++|+.|| +|..||..+.+-.
T Consensus 499 ~~~~W~~v~-~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 499 ETNQWTMVA-PMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CCCceeEcc-cCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 887665442 1110112222222 2345556677665 4667777665543
No 379
>PRK10115 protease 2; Provisional
Probab=97.05 E-value=1 Score=54.53 Aligned_cols=244 Identities=9% Similarity=0.014 Sum_probs=122.0
Q ss_pred CceEeeecCCCceEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+..+.+||||++|+.+.+.+| .|++-|+.+|+.+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777899999996555444433 488999988864422 0 111 11469999999988
Q ss_pred EEEeCC------CEEEEEEecCCCccccceEeccccccEe-EEEecCCCCcEEEEEEe-CCCcEEEEeCC--CCceeEEe
Q 001396 406 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 475 (1086)
Q Consensus 406 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~s~d~~~l~l~s~~-~d~~i~iwd~~--~~~~~~~~ 475 (1086)
+....+ ..|+.+++.++..-... .+........ .+..+.|++.+++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 36888888887321111 2333223333 33445588853322222 34578888843 34432222
Q ss_pred ecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCC-CceeEEecC-CCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~-~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
....+....+. + . ++.+++.... .. .|...++.. .+-...+.. ....+..+.+. ++.|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 22222222222 1 1 2223332222 12 343344442 222223333 23367777776 445554443 234666
Q ss_pred EEEEeCCCCeeeeEEe-cccccCCceEEEEEe--cCCC-EEEEEE---CCCcEEEEEcCCCe
Q 001396 551 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 605 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 605 (1086)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7888865443 33332 111 223333344 3444 333332 45678888887765
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0027 Score=69.84 Aligned_cols=94 Identities=21% Similarity=0.420 Sum_probs=72.4
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE-EEEECCCCCEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV 407 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~las 407 (1086)
..|..+.|+|.-. |+|.+..+|.|.+..++ -+.+ |+ +.-|+..++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEE
Confidence 3788999999987 79999999999998887 4433 33 333556666 9999999999999
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecC
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 445 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 445 (1086)
|-.||+|++-|+++|..+... ...-...|.++-|++
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998765431 123345677777763
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.01 E-value=0.24 Score=54.57 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=57.2
Q ss_pred CCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEE-EEEcCCC----------------CC-EEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI 855 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las 855 (1086)
....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4456889999999998888764 99999999999888887765543211 1111101 11 3344
Q ss_pred EeCCCeEEEEEcCCceeEEEec
Q 001396 856 GMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 856 g~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887766554
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.94 E-value=0.0021 Score=43.79 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.7
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
++.+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.94 E-value=0.69 Score=48.86 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=83.3
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 001396 834 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 834 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
......+..+..++ |+++++++.......-||--...-...-..-..+|.+|.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34457788899998 89999988655555677754322222222345789999999998876654 88888877722211
Q ss_pred eeeeee--eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecccc--CCccCEEEEEEeCCCCEEEE
Q 001396 914 IQTCRS--LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 914 ~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s 989 (1086)
..... ....... -.+..++|.+++...|++..|.+. .....|+.-..-.. .-......+.|..+.+-++
T Consensus 219 -~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~- 291 (302)
T PF14870_consen 219 -ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV- 291 (302)
T ss_dssp -EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-
T ss_pred -cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-
Confidence 11111 1111111 247899999999999988888554 45555654443222 2256788999987765555
Q ss_pred EECCCcEEEE
Q 001396 990 SFVDGTLSIH 999 (1086)
Q Consensus 990 ~~~Dg~v~vW 999 (1086)
.+.+|.+.=|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 4578887654
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.88 E-value=0.31 Score=50.70 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=111.4
Q ss_pred CeEEEEEcCCCCCEEEEEe-CC--CeEEEEEcCCceeEEE-eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE-CCCCc
Q 001396 839 TATSLAFNPHDNNVIAIGM-DD--STILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 913 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~-~d--g~v~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd-~~~~~ 913 (1086)
.+.+.++++ +++.+|... .+ ..++++... ..... +.+. .++...|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 677666554 23 355555433 33222 2333 688889999988887777677777774 22322
Q ss_pred eeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe----CCeEEEEEcC---Cc--cce---eccccCCccCEEEEEEe
Q 001396 914 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 981 (1086)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~l~fs 981 (1086)
... ..+...... +.|+.+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 111 112221111 1599999999999999832 5677776543 23 111 01111225688999999
Q ss_pred CCCCEEEEEECCCc-EEE-EEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 982 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 982 ~dg~~l~s~~~Dg~-v~v-Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
+++.+++.+...+. +.. .....+... .+ +.. .......++.-++ .. +.+.+++.+.- ...+.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~ 238 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA 238 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCccc-cc------CCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence 99988776655443 333 333322211 11 111 2223334455444 33 44555555543 55666
Q ss_pred CCCCCC
Q 001396 1060 TWAVLP 1065 (1086)
Q Consensus 1060 ~~~~~~ 1065 (1086)
.|...+
T Consensus 239 ~W~~v~ 244 (253)
T PF10647_consen 239 SWREVP 244 (253)
T ss_pred cceEcc
Confidence 776554
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.84 E-value=0.14 Score=53.40 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=91.9
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-cCCceeE
Q 001396 797 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 873 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~ 873 (1086)
..+...++|+|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888876 5544444444333333332 334788889999 687877777677777774 3333322
Q ss_pred -EEec--cccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCCCceeee----eeeeccCCCccCCCCceEEEEecCCC
Q 001396 874 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQTC----RSLQTPDGVMTLAPSETHIQFHKDQT 943 (1086)
Q Consensus 874 -~~l~--~h~~~v~~l~~spdg~~l~s~s---~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~dg~ 943 (1086)
..+. .-.+.|+.+.+||||..+|... .++.|.|=-+........ ..+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1121 1122899999999999988765 357777776653322211 111211111 13689999999999
Q ss_pred EEEEE
Q 001396 944 RFLLV 948 (1086)
Q Consensus 944 ~l~~~ 948 (1086)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 386
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0051 Score=67.80 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 915 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~-~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~ 915 (1086)
...+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34677899999 88999999999999999998 788889887887888 9999999999999999999999999987643
Q ss_pred eeeeeeccCCCccCCCCceEEEEe
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
.... .. ....|..+-|+
T Consensus 98 ~~~~----~s---~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFL----FS---VETDISKGIWD 114 (665)
T ss_pred eccc----cc---cccchheeecc
Confidence 3211 11 11256777776
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.029 Score=60.75 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=97.7
Q ss_pred CCCEEE-EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEE-----EEEeCCCcEEEEeCCC-Cc-ee
Q 001396 401 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVT-GS-RT 472 (1086)
Q Consensus 401 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l-----~s~~~d~~i~iwd~~~-~~-~~ 472 (1086)
+..+|. ++.....++=.|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|..|.-||.+- +. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 34444568888999998766 4555555 888888888652111 2355688999999873 22 22
Q ss_pred EEeecCC----cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
...++|+ ....|.+- ..+| ++++||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2333332 23444443 4444 899999999999999754455557778888999999999999998766 5
Q ss_pred eeEEEEeCC
Q 001396 549 SFLVEWNES 557 (1086)
Q Consensus 549 ~~i~iwd~~ 557 (1086)
.++.+.++.
T Consensus 492 tyLlLi~t~ 500 (644)
T KOG2395|consen 492 TYLLLIDTL 500 (644)
T ss_pred cEEEEEEEe
Confidence 567776643
No 388
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.76 E-value=0.11 Score=56.76 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=107.0
Q ss_pred cEEEEeCCCCceeEEeec-CCcceEEEeecccC-----CccEEEEEEc----------CCeEEEEEcCCC-----ceeE-
Q 001396 460 TIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKE-----NIHFIFSISV----------DGKIKAWLYDSL-----GARV- 517 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~-----~~~~l~s~s~----------dg~i~vwd~~~~-----~~~~- 517 (1086)
.|++.|..+.+.+.++.- ....+.+++...-. ...+++.|+. .|.|.++++... +...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578888888877765533 23345555433222 2467777754 289999999884 2111
Q ss_pred EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEecCCCEEEEEECCCcE
Q 001396 518 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 596 (1086)
Q Consensus 518 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 596 (1086)
......++|++++-- +++ ++++. ...|++|++...+ ....-..+. ...+.++.. .++++++|.....+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~--~~~i~sl~~--~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDS--PFYITSLSV--FKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-B--SSSEEEEEE--ETTEEEEEESSSSE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecc--eEEEEEEec--cccEEEEEEcccCE
Confidence 112335678888765 444 44444 3468899988777 443333322 134445444 46699999988888
Q ss_pred EEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 597 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 597 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.++..+. +..+..+........+.++.|-++++.++++..+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8875543 3334344333223457788888666799999999999999876
No 389
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.70 E-value=0.0033 Score=42.79 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=33.0
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEe
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 357 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd 357 (1086)
.+...+..|...|+++.|+|++. ++++|+.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 34566778999999999999997 689999999999996
No 390
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.69 E-value=0.037 Score=65.44 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=99.3
Q ss_pred CCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc-eEEEeeccc---CCccEEEEEEcCCeEEEEEcCCCceeEEe-c-
Q 001396 447 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D- 520 (1086)
Q Consensus 447 ~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~- 520 (1086)
.+.++|........|+-.|+++|+.+..+..|... |..++-... -+..-.+.|-.+..+..||.+-....... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34445555566788999999999999999888755 666653211 01235677888889999999875532211 1
Q ss_pred ---CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 ---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.......|++-+.+|. ||+|+. +|.|++||--..+....+.+.. .+|..+..+.||++|++.+. ..+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence 1233577777777774 556654 6669999954444444455555 89999999999999988775 4566
Q ss_pred EEEc
Q 001396 598 IWDM 601 (1086)
Q Consensus 598 iwd~ 601 (1086)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6654
No 391
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.61 E-value=1.5 Score=47.87 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=39.7
Q ss_pred CceEEEEEec-------CCCEEEEEECCCcEEEEEcCCCeeEE-EEcCCCCC-CCCceEEEecCCCEEEEEECCCcEE
Q 001396 573 NSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLT-TIDAGGGL-PENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 573 ~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
..+..+.|.. .+.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3555666653 34455555556778888877553332 22211222 2578999999999888887788764
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.60 E-value=0.99 Score=49.24 Aligned_cols=240 Identities=12% Similarity=0.131 Sum_probs=120.8
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEEccCceE---EEEEc----CCCCCeEEEEEcCC---CCCEEEEEeCC--------C
Q 001396 799 VPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTIM----PPSPTATSLAFNPH---DNNVIAIGMDD--------S 860 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---d~~~lasg~~d--------g 860 (1086)
...|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 4689999999998877789999999 44443 33331 23356799999992 24444433321 2
Q ss_pred eEEEEEcCCc-------e-eEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCc-----------EEEEECCC-Cceeee
Q 001396 861 TILIYNARSS-------E-VISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQTC 917 (1086)
Q Consensus 861 ~v~iwd~~~~-------~-~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~-----------i~iwd~~~-~~~~~~ 917 (1086)
.|.-|....+ + .+..+.. ....-..|+|.|||.+.++.+..+. =+|+.+.. +.....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~d 162 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPAD 162 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCC
Confidence 4444444333 1 1122222 1223466999999988888776543 01122111 000000
Q ss_pred eee--------e-ccCCCccCCCCceEEEEecC-CCEEEE--EeCCeEEEEEcCCccc----------------e-----
Q 001396 918 RSL--------Q-TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L----- 964 (1086)
Q Consensus 918 ~~~--------~-~~~~~~~~~~~v~~~~~s~d-g~~l~~--~~d~~i~vwd~~~~~~----------------~----- 964 (1086)
... . ...|+ .....++|.|. |.+.++ +.++.=.|..+..|.- .
T Consensus 163 nP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp STTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 000 0 00001 12467999999 777776 4443322222222210 0
Q ss_pred ------eccccCCccCEEEEEEeC-------CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEE
Q 001396 965 ------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1031 (1086)
Q Consensus 965 ------~~~~~~h~~~v~~l~fs~-------dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1086)
..+.-.+...+..+.|-. .|.++++.-..+.|....++.+..+...... . .....++..++
T Consensus 239 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~----~~~~~r~~~v~ 312 (331)
T PF07995_consen 239 CPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L----GGFGGRPRDVA 312 (331)
T ss_dssp -TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C----TTSSS-EEEEE
T ss_pred CCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c----ccCCCCceEEE
Confidence 000011345667777753 4556766655667888787755333222211 1 12223577899
Q ss_pred ECCCCCCEEEEEeCCCcEE
Q 001396 1032 AHPLKPTQFAVGLTNGEVY 1050 (1086)
Q Consensus 1032 ~~p~~~~~l~~~~~dg~v~ 1050 (1086)
+.| ||.++++.+.+|.|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 788888888899875
No 393
>PHA02713 hypothetical protein; Provisional
Probab=96.57 E-value=0.11 Score=61.20 Aligned_cols=203 Identities=7% Similarity=-0.029 Sum_probs=101.5
Q ss_pred CCCcEEEEEEeCC------CcEEEEeCCCCcee--EEeecCCcceEEEeecccCCccEEEEEEcCC-----eEEEEEcCC
Q 001396 446 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 512 (1086)
Q Consensus 446 d~~~l~l~s~~~d------~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~ 512 (1086)
++. +++.||.+ ..+..||..+..-. ..+.........+.+ ++...+.||.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 56666643 34778887776432 111111111112222 556777777654 477888765
Q ss_pred CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-------------------ceeEEEEeCCCCeeeeEEecccccCC
Q 001396 513 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 573 (1086)
Q Consensus 513 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 573 (1086)
.+=...-..+.......+..-+|+..+.||.++.. ...+..||+.+.+....-.-.. .
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 43222111111111111223467777777643210 2458889988776543222111 1
Q ss_pred ceEEEEEecCCCEEEEEECC------CcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--cEEEEE
Q 001396 574 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 644 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~ 644 (1086)
........-+++..+.|+.+ ..+..||..+ .+-...............++ -+|++.++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11111122245555556543 2467899887 55443332222221222222 2688888998888 778888
Q ss_pred CCCCCeeeecccccc
Q 001396 645 TPESNSVDAAGVLSD 659 (1086)
Q Consensus 645 ~~~~~~~~~~~~~~~ 659 (1086)
..+.+.......|.+
T Consensus 532 ~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 532 VYTYEWNHICHQHSN 546 (557)
T ss_pred cccccccchhhhcCC
Confidence 887766555444443
No 394
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.56 E-value=1.8 Score=48.12 Aligned_cols=275 Identities=13% Similarity=0.104 Sum_probs=149.4
Q ss_pred CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec-----CCCEEEE
Q 001396 739 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 813 (1086)
Q Consensus 739 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~l~~ 813 (1086)
+...|++|+..|.++||+-..+..... ..+.... -..+|..++.-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence 345688899999999997533322111 1122221 234555555332 4456777
Q ss_pred EeCCeEEEEEccC--ce-------EEEEEcCCC--CCeEEEEEcCCC----CCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001396 814 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPHD----NNVIAIGMDDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 814 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~d----~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
-.-.++.||.+.. |. .+.....|. .....++.-|.+ ..+|.+-+-||.+.+|+-+.......+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6778888887731 11 122222232 223333333322 46888999999999999876555555554
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee---------------------eeeeeeccCCCccCCCCceEEE
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ 937 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~~~ 937 (1086)
.--...+++++.-..+++++.+..|.-|....-... ..+.+...+... .|..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEE
Confidence 222344788888889999999988888875321000 001111111111 234444
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEE-EEeC----CCC---EEEEEECCCcEEEEEcCCCceeee
Q 001396 938 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1009 (1086)
Q Consensus 938 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg~---~l~s~~~Dg~v~vWd~~~~~~~~~ 1009 (1086)
++.....+++-.+.++.+.+.. |.......- .....++ .|.. ++. .++.++.++++.||.=.+....+.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~ 325 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ 325 (418)
T ss_pred cCCCCceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence 4445555666566677777653 443322111 1122222 1221 222 477788999999998665555544
Q ss_pred eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1010 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
+. ..++. +.++.-+.-...|++-+++|.|.+-=+
T Consensus 326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEe
Confidence 42 11222 223322223578999999999988544
No 395
>PHA02713 hypothetical protein; Provisional
Probab=96.54 E-value=0.16 Score=59.78 Aligned_cols=227 Identities=11% Similarity=0.005 Sum_probs=117.2
Q ss_pred eEEEEEccCceEE--EEEcCCCCCeEEEEEcCCCCCEEEEEeCC------CeEEEEEcCCcee--EEEeccccCCeEEEE
Q 001396 818 VISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLV 887 (1086)
Q Consensus 818 ~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~v~~l~ 887 (1086)
.+..||..+.+-. ..+..... -.+++.. ++.++++|+.+ ..+..||..+.+- +..+....... .+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence 4567777655422 22221111 1223332 67788888754 3577888877642 22222111112 22
Q ss_pred EeCCCCEEEEEeCCC-----cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe-C-----------
Q 001396 888 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E----------- 950 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----------- 950 (1086)
..-+|+..+.||.++ .+..||..+.+-.. +....... ....+..-+|+..+.|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r-----~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIAL-----SSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccc-----ccccEEEECCEEEEEeCCCccccccccccc
Confidence 233778888888764 47889988754222 22211111 11112234666666642 2
Q ss_pred ------------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC------cEEEEEcCC-Cceeeeec
Q 001396 951 ------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRIL 1011 (1086)
Q Consensus 951 ------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg------~v~vWd~~~-~~~~~~~~ 1011 (1086)
..+..||..+.+.... ..-...+...-+..-+|+..+.||.++ .|..||..+ .+....-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~- 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT- 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-
Confidence 2477888877654321 111111222222344677777777642 467788887 4443111
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCC--cEEEEccCCCCCCCCCCCcccccC
Q 001396 1012 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG--EVYVIEPNEPGDTWAVLPPDEIVG 1071 (1086)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg--~v~vw~~~~~~~~~~~~~p~~~~~ 1071 (1086)
.++.. .....++.. ++...++||.+| ++..+|+.. .+|...+|.-.+.
T Consensus 498 ---~m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~--~~W~~~~~~~~~~ 547 (557)
T PHA02713 498 ---TTESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYT--YEWNHICHQHSNS 547 (557)
T ss_pred ---ccCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccc--ccccchhhhcCCc
Confidence 11111 111223333 578999999999 677777744 5698877765443
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.50 E-value=0.25 Score=57.97 Aligned_cols=236 Identities=11% Similarity=0.012 Sum_probs=124.7
Q ss_pred CCCEEEEEeCC------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC------CcEEEEeCCC
Q 001396 401 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 468 (1086)
Q Consensus 401 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d------~~i~iwd~~~ 468 (1086)
.+.+++.|+.+ ..+..+|..+++-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45556666655 358888888764222 11222 222233445543 34 78888888 3577888877
Q ss_pred CceeE--EeecCCcceEEEeecccCCccEEEEEEcCCe-----EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 469 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 469 ~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
++-.. .+...........+ +|.+.++|+.||. +-.||..+.+=...-.........-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76332 12111111111111 6678889998875 5666665543322222222222222334567777777
Q ss_pred eeCCCCc--eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCc-----EEEEEcCCCeeEEEEcCCC
Q 001396 542 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 542 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~ 614 (1086)
|.++..+ ..+..||..++.....-.-.. ...... ++ .-++...+.||.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7555432 678999998876543332222 001111 22 234556666776653 7889988877665532222
Q ss_pred CCCCCceEEEecCCCEEEEEECCC-----cEEEEECCCCCe
Q 001396 615 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNS 650 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~ 650 (1086)
....+.. ..-++...++|+.|| +|..||..+++.
T Consensus 512 ~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 512 PRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ccccccE--EEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 2111111 222467778887765 466666665533
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.48 E-value=1.2 Score=45.40 Aligned_cols=184 Identities=10% Similarity=0.124 Sum_probs=112.8
Q ss_pred eeEEEeecCCCEEEEEe-C--CeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001396 799 VPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 874 (1086)
...+.|..+|.++-+.+ - ..|+.+|+.+++......-.. ----.++.. ++++..-.-.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45788888888877776 2 469999999998876654332 223455555 45666677788999999999999988
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeE
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 953 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i 953 (1086)
++. ..+.=+.++ .|++.|+.......|.++|..+-+......+... +... ..+..+.+- +|...|=. ....|
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv--~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPV--SNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE-----EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEEC--CCcEeEEEE-cCEEEEEeCCCCeE
Confidence 886 345567777 4677777666667799999877554332222221 1111 245556665 55544433 56678
Q ss_pred EEEEcCCccceeccc-----c------CC---ccCEEEEEEeCCCCEEEEEE
Q 001396 954 AIYEAEELTCLKQWF-----P------IS---SVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~-----~------~h---~~~v~~l~fs~dg~~l~s~~ 991 (1086)
...|..+|+....+- . .+ ..-...+++.|.+..|...|
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888888888765421 0 01 34578899988776555544
No 398
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.44 E-value=0.13 Score=44.12 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=64.3
Q ss_pred ceEeee---cCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 331 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 331 V~~~~~---spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
|+++++ ..||+.-|++||.|..|+||+-. +.+.+. .-.+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--------------------~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--------------------TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--------------------ecccceEEEEEcCC-CEEEE
Confidence 445554 45666679999999999999843 444321 13467888887766 67889
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEe---cCCCCcEEEEEEeCCCcEE
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF---SAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~---s~d~~~l~l~s~~~d~~i~ 462 (1086)
+..+|+|-+|+-... .. ..+. +..+.++++ ..||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lW----RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LW----RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-ee----eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999875331 11 1222 222555544 334443 577787777664
No 399
>PRK13684 Ycf48-like protein; Provisional
Probab=96.42 E-value=1.9 Score=47.02 Aligned_cols=157 Identities=10% Similarity=-0.011 Sum_probs=88.2
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcC
Q 001396 880 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 959 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 959 (1086)
.+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+..... ..+..+++.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 456889999999876655 45564432 211111 11222222111 35889999999999888877766532344
Q ss_pred CccceeccccC---CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 960 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 960 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
.|........+ ....+..+.|.+++..++ ++.+|.|. ...+.|+--.........+ .....+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~-------~~~~~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVP-------SNFYKIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCC-------cceEEEEEeC--
Confidence 55443321111 134578899999887665 55677665 4555554332221101111 1123455553
Q ss_pred CCEEEEEeCCCcEEEEccC
Q 001396 1037 PTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1037 ~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++.....+..|.|..|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3556778889999888653
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.07 Score=57.91 Aligned_cols=146 Identities=9% Similarity=0.101 Sum_probs=101.4
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCE--E-----EEEeCCCcEEEEECCCCceeeeeeeeccC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~--l-----~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
++.++.....++-.|+..|+.+..+.-|.. |.-+.+.|+.+. | +.|=.|..|.-||..-.........+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566667899999999999999997777 888888887632 1 22445677888987643221111111111
Q ss_pred CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 925 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 925 ~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
-.. .....|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus 427 y~~--k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YST--KNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccc--ccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 111 12355666666776666689999999998 6777777788889999999999999998855 46677777654
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.054 Score=63.87 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
-+..+|.|+..|.+-..|+.+. ++....-..-.++|++++|+.||+ .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888988898888888764 222111123457999999999999 888999999999999999999999998988
Q ss_pred ceEEEeecc-cCCccEEEEEEcCCeEEEEEc
Q 001396 481 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 510 (1086)
Q Consensus 481 ~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~ 510 (1086)
+.+++-++. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887776442 334446777777776 5544
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=1.5 Score=44.82 Aligned_cols=176 Identities=13% Similarity=0.177 Sum_probs=109.6
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001396 834 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 834 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 912 (1086)
.+....+.++.|+| +.+.|++......-.|+=-.+|+.+.++.- .-...-.+.+.-+|++.++--.++.+.++.++.+
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44455699999999 677777777677666776667888877652 1223456888889999888888999999988765
Q ss_pred cee-eeeeeeccCCCccC-CCCceEEEEecCCCEEEEEeC-CeEEEEEcCCccc-e-eccccCC-------ccCEEEEEE
Q 001396 913 GIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHE-THLAIYEAEELTC-L-KQWFPIS-------SVPISQATF 980 (1086)
Q Consensus 913 ~~~-~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~d-~~i~vwd~~~~~~-~-~~~~~~h-------~~~v~~l~f 980 (1086)
... .....+..-+.... ......+||+|..+.|.+..+ +-+.||.+..+.. + ......+ -..|+++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 321 11111211111111 346889999999988888644 4466666553221 1 1111111 345677788
Q ss_pred eC-CCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 981 SC-DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 981 s~-dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
.+ .+.+|+-+.+++.+.-.|.... .+..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE-VIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC-eeeeEE
Confidence 76 4556666667777777776644 344443
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.35 E-value=2.3 Score=47.17 Aligned_cols=281 Identities=11% Similarity=0.124 Sum_probs=143.8
Q ss_pred CCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-----CCCEEEEEeCCC
Q 001396 338 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGVAYSKH 412 (1086)
Q Consensus 338 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las~~~d~ 412 (1086)
++++-.|++||..|.++||+...+....... .+-..-+.+|-.++.-+ +...||+ -.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~l---------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDL---------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccE---------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 4444469999999999999996544221100 00112335676666532 2334555 4566
Q ss_pred EEEEEEecCCCcc------ccceEeccccc--cEeEEEecCC----CCcEEEEEEeCCCcEEEEeCCCCceeEEeec--C
Q 001396 413 IVQLYAYHGGSDA------RQQLEIDAHVG--NVNDLAFSAP----CKQISVITCGDDKTIKVWDAVTGSRTYSFEG--H 478 (1086)
Q Consensus 413 ~i~iwd~~~~~~~------~~~~~~~~h~~--~v~~v~~s~d----~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~--h 478 (1086)
.+.||.+...... ..+..+..|.- ....++.-|- |+. ++..-+.||.+.+++-+.-...+.+.+ .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7888888432111 11112223322 2223333222 233 788889999999999554443344433 3
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-----------------------EEecCCCC--ceEEEEEec
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------------------VDYDAPGL--GCTRMAYSA 533 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~~~~~--~i~~~~~s~ 533 (1086)
.+|+ ++.+.. ..|++++.+..+..|........ ..+..... .+..+.++.
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3443 444443 37889988888888865321110 11111111 223333333
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec----CC---CEEEEEECCCcEEEEEcCCCee
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
....+++-+ +..+.+.+. +|......+- . ..+...+.|.. ++ ..++.++.++++.||.= .++
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L 320 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTL 320 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeE
Confidence 333444443 456777775 4544333322 2 12222222222 22 24888999999999863 334
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+.........-.+....|..-...+++-+.+|.+.+-=+.+....
T Consensus 321 ~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 321 VWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred EEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 433332211111112222333557888888999998777766443
No 404
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.31 E-value=0.19 Score=43.18 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=66.0
Q ss_pred eEEEEEeC---CC-CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc
Q 001396 883 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 958 (1086)
Q Consensus 883 v~~l~~sp---dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 958 (1086)
|++|++.. || +.|+.|+.|..|++|+=+. .+...... ..++.++-...+++..+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777765 32 6799999999999998664 22222211 2477888877776655678899999975
Q ss_pred CCccceeccccCCccCEEEEEEeC---CC-CEEEEEECCCcEEE
Q 001396 959 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 998 (1086)
Q Consensus 959 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~s~~~Dg~v~v 998 (1086)
.. +.|.......++++++.. || .-|++|=.+|.|-+
T Consensus 71 ~~----RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQ----RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cc----eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 32 223333344567766544 44 35888888887753
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.27 E-value=2 Score=45.52 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=109.8
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cee-
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV- 872 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~- 872 (1086)
....+.|..+ ..++++..+. .+.....|+.-..+. .-+.....+.... ++..++ ++..|.|+ .... |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy--~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIY--RTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EE--EESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEE--EeCCCCCCe
Confidence 4566777654 4455555553 333433333322221 2223333444433 343333 34455433 3332 221
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCe
Q 001396 873 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 952 (1086)
Q Consensus 873 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 952 (1086)
......-.+.+..+..++||+++++++.-....-||-.... ......... .+|..|.|+|++.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 22233445778899999999999887766656677755421 112222211 3699999999999988887788
Q ss_pred EEEEE-cCCccceecc---ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccce
Q 001396 953 LAIYE-AEELTCLKQW---FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1028 (1086)
Q Consensus 953 i~vwd-~~~~~~~~~~---~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1086)
|+.=+ ...++....- .....-.+..++|.+++...|+|+ .|++ +...+.|+-=.+.......+.. ..
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n-------~~ 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSN-------LY 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCc-------eE
Confidence 88776 2223222211 111244589999999988888665 5544 3466666554444323333333 33
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEE
Q 001396 1029 AIAAHPLKPTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 1029 ~~~~~p~~~~~l~~~~~dg~v~vw 1052 (1086)
.+.|.+ .+.-.+-+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 566664 3566667788887655
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=1.5 Score=44.69 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=124.1
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
....+.++.|+|+.+.|++......-.|+- ...|..+.+.++.+ -.....+++..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEec
Confidence 344599999999999999998876555542 23344455555553 33445678888
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEEEE-------Ec---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee---
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTILT-------IM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--- 872 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~~~-------~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--- 872 (1086)
+|+++++-. ++.+.++.+.....+.. +. ..+...-.+||+| .++.|..+-+-.-+.||.+..+..
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888877765 67787777665432221 11 1245678899999 566666677777677776653321
Q ss_pred EEEeccc-------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 873 ISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 873 ~~~l~~h-------~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|................+-...-.....++..++|.+
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 1111112 13466778876 456677777788777777766432221122222222222234567888888888
Q ss_pred EEEEeCCeEEEEE
Q 001396 945 FLLVHETHLAIYE 957 (1086)
Q Consensus 945 l~~~~d~~i~vwd 957 (1086)
-+++..+-.+.+.
T Consensus 298 YIvSEPnlfy~F~ 310 (316)
T COG3204 298 YIVSEPNLFYRFT 310 (316)
T ss_pred EEEecCCcceecc
Confidence 7777666555443
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.06 E-value=3.4 Score=46.38 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=42.8
Q ss_pred eEEEEecCCCEEEEEeC--CeEEEEEcCCcc--ceeccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 934 THIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 934 ~~~~~s~dg~~l~~~~d--~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
--+||+|....+|++++ +.|.||.+.... .++++.-....+...++|-.|.-.|+-.|.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 35899999999999644 679999986422 233333344778889999999887776664
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.86 E-value=0.89 Score=49.37 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=95.0
Q ss_pred EEEeecCCCEEEEEe---C----CeEEEEEccCceEEEEEcCCCC---CeEEEEEcCCCCCEEEEEe-------------
Q 001396 801 CFALSKNDAYLFSAS---G----GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGM------------- 857 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~---d----g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~lasg~------------- 857 (1086)
.+-.-|+|+.++++- + |.+.++|-++.+.......... .-..+-+.| ..+.+++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence 344557888888762 1 4588999998888877764332 335667778 666777642
Q ss_pred -------CCCeEEEEEcCCceeEEEecccc--CCeEEEEEeCC--CCE-EEEEeCCCcEEEE-ECCCCceeeeeeeeccC
Q 001396 858 -------DDSTILIYNARSSEVISKLEGHS--KRVTGLVFSDA--LNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 858 -------~dg~v~iwd~~~~~~~~~l~~h~--~~v~~l~~spd--g~~-l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~ 924 (1086)
...++.+||+.+.+.++++.--. ..+..|.|..+ ..+ ++.+.-...|..| .-+.++-...+++..+.
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 23589999999999998887422 23556777654 444 3333334444444 33455544445555443
Q ss_pred CCc------c-------CCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccce---eccccC-------C--------
Q 001396 925 GVM------T-------LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCL---KQWFPI-------S-------- 971 (1086)
Q Consensus 925 ~~~------~-------~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~---~~~~~~-------h-------- 971 (1086)
... . ...-|+.+.+|.|.++|.++ ..|.++.||+...... .+...| |
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 210 0 01357999999999999985 6899999999864332 221111 0
Q ss_pred ccCEEEEEEeCCCCEEEEEE
Q 001396 972 SVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 972 ~~~v~~l~fs~dg~~l~s~~ 991 (1086)
.+...-+..|-||+.|....
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 23446678899998877654
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.71 E-value=1.5 Score=47.62 Aligned_cols=253 Identities=10% Similarity=0.034 Sum_probs=105.0
Q ss_pred CccEEEEEE-cCCeEEEEEcCCCc----eeEEecC---CC----CceEEEEEecCCCEEEEEee--CCCCceeEEEEeCC
Q 001396 492 NIHFIFSIS-VDGKIKAWLYDSLG----ARVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES 557 (1086)
Q Consensus 492 ~~~~l~s~s-~dg~i~vwd~~~~~----~~~~~~~---~~----~~i~~~~~s~d~~~l~~~~~--~~~~~~~i~iwd~~ 557 (1086)
+.++|+..+ ..+.|.+.|+.+.. ...++.. .. ..-..+-.-|+|+.++++-. ++++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 445677766 67889999987422 1122221 00 12223444589988887654 34556778899988
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEE--------------------CCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+.+.............--..+.|.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888877765442223456778888888888854 23579999999999999998764322
Q ss_pred CCceEEEecC--CCEEEEEE-CCCcEEEEEC-CCCCee--eeccccccceeeeEEccC-CCceeccccCCeeeecCCCCC
Q 001396 618 ENPRICFNKN--GTLLAVIA-NENRIKILET-PESNSV--DAAGVLSDNLRKLSVNPI-STVTGAGIANGSVSVNEDPKE 690 (1086)
Q Consensus 618 ~v~~v~~s~~--~~~l~~~~-~dg~i~iw~~-~~~~~~--~~~~~~~~~v~~~~~~p~-~~~~~~~~~~~~~~~~~~~s~ 690 (1086)
....+.|..+ ..+=++++ -..+|..|-- ..+... ..+......+..-.+.+. ....++.+-...+.+ |.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i----Sl 321 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI----SL 321 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-----T
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE----cc
Confidence 2445666543 44333332 2344544433 333211 111110000000000000 000000011112222 45
Q ss_pred Ccccc-eeccccCccceeeeeecCC-ccccccccCC------------cccccceEEEEEecCCceEEEeec
Q 001396 691 DVKPE-ISVEAENKSEVEKPLFARP-SECQSLLLPS------------KVKANKISRLTYNNGGQAIFALAS 748 (1086)
Q Consensus 691 d~~~l-~s~~~d~~i~vw~~~~~~~-~~~~~~~~~~------------~~~~~~i~~l~~s~~g~~l~~~~~ 748 (1086)
|.++| +++-..|.+|.||+..... .....+.+.. ..-.+..+-+..|.||+++..+.+
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 56655 5667789999999753221 1111111111 111233467888999998877654
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=95.63 E-value=3.5 Score=45.08 Aligned_cols=154 Identities=11% Similarity=0.027 Sum_probs=90.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEE-EEcCCceeEEEe-ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILI-YNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~i-wd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
...+.++.+.+ ++.++++|. .|.+.. ++ ..++.-... .+-...++++.+.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45788999999 777776554 564443 22 122211112 233457899999999987765 4567664323343331
Q ss_pred eeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecccc--CCccCEEEEEEeCCCCEEEEEEC
Q 001396 915 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
...+..+.... ...+..+++.+++..++++.+|.+. .....|+....... .-......+.|..+++.+++ +.
T Consensus 248 --W~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~ 321 (334)
T PRK13684 248 --WSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ 321 (334)
T ss_pred --cccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC
Confidence 11111111101 1247789999999988888888665 34455554443221 11346788888888777664 47
Q ss_pred CCcEEEEE
Q 001396 993 DGTLSIHE 1000 (1086)
Q Consensus 993 Dg~v~vWd 1000 (1086)
.|.|.-|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78887765
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.60 E-value=0.03 Score=39.88 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=29.7
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCce
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 363 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~ 363 (1086)
...|.+++|+|... |||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 34799999999998 7999999999999998 5553
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.59 E-value=3.2 Score=42.43 Aligned_cols=194 Identities=11% Similarity=0.066 Sum_probs=114.8
Q ss_pred cceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 729 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
.-...+.|..+|..+-+++.-|.=. ++.+++.+|+......++ ...--..+++..|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~--------------------l~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d~ 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSS--------------------LRKVDLETGKVLQSVPLP---PRYFGEGITILGDK 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEE--------------------EEEEETTTSSEEEEEE-T---TT--EEEEEEETTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEE--------------------EEEEECCCCcEEEEEECC---ccccceeEEEECCE
Confidence 3456788878888777777765332 233455666655555553 22333456666666
Q ss_pred CEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-----CCe
Q 001396 809 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRV 883 (1086)
Q Consensus 809 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~v 883 (1086)
-+..+..++...+||..+.+.+.++.- .+.=..++ . |++.|+.......++++|..+.+....+.-.. ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 566666689999999999999988863 34556666 3 55566666667789999998877666654321 235
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccC-------CCccCCCCceEEEEecCCCEEEEEeC
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
.-|.+- +|...|=.=....|..-|..+|+.....-+..+. .......-...+|+.|.+..+.++..
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 556775 6766666555566777788887765533222211 11111235789999998887777443
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.55 E-value=0.056 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEec
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 420 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 420 (1086)
...|.+++|||...+||.++.+|.|.|+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999983
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.53 E-value=2.1 Score=41.85 Aligned_cols=137 Identities=14% Similarity=0.102 Sum_probs=79.9
Q ss_pred cccEeEEEecCCCCcEEEEEEeCC---------CcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGDD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 505 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i 505 (1086)
..+.++-..+|+|+ +++-.-.| |.++.|-. +..+..+...-+.-+.++|.. ....+.++-+.+-+|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccc-cCcEEEEEccCceEE
Confidence 45677778899999 43322222 22333321 111112222222334556642 222345566777888
Q ss_pred EEEEcC--CCc-----eeEEecC----CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCc
Q 001396 506 KAWLYD--SLG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 574 (1086)
Q Consensus 506 ~vwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 574 (1086)
.-||.+ ++. .+..+.. .......+++..+|++.+++.. .+.|...|+.+|+.+.++.-.. ..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cc
Confidence 888843 322 2222222 1112345666778888877765 5679999999999999999877 88
Q ss_pred eEEEEEecC
Q 001396 575 VSVVHFDTA 583 (1086)
Q Consensus 575 v~~~~~~~~ 583 (1086)
+++++|.-.
T Consensus 256 itsccFgGk 264 (310)
T KOG4499|consen 256 ITSCCFGGK 264 (310)
T ss_pred eEEEEecCC
Confidence 999999754
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.49 E-value=2.5 Score=51.20 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=97.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceE-------------EEeecccCCccEEEEEEc----------CCeEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY-------------SLCPHAKENIHFIFSISV----------DGKIKA 507 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~s~----------dg~i~v 507 (1086)
.++.++.|+.+.-.|.++|+.+..+. ..+.|. .+.-.|--.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 56778889999999999999987763 222221 000000001235666643 688999
Q ss_pred EEcCCCceeEEecCC---------CC--------ce-EEEEEecCCCEEEEEeeCC--------------CCceeEEEEe
Q 001396 508 WLYDSLGARVDYDAP---------GL--------GC-TRMAYSANGRRLFSCGTSK--------------EGESFLVEWN 555 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~s~d~~~l~~~~~~~--------------~~~~~i~iwd 555 (1086)
+|..+++....+... .+ .+ ..++++++...++....+. .-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999988766431 00 11 2345666655555433211 1235677889
Q ss_pred CCCCeeeeEEeccc--ccC----CceEEEEEec-CCC---EEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 556 ESEGAIKRTYQGLQ--LQH----NSVSVVHFDT-AKD---QILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~--~~~----~~v~~~~~~~-~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
.++|+..-.++... ..+ ....-+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 99998887776522 000 1112222333 453 78889999999999999999887654
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.47 E-value=0.27 Score=54.67 Aligned_cols=161 Identities=13% Similarity=0.079 Sum_probs=92.5
Q ss_pred CCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCC----CEEEEEeCCCcEEEEECCC
Q 001396 838 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg----~~l~s~s~dg~i~iwd~~~ 911 (1086)
.++..++|.- +.+.+.+.- .+|.+++=| .+.+.+|+ .|..+.|+|-+ ..|......+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899984 444444432 233333221 23344444 58999999853 3455567788899999873
Q ss_pred C--ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEE
Q 001396 912 W--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 988 (1086)
Q Consensus 912 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 988 (1086)
. +..+..+-++-+-.....---..+.|+|....|++ .....-.++++.........-....+.|-+.||..||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2 22222222222111111112356889999999988 44444455666543332222223478999999999998766
Q ss_pred EE-ECCCcEEEEEcCCCce
Q 001396 989 TS-FVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 989 s~-~~Dg~v~vWd~~~~~~ 1006 (1086)
++ |..=.-++||-....+
T Consensus 172 VAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEeCCeEEEEEecCchhhh
Confidence 55 3334578898665533
No 417
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=0.058 Score=63.63 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=77.0
Q ss_pred cEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccC
Q 001396 494 HFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 572 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 572 (1086)
..++.|+..|.+-..|+... .....-....++|++++|+.+|+.++.|-. +|.|.+||...++.++.+..+....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 36888888899988887653 222222334568999999999999999875 7789999999999999988877444
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
..+..+.+..++..++++...|. +|...
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 55555666666677888777776 56543
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.4 Score=57.23 Aligned_cols=248 Identities=9% Similarity=0.046 Sum_probs=139.0
Q ss_pred CCCeeEEEeecCCCEEEEEe--CC-eEEEEEccCceEEE-----EEcC------CCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 796 QEAVPCFALSKNDAYLFSAS--GG-VISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~--dg-~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
...+..++..+|+...++.. +| .|..||+.+...-. -+.. ...-..++.|.|.=-...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45667788888887766664 33 58999987543322 1111 12334677888743445666778999
Q ss_pred EEEEEcCCce-eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 862 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 862 v~iwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
|++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ..+|.++.|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9888765432 223333 4566899999999999999999999988876543211 222222211 24788888877
Q ss_pred CCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCC
Q 001396 941 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1020 (1086)
Q Consensus 941 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~ 1020 (1086)
.-.++++-... ++. ...+...+++.+ .-.-||.+.+-..-.+..- ...++...
T Consensus 254 t~eflvvy~n~--------ts~--------~~dpd~y~~~~~------k~kp~g~~nF~E~~d~tpp-----fg~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGNV--------TSE--------TDDPDSYDQKMY------KIKPDGSANFQETFDITPP-----FGQIVRQP 306 (1405)
T ss_pred ceeEEEEeccc--------ccC--------cCCchhhhhccc------cccCcceeeeccccCCCCC-----ccccCccc
Confidence 77777662111 110 001111111111 1113444433222211110 11122221
Q ss_pred ccCcccceEEEECCCCCCEEEEEeCC-CcEEEEccCCCCCCCCCCCcccccCCCCCCCCccc
Q 001396 1021 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD 1081 (1086)
Q Consensus 1021 ~~~~~~~~~~~~~p~~~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1081 (1086)
|.. ...-..|.|++.+.+++|..- ..|-+|... ..|...-+.+..++..+.++++|
T Consensus 307 h~y--~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 307 HMY--KVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTD 363 (1405)
T ss_pred hhH--HHhhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCC
Confidence 222 223456887677776666554 468889883 55777777777677766666666
No 419
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.22 E-value=10 Score=45.85 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=65.1
Q ss_pred EEeecCCCEEEEEeCCeEEEEEccCceEEEEEc--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEecc
Q 001396 802 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 878 (1086)
Q Consensus 802 l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 878 (1086)
.|..|-..++.+|-+..+++||+...+.++... .....|+.+.+. +..+++|...-.|.++..+. +..+..+.+
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 566777778888889999999998777665433 235667788774 45777777666566544432 233334432
Q ss_pred --ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001396 879 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 879 --h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 910 (1086)
-...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 22346666665 44566666666655555443
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.12 E-value=0.059 Score=52.25 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=68.8
Q ss_pred EEEEE-eCCeEEEEEccCceEE-EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCeEEE
Q 001396 810 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 886 (1086)
Q Consensus 810 ~l~~~-~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v~~l 886 (1086)
-+++| ++|.|.+|...-.... ..+......|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622111 11111223333333333356689999999999999999988888887788 566666
Q ss_pred EEeCCCCEEEEE--eCCCcEEEEECCC
Q 001396 887 VFSDALNILVSS--GGDAQIFVWDVDG 911 (1086)
Q Consensus 887 ~~spdg~~l~s~--s~dg~i~iwd~~~ 911 (1086)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666677777777 7788888888765
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.98 E-value=4 Score=40.04 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=113.6
Q ss_pred EEEEeCCCcEEEEeCCCCceeE-EeecCCcceEEEeecccCCc-cEEEE-EEcCCeEEEEEcCCCceeEEec-------C
Q 001396 452 VITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKENI-HFIFS-ISVDGKIKAWLYDSLGARVDYD-------A 521 (1086)
Q Consensus 452 l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~-~~l~s-~s~dg~i~vwd~~~~~~~~~~~-------~ 521 (1086)
+..-=..+.|.-||.++.+..+ ++.+ .++.++.+- -.++ +.+++ ++..=.|--||......+.... .
T Consensus 30 l~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilp-v~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 30 LYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILP-VEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEeccCceehhhhhhhheEEEEEec--CcceeEEEE-ecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 3333445567778887755432 2222 223333332 2222 22333 3333334457644332222111 1
Q ss_pred CCCceEEEEEecCCCEEEEEeeCCCC------ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EECCC
Q 001396 522 PGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH 594 (1086)
Q Consensus 522 ~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg 594 (1086)
...+...-..+|+|++.+ |.....+ .+.++.|-.. ..+..+...- .--+.++|+.+.+.++. -+.+-
T Consensus 107 kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v---~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCV---GISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred HhcccccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhc---cCCccccccccCcEEEEEccCce
Confidence 123556667889999943 3322111 1233444321 1122222211 33467888887766655 55677
Q ss_pred cEEEEE--cCCCeeE-----EEEcCC--CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeE
Q 001396 595 VIKIWD--MNKVQLL-----TTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 595 ~i~iwd--~~~~~~~-----~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
.|.-|| ..+|... ..+... ......-.++...+|++.++.-..++|...|..+++.+..+.-....+++++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 787787 5555432 222211 0112234577788899999999999999999999999999999999999998
Q ss_pred Ec
Q 001396 666 VN 667 (1086)
Q Consensus 666 ~~ 667 (1086)
|.
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 86
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.97 E-value=0.59 Score=54.16 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=78.2
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEc-----
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----- 510 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~----- 510 (1086)
...-+.-|.-++ ..+..+...++.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555555 44444445689999998887554332 3578999999999999999999999999999843
Q ss_pred CCCc----eeE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 511 DSLG----ARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 511 ~~~~----~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
.... .+. ......++|....|.++|..++.++. ++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 1111 111 12233468899999999998887643 5888874
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.96 E-value=6.8 Score=47.14 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=57.1
Q ss_pred CCCCeeEEEeecCCCEEEEEeCCeEEEEEccC-ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 795 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
....|..+.++|+|+++|..+...|.|..+.. +.....+.+....|.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 45678999999999999999876666666532 111112222222232222221 111111
Q ss_pred EEeccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCC
Q 001396 874 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spd---g~~l~s~s~dg~i~iwd~~~ 911 (1086)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123445777888876 47888888899999999875
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.72 E-value=8.2 Score=42.94 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=78.4
Q ss_pred CCeeEEEeecCCCEEEEEe------------CC-eEEEEEccC--ce--EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 797 EAVPCFALSKNDAYLFSAS------------GG-VISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~------------dg-~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
.....|+|.++|+++++-. .+ .|.+++-.+ |+ ....+.......+.+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3456899999999887752 12 677775432 32 2234443444568899998 77 544 4444
Q ss_pred CeEEEEEcCC-------ceeE-EEecc----ccCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEE
Q 001396 860 STILIYNARS-------SEVI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 908 (1086)
Q Consensus 860 g~v~iwd~~~-------~~~~-~~l~~----h~~~v~~l~~spdg~~l~s~s~d-------------------g~i~iwd 908 (1086)
...++.|... .+.+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333334432 1112 22322 12347789999999888766621 3344444
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
.++++. ..+ ..+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~--a~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVV--AHGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEE--ecCcC----CCccceECCCCCEEEE
Confidence 444331 111 12222 2567999999999877
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.66 E-value=0.94 Score=52.54 Aligned_cols=124 Identities=9% Similarity=0.083 Sum_probs=76.6
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec-cccCCeEEEEEe--CCCCEEEEEeCCCcEEEEEC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~v~~l~~s--pdg~~l~s~s~dg~i~iwd~ 909 (1086)
+...-...+-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|. |||+.+++.|-.+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334445555555 45555555555699999999887543322 356789999986 79999999999999999854
Q ss_pred CC----CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc
Q 001396 910 DG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 958 (1086)
Q Consensus 910 ~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 958 (1086)
.. ........++...-......+|.+..|-++|.+++ +..+.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 21 11111222222211111113688999999998655 45667888774
No 426
>PHA03098 kelch-like protein; Provisional
Probab=94.36 E-value=2.1 Score=50.80 Aligned_cols=154 Identities=8% Similarity=-0.017 Sum_probs=74.6
Q ss_pred CccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC--ceeEEEEeCCCCeeeeE
Q 001396 492 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 492 ~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~ 564 (1086)
++..++.||.+ ..+..||..+.+=...-..+.......+..-+++..+.||....+ -..+..||+.+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45567777765 246667766543222111111111112223456666666632221 25688999887655432
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECC--------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
-.... .... .++ ...++...+.|+.+ ..+.+||..+++....-...... ....+..-+++.++.|+.
T Consensus 422 ~~~p~-~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR--INASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc--ccceEEEECCEEEEEcCC
Confidence 21111 0111 122 22345555556532 23888998877654432211111 111122236777777765
Q ss_pred C-----CcEEEEECCCCCe
Q 001396 637 E-----NRIKILETPESNS 650 (1086)
Q Consensus 637 d-----g~i~iw~~~~~~~ 650 (1086)
+ ..+.+||..+.+.
T Consensus 497 ~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred cCCcccceeEEEeCCCCEE
Confidence 4 4678888776643
No 427
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.35 E-value=0.11 Score=50.57 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=60.0
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE-EEECCCCCEEEEEeCCCEEEEEEecCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VVWSPDGSLLGVAYSKHIVQLYAYHGG 422 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~las~~~d~~i~iwd~~~~ 422 (1086)
+++|+.+|.|.+|++..-...... ...-...|.+ +.--.++.+..+++.+|.|+-|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDR------------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHHh------------------hhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 789999999999998732111100 1111223333 333345668888999999999999877
Q ss_pred CccccceEecccc-ccEeEEEecCCCCcEEEEEE--eCCCcEEEEeCC
Q 001396 423 SDARQQLEIDAHV-GNVNDLAFSAPCKQISVITC--GDDKTIKVWDAV 467 (1086)
Q Consensus 423 ~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~--~~d~~i~iwd~~ 467 (1086)
+.+. ....|. .++.....+..++ +++.+ |.|..++.|+++
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 6544 233455 4444444444444 44444 556666666654
No 428
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=94.34 E-value=0.032 Score=36.80 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhhhccCchhhhhh
Q 001396 4 LNKDLVFLILQFLNEEGFTESAHI 27 (1086)
Q Consensus 4 ~~~evvrli~q~L~~~G~~~s~~~ 27 (1086)
.+.++.++|+|||...||..|+++
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~ 25 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAET 25 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHH
Confidence 367899999999999999999876
No 429
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=94.26 E-value=0.047 Score=50.01 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=61.8
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccccccccccccc----CC--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYY----GD--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~----~~--~~~~r~~l~ 139 (1086)
++|.++-+.|+||+..|..++|..++++.-..+.....+.+++|+.+....++.+++...... .. ...+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 899999999999999999999999999865555444677788998888888777766443311 11 367788888
Q ss_pred HHHHh
Q 001396 140 LELKQ 144 (1086)
Q Consensus 140 ~~l~~ 144 (1086)
..|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 88887
No 430
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=94.17 E-value=0.042 Score=33.74 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhccCchhhhhh
Q 001396 6 KDLVFLILQFLNEEGFTESAHI 27 (1086)
Q Consensus 6 ~evvrli~q~L~~~G~~~s~~~ 27 (1086)
+++-+||.+||.+.||..||.+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~ 22 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKA 22 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHHH
Confidence 5788999999999999999975
No 431
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.17 Score=53.33 Aligned_cols=104 Identities=14% Similarity=0.269 Sum_probs=79.3
Q ss_pred HHHHHHHhhhccCchhhhhh----------------ccccHHHHHHHHhCCCHHHHHHhhccC-cccccccccceehhhh
Q 001396 8 LVFLILQFLNEEGFTESAHI----------------FYFDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI 70 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~~----------------~~~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i 70 (1086)
+-.+|+.++...|....+.. +..++.++-+++..||-.-|++.+... ..|.+. ... +.|.+
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~-LE~~L 196 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSS-LEFKL 196 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-ccc-HHHHH
Confidence 46788889998899988877 223577788999999999999988764 223322 222 88999
Q ss_pred hhhhhhhhcCCCCHH--HHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001396 71 RKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFKELAQLL 113 (1086)
Q Consensus 71 ~~q~~~Ell~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~L~~ll 113 (1086)
..+.|++++..|... +|++..|+.++|+........+.|-.+|
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 999999999998877 9999999999999554444455544433
No 432
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=94.06 E-value=0.045 Score=50.76 Aligned_cols=79 Identities=13% Similarity=0.245 Sum_probs=55.0
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccC----C--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYG----D--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~--~~~~r~~l~ 139 (1086)
++|.++-+.|++|+..+..++|..+|.+.-..+.....+++++|..+....++.+.+....+.. . ...+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 8999999999999999999999999998655554445666888877666665554442222111 1 367788888
Q ss_pred HHHHh
Q 001396 140 LELKQ 144 (1086)
Q Consensus 140 ~~l~~ 144 (1086)
..|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88887
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.03 E-value=7.4 Score=46.85 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=68.9
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccc---cceeeeeeee-cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGA---CSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 425 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~ 425 (1086)
|+.+.+||-..... ...+++.-+... ....++.... ....-.|..+.+||+|++||..|..| |.|-.+-.. .
T Consensus 41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~ 116 (717)
T PF10168_consen 41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--W 116 (717)
T ss_pred CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--c
Confidence 57788888665443 222333222111 1122333222 22346899999999999999998877 555444210 0
Q ss_pred ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC-CccEEEEEEcCCe
Q 001396 426 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVDGK 504 (1086)
Q Consensus 426 ~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~ 504 (1086)
.....+.+-...|.|=.+.-+.. +.. ..+...|..+.|+|.. ++..|+.-..|++
T Consensus 117 g~~~~~~~g~~~i~Crt~~v~~~---~~~---------------------~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~ 172 (717)
T PF10168_consen 117 GKNGEFEDGKKEINCRTVPVDER---FFT---------------------SNSSLEIKQVRWHPWSESDSHLVVLTSDNT 172 (717)
T ss_pred CccccccCCCcceeEEEEEechh---hcc---------------------CCCCceEEEEEEcCCCCCCCeEEEEecCCE
Confidence 00001111122222222221111 110 1233455666777653 4567777778888
Q ss_pred EEEEEcCCC
Q 001396 505 IKAWLYDSL 513 (1086)
Q Consensus 505 i~vwd~~~~ 513 (1086)
+|+||+...
T Consensus 173 lR~y~~~~~ 181 (717)
T PF10168_consen 173 LRLYDISDP 181 (717)
T ss_pred EEEEecCCC
Confidence 888887643
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.89 E-value=9.1 Score=39.61 Aligned_cols=214 Identities=12% Similarity=0.124 Sum_probs=124.0
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCC------CCce-eEEeec-----CCcceEEEeecccC------C----cc
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TGSR-TYSFEG-----HGAPVYSLCPHAKE------N----IH 494 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~------~~~~-~~~~~~-----h~~~v~~~~~~~~~------~----~~ 494 (1086)
.-+.|+|+|.+. +-++...-+...+||.. ..+. +-++.. .....+.+.|+... + ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778889999986 1222 233331 12345566654221 1 12
Q ss_pred EEEEEEcCCeEEEEEcCCCce-----eEEecC--CCCceEEEEEecC--CCEEEEEeeCCCCceeEEEEeCCCCeee--e
Q 001396 495 FIFSISVDGKIKAWLYDSLGA-----RVDYDA--PGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIK--R 563 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~-----~~~~~~--~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 563 (1086)
.++.+++||+|.-|...-... ...+.. ...-...+++... +.+|...-. ..++|.++|-.=.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478899999999997432222 122221 2233456666543 566666543 2667888874422111 0
Q ss_pred EEeccc--ccCCc--e---------EEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec----
Q 001396 564 TYQGLQ--LQHNS--V---------SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 626 (1086)
Q Consensus 564 ~~~~~~--~~~~~--v---------~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 626 (1086)
.+.... ....+ | .-..-.++...=+.|..-|.|-+||+ .|++++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 111110 00000 1 11111222222233445578999997 578888887666555667788765
Q ss_pred --CCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 627 --NGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 627 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.|.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 466777767799999999998887776664
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=3.6 Score=47.55 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=99.5
Q ss_pred eEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe----ccccCCeEEEEEeCCCC
Q 001396 818 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL----EGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 818 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l----~~h~~~v~~l~~spdg~ 893 (1086)
.|+||++. |..+..+.-..+.+..+.|+. +. -|.+...+|++++|++. |+.+... +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 48888874 565555443444888999996 44 55567889999999987 3333321 22334466666666664
Q ss_pred EEEEEeCCCcEE-EEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE--EEEEeC--CeEEEEEcCCccc-eecc
Q 001396 894 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTC-LKQW 967 (1086)
Q Consensus 894 ~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--l~~~~d--~~i~vwd~~~~~~-~~~~ 967 (1086)
.+.+. +|++. +-+++... .+..+...+... .-.+...-+++.. +...-+ -...++-..++.. ...+
T Consensus 141 avlt~--~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 34333 33333211 111111111111 1123333333221 111111 0111222221111 1111
Q ss_pred ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecccc
Q 001396 968 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1014 (1086)
Q Consensus 968 ~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~ 1014 (1086)
.. ....+..+..||+.++|+-=..+|.|.+-+.+..+..+.+....
T Consensus 213 ~~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 213 SW-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred CC-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 11 14678889999999999999999999999999999998887433
No 436
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.86 E-value=2.2 Score=41.84 Aligned_cols=158 Identities=11% Similarity=0.104 Sum_probs=86.2
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe----CC---eEEEE
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY 956 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~---~i~vw 956 (1086)
..++-+.. ..|..+.....|.+|++...+......+.+. +.|..++++..|.||++-. .. .+++|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 33444432 3444445567799999995554443333333 3588999999999999931 22 45664
Q ss_pred ---EcC--CccceeccccCC---------------------ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCce-eee
Q 001396 957 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCR 1009 (1086)
Q Consensus 957 ---d~~--~~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~-~~~ 1009 (1086)
+.. ....++.-..|| ...+.+++..|-..-|+.|+ ++++.+|.+..... ...
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~ 171 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEK 171 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEeccc
Confidence 322 112222112232 34556666666444455454 56899999887665 332
Q ss_pred eccccccCCC-CccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1010 ILSTAYLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1010 ~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
+....+.+.. .+...+.+.-+++. ++++|..+ +-.+++..+
T Consensus 172 ~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 172 FSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ccEEechhhhhheecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence 2222222111 12334556667776 36777655 445566554
No 437
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.82 E-value=14 Score=41.55 Aligned_cols=272 Identities=16% Similarity=0.088 Sum_probs=134.9
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|.++.+.-.|. +-.|+.|| +..||..+|+.+.... .....+|.++.-+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEEe
Confidence 789999999996 45566655 6677888877665311 0111456666555555 466777
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCC--cceEEEe
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 486 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~--~~v~~~~ 486 (1086)
.+| |++.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|..+ .....+...... +-|. ..|.++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeeccccee-EecCCCCccccccccCCcccccccee
Confidence 787 78877766321110 0111233444444444443 44455444322 233333222222 1121 2233333
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec--CCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 564 (1086)
. +.+| -|-+++.+|.+++-+-+-..........+..+...+..| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 2 3333 466677777666543321111111111111111111222 1111111111 22355556667776666
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 642 (1086)
..... ...|+.+++..+ ..+-.|+...-+..|+.++ +..+...... ..++|..+.-.|+++ |..|+.+|.++.
T Consensus 370 v~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 44333 356777777774 4566666665566777666 3333333222 234577777788887 777888775543
No 438
>PHA03098 kelch-like protein; Provisional
Probab=93.62 E-value=2.4 Score=50.19 Aligned_cols=195 Identities=11% Similarity=0.011 Sum_probs=91.1
Q ss_pred CCCEEEEEeCCC------EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCC
Q 001396 401 DGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 469 (1086)
Q Consensus 401 dg~~las~~~d~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~ 469 (1086)
++..++.|+.++ .+..||..+++-.. ...+.........+. -+++ +++.||.+ ..+..||..++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCCC
Confidence 556666665432 47788887765322 111111111122222 2455 56666654 35778888766
Q ss_pred ceeEE--eecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 470 SRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 470 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+-... +....... +++. -++...+.||.+ ..+..||..+.+=...-..+.......+...+++..+.|
T Consensus 369 ~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 369 KWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred ceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 53221 11111111 1111 144566666632 357778876543222111111111122333466666666
Q ss_pred eeCCCC----ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeE
Q 001396 542 GTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 607 (1086)
Q Consensus 542 ~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 607 (1086)
+.+... -..+.+||..+++....-.... .......+.+ +++.++.|+.+ +.+.+||..+.+-.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 543221 1348899988776543221111 0111222222 55566666643 46788888776543
No 439
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.32 E-value=27 Score=43.22 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=103.4
Q ss_pred CCCCeeEEEee---c----CCCEEEEEeCCeEEEEEccCc---------------eEEEEEcC---CCCCeEEEEEcCCC
Q 001396 795 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 849 (1086)
Q Consensus 795 ~~~~v~~l~~s---~----dg~~l~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 849 (1086)
...+|..|+|+ . ..++|++-....+.|+...-. ..+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46688888888 2 235787777788888772211 12223321 22356678888877
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
.+.+|+....|...||++..+... +. ... -+.....|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~----------~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SNL----------RLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CC-cce----------eeccCCCccc-cCCCccc-----------------
Confidence 778888888888888888211110 00 111 1111222333 2222210
Q ss_pred CCCceEEEEecCCCEEEEEeCCeEEEEEcCCcccee-ccccCCccCEEEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001396 930 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
..-..+.|.++-..|++.....+.++|+.+..... .........|..+.-+++. .+++.- ....|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 12446888999899999999999999999876643 2233346788888888872 222222 2356877788763
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.31 E-value=5.9 Score=38.92 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=85.5
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEEcc--CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEE---Ec
Q 001396 799 VPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---NA 867 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iw---d~ 867 (1086)
...++-++.+.++++++.+.|.+|++. ..+...+|..- +.|..++++. .|++|++--.+. .+|+| +.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 334555554555565678899999988 44556667644 7899999999 899999854332 55664 32
Q ss_pred C--CceeEE-Eeccc---------------------cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee--eeeee
Q 001396 868 R--SSEVIS-KLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQ 921 (1086)
Q Consensus 868 ~--~~~~~~-~l~~h---------------------~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~ 921 (1086)
. ..+.+. .+-|| ..++.+++..|-..-|+.|+ ++.+.+|.+....... ...+.
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence 2 111111 22232 23566777777544455555 4569999887533210 00111
Q ss_pred ccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc
Q 001396 922 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 958 (1086)
Q Consensus 922 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 958 (1086)
...........+.-...+=-+.|+|..++..+.++.+
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred chhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 1000000000111222222466777777777777665
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=3.3 Score=44.65 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.++|.++.||+|.+ +||+--.+++|.+.+....+.......+ .+..+..|....|+.+ .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 7999999999999998443322211100 1123456888999865 77888
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
.+..| +.+|-+...+ +.....+.|...|....|.++.+-.+|+++-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 87777 7888776543 22224567888999999999988533444333444443444433
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.16 E-value=17 Score=40.50 Aligned_cols=150 Identities=8% Similarity=0.018 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee---
Q 001396 840 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--- 915 (1086)
Q Consensus 840 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~--- 915 (1086)
...+..++ ++.+++.|.....++-||--... ..... .-...++++.|.+++.+++.+ .+|.+ +|..+.+..-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNR-ASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecC-CCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 34456677 77777766544333334432110 11122 234568999999998887755 56654 4444443211
Q ss_pred eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccc--cCCccCEEEEEEeCCCCEEEEEECC
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
....+...... ..+..+.|.+++..++++..|.+.... ..|+...... ..-......+.|.++++.+++| .+
T Consensus 317 ~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~ 390 (398)
T PLN00033 317 DFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND 390 (398)
T ss_pred ceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence 11111111111 247889999999999999888776654 4444433222 2225678899998888777755 78
Q ss_pred CcEEEE
Q 001396 994 GTLSIH 999 (1086)
Q Consensus 994 g~v~vW 999 (1086)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877654
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=3.6 Score=44.36 Aligned_cols=142 Identities=8% Similarity=0.030 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--e-eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Q 001396 840 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 916 (1086)
Q Consensus 840 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~ 916 (1086)
.+.+-|.. .++.|.+. ..|.+.=|-.... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 35566664 34444433 3444555554422 1 222222356799999999999999999999999999986544222
Q ss_pred eeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEE
Q 001396 917 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 988 (1086)
Q Consensus 917 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 988 (1086)
........+. ..|....|+.. .-+|...+..+.+|..............|...|.--.|.++-+.++
T Consensus 103 ~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 EYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 1111111121 24778888776 6666666667777776544333333556777787778888876544
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.03 E-value=13 Score=38.65 Aligned_cols=243 Identities=11% Similarity=0.094 Sum_probs=118.2
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCC-------Ceeeeccc-----cccceeeeEEccCCCceeccccCCeeeecC
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~-----~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
-+.++++|.+.+-++....+...+||.... ..+..+.. .....+.+.|+..... .+..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F----------~vt~ 94 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF----------VVSG 94 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce----------EEcC
Confidence 478999999988888888899999998621 11111111 0112333333322211 1111
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccc-cccCCcccccceEEEEEe--cCCceEEEee-ccceeEEeeccCCcc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LLLPSKVKANKISRLTYN--NGGQAIFALA-SNGVHLMWRWPRNDL 762 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~s--~~g~~l~~~~-~dg~i~vw~~~~~~~ 762 (1086)
........++.+++||+|.-|............ +.+.......--..+++. ..+.+|.++. .+++|.|+|-.-...
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 111122346788999999999965433310000 111111112222344444 3345555543 368888887544332
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-eCCeEEEEEccCceEEEEEcC--CCCC
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMP--PSPT 839 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~ 839 (1086)
...+...... +..+.... .+...+..--|+-..-.++++.=+.+ .-|.|-+||+. |..++++.. .-..
T Consensus 175 ~~~g~F~DP~------iPagyAPF--nIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNa 245 (336)
T TIGR03118 175 PLPGSFIDPA------LPAGYAPF--NVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNA 245 (336)
T ss_pred cCCCCccCCC------CCCCCCCc--ceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccC
Confidence 2222211100 00000000 00000000001111111222111112 23679999985 777777642 2234
Q ss_pred eEEEEEcC-----CCCCEEEEEeCCCeEEEEEcCCceeEEEecccc
Q 001396 840 ATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 880 (1086)
Q Consensus 840 i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 880 (1086)
-..|+..| -.+.+|+---.||+|..+|..+++.+..+..-.
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 45566544 257788877789999999999999888777533
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.87 E-value=11 Score=39.91 Aligned_cols=169 Identities=9% Similarity=0.056 Sum_probs=95.2
Q ss_pred eEEEEEccCceEEEEEcCC------CCCeEEEEEcCCCC----CEEEEEe-CCCeEEEEEcCCceeEEEecccc------
Q 001396 818 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGHS------ 880 (1086)
Q Consensus 818 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~------ 880 (1086)
+|.+||+.+.+.++++.-+ .+....+.+...++ .++.... ..+.|.|+|+.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999988876432 34567787766222 2444433 33589999999987655443321
Q ss_pred -------------CCeEEEEEeC---CCCEEEEEeCCCcEEEEECCCCceee-----ee----eeeccCCCccCCCCceE
Q 001396 881 -------------KRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQT-----CR----SLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 881 -------------~~v~~l~~sp---dg~~l~s~s~dg~i~iwd~~~~~~~~-----~~----~~~~~~~~~~~~~~v~~ 935 (1086)
+.+..++.+| ||++|....-.+ -++|.+.+..... .. .++...... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~---~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG---SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccC---CCCce
Confidence 2356666665 666666655443 3455544311110 00 011110000 13567
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCcc---ceeccc-cCC-ccCEEEEEEeC--CCCEEEEE
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQATFSC--DCRMVFTS 990 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~l~fs~--dg~~l~s~ 990 (1086)
++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..+.+.+ +|.+.+.+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 899999998888 688899999988621 111111 122 45788899988 77766655
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=9.3 Score=44.38 Aligned_cols=185 Identities=10% Similarity=0.096 Sum_probs=96.1
Q ss_pred CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE---EecCCCCceEEEEEecC
Q 001396 458 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 458 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d 534 (1086)
--.|+|++ .+|+.+.++.-..+.+..+.|+ +.+.|+....+|++++|++-...... ........|..+.|..+
T Consensus 63 ~~~I~If~-~sG~lL~~~~w~~~~lI~mgWs---~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFN-ISGQLLGRILWKHGELIGMGWS---DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEe-ccccchHHHHhcCCCeeeeccc---CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 34588888 5777776654444477778885 33579999999999999875433222 11223334655666666
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEe--cCCC-EEEEEECCCc--EEEEEcCCCeeEEE
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKD-QILAAGDDHV--IKIWDMNKVQLLTT 609 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~s~dg~--i~iwd~~~~~~~~~ 609 (1086)
|-.+.+.+ +++.+-+-......+++..-. .......+|. +++. ..+...-+-. ..+...... ..+.
T Consensus 139 GVavlt~~------g~v~~i~~~~~~~~~~~~diP--~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-~~q~ 209 (829)
T KOG2280|consen 139 GVAVLTVS------GQVILINGVEEPKLRKMPDIP--YNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-RVQL 209 (829)
T ss_pred ceEEEecC------CcEEEEcCCCcchhhhCCCCC--CccCCCcceeEecCCCcceeEEeechhhhhcccceecc-cccc
Confidence 65555543 234443322222223333211 0111112221 2211 1111111100 011111111 0111
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
.........+..++.||+.++|+.-..+|.|.+-+.+..+.+..+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111122457789999999999999999999998888666554444
No 447
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.71 E-value=13 Score=37.78 Aligned_cols=192 Identities=12% Similarity=0.105 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q 001396 840 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 840 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 919 (1086)
-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+...
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--- 138 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--- 138 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE---
Confidence 45677788 88888888888889889999998776666666667778889999888875444 35555555555332
Q ss_pred eeccCCCccCCCCceEEEEecCCCEEEEEeC----------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEE
Q 001396 920 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s 989 (1086)
.+.+..+.. .......|.++|.+-+++.. +.|++|+... ......+|..|||+..++
T Consensus 139 f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 139 FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEEE
Confidence 333333322 46788999999999888533 3455665432 345567899999998888
Q ss_pred EECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 990 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 990 ~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.-.+..|..-|-.++... .+.....+... ...+-.+|+ +..-++....|.++.+|.+...
T Consensus 206 slagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 206 SLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred eccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc
Confidence 777777777776666222 22211111111 123345563 6777777777888888776544
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=92.62 E-value=5.8 Score=46.00 Aligned_cols=185 Identities=11% Similarity=-0.042 Sum_probs=92.9
Q ss_pred cCCCEEEEEe-C-----CeEEEEEccCceEEE--EEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcee--E
Q 001396 806 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV--I 873 (1086)
Q Consensus 806 ~dg~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~--~ 873 (1086)
.++..+++|+ + ..+..||..+.+-.. .+....... +++ .- ++++.++|+.++ .+..||..+++- +
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455555554 2 247778877654322 222111122 222 23 778888888643 678888765532 2
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
..+....... .+..-+|+..+.||.++ .+..||..+..-.. ....... .-...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~---~~~m~~~-----r~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF---GPSTYYP-----HYKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe---CCCCCCc-----cccceEEEECCEEEEEC--
Confidence 2232111111 22233788888888654 46788877654222 2111111 11122334566666665
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECC-----CcEEEEEcCCCce
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1006 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~D-----g~v~vWd~~~~~~ 1006 (1086)
|.+.+||..+++....-...+...-.++ ..-+|+..+.||.+ .+|..||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 3577888877654322111111111122 23477788888765 3466666665544
No 449
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.60 E-value=3.1 Score=46.27 Aligned_cols=151 Identities=14% Similarity=0.051 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCCEEEEEe-----------CCC-eEEEEEcCC--ce--eEEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 001396 838 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD 901 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~v~~l~~spdg~~l~s~s~d 901 (1086)
.....++|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4557889998 788777642 223 777776543 22 223443334456889999998 555 3444
Q ss_pred CcEEEEECCCCc-e--eeeeeeeccCCC-ccCCCCceEEEEecCCCEEEE-EeC-------------------CeEEEEE
Q 001396 902 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE 957 (1086)
Q Consensus 902 g~i~iwd~~~~~-~--~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~i~vwd 957 (1086)
...++.|.+... . .....+..+... .........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433344554321 1 111222322221 001124678999999988776 411 3455555
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
..+++. ..+..+ -.....++|+++|.++++-..+
T Consensus 171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeE-EEEecC-cCCCccceECCCCCEEEEccCC
Confidence 554432 222333 3445689999999887765433
No 450
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.50 E-value=17 Score=40.65 Aligned_cols=201 Identities=12% Similarity=0.012 Sum_probs=105.1
Q ss_pred eecCCCEEEEEeCCeEEEEEccCceEEEEEcCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-
Q 001396 804 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 880 (1086)
Q Consensus 804 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 880 (1086)
..-|++.++...+|.|.-.|..+++.+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4446666666667888888888888765444332 3333334444 565 6668889999999998999888777555
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe--CCeEEEEEc
Q 001396 881 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 958 (1086)
Q Consensus 881 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~i~vwd~ 958 (1086)
-.+..-..-.++..++ .+.++.+.-.+-.+++..-.......... .+..--...++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222333222 22566666666665553221111110000 011111133333333333 445666677
Q ss_pred CCccceeccccCC---ccCEEEEEEeC-----CCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 959 EELTCLKQWFPIS---SVPISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 959 ~~~~~~~~~~~~h---~~~v~~l~fs~-----dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
.+|...-.....+ ...+....... .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 6666554421111 11110011111 112235666778888889999999888774
No 451
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.45 E-value=32 Score=41.86 Aligned_cols=119 Identities=13% Similarity=-0.041 Sum_probs=77.4
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC-ceeeeeccc
Q 001396 936 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1013 (1086)
Q Consensus 936 ~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~ 1013 (1086)
.|+-|-..+++++....+++||+...+.++.....+ ...|+++++ .+..+++|...-.|.++..+.. +.+-.+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-- 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-- 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe--
Confidence 566677778888888999999998888777655444 566777765 3456777766556665555433 2332333
Q ss_pred cccCCCCccCcc--cceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCCCCCCccc
Q 001396 1014 AYLRPTTSCLHV--YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068 (1086)
Q Consensus 1014 ~~~~~~~~~~~~--~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~p~~ 1068 (1086)
++++ +..++.+- |-+.+|.|+.=|.+.+-.++..-.+.....|.+
T Consensus 1015 --------dD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~ 1061 (1205)
T KOG1898|consen 1015 --------DDPVPRHVTALELL--DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTE 1061 (1205)
T ss_pred --------CCCccceeeEEEEe--cCCceeeccccCcEEEEECCCcchhhhccCCcc
Confidence 1222 12233332 567899999999999999987665555555555
No 452
>PHA02790 Kelch-like protein; Provisional
Probab=91.66 E-value=7.5 Score=45.04 Aligned_cols=148 Identities=9% Similarity=-0.028 Sum_probs=72.3
Q ss_pred CccEEEEEEcC--CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 492 NIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 492 ~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
++...+.|+.+ ..+..||..+.+=..............+..-+|+..+.||.++. ...+..||..+.+....-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 55666777654 35677776543222111111112122233346776677665332 3567889988765543211111
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CcEEEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 644 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~ 644 (1086)
.......+ .-++...+.| |.+.+||..+++-...-...... ...-+..-+++..++|+.+ ..+..||
T Consensus 397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 01111122 2344444444 35778998877655433322211 1222223357777777754 3466777
Q ss_pred CCCC
Q 001396 645 TPES 648 (1086)
Q Consensus 645 ~~~~ 648 (1086)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6655
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.48 E-value=0.13 Score=59.35 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=100.4
Q ss_pred CeEEEEEcc--CceEEEE-----EcCCCCCeEEEE---EcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEE
Q 001396 817 GVISLYIVM--TFKTILT-----IMPPSPTATSLA---FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 886 (1086)
Q Consensus 817 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~---~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l 886 (1086)
|.+.||++. .|+.... .......+.-+. |-+ +.-++..+..++.|++....+... ..+.+|...++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 678888875 3433222 222233333344 444 556777888889999887765433 4455687766654
Q ss_pred E-----------EeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC-------CE--EE
Q 001396 887 V-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------TR--FL 946 (1086)
Q Consensus 887 ~-----------~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-------~~--l~ 946 (1086)
+ .||||+.+|.++.||.++.|.+.-......+++..-+.|.. .+-.|.-|...- .+ ++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 4 58999999999999999999875333333344443333332 122222244332 22 22
Q ss_pred EEeC--CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCE------------EEEEECCCcEEEEEcCC
Q 001396 947 LVHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM------------VFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 947 ~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~------------l~s~~~Dg~v~vWd~~~ 1003 (1086)
++.| ..+++|.....+|+.... ...|..+. -+||+. +++.+.|++|.+|.-..
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 3333 458999887777763222 22333333 333331 23455677888886443
No 454
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.37 E-value=29 Score=39.17 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
..+|.++.+...|. +-+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 47889999998885 45677888 788888887655421 112335777777777776 66677554 77777555
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.20 E-value=8 Score=34.73 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=67.7
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeee---eeeeeeeccccceeeeeeeecCCCccEEEEEECC-----CCCE
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSL 404 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~ 404 (1086)
.-.|..... -|++++.-|.|.|.+......... ..++ +-.-...|++++-.+ +...
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCE
Confidence 345555555 478888889999999875432211 0111 112335677776443 3456
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC--cEEEEEEeCCCcEEEEeCCCCc
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~--~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
|+.|+.. .+..||+.....+. ++.-.+.|.++.+-.-+. ..+++.|+ ...|.-+|.+..+
T Consensus 67 LliGt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 67 LLIGTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNE 128 (136)
T ss_pred EEEeccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcE
Confidence 7777554 59999999876554 334456677777732211 11444444 7788888854333
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.20 E-value=0.71 Score=49.31 Aligned_cols=158 Identities=9% Similarity=0.085 Sum_probs=97.4
Q ss_pred CCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEE-EE-cCCCC----CeE-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001396 795 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TI-MPPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 866 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~-~~-~~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d 866 (1086)
....+..+-..|||+.+.+-+...+.++++.+..... ++ ....+ .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567788899999999999888889999886543221 11 11122 122 222233 67778889999988877 4
Q ss_pred cCCc-e----eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 867 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 867 ~~~~-~----~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
+..+ + .++.++-...++..+.--.+.+-+++-+..|++.++.-...+. ...+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhhh------cCcceeeeCcc
Confidence 4332 1 1222222223333333333446677888888888776544221 1111111 13678999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcc
Q 001396 942 QTRFLLVHETHLAIYEAEELT 962 (1086)
Q Consensus 942 g~~l~~~~d~~i~vwd~~~~~ 962 (1086)
+.+|++-..|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999887543
No 457
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=2.3 Score=51.30 Aligned_cols=147 Identities=11% Similarity=0.035 Sum_probs=91.0
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-----EEeecC------CcceEEEeecccCCccEEEEEEcCCeE
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKI 505 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-----~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg~i 505 (1086)
++..+...+|+....++..+.+-.|..||+++-..- .-|..| .....++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566677777877545666666668899998753211 111111 22334455655432 245667788888
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc-CCceEEEEEecCC
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 584 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 584 (1086)
++..+........--.-....++++|+|.|+.++.|-. .+++.-|-. +.+....+.+.... ...|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence 88866544433333334457899999999999999865 556666653 34444444443322 3679999998877
Q ss_pred CEEEE
Q 001396 585 DQILA 589 (1086)
Q Consensus 585 ~~l~~ 589 (1086)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77665
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.84 E-value=0.27 Score=56.96 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCcee-EEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCC--CceeeeeeeeccCCCccCCCCce
Q 001396 859 DSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 859 dg~v~iwd~~~~~~-~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
.+.+++-+..+.-. ...++|..+.|-.+.|..-. ..++ -.-|.+.||+++- |+......+............|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 35567666654321 13345677778888885321 1111 2346789999863 44433333332222222113455
Q ss_pred EEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEE-----------EeCCCCEEEEEECCCcEEEEEcC
Q 001396 935 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~-----------fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
.+-|-+...++..+ .++.+++..+.+... .++.+|..+++.++ .||||+.+++++.||.+++|...
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 55556666666665 445666665554333 44556877776665 48999999999999999999864
Q ss_pred -CCceeeeeccccccCCC
Q 001396 1003 -NLEVQCRILSTAYLRPT 1019 (1086)
Q Consensus 1003 -~~~~~~~~~~~~~~~~~ 1019 (1086)
+|....+.. +.|.|+.
T Consensus 266 i~g~~~~rcl-hewkphd 282 (1283)
T KOG1916|consen 266 ITGKIVHRCL-HEWKPHD 282 (1283)
T ss_pred eeccccHhhh-hccCCCC
Confidence 343332322 4455554
No 459
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.84 E-value=22 Score=37.77 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=89.6
Q ss_pred cEEEEeCCCCceeEEeecC------CcceEEEeecccCC----ccEEEEEEcCCeEEEEEcCCCceeEEecCCC------
Q 001396 460 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 523 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------ 523 (1086)
.|.+||+.+++.++++.-. .+.+..+.+...+. +...++-+..+-|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778899999988776432 45567777755332 3344455556789999998877655433211
Q ss_pred -------------CceEEEEEec---CCCEEEEEeeCCCCceeEEEEeCCCC-----e---------eeeEEecccccCC
Q 001396 524 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEG-----A---------IKRTYQGLQLQHN 573 (1086)
Q Consensus 524 -------------~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~-----~---------~~~~~~~~~~~~~ 573 (1086)
..+..++.+| +++.|....-++ -.+|.+.+. . .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1244555554 555665543211 122222211 0 01111 111 13
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEEcCCC---eeEEEE-cCCCCCCCCceEEEec--CCCEEEEE
Q 001396 574 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTI-DAGGGLPENPRICFNK--NGTLLAVI 634 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~v~~s~--~~~~l~~~ 634 (1086)
....++++++|..+++--..+.|..|+..+. +....+ ........+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 5567888999888888889999999998861 112222 2222234556777777 55544443
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.72 E-value=0.63 Score=32.11 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCceEeeecCCCc--eEEEEEeccCcEEEEecCCC
Q 001396 329 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG 361 (1086)
Q Consensus 329 ~~V~~~~~spdg~--~lla~gs~dg~v~iwd~~~~ 361 (1086)
+.|.+|+|||+.. -||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997543 47888888899999999864
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.69 E-value=32 Score=38.39 Aligned_cols=150 Identities=9% Similarity=-0.009 Sum_probs=83.4
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCcc
Q 001396 883 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 962 (1086)
Q Consensus 883 v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~ 962 (1086)
...+..++||.+++.+..-..++-||-.... ...+..... ..+..+.|.++|..++++..|.+.. ....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888777765543333334432200 111222211 2588999999999999887777544 334443
Q ss_pred -----ceeccccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 963 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 963 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
........ ....+.++.|.+|+..+++ +.+|.+.... +.|+.-.+.......+. ..| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12211111 1345899999988876664 5788776654 44443222221111111 233 677765
Q ss_pred CCEEEEEeCCCcEEEE
Q 001396 1037 PTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 1037 ~~~l~~~~~dg~v~vw 1052 (1086)
.+...+.+.+|.|..|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3567777888887765
No 462
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.45 E-value=0.94 Score=31.27 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.7
Q ss_pred ccEEEEEECCCC---CEEEEEeCCCEEEEEEecCC
Q 001396 391 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG 422 (1086)
Q Consensus 391 ~~V~~l~~spdg---~~las~~~d~~i~iwd~~~~ 422 (1086)
+.|.++.|||+. .+||.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999863
No 463
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.36 E-value=28 Score=38.96 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=19.8
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 596 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+.+||+.+.+-...-..+.. .....+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654322221111 11223444456777777653
No 464
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.35 E-value=43 Score=39.28 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=62.5
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCce--eEEecCC-CCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~-~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
..++..++.+..+|.+....+..... ....-+. .....++++..+| .+++.|+.. |++.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence 45667899999999998887766442 2222222 3445666766665 466666653 4788888886666777777
Q ss_pred ecccccCCceEEEEEecC----CC------EEEEEE---CCCcEEEEE
Q 001396 566 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD 600 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~----~~------~l~~~s---~dg~i~iwd 600 (1086)
... ++|..+++.+. .. .+++++ .+|.+++..
T Consensus 297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 664 48888887532 22 566654 466777764
No 465
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=12 Score=36.20 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=60.9
Q ss_pred CCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEE--EEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccC
Q 001396 807 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATS--LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 881 (1086)
Q Consensus 807 dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~--l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 881 (1086)
+|.++.+.+ ...|++||+.+++.+..-.-....+.. +.-. +..+.+-.-.+|.-..+|..+.+++..+. -.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 455666554 356999999999887765433222211 1111 33455556678899999999988877665 233
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 882 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 882 ~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
.=+.++ .|++.|+.++...+++.-|-++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 334443 3666677665555666655544
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.19 E-value=32 Score=37.53 Aligned_cols=71 Identities=7% Similarity=-0.095 Sum_probs=35.9
Q ss_pred CccEEEEEEcC-----CeEEEEEcCCCceeEEecCC-CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 492 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 492 ~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
++.+.+.|+.. ..+..||+.+.+=...-... .......+...+++..+.|+.+......+..||+.+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 35677776654322211111 1122233344567777777653322234678898876543
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.12 E-value=13 Score=40.40 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--eeE-----EEeccccC--------CeEEEEEeCCCCE
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALNI 894 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~v~~l~~spdg~~ 894 (1086)
+.+..+.+.++++++ ++.+++|. +..+++.. + ..+ ..+..-.+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~~~-~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRF-YAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEE-EEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 567788888635544 44566666 66555543 1 111 11111111 3347888889988
Q ss_pred EEEEeCC------CcEEEEECCCCceeeeeeeeccC-------CCccCCCCceEEEEecCCCEEEEE------eCC----
Q 001396 895 LVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET---- 951 (1086)
Q Consensus 895 l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~---- 951 (1086)
+++.=.+ ..|+.++.+ +.......+...- ........+.+++++|||+.|.+. .|+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887666 778888776 3332211111110 112223578999999999955442 222
Q ss_pred -------eEEEEEcCC-ccceeccc--cC------CccCEEEEEEeCCCCEEEEEE-----CCCcEEEEEcC
Q 001396 952 -------HLAIYEAEE-LTCLKQWF--PI------SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1002 (1086)
Q Consensus 952 -------~i~vwd~~~-~~~~~~~~--~~------h~~~v~~l~fs~dg~~l~s~~-----~Dg~v~vWd~~ 1002 (1086)
.+..||..+ +....++. .. ....|+.+.+-+|+++|+-== ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 234455554 32222221 11 357899999999999776321 23345555544
No 468
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.02 E-value=9.8 Score=44.96 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=93.5
Q ss_pred CCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEE
Q 001396 808 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 887 (1086)
Q Consensus 808 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~ 887 (1086)
+.+++++..+.|.||+........ ...++..+...| ... ...|+.+..|. ..|. |..|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~~--~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EFT--STPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---ccc--ccccccccCCC----------CCce--eeEEE
Confidence 788888999999999986432211 011112222222 111 12233333332 1121 33332
Q ss_pred Ee--CCCCEEEEEeCCCcEEEEECCCCc-----e----e--eeeeeeccCCCccCCCCceEEEEe--cCCCEEEEEeC-C
Q 001396 888 FS--DALNILVSSGGDAQIFVWDVDGWG-----I----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHE-T 951 (1086)
Q Consensus 888 ~s--pdg~~l~s~s~dg~i~iwd~~~~~-----~----~--~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~d-~ 951 (1086)
.. -+...|+.+.+||.|.+|.++.-. . . ..+..-.+.-+........++++. ...++||++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 244678888888888888653200 0 0 000000011111112457889998 88888988755 4
Q ss_pred eEEEEEcCCc--cceeccccCCccCEEEEEEeCCC---C---EEEEEECCCcEEEEEcC
Q 001396 952 HLAIYEAEEL--TCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 952 ~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg---~---~l~s~~~Dg~v~vWd~~ 1002 (1086)
.|.||-.... +....-...|...|.+|.|-++. . +|++++-.|.+-+|++.
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 5666655432 22111112357789999997744 2 78889999999998873
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.57 E-value=39 Score=37.69 Aligned_cols=197 Identities=16% Similarity=0.118 Sum_probs=104.2
Q ss_pred EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc-ceEEE
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVYSL 485 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~ 485 (1086)
.+..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+..-
T Consensus 73 ~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 73 VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3356777777777776533211111 1112222233333776 67788899999999889999887765551 11111
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC---CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+ ..+ ..++.++.++.+...+..++.......... ..+..-....++...+ +..+ . ++.+.-.|..+|...
T Consensus 149 ~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~-~~~~-~-~~~~~a~~~~~G~~~ 222 (370)
T COG1520 149 PV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV-GSDG-Y-DGILYALNAEDGTLK 222 (370)
T ss_pred cE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE-ecCC-C-cceEEEEEccCCcEe
Confidence 11 112 244455577888888887777766544432 1111111122333333 3221 1 335777788788776
Q ss_pred eEEecccccC-CceEEEEEec-----CCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 563 RTYQGLQLQH-NSVSVVHFDT-----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 563 ~~~~~~~~~~-~~v~~~~~~~-----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
-......... ..+....... .+..++.++.++.+...|..+++.+......
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 5543222000 0110000000 1223456777888999999999999888754
No 470
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.50 E-value=1.2 Score=30.28 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=22.8
Q ss_pred ccCCCCceEeeecCCCceEEEEEecc--CcEEEE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 356 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~d--g~v~iw 356 (1086)
......-....|||||++|+.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34445678899999999887777777 666665
No 471
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=11 Score=36.40 Aligned_cols=177 Identities=11% Similarity=0.088 Sum_probs=95.0
Q ss_pred CCCEEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 401 DGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 401 dg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|.++.+.+. ...|++||+.+|+.+... .+. ...+..=-...-|...+.++ -.+|...++|..+-+++..+. .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~-~l~--~~~~FgEGit~~gd~~y~LT-w~egvaf~~d~~t~~~lg~~~-y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSE-KLA--PDTVFGEGITKLGDYFYQLT-WKEGVAFKYDADTLEELGRFS-Y 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEe-ecC--CccccccceeeccceEEEEE-eccceeEEEChHHhhhhcccc-c
Confidence 5566666644 346999999998765422 121 11111111122233323333 358888899998888887664 3
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCce---EEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGC---TRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i---~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.=+.++. |+..|+.+....+++.-|..+....... ...+.+| +.+.| -||...+-.-. ...|..
T Consensus 130 ~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~----t~~I~r 200 (262)
T COG3823 130 EGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQ----TTRIAR 200 (262)
T ss_pred CCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeee----ecceEE
Confidence 333444542 4456777777777777666554433221 1122222 22333 24444443322 223666
Q ss_pred EeCCCCeeeeEEeccc---------ccCCceEEEEEecCCCEEEEEE
Q 001396 554 WNESEGAIKRTYQGLQ---------LQHNSVSVVHFDTAKDQILAAG 591 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~s 591 (1086)
.|.++|+.+..+.... .+.+-.+.+++.|++..++..+
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6777777665543221 1234677889999886665544
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=25 Score=43.95 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=100.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEE--------eCCCCEEEEEeCCCcEEEEECCCCceeeeee-
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS- 919 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~--------spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~- 919 (1086)
=++..+| -|+.+.+|++.++.....+.+-...|..+.. -|.=++|...+.--.|.|+-+.-.+......
T Consensus 90 I~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 90 IGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred hcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 4555443 4788999999998877888877777776654 3344566666666668887665433221111
Q ss_pred ----eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc--CCc---c-ce----------------eccccCCcc
Q 001396 920 ----LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA--EEL---T-CL----------------KQWFPISSV 973 (1086)
Q Consensus 920 ----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~--~~~---~-~~----------------~~~~~~h~~ 973 (1086)
++.... ...|.++....+|+.+.+|.||.++=.-. ..| + |. .++...+..
T Consensus 168 f~~~~~i~~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTSFKISVD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccceeeecC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 111111 13588899899999999999985442222 211 0 11 111124577
Q ss_pred CEEEEEEeCCCCEEEEEECCCcEEEEEcCC-Cceeeee
Q 001396 974 PISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI 1010 (1086)
Q Consensus 974 ~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~-~~~~~~~ 1010 (1086)
+|..+.....-..+.+-+..|+|++|++.. |....++
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~ 281 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRF 281 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceee
Confidence 999999988878899999999999999987 5444443
No 473
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.14 E-value=28 Score=35.44 Aligned_cols=167 Identities=8% Similarity=0.062 Sum_probs=92.5
Q ss_pred eeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC-CCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001396 785 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTIL 863 (1086)
Q Consensus 785 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~ 863 (1086)
...+.++............|.++|.+-.++..|.---.|-.+ ..+..+.. ....-..++..| +|.+.++.-.+..|-
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaia 213 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIA 213 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccccceE
Confidence 334444443356677889999999999988643211111111 11222222 223456788889 787777777777787
Q ss_pred EEEcCCce--eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 864 IYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 864 iwd~~~~~--~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
..|..++. .+..-.+....-..+.-+|.|+.-+|....+.+.-+|-.... ....+.+.... .-.++.....
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~a----rpys~rVD~~ 286 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSKA----RPYSMRVDRH 286 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---ceeeeCCCCCC----CcceeeeccC
Confidence 77776662 222222212234455667788888887777777777766522 12222222111 3445666666
Q ss_pred CCEEEE-EeCCeEEEEEcCC
Q 001396 942 QTRFLL-VHETHLAIYEAEE 960 (1086)
Q Consensus 942 g~~l~~-~~d~~i~vwd~~~ 960 (1086)
|+.-++ ...+.|.-+|..+
T Consensus 287 grVW~sea~agai~rfdpet 306 (353)
T COG4257 287 GRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CcEEeeccccCceeecCccc
Confidence 665554 3445566666544
No 474
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.92 E-value=57 Score=42.20 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=89.1
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.|-..++.|.-+|+|.+ +=. .|+.++.||..++ .|.+. -..-...++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~---------~Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTA---------RWKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCe-EEe--ecCceeeeccccc---------eecCC----------CCcccchhhhhcccCCCceE
Confidence 46667788888888875 322 5678888887654 23311 11123456666666677766
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC------ce--eEEeec
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 477 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~------~~--~~~~~~ 477 (1086)
| =+.+ .|-|+..+.... ..-..+.+...+++|.- .+.++-....+.+|++... +. ...+.+
T Consensus 418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2222 244555543211 22345778888999983 3667776667799998754 11 122233
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
-.....++.++ ++ .|+++..+|.++.=++..
T Consensus 487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 33345566663 23 688899999888776654
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.56 E-value=49 Score=37.48 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.0
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
+...-+..+.|+|.|||+ +|++--..|.|++++..++.......+. .............|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~------------~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP------------EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC------------ceeccCCCCceeeEEECCCc
Confidence 344445789999999997 5666544699999986655422111110 00011135778899999884
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.40 E-value=2.2 Score=41.34 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.7
Q ss_pred ccEEEEEECCCC------CEEEEEeCCCEEEEEEecC
Q 001396 391 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 391 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~ 421 (1086)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 4788889999999998664
No 477
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.23 E-value=17 Score=40.19 Aligned_cols=149 Identities=9% Similarity=0.057 Sum_probs=90.3
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC------CccEEEEEEcCCeEEEEEcCCCc
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG 514 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~~ 514 (1086)
+-...+...+++..|+....++-.|++.|+.+..+..|...| +.+.|.. +.+.|+ |-.+..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 333434444567778888889999999999999998887763 3443322 122344 4444445445555443
Q ss_pred eeEEecCCCC-----ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE
Q 001396 515 ARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 515 ~~~~~~~~~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
.......... ...+..- ....++++++. .|-|++||.-..+....+.+.. ..|..+..+.+|+++++
T Consensus 549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~----kGDirLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ila 620 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASR----KGDIRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILA 620 (776)
T ss_pred Cceeeeeehhcccccccccccc-ccCceEEEecC----CCceeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEE
Confidence 2222111111 1222222 34457888776 4459999966555555566655 78999999999999988
Q ss_pred EECCCcEEEEEc
Q 001396 590 AGDDHVIKIWDM 601 (1086)
Q Consensus 590 ~s~dg~i~iwd~ 601 (1086)
.+. ..+.+-|+
T Consensus 621 TCk-~yllL~d~ 631 (776)
T COG5167 621 TCK-NYLLLTDV 631 (776)
T ss_pred eec-ceEEEEec
Confidence 775 34555554
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.69 E-value=12 Score=42.12 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=62.2
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC------CEEEE--Ee-
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLL--VH- 949 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg------~~l~~--~~- 949 (1086)
.-...+.|+|.|||++|++--..|.|++++-.++.......+..... ....+....|+|+|+- .+|.+ +.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 34457889999999888876556999999865543221111111100 0012468899999884 34433 21
Q ss_pred --------CCeEEEEEcCCc--cc--eecccc----CCccCEEEEEEeCCCCEEEEEECC
Q 001396 950 --------ETHLAIYEAEEL--TC--LKQWFP----ISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 950 --------d~~i~vwd~~~~--~~--~~~~~~----~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
...|.-|.+... .. ...++. .....-..|+|.|||.++++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223544554321 11 111111 112234567899999877766654
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.58 E-value=10 Score=47.75 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=47.6
Q ss_pred CceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCce
Q 001396 932 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 932 ~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~ 1006 (1086)
.+.+..+...+..+.....+.+-+|+.........+...+... +.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 4455555555665655666667777766554444433322222 88999999999999999999999866
No 480
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.52 E-value=46 Score=36.23 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=55.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcee-eeeeeeccCCCccCCCCceEEEEecCCCEEEEEe------CCeEEEEEc
Q 001396 891 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 958 (1086)
Q Consensus 891 dg~~l~s~s~dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~------d~~i~vwd~ 958 (1086)
++++++.|+.++ .+..+|+.+.... ....+..+... .-...+..-++++.+.+. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777643 4666777664421 11111111110 111222234566656542 245888998
Q ss_pred CCccceeccccCCccCEEEEEEeCCCCEEEEEECCCc----EEEEEcCCCcee
Q 001396 959 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ 1007 (1086)
Q Consensus 959 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~----v~vWd~~~~~~~ 1007 (1086)
.+.+....-......+....+...++++.+.||.++. +.+||..+.+..
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 8765433211111122233334557788888887643 567887776553
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.36 E-value=7.7 Score=48.09 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=101.1
Q ss_pred ccCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 312 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 312 ~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
.+..+|...+..+. |...=..+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-+.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 34556766655555 4434444555554433 2335679999999999665543 334444
Q ss_pred cEEEEEE--------CCCCCEEEEEeCCCEEEEEEecCCCccccceEec------cccccEeEEEecCCCCcEEEEEEeC
Q 001396 392 SVNRVVW--------SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 392 ~V~~l~~--------spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
.|..|.. -|.=++|.....--.|.|+-+.-.+.......+. ...-.|.|+....+|+ .+. +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 5555443 3344555555555567777665433222111222 2245789999888888 555 455
Q ss_pred CCcEEEEeC----CCC---c-e----------------eEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 458 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 458 d~~i~iwd~----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
|| .+|.+ ..| + + +-.+. .+..+|..+.+. .....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 66 44432 211 1 1 11223 467789999884 3446899999999999999876
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.34 E-value=0.1 Score=56.26 Aligned_cols=242 Identities=17% Similarity=0.138 Sum_probs=136.2
Q ss_pred EEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEE
Q 001396 733 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 812 (1086)
Q Consensus 733 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 812 (1086)
...+.+.+..++.++.+..+..||-.... .... ........+++..++..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 44566777778888888777777632211 1111 1233445677777777766
Q ss_pred EEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeC
Q 001396 813 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 890 (1086)
Q Consensus 813 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp 890 (1086)
... .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 58899999975432211111111122278999 899999999999999999988777766666999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC-C-CCceEEEEecCCCEEEEEeCCeEEEE-----EcCCccc
Q 001396 891 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL-A-PSETHIQFHKDQTRFLLVHETHLAIY-----EAEELTC 963 (1086)
Q Consensus 891 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~s~dg~~l~~~~d~~i~vw-----d~~~~~~ 963 (1086)
.+ +.+.++.|..+.+-...+..... ....+.... . .-+..=.|..-|..+...-.+.+.+. ..+....
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccc
Confidence 86 55666667655443333211111 011111100 0 00111122333444443222221111 1111111
Q ss_pred eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 964 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 964 ~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
+ . +....+.+.++.|--||..+ -+..-|.|.+-.+.++++.+.|.
T Consensus 245 l-~-fq~~~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 245 L-Q-FQEKYGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred e-E-eeecCCceeEEEEecccccc-ccccceeEEEEeccchHHHHHHH
Confidence 1 1 22235677788888887544 36666777777788887776655
No 483
>PLN02193 nitrile-specifier protein
Probab=87.13 E-value=65 Score=37.29 Aligned_cols=154 Identities=10% Similarity=-0.037 Sum_probs=72.2
Q ss_pred EEEEEeCC-----CcEEEEeCCCCceeEEeecC--Ccce--EEEeecccCCccEEEEEEcCC-----eEEEEEcCCCcee
Q 001396 451 SVITCGDD-----KTIKVWDAVTGSRTYSFEGH--GAPV--YSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGAR 516 (1086)
Q Consensus 451 ~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h--~~~v--~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~ 516 (1086)
+++.|+.+ +.+.++|+.+.+-...-... ..+. .+++. . ++.+.+.|+.++ .+..||+.+.+=.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55556544 35888898776533211100 0111 11211 1 445666666543 3566776554321
Q ss_pred EEec---CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc-CCceEEEEEecCCCEEEEEEC
Q 001396 517 VDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 517 ~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
.... .........+..-+++..+.++.++.....+.+||+.+.+....-...... .....++ ..-+++.++.|+.
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~ 386 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGE 386 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCc
Confidence 1110 001111111222366777766654332356899999887664432210000 0111222 2234556666664
Q ss_pred C--------------CcEEEEEcCCCeeEE
Q 001396 593 D--------------HVIKIWDMNKVQLLT 608 (1086)
Q Consensus 593 d--------------g~i~iwd~~~~~~~~ 608 (1086)
. ..+.++|+.+.+-..
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWER 416 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEEE
Confidence 2 247888988876543
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.07 E-value=12 Score=38.24 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=84.3
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEecccccCCceEEEEEec
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
.+||+.+.+...........+.+-++-+||+++.+|+. .++...+++++..+ ..........-.....--+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888876655433334445555678899999998875 44677788888654 111111111011112334455668
Q ss_pred CCCEEEEEECCC-cEEEEEcCC-Ce-eEE--EEc---CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 583 AKDQILAAGDDH-VIKIWDMNK-VQ-LLT--TID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 583 ~~~~l~~~s~dg-~i~iwd~~~-~~-~~~--~~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
||+.++.|+... +..+|.... .. ... .+. .......-..+...|+|++++.+..+ -.|||..+++.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999887664 345555422 11 111 111 01111223467788999999888764 456788877665555
Q ss_pred cc
Q 001396 655 GV 656 (1086)
Q Consensus 655 ~~ 656 (1086)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
No 485
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.04 E-value=4.5 Score=40.83 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=56.9
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCccceecc------cc-------CCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
+.+..++.+|++ +.+|.+++||+.+++++... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 446677888777 89999999999988776442 22 3467899999999998887765 688999998
Q ss_pred CCCceeeeec
Q 001396 1002 SNLEVQCRIL 1011 (1086)
Q Consensus 1002 ~~~~~~~~~~ 1011 (1086)
+-+..+.-..
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 8776664443
No 486
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.83 E-value=96 Score=38.99 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=20.9
Q ss_pred hhhhhh-hhhhhcCCCCHHHHHHHHHhhcccc
Q 001396 68 FEIRKQ-NFFEALDGHDIAKALNILKKDLKDF 98 (1086)
Q Consensus 68 ~~i~~q-~~~Ell~~~~~~~A~~~l~~~l~~~ 98 (1086)
|.|-+| -+|+|.-.|...-.|+|+|.-+.|-
T Consensus 80 fTlTR~DG~FDL~vnGg~svtLqF~R~pF~~q 111 (1899)
T KOG4659|consen 80 FTLTREDGYFDLTVNGGRSVTLQFLRTPFQSQ 111 (1899)
T ss_pred EEEEecCceEEEEEcccceEEEEEccCCCccc
Confidence 444333 4788888888778888888665554
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.74 E-value=54 Score=35.98 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=102.4
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec--ccCCccE--EEEEEc-C---CeEEEEEcCCCce-eEEecC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSISV-D---GKIKAWLYDSLGA-RVDYDA 521 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~--l~s~s~-d---g~i~vwd~~~~~~-~~~~~~ 521 (1086)
+++....++-+.+||+ .|+.++.+. .+.++.+.+. ..-+|+. |+.++. + .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777777888999995 566666664 2344444321 1112222 444442 2 5799998864322 222211
Q ss_pred -------CCCceEEEEEe--c-CCCEEEEEeeCCCCceeEEEEeC---CCC----eeeeEEecccccCCceEEEEEecCC
Q 001396 522 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 584 (1086)
Q Consensus 522 -------~~~~i~~~~~s--~-d~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 584 (1086)
....++.+|+- + +|.+.+.... + ++.+..|.+ ..+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 11246677763 3 4555554432 2 334544443 333 457777653 478899999999
Q ss_pred CEEEEEECCCcEEEEEcCC-----CeeEEEEcCCCCCCCCceEEEec--CCC-EEEE-EECCCcEEEEECCCC
Q 001396 585 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--NGT-LLAV-IANENRIKILETPES 648 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~~~-~l~~-~~~dg~i~iw~~~~~ 648 (1086)
.+|+.+-++.-|.-|+.+. +..+.......-...+-.+++-. +++ +|++ .-.+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999998888888762 22232322222234566677643 433 4444 444778999998753
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.07 E-value=3.2 Score=41.96 Aligned_cols=75 Identities=8% Similarity=0.079 Sum_probs=52.7
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeee--eeeccCCCc----cCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCc
Q 001396 888 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR--SLQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 961 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~ 961 (1086)
+..++++|+..+.+|.+++||+.+.+..... ......... .....|..+.++.+|.-+++-.+|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999986643322 111121100 1224689999999999988877888999987644
Q ss_pred c
Q 001396 962 T 962 (1086)
Q Consensus 962 ~ 962 (1086)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 3
No 489
>PRK13613 lipoprotein LpqB; Provisional
Probab=86.03 E-value=58 Score=38.55 Aligned_cols=190 Identities=9% Similarity=0.021 Sum_probs=101.2
Q ss_pred CeeEEEeecCCCEEEEEeC-C-eEEEEEccCceE----EEEEcCCCCCeEEEEEcCCCCCEEEEEeC--CC--eEEEEEc
Q 001396 798 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 867 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~ 867 (1086)
.+..+++|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++. +-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g~-vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RGD-LWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CCC-EEEecCCCCCceEEEEEcC
Confidence 6778999999999887763 3 466655533322 11111 123466677777 453 333322 22 2555543
Q ss_pred CCceeEE-EeccccC-CeEEEEEeCCCCEEEEEeC---CCcEEEEECCC---CceeeeeeeeccCCCccCCCCceEEEEe
Q 001396 868 RSSEVIS-KLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 868 ~~~~~~~-~l~~h~~-~v~~l~~spdg~~l~s~s~---dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
+|+... ......+ .|+.+..|+||-.++.... .++|.|=-+.. +............+. ..+.+++|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 444321 1112333 7999999999988776543 35566555443 221111111111111 248899999
Q ss_pred cCCCEEEEE--eCCeEEEEE--cCCccceeccccCCccCEEEEEEeCCCC-EEEEEECCCcE
Q 001396 940 KDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 996 (1086)
Q Consensus 940 ~dg~~l~~~--~d~~i~vwd--~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~~Dg~v 996 (1086)
.++.+++.+ ..+...+|. +..... .....+.-..+..++-..+.+ .|+.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~-~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTP-PASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCc-ccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999988854 333444444 442222 111122345677777776666 45543555554
No 490
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.90 E-value=20 Score=39.54 Aligned_cols=142 Identities=15% Similarity=0.223 Sum_probs=87.6
Q ss_pred cCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC-------CCCEEEEEeCCCeEEEEEcCC-ceeEEE
Q 001396 806 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK 875 (1086)
Q Consensus 806 ~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~~-~~~~~~ 875 (1086)
.|..++...+ ...+.-.|++.|+.+.....|... -+.|.|+ +.+.|+ |-.+..|.-.|.+- |..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444443 256777889999999888877655 4566662 223444 55565565555442 322222
Q ss_pred eccccCCeEEEEEeC----CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCC
Q 001396 876 LEGHSKRVTGLVFSD----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 951 (1086)
Q Consensus 876 l~~h~~~v~~l~~sp----dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 951 (1086)
-. ....++.-.||. ...++|.+|..|.|++||--.-..++ .++. ....|-.+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP~------lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALPG------LGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCcc------cccceeeeEeecCCcEEEEeecc
Confidence 11 112222223332 34699999999999999976533222 1221 22368899999999999998888
Q ss_pred eEEEEEcC
Q 001396 952 HLAIYEAE 959 (1086)
Q Consensus 952 ~i~vwd~~ 959 (1086)
.+.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 88888875
No 491
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.51 E-value=60 Score=35.37 Aligned_cols=167 Identities=14% Similarity=0.133 Sum_probs=87.8
Q ss_pred ccEEEEEECCCCCEEEEEeCCCE------EEEEEecCCC-cc-----ccceEeccccc--------cEeEEEecCCCCcE
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHI------VQLYAYHGGS-DA-----RQQLEIDAHVG--------NVNDLAFSAPCKQI 450 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~------i~iwd~~~~~-~~-----~~~~~~~~h~~--------~v~~v~~s~d~~~l 450 (1086)
+..+.+.+.|++..+++.+++|. +...++.... .. .....+..-.+ ..-++++.++|.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-- 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence 67889999976666667777776 6666655411 11 11111111111 233677766666
Q ss_pred EEEEEeCC------CcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC
Q 001396 451 SVITCGDD------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 524 (1086)
Q Consensus 451 ~l~s~~~d------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 524 (1086)
++++.-.+ ..|+.++.. |+.+..+..... +.+..++. .-...+.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~------~~~~~~~~-----------------------~~~~~N~ 147 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA------FLPDANGT-----------------------SGRRNNR 147 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccc------cccccCcc-----------------------ccccCCC
Confidence 56655555 566666644 555544421110 00000000 1122445
Q ss_pred ceEEEEEecCCCEEEEEeeCC---CCc---------eeEEEEeCCC-CeeeeEEecccc------cCCceEEEEEecCCC
Q 001396 525 GCTRMAYSANGRRLFSCGTSK---EGE---------SFLVEWNESE-GAIKRTYQGLQL------QHNSVSVVHFDTAKD 585 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~---~~~---------~~i~iwd~~~-~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 585 (1086)
...+++++|||+.|+++.... ++. ..|..+|..+ +.....+.-... ....+..+.+-++++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 678899999999766655432 111 3455666655 333333322211 236788899999988
Q ss_pred EEEE
Q 001396 586 QILA 589 (1086)
Q Consensus 586 ~l~~ 589 (1086)
+++.
T Consensus 228 lLvL 231 (326)
T PF13449_consen 228 LLVL 231 (326)
T ss_pred EEEE
Confidence 6665
No 492
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=84.90 E-value=60 Score=34.86 Aligned_cols=239 Identities=15% Similarity=0.018 Sum_probs=117.0
Q ss_pred cCCCceEEEEEeccCcEEEEecCC--CceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-CCE
Q 001396 337 HPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHI 413 (1086)
Q Consensus 337 spdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~~ 413 (1086)
.-+++ .|+.|+.+|...+. +.. ++..+ -.+...|+++...+.-+.|++-++ ...
T Consensus 10 ~~~~~-~lL~GTe~Gly~~~-~~~~~~~~~k---------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~ 66 (302)
T smart00036 10 TCDGK-WLLVGTEEGLYVLN-ISDQPGTLEK---------------------LIGRRSVTQIWVLEENNVLLMISGKKPQ 66 (302)
T ss_pred ccCCc-EEEEEeCCceEEEE-cccCCCCeEE---------------------ecCcCceEEEEEEhhhCEEEEEeCCcce
Confidence 33444 48888887755444 543 22222 124568999999998887777653 345
Q ss_pred EEEEEecCCCc-----------cccc-eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEe--
Q 001396 414 VQLYAYHGGSD-----------ARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSF-- 475 (1086)
Q Consensus 414 i~iwd~~~~~~-----------~~~~-~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~-- 475 (1086)
++++++..-.. .+.. ...-+|......++.. .++...++.+....+|.++.+... ...+.+
T Consensus 67 L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~ 145 (302)
T smart00036 67 LYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFL 145 (302)
T ss_pred EEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccc
Confidence 99999843221 0000 0111344433334444 233324444555667777644322 111211
Q ss_pred -e-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC--Cc--ee---EEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 476 -E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LG--AR---VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 476 -~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~--~~--~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
. ....++..+..+.......+..|+..+...++++.. .. .. ...........++..-+++.+|++-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~----- 220 (302)
T smart00036 146 FPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY----- 220 (302)
T ss_pred ccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE-----
Confidence 0 112233333333333345677776643334444432 10 00 0011111023333334556666554
Q ss_pred CceeEEEEeCCCCeeee--EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 547 GESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
+......|....+..+ .+. .. ....++++. ..++++-+. ..|.|+++.+++.++.+..
T Consensus 221 -~~~~v~Vn~~G~~~~r~~~l~-w~---~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 221 -DEFGVFVNLYGKRRSRNPILH-WE---FMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred -CcEEEEEeCCCCccccceEEE-cC---CcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 2234444544212211 121 12 345666666 367777665 4599999999999888864
No 493
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=84.90 E-value=70 Score=41.48 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=78.7
Q ss_pred EeCCCeEEEEEcCCcee-------EEEe---------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q 001396 856 GMDDSTILIYNARSSEV-------ISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 856 g~~dg~v~iwd~~~~~~-------~~~l---------~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 919 (1086)
|-.||.|.-||-.+..- +..| .-..+.|..+.+++...-++-+. +..+.+=-.. ........
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r-~~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRR-NKVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccccc-CCCCCCcc
Confidence 45689999999765211 1111 11345667777776554444322 2212110000 01111122
Q ss_pred eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEE
Q 001396 920 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~v 998 (1086)
+..++ ...|+++|.-.+.++++....|.+.... +.+..+.--..+-.+.|..++......+.| -..+|.++-
T Consensus 697 l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 697 LEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred ccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 33333 1368999999999999988999999998 767755443445578999999988765555 456776654
No 494
>PLN02153 epithiospecifier protein
Probab=84.52 E-value=69 Score=35.22 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCC-------EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC----cEEEEeCCCC
Q 001396 401 DGSLLGVAYSKH-------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIKVWDAVTG 469 (1086)
Q Consensus 401 dg~~las~~~d~-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~----~i~iwd~~~~ 469 (1086)
+++..+.|+.+. .+.+||+.+.+-......-..........+...-+..++++.|..+. .+.+||..+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Q ss_pred ceeEEeec-----CCcceEEEeecccCCccEEEEEEcC-----------CeEEEEEcCCCceeEEecCC---CCceEEEE
Q 001396 470 SRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD-----------GKIKAWLYDSLGARVDYDAP---GLGCTRMA 530 (1086)
Q Consensus 470 ~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~~---~~~i~~~~ 530 (1086)
+-...-.- ........+. ..++++++.|+.+ ..+.+||..+.+=...-... .......+
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~ 189 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMA--SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGF 189 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEE--EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceE
Q ss_pred EecCCCEEEEEee---------CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC--------
Q 001396 531 YSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-------- 593 (1086)
Q Consensus 531 ~s~d~~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-------- 593 (1086)
..-+++..+.++. +......+.+||+.+.+....-.............+...++..++.|+..
T Consensus 190 ~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 190 AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred EEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccc
Q ss_pred ------CcEEEEEcCCCeeEEEE-----cCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 594 ------HVIKIWDMNKVQLLTTI-----DAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 594 ------g~i~iwd~~~~~~~~~~-----~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
..+..+|+.+.+-...- ...........+.+.-+++.++.|+.++.
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.08 E-value=22 Score=37.40 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=64.1
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE------cCCeEEEEEcCCCceeEEec----CCCCceEEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYD----APGLGCTRM 529 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~----~~~~~i~~~ 529 (1086)
.|++||..+.+-..--.+-.+.|+++.|. .+.++++.|. ....+..||+.+..-...-. .-.+++..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 59999988777665555677889999985 3445666664 35568889887754322222 123577777
Q ss_pred EEec-CCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 530 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 530 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+.. |+..+..++....+...|..||-.....+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 7643 55445544443556778888886554433
No 496
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.92 E-value=4.3 Score=47.75 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=78.1
Q ss_pred CceEeeecC-CCceEEEEEeccCcEEEEecCCCceee-ee--eee-eeeccccceeeeeeeecCCCccEEEEEEC--CCC
Q 001396 330 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLF-IR--NFK-VWDIGACSMLFKTALVRDPGVSVNRVVWS--PDG 402 (1086)
Q Consensus 330 ~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg 402 (1086)
.|+.+.... -++.+|+.+..||.|.+|.+++=.... .. ..+ ...-.. ..++ +...-...++.++++ ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~-i~P~---f~~~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLK-IKPF---FHLRVGASAWGLDIHDYKKS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhcccccccccccc-CCCC---eEeecCCceeEEEEEecCcc
Confidence 355554443 223478889999999999864210000 00 000 000000 0010 111234589999999 888
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC----cEEEEEEeCCCcEEEEeC
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK----QISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~----~l~l~s~~~d~~i~iwd~ 466 (1086)
++||+++....|.||-......-.....-..|...|.+|+|-++.. ...+++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999998888888887765321111111123667899999977651 136888899999998886
No 497
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.73 E-value=27 Score=31.51 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=64.0
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCe--------eeeEEecccccCCceEEEEEec-----CCCEEEEEECCCcE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGA--------IKRTYQGLQLQHNSVSVVHFDT-----AKDQILAAGDDHVI 596 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~s~dg~i 596 (1086)
.|......|++++. .+.|.+.+..... .++.+.- ...|++++-.+ +...|+.|+ ...+
T Consensus 5 kfDG~~pcL~~aT~----~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliGt-~t~l 75 (136)
T PF14781_consen 5 KFDGVHPCLACATT----GGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIGT-QTSL 75 (136)
T ss_pred EeCCCceeEEEEec----CCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEec-cceE
Confidence 34444445665554 4567777765332 2333332 24667765544 234455555 5679
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEec---CCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
..||+.....+.....+.+ ++++.+.. ...-++..+.+..|.-+|....+.++..
T Consensus 76 laYDV~~N~d~Fyke~~DG---vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 76 LAYDVENNSDLFYKEVPDG---VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEcccCchhhhhhCccc---eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9999998877665555544 56666643 2233444445577888887766555543
No 498
>PRK13614 lipoprotein LpqB; Provisional
Probab=83.39 E-value=1e+02 Score=36.26 Aligned_cols=190 Identities=15% Similarity=0.067 Sum_probs=97.1
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcC-Ccee--
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNAR-SSEV-- 872 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~-~~~~-- 872 (1086)
.+..+++++++..+|...+..-.+|-...+.....+. ....++.-.|.+ ++ .+-+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~-~g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT-SGSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeee-cCCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 5778899999999888874333444333233332222 123466777877 55 444444333 44444322 2111
Q ss_pred ----EEEeccccC-CeEEEEEeCCCCEEEEE-eCCCc--EEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 873 ----ISKLEGHSK-RVTGLVFSDALNILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 873 ----~~~l~~h~~-~v~~l~~spdg~~l~s~-s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
........+ .|+.+..|+||-.++.. ..+|. |.|=-+..........+..+... .....+.+++|..++.+
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~sl 499 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDSTV 499 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCEE
Confidence 111223444 49999999999877653 34554 66654433211111122111111 00136889999999998
Q ss_pred EEEE----eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCc
Q 001396 945 FLLV----HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 995 (1086)
Q Consensus 945 l~~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~ 995 (1086)
++.+ .+..+++..+..|..- . . .+-..+..|+-..+.+-|+.. .|+.
T Consensus 500 ~V~~~~~~~~~~~~~v~v~~g~~~-~-l-~~~~~~~~iaag~~~~~i~~~-sd~~ 550 (573)
T PRK13614 500 VVTKASATSNVVPELLSVDAGQPQ-Q-L-APWTGLTSITVGNGPEEVYGQ-SDGG 550 (573)
T ss_pred EEEeccCCCcceEEEEEeCCCCcc-c-C-CCcCCeEEEeecCCccceEEE-cCCC
Confidence 8773 2234667776444321 1 1 123345555544333333333 3444
No 499
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.98 E-value=0.63 Score=50.48 Aligned_cols=146 Identities=15% Similarity=0.216 Sum_probs=98.0
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 410 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~ 410 (1086)
-...|-|.+.. ++.++.+..+..||-....... ....+....++|..+|..++.. -.
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~agq~~le---------------------~n~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKAGQVILE---------------------LNPTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhhcceecc---------------------cCCchhHhhhhhccccchhhhhhhc
Confidence 34456777776 6777777888888854433221 1123455678888888776654 45
Q ss_pred CCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
.+.+.+||+.+..... .++.+ |.... +.|++-+. .++.+...+.+.|++..+.+.+-..-.|...++++++.+
T Consensus 96 ~~piylwd~n~eytqq--LE~gg~~s~sl--l~wsKg~~--el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQ--LESGGTSSKSL--LAWSKGTP--ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred CCCeeechhhhhhHHH--HhccCcchHHH--HhhccCCc--cccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 6789999998753221 12222 33222 78998888 678888899999999888777666655889999999865
Q ss_pred cCCccEEEEEEcCCeEEEE
Q 001396 490 KENIHFIFSISVDGKIKAW 508 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vw 508 (1086)
.+ +.+.++.|..+.+-
T Consensus 170 Ed---~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 170 ED---YVILCDCDNTLSVT 185 (615)
T ss_pred cc---eeeecCcHHHHHHh
Confidence 32 67777777665544
No 500
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.74 E-value=81 Score=34.72 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeC
Q 001396 503 GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
..+.+||..+.+=...-.... ......+...+++..+.++..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457777766543222111111 111222234567777777653
Done!