Query 001396
Match_columns 1086
No_of_seqs 904 out of 5015
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 01:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1E-68 3.4E-73 645.3 81.9 568 320-1053 8-577 (577)
2 1nr0_A Actin interacting prote 100.0 3.4E-67 1.1E-71 631.9 75.5 577 325-1002 15-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 2.4E-63 8.3E-68 598.4 74.1 555 291-1000 21-577 (577)
4 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-64 4.3E-69 665.8 67.2 619 320-1056 607-1249(1249)
5 1nr0_A Actin interacting prote 100.0 6.4E-64 2.2E-68 603.3 67.4 573 387-1055 15-610 (611)
6 1pgu_A Actin interacting prote 100.0 5.3E-61 1.8E-65 583.4 69.0 559 325-1004 15-615 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 3.3E-58 1.1E-62 572.3 70.5 621 323-1045 12-818 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-58 3.9E-63 609.2 69.1 588 385-1059 610-1210(1249)
9 1pgu_A Actin interacting prote 100.0 1.6E-57 5.4E-62 552.9 62.4 555 386-1056 14-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.5E-56 1.2E-60 554.0 56.8 594 386-1059 13-786 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-48 1.4E-52 486.2 59.0 559 319-1005 4-603 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-46 4.2E-51 472.8 58.6 570 386-1055 9-600 (814)
13 1vyh_C Platelet-activating fac 100.0 7.6E-44 2.6E-48 406.0 40.4 288 322-645 102-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 2.8E-40 9.6E-45 362.5 41.9 294 319-646 23-320 (321)
15 2pbi_B Guanine nucleotide-bind 100.0 5.3E-40 1.8E-44 366.1 44.6 299 317-644 53-354 (354)
16 1got_B GT-beta; complex (GTP-b 100.0 4.6E-40 1.6E-44 365.0 43.7 296 317-644 44-340 (340)
17 2ynn_A Coatomer subunit beta'; 100.0 1.4E-39 4.9E-44 354.7 39.3 293 319-647 4-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 4.1E-39 1.4E-43 353.6 42.1 301 319-648 8-318 (319)
19 3iz6_a 40S ribosomal protein R 100.0 7.6E-40 2.6E-44 369.3 36.6 306 318-649 56-377 (380)
20 1got_B GT-beta; complex (GTP-b 100.0 3.2E-38 1.1E-42 350.2 42.8 286 386-708 51-340 (340)
21 1vyh_C Platelet-activating fac 100.0 8.4E-39 2.9E-43 364.3 38.7 286 386-709 104-409 (410)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-38 7.9E-43 351.9 40.6 307 318-652 5-340 (345)
23 3ow8_A WD repeat-containing pr 100.0 2.8E-38 9.7E-43 346.5 38.5 288 386-709 28-319 (321)
24 4ery_A WD repeat-containing pr 100.0 1.8E-37 6.1E-42 340.4 44.3 295 319-646 14-311 (312)
25 4g56_B MGC81050 protein; prote 100.0 6.4E-39 2.2E-43 357.5 32.0 319 696-1059 20-346 (357)
26 4g56_B MGC81050 protein; prote 100.0 1.5E-38 5.1E-43 354.6 34.6 294 325-648 39-344 (357)
27 4gqb_B Methylosome protein 50; 100.0 4.5E-38 1.5E-42 347.2 37.7 299 325-648 27-332 (344)
28 2pbi_B Guanine nucleotide-bind 100.0 5E-37 1.7E-41 342.0 42.1 287 386-708 60-354 (354)
29 1r5m_A SIR4-interacting protei 100.0 4.8E-37 1.7E-41 353.7 43.5 327 387-910 42-424 (425)
30 1r5m_A SIR4-interacting protei 100.0 2.1E-37 7.2E-42 356.8 40.2 341 325-710 42-424 (425)
31 4gqb_B Methylosome protein 50; 100.0 7.1E-38 2.4E-42 345.7 34.1 296 727-1057 29-332 (344)
32 2hes_X YDR267CP; beta-propelle 100.0 4.6E-37 1.6E-41 339.0 40.4 297 318-647 4-328 (330)
33 2xzm_R RACK1; ribosome, transl 100.0 3.8E-37 1.3E-41 342.2 39.8 302 318-648 11-341 (343)
34 2ynn_A Coatomer subunit beta'; 100.0 7E-37 2.4E-41 333.4 40.2 268 386-668 9-280 (304)
35 1erj_A Transcriptional repress 100.0 8.5E-37 2.9E-41 346.1 41.8 303 326-647 62-389 (393)
36 3iz6_a 40S ribosomal protein R 100.0 1.1E-37 3.8E-42 351.6 33.3 290 386-710 62-374 (380)
37 1k32_A Tricorn protease; prote 100.0 1.1E-35 3.7E-40 380.3 55.3 523 327-1005 13-639 (1045)
38 1gxr_A ESG1, transducin-like e 100.0 2.5E-36 8.4E-41 335.7 41.7 289 327-651 8-300 (337)
39 2pm9_A Protein WEB1, protein t 100.0 1.1E-37 3.6E-42 358.1 31.6 353 328-710 12-413 (416)
40 4aow_A Guanine nucleotide-bind 100.0 2.6E-36 8.8E-41 336.1 41.3 303 319-649 29-339 (340)
41 3frx_A Guanine nucleotide-bind 100.0 5.6E-36 1.9E-40 328.6 43.0 297 385-759 12-317 (319)
42 4ery_A WD repeat-containing pr 100.0 1E-35 3.4E-40 326.4 42.7 291 385-710 18-311 (312)
43 1k32_A Tricorn protease; prote 100.0 3.1E-34 1.1E-38 366.8 57.9 529 389-1058 13-639 (1045)
44 1erj_A Transcriptional repress 100.0 1.3E-35 4.6E-40 336.2 39.9 293 388-711 62-389 (393)
45 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-35 4.3E-40 329.9 38.4 294 386-713 11-337 (345)
46 2hes_X YDR267CP; beta-propelle 100.0 4.8E-35 1.7E-39 322.9 42.9 306 558-1003 3-328 (330)
47 3vl1_A 26S proteasome regulato 100.0 4.3E-36 1.5E-40 345.2 34.6 350 329-758 57-418 (420)
48 3vl1_A 26S proteasome regulato 100.0 6.8E-36 2.3E-40 343.4 35.9 347 391-911 57-419 (420)
49 3gre_A Serine/threonine-protei 100.0 3E-36 1E-40 348.3 32.7 384 333-908 32-437 (437)
50 3dm0_A Maltose-binding peripla 100.0 2.8E-35 9.6E-40 360.4 40.7 300 319-646 373-692 (694)
51 1gxr_A ESG1, transducin-like e 100.0 8.8E-35 3E-39 323.1 41.1 321 433-909 7-335 (337)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-34 7.9E-39 332.9 45.8 328 320-759 110-442 (445)
53 2xzm_R RACK1; ribosome, transl 100.0 1.6E-34 5.5E-39 321.0 42.5 288 385-711 16-340 (343)
54 3v7d_B Cell division control p 100.0 3.2E-34 1.1E-38 334.1 46.0 305 318-667 111-442 (464)
55 2pm9_A Protein WEB1, protein t 100.0 2.3E-36 7.8E-41 347.0 26.9 332 434-911 11-414 (416)
56 3ei3_B DNA damage-binding prot 100.0 7.3E-35 2.5E-39 330.1 38.3 298 318-647 63-382 (383)
57 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-36 7.9E-41 350.2 25.9 341 320-710 126-516 (524)
58 1sq9_A Antiviral protein SKI8; 100.0 1E-34 3.5E-39 330.9 37.8 296 319-648 7-396 (397)
59 3zwl_B Eukaryotic translation 100.0 7.4E-34 2.5E-38 320.1 42.6 292 320-649 24-348 (369)
60 3odt_A Protein DOA1; ubiquitin 100.0 5.7E-34 1.9E-38 312.9 39.8 293 318-652 8-301 (313)
61 3i2n_A WD repeat-containing pr 100.0 1.9E-34 6.7E-39 323.3 35.6 300 317-649 7-355 (357)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-33 5.6E-38 325.7 44.1 319 386-869 114-442 (445)
63 2j04_B YDR362CP, TAU91; beta p 100.0 2E-35 6.9E-40 342.3 27.7 350 389-869 132-517 (524)
64 3v7d_B Cell division control p 100.0 7.7E-33 2.6E-37 322.4 46.9 344 516-1001 114-461 (464)
65 3k26_A Polycomb protein EED; W 100.0 2.8E-34 9.5E-39 323.3 33.1 295 322-646 12-365 (366)
66 4aow_A Guanine nucleotide-bind 100.0 4.2E-33 1.4E-37 310.1 42.1 299 386-760 34-338 (340)
67 3gre_A Serine/threonine-protei 100.0 8E-34 2.7E-38 327.9 36.3 272 317-649 51-361 (437)
68 4e54_B DNA damage-binding prot 100.0 1.3E-34 4.3E-39 333.3 29.1 303 320-650 111-433 (435)
69 4h5i_A Guanine nucleotide-exch 100.0 2.3E-33 7.8E-38 313.5 37.8 203 795-1004 132-344 (365)
70 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-33 8.2E-38 316.4 37.3 291 324-648 4-362 (372)
71 4aez_A CDC20, WD repeat-contai 100.0 1E-32 3.4E-37 314.0 40.6 298 324-654 87-387 (401)
72 3zwl_B Eukaryotic translation 100.0 1.4E-32 4.9E-37 309.6 41.4 288 384-711 26-346 (369)
73 3dwl_C Actin-related protein 2 100.0 2E-34 6.8E-39 325.8 25.1 289 324-645 7-377 (377)
74 4h5i_A Guanine nucleotide-exch 100.0 1.5E-33 5.2E-38 314.9 31.9 299 329-648 15-344 (365)
75 4a11_B DNA excision repair pro 100.0 1.9E-33 6.3E-38 321.8 32.8 348 549-1055 23-404 (408)
76 4gga_A P55CDC, cell division c 100.0 4E-32 1.4E-36 311.0 43.1 291 330-657 107-405 (420)
77 2pm7_B Protein transport prote 100.0 8.2E-33 2.8E-37 300.1 35.3 254 322-602 3-284 (297)
78 3ei3_B DNA damage-binding prot 100.0 6.3E-33 2.1E-37 314.1 35.2 307 553-1003 57-382 (383)
79 1k8k_C P40, ARP2/3 complex 41 100.0 8.5E-33 2.9E-37 311.9 35.8 344 520-1007 5-365 (372)
80 4e54_B DNA damage-binding prot 100.0 1.8E-33 6.1E-38 323.7 30.1 303 562-1007 112-434 (435)
81 1sq9_A Antiviral protein SKI8; 100.0 1.7E-32 5.8E-37 312.5 37.5 296 472-912 9-396 (397)
82 3dm0_A Maltose-binding peripla 100.0 4.6E-32 1.6E-36 332.0 43.7 211 430-649 377-594 (694)
83 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-33 1.1E-37 312.2 29.4 317 325-748 12-350 (588)
84 2pm7_B Protein transport prote 100.0 1.9E-32 6.5E-37 297.2 34.1 252 386-647 5-285 (297)
85 4ggc_A P55CDC, cell division c 100.0 3.2E-31 1.1E-35 291.6 43.3 297 316-648 9-316 (318)
86 4a11_B DNA excision repair pro 100.0 4.6E-32 1.6E-36 310.2 37.9 347 319-710 34-404 (408)
87 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-33 3.6E-38 316.0 22.3 331 521-991 13-349 (588)
88 3k26_A Polycomb protein EED; W 100.0 5.5E-32 1.9E-36 304.4 32.7 294 384-710 12-365 (366)
89 3dw8_B Serine/threonine-protei 100.0 8.1E-32 2.8E-36 312.3 34.8 301 326-646 26-445 (447)
90 3bg1_A Protein SEC13 homolog; 100.0 1.8E-32 6.2E-37 300.2 27.3 253 322-602 7-292 (316)
91 3odt_A Protein DOA1; ubiquitin 100.0 5.2E-31 1.8E-35 289.2 38.7 280 386-713 14-298 (313)
92 3i2n_A WD repeat-containing pr 100.0 1.1E-31 3.8E-36 300.9 33.8 292 385-710 13-352 (357)
93 1yfq_A Cell cycle arrest prote 100.0 1.6E-31 5.5E-36 297.5 32.0 287 322-644 5-321 (342)
94 1p22_A F-BOX/WD-repeat protein 100.0 4.2E-31 1.4E-35 304.3 36.3 278 324-651 129-418 (435)
95 4gga_A P55CDC, cell division c 100.0 6.3E-31 2.1E-35 301.1 36.8 281 392-713 107-397 (420)
96 3mmy_A MRNA export factor; mRN 100.0 5E-31 1.7E-35 296.8 34.7 294 316-645 27-344 (368)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 4.5E-31 1.5E-35 300.8 33.5 298 329-649 35-344 (402)
98 3dwl_C Actin-related protein 2 100.0 1.4E-32 4.7E-37 310.7 20.7 241 388-646 9-280 (377)
99 3bg1_A Protein SEC13 homolog; 100.0 1.1E-31 3.7E-36 294.0 24.6 251 385-647 8-293 (316)
100 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-30 3.8E-35 291.5 32.4 307 322-655 5-345 (351)
101 4ggc_A P55CDC, cell division c 100.0 8.4E-30 2.9E-34 280.3 36.4 277 393-710 28-314 (318)
102 4aez_A CDC20, WD repeat-contai 100.0 2.8E-30 9.5E-35 293.9 33.5 284 387-712 88-381 (401)
103 3jrp_A Fusion protein of prote 100.0 3.3E-30 1.1E-34 291.5 33.7 259 320-605 3-289 (379)
104 3dw8_B Serine/threonine-protei 100.0 2.3E-30 7.7E-35 300.1 33.0 254 388-651 26-377 (447)
105 3jrp_A Fusion protein of prote 100.0 3.7E-30 1.3E-34 291.1 32.8 256 386-651 7-291 (379)
106 1p22_A F-BOX/WD-repeat protein 100.0 8E-30 2.8E-34 293.5 35.2 275 387-713 130-416 (435)
107 3mmy_A MRNA export factor; mRN 100.0 6.8E-30 2.3E-34 287.5 32.9 290 386-710 35-345 (368)
108 1yfq_A Cell cycle arrest prote 100.0 1.2E-29 4E-34 282.4 30.3 285 386-709 7-322 (342)
109 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-29 7.6E-34 281.0 31.9 294 385-711 6-337 (351)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-28 3.8E-33 285.2 37.6 300 330-647 6-391 (450)
111 1l0q_A Surface layer protein; 100.0 7.3E-28 2.5E-32 273.4 42.3 280 341-659 2-287 (391)
112 3vu4_A KMHSV2; beta-propeller 100.0 6.8E-29 2.3E-33 276.4 30.2 283 320-648 11-337 (355)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-28 5.1E-33 279.9 33.4 285 391-710 35-341 (402)
114 2w18_A PALB2, fancn, partner a 100.0 1.5E-27 5.3E-32 249.7 37.2 294 437-909 41-355 (356)
115 1l0q_A Surface layer protein; 100.0 4E-27 1.4E-31 267.3 42.8 328 451-947 4-364 (391)
116 3jro_A Fusion protein of prote 100.0 5.6E-29 1.9E-33 305.8 27.3 260 321-605 2-287 (753)
117 2xyi_A Probable histone-bindin 100.0 3.5E-28 1.2E-32 278.9 32.1 255 322-604 122-411 (430)
118 3bws_A Protein LP49; two-domai 100.0 7.9E-27 2.7E-31 269.0 43.5 355 389-911 26-432 (433)
119 3jro_A Fusion protein of prote 100.0 6.1E-29 2.1E-33 305.5 26.1 254 386-649 5-287 (753)
120 3bws_A Protein LP49; two-domai 100.0 4.8E-27 1.6E-31 270.8 40.2 300 391-758 123-431 (433)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-27 5.4E-32 265.4 33.6 299 386-713 15-338 (355)
122 2xyi_A Probable histone-bindin 100.0 4E-27 1.4E-31 270.0 34.8 255 383-648 121-411 (430)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.9E-28 1E-32 270.6 24.4 272 333-646 41-332 (343)
124 2w18_A PALB2, fancn, partner a 100.0 9.6E-27 3.3E-31 243.7 33.8 285 331-645 42-355 (356)
125 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-27 1.1E-31 273.1 33.4 265 391-668 5-364 (450)
126 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-27 4.5E-32 265.3 28.7 279 441-911 42-333 (343)
127 1nir_A Nitrite reductase; hemo 100.0 2.2E-26 7.6E-31 269.2 37.3 342 530-968 144-522 (543)
128 1nir_A Nitrite reductase; hemo 100.0 5.8E-26 2E-30 265.6 40.6 346 335-880 144-525 (543)
129 4gq1_A NUP37; propeller, trans 100.0 8.7E-28 3E-32 271.6 21.4 275 323-645 84-387 (393)
130 4gq1_A NUP37; propeller, trans 99.9 4.2E-27 1.4E-31 266.0 21.8 324 335-709 25-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-25 3.8E-30 255.6 30.8 306 328-670 62-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 7.8E-24 2.7E-28 262.0 37.4 303 328-646 36-412 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.6E-24 2.3E-28 241.0 31.9 306 435-893 62-410 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 6.1E-23 2.1E-27 254.0 34.9 330 435-912 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-23 5.4E-28 258.6 29.1 310 330-670 18-421 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 6.8E-23 2.3E-27 252.8 30.4 386 525-1010 18-450 (723)
137 3u4y_A Uncharacterized protein 99.9 9E-22 3.1E-26 217.4 36.1 280 334-648 3-305 (331)
138 3vgz_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 214.5 34.8 274 329-638 41-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 3.5E-21 1.2E-25 236.6 37.3 238 393-646 28-341 (706)
140 1ri6_A Putative isomerase YBHE 99.9 1.1E-20 3.8E-25 209.8 36.5 276 340-646 4-307 (343)
141 2z3z_A Dipeptidyl aminopeptida 99.9 2.1E-21 7E-26 238.7 32.8 324 438-913 28-437 (706)
142 1ri6_A Putative isomerase YBHE 99.9 2.9E-20 1E-24 206.3 34.7 205 798-1006 85-313 (343)
143 1pby_B Quinohemoprotein amine 99.9 1.7E-20 5.9E-25 207.6 30.6 279 343-656 3-319 (337)
144 1pby_B Quinohemoprotein amine 99.9 3.3E-20 1.1E-24 205.4 32.7 279 585-1011 2-318 (337)
145 3u4y_A Uncharacterized protein 99.9 7.6E-20 2.6E-24 201.9 35.4 196 441-648 3-208 (331)
146 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.7E-24 202.7 36.5 248 391-653 41-309 (353)
147 2ojh_A Uncharacterized protein 99.9 8.2E-21 2.8E-25 205.8 25.4 257 346-638 17-293 (297)
148 1z68_A Fibroblast activation p 99.9 1.1E-20 3.6E-25 232.8 23.9 377 528-1011 20-451 (719)
149 3o4h_A Acylamino-acid-releasin 99.9 2.1E-20 7.2E-25 223.7 24.1 272 328-646 21-314 (582)
150 2ojh_A Uncharacterized protein 99.8 1.1E-19 3.7E-24 196.9 26.5 244 319-594 32-293 (297)
151 3hfq_A Uncharacterized protein 99.8 1E-18 3.6E-23 194.1 34.1 247 795-1058 38-319 (347)
152 1z68_A Fibroblast activation p 99.8 3.3E-20 1.1E-24 228.3 24.1 279 332-647 19-391 (719)
153 3pe7_A Oligogalacturonate lyas 99.8 2.4E-19 8.3E-24 202.8 29.1 309 312-646 14-381 (388)
154 4a5s_A Dipeptidyl peptidase 4 99.8 6.1E-19 2.1E-23 216.7 34.3 279 329-649 17-355 (740)
155 3scy_A Hypothetical bacterial 99.8 1.9E-17 6.5E-22 184.9 40.9 310 533-981 11-360 (361)
156 3scy_A Hypothetical bacterial 99.8 8.3E-18 2.8E-22 187.9 37.8 300 336-666 9-359 (361)
157 3hfq_A Uncharacterized protein 99.8 7E-18 2.4E-22 187.4 36.8 251 389-650 38-322 (347)
158 3o4h_A Acylamino-acid-releasin 99.8 3.9E-19 1.3E-23 212.7 27.6 236 390-645 21-274 (582)
159 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-18 7.6E-23 191.7 31.3 283 332-655 3-333 (349)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 8.6E-19 2.9E-23 199.3 27.5 221 328-559 36-279 (434)
161 4a5s_A Dipeptidyl peptidase 4 99.8 9.2E-18 3.1E-22 206.2 36.8 380 526-1011 19-457 (740)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 3.4E-19 1.2E-23 202.6 21.0 270 796-1079 36-356 (434)
163 1jmx_B Amine dehydrogenase; ox 99.8 1E-17 3.6E-22 186.2 30.7 307 490-879 8-335 (349)
164 3pe7_A Oligogalacturonate lyas 99.8 6.5E-18 2.2E-22 191.0 28.4 294 386-710 26-381 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.9E-17 6.4E-22 184.9 29.3 249 797-1057 40-342 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 7.9E-17 2.7E-21 178.6 33.3 297 338-670 13-359 (361)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.5E-17 2.6E-21 180.0 31.5 250 389-648 38-342 (365)
168 3c5m_A Oligogalacturonate lyas 99.8 2.3E-17 8E-22 187.0 27.9 295 318-645 20-380 (396)
169 2oiz_A Aromatic amine dehydrog 99.8 3.2E-16 1.1E-20 173.6 34.2 313 492-893 14-360 (361)
170 1qks_A Cytochrome CD1 nitrite 99.7 3.2E-14 1.1E-18 165.3 41.9 321 548-1011 176-546 (567)
171 3azo_A Aminopeptidase; POP fam 99.7 6.7E-16 2.3E-20 188.0 28.9 293 323-651 18-373 (662)
172 1qks_A Cytochrome CD1 nitrite 99.7 7.1E-14 2.4E-18 162.3 42.8 246 338-647 165-421 (567)
173 2gop_A Trilobed protease; beta 99.7 2.3E-15 7.9E-20 167.0 29.0 262 330-646 16-330 (347)
174 3c5m_A Oligogalacturonate lyas 99.7 5.6E-16 1.9E-20 175.6 23.1 244 393-650 38-332 (396)
175 3fvz_A Peptidyl-glycine alpha- 99.7 7.4E-15 2.5E-19 160.9 30.1 248 329-603 24-322 (329)
176 3fvz_A Peptidyl-glycine alpha- 99.7 7.8E-15 2.7E-19 160.8 28.3 245 796-1056 23-322 (329)
177 1q7f_A NHL, brain tumor CG1071 99.7 2.5E-14 8.4E-19 153.6 31.6 242 795-1058 28-282 (286)
178 3azo_A Aminopeptidase; POP fam 99.7 1.2E-14 4.1E-19 176.9 32.7 249 386-645 19-321 (662)
179 4a2l_A BT_4663, two-component 99.7 3.4E-10 1.2E-14 140.0 71.1 585 329-1054 43-657 (795)
180 1q7f_A NHL, brain tumor CG1071 99.7 5.5E-14 1.9E-18 150.9 32.0 248 325-604 26-281 (286)
181 4a2l_A BT_4663, two-component 99.7 1.2E-10 4.1E-15 144.1 65.1 535 329-1002 88-658 (795)
182 2dg1_A DRP35, lactonase; beta 99.6 7.9E-14 2.7E-18 153.5 30.1 274 329-638 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 8.4E-14 2.9E-18 170.1 33.3 250 388-649 122-416 (710)
184 3e5z_A Putative gluconolactona 99.6 1.3E-13 4.4E-18 148.8 28.9 249 319-606 18-289 (296)
185 2xdw_A Prolyl endopeptidase; a 99.6 7.5E-14 2.6E-18 170.6 27.9 249 326-605 122-416 (710)
186 3v9f_A Two-component system se 99.6 3.9E-09 1.3E-13 130.2 70.1 592 329-1054 19-654 (781)
187 2gop_A Trilobed protease; beta 99.6 4.3E-13 1.5E-17 148.6 30.9 220 798-1055 60-330 (347)
188 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-13 3.9E-18 168.4 27.6 249 387-649 117-399 (695)
189 3dsm_A Uncharacterized protein 99.6 2.2E-13 7.7E-18 148.8 27.1 278 349-655 15-309 (328)
190 3sjl_D Methylamine dehydrogena 99.6 1.7E-12 5.8E-17 140.5 32.3 204 799-1011 139-371 (386)
191 3no2_A Uncharacterized protein 99.6 9.5E-13 3.2E-17 139.0 29.8 245 343-623 7-272 (276)
192 2dg1_A DRP35, lactonase; beta 99.6 2.5E-12 8.6E-17 141.4 34.0 246 318-594 34-301 (333)
193 2mad_H Methylamine dehydrogena 99.6 6.7E-12 2.3E-16 138.7 37.0 281 335-653 27-356 (373)
194 3sjl_D Methylamine dehydrogena 99.6 4.4E-13 1.5E-17 145.0 26.7 287 333-656 37-372 (386)
195 2z2n_A Virginiamycin B lyase; 99.6 1.2E-11 4E-16 133.6 38.0 285 324-648 10-296 (299)
196 2mad_H Methylamine dehydrogena 99.6 8.3E-12 2.8E-16 137.9 37.0 203 800-1010 128-357 (373)
197 3dsm_A Uncharacterized protein 99.6 1E-12 3.4E-17 143.6 29.2 272 700-1011 15-309 (328)
198 3e5z_A Putative gluconolactona 99.6 1.1E-12 3.7E-17 141.5 28.3 238 386-648 23-287 (296)
199 3v9f_A Two-component system se 99.5 5E-09 1.7E-13 129.2 63.0 536 330-1002 67-655 (781)
200 2bkl_A Prolyl endopeptidase; m 99.5 1.5E-13 5.2E-18 167.3 21.5 249 326-606 118-400 (695)
201 3no2_A Uncharacterized protein 99.5 1.5E-12 5.2E-17 137.5 24.9 222 807-1044 4-231 (276)
202 1yr2_A Prolyl oligopeptidase; 99.5 1.2E-12 4.2E-17 160.4 27.4 247 388-649 160-443 (741)
203 2z2n_A Virginiamycin B lyase; 99.5 5.9E-11 2E-15 128.0 37.7 279 727-1056 13-295 (299)
204 1rwi_B Serine/threonine-protei 99.5 1.6E-12 5.5E-17 138.0 24.5 240 330-605 25-266 (270)
205 3c75_H MADH, methylamine dehyd 99.5 1.1E-11 3.6E-16 137.1 28.8 205 800-1010 180-409 (426)
206 1rwi_B Serine/threonine-protei 99.5 4.7E-12 1.6E-16 134.4 25.2 240 392-649 25-266 (270)
207 2qc5_A Streptogramin B lactona 99.5 1.2E-10 4.1E-15 125.6 36.6 280 326-645 17-298 (300)
208 3c75_H MADH, methylamine dehyd 99.5 5.7E-12 2E-16 139.2 26.1 281 338-654 82-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.4 4.9E-12 1.7E-16 155.0 24.9 248 326-606 160-444 (741)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 8.9E-11 3E-15 127.7 30.1 250 325-603 14-299 (314)
211 2qc5_A Streptogramin B lactona 99.4 1.2E-09 4E-14 117.8 35.5 243 386-646 15-259 (300)
212 3hrp_A Uncharacterized protein 99.4 2.7E-10 9.2E-15 127.8 30.9 242 329-601 131-408 (409)
213 4a0p_A LRP6, LRP-6, low-densit 99.4 2.3E-06 8E-11 100.6 63.9 534 404-1011 8-557 (628)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.4E-10 8.3E-15 124.2 27.2 244 730-1003 19-299 (314)
215 3iuj_A Prolyl endopeptidase; h 99.3 2.1E-10 7.1E-15 139.1 28.8 252 326-607 126-409 (693)
216 3g4e_A Regucalcin; six bladed 99.3 4.8E-10 1.7E-14 120.4 28.6 231 326-592 10-261 (297)
217 3dr2_A Exported gluconolactona 99.3 3.4E-10 1.2E-14 122.2 26.5 237 319-594 35-298 (305)
218 2qe8_A Uncharacterized protein 99.3 4.9E-11 1.7E-15 131.2 20.0 273 329-640 17-314 (343)
219 3g4e_A Regucalcin; six bladed 99.3 9.3E-10 3.2E-14 118.2 28.6 228 730-992 14-261 (297)
220 1xip_A Nucleoporin NUP159; bet 99.3 3.9E-10 1.3E-14 122.8 25.3 174 797-991 38-232 (388)
221 3hrp_A Uncharacterized protein 99.3 1.2E-09 4E-14 122.6 29.4 249 797-1054 131-408 (409)
222 3iuj_A Prolyl endopeptidase; h 99.3 1.8E-10 6.2E-15 139.6 24.4 245 388-649 126-407 (693)
223 1mda_H Methylamine dehydrogena 99.3 2E-10 6.9E-15 124.9 22.1 195 801-1011 128-354 (368)
224 1mda_H Methylamine dehydrogena 99.3 1.6E-10 5.3E-15 125.8 20.7 272 342-657 33-356 (368)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 4E-09 1.4E-13 114.7 30.2 225 330-593 50-292 (326)
226 2qe8_A Uncharacterized protein 99.2 2.7E-10 9.4E-15 125.1 20.5 273 729-1053 17-318 (343)
227 1kb0_A Quinohemoprotein alcoho 99.2 5.4E-09 1.8E-13 125.1 32.0 332 494-897 78-536 (677)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.6E-08 1.2E-12 110.0 36.7 151 451-613 55-217 (376)
229 3s94_A LRP-6, low-density lipo 99.2 8.8E-06 3E-10 95.6 58.4 521 410-1004 16-552 (619)
230 1xip_A Nucleoporin NUP159; bet 99.2 2.7E-10 9.3E-15 123.9 17.9 177 391-589 38-230 (388)
231 2ghs_A AGR_C_1268P; regucalcin 99.2 7.6E-09 2.6E-13 112.6 28.2 225 731-993 51-292 (326)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.4E-08 1.1E-12 110.2 34.1 276 344-656 56-346 (376)
233 3dr2_A Exported gluconolactona 99.2 4.6E-09 1.6E-13 113.2 25.9 232 388-639 42-299 (305)
234 1yiq_A Quinohemoprotein alcoho 99.2 8.2E-09 2.8E-13 123.8 30.6 331 494-897 71-534 (689)
235 1yiq_A Quinohemoprotein alcoho 99.2 6.5E-09 2.2E-13 124.7 28.4 291 344-658 73-516 (689)
236 1kb0_A Quinohemoprotein alcoho 99.1 1.9E-08 6.7E-13 120.3 31.1 288 344-656 80-516 (677)
237 2ece_A 462AA long hypothetical 99.1 1.4E-08 4.7E-13 110.1 25.8 238 334-591 87-399 (462)
238 2ece_A 462AA long hypothetical 99.1 4E-08 1.4E-12 106.6 28.7 233 803-1044 88-399 (462)
239 3hxj_A Pyrrolo-quinoline quino 99.1 5.2E-09 1.8E-13 114.5 21.8 302 439-911 23-324 (330)
240 3hxj_A Pyrrolo-quinoline quino 99.1 7.4E-09 2.5E-13 113.3 22.0 269 332-655 23-291 (330)
241 1fwx_A Nitrous oxide reductase 99.0 1E-07 3.5E-12 107.3 29.4 344 450-915 16-435 (595)
242 1fwx_A Nitrous oxide reductase 99.0 1.4E-08 4.9E-13 114.2 21.1 227 802-1045 90-407 (595)
243 2hz6_A Endoplasmic reticulum t 99.0 4.3E-10 1.5E-14 124.5 8.2 190 401-612 8-201 (369)
244 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00024 8.1E-09 83.6 65.1 531 342-965 8-554 (628)
245 3ei3_A DNA damage-binding prot 99.0 0.00049 1.7E-08 86.4 65.2 570 394-1057 330-1000(1158)
246 1kv9_A Type II quinohemoprotei 98.9 1E-06 3.4E-11 105.4 35.2 375 451-899 68-520 (668)
247 3s94_A LRP-6, low-density lipo 98.9 0.00033 1.1E-08 82.2 59.9 501 390-961 39-552 (619)
248 1npe_A Nidogen, entactin; glyc 98.9 3.9E-06 1.3E-10 88.1 34.3 223 391-629 36-263 (267)
249 3ei3_A DNA damage-binding prot 98.9 0.00072 2.5E-08 84.9 64.6 552 391-1001 426-1060(1158)
250 1npe_A Nidogen, entactin; glyc 98.9 5.2E-06 1.8E-10 87.1 34.1 255 403-669 2-261 (267)
251 2hz6_A Endoplasmic reticulum t 98.9 8.6E-10 3E-14 122.0 4.9 190 849-1064 8-200 (369)
252 2iwa_A Glutamine cyclotransfer 98.8 1.1E-06 3.6E-11 89.9 23.2 200 798-1005 22-239 (266)
253 2ad6_A Methanol dehydrogenase 98.8 1.5E-05 5E-10 93.1 36.0 378 451-897 64-523 (571)
254 1kv9_A Type II quinohemoprotei 98.8 1.8E-06 6E-11 103.3 28.8 288 344-657 69-498 (668)
255 1w6s_A Methanol dehydrogenase 98.7 8.5E-06 2.9E-10 94.9 32.9 193 816-1012 181-512 (599)
256 1flg_A Protein (quinoprotein e 98.7 3.7E-05 1.2E-09 89.8 37.7 378 452-896 71-544 (582)
257 2iwa_A Glutamine cyclotransfer 98.7 2.2E-06 7.6E-11 87.5 23.6 217 827-1057 9-238 (266)
258 1w6s_A Methanol dehydrogenase 98.7 3.6E-05 1.2E-09 89.6 36.9 382 451-895 64-530 (599)
259 2ad6_A Methanol dehydrogenase 98.7 1.7E-05 6E-10 92.5 32.2 236 402-646 62-415 (571)
260 3ott_A Two-component system se 98.6 0.0037 1.3E-07 76.4 70.7 570 328-1054 21-624 (758)
261 2xe4_A Oligopeptidase B; hydro 98.6 6.8E-06 2.3E-10 100.0 26.7 250 330-606 175-461 (751)
262 3nol_A Glutamine cyclotransfer 98.6 5.2E-06 1.8E-10 83.4 21.0 185 438-637 45-245 (262)
263 1flg_A Protein (quinoprotein e 98.6 5.5E-05 1.9E-09 88.3 32.8 205 403-613 69-365 (582)
264 3nol_A Glutamine cyclotransfer 98.5 1.6E-05 5.5E-10 79.9 22.9 186 391-592 43-244 (262)
265 3nok_A Glutaminyl cyclase; bet 98.5 2E-05 7E-10 79.1 23.1 186 390-592 54-254 (268)
266 2fp8_A Strictosidine synthase; 98.5 5.4E-05 1.8E-09 81.8 28.6 263 324-603 14-313 (322)
267 2fp8_A Strictosidine synthase; 98.5 2.2E-05 7.6E-10 84.9 25.4 245 386-647 14-313 (322)
268 2p4o_A Hypothetical protein; p 98.5 6.5E-05 2.2E-09 80.4 28.7 229 391-638 32-279 (306)
269 1k3i_A Galactose oxidase precu 98.5 7.7E-06 2.6E-10 98.1 22.8 277 333-636 190-530 (656)
270 3mbr_X Glutamine cyclotransfer 98.4 5.7E-05 2E-09 75.3 24.4 188 389-592 19-223 (243)
271 3nok_A Glutaminyl cyclase; bet 98.4 6.6E-06 2.2E-10 82.6 17.4 183 798-992 56-254 (268)
272 2p4o_A Hypothetical protein; p 98.4 7.3E-05 2.5E-09 80.0 27.2 229 797-1047 32-279 (306)
273 2xbg_A YCF48-like protein; pho 98.4 0.00052 1.8E-08 74.0 33.7 235 796-1054 79-320 (327)
274 1ijq_A LDL receptor, low-densi 98.4 0.00062 2.1E-08 72.9 33.9 238 404-654 3-245 (316)
275 3ott_A Two-component system se 98.4 0.012 4.1E-07 71.8 62.1 532 329-1002 63-625 (758)
276 3v64_C Agrin; beta propeller, 98.4 0.00053 1.8E-08 74.5 33.4 249 328-611 33-283 (349)
277 1k3i_A Galactose oxidase precu 98.4 5.9E-05 2E-09 90.4 27.8 120 528-648 190-324 (656)
278 3qqz_A Putative uncharacterize 98.4 0.00023 7.9E-09 72.2 27.5 208 322-556 20-251 (255)
279 3v65_B Low-density lipoprotein 98.4 0.00042 1.4E-08 76.6 32.4 248 330-612 78-327 (386)
280 3v64_C Agrin; beta propeller, 98.4 0.00053 1.8E-08 74.6 32.3 248 392-655 35-283 (349)
281 3v65_B Low-density lipoprotein 98.4 0.00036 1.2E-08 77.1 31.3 247 394-656 80-327 (386)
282 3mbr_X Glutamine cyclotransfer 98.4 7.5E-05 2.6E-09 74.5 22.9 187 796-992 20-223 (243)
283 3qqz_A Putative uncharacterize 98.4 0.00037 1.3E-08 70.7 28.4 218 832-1054 21-251 (255)
284 2xe4_A Oligopeptidase B; hydro 98.3 0.00011 3.9E-09 89.2 28.8 201 388-601 170-398 (751)
285 3p5b_L Low density lipoprotein 98.3 0.0011 3.9E-08 73.4 33.9 248 404-664 85-337 (400)
286 1ijq_A LDL receptor, low-densi 98.3 0.0016 5.4E-08 69.7 33.2 232 351-611 10-246 (316)
287 2xbg_A YCF48-like protein; pho 98.2 0.0037 1.3E-07 67.2 33.2 282 329-645 36-320 (327)
288 4hw6_A Hypothetical protein, I 98.1 0.00045 1.5E-08 77.4 26.1 248 798-1055 140-432 (433)
289 3tc9_A Hypothetical hydrolase; 98.1 0.00068 2.3E-08 76.0 26.8 246 798-1055 138-429 (430)
290 3sov_A LRP-6, low-density lipo 98.0 0.006 2E-07 65.0 31.1 239 404-655 6-246 (318)
291 3p5b_L Low density lipoprotein 98.0 0.0063 2.2E-07 67.3 32.4 250 332-611 76-328 (400)
292 3tc9_A Hypothetical hydrolase; 98.0 0.0023 8E-08 71.6 28.6 239 330-602 138-429 (430)
293 3sov_A LRP-6, low-density lipo 98.0 0.006 2E-07 65.0 30.4 232 350-611 12-246 (318)
294 3m0c_C LDL receptor, low-densi 98.0 0.0063 2.2E-07 73.1 33.1 238 404-655 397-640 (791)
295 4hw6_A Hypothetical protein, I 97.9 0.0022 7.6E-08 71.7 26.3 239 330-602 140-432 (433)
296 3m0c_C LDL receptor, low-densi 97.9 0.013 4.5E-07 70.3 34.0 214 390-611 423-640 (791)
297 3amr_A 3-phytase; beta-propell 97.9 0.0053 1.8E-07 64.5 25.9 195 808-1011 40-272 (355)
298 2xzh_A Clathrin heavy chain 1; 97.8 0.037 1.3E-06 56.8 31.4 236 334-604 72-333 (365)
299 3kya_A Putative phosphatase; s 97.8 0.012 4.1E-07 65.7 28.9 253 330-608 140-480 (496)
300 3kya_A Putative phosphatase; s 97.8 0.007 2.4E-07 67.6 26.8 250 392-651 140-479 (496)
301 3amr_A 3-phytase; beta-propell 97.8 0.0063 2.2E-07 63.9 24.4 193 451-654 42-271 (355)
302 1n7d_A LDL receptor, low-densi 97.7 0.00021 7.1E-09 85.5 13.9 234 411-656 385-623 (699)
303 2xzh_A Clathrin heavy chain 1; 97.7 0.064 2.2E-06 55.1 34.4 231 801-1057 71-333 (365)
304 2ism_A Putative oxidoreductase 97.7 0.014 4.7E-07 63.3 26.9 228 798-1044 32-333 (352)
305 1bpo_A Protein (clathrin); cla 97.6 0.078 2.7E-06 56.7 30.3 238 333-605 70-333 (494)
306 2p9w_A MAL S 1 allergenic prot 97.6 0.0056 1.9E-07 63.7 21.4 201 799-1003 15-265 (334)
307 3a9g_A Putative uncharacterize 97.6 0.018 6.2E-07 62.3 26.5 228 798-1044 30-330 (354)
308 1bpo_A Protein (clathrin); cla 97.6 0.13 4.3E-06 55.2 34.5 231 801-1057 70-332 (494)
309 1n7d_A LDL receptor, low-densi 97.5 0.0004 1.4E-08 83.1 12.9 205 797-1011 406-622 (699)
310 2ism_A Putative oxidoreductase 97.4 0.078 2.7E-06 57.3 27.7 232 329-591 31-333 (352)
311 3a9g_A Putative uncharacterize 97.4 0.14 4.6E-06 55.4 29.5 232 328-591 28-330 (354)
312 2g8s_A Glucose/sorbosone dehyd 97.3 0.03 1E-06 60.7 23.8 237 798-1054 19-350 (353)
313 2p9w_A MAL S 1 allergenic prot 97.3 0.088 3E-06 54.8 25.8 171 325-513 9-216 (334)
314 3pbp_A Nucleoporin NUP82; beta 97.3 0.011 3.7E-07 63.3 18.2 110 801-912 25-159 (452)
315 2vpj_A Kelch-like protein 12; 97.2 0.026 9E-07 59.7 20.8 235 401-649 14-280 (301)
316 2vpj_A Kelch-like protein 12; 97.1 0.031 1.1E-06 59.1 20.4 195 401-607 62-282 (301)
317 3ii7_A Kelch-like protein 7; p 97.1 0.11 3.7E-06 55.0 24.6 236 342-608 13-277 (306)
318 3das_A Putative oxidoreductase 97.0 0.44 1.5E-05 50.5 28.5 99 799-899 204-326 (347)
319 3ii7_A Kelch-like protein 7; p 97.0 0.049 1.7E-06 57.8 21.2 234 403-650 13-275 (306)
320 2xn4_A Kelch-like protein 2; s 97.0 0.058 2E-06 57.0 21.7 234 402-649 16-278 (302)
321 2g8s_A Glucose/sorbosone dehyd 96.9 0.25 8.6E-06 53.3 25.7 233 391-634 18-340 (353)
322 4asc_A Kelch repeat and BTB do 96.8 0.12 4E-06 55.0 22.2 232 405-651 8-281 (315)
323 3sbq_A Nitrous-oxide reductase 96.8 0.38 1.3E-05 53.2 25.3 114 797-913 323-480 (638)
324 2xn4_A Kelch-like protein 2; s 96.7 0.11 3.8E-06 54.8 20.9 195 401-607 61-280 (302)
325 3sre_A PON1, serum paraoxonase 96.7 0.85 2.9E-05 48.6 29.5 207 392-611 51-308 (355)
326 3sre_A PON1, serum paraoxonase 96.7 0.39 1.3E-05 51.2 24.2 175 858-1046 81-287 (355)
327 1tl2_A L10, protein (tachylect 96.6 0.026 8.9E-07 54.4 12.8 184 849-1049 3-203 (236)
328 1xi4_A Clathrin heavy chain; a 96.6 0.13 4.4E-06 63.8 21.8 233 801-1057 70-332 (1630)
329 1cru_A Protein (soluble quinop 96.5 0.8 2.7E-05 51.1 26.5 103 798-900 28-163 (454)
330 4asc_A Kelch repeat and BTB do 96.5 0.49 1.7E-05 50.0 24.1 235 343-609 7-283 (315)
331 1zgk_A Kelch-like ECH-associat 96.4 0.13 4.5E-06 54.4 18.9 238 803-1067 20-296 (308)
332 1zgk_A Kelch-like ECH-associat 96.4 0.12 4E-06 54.8 18.4 238 399-650 22-290 (308)
333 2woz_A Kelch repeat and BTB do 96.2 0.45 1.5E-05 50.5 21.8 227 413-652 25-292 (318)
334 3pbp_A Nucleoporin NUP82; beta 96.2 0.42 1.4E-05 51.3 20.4 156 889-1053 29-209 (452)
335 2woz_A Kelch repeat and BTB do 96.1 0.76 2.6E-05 48.7 23.2 235 343-609 18-293 (318)
336 3das_A Putative oxidoreductase 96.1 1.9 6.5E-05 45.7 29.7 122 319-456 22-158 (347)
337 1xi4_A Clathrin heavy chain; a 96.0 0.25 8.5E-06 61.3 20.0 238 334-606 71-334 (1630)
338 1tl2_A L10, protein (tachylect 95.8 0.087 3E-06 50.9 12.2 145 839-996 42-203 (236)
339 2be1_A Serine/threonine-protei 95.6 0.08 2.7E-06 55.9 12.3 198 851-1061 11-236 (339)
340 2uvk_A YJHT; unknown function, 95.6 0.6 2E-05 50.5 20.0 148 503-654 168-349 (357)
341 2uvk_A YJHT; unknown function, 95.5 0.63 2.1E-05 50.3 19.8 242 806-1068 18-352 (357)
342 3s25_A Hypothetical 7-bladed b 95.4 2.9 0.0001 43.4 23.3 183 333-561 57-258 (302)
343 2j4b_A TAF5, transcription ini 95.3 0.008 2.7E-07 53.8 2.8 96 66-178 33-134 (138)
344 1cru_A Protein (soluble quinop 95.2 1.1 3.8E-05 49.9 20.4 111 880-992 26-163 (454)
345 3s25_A Hypothetical 7-bladed b 95.0 4.1 0.00014 42.4 28.7 180 396-604 58-256 (302)
346 2be1_A Serine/threonine-protei 94.9 0.07 2.4E-06 56.4 9.0 194 451-652 12-236 (339)
347 2nxp_A Transcription initiatio 94.9 0.028 9.5E-07 51.7 5.2 95 66-176 52-152 (156)
348 3sbq_A Nitrous-oxide reductase 93.2 6.3 0.00021 43.8 19.9 194 807-1004 141-409 (638)
349 2wg3_C Hedgehog-interacting pr 93.1 13 0.00045 41.2 26.2 56 391-446 14-79 (463)
350 2j49_A Transcription initiatio 92.0 0.019 6.4E-07 51.9 -1.2 100 66-179 35-140 (148)
351 4hvt_A Ritya.17583.B, post-pro 91.9 24 0.00083 41.5 27.2 240 336-602 137-429 (711)
352 2zwa_A Leucine carboxyl methyl 91.8 5.6 0.00019 47.2 19.5 196 806-1007 396-639 (695)
353 3qhy_B Beta-lactamase inhibito 91.0 15 0.00051 37.6 19.5 222 330-603 25-246 (282)
354 3qhy_B Beta-lactamase inhibito 90.8 9.7 0.00033 39.0 17.9 224 798-1058 25-248 (282)
355 2zwa_A Leucine carboxyl methyl 90.8 8.7 0.0003 45.5 19.8 200 445-650 396-638 (695)
356 4hvt_A Ritya.17583.B, post-pro 90.6 15 0.00051 43.3 21.2 239 398-646 137-429 (711)
357 3b7f_A Glycosyl hydrolase, BNR 89.6 26 0.00088 37.9 27.3 258 796-1063 54-377 (394)
358 3q6k_A 43.2 kDa salivary prote 88.6 13 0.00045 39.6 16.9 169 818-990 124-341 (381)
359 3q6k_A 43.2 kDa salivary prote 88.1 30 0.001 36.8 21.7 171 460-633 124-340 (381)
360 3no0_A DNA gyrase subunit A; D 80.5 52 0.0018 33.3 20.6 197 801-1007 29-250 (276)
361 4gq2_M Nucleoporin NUP120; bet 79.5 6.6 0.00023 48.3 11.1 40 973-1012 236-275 (950)
362 3uc1_A DNA gyrase subunit A; D 78.5 68 0.0023 33.4 25.3 158 796-960 94-279 (327)
363 2wg3_C Hedgehog-interacting pr 78.4 86 0.0029 34.6 29.3 103 798-902 15-160 (463)
364 3kci_A Probable E3 ubiquitin-p 77.7 81 0.0028 33.9 26.4 162 731-910 107-292 (389)
365 4gq2_M Nucleoporin NUP120; bet 72.5 73 0.0025 39.1 17.7 37 839-876 237-273 (950)
366 3no0_A DNA gyrase subunit A; D 71.1 92 0.0031 31.5 20.4 203 839-1055 25-245 (276)
367 3kci_A Probable E3 ubiquitin-p 71.0 1.2E+02 0.0039 32.6 25.5 195 798-1003 106-345 (389)
368 1zi0_A DNA gyrase subunit A; b 68.3 1.1E+02 0.0039 31.4 26.0 151 739-911 108-277 (307)
369 2xtc_A F-box-like/WD repeat-co 66.6 3.2 0.00011 33.1 2.4 27 1-27 1-27 (90)
370 3b7f_A Glycosyl hydrolase, BNR 59.2 1.9E+02 0.0064 30.8 34.4 263 390-666 54-390 (394)
371 2wpv_A GET4, UPF0363 protein Y 56.4 24 0.00081 36.4 7.5 113 29-181 14-127 (312)
372 3zwu_A Alkaline phosphatase PH 54.4 22 0.00074 40.6 7.5 58 933-990 478-548 (592)
373 4a9v_A PHOX; hydrolase, beta-p 54.3 25 0.00087 39.4 7.7 60 932-991 477-549 (592)
374 3f7f_A Nucleoporin NUP120; nuc 54.0 31 0.001 40.0 8.6 37 974-1012 223-259 (729)
375 2zux_A YESW protein; beta-prop 53.2 2.8E+02 0.0096 31.0 26.3 166 433-613 176-410 (591)
376 1uuj_A Platelet-activating fac 51.3 3.8 0.00013 32.5 0.5 51 4-54 9-67 (88)
377 3lpz_A GET4 (YOR164C homolog); 48.5 35 0.0012 35.4 7.2 111 29-179 13-127 (336)
378 4fhn_B Nucleoporin NUP120; pro 47.6 8.9 0.0003 48.5 3.3 40 974-1013 239-278 (1139)
379 3bu8_A Telomeric repeat-bindin 47.4 38 0.0013 32.0 6.4 83 56-148 103-186 (235)
380 2zux_A YESW protein; beta-prop 46.1 3.6E+02 0.012 30.2 26.5 295 327-649 177-534 (591)
381 3gyz_A Chaperone protein IPGC; 45.8 47 0.0016 29.9 7.1 103 6-115 9-116 (151)
382 3uc1_A DNA gyrase subunit A; D 45.1 2.8E+02 0.0096 28.7 26.1 165 837-1007 94-283 (327)
383 1zi0_A DNA gyrase subunit A; b 44.7 2.7E+02 0.0093 28.4 27.1 193 400-602 1-225 (307)
384 1wp5_A Topoisomerase IV; broke 44.1 2.9E+02 0.0098 28.5 25.6 194 400-603 3-225 (323)
385 3f7f_A Nucleoporin NUP120; nuc 43.5 2.5E+02 0.0084 32.6 13.8 30 849-878 230-259 (729)
386 3mez_B Mannose-specific lectin 43.5 66 0.0022 27.2 7.2 90 941-1065 23-113 (113)
387 3l6v_A GYRA, DNA gyrase subuni 43.2 3.2E+02 0.011 28.8 28.2 64 581-645 4-74 (370)
388 1suu_A DNA gyrase subunit A; t 41.8 3E+02 0.01 28.1 28.5 194 807-1007 7-235 (312)
389 4fhn_B Nucleoporin NUP120; pro 41.1 77 0.0026 39.9 10.4 38 839-877 239-276 (1139)
390 3zwu_A Alkaline phosphatase PH 41.0 79 0.0027 36.0 9.3 64 525-590 477-548 (592)
391 1wp5_A Topoisomerase IV; broke 39.5 3.4E+02 0.012 28.0 26.1 237 806-1055 3-276 (323)
392 4a9v_A PHOX; hydrolase, beta-p 39.0 1.2E+02 0.004 34.2 10.0 64 525-590 477-548 (592)
393 4d9s_A UVB-resistance protein 34.1 4.6E+02 0.016 27.9 32.6 201 838-1058 121-359 (406)
394 2zuy_A YESX protein; beta-prop 34.0 5.5E+02 0.019 28.9 25.3 42 572-613 367-414 (620)
395 2ovj_A Mgcracgap, RAC GTPase-a 32.7 53 0.0018 31.3 5.4 86 8-98 20-120 (201)
396 2ee4_A RHO GTPase activating p 31.9 95 0.0033 29.7 7.2 102 7-113 29-145 (209)
397 3byi_A RHO GTPase activating p 30.9 58 0.002 31.4 5.4 86 8-98 38-139 (214)
398 2k9m_A RNA polymerase sigma fa 30.3 48 0.0016 28.9 4.1 23 2-24 18-40 (130)
399 3ma5_A Tetratricopeptide repea 29.6 56 0.0019 26.5 4.5 54 37-96 16-69 (100)
400 4gco_A Protein STI-1; structur 28.9 58 0.002 27.9 4.6 33 81-114 60-92 (126)
401 4ga2_A E3 SUMO-protein ligase 28.8 2.1E+02 0.0071 25.1 8.7 72 37-115 40-111 (150)
402 4h3o_A Lectin; cadmium, plant 28.4 2.5E+02 0.0085 23.1 10.1 25 800-825 53-77 (105)
403 3iug_A RHO/CDC42/RAC GTPase-ac 27.3 77 0.0026 30.9 5.7 99 8-114 40-154 (229)
404 3fk2_A Glucocorticoid receptor 26.9 71 0.0024 31.6 5.4 99 8-114 71-184 (246)
405 1suu_A DNA gyrase subunit A; t 26.8 5.2E+02 0.018 26.3 29.2 117 838-960 100-231 (312)
406 3msx_B RHO GTPase-activating p 26.6 93 0.0032 29.6 6.0 99 8-114 29-140 (201)
407 1kdl_A YOPD protein; yersinia, 26.1 36 0.0012 19.4 1.6 15 4-18 3-17 (26)
408 3cxl_A N-chimerin; SH2, RHO-GA 25.9 38 0.0013 37.4 3.5 86 8-98 288-390 (463)
409 4asv_A Small glutamine-rich te 25.0 34 0.0012 27.2 2.0 19 1-19 15-33 (92)
410 2lni_A Stress-induced-phosphop 24.5 1.3E+02 0.0045 25.1 6.3 73 36-115 24-96 (133)
411 4gco_A Protein STI-1; structur 24.3 92 0.0032 26.6 5.1 70 37-113 56-125 (126)
412 3mez_A Mannose-specific lectin 22.7 2.9E+02 0.01 22.9 7.7 79 884-989 22-100 (111)
413 1hxi_A PEX5, peroxisome target 22.7 1.3E+02 0.0044 25.3 5.7 73 36-115 25-97 (121)
414 2cn3_A Xyloglucanase, beta-1,4 22.1 9.8E+02 0.034 27.9 37.5 62 573-635 23-91 (737)
415 2dba_A Smooth muscle cell asso 21.4 1.2E+02 0.004 26.1 5.4 76 36-115 36-111 (148)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-68 Score=645.35 Aligned_cols=568 Identities=22% Similarity=0.344 Sum_probs=484.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+.|+||++.|+|++|||||++ ||+|+.|++|+|||. +++++.. +.+|...|.+++||
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fs 66 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFS 66 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEEC
T ss_pred EeeEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEEC
Confidence 34669999999999999999995 999999999999995 6776654 77999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
|||++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+||++ +|++++.|+.+++|+.. +.......+|.
T Consensus 67 pdg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~ 139 (577)
T 2ymu_A 67 PDGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHS 139 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCC
Confidence 999999999999999999964 44333 6889999999999999999 89999999999999954 55567778899
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
..+..+.+.+ ++..+++++.++.+++|+... ........+...+.+++++|+++++++++. ++.|++||. ++
T Consensus 140 ~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~ 211 (577)
T 2ymu_A 140 SSVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NG 211 (577)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TS
T ss_pred Cceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CC
Confidence 9999999854 667899999999999998543 455566778889999999999999999986 778999995 57
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
+.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.
T Consensus 212 ~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 212 QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSC
T ss_pred cEEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCE
Confidence 7888888887 89999999999999999999999999996 56677777655 346899999999999999999999
Q ss_pred EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
|++|+... +....+.
T Consensus 286 i~~w~~~~-~~~~~~~---------------------------------------------------------------- 300 (577)
T 2ymu_A 286 VKLWNRNG-QLLQTLT---------------------------------------------------------------- 300 (577)
T ss_dssp EEEEETTS-CEEEEEC----------------------------------------------------------------
T ss_pred EEEEeCCC-cEEEEEe----------------------------------------------------------------
Confidence 99999643 2222222
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
+|...|.+++|+|+++.+++++.||.+++|+..... +... . +|...+
T Consensus 301 ------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~~~~--~--~~~~~v 347 (577)
T 2ymu_A 301 ------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------LQTL--T--GHSSSV 347 (577)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------EEEE--C--CCSSCE
T ss_pred ------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------eEEE--e--CCCCCE
Confidence 255678888899999999999999999999864321 1111 1 378899
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001396 800 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
.+++|+|+++++++++ ++.|++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence 9999999999999998 699999995 5788889999999999999999 8999999999999999996 5788899999
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEE
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 957 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd 957 (1086)
|...|++++|+||+++|++++.|++|++||.... .+....+|.. .|.+++|+|||++|++ +.|+.|++||
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~ 495 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWN 495 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence 9999999999999999999999999999997642 2333444443 7999999999999999 6789999999
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1037 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1037 (1086)
. +++++.. +.+|...|++++|+|||++|++++.||.|++||+ +++.+..+.. |... +.+++|+| |+
T Consensus 496 ~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~--------h~~~--v~~~~fs~-dg 561 (577)
T 2ymu_A 496 R-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--------HSSS--VWGVAFSP-DG 561 (577)
T ss_dssp T-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC--------CSSC--EEEEEECT-TS
T ss_pred C-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC--------CCCC--EEEEEEcC-CC
Confidence 5 5777765 5689999999999999999999999999999996 5777766651 2333 45899999 78
Q ss_pred CEEEEEeCCCcEEEEc
Q 001396 1038 TQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 1038 ~~l~~~~~dg~v~vw~ 1053 (1086)
++|++++.||+|++||
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-67 Score=631.86 Aligned_cols=577 Identities=15% Similarity=0.182 Sum_probs=478.1
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
..+++.+.+++|||||++ ||+++ ++.|+|||+.+++.... +.+|...|++++|||||++
T Consensus 15 ~~~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~ 73 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYY 73 (611)
T ss_dssp CCCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred CcccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcE
Confidence 355778999999999985 78887 57999999998877654 7899999999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEeecCCc
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|||+ .|++++.+ +.|++|| +++.+..+.+|..
T Consensus 74 lasg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~ 148 (611)
T 1nr0_A 74 CASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQAR 148 (611)
T ss_dssp EEEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSS
T ss_pred EEEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCC
Confidence 9999999999999997665432 235779999999999999999 67777754 3677776 6778888999999
Q ss_pred ceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 481 PVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.|++++|+| ++. .|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++. |+.|++||..++
T Consensus 149 ~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g 222 (611)
T 1nr0_A 149 AMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDG 222 (611)
T ss_dssp CEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTC
T ss_pred CceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCC
Confidence 999999976 444 6999999999999999988888899999999999999999999999986 778999999999
Q ss_pred eeeeEEe-------cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCC-CCCceEEEecCCCEE
Q 001396 560 AIKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLL 631 (1086)
Q Consensus 560 ~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l 631 (1086)
+.+..+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+
T Consensus 223 ~~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 297 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQAL 297 (611)
T ss_dssp CEEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCE
T ss_pred cEeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEE
Confidence 9888874 455 89999999999999999999999999999999999888654221 12334444 78899
Q ss_pred EEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 632 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
++++.|+.+++|+...+.....+.+|...|.+++|+ |+|+++++++.|++|++||+..
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999988888889999999999996 7899999999999999999864
Q ss_pred cCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCC
Q 001396 712 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 791 (1086)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 791 (1086)
.... ......|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 356 ~~~~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~-- 409 (611)
T 1nr0_A 356 GISN-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK-- 409 (611)
T ss_dssp CCEE-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE--
T ss_pred Ccee-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee--
Confidence 3221 11123588899999999876 588999999999998765321100 0 00001
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.+++
T Consensus 410 ---~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 410 ---LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp ---CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTE
T ss_pred ---cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCc
Confidence 23346789999999988888889999998 344 45554 778899999999 89999999999999999998765
Q ss_pred e--EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-
Q 001396 872 V--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 947 (1086)
Q Consensus 872 ~--~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 947 (1086)
. +.. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|. ..|.+++|||||++||+
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATG 554 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEE
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEE
Confidence 4 334 67999999999999999999999999999999986 33211 00122344 38999999999999999
Q ss_pred EeCCeEEEEEcCCcccee-ccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 948 VHETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 948 ~~d~~i~vwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
+.|++|++|++.++.... ....+| ...|.+++|+||++ |++++.|++|++|+++
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 689999999999876433 446789 89999999999998 9999999999999974
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-63 Score=598.41 Aligned_cols=555 Identities=22% Similarity=0.343 Sum_probs=468.9
Q ss_pred CCCCCCCCccccccccccCCCccCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeee
Q 001396 291 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 370 (1086)
Q Consensus 291 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~ 370 (1086)
+..|||....+..-.. .....+.+...+++++|.+|++.|++++|||||+ +||+|+.|++|+|||. +++.+..
T Consensus 21 ~~a~spdg~~las~~~-d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~---- 93 (577)
T 2ymu_A 21 GVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT---- 93 (577)
T ss_dssp EEEECTTSSCEEEEET-TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE----
T ss_pred EEEECCCCCEEEEEeC-CCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE----
Confidence 5678887665433211 1222333456688999999999999999999998 5899999999999996 5665544
Q ss_pred eeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcE
Q 001396 371 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l 450 (1086)
+.+|...|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+|++.
T Consensus 94 ---------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-- 152 (577)
T 2ymu_A 94 ---------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ-- 152 (577)
T ss_dssp ---------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--
T ss_pred ---------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--
Confidence 77899999999999999999999999999999976543 224678999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
.+++++.++.+++|+. .+........|...|.++++.+ ++.+|++++.||.|++||. +.+....+..+...+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~ 228 (577)
T 2ymu_A 153 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 228 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEE
Confidence 7899999999999994 5566777788999999999854 6789999999999999995 4566777888999999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
|+|++++|++++. ++.|++||. +++.+..+.+|. ..|.+++|+|+++.+++++.|+.|++||. +++.+..+
T Consensus 229 ~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~ 299 (577)
T 2ymu_A 229 FSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL 299 (577)
T ss_dssp ECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred ECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEE
Confidence 9999999999886 677999995 567788888877 89999999999999999999999999996 45667777
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCC
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 690 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~ 690 (1086)
..+ ...|.+++|+|+++++++++.|+.|++|+.... .+..+.
T Consensus 300 ~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~----------------------------------- 341 (577)
T 2ymu_A 300 TGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLT----------------------------------- 341 (577)
T ss_dssp CCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC-----------------------------------
T ss_pred ecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEe-----------------------------------
Confidence 655 446899999999999999999999999997643 121111
Q ss_pred CcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCccccc
Q 001396 691 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 770 (1086)
Q Consensus 691 d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 770 (1086)
+|...+.+++|+|+++.+++++.+|.+++|+....
T Consensus 342 -----------------------------------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~---------- 376 (577)
T 2ymu_A 342 -----------------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------- 376 (577)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------
T ss_pred -----------------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC----------
Confidence 15567888999999999999999999999974321
Q ss_pred ccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCC
Q 001396 771 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 849 (1086)
Q Consensus 771 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 849 (1086)
.+.... +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus 377 -------------~~~~~~----~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d 437 (577)
T 2ymu_A 377 -------------LLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-D 437 (577)
T ss_dssp -------------EEEEEE----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------EEEEec----CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-C
Confidence 122211 3788999999999999999998 799999995 5788889999999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
+++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... + .++.+.+|..
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~- 509 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS- 509 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS-
T ss_pred CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC-
Confidence 999999999999999996 4778889999999999999999999999999999999999654 2 3444555554
Q ss_pred CCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEE
Q 001396 930 APSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1000 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd 1000 (1086)
.|++++|+|||++||+ +.|+.|++||. +++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus 510 --~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 510 --SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 7999999999999998 67899999996 5777766 568999999999999999999999999999997
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-64 Score=665.83 Aligned_cols=619 Identities=14% Similarity=0.176 Sum_probs=515.3
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
....+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 3456789999999999999998 589999999999999999988765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++..++++|+.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987665 67899999999999997655589999999999999999999999999999
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------------CCceEEEEEecCCCEEEEEeeCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+.|++++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 6779999999999999999988766554322 23678899999999999987
Q ss_pred CceeEEEEeCCCCeeeeEEe-cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 547 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.+.+||..++..+..+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..|. ..|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEEC
Confidence 5579999999998888776 444 899999999999999999999999999999999999888664 469999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
|+++++++++.||.|++|++.+......... .......+ .+++..++.......+.
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEE
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceE
Confidence 9999999999999999999764322111110 00111111 13344445555555555
Q ss_pred eeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCce
Q 001396 706 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 785 (1086)
Q Consensus 706 vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 785 (1086)
++....... . ..+...+.+++++|+++.+++++.+|.+++|++.... ..
T Consensus 948 ~~~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~ 996 (1249)
T 3sfz_A 948 LIAGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VF 996 (1249)
T ss_dssp EEEESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CE
T ss_pred EEecCcceE---E------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------ee
Confidence 555332111 0 1134679999999999999999999999999875432 12
Q ss_pred eeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001396 786 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 864 (1086)
Q Consensus 786 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 864 (1086)
... . +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++++.||.|++
T Consensus 997 ~~~--~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 997 SSG--V--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp EEC--C--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred eec--c--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence 221 1 4888999999999999999998 7999999999988764 557899999999999 66 5678999999999
Q ss_pred EEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 865 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 865 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
||+.+++.+..+.+|.+.|++++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|+|||++
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence 9999999999999999999999999999999999999999999998855 3445556554 7999999999999
Q ss_pred EEE-EeCCeEEEEEcCCccceecc--------ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccc
Q 001396 945 FLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1015 (1086)
Q Consensus 945 l~~-~~d~~i~vwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~ 1015 (1086)
|++ +.||.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+..
T Consensus 1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~--- 1216 (1249)
T 3sfz_A 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT--- 1216 (1249)
T ss_dssp EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC---
T ss_pred EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec---
Confidence 999 57899999999999887764 256899999999999999999885 8999999999988766541
Q ss_pred cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 1016 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
+.. ...+++|+| |+.+|++++.||.|++|++.+
T Consensus 1217 -----~~~--~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1217 -----NGT--NLKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp -----SSC--CCCCCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred -----cCC--cccEEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 122 234688999 789999999999999999853
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.4e-64 Score=603.29 Aligned_cols=573 Identities=11% Similarity=0.108 Sum_probs=456.8
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
..+.+.+.+++|+|||++||+++ ++.|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 88 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence 34577889999999999999997 4699999998876554 6889999999999999999 8999999999999999
Q ss_pred CCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCC-EEE
Q 001396 467 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF 539 (1086)
Q Consensus 467 ~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~ 539 (1086)
.+++ ....+.+|.++|.+++|+| ++++|++++.+ +.|++|| .+.....+..|...|.+++|+|++. .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 7654 4567889999999999955 77899988865 3677776 4556667788999999999999987 588
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----C
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G 614 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~ 614 (1086)
+++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+... +
T Consensus 165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence 8876 7789999999999999999888 89999999999999999999999999999999988887421 3
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccc---cceeeeEEccCCCceeccccCCeeeecCCCCCC
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS---DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 691 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d 691 (1086)
+...|.+++|+|++++|++++.|++|++||+.+++.+..+..+. .....+. .+
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 293 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT 293 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence 44579999999999999999999999999999887776654321 1111111 24
Q ss_pred cccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccc
Q 001396 692 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 771 (1086)
Q Consensus 692 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 771 (1086)
++.+++++.|+.+++|+...... .....+|...|.+++|+|+|+.+++++.|+.|++|++....
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~------~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~---------- 357 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSI------DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---------- 357 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEE------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------
T ss_pred CCEEEEEeCCCcEEEEeCCCCCc------ceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc----------
Confidence 77899999999999999653221 11123588999999999999999999999999999875432
Q ss_pred cCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEE---EcCCCCCeEEEEEcCC
Q 001396 772 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPH 848 (1086)
Q Consensus 772 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~ 848 (1086)
+.... ..+|...|.+++|++++.++..+.|+.+++|+..++..... .........+++|+|
T Consensus 358 ------------~~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 421 (611)
T 1nr0_A 358 ------------SNRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA- 421 (611)
T ss_dssp ------------EEECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-
T ss_pred ------------eeeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-
Confidence 11111 11488899999999888655555589999999876532110 001234567899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCcc
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 928 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 928 (1086)
+++++++++ ++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... +.. .+|.
T Consensus 422 dg~~~~~~~-~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~- 491 (611)
T 1nr0_A 422 DGDIAVAAC-YKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP- 491 (611)
T ss_dssp TSSCEEEEE-SSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS-
T ss_pred CCcEEEEEe-CceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC-
Confidence 787777664 67899998 344 55555 88899999999999999999999999999998754321 222 2333
Q ss_pred CCCCceEEEEecCCCEEEE-EeCCeEEEEEcCC-ccceec-cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 929 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 929 ~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
..|.+++|||||++|++ +.|++|++|++.+ ++.... ...+|...|.+++|||||++|++++.|++|++||+.++.
T Consensus 492 --~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 492 --AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred --CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 37999999999999999 6889999999987 665544 344599999999999999999999999999999999875
Q ss_pred eee-eeccccccCCCCc-cCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1006 VQC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1006 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
... ... .+ | .. ...+++|+| ++. |++++.||+|++|+++
T Consensus 570 ~~~~~~~------~~-h~~~--~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHPIIIK------GA-HAMS--SVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCCEEET------TS-STTS--CEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred cccchhh------cc-Cccc--CeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 321 111 01 2 22 345899999 566 9999999999999983
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.3e-61 Score=583.39 Aligned_cols=559 Identities=11% Similarity=0.156 Sum_probs=485.5
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC----ceeeeeeeeeeeccccceeeeeeeecCCCcc-EEEEEEC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 399 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s 399 (1086)
..|.+.|.+++|||||++ ||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 468889999999999995 77777 789999999988 65544 7889999 9999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEecCCC-----ccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCC
Q 001396 400 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 468 (1086)
Q Consensus 400 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~ 468 (1086)
| |+++||+|+.||.|+|||+.+++ .......+..|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1122336778999999999999999 78888877 6888887 7
Q ss_pred CceeEEeecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCceeEEecCCCC---ceEEEEEecC-CCEEEEEee
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 543 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d-~~~l~~~~~ 543 (1086)
++.+..+.+|...|.+++|++ ++. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788999999999999999965 444 899999999999999999999999998888 9999999999 999999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEE-e---cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC--CC
Q 001396 544 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 617 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 617 (1086)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 678999999999999888 5 555 899999999 999999999999999999999999988876521 12
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+.++.|+ +++++++++.|+.|++|++.+++.+..+.+|...|.++++ |. +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence 45677775 8999999999999999999999899999999999998887 51 788
Q ss_pred ccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCcee
Q 001396 698 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 777 (1086)
Q Consensus 698 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 777 (1086)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.||.+++|++....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~---------------- 404 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE---------------- 404 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence 9999999999976 111 458899999999 667889999999999999865432
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe
Q 001396 778 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 857 (1086)
Q Consensus 778 ~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 857 (1086)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++
T Consensus 405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~ 463 (615)
T 1pgu_A 405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL 463 (615)
T ss_dssp -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence 1125778999999999999888999999999999988887 88899999998 67999999
Q ss_pred C-CCeEEEEEcCCceeE-EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCC-CccCCCCce
Q 001396 858 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET 934 (1086)
Q Consensus 858 ~-dg~v~iwd~~~~~~~-~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~ 934 (1086)
. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~ 535 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KIN 535 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEE
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---cee
Confidence 9 999999999988766 7788899999999999999999999999999999999865 3344444 443 799
Q ss_pred EEEEec----------CCCEEEE-EeCCeEEEEEcCCc-cceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 935 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 935 ~~~~s~----------dg~~l~~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
+++|+| ++++|++ +.|+.|++||+.++ +++.. +.+|...|++++|+|||+ |++++.||+|++|++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999 9999999 57899999999998 55554 678999999999999999 9999999999999987
Q ss_pred CC
Q 001396 1003 NL 1004 (1086)
Q Consensus 1003 ~~ 1004 (1086)
.+
T Consensus 614 ~~ 615 (615)
T 1pgu_A 614 LE 615 (615)
T ss_dssp --
T ss_pred cC
Confidence 53
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-58 Score=572.26 Aligned_cols=621 Identities=11% Similarity=0.089 Sum_probs=461.5
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
...+|.+.|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-T
T ss_pred cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-C
Confidence 3469999999999999998 69999999999999998776543 224788999999999 8
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----------
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 472 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~---------- 472 (1086)
++||+++.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 899999999999999999987665 343 678999999999999 8999999999999999988764
Q ss_pred -EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC------------------CCceEEEEEec
Q 001396 473 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 533 (1086)
Q Consensus 473 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s~ 533 (1086)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999764 34689999999999 9999998887777655 35799999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeE--Ee---ccc----------ccCCceEEEEEec----CC-CEEEEEECC
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFDT----AK-DQILAAGDD 593 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~~----~~-~~l~~~s~d 593 (1086)
+|++|++++. |+.|++||+++++.+.. +. .|. .+...|.+++|++ ++ ..+++|+.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999986 77899999999887654 21 121 1235799999964 43 456667665
Q ss_pred -----CcEEEEEcC------------------CCeeEEEEcCCCCCCCCceEEEec----------CCCEEEEEECCCcE
Q 001396 594 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 640 (1086)
Q Consensus 594 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i 640 (1086)
+.+.+|++. +++....+... ....+..+.+.+ ++..+++++.|+.|
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 378999852 22334444321 123467777755 34578999999999
Q ss_pred EEEECCCCCeee-------eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 641 KILETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 641 ~iw~~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
++|++.++.... .+..|...|+++++++. ..++|+.....
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~ 423 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSA 423 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhc
Confidence 999998774432 23455566777666521 12334422111
Q ss_pred CccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCC
Q 001396 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 793 (1086)
Q Consensus 714 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 793 (1086)
.... ..+..+|...+.+++|+|+++.+++++.||+|++||+....... ...+... ... ....
T Consensus 424 ~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~-----l~~-~~~~ 485 (902)
T 2oaj_A 424 AQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN-----LSR-TLNK 485 (902)
T ss_dssp TBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE-----HHH-HTTC
T ss_pred ccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee-----chh-hcCC
Confidence 0000 11224577778889999999999999999999999987653210 0000000 000 0011
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCc---------------------------------------------
Q 001396 794 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF--------------------------------------------- 827 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~--------------------------------------------- 827 (1086)
+|...|.+++|+|||++||+++ ||+|+||++.++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 4888999999999999999998 799999999866
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-----Eec-cccCCeEEEEEe-----CCC---C
Q 001396 828 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---N 893 (1086)
Q Consensus 828 ~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~v~~l~~s-----pdg---~ 893 (1086)
+++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++|+|| ||| +
T Consensus 566 ~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred ceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 34678889999999999999 88 99999999999999999877653 343 899999999999 886 8
Q ss_pred EEEEEeCCCcEEEEEC---CCCceeeeeeeeccCCCccC--CCCceEEE-Ee----------------------cCCCEE
Q 001396 894 ILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMTL--APSETHIQ-FH----------------------KDQTRF 945 (1086)
Q Consensus 894 ~l~s~s~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~--~~~v~~~~-~s----------------------~dg~~l 945 (1086)
+|++++.|++|++||+ .+++.. ..+.++... .++|..++ |+ ++|..|
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 718 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL 718 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred EEEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE
Confidence 9999999999999999 554422 222222211 13566666 66 455544
Q ss_pred EEEeCCeEEEEEcCCccceeccccCCccCEEEE---E------EeCCCCEEEEEECCCcEEEEEcCCCceeeeecccccc
Q 001396 946 LLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1016 (1086)
Q Consensus 946 ~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~ 1016 (1086)
++ .+..++||++.++++.+.. .+|...+.++ . |+++|..|++++.||+|++|++++++.+..+......
T Consensus 719 ~~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~ 796 (902)
T 2oaj_A 719 IT-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI 796 (902)
T ss_dssp EE-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC
T ss_pred EE-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccc
Confidence 44 4889999999999998876 4566677776 5 7899999999999999999999999999888732211
Q ss_pred CCCCccCcccceEEEECCCCCCEEEEEeC
Q 001396 1017 RPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1045 (1086)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 1045 (1086)
. .-+....+|.+ +|+.|.-.+.
T Consensus 797 ~------~~~~~~~~~~~-~G~~~~~~~~ 818 (902)
T 2oaj_A 797 A------AKYITESSVLR-NGDIAIRVSE 818 (902)
T ss_dssp C------HHHHTTCEECT-TSCEEEECSS
T ss_pred c------cccccceEEcC-CCCEEEEeCh
Confidence 1 11122345666 5675554433
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-58 Score=609.19 Aligned_cols=588 Identities=16% Similarity=0.190 Sum_probs=498.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+.+|.+.|.+++|||||++||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+|+ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 377999999999999999999999999999999999987655 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999988778889999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccc----------ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++.|++||+.+++....+.... .....+.+++|+|+++.+++++ ++.+.+||+.++.....+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence 7789999999998877665321 1123688999999999999987 689999999999988877532
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
+...+.+++|+|+++++++++.||.|++|++.++..+..+.+|...|.+++|+ |+++.
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~ 896 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSS 896 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCE
Confidence 23568999999999999999999999999999999999999999999999996 77889
Q ss_pred ceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCC
Q 001396 695 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 774 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 774 (1086)
+++++.|+.+++|+.......... .......+.+.+++..+++....+.+.++....
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 953 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT--------------- 953 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESS---------------
T ss_pred EEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCc---------------
Confidence 999999999999997633221111 122334566777777777777776666665332
Q ss_pred ceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEE
Q 001396 775 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 853 (1086)
Q Consensus 775 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l 853 (1086)
+..... +...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|
T Consensus 954 -------~~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 1018 (1249)
T 3sfz_A 954 -------GQIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTL 1018 (1249)
T ss_dssp -------CCEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCE
T ss_pred -------ceEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEE
Confidence 111111 456799999999999999998 69999999999999999999999999999999 89999
Q ss_pred EEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCc
Q 001396 854 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 933 (1086)
Q Consensus 854 asg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 933 (1086)
++++.||.|++||+.+++.. .+.+|...|.+++|+|++ .+++++.||.|++||+.+++. ...+.+|.. .|
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~---~v 1088 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERDFTCHQG---TV 1088 (1249)
T ss_dssp EEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEEEECCSS---CC
T ss_pred EEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEEEcccCC---cE
Confidence 99999999999999998876 456799999999999976 678899999999999998663 233344443 79
Q ss_pred eEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 934 THIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 934 ~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
.+++|+|||+++++ +.|+.|++||+.+++++.. +.+|...|++++|||||++|++++.||+|++||+.+++.+..+.+
T Consensus 1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp CCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecc
Confidence 99999999999998 5889999999999998876 568999999999999999999999999999999999988866532
Q ss_pred ccccCC-CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 1013 TAYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 1013 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
...... ..|.. .+.+++|+| |+.+|++++ |.|++||+.....
T Consensus 1168 ~~~~~~~~~~~~--~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1168 ISVEEGTATHGG--WVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp CC-------CCS--CCCEEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred ccccccccccCc--eEEEEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 221111 11223 345899999 789998885 9999999976554
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-57 Score=552.85 Aligned_cols=555 Identities=11% Similarity=0.108 Sum_probs=468.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC----CccccceEecccccc-EeEEEecC--CCCcEEEEEEeCC
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 458 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~v~~s~--d~~~l~l~s~~~d 458 (1086)
...|.+.|.+++|||||++||+++ ++.|+|||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 5443 68899999 99999999 999 89999999
Q ss_pred CcEEEEeCCCC--------ceeEEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEEecCCCCce
Q 001396 459 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 526 (1086)
Q Consensus 459 ~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~i 526 (1086)
+.|++||+.++ +.+..+..|...|.+++|++ ++.+|++++.+ +.|++|| ..+....+..+...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 67788889999999999954 77899999988 6888886 667788888999999
Q ss_pred EEEEEecCCC-EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCC---ceEEEEEecC-CCEEEEEECCCcEEEEEc
Q 001396 527 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 527 ~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~ 601 (1086)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 7888775 7789999999999999999887 6 8999999999 999999999999999999
Q ss_pred CCCeeEEEE-c---CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccc----cceeeeEEccCCCce
Q 001396 602 NKVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVT 673 (1086)
Q Consensus 602 ~~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~ 673 (1086)
.+++.+..+ . .+ ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-------
T ss_pred CCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-------
Confidence 999999888 3 33 3468999999 99999999999999999999988877776653 33333333
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
+++.++++++.++.+++|++....... ...+|...|.+++| |+ +++++.||.++
T Consensus 307 ----------------~~~~~l~~~~~~g~i~~~d~~~~~~~~------~~~~~~~~v~~~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 307 ----------------TGNGRIISLSLDGTLNFYELGHDEVLK------TISGHNKGITALTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp ----------------EETTEEEEEETTSCEEEEETTEEEEEE------EECCCSSCEEEEET-TT---TEEEETTSCEE
T ss_pred ----------------CCCCeEEEEECCCCEEEEECCCCcEEE------EEeCCCCCEEEEEe-cC---cEEECCCCeEE
Confidence 368889999999999999976532211 11348889999999 88 89999999999
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 832 (1086)
+|++. ++. .+|...|.+++| +++..+++++ |+.+++|++.+++...
T Consensus 361 ~w~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~- 407 (615)
T 1pgu_A 361 EWSSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS- 407 (615)
T ss_dssp ETTTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-
T ss_pred EEEch-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-
Confidence 99854 011 148889999999 5566666666 8999999987654322
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG 911 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~ 911 (1086)
.+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+
T Consensus 408 ------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~ 476 (615)
T 1pgu_A 408 ------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD 476 (615)
T ss_dssp ------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTE
T ss_pred ------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCC
Confidence 778999999 88888877 78999999999999988887 88999999999 899999999 99999999997
Q ss_pred CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC--------
Q 001396 912 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-------- 982 (1086)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-------- 982 (1086)
++... ....++.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 477 ~~~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 477 LEVSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp EEEEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred ccccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence 54211 34444443 7999999999999999 57899999999999998875544999999999999
Q ss_pred --CCCEEEEEECCCcEEEEEcCCC-ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 983 --DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 983 --dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
|+++|++++.||+|++||+.++ +.+..+. .|. -.+.+++|+| ++. |++++.||.|++|++..
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~--~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHK--DGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--------SST--TCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ccCCCEEEEEcCCCcEEEEECCCCceechhhh--------cCc--cceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 5665544 122 2355889999 677 99999999999999853
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-56 Score=554.02 Aligned_cols=594 Identities=9% Similarity=0.042 Sum_probs=436.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
..+|...|.+++|+||+++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45899999999999999999999999999999988765432 235788999999999 77 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-----------EEecCCCCceEEEEEecC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 534 (1086)
+.+++++..+. |...|++++|++ ++.+|++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999886 778999999954 6789999999999999999887653 123557789999999996
Q ss_pred C-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc---------------cccCCceEEEEEecCCCEEEEEECCCcEEE
Q 001396 535 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 535 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 598 (1086)
+ ..+++++. ++.| +||+++++.+..+..+ ..|...|.+++|+|++++|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777664 6789 9999999999888766 122367999999999999999999999999
Q ss_pred EEcCCCeeEEEEcC-----CC-----------CCCCCceEEEec----CC-CEEEEEECC-----CcEEEEECCC-----
Q 001396 599 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 647 (1086)
Q Consensus 599 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~----- 647 (1086)
||+.+++++..... +. +...|.+++|++ ++ .++++|+.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 43 567777665 3788888531
Q ss_pred -------------CCeeeecc-ccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 648 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 648 -------------~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
......+. .+...+..+.+.+..... +.+ ..++..+++++.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~----------~~g--~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY----------FAG--CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH----------HHH--TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC----------cCC--CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11122221 233445555444311000 000 1345577888889999999974221
Q ss_pred Cccc-cccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCC
Q 001396 714 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 792 (1086)
Q Consensus 714 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 792 (1086)
.... .........|...|+++++++... .+|+..... . +... ..+
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l-- 431 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLL-- 431 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSC--
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Ccc--
Confidence 1100 000111123557788888865332 234321100 0 0000 012
Q ss_pred CCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEE----EE--Ec-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 793 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
.+|...+..++|+||++++++++ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|+.||
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 24777788899999999999998 899999999876421 11 11 7888999999999 999999999999
Q ss_pred eEEEEEcCCc---------------------------------------------eeEEEeccccCCeEEEEEeCCCCEE
Q 001396 861 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL 895 (1086)
Q Consensus 861 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~v~~l~~spdg~~l 895 (1086)
+|+|||+.++ +++..+.+|.+.|++|+||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 9999999876 2467888999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCceeeeeeeeccC-CCccCCCCceEEEEe-----cCC---CEEEE-EeCCeEEEEEc---CCcc
Q 001396 896 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 962 (1086)
Q Consensus 896 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----~dg---~~l~~-~~d~~i~vwd~---~~~~ 962 (1086)
|+|+.|++|+|||+.+........+..+. +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999876533211223343 5554 89999999 886 78888 68899999999 7888
Q ss_pred ceeccccCC-----ccCEEEEE-Ee----------------------CCCCEEEEEECCCcEEEEEcCCCceeeeecccc
Q 001396 963 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1014 (1086)
Q Consensus 963 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~ 1014 (1086)
+...+ .+| .++|.+++ |+ ++|..|+++ +..|+||++.+++.......
T Consensus 667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEEe-cCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 77663 344 47787777 76 455555544 77899999999988766531
Q ss_pred ccCCCCccCcccceEE---E------ECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 1015 YLRPTTSCLHVYPHAI---A------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 1015 ~~~~~~~~~~~~~~~~---~------~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
......++ . |++ ++..|++++.||+|++|+++.-+.
T Consensus 742 --------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 742 --------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp --------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred --------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 11222233 4 667 688999999999999999977664
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-48 Score=486.20 Aligned_cols=559 Identities=14% Similarity=0.175 Sum_probs=430.1
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
...++|.+|++.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 35678899999999999999998 589999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 477 (1086)
+|+|++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987655 6778999999999999999 8999999999999999987 66788899
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEec--CCCEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 554 (1086)
|...|.+++|+|. ++..|++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999652 56799999999999999999888777766555 7899999999 9999999876 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 632 (1086)
|..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence 999999999998887 899999999999999999999999999999999999887664 4689999999987 455
Q ss_pred EEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc-------
Q 001396 633 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE------- 705 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~------- 705 (1086)
++ .++.+.+|++...... +.+ +|+++.+++++.+....
T Consensus 289 ~~-~~~~~~~~~~~~~~~~------------~~~----------------------~~~g~~~~~~~~~~~~~~~~~~~~ 333 (814)
T 3mkq_A 289 SG-FDNGFTVLSLGNDEPT------------LSL----------------------DPVGKLVWSGGKNAAASDIFTAVI 333 (814)
T ss_dssp EE-ETTEEEEEECSCCSCC------------EEE----------------------CSSSEEEEECCTTSCTTCEEEEEC
T ss_pred EE-eCCCEEEEEcCCCCce------------eEE----------------------CCCCCEEEECcccccceeeeeeec
Confidence 55 4667889987755332 222 24555555544433211
Q ss_pred --eeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCC
Q 001396 706 --VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 783 (1086)
Q Consensus 706 --vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 783 (1086)
.|+.............. ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~--------------------- 389 (814)
T 3mkq_A 334 RGNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN--------------------- 389 (814)
T ss_dssp CSCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE---------------------
T ss_pred ccccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc---------------------
Confidence 12222111111111111 22456788999999999888887 89999998542110
Q ss_pred ceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCC---CEEEEEeCC
Q 001396 784 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDD 859 (1086)
Q Consensus 784 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~d 859 (1086)
.+...+.+++|+||++++++++ +|.|++|+. +.+|...+.+++|+| ++ .+|++++.|
T Consensus 390 ----------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d 450 (814)
T 3mkq_A 390 ----------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSD 450 (814)
T ss_dssp ----------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEET
T ss_pred ----------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecC
Confidence 1345678999999999999997 699999963 344777889999999 77 578888999
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEE------eCCCcEEEEECCC---------------Cceeeee
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCR 918 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~------s~dg~i~iwd~~~---------------~~~~~~~ 918 (1086)
+.|++||+.+++.+..+.+|.. .++|+|||++|+++ +.++.+.+|--.. +......
T Consensus 451 ~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (814)
T 3mkq_A 451 GFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFD 527 (814)
T ss_dssp TEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEE
T ss_pred CEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhhee
Confidence 9999999999999999998875 89999999999999 6666555553210 0000011
Q ss_pred eeeccCCCccCCCCceEEEEecCCCEEEEEe-CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 919 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 919 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
.+... ...+.+..|. +..++... .+.+..+. .++... .......+..+.|.+++..++....++.+.
T Consensus 528 ~~~~~------~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 595 (814)
T 3mkq_A 528 VLYEL------SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVY 595 (814)
T ss_dssp EEEEE------CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEE
T ss_pred eeeEe------ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEE
Confidence 11111 1235566664 34444433 34444432 222111 112345666777889999999999999999
Q ss_pred EEEcCCCc
Q 001396 998 IHEASNLE 1005 (1086)
Q Consensus 998 vWd~~~~~ 1005 (1086)
+|+++...
T Consensus 596 ~~~l~~~~ 603 (814)
T 3mkq_A 596 GYEISLEV 603 (814)
T ss_dssp EEECCHHH
T ss_pred EEEECcHH
Confidence 99987543
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-46 Score=472.84 Aligned_cols=570 Identities=14% Similarity=0.153 Sum_probs=427.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|||||++||+++.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++++.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987655 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
+.+++.+..+.+|.+.|++++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999965 6779999999999999999987 55667888999999999999 8889999886
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec--CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 7789999999888887777654 47899999999 99999999999999999999999999888664 46899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc-eeccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA 700 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~ 700 (1086)
++|+|+++++++++.||.|++||..+++....+..+...+.+++++ |++..+ ++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~ 291 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF 291 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999997 455533 56666
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecccee-EEeeccCCccccCcccccccCCceecC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
++.+.+|++.. ....+.++|+|+.+++++.+... .++... ....|+.
T Consensus 292 ~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 339 (814)
T 3mkq_A 292 DNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEEV 339 (814)
T ss_dssp TTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCCC
T ss_pred CCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------ccccccc
Confidence 77788887542 12346788999988877665321 111000 0011222
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 780 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 780 ~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
..+............+...+.+++|+|+|++++++++|.+.+|++....... .+.+.+++|+| +++++|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~ 413 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET 413 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence 2222111111111135667899999999999999999999999987665433 34677999999 89999999999
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCC---CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEE
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 936 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 936 (1086)
|.|++|+ .+.+|...+.+++|+||| ++|++++.|+.|++||+.+++ .+.....+. ..+
T Consensus 414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v 474 (814)
T 3mkq_A 414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV 474 (814)
T ss_dssp CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence 9999995 345688889999999998 689999999999999999865 333343332 289
Q ss_pred EEecCCCEEEEE------eCCeEEEEEcCCccceecccc-------CCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 937 QFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 937 ~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~~-------~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
+|||||++|+++ .++.+.+|....+.....+.. +.......+. +- +..+.++..++.+.+|....
T Consensus 475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~s~~w~~~~~i~~t~~ 552 (814)
T 3mkq_A 475 IWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY-EL-SESITSGKWVGDVFIFTTAT 552 (814)
T ss_dssp EECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE-EE-CSCCSEEEEETTEEEEECTT
T ss_pred EEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee-Ee-ccEEEeeEEeCCEEEEEcCC
Confidence 999999999997 666777665443221111000 0000111110 00 11122333344455554433
Q ss_pred CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1004 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
+.... +..............++ .+.|.+ ++..++....++.+..|.+.
T Consensus 553 ~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~d~~~~~~~~~l~ 600 (814)
T 3mkq_A 553 NRLNY-FVGGKTYNLAHYTKEMY--LLGYLA-RDNKVYLADREVHVYGYEIS 600 (814)
T ss_dssp SEEEE-EETTEEEEEEECSSCCE--EEEEEG-GGTEEEEECTTCCEEEEECC
T ss_pred CeEEE-EeCCeeEEEEECCccEE--EEEEEe-cCCEEEEEcCCCCEEEEEEC
Confidence 32211 11000000000012233 344556 57889999999999999975
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-44 Score=406.00 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.7
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
..|.+|.++|++++|+|+++ +|++|+.||+|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 34789999999999999998 599999999999999999987765 7799999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
|++||+|+.|++|+|||+.++++++ .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++.++.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999887665 5779999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC--------------------CCEEEEE
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 541 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------~~~l~~~ 541 (1086)
|.+++++ +++.+|++++.|++|++||+.+......+..|...|.+++|+|+ |.+++++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999985 47789999999999999999999999999999999999999996 6789998
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||+.++.++..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|. ..|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence 86 7789999999999999999988 899999999999999999999999999999999999988764 46999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEC
Q 001396 622 ICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
++|+|++.+|++|+.|++|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=362.47 Aligned_cols=294 Identities=15% Similarity=0.237 Sum_probs=266.1
Q ss_pred ceeeeeccCCCCceEeeecCC----CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spd----g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
.+.+.+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++..... .+.+|...|.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~ 84 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVV 84 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEE
Confidence 445667899999999999985 44 6999999999999999877543221 1779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+++++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999987655 5678889999999999999 899999999999999999999999
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
+..|...|.+++|++ ++.+|++++.||.|++||+++++....+..+...|.+++|+|++++|++++. ++.|++|
T Consensus 160 ~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 999999999999954 7789999999999999999999999999999999999999999999999986 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 634 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 634 (1086)
|+++++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+. ..|.+++|+|++++|+++
T Consensus 234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence 999999999999888 899999999999999999999999999999999999987664 469999999999999999
Q ss_pred ECCCcEEEEECC
Q 001396 635 ANENRIKILETP 646 (1086)
Q Consensus 635 ~~dg~i~iw~~~ 646 (1086)
+.|+.|++||..
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.3e-40 Score=366.08 Aligned_cols=299 Identities=17% Similarity=0.240 Sum_probs=269.1
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
+....++|.+|.+.|++++|+||++ +||+|+.||+|+|||..+++.... +..|...|.++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~ 112 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMAC 112 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEE
Confidence 3466788999999999999999998 599999999999999999887654 55688999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCc---cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+|+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+++++++.
T Consensus 113 ~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp EECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEE
Confidence 9999999999999999999999875421 223346778999999999999999 79999999999999999999999
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.+|...|.++++++++++.+|++|+.||+|++||+++++....+..|...|.+++|+|+++++++++. ++.|++
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~l 266 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRL 266 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEE
Confidence 9999999999999998878889999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
||+++++.+..+..+. +...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++
T Consensus 267 wd~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 267 YDLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp EETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEE
T ss_pred EECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEE
Confidence 9999988877766433 23578999999999999999999999999999999988887664 46999999999999999
Q ss_pred EECCCcEEEEE
Q 001396 634 IANENRIKILE 644 (1086)
Q Consensus 634 ~~~dg~i~iw~ 644 (1086)
++.|++|++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.6e-40 Score=365.02 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=266.6
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456788999999999999999998 599999999999999999987765 66799999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCc-cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+|+|+|++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987642 233346779999999999999875 889999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+|.+.|.+++|++ ++.++++|+.||+|++||++++.....+..|...|.+++|+|+++++++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6789999999999999999999999999999999999999999999999986 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+++++.+..+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence 99998877765322 23579999999999999999999999999999999999888664 4699999999999999999
Q ss_pred CCCcEEEEE
Q 001396 636 NENRIKILE 644 (1086)
Q Consensus 636 ~dg~i~iw~ 644 (1086)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-39 Score=354.69 Aligned_cols=293 Identities=18% Similarity=0.310 Sum_probs=258.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
...++|.+|.+.|++++|||+|+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 599999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 477 (1086)
+|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999988 45577899
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-CCCCceEEEEEec--CCCEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 554 (1086)
|...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999764 45799999999999999998877766554 4557888999987 7789999986 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 632 (1086)
|+++++++..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999987653 4588999999875 577
Q ss_pred EEECCCcEEEEECCC
Q 001396 633 VIANENRIKILETPE 647 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~ 647 (1086)
+|+.|| +.+|++..
T Consensus 289 sg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEETTE-EEEEECC-
T ss_pred EecCCc-eEEEEecc
Confidence 776654 67777654
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-39 Score=353.61 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=260.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+..+|.+|.+.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 4567899999999999999977447999999999999998754322111 11237799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|||++|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987655 6789999999999999999 89999999999999975 6778889999
Q ss_pred CcceEEEeecccC----CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 479 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 479 ~~~v~~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
...|.++++.+.. ++..+++++.|+.|++||+...+....+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999999888899999999999999999999999986 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC------CCCCCceEEEecCC
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 628 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 628 (1086)
|+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999999888764 589999999999998888765 59999999988877765331 13457799999999
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 001396 629 TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~ 648 (1086)
++|++|+.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.6e-40 Score=369.25 Aligned_cols=306 Identities=17% Similarity=0.254 Sum_probs=266.8
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..+.++|.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 4577889999999999999999985 99999999999999999987765 668999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976431 1223357799999999999998654 69999999999999999999988
Q ss_pred Ee-----ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 474 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 474 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+ .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 87 679999999999643 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceeEEEEeCCCCeeeeEEecccc----cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC--CCCCCCCce
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 621 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 621 (1086)
|+.|++||+++++.+..+..+.. +...|.+++|+|+++++++|+.||.|++||+.+++....+.. .++...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 77899999999999888876541 123489999999999999999999999999999998887732 234557999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
++|+|+|++|++|+.|++|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999988653
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-38 Score=350.21 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=263.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|+||+++||+|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 78999999999999999999999999999999999887554 5778999999999999999 899999999999999
Q ss_pred CCCCc----eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 466 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 466 ~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+.++. ....+.+|.+.|.++.|.+. + .+++++.|++|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 98763 45678899999999999653 3 59999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||++++..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 7789999999999999999888 8999999999999999999999999999999998888775554456899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++|+|+|++|++|+.|+.|++||..++..+..+.+|...|.+++|+ |++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999996 789999999999
Q ss_pred Cccceee
Q 001396 702 NKSEVEK 708 (1086)
Q Consensus 702 ~~i~vw~ 708 (1086)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.4e-39 Score=364.33 Aligned_cols=286 Identities=18% Similarity=0.287 Sum_probs=267.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|..+|++++|+|++.+||+|+.||+|+|||+.+++..+ .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66899999999999999999999999999999999987665 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++++..+.+|...|.+++|++ ++.+|++++.|++|++||++++.....+..|...+.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC--------------------CCEEEEEECCCcEEEEEcCCCe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6789999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeec
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 685 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 685 (1086)
++..+..|. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 999988664 468999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCcccceeccccCccceeee
Q 001396 686 EDPKEDVKPEISVEAENKSEVEKP 709 (1086)
Q Consensus 686 ~~~s~d~~~l~s~~~d~~i~vw~~ 709 (1086)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 67889999999999999985
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=351.91 Aligned_cols=307 Identities=15% Similarity=0.228 Sum_probs=251.2
Q ss_pred cceeeeeccCCC-CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 318 KTVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 318 ~~~~~~l~~h~~-~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
..++++|.+|.+ .|++++|||||+ +||+|+.|++|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 357788999988 999999999998 599999999999999988764422 11246899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeE
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTY 473 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~---~~~ 473 (1086)
+|+|+|++||+|+.|++|+|||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23346889999999999999999 89999999999999998764 456
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
.+.+|...|.+++|+| ++.+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 7889999999999965 667999999999999999987653 4578889999999999999999999986 7789
Q ss_pred EEEeCCCC---------------eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe----eEE---E
Q 001396 552 VEWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LLT---T 609 (1086)
Q Consensus 552 ~iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~----~~~---~ 609 (1086)
++||.... +++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+. ... .
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 296 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence 99996322 223344442 24789999999999999999999999999987642 111 1
Q ss_pred EcCCCCCCCCceEEEecCC-CEEEEEECCCcEEEEECCCCCeee
Q 001396 610 IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
....++...|.+++|+|++ .+|++++.||+|++|+..+.+...
T Consensus 297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1122345679999999987 599999999999999999876543
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=346.54 Aligned_cols=288 Identities=16% Similarity=0.246 Sum_probs=264.0
Q ss_pred ecCCCccEEEEEECCC----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6689999999999985 67999999999999999987653 22335789999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
++||+.+++.+..+..|...+.+++|+| ++.+|++++.||.|++|+++++.....+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999954 77899999999999999999999998898899999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++....+..+. ..|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEE
Confidence 86 6789999999999999999887 899999999999999999999999999999999998887664 46899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999996 788899999999
Q ss_pred Cccceeee
Q 001396 702 NKSEVEKP 709 (1086)
Q Consensus 702 ~~i~vw~~ 709 (1086)
+.|++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 99999995
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-37 Score=340.37 Aligned_cols=295 Identities=18% Similarity=0.310 Sum_probs=261.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
....++.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45678899999999999999998 599999999999999999887654 6789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
..+|.+++|++ ++.+|++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999955 67899999999999999999988776654 45567999999999999999886 7789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE--
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 635 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 635 (1086)
+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence 999999998877333334444445778899999999999999999999999988664 4689999999999999997
Q ss_pred CCCcEEEEECC
Q 001396 636 NENRIKILETP 646 (1086)
Q Consensus 636 ~dg~i~iw~~~ 646 (1086)
.|++|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.4e-39 Score=357.54 Aligned_cols=319 Identities=15% Similarity=0.210 Sum_probs=230.5
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
+.+..+.....|++....+ ..|...|.+++|+|||++|++++.+. +++||- .++
T Consensus 20 ~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v~ 73 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SIW 73 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EEE
T ss_pred EecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eEE
Confidence 4444456678888653222 24888999999999999999998743 244431 233
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEE----EEcCCCCCeEEEEEcCCCCC
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~~ 851 (1086)
+|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+| +++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 152 (357)
T 4g56_B 74 VFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGT 152 (357)
T ss_dssp EESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSS
T ss_pred EEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCC
Confidence 44444433222221212247888999999999988877779999999999887643 3457999999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++.... + ....+.
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~-~~~~~~--- 226 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--I-DFCASD--- 226 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--C-CCTTCC---
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--e-eecccc---
Confidence 999999999999999999999999999999999999999885 789999999999999988653221 1 111222
Q ss_pred CCceEEEEecCC-CEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCC-CEEEEEECCCcEEEEEcCCCcee
Q 001396 931 PSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 931 ~~v~~~~~s~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++++.||+|+|||+.+++++
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 368999999985 56777 5789999999999998876 56899999999999987 57999999999999999999877
Q ss_pred eeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 1008 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
..+. |.. .+.+++|+|.|+.+|++++.||+|++|+++..+.
T Consensus 306 ~~~~---------H~~--~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 306 RDLS---------HRD--FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EECC---------CSS--CEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EECC---------CCC--CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 5432 233 3458999997789999999999999999976553
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-38 Score=354.59 Aligned_cols=294 Identities=13% Similarity=0.148 Sum_probs=239.5
Q ss_pred ccCCCCceEeeecCCCceEEEEEec------cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..|...|++++|||||+ +||+|+. |+.|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 57999999999999998 5899987 67889998887765432111 14468899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCcccc-ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|++|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 577899999999998875432 224558999999999999999 899999999999999999999999999
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iw 554 (1086)
|...|++++|++..+ .++++++.||+|++||+++++....+ ..+...+.+++|+|++ .++++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999976533 47899999999999999988776544 3456679999999985 56777765 6779999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 632 (1086)
|+++++.+..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+. +...|.+++|+| ++.+|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEE
Confidence 999999999999888 899999999987 578899999999999999998887653 345699999998 899999
Q ss_pred EEECCCcEEEEECCCC
Q 001396 633 VIANENRIKILETPES 648 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~ 648 (1086)
+++.||+|++|++...
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999764
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=347.23 Aligned_cols=299 Identities=14% Similarity=0.118 Sum_probs=239.7
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccce-eeeeeeecCCCccEEEEEECCCCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
..|...|.+++|||||+ +|++++ |+++++||... ..|+...... .........|...|.+++|+||+
T Consensus 27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 34666799999999998 577777 78889997321 1111110000 00000122356789999999985
Q ss_pred EEEEEeCCCEEEEEEecCCCccccc-eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
+|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 6889999999999999998865432 23558999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--CCCCceEEEEEecC-CCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
++++|++.. ..+|++++.|++|++||+++++....+. .+...+.+++|+|+ ++++++++. ++.|++||++++
T Consensus 173 ~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred EEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence 999997643 2588999999999999999988877664 34557899999995 567777775 778999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE 637 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 637 (1086)
+++..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+.++++.. +..| ...|.+++|+|+++ +|++++.|
T Consensus 248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETT
T ss_pred cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCC
Confidence 9999999988 899999999998 578899999999999999988654 4444 45799999999886 67789999
Q ss_pred CcEEEEECCCC
Q 001396 638 NRIKILETPES 648 (1086)
Q Consensus 638 g~i~iw~~~~~ 648 (1086)
++|++|++.+.
T Consensus 322 ~~v~~w~v~~~ 332 (344)
T 4gqb_B 322 HQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEECCC-
T ss_pred CeEEEEECCCC
Confidence 99999999865
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5e-37 Score=342.05 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|...|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77999999999999999999999999999999998876544 5678899999999999999 899999999999999
Q ss_pred CCCC------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec--CCCE
Q 001396 466 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 537 (1086)
Q Consensus 466 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~ 537 (1086)
+... .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...+.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34577888999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 7789999999999999998887 899999999999999999999999999999998888776555445
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+.+++|+|++++|++++.|+.|++||+.++..+..+.+|...|.+++|+ |+++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999996 78999999
Q ss_pred ccccCccceee
Q 001396 698 VEAENKSEVEK 708 (1086)
Q Consensus 698 ~~~d~~i~vw~ 708 (1086)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-37 Score=353.74 Aligned_cols=327 Identities=15% Similarity=0.218 Sum_probs=269.3
Q ss_pred cCCCccEEEEEECCCCC-EEEEEeCCCEEEEEEe----cCCCccc---cceEecc----------ccccEeEEEecCCCC
Q 001396 387 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCK 448 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~~---~~~~~~~----------h~~~v~~v~~s~d~~ 448 (1086)
..|...|.+++|+|+|+ +||+|+.||.|++||+ .+++.+. ....+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 8876200 1112222 688999999999999
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc---
Q 001396 449 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--- 525 (1086)
Q Consensus 449 ~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--- 525 (1086)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+++....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78899999999999999999955 6779999999999999999999888888777766
Q ss_pred ------------eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC
Q 001396 526 ------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 593 (1086)
Q Consensus 526 ------------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 593 (1086)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|. ..|.+++|+|+++++++++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETT
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCC
Confidence 89999999866 555554 6789999999998888887776 788888888888888888888
Q ss_pred CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 594 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 594 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
|.|++||+.+++.+..+.
T Consensus 269 ~~i~i~d~~~~~~~~~~~-------------------------------------------------------------- 286 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFY-------------------------------------------------------------- 286 (425)
T ss_dssp SCEEEECSSSBSCSEEEC--------------------------------------------------------------
T ss_pred CEEEEEECCCCccceEec--------------------------------------------------------------
Confidence 888888776541111000
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 832 (1086)
+|...|.+++|+|++ ++++++ ++.|++||+.+++.+..
T Consensus 287 ----------------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 287 ----------------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp ----------------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred ----------------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence 144456677777777 666665 68888888888888888
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------eEEEeccccC--CeEEEEEeC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSD 890 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~v~~l~~sp 890 (1086)
+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|
T Consensus 326 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp EECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred cccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 888999999999999 89999999999999999999988 8899999977 999999999
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 001396 891 ALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 891 dg~~l~s~s~dg~i~iwd~~ 910 (1086)
++++|++++.||.|++|++.
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEEEEEESSSCCEEEECC
T ss_pred CCceEEEEecCceEEEEeec
Confidence 99999999999999999986
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=356.77 Aligned_cols=341 Identities=13% Similarity=0.187 Sum_probs=282.9
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEec----CCCceeeeeeeeeeeccccceeee-eeeecCCCccEEEEEEC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~s 399 (1086)
..|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+. .++. .....+|...|.+++|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR---HPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE---CCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc---ccccccccccCCCCceEEEEEc
Confidence 3566899999999999834899999999999999 88873211000 00000 0000 00122378899999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
|++++||+++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..+.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 191 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKE 191 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence 9999999999999999999 4444443 6778999999999999999 89999999999999999999999998888
Q ss_pred cc---------------eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 480 AP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 480 ~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.. +.+++|++. ..+++++.+|.|++||+........+..+...+.+++|+|+++++++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 267 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD- 267 (425)
T ss_dssp --------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-
T ss_pred cCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-
Confidence 77 888998753 36999999999999999999998899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
++.|++||+.+++.+..+.+|. ..|.+++|+|++ ++++++.||.|++||+.+++.+..+..+. ..+.+++|
T Consensus 268 ---d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~ 338 (425)
T 1r5m_A 268 ---DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRI 338 (425)
T ss_dssp ---TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEE
T ss_pred ---CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEE
Confidence 6779999999999999998877 899999999999 99999999999999999999998888654 36899999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCC--------------------eeeecccccc--ceeeeEEccCCCceeccccCCee
Q 001396 625 NKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------- 403 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN--------------- 403 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC---------------
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc---------------
Confidence 9999999999999999999999877 7788888866 88888885
Q ss_pred eecCCCCCCcccceeccccCccceeeee
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+++++++++.|+.+++|++.
T Consensus 404 -------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 -------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------TTSSEEEEEESSSCCEEEECC
T ss_pred -------CCCceEEEEecCceEEEEeec
Confidence 788899999999999999974
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.1e-38 Score=345.66 Aligned_cols=296 Identities=13% Similarity=0.164 Sum_probs=226.0
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
+...|.+++|+|||+.+++++ ++++++|+... .+|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566799999999999777665 77888887321 11111100000000000002567899999999
Q ss_pred CCCEEEEEeCCeEEEEEccCceEEE----EEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCC
Q 001396 807 NDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 882 (1086)
Q Consensus 807 dg~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 882 (1086)
|+.+++.+.||+|+|||+.+++.+. .+.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 9765544448999999999876543 3458999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC-CCEEEE-EeCCeEEEEEcC
Q 001396 883 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 959 (1086)
Q Consensus 883 v~~l~~spdg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~ 959 (1086)
|++++|+|++. +|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +.+|++ +.|+.|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 99999999984 789999999999999998653321 111 1111 25889999996 456777 578999999999
Q ss_pred CccceeccccCCccCEEEEEEeCCC-CEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCC
Q 001396 960 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1038 (1086)
Q Consensus 960 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1038 (1086)
+++++.. +.+|...|++++|+||| ++|++|+.||+|+|||+.++++.. +. .|.. .+.+++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~--~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRD--FVRDATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSS--CEEEEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCC--CEEEEEEeCCCCe
Confidence 9999887 56899999999999998 579999999999999999987653 22 1333 3458999996556
Q ss_pred EEEEEeCCCcEEEEccCCC
Q 001396 1039 QFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1039 ~l~~~~~dg~v~vw~~~~~ 1057 (1086)
+|++++.||+|++|+++..
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999653
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-37 Score=339.02 Aligned_cols=297 Identities=17% Similarity=0.201 Sum_probs=235.1
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeee-cC-CCccEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNR 395 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~ 395 (1086)
.+++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++...... .+ .+ |...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEE
Confidence 3567889999999999999998 5999999999999999876422110 13 34 9999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCC----ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC-C-
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-G- 469 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~-~- 469 (1086)
++|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. +
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999996432 1223346789999999999999999 899999999999999943 2
Q ss_pred --ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC--ceeEEecCCCCceEEEEEecC--CCEEEEEee
Q 001396 470 --SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGT 543 (1086)
Q Consensus 470 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~ 543 (1086)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... +....+..|...|.+++|+|+ +.+|++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 46778899999999999965 6679999999999999998766 466788899999999999998 778999886
Q ss_pred CCCCceeEEEEeCCCC--------eeeeEEec-ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee--EEEEcC
Q 001396 544 SKEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA 612 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~ 612 (1086)
++.|++||+.++ .....+.+ |. ..|.+++|++++ +|++++.||.|++||..+++. .....
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~- 290 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA- 290 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-
Confidence 778999998765 23334433 44 899999999765 899999999999999988743 33321
Q ss_pred CCCCC-CCceEEEec--CCCEEEEEECCCcEEEEECCC
Q 001396 613 GGGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 613 ~~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
..+.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 291 ~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 22233 689999999 789999999999999999864
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.8e-37 Score=342.20 Aligned_cols=302 Identities=17% Similarity=0.276 Sum_probs=245.9
Q ss_pred cceeeeeccCCCCceEeee-----cC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 318 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~-----sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
..+..+|.+|++.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCC
Confidence 3567789999999999999 77 887 6999999999999999865432100 001123789999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+. +..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GEC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCc
Confidence 99999999999999999999999999999987655 6789999999999999999 89999999999999987 444
Q ss_pred eEEee---cCCcceEEEeecccCC--------ccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 472 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 472 ~~~~~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
..... +|...|.+++|++... +.+|++++.||.|++|| ........+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEE
Confidence 44443 7899999999976532 26899999999999999 445566678889999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEE--EEcC-----
Q 001396 541 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDA----- 612 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~----- 612 (1086)
++. ++.|++||+.. ......+. +. ..|.+++|+|++.++++ +.|+.|++||+.+++... .+..
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 77899999954 44444443 23 57999999999887654 557889999998876543 3321
Q ss_pred ----CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 613 ----GGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 613 ----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 133456889999999999999999999999997653
No 34
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7e-37 Score=333.42 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=242.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|+|||++||+|+.||+|++||+.+++.++ .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999987655 6778999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
+.+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999965 667999999999999999988744 457888999999999999 6789999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec--CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|. ..|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 7789999998887766665433 36789999986 67899999999999999999999999998764 46899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEcc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 668 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p 668 (1086)
++|+|++++|++++.||+|++||..+++....+..+...+.+++++|
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999999999999999999999999999999999999999874
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.5e-37 Score=346.06 Aligned_cols=303 Identities=15% Similarity=0.232 Sum_probs=248.0
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
+|.+.|++++|||||++ ||+|+ +++++||++.+|+.+.......-. ..............+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECCCCCEE
Confidence 69999999999999984 88876 689999999999877542110000 0000000011112344569999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
|+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886554 6789999999999999999 89999999999999999999888876 66779999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-------cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
++++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98653 6789999999999999999988776655 467789999999999999999986 77899999876
Q ss_pred C------------eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 559 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 559 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
. .+...+.+|. ..|.+++|+|++.+|++|+.|+.|++||+.+++.+..+..|. ..|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence 3 3445666776 889999999999999999999999999999999999888764 4689999886
Q ss_pred ------CCCEEEEEECCCcEEEEECCC
Q 001396 627 ------NGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 627 ------~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
++++|++++.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-37 Score=351.57 Aligned_cols=290 Identities=15% Similarity=0.166 Sum_probs=257.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|+|++++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.+++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 78999999999999999999999999999999999987554 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-----cCCCCceEEEEEec
Q 001396 466 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 533 (1086)
Q Consensus 466 ~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 533 (1086)
+.+.. ....+.+|.+.|.++.|.+. ++..|++++.|++|++||+.++.....+ ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecC-CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87542 34667899999999999765 3457999999999999999999887766 56778899999987
Q ss_pred -CCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 534 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 534 -d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++++++++. ++.|++||++ .++.+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8899999986 7789999998 557788888887 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec----cccccceeeeEEccCCCceeccccCCee
Q 001396 612 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 612 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++.+..+ .+|...|.+++|+
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--------------- 353 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--------------- 353 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence 5422 234789999999999999999999999999988877666 6788899999996
Q ss_pred eecCCCCCCcccceeccccCccceeeee
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+|+++++++.|++|++|++.
T Consensus 354 -------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 -------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------SSSSEEEEECTTSCEEEEECC
T ss_pred -------CCCCEEEEeeCCCCEEEEecC
Confidence 789999999999999999975
No 37
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.1e-35 Score=380.27 Aligned_cols=523 Identities=13% Similarity=0.060 Sum_probs=378.3
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
+...+.+.+|||+ + ||.++. +.|.+|++.+|+... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4557899999964 4 555554 789999998887543 667999999999999999999
Q ss_pred EEeCC------CEEEEEEecCCCccccceEeccccccE-------eEEEecCCCCcEEEEEEeCC------CcEEEEeCC
Q 001396 407 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 467 (1086)
Q Consensus 407 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~v~~s~d~~~l~l~s~~~d------~~i~iwd~~ 467 (1086)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988762 2 467888888 9999999998 67777754 468888887
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEc------------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 535 (1086)
+++.. .+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77653 333332 33556754 5 7887753 345677754444555556788889999999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
..++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+. ++.|++||+.... +..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence 44444432 34455665432 33344444443 356679999999988874 8999999995544 33444321
Q ss_pred ---------CCCCCceEEEe-cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeee
Q 001396 615 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684 (1086)
Q Consensus 615 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 684 (1086)
+...+..++|+ |||+++++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7889999877553221 11
Q ss_pred cCCCCCCcccceeccccCccceeeeeecCCccccccccCCccccc-ceEEEEEecCCceEEEeeccceeE-EeeccCCcc
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 762 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-vw~~~~~~~ 762 (1086)
.+.. .+..++|+ ||+.++.++.++.+. +|+....
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-- 369 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-- 369 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--
Confidence 0223 56778889 998888888776666 6665432
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeE
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 841 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~ 841 (1086)
. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 370 --------------------~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 370 --------------------K-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp --------------------C-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred --------------------C-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 1 111 11 2667899999999999999988 58999999999998888878989999
Q ss_pred EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 842 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 842 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
+++||| ||++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887644 99999999887 677888988899999999999999999988888887543
Q ss_pred Cceeee-----eeeec-----------------------cCCC-------ccCCCCceEEEEecCCCEEEE---------
Q 001396 912 WGIQTC-----RSLQT-----------------------PDGV-------MTLAPSETHIQFHKDQTRFLL--------- 947 (1086)
Q Consensus 912 ~~~~~~-----~~~~~-----------------------~~~~-------~~~~~~v~~~~~s~dg~~l~~--------- 947 (1086)
...... ..+.. ..+. ....+.+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 321000 00000 0000 001135788999999987875
Q ss_pred ---E--eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 948 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 948 ---~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
+ ....+.+||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234688999988875332 2 568899999999999999866 89999998887
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.5e-36 Score=335.73 Aligned_cols=289 Identities=14% Similarity=0.181 Sum_probs=247.9
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
|.++|.+++|||||+. ++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 4568999999999984 77777767666665544332221 447999999999999999999
Q ss_pred EEeCCCEEEEEEecCCCccccceEec--cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeecCCcce
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 482 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 482 (1086)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655544444 7999999999999999 89999999999999999887 667788899999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6789999999999999999999988899999999999999999999999986 778999999999988
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEE
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 642 (1086)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +..+ ...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 689999999999999999999999999999887653 3333 456899999999999999999999999
Q ss_pred EECCCCCee
Q 001396 643 LETPESNSV 651 (1086)
Q Consensus 643 w~~~~~~~~ 651 (1086)
|++.+++.+
T Consensus 292 ~~~~~~~~~ 300 (337)
T 1gxr_A 292 WRTPYGASI 300 (337)
T ss_dssp EETTTCCEE
T ss_pred EECCCCeEE
Confidence 999877544
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=358.14 Aligned_cols=353 Identities=13% Similarity=0.185 Sum_probs=274.8
Q ss_pred CCCceEeeecCCCceEEEEE----------eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~g----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...|.+++|||+|+.+||+| +.|+.|+|||+.+++.... + ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34799999999998679999 8899999999998863211 0 0235889999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCc-cccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc-----
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS----- 470 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~----- 470 (1086)
|+|++++||+|+.||.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1233367799999999999999 66 79999999999999999887
Q ss_pred -eeE---EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC------CCceEEEEEecCC-CEEE
Q 001396 471 -RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLF 539 (1086)
Q Consensus 471 -~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~d~-~~l~ 539 (1086)
... .+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 34679999999999764 2579999999999999999999888888776 6789999999997 5788
Q ss_pred EEeeCCCCceeEEEEeCCCC-eeeeEEe-cccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCC
Q 001396 540 SCGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 616 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 616 (1086)
+++.++ .++.|++||++++ ..+..+. +|. ..|.+++|+| ++++|++++.||.|++||+.+++.+..+..+.
T Consensus 232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-- 305 (416)
T 2pm9_A 232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG-- 305 (416)
T ss_dssp EEECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--
T ss_pred EEECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--
Confidence 877522 1238999999986 6667777 666 8999999999 89999999999999999999999999988664
Q ss_pred CCCceEEEecCC-CEEEEEECCCcEEEEECCCCCeeeeccc--cccceeeeEEccCCCcee---------------cccc
Q 001396 617 PENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIA 678 (1086)
Q Consensus 617 ~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~---------------~~~~ 678 (1086)
..|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.....+ ....
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP 385 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence 468999999998 8999999999999999987754332211 000000011111100000 0111
Q ss_pred CCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 679 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 679 ~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
...++| +|+|+++++++.|+.|++|++.
T Consensus 386 ~~~~~~----s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 386 SPAAHW----AFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp SCCCEE----ETTTEEECBCTTSSCBCCBCCC
T ss_pred ccceEE----eeCCeEEEEeCCCCeEEEEEec
Confidence 113344 7999999999999999999976
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-36 Score=336.07 Aligned_cols=303 Identities=18% Similarity=0.260 Sum_probs=260.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4567899999999999999985337999999999999999887644321 12237899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~ 477 (1086)
+|||++|++++.|+.|++|+...+.... ....+...+..+.++++++ .+++++.|+.+++||+...... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998876444 4567888899999999999 7999999999999998766543 44577
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
|...+..++|++.....++++++.|+.|++||+++.+....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 7789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-------CCCCCCCceEEEecCCCE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-------GGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~ 630 (1086)
+++.+..+..+ ..+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~----~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGG----DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECS----SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCC----ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999888764 4899999999864 56677799999999999888777643 234557899999999999
Q ss_pred EEEEECCCcEEEEECCCCC
Q 001396 631 LAVIANENRIKILETPESN 649 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~ 649 (1086)
|++|+.||.|++||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998774
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.6e-36 Score=328.62 Aligned_cols=297 Identities=21% Similarity=0.270 Sum_probs=252.7
Q ss_pred eecCCCccEEEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc--ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 385 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 388999999999999965 89999999999999999754321 23346789999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC------C
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 535 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d------~ 535 (1086)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...+.+++|+|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999955 67799999999999999996 4566778889999999999985 4
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 237 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-- 237 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence 47888876 7789999999999999999888 89999999999999999999999999999999999888765
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
..+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 358999999999999988765 5999998865444333211000
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccC
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
....+...+.+++|+|||++|++++.||.|++|++..
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999998653
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-35 Score=326.44 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=260.9
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999887554 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|+.+++++..+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 6789999999998887775433 46899999999999999999999999999999999998887654333334445
Q ss_pred e-cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc--cc
Q 001396 625 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 701 (1086)
Q Consensus 625 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d 701 (1086)
+ +++.++++++.||.|++||+.+++.+..+.+|...|.+++++ |++.++++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678899999999999999999999999999999999999996 6677788875 69
Q ss_pred Cccceeeee
Q 001396 702 NKSEVEKPL 710 (1086)
Q Consensus 702 ~~i~vw~~~ 710 (1086)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999854
No 43
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.1e-34 Score=366.85 Aligned_cols=529 Identities=10% Similarity=0.016 Sum_probs=374.3
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC------CCcEE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 462 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~ 462 (1086)
+...+.+.+||| +.||+++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456788999995 58888876 68999999887633 4678999999999999999 5665543 34799
Q ss_pred EEeCCCCceeEEeecCCcce-------EEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 463 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|.+|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99988876 67788898888 8899965 66677777754 3577788766554333222 23467
Q ss_pred EEecCCCEEEEEeeCCC--------CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 530 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
+|+| | +++++..+.+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777642211 12234455433223445556666 89999999998 56667788899999987
Q ss_pred CC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 602 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 602 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
.. +.....+..+. .+...+|+|||+.++.+. ++.|++|+.... .+..+..+...
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~-------------------- 286 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLE-------------------- 286 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCC--------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCccc--------------------
Confidence 53 44444554433 357789999999998874 789999998432 22222110000
Q ss_pred eeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEe-cCCceEEEeeccceeEEeeccC
Q 001396 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
... .| ..+...+.+++|+ |||+.++.++ ++.+.+|+...
T Consensus 287 ---------------------~~~-~~-----------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 287 ---------------------SPE-DR-----------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ---------------------BCC-SE-----------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ---------------------ccc-cc-----------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 000 00 0144567889999 9999888877 77888877543
Q ss_pred CccccCcccccccCCceecCCCCCceeeecCCCCCCCC-CeeEEEeecCCCEEEEEeC-CeEE-EEEccCceEEEEEcCC
Q 001396 760 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP 836 (1086)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l~~~~d-g~i~-iwd~~~~~~~~~~~~~ 836 (1086)
. . ... +. .+.. .+..++|+ ||+.++++++ +.+. +|++.+++... +..|
T Consensus 327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~ 377 (1045)
T 1k32_A 327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN 377 (1045)
T ss_dssp S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC
T ss_pred C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC
Confidence 2 1 111 11 2455 78899999 9999999885 6688 88998776544 4477
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC----------cEEE
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV 906 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg----------~i~i 906 (1086)
...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 78999999999 899999999999999999999998888878999999999999999999887654 8999
Q ss_pred EECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccc----------------------
Q 001396 907 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC---------------------- 963 (1086)
Q Consensus 907 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~---------------------- 963 (1086)
||+.+++. .....+.. .+..++|+|||++|+. +.++...+|+......
T Consensus 457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 99998541 12222222 4778999999999988 4445555554321111
Q ss_pred --------------------eeccccCCccCEEEEEEeCCCCEEEE-------------EECCCcEEEEEcCCCceeeee
Q 001396 964 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 964 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~s-------------~~~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
....+..|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 00112346688999999999987875 123457888999888754222
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
. .+.+++|+| ||+.|++++.+ .|++|++....
T Consensus 608 ~--------------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 N--------------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E--------------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c--------------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234688999 79999998876 89999996543
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-35 Score=336.21 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=248.9
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEecccc------------------ccEeEEEecCCCCc
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 449 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~v~~s~d~~~ 449 (1086)
+|...|.+++|||||++||+|+ ++.++||++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987654 333332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 450 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 450 l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66799999999999999999988776665 44578999
Q ss_pred EEec-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 530 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 530 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
+|+| +++++++++. ++.|++||+.++..+..+... ..|...|.+++|+|++++|++++.|+.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 678999999999888776311 123389999999999999999999999999999764
Q ss_pred e------------eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 605 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 605 ~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
. +...+..| ...|.+++|+|++.+|++++.|+.|++||..++..+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 3 33444444 446899999999999999999999999999999999999999999999999864332
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
.|++.++++++.|++|++|++..
T Consensus 367 ----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 367 ----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred ----------------CCCCCEEEEECCCCcEEECcccc
Confidence 57899999999999999999763
No 45
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=329.87 Aligned_cols=294 Identities=16% Similarity=0.202 Sum_probs=246.5
Q ss_pred ecCCCc-cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 386 VRDPGV-SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~-~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+.+|.. .|.+++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+|+ +|++|+.|++|++|
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW 88 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence 778887 999999999999999999999999999998764333323468999999999999999 89999999999999
Q ss_pred eCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCCEEE
Q 001396 465 DAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 465 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
|+.++ +++..+.+|...|.+++|++ ++.+|++++.|++|++||++.... ...+..|...|.+++|+|++++|+
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence 98877 45788999999999999965 678999999999999999987643 456778889999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-------------
Q 001396 540 SCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV------------- 604 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~------------- 604 (1086)
+++. ++.|++||..+++ ....+.+|. ..|.+++|+|++++|++++.|++|++|+....
T Consensus 167 s~s~----d~~i~~w~~~~~~~~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 167 SASY----DDTVKLYREEEDDWVCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp EEET----TSCEEEEEEETTEEEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred EEeC----CCcEEEEEecCCCEEEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 9986 6789999998875 346677777 89999999999999999999999999996321
Q ss_pred --eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe---------eeeccccccceeeeEEccCCCce
Q 001396 605 --QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 605 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
+++..+... +...|.+++|+|++..|++++.|+.|++|+...... .....+|...|.+++|+
T Consensus 240 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~------ 312 (345)
T 3fm0_A 240 SWKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN------ 312 (345)
T ss_dssp EEEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC------
T ss_pred ccceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe------
Confidence 233344331 335689999999999999999999999999875421 12345788999999997
Q ss_pred eccccCCeeeecCCCCCCc-ccceeccccCccceeeeeecC
Q 001396 674 GAGIANGSVSVNEDPKEDV-KPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~-~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
|++ .++++++.|++|++|+.....
T Consensus 313 ----------------p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 313 ----------------PKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp ----------------SSSTTEEEEEETTSCEEEEEECC--
T ss_pred ----------------CCCceEEEEcCCCCcEEEEEecCCC
Confidence 455 479999999999999986433
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-35 Score=322.86 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=232.3
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677888887 99999999987 8999999999999999875 4455553322455799999999999999999
Q ss_pred CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCc
Q 001396 636 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 715 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~ 715 (1086)
.|++|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975321000
Q ss_pred cccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCC
Q 001396 716 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 795 (1086)
Q Consensus 716 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 795 (1086)
. ... . ... + .+|
T Consensus 95 -------------~---------~~~-~-----------------------------------------~~~--~--~~h 106 (330)
T 2hes_X 95 -------------F---------EMD-L-----------------------------------------LAI--I--EGH 106 (330)
T ss_dssp -------------C---------CCE-E-----------------------------------------EEE--E--C--
T ss_pred -------------c---------cce-e-----------------------------------------EEE--E--cCC
Confidence 0 000 0 000 0 026
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEEccC----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 796 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
...|.+++|+|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 77788888888888888887 68888888832 356778899999999999999 8999999999999999999876
Q ss_pred --eeEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCce---eeeeeeeccCC-CccCCCCceEEEEecCC
Q 001396 871 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 871 --~~~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~~s~dg 942 (1086)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |. ..|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence 678899999999999999999 77999999999999999875321 11123333333 44 379999999877
Q ss_pred CEEEEEeCCeEEEEEcCCcc--ceeccccCCcc-CEEEEEEeC--CCCEEEEEECCCcEEEEEcCC
Q 001396 943 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 943 ~~l~~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
.++..+.|+.|++|+..+++ .......+|.. .|.+++|+| ++++|++|+.||+|++||+..
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 44444789999999998774 34344467876 999999999 789999999999999999875
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.3e-36 Score=345.16 Aligned_cols=350 Identities=12% Similarity=0.115 Sum_probs=284.8
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
+.+++++|+|+|++ |++|+.||.|++||+.+++.... +.+| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 34668999999996 89999999999999988765532 3344 455666899999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
+.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876544 5679999999999999999 89999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecC---CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
+ ++.+|++++.||.|++||+++++....+.. +...+.++++.+++...+ .
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~ 243 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------H 243 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------G
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------e
Confidence 5 678999999999999999999888887764 455777887776543210 1
Q ss_pred ecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCcEEEEE
Q 001396 566 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE 644 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~ 644 (1086)
..+ ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ +|++++.||.|++||
T Consensus 244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 112 267888999999999999999999999999999888777542 234689999999999 999999999999999
Q ss_pred CCCCCe-eeeccc-cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc-c-
Q 001396 645 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-L- 720 (1086)
Q Consensus 645 ~~~~~~-~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~- 720 (1086)
+.++.. +..+.. +...+.++.+ ++++++++++.|+.+++|++.......... .
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 998743 666665 5556666644 457789999999999999987532221110 0
Q ss_pred -ccCCcccccceEEEEEecCCc---eEEEeeccceeEEeecc
Q 001396 721 -LLPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 758 (1086)
Q Consensus 721 -~~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~vw~~~ 758 (1086)
......+...|.+++|+|+++ .+++++.+|.+.+|++.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 001134778899999999999 89999999999999864
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.8e-36 Score=343.45 Aligned_cols=347 Identities=12% Similarity=0.111 Sum_probs=282.9
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999999877655 23445 4455667899999 89999999999999999999
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
....+.+|...|.+++|++ ++.+|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 9998899999999999965 6779999999999999999999999999999999999999999999999986 678
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
|++||+.+++.+..+..+..+...+.+++|.+.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999999877667889999988765332 001 11245788999999999
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|++++.||.|++||+.++.....+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------------- 286 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLP------------------------------------------------------- 286 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEcc-------------------------------------------------------
Confidence 9999999999999987653221110
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecC
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 790 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 790 (1086)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEeecCCC-EEEEEe-CCeEEEEEccCceE-EEEEcC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001396 791 TDSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 791 ~~~~~~~~v~~l~~s~dg~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 866 (1086)
.+|...|.+++|+|++. ++++++ ||.|++||+.+++. +..+.. |...|.++.+. ++++|++++.||.|++|+
T Consensus 287 --~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 287 --SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp --CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEE
T ss_pred --cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEe
Confidence 01555677777777777 777776 57888888877643 555555 66778888654 577999999999999999
Q ss_pred cCCc---------eeEEEeccccCCeEEEEEeCCCC---EEEEEeCCCcEEEEECCC
Q 001396 867 ARSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 867 ~~~~---------~~~~~l~~h~~~v~~l~~spdg~---~l~s~s~dg~i~iwd~~~ 911 (1086)
+.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9873 22334567899999999999999 788888899999999875
No 49
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=348.27 Aligned_cols=384 Identities=12% Similarity=0.133 Sum_probs=288.7
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeee-cCCCccEEEEEECC-CCCEEEEEeC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYS 410 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp-dg~~las~~~ 410 (1086)
...|+|+++. +++++ .|+ .+|+.+.. + .+|.+.|.+++|+| ++++||+|+.
T Consensus 32 ~~~f~~~~~~-~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~ 84 (437)
T 3gre_A 32 YKEFGPIQEI-VRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSD 84 (437)
T ss_dssp CGGGCCCCCC-CCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEET
T ss_pred hhhcCCcccc-ccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecC
Confidence 3468999985 66554 377 45555543 4 78999999999999 9999999999
Q ss_pred CCEEEEEEecC---CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC---CCceeEEeecCCcceEE
Q 001396 411 KHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 411 d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~ 484 (1086)
||+|+|||+.+ +...+....+ +|...|.+++|+|+++ +|++++.|++|++||+. +++.+..+.+| .+..
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~ 159 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRK 159 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEE
T ss_pred CceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEE
Confidence 99999999987 5534333333 5999999999999999 89999999999999994 78877777766 6777
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE--EecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
+.+++.. +...+.++. +++++.++++++. ++.|++||+++++.+
T Consensus 160 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 160 INLKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERL 205 (437)
T ss_dssp EEGGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeee
Confidence 7775531 122334444 6689999999986 778999999999999
Q ss_pred eEEec--ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe----cCCCEEEEEEC
Q 001396 563 RTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIAN 636 (1086)
Q Consensus 563 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~ 636 (1086)
..+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ +++.+|++++.
T Consensus 206 ~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 206 QIIENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEEECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEEST
T ss_pred EEEccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcC
Confidence 99988 55 8999999999999999999999999999999999988863322 358899655 46889999999
Q ss_pred CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcc
Q 001396 637 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 716 (1086)
Q Consensus 637 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~ 716 (1086)
||.|++||+.+++.+..+.++...+..+.+.|
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 313 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP------------------------------------------------ 313 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSC------------------------------------------------
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecc------------------------------------------------
Confidence 99999999999888877776665554333332
Q ss_pred ccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCC
Q 001396 717 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 796 (1086)
Q Consensus 717 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 796 (1086)
+++.+ .+.. +.+..|.
T Consensus 314 ----------------------~~~~l----~~~~--------------------------------------~~~~~~~ 329 (437)
T 3gre_A 314 ----------------------IEKGL----EELN--------------------------------------FCGIRSL 329 (437)
T ss_dssp ----------------------BCSSG----GGCC--------------------------------------CCCCCSG
T ss_pred ----------------------ccccc----ccce--------------------------------------ecccccC
Confidence 21111 0000 0001267
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCC---CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 872 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 872 (1086)
..|.+++|+ ++++|++++ |+.|++||+.+++....+.+|. ..+....+++ ...+++.. |+...+..
T Consensus 330 ~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~ 399 (437)
T 3gre_A 330 NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHS 399 (437)
T ss_dssp GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC------
T ss_pred CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccc
Confidence 789999999 778888887 8999999999999888888754 3456667776 55555443 33344455
Q ss_pred EEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEE
Q 001396 873 ISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 873 ~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd 908 (1086)
......|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 400 ~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 400 VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5666779999999999998 78999999999999995
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-35 Score=360.45 Aligned_cols=300 Identities=18% Similarity=0.251 Sum_probs=253.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.....|.+|++.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~ 438 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVL 438 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEE
Confidence 344578999999999999998755799999999999999987543211 011227799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe---
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~--- 475 (1086)
+|+|++|++|+.|++|+|||+.+++..+ .+.+|...|.+++|+|+++ .|++|+.|++|++||..........
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCC
Confidence 9999999999999999999999987655 6789999999999999999 7999999999999997654333222
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+|...|.+++|+++.....+++++.|++|++||++..+....+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd 589 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWD 589 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEE
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 46889999999987655578999999999999999999999999999999999999999999999986 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC-----------------CCC
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPE 618 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~ 618 (1086)
+.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...
T Consensus 590 ~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 590 LAEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp TTTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred CCCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999988776543 5799999999988777665 56699999999998887753211 113
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+++|+|+|++|++|+.||.|++|++.
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 5689999999999999999999999975
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.8e-35 Score=323.15 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=266.2
Q ss_pred cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 433 ~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
.|.++|.+++|+|||+ +++++..++.+.+|+...........+|...|.+++|++ ++.+|++++ ||.|++||+.+
T Consensus 7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence 3567899999999999 787777777777776665555555557999999999954 778999998 99999999987
Q ss_pred Ccee---EEec--CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCC
Q 001396 513 LGAR---VDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 513 ~~~~---~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
.... ..+. .+...+.+++|+|+++++++++. ++.|++||+.+++ ....+..+. ..+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK 154 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence 6532 2222 67889999999999999999886 6789999999887 556666666 8899999999999
Q ss_pred EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeE
Q 001396 586 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
++++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++++++++.|+.|++||+.+++....+
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------- 221 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------- 221 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence 99999999999999999999998887653 46899999999999999999999999998754221110
Q ss_pred EccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEE
Q 001396 666 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 745 (1086)
Q Consensus 666 ~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 745 (1086)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEc
Q 001396 746 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 824 (1086)
Q Consensus 746 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~ 824 (1086)
.+...+.+++|+|+++++++++ ++.|++||+
T Consensus 222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 0233466777777777777776 577888888
Q ss_pred cCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 001396 825 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 904 (1086)
Q Consensus 825 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i 904 (1086)
.+++.. .+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus 254 ~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 254 NKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 776653 5677899999999999 8999999999999999999999887554 488999999999999999999999999
Q ss_pred EEEEC
Q 001396 905 FVWDV 909 (1086)
Q Consensus 905 ~iwd~ 909 (1086)
++|++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-34 Score=332.93 Aligned_cols=328 Identities=16% Similarity=0.223 Sum_probs=281.1
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+.|.+|.+.|.. +++++|+ +|++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3566787 599999999999999999988765 77899999999997
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
+.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999987655 678999999999996 45 79999999999999999999999999999
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999999999999999999998 8899999986 677999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC-CCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
+.+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 788887774 6799999999999999999999999887532 34568888885 67999999999
Q ss_pred cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccc
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 718 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~ 718 (1086)
.|++||+.+++.+..+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~------------------------------------------------------------- 401 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 401 (445)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence 9999999988766544210
Q ss_pred ccccCCcccccceEEEEEecCCceEEEeeccce----eEEeeccC
Q 001396 719 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 759 (1086)
Q Consensus 719 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~vw~~~~ 759 (1086)
....+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00125667888999999998888888887 88888764
No 53
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-34 Score=321.00 Aligned_cols=288 Identities=20% Similarity=0.224 Sum_probs=240.5
Q ss_pred eecCCCccEEEEEE-----CC-CCCEEEEEeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEE
Q 001396 385 LVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s 454 (1086)
.+.+|.+.|.+++| ++ |+++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 48899999999999 77 9999999999999999999865421 22346789999999999999999 8999
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec---CCCCceEEEEE
Q 001396 455 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAY 531 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~ 531 (1086)
|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999965 678999999999999999974 3333332 56778999999
Q ss_pred ecCC----------CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 532 SANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 532 s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
+|++ .++++++. ++.|++|| .+++....+.+|. ..|.+++|+|++++|++|+.||.|++||+
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9987 68888886 77899999 4567777888877 89999999999999999999999999999
Q ss_pred C-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeee--ecc-----------ccccceeeeEEc
Q 001396 602 N-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSVN 667 (1086)
Q Consensus 602 ~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~v~~~~~~ 667 (1086)
. .......+... ..|.+++|+|++.+++++ .|+.|++|++.+..... .+. +|...+.+++|+
T Consensus 243 ~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 243 LNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp SCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 4 44444444322 248999999999888755 57789999998765433 222 456667777775
Q ss_pred cCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 668 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 668 p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
|+|+++++++.|+.|++|++..
T Consensus 319 ----------------------p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 319 ----------------------ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred ----------------------CCCCeEEEecCCceEEEEEEEc
Confidence 7899999999999999999764
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-34 Score=334.11 Aligned_cols=305 Identities=17% Similarity=0.230 Sum_probs=267.2
Q ss_pred cceeeeeccCCCCc-eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 318 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V-~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
.....+|.+|.+.| .++.| +++ +|++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567889999886 55555 556 599999999999999999987765 77899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCce---
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 471 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~~--- 471 (1086)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ +++ ++++|+.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999998 99999999999999999987554 6789999999999994 556 899999999999999988763
Q ss_pred --------------------eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEE
Q 001396 472 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 531 (1086)
Q Consensus 472 --------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 531 (1086)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...+.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 4567889999988843 5679999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+|+++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 6789999999999999999888 899999997 5799999999999999999988776664
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeee-ccccccceeeeEEc
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 667 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~ 667 (1086)
.. ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 32 3467889999999999998 89999999999998875 67788889888885
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=347.00 Aligned_cols=332 Identities=11% Similarity=0.152 Sum_probs=273.1
Q ss_pred ccccEeEEEecCCCCcEEEEEE----------eCCCcEEEEeCCCCc---eeEEeecCCcceEEEeecccCCccEEEEEE
Q 001396 434 HVGNVNDLAFSAPCKQISVITC----------GDDKTIKVWDAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500 (1086)
Q Consensus 434 h~~~v~~v~~s~d~~~l~l~s~----------~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 500 (1086)
+...|.+++|+|+++. +++++ +.|+.|++||+.++. .+..+ .|...|.+++|++ ++.+|++++
T Consensus 11 ~~~~v~~~~~sp~g~~-~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~ 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIP-LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH--NNKIIAGAL 86 (416)
T ss_dssp EEEESCBCCBCSSSSC-EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS--SSSCEEEEE
T ss_pred hhhhcceEeeCCCCCC-EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC--CCCeEEEEc
Confidence 3346889999999875 78888 889999999999886 44444 5899999999954 678999999
Q ss_pred cCCeEEEEEcCC----CceeEEecCCCCceEEEEEecC-CCEEEEEeeCCCCceeEEEEeCCCCe------eeeEEeccc
Q 001396 501 VDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQ 569 (1086)
Q Consensus 501 ~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~ 569 (1086)
.||.|++||+.. ......+..|...|.+++|+|+ ++++++++. ++.|++||+.+++ ....+....
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN----NGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS----SSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC----CCeEEEEECCCCcccccccccccccccc
Confidence 999999999988 3467788889999999999998 889999876 6789999999886 333332222
Q ss_pred ccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC----CCCCceEEEecCC-CEEEEEECCC---cE
Q 001396 570 LQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNKNG-TLLAVIANEN---RI 640 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~-~~l~~~~~dg---~i 640 (1086)
.+...|.+++|+|+ +.++++++.||.|++||+.+++.+..+..+.. ...+.+++|+|++ .++++++.|+ .|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 23489999999999 78999999999999999999999988876531 3568999999997 6899999998 89
Q ss_pred EEEECCCCC-eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 641 KILETPESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 641 ~iw~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
++||+.++. ....+
T Consensus 243 ~~~d~~~~~~~~~~~----------------------------------------------------------------- 257 (416)
T 2pm9_A 243 LIWDLRNANTPLQTL----------------------------------------------------------------- 257 (416)
T ss_dssp CEEETTSTTSCSBCC-----------------------------------------------------------------
T ss_pred EEEeCCCCCCCcEEe-----------------------------------------------------------------
Confidence 999877531 00000
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
. .+|...|
T Consensus 258 -----------------------------------------------------------------------~-~~~~~~v 265 (416)
T 2pm9_A 258 -----------------------------------------------------------------------N-QGHQKGI 265 (416)
T ss_dssp -----------------------------------------------------------------------C-SCCSSCE
T ss_pred -----------------------------------------------------------------------e-cCccCce
Confidence 0 0166678
Q ss_pred eEEEeec-CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCC-CEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 800 PCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN-NVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 800 ~~l~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~-~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
.+++|+| ++++|++++ ||.|++||+.+++.+..+..|...|.+++|+| ++ ++|++++.||.|++||+.+++.....
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 8888888 888888887 78999999999999999999999999999999 66 89999999999999999876543222
Q ss_pred c-----------------------------------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 877 E-----------------------------------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 877 ~-----------------------------------~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
. .|..++.+++|+|||++|++++.|++|+||++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1 1677888999999999999999999999999986
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.3e-35 Score=330.07 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=250.2
Q ss_pred cceeeeeccCCCCceEeeecCCC-ceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg-~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
....+.+.+|.+.|++++|+|+| + +||+|+.||.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 45677889999999999999999 6 69999999999999999887665311 34799999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 397 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 397 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+|+| ++.+|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ ++++++.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33443323344568899999999999 8999999999999998 68889999
Q ss_pred ecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCC----CceeEEecCCCCceEEEEEec-CCCEEEEEeeCCCCce
Q 001396 476 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 549 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~ 549 (1086)
.+|...|.+++|++ ++. +|++++.|+.|++||+++ ......+ .+...+.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 556 899999999999999998 4444444 6888999999999 9999999986 77
Q ss_pred eEEEEeCCCCeeeeEEeccccc--------------CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
.|++||+.+++....+.++... ...+..++|+|++++ +++.||.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 8999999999888887765311 123444666677666 777999999999999999999987654
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
...+..++|+|++++|++++ |+.|++|++++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=350.16 Aligned_cols=341 Identities=10% Similarity=0.058 Sum_probs=250.8
Q ss_pred eeeeeccCCCCceEeeecCCC---------ceEEEE-------------------EeccCcEEEEecCCCceeeeeeeee
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV 371 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg---------~~lla~-------------------gs~dg~v~iwd~~~~~~~~~~~~~~ 371 (1086)
+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~---- 199 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK---- 199 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence 333444 56789999999986 5 4565 446788999999887643210
Q ss_pred eeccccceeeeeeeecCCCccEEEEEECCC------CCEEEEEeCCCEEEEEEecCCCcc--------ccceEecccccc
Q 001396 372 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN 437 (1086)
Q Consensus 372 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~ 437 (1086)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|...
T Consensus 200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 0114568899999999997 579999999999999999877532 123367899999
Q ss_pred EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcCCCce
Q 001396 438 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA 515 (1086)
Q Consensus 438 v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~ 515 (1086)
|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++++..++++ .+|++++.|++|++||+++.+.
T Consensus 269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999864 69999999999999999874 45678999999999954335566 7999999999999999988776
Q ss_pred eEEecCCC--CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC
Q 001396 516 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 593 (1086)
Q Consensus 516 ~~~~~~~~--~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 593 (1086)
...+..+. ..+.+++|+|+++.+++++. ++.|++||++++..+..+.+|. ..|.+++|+|++++|++|+.|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence 55554443 35789999999999988875 6689999999999888888887 999999999999999999999
Q ss_pred CcEEEEEcCCCeeEEEEcCC---CCCCCCceEEEecCCCEEEEEECCCcEEEEECC-CCCeeeeccccccceeeeEEccC
Q 001396 594 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI 669 (1086)
Q Consensus 594 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~p~ 669 (1086)
|+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999998654 22111100 0111356889999998553 222 23344333 45677788899999999999864
Q ss_pred CCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 670 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
+ +.+..+++|+.+|.|++|++.
T Consensus 495 ~-------------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 495 S-------------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp T-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred C-------------------CccHHHHhhccCceEEEEEcc
Confidence 2 236689999999999999976
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-34 Score=330.92 Aligned_cols=296 Identities=12% Similarity=0.125 Sum_probs=257.7
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCc------eeeeeeeeeeeccccceeeeeeeecCCCcc
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS 392 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 392 (1086)
.+.+++.+|.+.|++++|+| + +|++|+.||.|+|||+.+++ .+.. +.+|...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~ 64 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG 64 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence 45677899999999999999 4 59999999999999999987 3332 6689999
Q ss_pred EEEEEECCC----C---CEEEEEeCCCEEEEEEecCCCcccc--ceEeccc-----cccEeEEEec----CCCCcEE-EE
Q 001396 393 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAH-----VGNVNDLAFS----APCKQIS-VI 453 (1086)
Q Consensus 393 V~~l~~spd----g---~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h-----~~~v~~v~~s----~d~~~l~-l~ 453 (1086)
|.+++|+|+ | ++|++++.|+.|++||+.+++.... ...+..| ...|.+++|+ |+++ + |+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence 999999999 9 9999999999999999999875100 2256778 5899999999 9999 7 99
Q ss_pred EEeCCCcEEEEeCCC------CceeE-----Eee-------cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce
Q 001396 454 TCGDDKTIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 515 (1086)
Q Consensus 454 s~~~d~~i~iwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 515 (1086)
+++.|+.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++.+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence 999999999999998 77777 774 4899999999965 66 999999999999999999988
Q ss_pred eEEecC---C---CCceEEEEEecCCCEEEEEeeCCCCc---eeEEEEeCCCCeeeeEEec-------------ccccCC
Q 001396 516 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHN 573 (1086)
Q Consensus 516 ~~~~~~---~---~~~i~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~ 573 (1086)
...+.. + ...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |. .
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 292 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---S 292 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---S
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---C
Confidence 888888 7 889999999999999999986 5 8899999999999999988 66 8
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc------CC-------------CCCCCCceEEEecCC------
Q 001396 574 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG------ 628 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~------ 628 (1086)
.|.+++|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence 99999999999999999999999999999999999988 43 014569999999998
Q ss_pred ----CEEEEEECCCcEEEEECCCC
Q 001396 629 ----TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 629 ----~~l~~~~~dg~i~iw~~~~~ 648 (1086)
++|++++.||.|++|++.++
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=320.14 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=260.1
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
....|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 3456889999999999999998 599999999999999999987765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCc----
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 470 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~~---- 470 (1086)
|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987665 343 888999999999999 88889888 999999988664
Q ss_pred -------eeEEeecCCc--ceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 471 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 471 -------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...+.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3455566766 899999965 667999999999999999998 6777788889999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC--------------cEEEEEcCCCee
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 606 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~ 606 (1086)
++. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 986 77899999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
+..+..+. ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99988664 469999999999999999999999999998653
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=312.91 Aligned_cols=293 Identities=20% Similarity=0.272 Sum_probs=257.1
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.++.++|.+|.+.|++++| |++++ |++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677889999999999999 99984 89999999999999988876654 557899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999877655555578899999999999 556 799999999999999 7888889999
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 4455556665 788999999999999 777765 778999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence 9999999999887 899999999999 69999999999999999999999988664 3689999999998 667999
Q ss_pred CCcEEEEECCCCCeee
Q 001396 637 ENRIKILETPESNSVD 652 (1086)
Q Consensus 637 dg~i~iw~~~~~~~~~ 652 (1086)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999775544
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=323.30 Aligned_cols=300 Identities=12% Similarity=0.209 Sum_probs=251.0
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEec---cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
|....+.+.+|.+.|.+++|+|++++++++|+. ||.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 445566778999999999999999878888887 999999999998765431 22588999
Q ss_pred EEEEECCC---CCEEEEEeCCCEEEEEEecCCC-ccccceEeccccccEeEEE------ecCCCCcEEEEEEeCCCcEEE
Q 001396 394 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 394 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~------~s~d~~~l~l~s~~~d~~i~i 463 (1086)
.+++|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999999 7999999999999999999887 333 6789999999995 578898 8999999999999
Q ss_pred EeCCCCc-eeEEeecCCc----ceEEEeec--ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec---
Q 001396 464 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 533 (1086)
Q Consensus 464 wd~~~~~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--- 533 (1086)
||+.+++ .+..+..|.+ .+.+++|. .++++.++++++.||.|++||+++.+.... ..+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence 9999987 7888876665 78888842 245778999999999999999998876444 55677999999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe-----cccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCC---
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 604 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 604 (1086)
+++++++++. ++.|++||+++++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999976 7789999999887776665 665 8999999999998 7999999999999999854
Q ss_pred ----------------eeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCcEEEEECCCCC
Q 001396 605 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 649 (1086)
Q Consensus 605 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 649 (1086)
+.+..+..+ ...|.+++|+|++++|+ +++.|+.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345555555 45699999999999998 79999999999998653
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-33 Score=325.74 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=270.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ ++ ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6789887533 355579999999999999999999987665 678999999999998 45 799999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+++....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 358999999999999999999999999999999999998 7889999886
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.|++||+.+++.+..+.+|. ..|.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 6789999999999999998887 89999999 788999999999999999999999988876543 4555555
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998765433322110
Q ss_pred eeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCce
Q 001396 706 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 785 (1086)
Q Consensus 706 vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 785 (1086)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEE-----cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 786 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 786 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
..|...|.+++++ +.++++++ ||.|++||+.+++.+..+ ..+...|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155567777774 56788877 788999999999888887 46778999999999 89999999999
Q ss_pred Ce----EEEEEcCC
Q 001396 860 ST----ILIYNARS 869 (1086)
Q Consensus 860 g~----v~iwd~~~ 869 (1086)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 97 99999874
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=342.25 Aligned_cols=350 Identities=10% Similarity=0.047 Sum_probs=242.8
Q ss_pred CCccEEEEEECCCC---------CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 389 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 389 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
+.+.|.+|+|+|++ ++||+|+.++. + ...+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 56899999999987 79999986642 0 01368888 799999999
Q ss_pred cEEEEeCCCCcee----EEeecCCcceEEEeeccc----CCccEEEEEEcCCeEEEEEcCCCce-----------eEEec
Q 001396 460 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 520 (1086)
Q Consensus 460 ~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~ 520 (1086)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887753 456778899999999886 3467999999999999999976542 23567
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEE--EEecCC-CEEEEEECCCcE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 596 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i 596 (1086)
.+...|.+++|++++ .|++|+. |+.|++||++++. +...+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999864 7888876 7889999999774 445677877 899999 578887 899999999999
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceecc
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 676 (1086)
++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999988766665443222478999999999999999999999999987765544443
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
|...|.+++|+|+|+.+++++.||+|++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 455666677777777777777777777776
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEcc-CceEEEEEcC
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP 835 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~ 835 (1086)
.....+ ....+. ....+...+..++|+|+++.+.. .+.+.+|+.. ++..+..+.+
T Consensus 426 ~~~~~~---------------~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 426 AARRLL---------------HGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SCSSTT---------------TCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred chHhhc---------------cccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence 532210 000000 00002224668899999985533 2233344433 5677888999
Q ss_pred CCCCeEEEEEcCCC---CCEEEEEeCCCeEEEEEcCC
Q 001396 836 PSPTATSLAFNPHD---NNVIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 836 ~~~~i~~l~~s~~d---~~~lasg~~dg~v~iwd~~~ 869 (1086)
|...|.+++|+| + +.++|+|+.||.|+||++..
T Consensus 482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 999999999999 6 45999999999999999873
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.7e-33 Score=322.41 Aligned_cols=344 Identities=15% Similarity=0.201 Sum_probs=272.5
Q ss_pred eEEecCCCCce-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 516 RVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 516 ~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
...+..|...+ .++.+ +++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++ .+++|+.||
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTS
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCC
Confidence 34566676664 54444 6789999986 7789999999999999999888 999999999987 999999999
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEe--cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
+|++||+.+++.+..+..+. ..|.+++|+ ++++++++++.|+.|++||+.+............
T Consensus 184 ~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------------- 248 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD------------- 248 (464)
T ss_dssp CEEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-------------
T ss_pred CEEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-------------
Confidence 99999999999999888664 468999998 5789999999999999999987643322110000
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecccee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 752 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 752 (1086)
...+.+.+++...+
T Consensus 249 ----------------------------------------------------------~~~~~~~~~~~~~~-------- 262 (464)
T 3v7d_B 249 ----------------------------------------------------------YPLVFHTPEENPYF-------- 262 (464)
T ss_dssp ----------------------------------------------------------SSEEESCGGGCTTE--------
T ss_pred ----------------------------------------------------------cceEeeccCCCeEE--------
Confidence 00000111110000
Q ss_pred EEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEE
Q 001396 753 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL 831 (1086)
Q Consensus 753 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~ 831 (1086)
... +. +|...+.++ ++++.++++++ ||.|++||+.+++.+.
T Consensus 263 --------------------------------~~~--~~--~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 263 --------------------------------VGV--LR--GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp --------------------------------EEE--EC--CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred --------------------------------EEE--cc--CccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 000 00 256666655 68899999998 7999999999999999
Q ss_pred EEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 832 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 832 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
.+.+|...|.+++|+| +++++++|+.||.|++||+.+++++..+.+|...|.+++|+ +++|++++.||.|++||+.+
T Consensus 305 ~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 305 ILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 9999999999999999 89999999999999999999999999999999999999997 58999999999999999998
Q ss_pred CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 912 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
+.... ..... ..+..++|++++++++++.|+.|++||+.+++.+.....+|...|.+++|+ ++.++++++
T Consensus 382 ~~~~~----~~~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~ 451 (464)
T 3v7d_B 382 YSRKF----SYHHT-----NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVE 451 (464)
T ss_dssp CCEEE----EEECT-----TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEE
T ss_pred Cceee----eecCC-----CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEE
Confidence 65322 11111 257789999999999998899999999999999988777899999999997 445566666
Q ss_pred CCCcEEEEEc
Q 001396 992 VDGTLSIHEA 1001 (1086)
Q Consensus 992 ~Dg~v~vWd~ 1001 (1086)
.||.+.+|-+
T Consensus 452 ~~g~~~i~~l 461 (464)
T 3v7d_B 452 KDGQSFLEIL 461 (464)
T ss_dssp ETTEEEEEEE
T ss_pred eCCeEEEEEe
Confidence 7776665543
No 65
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-34 Score=323.25 Aligned_cols=295 Identities=16% Similarity=0.218 Sum_probs=248.4
Q ss_pred eeeccCCCCceEeeecCC---CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 322 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spd---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 345599999999999984 44456666667899999999887765311 1113347889999999
Q ss_pred CCC----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 399 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 399 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+|+ |++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| +++ +|++++.|+.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999987655 5779999999999999 777 89999999999999999999998
Q ss_pred Ee---ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe----------------------------cCC
Q 001396 474 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAP 522 (1086)
Q Consensus 474 ~~---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~----------------------------~~~ 522 (1086)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 78999999999965 6789999999999999999876543322 237
Q ss_pred CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee--------------eeEEecccccCCceEEEEEecC--CCE
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 586 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 586 (1086)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+..|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 8899999998 778998876 77899999988744 66677766 88999999999 999
Q ss_pred EEEEECCCcEEEEEcCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 587 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 587 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
|++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 44466666545679999999999999999999999999975
No 66
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.2e-33 Score=310.08 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=250.3
Q ss_pred ecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCCCccc--cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++... ....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 8899999999999997 6899999999999999998765422 3346789999999999999999 899999999999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCC--CEEE
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANG--RRLF 539 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~--~~l~ 539 (1086)
+|+...+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++ .+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999888888888888888754 66799999999999999987665543 456677889999998875 4566
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
+++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+. .+
T Consensus 190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v 259 (340)
T 4aow_A 190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---II 259 (340)
T ss_dssp EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CE
T ss_pred EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eE
Confidence 6664 6789999999999999999887 899999999999999999999999999999999998887653 48
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
.+++|+|++.++ +++.|+.|++||+.++..+..+..+..
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence 999999988655 556789999999987765544432110
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 760 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 760 (1086)
......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011237788999999999999999999999999987654
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-34 Score=327.86 Aligned_cols=272 Identities=12% Similarity=0.177 Sum_probs=210.8
Q ss_pred ccceeeee-ccCCCCceEeeecC-CCceEEEEEeccCcEEEEecCC---CceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 317 PKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 317 p~~~~~~l-~~h~~~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
...++..+ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|..
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~~ 112 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCSS 112 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECSS
T ss_pred cceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCCC
Confidence 35677788 89999999999999 998 599999999999999977 432110 00114899
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEec---CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
.|.+++|+|++++|++|+.||+|++||+. +++..+ .+.+| .+..+.|+|++
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~--------------------- 166 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG--------------------- 166 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS---------------------
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc---------------------
Confidence 99999999999999999999999999995 554333 33444 67777777643
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC--CCCceEEEEEecCCCEEEEEeeCCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+...+.++.+...+++.+|++++.||.|++||+++.+....+.. +...|.+++|+|++++|++++.
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--- 234 (437)
T 3gre_A 167 ---------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--- 234 (437)
T ss_dssp ---------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---
T ss_pred ---------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---
Confidence 23334455544566888999999999999999999999888887 7789999999999999999986
Q ss_pred CceeEEEEeCCCCeeeeEEe-cccccCCceEEEEEe----cCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC------
Q 001396 547 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG------ 615 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~------ 615 (1086)
++.|++||+++++.+..+. .+. ..|.+++|+ +++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 -dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 235 -RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH 310 (437)
T ss_dssp -TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred -CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence 6789999999999998886 555 689999665 4677999999999999999999999988875532
Q ss_pred ------------------CCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 616 ------------------LPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 616 ------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
...|.+++|+ ++++|++++.|+.|++||+.+++
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 1224455555 44555555555555555555443
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-34 Score=333.32 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=239.6
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+...+|...|+|++|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|.+|+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFN 173 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEEC
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEe
Confidence 3455678999999999999654479999999999999998876543211 56899999999999
Q ss_pred C-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 400 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 400 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
| ++.+|++|+.||+|+|||++++. +........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h 249 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMH 249 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecc
Confidence 8 78999999999999999998754 222222233455688999999999 89999999999999975 5677888999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++||
T Consensus 250 ~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd 324 (435)
T 4e54_B 250 KKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYS 324 (435)
T ss_dssp SSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEE
T ss_pred cceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEE
Confidence 9999999997653 3488999999999999998766543 33467789999999999999999986 77899999
Q ss_pred CCCCeeeeEEeccccc---CCceEEEEEecCCCEEEEEE------------CCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 556 ESEGAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
+.+++....+..|... ...+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~ 403 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGIS 403 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCC
T ss_pred CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEE
Confidence 9999888777665411 11233456777777776654 34679999999999988875432 34567
Q ss_pred eE-EEecCCCEEEEEECCCcEEEEECCCCCe
Q 001396 621 RI-CFNKNGTLLAVIANENRIKILETPESNS 650 (1086)
Q Consensus 621 ~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 650 (1086)
++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 76 6999999999876 78999999998754
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-33 Score=313.46 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=172.3
Q ss_pred CCCCeeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 795 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999988665 6899999999999999886 778899999999 99999999855 57777777776
Q ss_pred eEE--EeccccCCeEEEEEeCCCCEEEEEeCCC----cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 872 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 872 ~~~--~l~~h~~~v~~l~~spdg~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++........ ......++.. .|++++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence 553 4457899999999999999999999887 688899887553322 2223334443 79999999999999
Q ss_pred EE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 946 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 946 ~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++||||+.|++|+|||++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 588999999999999998878899999999999999999999999999999999754
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-33 Score=316.42 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=247.7
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCc--eeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+..|.++|++++|+|+|+ +||+|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 58999999999999999886 4433 6689999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---e-EEeec
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG 477 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~---~-~~~~~ 477 (1086)
+++|++++.|+.|++||+.+++.... ..+..|...|.+++|+|+++ ++++++.|+.|++||+.++.. . .....
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 99999999999999999988764332 23567999999999999999 899999999999999998873 2 33367
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcC------------------CCceeEEecCCCCceEEEEEecCCCEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
|...|.+++|++ ++.+|++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999965 66799999999999999953 5667778888889999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--CeeE----------
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 607 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 607 (1086)
+++. ++.|++||+.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 7789999999999999999877 899999999999877777 999999999988 5311
Q ss_pred ----------------------------EEEcCCCCCCCCceEEEe-cCC---CEEEEEECCCcEEEEECCCC
Q 001396 608 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 608 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 648 (1086)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1445578999866 566 99999999999999998754
No 71
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=314.03 Aligned_cols=298 Identities=16% Similarity=0.234 Sum_probs=247.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
..+|.+.+.+..+++++.. +++++.|+.|+|||+.+++..... ...|...|.+++|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGS 147 (401)
T ss_dssp CTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSS
T ss_pred CCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCC
Confidence 3478777666555555555 667778999999999999876541 224889999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v 482 (1086)
+||+|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+. .+..+..+.+|.+.|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999987655 677999999999994 45 89999999999999999 567788899999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999965 6789999999999999999999999999999999999999998765554331 123778999999999998
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcE
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 640 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 640 (1086)
..+.. . ..+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|
T Consensus 298 ~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 298 NTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 88864 3 5899999999999999954 8999999999998776665433445679999999999999999999999
Q ss_pred EEEECCCCCeeeec
Q 001396 641 KILETPESNSVDAA 654 (1086)
Q Consensus 641 ~iw~~~~~~~~~~~ 654 (1086)
++|++.+++.+...
T Consensus 374 ~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 374 KFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCC-------
T ss_pred EEEECCCCcccccc
Confidence 99999988665543
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=309.64 Aligned_cols=288 Identities=12% Similarity=0.143 Sum_probs=259.5
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 384 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
..+.+|...|.+++|+|+|++||+++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3488999999999999999999999999999999999987655 6789999999999999999 8999999999999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCc-----------eeEEecCCCC--c
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLG-----------ARVDYDAPGL--G 525 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~-----------~~~~~~~~~~--~ 525 (1086)
||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+.... ....+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999988 889999999955 67899999999 999999987654 2233344444 8
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999876 77899999998 78888888877 89999999999999999999999999999999
Q ss_pred eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--------------cEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 605 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 605 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
+.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++|+
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 3589999999999999999988 89999999999999999999999999996
Q ss_pred CceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 671 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
|+++++++++.|+.+++|++..
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECcc
Confidence 7889999999999999999864
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-34 Score=325.84 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=227.4
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC--ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+..|.++|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 345667999999999998 5999999999999999987 44432 7789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeEEeec-
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 477 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~---~~~~~~~- 477 (1086)
+++||+++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999873444446778999999999999999 79999999999999999887 4778888
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC------------------CceeEEecCCCCceEEEEEecCCCEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
|...|.+++|++ ++.+|++++.|+.|++||+.. ......+ .+...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 678999999999999999853 3334445 7888999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCee----eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe----------
Q 001396 540 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 605 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------- 605 (1086)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|++++|++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9986 77899999999987 77888877 899999999999988888766655 66654211
Q ss_pred -----------------------------eEEEEcC-----------CCCCCCCceEEEecC-CC---EEEEEECCCcEE
Q 001396 606 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 641 (1086)
Q Consensus 606 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 641 (1086)
....... ..+...|.++++.+. +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 014456888886653 33 699999999999
Q ss_pred EEEC
Q 001396 642 ILET 645 (1086)
Q Consensus 642 iw~~ 645 (1086)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-33 Score=314.88 Aligned_cols=299 Identities=11% Similarity=0.118 Sum_probs=232.2
Q ss_pred CCceEeeecCCCceEEEEEeccC-------cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVG-------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
-+|++++|+|||+ +||+|+.|. .|+||++..+.......+ .......+.+|+..|.+++++
T Consensus 15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~-- 82 (365)
T 4h5i_A 15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS-- 82 (365)
T ss_dssp SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--
T ss_pred CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--
Confidence 3899999999998 688887543 599999987654321111 111222377899999888774
Q ss_pred CCEEEEE-----------eCCCEEEEEEecCCCccccc-e-----EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 402 GSLLGVA-----------YSKHIVQLYAYHGGSDARQQ-L-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 402 g~~las~-----------~~d~~i~iwd~~~~~~~~~~-~-----~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+..+++| +.|+.+++|++.++...... . ....+...+.+++|||||+.+.+++++.|++|+||
T Consensus 83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence 5566665 35778999999876432111 1 12234566899999999996556677789999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE--ecCCCCceEEEEEecCCCEEEEEe
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
|+++++++..+. |...|.+++|+ +||.++++++.+ .+++|+..++..... ...+...+.+++|+|+++++++++
T Consensus 163 d~~~~~~~~~~~-~~~~V~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 163 DPSDLTEKFEIE-TRGEVKDLHFS--TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ETTTTEEEEEEE-CSSCCCEEEEC--TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred ECCCCcEEEEeC-CCCceEEEEEc--cCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999886 78889999995 477899998855 566666666665543 345677899999999999999998
Q ss_pred eCCCCceeEEEEeCCCCee----eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE-cCCCCCC
Q 001396 543 TSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLP 617 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~ 617 (1086)
.++.....+++|+...+.. ...+.+|. ..|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..| ..
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred cCCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 8666566889999877654 33455555 89999999999999999999999999999999999876 445 45
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.|.+++|+|||++|++++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 6999999999999999999999999999754
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=321.81 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=240.9
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcC-----------CCCC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 616 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 616 (1086)
..+++|+...++....+.+|. ..|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 346778888888888888877 9999999999 999999999999999999998765443321 1244
Q ss_pred CCCceEEEec-CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 617 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 617 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
..|.+++|+| ++.++++++.||.|++||+.++.....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5689999999 77899999999999999987653222111
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeec---CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~---dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 851 (1086)
+...+.++++++ ++.++++++ +|.|++||+.+++.+..+..|...|.+++|+| +++
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 122333444444 445777776 68899999999988899999999999999999 665
Q ss_pred -EEEEEeCCCeEEEEEcCCce-eEEEe---------------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 001396 852 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 852 -~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 79999999999999998765 33444 57899999999999999999999999999999998664
Q ss_pred eeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC
Q 001396 915 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg 994 (1086)
.............. ...........+.+++++.++.|++||+.+++.+.. +.+|...|++++|+|||++|++++.||
T Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 32111111111111 122333344456666668999999999999998887 568999999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 995 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 995 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.|++||+.+++.+....... ....+.|.....+...+.+|.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998875443111 1122333345677788899999999875
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4e-32 Score=311.01 Aligned_cols=291 Identities=16% Similarity=0.252 Sum_probs=245.0
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
..+.|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 47889999875 588876 8999999999998775422 567889999999999999999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeecCCcceEEEeec
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~ 488 (1086)
.||+|+|||+.+++.++ .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 678999999998885 45 8999999999999998864 4567889999999999985
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecCCCE-EEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
+ ++.++++++.|+.+++|+...++. ......+...|.+++|+|++.. +++++. ..|+.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 4 678999999999999999987653 4566778889999999997654 444443 337899999999999998
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
.+..+. .+.++.|+++++.+++++ .|+.|+|||+.+++++..+.+|. ..|.+++|+|+|++|++++.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 78999999999999999998764 4699999999999999999999999
Q ss_pred EEECCCCCeeeecccc
Q 001396 642 ILETPESNSVDAAGVL 657 (1086)
Q Consensus 642 iw~~~~~~~~~~~~~~ 657 (1086)
+||+.+..+......+
T Consensus 390 iWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 390 LWRCFELDPARRRERE 405 (420)
T ss_dssp EECCSCSSCC------
T ss_pred EEECCCCCccchhhhc
Confidence 9999876555444433
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.2e-33 Score=300.07 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=211.6
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC--ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|.+.|.+++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~s 62 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDWA 62 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEEC
T ss_pred eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEec
Confidence 45789999999999999998 5999999999999999754 33332 78999999999998
Q ss_pred CC--CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce--eE
Q 001396 400 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--TY 473 (1086)
Q Consensus 400 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~~--~~ 473 (1086)
|+ |++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ..
T Consensus 63 ~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 63 HPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp CGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred CCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeee
Confidence 74 899999999999999999987522 23357789999999999998 77 899999999999999987642 46
Q ss_pred EeecCCcceEEEeecccC-----------CccEEEEEEcCCeEEEEEcCCCc----eeEEecCCCCceEEEEEecCC---
Q 001396 474 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG--- 535 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d~--- 535 (1086)
.+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 778999999999998752 35799999999999999998766 445778899999999999995
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++|++++. |+.|++||+.++.. .........+...|.+++|+|++++|++++.||.|++|+..
T Consensus 220 ~~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 220 SYMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEEEC----CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78999886 77899999887431 11121111224789999999999999999999999999986
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.3e-33 Score=314.15 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=243.1
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 630 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 630 (1086)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 44555666777788877 999999999999 899999999999999999998888887655566799999999 7899
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|++++.|+.|++||+.+. .+..+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999998732 1110000
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecC
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 790 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 790 (1086)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001396 791 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 791 ~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~ 868 (1086)
..++...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.
T Consensus 159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence 001456788889999999998887 689999998 5778888889999999999999 777 99999999999999999
Q ss_pred C----ceeEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeec--cCCCcc-------CCCCce
Q 001396 869 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET 934 (1086)
Q Consensus 869 ~----~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~ 934 (1086)
+ +..+..+ +|.+.|.+++|+| ++++|++++.|+.|++||+.+++......... ...+.. ..+.+.
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 8 5666666 6999999999999 99999999999999999998866432211110 001111 002344
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCccceeccccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 935 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
.++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4666666666 2257899999999999998875532 467788889999999999997 99999999874
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.5e-33 Score=311.92 Aligned_cols=344 Identities=12% Similarity=0.076 Sum_probs=256.0
Q ss_pred cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 520 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 520 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
..+..+|.+++|+|+++++++++. ++.|++||+.+++ .+..+.+|. ..|.+++|+|+++++++++.||.|+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAY 77 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEE
Confidence 457789999999999999999875 7789999999987 888888877 8999999999999999999999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccc
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
+||+.+++.........+...+.+++|+|++++|++++.|+.|++|++...........
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------------------- 136 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH--------------------- 136 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE---------------------
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee---------------------
Confidence 99999998776665545556799999999999999999999999999876532111000
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
....|...|.+++|+|++..+++++.||.+++|++
T Consensus 137 ---------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 137 ---------------------------------------------IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp ---------------------------------------------ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ---------------------------------------------eecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 00114556777777777777777777777777765
Q ss_pred cCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCC
Q 001396 758 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS 837 (1086)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~ 837 (1086)
..... .... .. .+.+. ...+++.+..+..|.
T Consensus 172 ~~~~~-----------------~~~~-----------~~--------~~~~~-------------~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 172 YIKEV-----------------EERP-----------AP--------TPWGS-------------KMPFGELMFESSSSC 202 (372)
T ss_dssp CCTTT-----------------SCCC-----------CC--------BTTBS-------------CCCTTCEEEECCCCS
T ss_pred ccccc-----------------cccc-----------cc--------ccccc-------------ccchhhheEecCCCC
Confidence 43210 0000 00 00000 134567778888899
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC--Ccee
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--WGIQ 915 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~--~~~~ 915 (1086)
..|.+++|+| ++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|+++ .|+.|++|++.. +.
T Consensus 203 ~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~-- 278 (372)
T 1k8k_C 203 GWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK-- 278 (372)
T ss_dssp SCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE--
T ss_pred CeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce--
Confidence 9999999999 89999999999999999999999999999999999999999999988877 899999999987 43
Q ss_pred eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEE---EcCCccce------eccccCCccCEEEEEEe-CCC-
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY---EAEELTCL------KQWFPISSVPISQATFS-CDC- 984 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw---d~~~~~~~------~~~~~~h~~~v~~l~fs-~dg- 984 (1086)
...+.....+.. . ..+....+.+| +.. +... ..+..+|...|++++|. ++|
T Consensus 279 -~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~ 340 (372)
T 1k8k_C 279 -LSFGGRLDVPKQ------S----------SQRGLTARERFQNLDKK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 340 (372)
T ss_dssp -EEECCCCCCC------------------------CHHHHHHHCCCC-C---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred -EEEeeccCcccc------c----------hhhhcchhhhhhhcccc-cccccCccccccccccccCCcceeEEecCCCc
Confidence 122222222111 0 11122334444 322 2222 33345899999999855 677
Q ss_pred --CEEEEEECCCcEEEEEcCCCcee
Q 001396 985 --RMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 985 --~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
.+|++++.||+|++|++.+++.+
T Consensus 341 ~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 341 KCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp SCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred ceeeEEEecCCCceEEEEecChhHh
Confidence 99999999999999999886543
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-33 Score=323.72 Aligned_cols=303 Identities=12% Similarity=0.113 Sum_probs=231.0
Q ss_pred eeEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEECCCc
Q 001396 562 KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENR 639 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~ 639 (1086)
.....+|. ..|++++|+| +++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+
T Consensus 112 ~~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 34445555 7899999999 46689999999999999999887766666556667899999998 7899999999999
Q ss_pred EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
|++||+.++... .+
T Consensus 189 v~iwd~~~~~~~-~~----------------------------------------------------------------- 202 (435)
T 4e54_B 189 TRLQDFKGNILR-VF----------------------------------------------------------------- 202 (435)
T ss_dssp EEEEETTSCEEE-EE-----------------------------------------------------------------
T ss_pred EEEeeccCCcee-EE-----------------------------------------------------------------
Confidence 999997643110 00
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
...+ .+...+
T Consensus 203 ----------------~~~~------------------------------------------------------~~~~~~ 212 (435)
T 4e54_B 203 ----------------ASSD------------------------------------------------------TINIWF 212 (435)
T ss_dssp ----------------ECCS------------------------------------------------------SCSCCC
T ss_pred ----------------eccC------------------------------------------------------CCCccE
Confidence 0000 133456
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE---
Q 001396 800 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--- 875 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--- 875 (1086)
.+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|++||+.+++....
T Consensus 213 ~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~ 291 (435)
T 4e54_B 213 CSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY 291 (435)
T ss_dssp CCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred EEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence 7789999999999998 7999999986 4566778889999999999995556899999999999999988765433
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-------
Q 001396 876 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------- 948 (1086)
Q Consensus 876 l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------- 948 (1086)
..+|...|++++|+|||++|++++.||.|+|||+.+++........... . .....+....|+|++.+++++
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR-H-FQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC-C-CSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc-c-cccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 3579999999999999999999999999999999987643321111100 0 000123345566666666553
Q ss_pred ------eCCeEEEEEcCCccceeccccCCccCEEEE-EEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 949 ------HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 949 ------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
.++.|++||..+++.+..+..+|...|.++ +|+|||.+|++|+ |++|+||++.+++..
T Consensus 370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 370 KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888899999887 6999999999875 889999999988754
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-32 Score=312.47 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.3
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc------eeEEecCCCCceEEEEEecC----C---CEE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 538 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~d----~---~~l 538 (1086)
...+.+|.+.|++++|++ .+|++++.||.|++||+...+ ....+..+...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999965 599999999999999999987 67788899999999999999 9 999
Q ss_pred EEEeeCCCCceeEEEEeCCCCee-----eeEEeccccc--CCceEEEEEe----cCCCE-EEEEECCCcEEEEEcCC---
Q 001396 539 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 603 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~--- 603 (1086)
++++. ++.|++||+.+++. +..+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99886 67799999998887 7888877322 3799999999 99999 99999999999999998
Q ss_pred ---CeeEE-----EEcC-----CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 604 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 604 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
++.+. .+.. ..+...+.+++|+|++ ++++++.|+.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66555 5543 3334568999999999 999999999999999875432211110
Q ss_pred CceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccc
Q 001396 671 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 750 (1086)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 750 (1086)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCC---CCCeeEEEeecCCCEEEEEe-C---CeEEEEE
Q 001396 751 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI 823 (1086)
Q Consensus 751 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~v~~l~~s~dg~~l~~~~-d---g~i~iwd 823 (1086)
. .+| ...|.+++|+|++++|++++ + |.|++||
T Consensus 226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence 0 014 66788999999999999887 6 8999999
Q ss_pred ccCceEEEEEcC-------------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec------cc-----
Q 001396 824 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH----- 879 (1086)
Q Consensus 824 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h----- 879 (1086)
+.+++.+..+.. |...|.+++|+| ++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 999999999988 999999999999 89999999999999999999999999999 88
Q ss_pred ----------cCCeEEEEEeCCC----------CEEEEEeCCCcEEEEECCCC
Q 001396 880 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 880 ----------~~~v~~l~~spdg----------~~l~s~s~dg~i~iwd~~~~ 912 (1086)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999874
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.6e-32 Score=331.96 Aligned_cols=211 Identities=18% Similarity=0.303 Sum_probs=184.3
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeecCCcceEEEeecccCCccEEEEEEcCCe
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 504 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 504 (1086)
.+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++|+.||+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence 57799999999999998654 8999999999999998764 34578899999999999954 7789999999999
Q ss_pred EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC
Q 001396 505 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 584 (1086)
Q Consensus 505 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 584 (1086)
|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999999999999999999999999999999986 7789999987655444433333345889999999987
Q ss_pred --CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 585 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 585 --~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
..+++++.|++|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 579999999999999999999998888664 469999999999999999999999999988653
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=312.21 Aligned_cols=317 Identities=11% Similarity=0.030 Sum_probs=248.2
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+.-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg-- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE-- 64 (588)
T ss_dssp CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence 34456999999999998 699999999999 7555432 45899999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc----
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA---- 480 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---- 480 (1086)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |..
T Consensus 65 -----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 65 -----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 4555555554332211 12 5688999999999999 799999999999999544 667777 766
Q ss_pred -ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-------eEEe----cCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 481 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 481 -~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
.|.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. |
T Consensus 130 ~sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D 201 (588)
T 2j04_A 130 RTYHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N 201 (588)
T ss_dssp TCEEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred ccEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence 499999954 788999999999999999998753 3454 5567799999999999 666654 7
Q ss_pred eeEEEEeCCCCeee---eEEe-cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 549 SFLVEWNESEGAIK---RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~---~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
+.|++||+.++... +++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++......+ +...+..++|
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~ 273 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPL 273 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence 78999999987743 4564 554 899999999 58888887 69999999998887544433 3457999999
Q ss_pred --ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 625 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 625 --s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+|++..+++++.+|+ ++|.... +++ +|++..+++. |+
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~ 312 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK 312 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence 999999999999999 9999771 223 4777777775 89
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeec
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 748 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 748 (1086)
++++|+..... +. ...+...|.+++|+|||+.+++++.
T Consensus 313 ~v~lW~~~g~~------l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 313 KFKKWSTIWNE------FN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHTTTTTTS------SS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCCc------ee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 99999864322 11 1113567999999999998887765
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-32 Score=297.21 Aligned_cols=252 Identities=17% Similarity=0.298 Sum_probs=213.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~i 463 (1086)
+.+|...|.+++|+|||++||+|+.|++|+|||+.++. .+....+.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 77899999999999999999999999999999997542 1233478899999999999864 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecC-----
Q 001396 464 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 534 (1086)
Q Consensus 464 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 534 (1086)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998765578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEeeCCCCceeEEEEeCCCCe----eeeEEecccccCCceEEEEEecCC---CEEEEEECCCcEEEE
Q 001396 535 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 599 (1086)
Q Consensus 535 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw 599 (1086)
+++|++++. ++.|++||+++++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 7789999998765 556777777 899999999984 789999999999999
Q ss_pred EcCCCe--e-EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 600 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 600 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
|+.++. . ...+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998743 1 22332233345689999999999999999999999999763
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-31 Score=291.64 Aligned_cols=297 Identities=16% Similarity=0.262 Sum_probs=243.9
Q ss_pred Cccceeeeec--cCCC--CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 316 FPKTVAQTLI--EGSS--SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 316 ~p~~~~~~l~--~h~~--~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
+|....++|. +..+ ..++|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|..
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~ 68 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGE 68 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTC
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCC
Confidence 3444445554 3332 35789999987 578775 8999999999999876422 567889
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-c
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S 470 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~ 470 (1086)
.|.+++|+|+|++||+|+.||+|++||+++++.++ .+.+|...+.++.+. +. .+++++.++.+++|+..++ .
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSC
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCce
Confidence 99999999999999999999999999999997665 677999988876654 55 7999999999999998876 4
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
.+..+.+|...+..+.+.+ ++.++++++.||.|++||+.+++. ......+...+.+++++|++..++.... +.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 218 (318)
T 4ggc_A 142 HVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GT 218 (318)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CT
T ss_pred eEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cC
Confidence 5677889999999999854 667999999999999999987653 3455667788999999998765553322 23
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
.++.|++||............. ..+..+.|+|+++.+++++ .|+.|++||+.+++++..+..|. ..|.+++|
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~ 292 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTM 292 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEE
T ss_pred CCCEEEEEecccccccccccce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEE
Confidence 3778999999988776665543 5899999999999988765 79999999999999999998764 46999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCC
Q 001396 625 NKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+|+|++|++++.||+|++||+.+.
T Consensus 293 spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 293 SPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999998754
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=310.16 Aligned_cols=347 Identities=14% Similarity=0.129 Sum_probs=247.8
Q ss_pred ceeeeeccCCCCceEeeecC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.....+.+|.+.|++++|+| +|+ +||+|+.||.|+|||+.+++.......... .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence 45567789999999999999 998 599999999999999999876653221100 0000011246999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC---CCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 398 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 398 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
|+| ++.+|++++.||.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 78899999999999999999987554 22 47788999999884 44 78999999999999999999999
Q ss_pred EeecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCc-eeEEe---------------cCCCCceEEEEEecCCC
Q 001396 474 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLG-ARVDY---------------DAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~-~~~~~---------------~~~~~~i~~~~~s~d~~ 536 (1086)
.+.+|...|.+++|++ ++. ++++++.||.|++||++... ....+ ..+...|.+++|+|+++
T Consensus 181 ~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 181 ILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 9999999999999965 444 69999999999999998765 23333 45677899999999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc--cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999986 67799999999887655543321 11222223333445677788889999999999999999998664
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
..|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. ......
T Consensus 335 --~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~ 388 (408)
T 4a11_B 335 --KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFEDA 388 (408)
T ss_dssp --SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred --CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------ccccee
Confidence 46999999999999999999999999999988766544322211 1111 123445
Q ss_pred ceeccccCccceeeee
Q 001396 695 EISVEAENKSEVEKPL 710 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~ 710 (1086)
+.+.+.++.+++|+..
T Consensus 389 ~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------
T ss_pred ecccCccCceeecCCc
Confidence 5677788999999753
No 87
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=315.98 Aligned_cols=331 Identities=10% Similarity=0.035 Sum_probs=249.3
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
.-...|.+++|+|||+++|+++. |++|+ |...++.+ .+|. ..|.+++|+|+| .++.+.+|+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~l---~gh~---~~v~~V~FsPdg-------~~~~~~~~~ 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKDI---NCNS---KNLFHVKEFPLE-------FENKLDFEL 73 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSCC---SSBG---GGTEEEEEECCC-------CCCTTTTSC
T ss_pred HhhccEEEEEECCCCCEEEEEcC----Cceee--ccccccee---cCCC---ccEEEEEECCCC-------CcceEEEEe
Confidence 34468899999999999999986 77888 75555443 5666 899999999998 455555555
Q ss_pred cCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 601 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
.+. ...+.... ...|.+++|||+|.+||+++.||.|++|+... .+..+. |...+
T Consensus 74 ~~~---~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~------------------- 127 (588)
T 2j04_A 74 AQQ---NGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL------------------- 127 (588)
T ss_dssp CCS---SCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS-------------------
T ss_pred CCC---ceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc-------------------
Confidence 432 22232122 45799999999999999999999999999543 222111 11100
Q ss_pred eeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCC
Q 001396 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 760 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 760 (1086)
....+.+++|||||+.|++++.||+|++|++..+
T Consensus 128 ----------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 128 ----------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp ----------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred ----------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 1345889999999999999999999999987653
Q ss_pred ccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE---EEEE-cCC
Q 001396 761 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPP 836 (1086)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~-~~~ 836 (1086)
.... +++ ..+.+......+|...|.+++|+||| +++++.|++|++||+.++.. .+++ .+|
T Consensus 162 ~l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 162 SENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNAS 225 (588)
T ss_dssp TTTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred cccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccc
Confidence 2100 000 00122211122488899999999999 55555689999999988773 3566 478
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEE--eCCCCEEEEEeCCCcEEEEECCCCce
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~--spdg~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
...|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 226 ~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--- 297 (588)
T 2j04_A 226 RRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--- 297 (588)
T ss_dssp SSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS---
T ss_pred cCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc---
Confidence 8899999999 37899887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 915 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus 298 ---------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 ---------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ---------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ---------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988775 9999999976554 332 333 77899999999999999886
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.5e-32 Score=304.44 Aligned_cols=294 Identities=17% Similarity=0.223 Sum_probs=246.5
Q ss_pred eeecCCCccEEEEEECCC----CCEEEEEeCCCEEEEEEecCCCccccceEec--cccccEeEEEecCC----CCcEEEE
Q 001396 384 ALVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVI 453 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d----~~~l~l~ 453 (1086)
.+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+.....+. .|...|.+++|+|+ ++ +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346789999999999984 4566666677799999999887665443332 26688999999999 55 899
Q ss_pred EEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe---cCCCCceEEEE
Q 001396 454 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMA 530 (1086)
Q Consensus 454 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~ 530 (1086)
+|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++++....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 9999999999999999999999999999999999652 5679999999999999999998888887 67888999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec-------------------------ccccCCceEEEEEecCCC
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~ 585 (1086)
|+|+++++++++. ++.|++||+++++....+.. ...+...|.+++|+ ++
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 9999999999986 67899999998776544432 00133889999999 67
Q ss_pred EEEEEECCCcEEEEEcCCCee--------------EEEEcCCCCCCCCceEEEecC--CCEEEEEECCCcEEEEECCCCC
Q 001396 586 QILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
++++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999999999987643 5666655 346899999999 9999999999999999999875
Q ss_pred ee----eecccc--ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 650 SV----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 650 ~~----~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
.. ..+.+| ...|.+++|+ |+++++++++.|+.|++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 43 366666 6889988886 788999999999999999964
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=312.34 Aligned_cols=301 Identities=13% Similarity=0.203 Sum_probs=233.9
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC------------ccE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 393 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V 393 (1086)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCce
Confidence 4677999999999998 5999999999999999987631100000 000112266888 889
Q ss_pred EEEEECCCC--CEEEEEeCCCEEEEEEecCCCcccc------------------------------------c-eEeccc
Q 001396 394 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDARQ------------------------------------Q-LEIDAH 434 (1086)
Q Consensus 394 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~~------------------------------------~-~~~~~h 434 (1086)
.+++|+|++ .+|++++.|++|++||+.+++.... . ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 8999999999999999987443100 0 113589
Q ss_pred cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeE-------EeecCCcceEEEeecccCCc-cEEEEEEcCCeE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 505 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i 505 (1086)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999965 54 799999999999
Q ss_pred EEEEcCCCce----eEEecCCCC------------ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecc
Q 001396 506 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 568 (1086)
Q Consensus 506 ~vwd~~~~~~----~~~~~~~~~------------~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 568 (1086)
++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998886 677777775 899999999999999886 36799999997 8888899887
Q ss_pred cccCC------------ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----------------------
Q 001396 569 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 613 (1086)
Q Consensus 569 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 613 (1086)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 614 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 614 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.....|..++|+|++++||+++.++ +.+|..+
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7777644
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-32 Score=300.16 Aligned_cols=253 Identities=15% Similarity=0.195 Sum_probs=206.4
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 400 (1086)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|...|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 34679999999999999998 599999999999999988753221 11779999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce---eEE
Q 001396 401 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 474 (1086)
Q Consensus 401 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~~---~~~ 474 (1086)
++++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999987422 23357799999999999998 66 799999999999999987642 355
Q ss_pred eecCCcceEEEeecccC---------------CccEEEEEEcCCeEEEEEcCCC---ceeEEecCCCCceEEEEEecCC-
Q 001396 475 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANG- 535 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~---------------~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~d~- 535 (1086)
+.+|...|.+++|++.. ++.+|++++.|++|++||++.. .....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997652 1468999999999999999755 3455678899999999999987
Q ss_pred ---CEEEEEeeCCCCceeEEEEeCCCCe----eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 536 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 536 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++|++++. |+.|++||+.+.. ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 7789999987631 223445555 899999999999999999999999999976
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-31 Score=289.24 Aligned_cols=280 Identities=15% Similarity=0.176 Sum_probs=247.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++| |++++||+|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP 87 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence 7899999999999 999999999999999999998876544 5678999999999999999 899999999999999
Q ss_pred CCCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEE
Q 001396 466 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSC 541 (1086)
Q Consensus 466 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~ 541 (1086)
+... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++|+| ++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 8754 667888999999999998 346999999999999999 6667778888999999999998 99999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEec-ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
+. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..+.
T Consensus 162 ~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~ 229 (313)
T 3odt_A 162 SA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVY 229 (313)
T ss_dssp ET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEE
T ss_pred EC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEE
Confidence 86 67799999 5666677776 44 8999999999987 9999999999999999999999988664 4699
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
+++|+|++ .+++++.||.|++||+.+++....+..|...+.+++++ |+++ +++++.
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~~ 285 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGSS 285 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEET
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEeC
Confidence 99999999 58899999999999999999999999999999999996 5666 667899
Q ss_pred cCccceeeeeecC
Q 001396 701 ENKSEVEKPLFAR 713 (1086)
Q Consensus 701 d~~i~vw~~~~~~ 713 (1086)
|+.+++|++....
T Consensus 286 dg~i~iw~~~~~~ 298 (313)
T 3odt_A 286 DNLVRIFSQEKSR 298 (313)
T ss_dssp TSCEEEEESCGGG
T ss_pred CCcEEEEeCCCCc
Confidence 9999999987543
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=300.85 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=242.1
Q ss_pred eecCCCccEEEEEECCCCCEEE-EEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCC---CCcEEEEEEeC
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD 457 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~l~l~s~~~ 457 (1086)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ ++ ++++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 4678999999999999996555 5555 89999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEeCCCCc-eeEEeecCCcceEEEeecc----cCCccEEEEEEcCCeEEEEEcCCCc-eeEEecCCCC----ceE
Q 001396 458 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT 527 (1086)
Q Consensus 458 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~----~i~ 527 (1086)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5678899999999999999999887 5666655444 788
Q ss_pred EEE----EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec---CCCEEEEEECCCcEEEEE
Q 001396 528 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 528 ~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iwd 600 (1086)
+++ |+|+++++++++. ++.|++||+++++.... ..+. ..|.+++|+| ++.++++++.||.|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 888 7889999999986 67899999999987544 4444 7999999999 999999999999999999
Q ss_pred cCCCeeEEEEc---CCCCCCCCceEEEecCCC-EEEEEECCCcEEEEECCCC-------------------Ceeeecccc
Q 001396 601 MNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGVL 657 (1086)
Q Consensus 601 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~ 657 (1086)
+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+ ..+..+.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 98876654443 112345699999999998 8999999999999998854 245567778
Q ss_pred ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce-eccccCccceeeee
Q 001396 658 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 710 (1086)
Q Consensus 658 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~vw~~~ 710 (1086)
...|.+++|+ |++++++ +++.|+.+++|++.
T Consensus 321 ~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 321 TQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 8888888886 7788888 89999999999976
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.6e-31 Score=297.53 Aligned_cols=287 Identities=9% Similarity=0.055 Sum_probs=242.9
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
....+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCC
Confidence 34568999999999999998 589999999999999988772111 0014479999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEe-cCCCccccceEecc--ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC---------
Q 001396 402 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 468 (1086)
Q Consensus 402 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~--------- 468 (1086)
++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87753 25678 999999999999 77 899999999999999988
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-Cc--eeEEecCCCCceEEEEEec-CCCEEEEEeeC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LG--ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 544 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~--~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~ 544 (1086)
++++..+. |...|.+++|++ ++ +++++.|+.|++||++. .. .......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 88777777 899999999964 43 99999999999999988 44 3345556777999999999 9999999986
Q ss_pred CCCceeEEEEeCCCC------eeeeEEecccc------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 545 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
++.|++|+.+.+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 778999999887 77888887751 124899999999999999999999999999999999988876
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCc-EEEEE
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANENR-IKILE 644 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~ 644 (1086)
+. ...|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence 51 23578888 99999999999998 55444
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.2e-31 Score=304.28 Aligned_cols=278 Identities=21% Similarity=0.312 Sum_probs=241.5
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
..+|...|.|++| +|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| +++
T Consensus 129 ~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~ 184 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DER 184 (435)
T ss_dssp CCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSS
T ss_pred ccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCC
Confidence 3567778999887 677 599999999999999999987765 7789999999999 889
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee---EEeecCCc
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGA 480 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~ 480 (1086)
+|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.+++.. ..+.+|..
T Consensus 185 ~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp EEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred EEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC
Confidence 99999999999999999987655 6789999999999974 4 7999999999999999988776 67889999
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
.|.++++ ++.++++++.||.|++||+++++....+..+...+.++++ +++++++++. ++.|++||+.+++
T Consensus 258 ~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~ 327 (435)
T 1p22_A 258 AVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGA 327 (435)
T ss_dssp CEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCC
T ss_pred cEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCC
Confidence 9999998 4569999999999999999999999999999999999988 4789999886 6789999999999
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe---------eEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.+|
T Consensus 328 ~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l 398 (435)
T 1p22_A 328 CLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQI 398 (435)
T ss_dssp EEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCE
T ss_pred EEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEE
Confidence 999999887 89999998 78899999999999999998766 677777654 46899999 78899
Q ss_pred EEEECCCcEEEEECCCCCee
Q 001396 632 AVIANENRIKILETPESNSV 651 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~~~~~~ 651 (1086)
++++.||.|++||+.+....
T Consensus 399 ~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EECCSSSEEEEEC-------
T ss_pred EEEeCCCEEEEEECCCCCCc
Confidence 99999999999999876443
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.3e-31 Score=301.09 Aligned_cols=281 Identities=19% Similarity=0.237 Sum_probs=243.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
....|+||+++ +||+|. |++|+|||+.+|+..+.. .+.+|...|++|+|+|+|+ +|++|+.|++|++||++++++
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 46789999864 777775 899999999999865532 4567888999999999999 899999999999999999999
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
+..+.+|...+.++++ ++.+|++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999877 346999999999999999887554 4577889999999999999999999986 678
Q ss_pred EEEEeCCCCee----eeEEecccccCCceEEEEEecCCCEE-EE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 551 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 551 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
+++|+..+++. +.....+. ..|.+++|+|++..+ ++ |+.|++|++||+.++++...+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987653 34455555 899999999987654 44 3479999999999999999887654 478999
Q ss_pred EecCCCEEEEEE--CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 624 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 624 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
|+++++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ |+|+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999996 789999999999
Q ss_pred CccceeeeeecC
Q 001396 702 NKSEVEKPLFAR 713 (1086)
Q Consensus 702 ~~i~vw~~~~~~ 713 (1086)
++|++|++....
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999976443
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5e-31 Score=296.81 Aligned_cols=294 Identities=17% Similarity=0.207 Sum_probs=243.1
Q ss_pred CccceeeeeccCCCCceEeeecCC---CceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~spd---g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
.|...++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 355677888999999999999999 57 699999999999999998 444311 1667999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEe--cCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~--s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
.|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| +++++ ++++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999887543 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--CCCCceEEEEEecCCCE----EEEEee
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 543 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~----l~~~~~ 543 (1086)
+.+..+..+. .+.++.+. ...+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998665 56666553 2378999999999999998876554332 23446677777766654 788775
Q ss_pred CCCCceeEEEEeCCCC---eeeeEEecccc---------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 544 SKEGESFLVEWNESEG---AIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
++.|++||+... ..+..+.+|.. +...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 778999999987 56677777661 01169999999999999999999999999999999999887
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
.+. ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus 313 ~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QLD--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCC--CCceEEEECCCCCeEEEEecccccccccc
Confidence 653 46999999999999999999876555543
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.5e-31 Score=300.78 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=242.7
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCCEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 407 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 407 (1086)
....+++++|+...++++|+.||.|+|||+........ ....+.+|...|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35678999999876677789999999999966432210 0112678999999999999 9999999
Q ss_pred EeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe--ecCCcc
Q 001396 408 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 481 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 481 (1086)
|+.||+|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233467899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-cCCCCc-eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
|.+++|++ ++.+|++++.||.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 7789999999999999999998888877 666664 899999999999988832 223889999999987
Q ss_pred ee-eeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCee-EEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 560 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 560 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
+. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .
T Consensus 256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 65 3333321 1367999999999999975 55799999999998874 445544434457999999999988764 5
Q ss_pred CCcEEEEECCCCC
Q 001396 637 ENRIKILETPESN 649 (1086)
Q Consensus 637 dg~i~iw~~~~~~ 649 (1086)
++.+++|++.++.
T Consensus 332 ~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 332 CEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEEEEETTE
T ss_pred ceeEEEEEcCCCc
Confidence 6799999998753
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-32 Score=310.70 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=198.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC--CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.|.++|.+++|+|||++||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 36789999999999999999999999999999987 4443 5779999999999999999 799999999999999
Q ss_pred CCCCc---eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecC-CCCceEEEEEecCCCEE
Q 001396 466 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 466 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~-~~~~i~~~~~s~d~~~l 538 (1086)
+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 99987 6778889999999999965 677999999999999999998773 556666 88999999999999999
Q ss_pred EEEeeCCCCceeEEEEeCC------------------CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 539 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++||
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99986 6779999985 34455555 555 8999999999999999999999999999
Q ss_pred cCCCee----EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 601 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 601 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 5666655 3468999999999999998877666 66654
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-31 Score=293.96 Aligned_cols=251 Identities=18% Similarity=0.320 Sum_probs=205.5
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 462 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~ 462 (1086)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 37789999999999999999999999999999999887531 23367899999999999864 67 799999999999
Q ss_pred EEeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecC---
Q 001396 463 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 534 (1086)
Q Consensus 463 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 534 (1086)
+||+++++ .+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999998876688999999999999999987643 2345667778999999997
Q ss_pred --------------CCEEEEEeeCCCCceeEEEEeCCCC---eeeeEEecccccCCceEEEEEecCC----CEEEEEECC
Q 001396 535 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 593 (1086)
Q Consensus 535 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d 593 (1086)
+++|++++. ++.|++||+..+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888875 778999999765 4556677766 899999999986 789999999
Q ss_pred CcEEEEEcCCC---e-eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 594 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 594 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
++|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999998762 1 11223323 34689999999999999999999999999763
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=1.1e-30 Score=291.53 Aligned_cols=307 Identities=10% Similarity=0.104 Sum_probs=228.2
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 400 (1086)
+.+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~ 68 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASP 68 (351)
T ss_dssp CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCG
T ss_pred ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCC
Confidence 45789999999999999998 5999999999999999987533211 112678999999999999
Q ss_pred -CCCEEEEEeCCCEEEEEEecCCCcc------ccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 401 -DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 401 -dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
|+++|++|+.||.|++||+.+++.. +....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++.
T Consensus 69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTC
T ss_pred CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHH
Confidence 6999999999999999999987431 234467789999999999999 88 899999999999999999887
Q ss_pred eEEee-------------cCCcceEEEeeccc-CCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecCC
Q 001396 472 TYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 472 ~~~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~ 535 (1086)
+..+. .|...+.+++|++. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 65443 58889999999764 1367999999999998888877765 55677888899999999998
Q ss_pred ----CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE----ECCCcEEEEEcCCCeeE
Q 001396 536 ----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 536 ----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~~ 607 (1086)
++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.+
T Consensus 227 ~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 227 GRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp SCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEEE
T ss_pred CCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 78999886 7789999998775544433332 333334444443333333 34455677777777778
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
..+..|. ..|.+++|+|++++|++++.||.|++|++.++..+..+.
T Consensus 300 ~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 300 SEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 8877654 469999999999999999999999999999876655443
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=8.4e-30 Score=280.33 Aligned_cols=277 Identities=19% Similarity=0.253 Sum_probs=237.5
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
..+|+||+++ +||+| .|++|+|||+.++++++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+++++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5779999987 77776 5899999999999876533 4567889999999999999 8999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 346899999999999999887654 4567888999999999999999999986 7789
Q ss_pred EEEeCCCCeee----eEEecccccCCceEEEEEecCCCEEE---EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 552 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 552 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
++||+.+++.. .....+. ..|.++.++|++..++ +++.++.|++||............. ..+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred eEEECCCCcccccceeeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence 99999887543 2333333 7899999999876544 4568899999999998887776544 34789999
Q ss_pred ecCCCEEEEEE--CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 625 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 625 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+|+++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999888765 68999999999999999999999999999996 7899999999999
Q ss_pred ccceeeee
Q 001396 703 KSEVEKPL 710 (1086)
Q Consensus 703 ~i~vw~~~ 710 (1086)
+|++||+.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999975
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.8e-30 Score=293.85 Aligned_cols=284 Identities=15% Similarity=0.160 Sum_probs=242.5
Q ss_pred cCCCcc--EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 387 RDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 387 ~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 355544 55566665 56888889999999999998765422 224889999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
|+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||++ .......+..+...|.+++|+|+++++++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998 34699999999999999999 45567788889999999999999999999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+ ..+.
T Consensus 238 ----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~ 307 (401)
T 4aez_A 238 ----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVT 307 (401)
T ss_dssp ----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEE
T ss_pred ----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEE
Confidence 6789999999999998888877 89999999998765555 44 6999999999999999888644 3589
Q ss_pred eEEEecCCCEEEEEE--CCCcEEEEECCCCCeee--eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 621 RICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++++ |++++++
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~ 365 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRILS 365 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEEE
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEEE
Confidence 999999999999954 89999999999865443 466888889888886 7889999
Q ss_pred eccccCccceeeeeec
Q 001396 697 SVEAENKSEVEKPLFA 712 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~ 712 (1086)
+++.|+.+++|++...
T Consensus 366 s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 366 TAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSEEEEEECCC-
T ss_pred EEeCCCcEEEEECCCC
Confidence 9999999999998643
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.3e-30 Score=291.47 Aligned_cols=259 Identities=13% Similarity=0.150 Sum_probs=216.3
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC--ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
+++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+.. +.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEEE
Confidence 4567899999999999999998 5899999999999999843 33322 778999999999
Q ss_pred ECCC--CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--e
Q 001396 398 WSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--R 471 (1086)
Q Consensus 398 ~spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~--~ 471 (1086)
|+|+ +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 999999999999999999987621 23357789999999999999 88 89999999999999999874 3
Q ss_pred eEEeecCCcceEEEeecccC-----------CccEEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecC--
Q 001396 472 TYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN-- 534 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d-- 534 (1086)
...+.+|...|.+++|++.. ++.+|++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999997642 578999999999999999987653 3466778899999999999
Q ss_pred -CCEEEEEeeCCCCceeEEEEeCCCCeee--eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 535 -GRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 535 -~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+++|++++. ++.|++||+.++... ........+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 899999886 678999999987422 1222222234889999999999999999999999999998543
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.3e-30 Score=300.13 Aligned_cols=254 Identities=14% Similarity=0.226 Sum_probs=208.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------cccceEecccc------------ccEeEEEecCCC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC 447 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~v~~s~d~ 447 (1086)
.|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. .+....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999998762 11234677898 889999999998
Q ss_pred --CcEEEEEEeCCCcEEEEeCCCCcee---------------------------------------EE-eecCCcceEEE
Q 001396 448 --KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSL 485 (1086)
Q Consensus 448 --~~l~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~ 485 (1086)
. .+++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998765432 12 36799999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEE--------ecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeC
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+|++ ++.+|+++ .|+.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9965 67799998 899999999985443332 45778899999999999 99999986 678999999
Q ss_pred CCCee----eeEEecccc---------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCC----
Q 001396 557 SEGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE---- 618 (1086)
Q Consensus 557 ~~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 618 (1086)
++++. +..+.++.. +...|.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 677877660 0128999999999999999999 9999999997 888888876643111
Q ss_pred ---------CceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 619 ---------NPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 619 ---------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-30 Score=291.09 Aligned_cols=256 Identities=17% Similarity=0.298 Sum_probs=218.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~i 463 (1086)
+.+|...|.+++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 1233367899999999999987 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEec------
Q 001396 464 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 533 (1086)
Q Consensus 464 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 533 (1086)
||+.+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+.... ....+..+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999776437899999999999999998874 4456678888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCCe----eeeEEecccccCCceEEEEEecC---CCEEEEEECCCcEEEE
Q 001396 534 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 599 (1086)
Q Consensus 534 -------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 599 (1086)
++.++++++. ++.|++||++++. ....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 6679999998764 445566666 89999999999 8999999999999999
Q ss_pred EcCCCe---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 600 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 600 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++......
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 999874 2333333334557899999999999999999999999999865433
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=8e-30 Score=293.53 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=239.5
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987655 67899999999999 677 8999999999999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee---EEecCCCCceEEEEEecCCCEEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+.+.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 349999999999999999987765 567788889999998 7889999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
++.|++||+.+++.+..+.+|. ..|.++.++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence 7789999999999999999887 889999884 6799999999999999999999999988664 4588888
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCC---------eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 624 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. +..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78899999999999999987655 677788888888777663 677
Q ss_pred ceeccccCccceeeeeecC
Q 001396 695 EISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~~~~ 713 (1086)
+++++.||.|++|++....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEECCSSSEEEEEC-----
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 9999999999999987543
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=287.54 Aligned_cols=290 Identities=17% Similarity=0.148 Sum_probs=239.1
Q ss_pred ecCCCccEEEEEECCC---CCEEEEEeCCCEEEEEEecC-CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|.+.|.+++|+|+ |++||+|+.||.|+|||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 44331 35778999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999777788999999999999999999998888777665 455555554 466666
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE----EEEEECCCcEEEEEcCCC---eeEEEEcCCC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 614 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 614 (1086)
+. ++.+.+|++............ .....+.++.+.++... +++++.||.|++||+... .....+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhccc-cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 667999999876543332221 12355667777666554 999999999999999987 4556665543
Q ss_pred CC----------CCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeee
Q 001396 615 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684 (1086)
Q Consensus 615 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 684 (1086)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 158999999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCcccceeccccCccceeeee
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+++++++++.|+..+.|+..
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 788999999999877777644
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-29 Score=282.41 Aligned_cols=285 Identities=10% Similarity=0.000 Sum_probs=240.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
..+|.+.|.+++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5689999999999999999999999999999999987632223356689999999999999872 378899999999999
Q ss_pred C-CCCceeEEeec--CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC---------CceeEEecCCCCceEEEEEec
Q 001396 466 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 466 ~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 533 (1086)
+ .+++. ..+.+ |...|.+++|++ +.+|++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999976 57999999999999999987 55555555 777899999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCC-Ceee--eEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCC-----
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESE-GAIK--RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 604 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 604 (1086)
++ +++++. ++.|++||+++ +... .....+. ..+.+++|+| +++++++++.||.|++|+++..
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 67899999988 5432 2333334 7899999999 9999999999999999999887
Q ss_pred -eeEEEEcCCCC-------CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccc-ccceeeeEEccCCCceec
Q 001396 605 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 675 (1086)
Q Consensus 605 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~ 675 (1086)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776533 336899999999999999999999999999999999999888 88887776 2
Q ss_pred cccCCeeeecCCCCCCcccceeccccCc-cceeee
Q 001396 676 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 709 (1086)
Q Consensus 676 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~vw~~ 709 (1086)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5788999999998 766663
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.2e-29 Score=280.97 Aligned_cols=294 Identities=11% Similarity=0.121 Sum_probs=221.5
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-ccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 461 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i 461 (1086)
++.+|.+.|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999976432 33446779999999999999 578 89999999999
Q ss_pred EEEeCCCC---------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-------------
Q 001396 462 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------------- 519 (1086)
Q Consensus 462 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------------- 519 (1086)
++||+.++ +.+..+.+|...|.+++|++..++.+|++++.||.|++||+++.+....+
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 55788889999999999977533789999999999999999887644322
Q ss_pred cCCCCceEEEEEecC---CCEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCC----CEEEEE
Q 001396 520 DAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 590 (1086)
Q Consensus 520 ~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 590 (1086)
..+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|. ..|.+++|+|++ ++|+++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 145668999999997 899999886 67788888777765 55566666 899999999998 799999
Q ss_pred ECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE----ECCCcEEEEECCCCCeeeeccccccceeeeEE
Q 001396 591 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 666 (1086)
Q Consensus 591 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 666 (1086)
+.||.|++||+.++......... .........++....++.+ .....+.+|+......+..+.+|...|.+++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 99999999999876554433222 1122333334433333333 33445566666666778888899999999999
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
+ |+++++++++.|+.|++|++..
T Consensus 315 s----------------------~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 315 N----------------------LTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp C----------------------SSSCCEEEEETTSCEEEEEECT
T ss_pred c----------------------CCCCEEEEecCCCcEEEEecCc
Confidence 6 7788999999999999999874
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=285.22 Aligned_cols=300 Identities=12% Similarity=0.011 Sum_probs=235.0
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCc---eeeeeeeeeeecccc-----------------------------
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC----------------------------- 377 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~----------------------------- 377 (1086)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccccc
Confidence 799999999998 46655 46899999999998 4432 221100
Q ss_pred -----------ceeeeeeeecCCCccEEEEEECCCCCEE-EEEeCCCEEEEEEec--CCCccccceEeccccccEeEEEe
Q 001396 378 -----------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAF 443 (1086)
Q Consensus 378 -----------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~v~~ 443 (1086)
..........+|...|.+++|+|+|++| |+|+.||.|+|||+. +++.+.... ...|...|.+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISI 157 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEE
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEE
Confidence 0000111234677789999999999996 889999999999999 777665321 1367789999999
Q ss_pred cCCCCcEEEEEEeCCCcEEEEeCCCCceeE----EeecCCcceEEEeeccc-CCccEEEEEEcCCeEEEEEcCCCceeEE
Q 001396 444 SAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD 518 (1086)
Q Consensus 444 s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 518 (1086)
+|+++ +|++++.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.++.....
T Consensus 158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 99999 89999999999999999887654 78899999999999774 2277999999999999999999888776
Q ss_pred -ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc----------------------ccCCce
Q 001396 519 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSV 575 (1086)
Q Consensus 519 -~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v 575 (1086)
+..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....|
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 55788999999999 9999999986 7789999999999888886431 123578
Q ss_pred EEEEEecCCCEEEEEE-CCCcEEEEEc--CCC---eeEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCcEEEE
Q 001396 576 SVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKIL 643 (1086)
Q Consensus 576 ~~~~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw 643 (1086)
..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 9999999999999998 8999999999 565 666677655 35899999996533333332 4557888
Q ss_pred ECCC
Q 001396 644 ETPE 647 (1086)
Q Consensus 644 ~~~~ 647 (1086)
.+..
T Consensus 388 ~~~~ 391 (450)
T 2vdu_B 388 EYNL 391 (450)
T ss_dssp EEET
T ss_pred EEEc
Confidence 7653
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=7.3e-28 Score=273.39 Aligned_cols=280 Identities=11% Similarity=0.102 Sum_probs=229.2
Q ss_pred ceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE-EEEeCCCEEEEEEe
Q 001396 341 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY 419 (1086)
Q Consensus 341 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 419 (1086)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35899999999999999999987764 4445 458999999999987 56678999999999
Q ss_pred cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE-EE
Q 001396 420 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS 498 (1086)
Q Consensus 420 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 498 (1086)
.+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9987655 344443 8999999999994 3456667899999999999998888754 4678899854 56666 78
Q ss_pred EEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEE
Q 001396 499 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 578 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 578 (1086)
++.++.|++||+.+++....+..+ ..+..++|+|+++.++..+. .++.|++||+.+++.+..+..+ ..+.++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~ 205 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI 205 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence 888999999999998887777654 45689999999998865432 2678999999999888777643 578999
Q ss_pred EEecCCCEEEEEE---CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCcEEEEECCCCCeeeec
Q 001396 579 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 579 ~~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
+|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999999999987 68999999999999988887653 36889999999988 56678999999999998887776
Q ss_pred ccccc
Q 001396 655 GVLSD 659 (1086)
Q Consensus 655 ~~~~~ 659 (1086)
..+..
T Consensus 283 ~~~~~ 287 (391)
T 1l0q_A 283 AVGKN 287 (391)
T ss_dssp ECSSS
T ss_pred ECCcC
Confidence 65544
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.8e-29 Score=276.39 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=217.0
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
.++++..|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 4456689999999999999998 588888765 789999887665431 11257889999
Q ss_pred CCCCEEE-EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeec
Q 001396 400 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 477 (1086)
Q Consensus 400 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 477 (1086)
+++.+++ +++.|++|+|||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987665 343 66799999999864 33333 789999999998 77777665
Q ss_pred CCcceEEEeecccCCccEEEE--EEcCCeEEEEEcCCCc----------------eeEEecCCCCceEEEEEecCCCEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 334445544 35555 5899999999998765 2677889999999999999999999
Q ss_pred EEeeCCCCcee-EEEEeCCCCeeeeEEe-c-ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeE--EEE----
Q 001396 540 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTI---- 610 (1086)
Q Consensus 540 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~---- 610 (1086)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+... ..+
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 777 9999999999999998 5 66 89999999999999999999999999999765321 111
Q ss_pred --------------cCC-CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 611 --------------DAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 611 --------------~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
... ........++|+++++.+++++.||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000 11122467999999999999999999999987643
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.5e-28 Score=279.89 Aligned_cols=285 Identities=13% Similarity=0.150 Sum_probs=233.8
Q ss_pred ccEEEEEECCCCCEEE-EEeCCCEEEEEEecCCC-ccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCC
Q 001396 391 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 391 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
.....++++|+...++ +++.+|.|+||++.... .......+.+|.+.|.+++|+| +++ +|++|+.|++|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 57889999999996543 2233445779999999999999 787 89999999999999999
Q ss_pred CC-------ceeEEeecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCceEEEEEecCCCE
Q 001396 468 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 468 ~~-------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~ 537 (1086)
++ +++..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+++....+ ..+...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999965 44 59999999999999999999988888 788999999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEE-ecccccCCceEEEEEecCCCEEEEE---ECCCcEEEEEcCCCee-EEEEcC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 612 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~ 612 (1086)
|++++. ++.|++||+++++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999986 778999999999999888 6666 2348999999999999998 7999999999998764 333332
Q ss_pred CCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCe-eeecccc--ccceeeeEEccCCCceeccccCCeeeecCCC
Q 001396 613 GGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDP 688 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~ 688 (1086)
. +...+.+++|+|+++++++++ .|+.|++|++.++.. +..+..+ ...+.+++|+
T Consensus 265 ~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 2 234589999999999997555 699999999998874 4444443 4778888886
Q ss_pred CCCcccceeccccCccceeeee
Q 001396 689 KEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 689 s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|++.++++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 56666665 45689999976
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.5e-27 Score=249.69 Aligned_cols=294 Identities=14% Similarity=0.125 Sum_probs=207.5
Q ss_pred cEeEEEec-CCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 437 NVNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 437 ~v~~v~~s-~d~~~l~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
.+.++-|- +..+.+.+++++ ..+|++|+..++ ++++++.+|..+|..+.+.|+.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 35566663 445566788888 568999999999 8999999999999999997754332222111
Q ss_pred CceeEEecCCCCceEEEEEecC----CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEE
Q 001396 513 LGARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 588 (1086)
Q Consensus 513 ~~~~~~~~~~~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 588 (1086)
..+...|.+++++|| ++.+++++. .+.+|++.+++ .+.
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g~-------------------------lv~ 149 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKRR-------------------------LVS 149 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTTE-------------------------EEE
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCCc-------------------------EEE
Confidence 234457889999999 999998763 36667543333 333
Q ss_pred EEE--CCCcEEEEEc-CCCeeEEEEcCCCCCCCCceEEEec---CCCEEEEEECCCcEEEEECCCCCeeeecccccccee
Q 001396 589 AAG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR 662 (1086)
Q Consensus 589 ~~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 662 (1086)
+++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+..+.+|..
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--- 224 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--- 224 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----
T ss_pred ecccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc---
Confidence 322 4777777777 34666666666644 578899999 789999999999999999999988877754322
Q ss_pred eeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCce
Q 001396 663 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 742 (1086)
Q Consensus 663 ~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 742 (1086)
+...+.+++|+|+|+.
T Consensus 225 ----------------------------------------------------------------~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 225 ----------------------------------------------------------------YQASVCHKAYSEMGLL 240 (356)
T ss_dssp ------------------------------------------------------------------CCCEEEEEEETTEE
T ss_pred ----------------------------------------------------------------ceeeeEEEEECCCCCE
Confidence 1224667889999887
Q ss_pred EEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEE
Q 001396 743 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISL 821 (1086)
Q Consensus 743 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~i 821 (1086)
+++++.+.. +| .+++++ |++|++
T Consensus 241 lvs~s~~~~--~w------------------------------------------------------~laSGs~D~tIkl 264 (356)
T 2w18_A 241 FIVLSHPCA--KE------------------------------------------------------SESLRSPVFQLIV 264 (356)
T ss_dssp EEEEC--------------------------------------------------------------------CCEEEEE
T ss_pred EEEeccCCC--cc------------------------------------------------------eeeccCCCcEEEE
Confidence 777664311 11 345665 688999
Q ss_pred EEccCceEEEEE-----cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeE-EEEEeCCCCEE
Q 001396 822 YIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNIL 895 (1086)
Q Consensus 822 wd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~-~l~~spdg~~l 895 (1086)
||..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 999999887765 356555544444 367999999999999999999999999999988765 58999999999
Q ss_pred EEEeCCCcEEEEEC
Q 001396 896 VSSGGDAQIFVWDV 909 (1086)
Q Consensus 896 ~s~s~dg~i~iwd~ 909 (1086)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4e-27 Score=267.35 Aligned_cols=328 Identities=11% Similarity=0.130 Sum_probs=254.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE-EEEEcCCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999999999999987754 78899854 66665 677799999999999988877776655 89999
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEE-EEEECCCcEEEEEcCCCeeEE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 608 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 608 (1086)
+|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999876653 2578999999999988887754 468999999999988 577789999999999999988
Q ss_pred EEcCCCCCCCCceEEEecCCCEE-EEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCC
Q 001396 609 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 687 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 687 (1086)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778899999987542211100
Q ss_pred CCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcc
Q 001396 688 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 767 (1086)
Q Consensus 688 ~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 767 (1086)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe----CCeEEEEEccCceEEEEEcCCCCCeEEE
Q 001396 768 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 843 (1086)
Q Consensus 768 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l 843 (1086)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122355677778877777664 5789999999999888887654 57899
Q ss_pred EEcCCCCCEE-EEEeCCCeEEEEEcCCceeEEEeccccCCeE---EEE------------EeCCC----------CEEEE
Q 001396 844 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLV------------FSDAL----------NILVS 897 (1086)
Q Consensus 844 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~v~---~l~------------~spdg----------~~l~s 897 (1086)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |+.+. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999988877655421 123 32221 23556
Q ss_pred EeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 898 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 898 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
.+.|..+++|++..+.... . .-....|+++|.|.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6678899999998765211 0 1224679999998876
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.6e-29 Score=305.75 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=213.0
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
..++.+|.+.|++++|+|+|++ |++|+.||+|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 4568999999999999999985 89999999999999985432211 12778999999999999
Q ss_pred C--CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--eeEE
Q 001396 401 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS 474 (1086)
Q Consensus 401 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~--~~~~ 474 (1086)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ .+++|+.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 223357789999999999999 88 89999999999999998873 4567
Q ss_pred eecCCcceEEEeecccC-----------CccEEEEEEcCCeEEEEEcCCCc----eeEEecCCCCceEEEEEecC---CC
Q 001396 475 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR 536 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d---~~ 536 (1086)
+.+|...|.+++|++.. ++.++++|+.||.|++||+++.. ....+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 78899999999997642 57899999999999999998874 44567788999999999999 89
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeee--eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
++++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 678999999886421 1112222234889999999999999999999999999998643
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.5e-28 Score=278.91 Aligned_cols=255 Identities=16% Similarity=0.253 Sum_probs=213.9
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC----------ceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----------QKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
..+.+|.+.|++++|+|++..+||+|+.||.|+|||+.+. ..+. .+.+|..
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~~ 182 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQK 182 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCSS
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCCC
Confidence 4556899999999999985457999999999999999862 2222 2678999
Q ss_pred cEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 392 SVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 392 ~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
.|.+++|+|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||+
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDT 261 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEET
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEEC
Confidence 999999999998 9999999999999999885432 223456789999999999995444 8999999999999999
Q ss_pred CCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEecCCCCceEEEEEecCCC-EEEEE
Q 001396 467 VTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSC 541 (1086)
Q Consensus 467 ~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~ 541 (1086)
.++ +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ +++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp TCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 987 5778888999999999997642 23799999999999999998 456778888999999999999996 57777
Q ss_pred eeCCCCceeEEEEeCCC--------------CeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCC
Q 001396 542 GTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 604 (1086)
+. ++.|++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 341 ~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 341 GT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp ET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 65 67899999987 24455555555 8899999999999 8899999999999999754
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=7.9e-27 Score=268.96 Aligned_cols=355 Identities=14% Similarity=0.090 Sum_probs=261.6
Q ss_pred CCccEEEEEECCCCCEEEEEeCC-CEEEEEEecCCCccccceEeccccccEeEEE---ecCCCCcEEEE-----------
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI----------- 453 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~---~s~d~~~l~l~----------- 453 (1086)
....|..+.++|....++..... ...+++.. .....+..++ |+|+++.++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443211 11222221 1223455666 77776643222
Q ss_pred -EEeCCC--cEEEEeCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-----EecCCC
Q 001396 454 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 523 (1086)
Q Consensus 454 -s~~~d~--~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-----~~~~~~ 523 (1086)
+++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 223344 4444554445 5566666554 455888865 66788888889999999999888776 344677
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcC
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 602 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~ 602 (1086)
..+.+++|+++++++++++. ++.|++||+.+++.+..+..+. ..+.+++|+|+++++++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 79999999999999999875 6789999999999998888766 8899999999999886655 79999999999
Q ss_pred CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE--------CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 603 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 603 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888876543 378999999999999887 3566667766543111100
Q ss_pred ccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEE
Q 001396 675 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 754 (1086)
Q Consensus 675 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 754 (1086)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-e-CCeEEEEEccCceEEEE
Q 001396 755 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 755 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~-dg~i~iwd~~~~~~~~~ 832 (1086)
.+...+.+++|+|+++.+++. + ++.|++||+.+++.+..
T Consensus 300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 012245567888888765444 3 68899999999888887
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeC---------------CCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEE
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 897 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 897 (1086)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEE
Confidence 76 677899999999 8888888876 579999999999999888864 57999999999999998
Q ss_pred EeC-CCcEEEEECCC
Q 001396 898 SGG-DAQIFVWDVDG 911 (1086)
Q Consensus 898 ~s~-dg~i~iwd~~~ 911 (1086)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-29 Score=305.46 Aligned_cols=254 Identities=17% Similarity=0.299 Sum_probs=215.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~i 463 (1086)
+.+|.+.|.+++|+|+|++||+|+.||+|+|||+.++.. .....+.+|.++|++++|+++ ++ ++++|+.||+|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 779999999999999999999999999999999985432 233467899999999999988 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEec------
Q 001396 464 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 533 (1086)
Q Consensus 464 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 533 (1086)
||+.+++ .+..+.+|...|.+++|++..++..+++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999776447899999999999999998873 4556678888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCC----eeeeEEecccccCCceEEEEEecC---CCEEEEEECCCcEEEE
Q 001396 534 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 599 (1086)
Q Consensus 534 -------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 599 (1086)
+++.+++++. ++.|++||++++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 5899999986 678999999877 5556667766 89999999999 8999999999999999
Q ss_pred EcCCCeeE---EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 600 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 600 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
|+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99986421 112222344568999999999999999999999999998653
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.8e-27 Score=270.78 Aligned_cols=300 Identities=12% Similarity=0.047 Sum_probs=229.6
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccce--EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
..+.+++|+|++.++++++.++.|++||+.+++..+... .+.+|...|.+++|+++++ ++++++.|+.|++||+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888889999999999987654211 2457889999999999998 899999999999999999
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEE-EEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC-
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 546 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~- 546 (1086)
++.+..+..|...+.+++|++ ++..++ +++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999965 556664 555899999999998877766655 446899999999999998875321
Q ss_pred ---CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEE-EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 547 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 547 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.++ +++.++.|++||+.+++....+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998777653 33 5788999999998665 5689999999999999988888643 347899
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 623 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+|+|+++++++++.+.. .....++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999988876320 01122344445555
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeec-cceeEEeecc
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 758 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~ 758 (1086)
.+++||....+.... + .....+.+++|+|+|+.+++++. ++.+++|+++
T Consensus 382 ~v~~~d~~~~~~~~~--~-----~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVKEF--W-----EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEE--E-----ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEEEE--e-----cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 555555432111100 0 02345788899999998887765 8999999864
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.6e-27 Score=265.38 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=216.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|...|.+++|||||++||+|+.++ ++|||+.+++... ..+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----SQEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----EEECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----eeecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 567999999999999999999998776 7899998765432 122235888999998884 346778889999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+.+++++..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 677999999854 3 34443 5889999999887 44443333 445566777 66766522
Q ss_pred CCCceeEEEEeCCCCe----------------eeeEEecccccCCceEEEEEecCCCEEEEEECCCc-EEEEEcCCCeeE
Q 001396 545 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 607 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~ 607 (1086)
..++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++|+.|++ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 126789999999875 267778877 99999999999999999999998 999999999999
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee--eeccc-----cccceeeeEEccCCCceeccccCC
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGV-----LSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
..+....+...|.+++|+|++++|++++.|++|++||+...... ..+.. .....+++....... .......
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 309 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGC 309 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCce
Confidence 99873212456999999999999999999999999999865321 11111 001111111000000 0011113
Q ss_pred eeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
.+++ +++++.+++++.||.+++|++...+
T Consensus 310 ~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 310 KIAW----ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 4555 7889999999999999999987543
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=4e-27 Score=270.05 Aligned_cols=255 Identities=16% Similarity=0.310 Sum_probs=214.9
Q ss_pred eeeecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCC-------CccccceEeccccccEeEEEecCCCCcEEEEE
Q 001396 383 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 383 ~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s 454 (1086)
.....+|.+.|.+++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s 199 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLS 199 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEE
Confidence 3346679999999999997 789999999999999999862 112344467899999999999999886 6999
Q ss_pred EeCCCcEEEEeCCCCce-------eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC---ceeEEecCCCC
Q 001396 455 CGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGL 524 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~ 524 (1086)
|+.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..+..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 99999999999988432 4667789999999999764 4579999999999999999987 46667778889
Q ss_pred ceEEEEEecCCC-EEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEc
Q 001396 525 GCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM 601 (1086)
Q Consensus 525 ~i~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~ 601 (1086)
.+.+++|+|++. ++++++. ++.|++||+++ +..+..+..|. ..|.+++|+|+++ .+++++.||.|++||+
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 999999999998 5777765 77899999997 56788888877 8999999999985 5888999999999999
Q ss_pred CC--------------CeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCcEEEEECCCC
Q 001396 602 NK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 648 (1086)
Q Consensus 602 ~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 648 (1086)
.. .+.+.....+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 87 2445555444 44699999999999 9999999999999998753
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-28 Score=270.60 Aligned_cols=272 Identities=10% Similarity=0.053 Sum_probs=214.2
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
...+.+|++ ++++|+.||+|++||+.+++.+... . ...|.+++|+|+ +++++.|+
T Consensus 41 ~~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~ 95 (343)
T 3lrv_A 41 NKSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCN 95 (343)
T ss_dssp CSSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTT
T ss_pred hhhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCC
Confidence 345567786 6999999999999999999877641 1 356778889998 99999999
Q ss_pred EEEEEEec---------CCCccccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEee-cCCc
Q 001396 413 IVQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGA 480 (1086)
Q Consensus 413 ~i~iwd~~---------~~~~~~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~ 480 (1086)
+|++|+.. +++.++. ...+|.+.|.+++|+| +++ ++++++.|++|++||+++++.+.... .|..
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 171 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDV 171 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSC
T ss_pred eEEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCC
Confidence 99999765 3332221 1226778999999999 999 89999999999999999999877664 4556
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-EEecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
.|.+++|++ ++.+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|+|.+|++++. +.|++||+++
T Consensus 172 ~i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~ 244 (343)
T 3lrv_A 172 EYSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRK 244 (343)
T ss_dssp CCCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTS
T ss_pred ceEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCC
Confidence 899999965 7789999999999999999999887 77777 8899999999999999999983 2799999999
Q ss_pred CeeeeEEecccccCCce--EEEEEecCCCEEEEEEC-CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec---CCCEEE
Q 001396 559 GAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLA 632 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~ 632 (1086)
++.+..+..+..+...+ .+++|+|++++|++++. |+.|++|++.+....... ..+..++|++ +...++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMD 318 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeE
Confidence 88766655432222334 36999999999999998 999999999765433332 1245677777 888999
Q ss_pred EEECCCcEEEEECC
Q 001396 633 VIANENRIKILETP 646 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~ 646 (1086)
+++.|+.+.++-..
T Consensus 319 ~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 319 VVCGDGGIAAILKT 332 (343)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEecCCceEEEEec
Confidence 99999999887543
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=9.6e-27 Score=243.72 Aligned_cols=285 Identities=14% Similarity=0.068 Sum_probs=197.1
Q ss_pred ceEeeecC-CCceEEEEEeccCcEEEEecCCC---ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 331 PMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 331 V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
+.++-|-. ..+.+.+.......|++|+..++ +.+++ +.+|+.+|..++|+||..-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence 45555543 34444444444589999999998 66654 556777777777777654433
Q ss_pred EEeC--CCEEEEEEecCC---CccccceEeccccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeC-CCCceeEEeecC
Q 001396 407 VAYS--KHIVQLYAYHGG---SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA-VTGSRTYSFEGH 478 (1086)
Q Consensus 407 s~~~--d~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~-~~~~~~~~~~~h 478 (1086)
...- =..-.|+-+.-. +.+.+...-.+|...|..+ ++++ ++.+++ .|+.|++|++ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 3211 011111111110 1111111123444445443 4554 444433 5899999998 558888888899
Q ss_pred CcceEEEeecc-cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC---ceEEEEEecCCCEEEEEee--------CCC
Q 001396 479 GAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGT--------SKE 546 (1086)
Q Consensus 479 ~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d~~~l~~~~~--------~~~ 546 (1086)
...++.++|++ ..++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|+++++++. ++.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999988 66789999999999999999999999888876443 5778899999999876542 234
Q ss_pred CceeEEEEeCCCCeeeeEEe-----cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 547 GESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
.++.|++||..+++.+..+. +|. ..+.+..+ ++..+++++.|++|+|||+.+++++.++..|.. ..+..
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~---~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs~ 331 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQA---GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWSF 331 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCC---CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCCE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCc---ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEEE
Confidence 58899999999999887653 333 44444444 378899999999999999999999999986643 12446
Q ss_pred EEEecCCCEEEEEECCCcEEEEEC
Q 001396 622 ICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
++|+|||++|++|+.|++|+|||.
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 899999999999999999999985
No 125
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-27 Score=273.11 Aligned_cols=265 Identities=15% Similarity=0.096 Sum_probs=219.2
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEec--------------------------------------
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 432 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------- 432 (1086)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899999999977666 57789999999988211111222
Q ss_pred ----------------cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC--CCceeEEee--cCCcceEEEeecccCC
Q 001396 433 ----------------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKEN 492 (1086)
Q Consensus 433 ----------------~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~~ 492 (1086)
+|.+.|.+++|+|+++. ++++++.|+.|++||+. +++.+..+. .|...|.+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 34457999999999993 24899999999999999 898888886 5678999999955 7
Q ss_pred ccEEEEEEcCCeEEEEEcCCCceeE----EecCCCCceEEEEEecC---CCEEEEEeeCCCCceeEEEEeCCCCeeeeE-
Q 001396 493 IHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT- 564 (1086)
Q Consensus 493 ~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~- 564 (1086)
+.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 7899999999999999998776543 56678889999999999 999999986 67799999999988877
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----------------------CCCCCCce
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENPR 621 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~ 621 (1086)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+..
T Consensus 237 ~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 237 LFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 44666 899999999 9999999999999999999999988887632 11235789
Q ss_pred EEEecCCCEEEEEE-CCCcEEEEEC--CCC---CeeeeccccccceeeeEEcc
Q 001396 622 ICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP 668 (1086)
Q Consensus 622 v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~v~~~~~~p 668 (1086)
++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..+.+++++|
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 99999999999999 8999999999 555 556666666 7788888875
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=265.29 Aligned_cols=279 Identities=9% Similarity=0.055 Sum_probs=214.1
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
..+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 42 ~~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~-------- 104 (343)
T 3lrv_A 42 KSMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN-------- 104 (343)
T ss_dssp SSSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT--------
T ss_pred hhhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC--------
Confidence 34556777 89999999999999999999988886 566777877654 99999999999998643
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe-cccccCCceEEEEEec--CCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~ 597 (1086)
.+.+||..+++.+..+. +|. ..|.+++|+| +++++++++.||+|+
T Consensus 105 -----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 105 -----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp -----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEE
T ss_pred -----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 37788988888776665 443 7899999999 999999999999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee-eeccccccceeeeEEccCCCceecc
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~ 676 (1086)
+||+.+++.......+.. ..+.+++|+|++.++++|+.||.|++||+.++... ..+..
T Consensus 153 ~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-------------------- 211 (343)
T 3lrv_A 153 FQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-------------------- 211 (343)
T ss_dssp EEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--------------------
T ss_pred EEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--------------------
Confidence 999999998766644322 35899999999999999999999999998865322 11100
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC-
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP- 835 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~- 835 (1086)
+|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..
T Consensus 212 -------------------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 212 -------------------------------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp -------------------------------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCC
T ss_pred -------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeeccc
Confidence 155667777777777777777766777777776655444332
Q ss_pred --CCCCe--EEEEEcCCCCCEEEEEeC-CCeEEEEEcCCceeEEEeccccCCeEEEEEeC---CCCEEEEEeCCCcEEEE
Q 001396 836 --PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVW 907 (1086)
Q Consensus 836 --~~~~i--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp---dg~~l~s~s~dg~i~iw 907 (1086)
|...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +.+.+++++.||.+.++
T Consensus 255 ~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 255 TIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp BC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred ccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 22333 4799999 8999999998 999999999766443332 5678889998 88999999999999988
Q ss_pred ECCC
Q 001396 908 DVDG 911 (1086)
Q Consensus 908 d~~~ 911 (1086)
-...
T Consensus 330 ~~~~ 333 (343)
T 3lrv_A 330 LKTN 333 (343)
T ss_dssp EECS
T ss_pred EecC
Confidence 6554
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.2e-26 Score=269.17 Aligned_cols=342 Identities=10% Similarity=0.091 Sum_probs=257.5
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc--CCCeeE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 607 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 607 (1086)
+++|++..++++.. ++.|.+||..+++++.++.... .+..++|+|+++++++++.|+.|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888887777764 6789999999999999988544 3889999999999999999999999999 889988
Q ss_pred EEEcCCCCCCCCceEEEec----CCCEEEEEEC-CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCee
Q 001396 608 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
..+.... .+..++|+| ||+++++++. +++|.+||..+++.+..+..+...+....+.
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 8887432 368999999 9999999885 8999999999887776554221100000000
Q ss_pred eecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEE-eeccceeEEeeccCCc
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA-LASNGVHLMWRWPRND 761 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~-~~~dg~i~vw~~~~~~ 761 (1086)
....+.++.+++++..+++ ...++.|.+|++....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 1236788999998766554 4567899998875432
Q ss_pred cccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcC----
Q 001396 762 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 835 (1086)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~---- 835 (1086)
. +....+ .+...+..++|+|||++++++. +++|.+||+.+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110001 1344567899999999887765 68999999999999988864
Q ss_pred CCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------ceeEEEeccccCCeEEEEEeCCCCEEEEEe-------C
Q 001396 836 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 900 (1086)
Q Consensus 836 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~v~~l~~spdg~~l~s~s-------~ 900 (1086)
|.+....+ ++|+++.+++++. .|++|.+||+.+ .+++.++.+|.+.+..++|+|||++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 54444443 5774577888876 689999999998 899999999999899999999999999987 2
Q ss_pred CCcEEEEECCCCceeeeeeeecc--CCCccCCCCceEEEEecCCCEEEEE------eCCeEEEEEcCCccceeccc
Q 001396 901 DAQIFVWDVDGWGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 968 (1086)
Q Consensus 901 dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~ 968 (1086)
+++|.|||+.+++... ..+... .+.......+..++|+|||+.|.++ .++.|.|||.++++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999877441 122110 0001111368999999999999874 26899999999999887644
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=5.8e-26 Score=265.63 Aligned_cols=346 Identities=11% Similarity=0.091 Sum_probs=246.9
Q ss_pred eecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeec-CCCccEEEEEECCCCCEEEEEeCCCE
Q 001396 335 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 413 (1086)
Q Consensus 335 ~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~ 413 (1086)
+|+|+++ ++++++.|++|.+||..+++++.. +. ++. +..++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899996 789999999999999999998765 33 343 889999999999999999999
Q ss_pred EEEEEe--cCCCccccceEeccccccEeEEEecC----CCCcEEEEEEe-CCCcEEEEeCCCCceeEEeecCCcceEEEe
Q 001396 414 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 414 i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~----d~~~l~l~s~~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 486 (1086)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776554 444 445689999999 999 566665 589999999999999888764322111111
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee--E
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 564 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 564 (1086)
++ +...+..+.++|++..+++... +++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence 11 1124667788887777665542 36678889888765443 2
Q ss_pred EecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE-EecC-CCEEEEEE-CCCcE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 640 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 640 (1086)
+. +. ..+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 32 22 5678899999999887665 68999999999999998887432111112233 4677 55556554 57899
Q ss_pred EEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccc
Q 001396 641 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 720 (1086)
Q Consensus 641 ~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 720 (1086)
.+|+..+.. |..
T Consensus 396 ~v~d~~~~~-------~~~------------------------------------------------------------- 407 (543)
T 1nir_A 396 SLIGTDPKN-------HPQ------------------------------------------------------------- 407 (543)
T ss_dssp EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence 999987520 000
Q ss_pred ccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCee
Q 001396 721 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 800 (1086)
Q Consensus 721 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 800 (1086)
+...+ +.+.. .+...+.
T Consensus 408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~ 424 (543)
T 1nir_A 408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL 424 (543)
T ss_dssp ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence 00000 00000 1334456
Q ss_pred EEEeecCCCEEEEEe--------CCeEEEEEccCceEE-EEE--------cCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001396 801 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D 858 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~ 858 (1086)
.++++||+++|+++. +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 688889998888876 468999999988876 443 35577899999999 788877653 4
Q ss_pred CCeEEEEEcCCceeEEEecccc
Q 001396 859 DSTILIYNARSSEVISKLEGHS 880 (1086)
Q Consensus 859 dg~v~iwd~~~~~~~~~l~~h~ 880 (1086)
|+.|.|||..+++++.+++.+.
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCTT
T ss_pred CCeEEEEECCCceEEEeecCCC
Confidence 7999999999999999988643
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=8.7e-28 Score=271.62 Aligned_cols=275 Identities=7% Similarity=-0.015 Sum_probs=181.0
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 400 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 400 (1086)
....|...+....++++++ +||+|+.|++|+|||+.+++......+ ..+.||.+.|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~ 148 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVY 148 (393)
T ss_dssp ECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEcccc
Confidence 3445666667777778886 699999999999999999876543211 23789999999999998
Q ss_pred ------CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 401 ------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 401 ------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++....
T Consensus 149 ~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 149 SADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp CTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC----
T ss_pred ccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccc
Confidence 89999999999999999998876544 46689999999999999865 799999999999999999988766
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEe-cCCCEEEEEeeCCCCceeEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~i 553 (1086)
...+.......++.... ...........+...+.++.|+ +|++.+++++. ++.+++
T Consensus 225 ~~~~~~~~~~~~~s~~~-------------------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~v 281 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNT-------------------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLR 281 (393)
T ss_dssp ------CSCCCSEEEES-------------------GGGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEE
T ss_pred ccccCCcccceEEeccc-------------------ccceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEE
Confidence 65444333222221111 1111111223566678888887 79999999876 778999
Q ss_pred EeCCCCeeeeEEecccccCCceEE------------------EEEec--CCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSV------------------VHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~------------------~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
||+.++.....+..+. ..+.. ..|+| ++.++++|+.||.|++||+.+++....+..+
T Consensus 282 wd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~ 358 (393)
T 4gq1_A 282 WNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL 358 (393)
T ss_dssp EEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred EECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 9999887766665544 22222 22333 2335666889999999999999888777655
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 614 GGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 359 ~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 359 G--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp S--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred C--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 4 3699999999999999998776 555554
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=4.2e-27 Score=265.99 Aligned_cols=324 Identities=13% Similarity=0.079 Sum_probs=203.6
Q ss_pred eecCCCceEEEEEeccCcEEEEecCCCce-----eeeeeeeeeecccccee-----eeeeeecCCCccEEEEEECCCCCE
Q 001396 335 DFHPVQHTLLLVGTNVGDTGLWDVNSGQK-----LFIRNFKVWDIGACSML-----FKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 335 ~~spdg~~lla~gs~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
..+|++..++++|. ++.|.+|+...... ........|........ ........|...+....+++++.+
T Consensus 25 ~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T 4gq1_A 25 SQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLF 103 (393)
T ss_dssp TTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEE
T ss_pred CCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCE
Confidence 33666666666664 68899998643211 11111222221110000 001123345555666666778889
Q ss_pred EEEEeCCCEEEEEEecCCCccc--cceEeccccccEeEEEecC--------CCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~s~--------d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
||+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||+.++.++..
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeee
Confidence 9999999999999999886533 2224679999999999998 777 899999999999999999998888
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
+.+|..+|.+++|+|. +..+|++++.||+|++||+.+++.......+........+++
T Consensus 182 ~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~--------------------- 239 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL--------------------- 239 (393)
T ss_dssp EEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE---------------------
T ss_pred ecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec---------------------
Confidence 8899999999999764 335899999999999999988766554433222111111111
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC----------------CC
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----------------LP 617 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----------------~~ 617 (1086)
+...........+|. ..+.++.|+ ++++.+++++.|+++++||+..++....+..+.. ..
T Consensus 240 ~~~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp ESGGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred ccccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence 111111111223344 778888887 8999999999999999999988776555433211 01
Q ss_pred CCceEEEec--CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 618 ENPRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 618 ~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
......++| ++.++++|+.||.|++||..++........|...|.+++|+ |||++|
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs----------------------pdG~~L 374 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH----------------------QDGSHL 374 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC----------------------TTSSEE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc----------------------CCCCEE
Confidence 122334444 34466778889999999999998888888899999999996 788999
Q ss_pred eeccccCccceeee
Q 001396 696 ISVEAENKSEVEKP 709 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~ 709 (1086)
++++.+| +.+|++
T Consensus 375 A~as~~G-v~lvrL 387 (393)
T 4gq1_A 375 AIATEGS-VLLTRL 387 (393)
T ss_dssp EEEESSE-EEEEEE
T ss_pred EEEeCCC-eEEEEE
Confidence 9887655 555554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.1e-25 Score=255.61 Aligned_cols=306 Identities=9% Similarity=0.033 Sum_probs=241.4
Q ss_pred CCCceEeeecCCCceEEEEEe----ccC----cEEEEec--CCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...|...+|++.|..++++|+ .|| +|+|||+ .+++++.... +.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence 357899999999987788887 357 8999999 9998774322 556777777777
Q ss_pred ECC--------------CCCEEEEEeCC------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC
Q 001396 398 WSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 398 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
+++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677777654 799999998543 33 5678999999999999999 7888887
Q ss_pred CC---cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEE-EEEcCCe--EEEEEcCCCceeEEecCCCCceEEEEE
Q 001396 458 DK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAY 531 (1086)
Q Consensus 458 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~ 531 (1086)
++ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 5667888999999955 677777 6666654 99999988665 456667778999999
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCCeeEE
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLT 608 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~ 608 (1086)
+|||++|++++. .++...|++||+.+++.. .+..+. ..+..++|+|+|++|++++.+ ..|++||+.+++..
T Consensus 275 spdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 275 FPDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp CTTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred CCCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 999999998874 233558999999888643 333333 678899999999999987754 58999999998774
Q ss_pred EEcCCCCCCCCceEEEecCCCEEEEEECCC---cEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 609 TIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
.+..+. .+.+++|+|+|++|++++.++ .|++|++. +.....+..+...|.+++|+|..
T Consensus 349 ~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 349 VLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 343332 588999999999999988877 79999987 55667788899999999999754
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=7.8e-24 Score=261.96 Aligned_cols=303 Identities=13% Similarity=0.073 Sum_probs=214.9
Q ss_pred CCCceEeeecCCCceEEEEEec-cC-----cEEEEecCCCceeeeeeeeeeec-----cccceeeeeeeecCCCccEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDI-----GACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~-dg-----~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
...|.+++|||||++ |++++. |+ .|.+||+.+++............ ...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 347999999999996 777776 88 89999999998654321100000 0000000000000001348899
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCC--ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999882 233 3567888899999999999 677776 56999999999877655
Q ss_pred eecCCcc----------------eEEEeecccCCccEEEEEEcCC---------------------------------eE
Q 001396 475 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI 505 (1086)
Q Consensus 475 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~i 505 (1086)
...+... +.+++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444432 366777 55788899988776 78
Q ss_pred EEEEcCC-CceeEEec--CCCCceEEEEEecCCCEEEEEee-CCCCceeEEEEeCCCCeeeeEEecccccCC---ceEEE
Q 001396 506 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV 578 (1086)
Q Consensus 506 ~vwd~~~-~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~ 578 (1086)
.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||+.+++....+..+. .. .+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence 8999988 76554433 35567899999 99999997764 23346789999999998877776654 12 45688
Q ss_pred EEecCCCEEEEEECCCcEEEEEcC-CCeeEEEEcCCCCCCCCceE-EEecCCCEEEEEEC-CC--cEEEEECC
Q 001396 579 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 646 (1086)
Q Consensus 579 ~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~ 646 (1086)
+|+|||+.+++++.+|.++||.+. ++. ...+..+ ...+..+ .|+|+|+.++..+. ++ .+++|++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999988888999988888775 344 5555443 2346666 59999998765554 44 78888865
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=6.6e-24 Score=241.00 Aligned_cols=306 Identities=13% Similarity=0.115 Sum_probs=228.8
Q ss_pred cccEeEEEecCCCCcEEEEEEe----CCC----cEEEEeC--CCCcee--EEeecCCcceEEEeeccc------------
Q 001396 435 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 490 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~------------ 490 (1086)
...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356788899999886 676776 567 8999999 999987 558899988888776542
Q ss_pred CCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001396 491 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 491 ~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 564 (1086)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 114466666654 7999999975 44556666778999999999999999988532 2468999999998875 4
Q ss_pred EecccccCCceEEEEEecCCCEEE-EEECCCc--EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CC--
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 638 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 638 (1086)
+..+. ..+.+++|+|||++|+ +++.++. |++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5665554 99999998876 344333 245789999999999988876 34
Q ss_pred cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccc
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 718 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~ 718 (1086)
.|++||+.++.... +
T Consensus 292 ~i~~~d~~~~~~~~-l---------------------------------------------------------------- 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-I---------------------------------------------------------------- 306 (415)
T ss_dssp EEEEEETTSSCCEE-C----------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-E----------------------------------------------------------------
Confidence 45555554331100 0
Q ss_pred ccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCC
Q 001396 719 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 798 (1086)
Q Consensus 719 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 798 (1086)
. .+...
T Consensus 307 ------------------------------------------------------------------------~--~~~~~ 312 (415)
T 2hqs_A 307 ------------------------------------------------------------------------T--WEGSQ 312 (415)
T ss_dssp ------------------------------------------------------------------------C--CSSSE
T ss_pred ------------------------------------------------------------------------e--cCCCc
Confidence 0 02234
Q ss_pred eeEEEeecCCCEEEEEe-C---CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCce
Q 001396 799 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE 871 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~ 871 (1086)
+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +.
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence 55677788888777765 2 47999999988774 455454 899999999 899998888777 89999997 56
Q ss_pred eEEEeccccCCeEEEEEeCCCC
Q 001396 872 VISKLEGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 872 ~~~~l~~h~~~v~~l~~spdg~ 893 (1086)
....+.+|.+.|.+++|+|.-.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCCC
T ss_pred cEEEeeCCCCCCcCCccccccc
Confidence 6788899999999999999643
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=6.1e-23 Score=253.97 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=235.5
Q ss_pred cccEeEEEecCCCCcEEEEEEeC-CC-----cEEEEeCCCCceeEEeecCCc------------------------ceEE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGA------------------------PVYS 484 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~ 484 (1086)
...+.+++|+|||+ .|++++. |+ .|++||+.+++....+..+.. .+.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 899999999998777765543 2777
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|+|||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 888 557889998886 999999998873 3445556667899999999999999886 347999999998776
Q ss_pred eEEecccc-------------cCCceEEEEEecCCCEEEEEECCC---------------------------------cE
Q 001396 563 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 596 (1086)
Q Consensus 563 ~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~s~dg---------------------------------~i 596 (1086)
+....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 55443320 001147799999999999987665 78
Q ss_pred EEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-----CCcEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 597 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 597 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.+++.......+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET------------- 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence 9999988 876554332123345788999 99999987764 345666766654322111100
Q ss_pred CceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccc
Q 001396 671 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 750 (1086)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 750 (1086)
.+
T Consensus 332 -----------------------------------------------------------------------------~~- 333 (741)
T 2ecf_A 332 -----------------------------------------------------------------------------SP- 333 (741)
T ss_dssp -----------------------------------------------------------------------------CS-
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred eeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEcc-Cce
Q 001396 751 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK 828 (1086)
Q Consensus 751 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~-~~~ 828 (1086)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 0001233567788887666665 4666666554 344
Q ss_pred EEEEEcCCCCCeEEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-ceeEEEeccccCCeEEEEEeCCCCEEEEEeCC--
Q 001396 829 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD-- 901 (1086)
Q Consensus 829 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~v~iwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-- 901 (1086)
...+..+...+..+ +|+| +++.|+ +++.++ .++||++.. +.....+.. ...+..++|||||++|+....+
T Consensus 371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 66777777888887 5999 776664 555555 899999874 555667765 6678999999999998876544
Q ss_pred --CcEEEEECCCC
Q 001396 902 --AQIFVWDVDGW 912 (1086)
Q Consensus 902 --g~i~iwd~~~~ 912 (1086)
..+.+|+..+.
T Consensus 448 ~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 448 TPPQIELFRANGE 460 (741)
T ss_dssp EEEEEEEEETTSC
T ss_pred CCCeEEEEEcCCC
Confidence 46889998654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.6e-23 Score=258.55 Aligned_cols=310 Identities=9% Similarity=0.079 Sum_probs=223.6
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc---cEEEEEECCCCCEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 406 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 406 (1086)
.+.+++|||||++ +++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 5788999999984 666 6889999999999986543 445554 499999999999999
Q ss_pred EEeCC---------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 407 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 407 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
+++.+ +.+++||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7899999999875 22223345666699999999999 5777764 7999999999988776655
Q ss_pred CCcce------------------EEEeecccCCccEEEEEEcCC----------------------------------eE
Q 001396 478 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 505 (1086)
Q Consensus 478 h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i 505 (1086)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 67788 55788898887653 79
Q ss_pred EEEEcCCCceeEEecCC------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce----
Q 001396 506 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 575 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 575 (1086)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999988765555543 45789999999999987776544456789999999998877665432 1333
Q ss_pred EEEEEecCCCEEEE--EECCC------cEEEEE-cCCCee--EEEEcCCCCCCCCce-EEEecCCCEEEEEECC---CcE
Q 001396 576 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 640 (1086)
Q Consensus 576 ~~~~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 640 (1086)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 344441 3333321 122333 6899999999877665 789
Q ss_pred EEEECCCCC--eeeeccc---cccceeeeEEccCC
Q 001396 641 KILETPESN--SVDAAGV---LSDNLRKLSVNPIS 670 (1086)
Q Consensus 641 ~iw~~~~~~--~~~~~~~---~~~~v~~~~~~p~~ 670 (1086)
++|++.... ....+.. +...+..++|+|++
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 999986432 2333332 34556667776443
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=6.8e-23 Score=252.84 Aligned_cols=386 Identities=11% Similarity=0.077 Sum_probs=254.6
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---------Cc
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 595 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~ 595 (1086)
...+++|+|||+++++ +. ++.|++||+.+++....+..+......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997655 32 5689999999999888877665211258999999999999998764 78
Q ss_pred EEEEEcCCCeeEEEEcC-CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 596 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++........+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999886 33332 222334788999999999999987 799999998775544332211110
Q ss_pred ccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ceeE
Q 001396 675 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 753 (1086)
Q Consensus 675 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~ 753 (1086)
+..|.. -|-.+ ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999888765 4566
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 833 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~ 833 (1086)
+|++.... + .+...+..+.|+++|.. ..+..|++||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 66543210 0 02234678888888863 22357999999998866666
Q ss_pred cCC------CCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCceeEEEecc-ccCCeE----EEEEeCCCCEEEE-
Q 001396 834 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS- 897 (1086)
Q Consensus 834 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~-h~~~v~----~l~~spdg~~l~s- 897 (1086)
..+ ...+.+++||| ||++|++... +..|++||+.+++....+.. |.+.+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 35899999999987766654 334443 7899999998775
Q ss_pred -EeCCC------cEEEEE-CCCCceeeeeeeeccCCCccCCCCceE-EEEecCCCEEEE-EeC---CeEEEEEcCCcc--
Q 001396 898 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 962 (1086)
Q Consensus 898 -~s~dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~~-~~d---~~i~vwd~~~~~-- 962 (1086)
...++ .|.+|| ..++.... ......+.. .+.. ++|||||+.|+. +.+ +.+++|++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45677 466677 33332000 011111222 2444 699999999986 444 679999987432
Q ss_pred ceeccccC--CccCEEEEEEeCCCCEEEEEECC-C--cEEEEEcCCCceeeee
Q 001396 963 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 963 ~~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~D-g--~v~vWd~~~~~~~~~~ 1010 (1086)
....+... |...+..++|||||++|+..... . .+.+++..++..+..+
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23322222 66778999999999988865432 2 2445666566554443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=9e-22 Score=217.38 Aligned_cols=280 Identities=10% Similarity=0.057 Sum_probs=206.3
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-CC
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 412 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 412 (1086)
..|++++++++++++.++.|.+||..+++.+.. ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777778899999999999999999987754 22344556 9999999997777665 88
Q ss_pred EEEEEEecCCCc-cccceEeccccccEeEEEecCCCCcEEEEEEeCC-C--cEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 413 IVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 413 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 4455666665699999999 56655444 3 8999999999998887654 446888885
Q ss_pred ccCCccEE-EEEEcCCe-EEEEEcCCCceeE----EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee-
Q 001396 489 AKENIHFI-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 561 (1086)
Q Consensus 489 ~~~~~~~l-~s~s~dg~-i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~- 561 (1086)
+ +|+++ ++...++. |.+|+++...... ...........++|+|||++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 5 66544 45556688 9999988654432 22234456789999999998776653 266899999999988
Q ss_pred --eeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCee--EEEEcCC----CC-CCCCceEEEecCCCEE
Q 001396 562 --KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLL 631 (1086)
Q Consensus 562 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l 631 (1086)
+..+... ..+..++|+|+++++++++ .++.|.+||+.+++. +..+... .. ......++|+|+|++|
T Consensus 212 ~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 212 TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 6666643 4678899999999887765 578899999999887 4443322 11 1112458999999988
Q ss_pred EEEEC-CCcEEEEECCCC
Q 001396 632 AVIAN-ENRIKILETPES 648 (1086)
Q Consensus 632 ~~~~~-dg~i~iw~~~~~ 648 (1086)
++++. ++.|.+|++...
T Consensus 288 ~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 288 FISANISRELKVFTISGK 305 (331)
T ss_dssp EEEETTTTEEEEEETTSC
T ss_pred EEecCCCCcEEEEEecCC
Confidence 77665 569999999864
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.9e-21 Score=214.47 Aligned_cols=274 Identities=11% Similarity=0.086 Sum_probs=213.5
Q ss_pred CCceEeeecCCCceEEEEEec------cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 329 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
..+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999975444433 6789999999998775421 12347789999999
Q ss_pred CEEEEE-eCCCEEEEEEecCCCccccceEeccccc---------cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 403 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 403 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+|+.+++...+.++.|.+||..+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 966655 5578999999999876553 333322 278899999999532222246889999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC----CCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
..+..+...+..++|+ +++.++++++.++.|.+||..+++....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 8887666668888885 4777899999999999999999887766654 3446788999999998877753 25
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 789999999999888877533 25689999999777766 68999999999999988887543 3689999999
Q ss_pred CCEEEEEECCC
Q 001396 628 GTLLAVIANEN 638 (1086)
Q Consensus 628 ~~~l~~~~~dg 638 (1086)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99888776654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=3.5e-21 Score=236.61 Aligned_cols=238 Identities=9% Similarity=-0.008 Sum_probs=166.8
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-ccceEecccc-----------------ccEeEEEecCCCCcEEEEE
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~v~~s~d~~~l~l~s 454 (1086)
+..+.|+ |..+++++.++ | +||+.+++.+ +. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457787 66777777888 8 9999998763 32 22332 46999999999 5 3443
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-----CceeEEecCCCCc----
Q 001396 455 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 525 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~---- 525 (1086)
+. ++.|++||+.+++... +..+...+.+++|+ +||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 6999999998887654 44567778888885 477788884 789999999988 6665544333332
Q ss_pred ----------eEEEEEecCCCEEEEEeeC-----------------------------CCCceeEEEEeCCCCeeeeEEe
Q 001396 526 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 526 ----------i~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
+.+++|+|||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988732 1246789999999988655443
Q ss_pred cccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeEEEEc-CC--CCCCCCceEEEec--CCCEEEEEEC
Q 001396 567 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AG--GGLPENPRICFNK--NGTLLAVIAN 636 (1086)
Q Consensus 567 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~v~~s~--~~~~l~~~~~ 636 (1086)
.. .+...+..++|+|||++|++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..
T Consensus 253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 21 1236789999999999999987665 89999999983333332 11 1111246789999 9988888888
Q ss_pred CCcEEEEECC
Q 001396 637 ENRIKILETP 646 (1086)
Q Consensus 637 dg~i~iw~~~ 646 (1086)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8877777654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=1.1e-20 Score=209.79 Aligned_cols=276 Identities=14% Similarity=0.163 Sum_probs=194.1
Q ss_pred CceEEEEEeccCcEEEEecC-CCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC-CEEEEE
Q 001396 340 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 417 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~~i~iw 417 (1086)
+++++++++.|+.|.+||+. +++..... ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 34566676889999999995 34322111 12366789999999999999998876 899999
Q ss_pred Eec--CCCccccceEeccccccEeEEEecCCCCcEEEEE-EeCCCcEEEEeCC---CCceeEEeecCCcceEEEeecccC
Q 001396 418 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 418 d~~--~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s-~~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
++. +++. .....+..+. .+.+++|+|+|+ .+++ +..++.|.+||+. +++.+..+..+ ..+.+++|+ +
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~ 138 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--P 138 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--T
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--C
Confidence 998 5442 2222343333 789999999999 4544 4458899999994 44455555543 457788885 4
Q ss_pred CccEEEEEE-cCCeEEEEEcCC-CceeE----EecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC--Cee-
Q 001396 492 NIHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI- 561 (1086)
Q Consensus 492 ~~~~l~s~s-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~- 561 (1086)
++.++++++ .++.|++||+.. ++... .... ....+..++|+|+++++++++. .++.|.+||+.. ++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 667777777 899999999987 44322 2222 3447888999999998876652 266899999953 433
Q ss_pred -eeEEeccc---ccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcC--C--CeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 562 -KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 562 -~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
........ .....+..++|+|++++++++. .++.|.+||+. + .+.+..+..+. .+..++|+|+|++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22222111 1123567899999999888654 78999999998 3 34444554432 278999999999988
Q ss_pred EEE-CCCcEEEEECC
Q 001396 633 VIA-NENRIKILETP 646 (1086)
Q Consensus 633 ~~~-~dg~i~iw~~~ 646 (1086)
+++ .++.|.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.1e-21 Score=238.69 Aligned_cols=324 Identities=9% Similarity=0.073 Sum_probs=220.6
Q ss_pred EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCC-----------------cceEEEeecccCCccEEEEE
Q 001396 438 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI 499 (1086)
Q Consensus 438 v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 499 (1086)
+..+.|+ |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|++ |+ .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG--RG-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT--TT-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC--CC-eEEEE
Confidence 5567888 55 466677777 8 9999999873 4443443 4689999966 43 44444
Q ss_pred EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-----CeeeeEEecccc----
Q 001396 500 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL---- 570 (1086)
Q Consensus 500 s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~---- 570 (1086)
.++.|++||+.+++.... ..+...+.+++|+|||++|+++. ++.|++||+.+ ++..+.......
T Consensus 99 -~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 459999999988765443 34456688899999999999864 56899999998 776554443330
Q ss_pred -------cCCceEEEEEecCCCEEEEEE---------------------------------CCCcEEEEEcCCCeeEEEE
Q 001396 571 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 571 -------~~~~v~~~~~~~~~~~l~~~s---------------------------------~dg~i~iwd~~~~~~~~~~ 610 (1086)
+...+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 001247899999999999987 4567999999998865544
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEECCC-----cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeec
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 685 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 685 (1086)
....+...+..++|+|||++|++++.++ .|.+||..++.....+.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------ 301 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------ 301 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence 3323334578999999999999887665 77777776542111110
Q ss_pred CCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccC
Q 001396 686 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 765 (1086)
Q Consensus 686 ~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 765 (1086)
.....
T Consensus 302 -----------------------------------------------------------~~~~~---------------- 306 (706)
T 2z3z_A 302 -----------------------------------------------------------VETDK---------------- 306 (706)
T ss_dssp -----------------------------------------------------------EEECS----------------
T ss_pred -----------------------------------------------------------EccCC----------------
Confidence 00000
Q ss_pred cccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec--CCCEEEEEe-CCeEEEEEcc-CceEEEEEcCCCCCeE
Q 001396 766 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTAT 841 (1086)
Q Consensus 766 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~ 841 (1086)
.....+..++|+| ||+++++++ ++.++||++. +++.+..+..+...+.
T Consensus 307 ----------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 307 ----------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp ----------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred ----------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 0111234567888 888777765 5777777765 6677777777777787
Q ss_pred E-EEEcCCCCCEEEEEe-CCC----eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCC----CcEEEEECCC
Q 001396 842 S-LAFNPHDNNVIAIGM-DDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDG 911 (1086)
Q Consensus 842 ~-l~~s~~d~~~lasg~-~dg----~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d----g~i~iwd~~~ 911 (1086)
. ++|+| +++.|+.++ .++ .|+.||+.+++ ...+. |...+.+++|||||++++..+.+ +.|++||+.+
T Consensus 359 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 359 NFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred eeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 6 89999 777665544 444 67777887765 34444 67779999999999998876443 4699999988
Q ss_pred Cc
Q 001396 912 WG 913 (1086)
Q Consensus 912 ~~ 913 (1086)
++
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 65
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.9e-20 Score=206.34 Aligned_cols=205 Identities=10% Similarity=0.164 Sum_probs=143.6
Q ss_pred CeeEEEeecCCCEEEEEe--CCeEEEEEc---cCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-c
Q 001396 798 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 870 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-~ 870 (1086)
.+..++|+|+|+++++++ ++.|.+||+ .+.+....+.. ...+.+++|+| +++++++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788888888776665 578999998 44455555553 34688999999 888777777 899999999987 6
Q ss_pred eeEE----Eecc-ccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCC--CceeeeeeeeccCCCccCCCCceEEEEecCC
Q 001396 871 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 871 ~~~~----~l~~-h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 942 (1086)
+... .+.. ....+.+++|+|++++|++++ .++.|.+|+++. ++......+............+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2232 334788999999999776554 789999999954 4332222333222111111246689999999
Q ss_pred CEEEEE--eCCeEEEEEcC--Cc--cceeccccCCccCEEEEEEeCCCCEEEEEE-CCCcEEEEEcC--CCce
Q 001396 943 TRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEAS--NLEV 1006 (1086)
Q Consensus 943 ~~l~~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~-~Dg~v~vWd~~--~~~~ 1006 (1086)
++|+++ .++.|.+||+. ++ +.+.. ...+. .+..++|+|||++|++++ .|+.|.+|+++ +++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 988863 57899999998 33 33333 22223 388999999999988887 57999999554 5644
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.7e-20 Score=207.63 Aligned_cols=279 Identities=10% Similarity=0.058 Sum_probs=208.1
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc-cEEEEEECCCCCEEEE-EeCCCEEEEEEec
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH 420 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~las-~~~d~~i~iwd~~ 420 (1086)
++++++.++.|.+||+.+++.+.... .++.. .+..++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 58899999999999999998775421 12222 4788999999987654 5567899999999
Q ss_pred CCCccccceEecc---ccccEeEEEecCCCCcEEEEEEe------------CCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 421 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 421 ~~~~~~~~~~~~~---h~~~v~~v~~s~d~~~l~l~s~~------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98765432 1111 233678899999999 555554 579999999999988887764 4557778
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc-----------------
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE----------------- 548 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~----------------- 548 (1086)
+|+ +++.+|+++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+... +.
T Consensus 141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADP 214 (337)
T ss_dssp EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSG
T ss_pred EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC-Cceeeeeeccccccccccc
Confidence 884 466777777 68999999998887766654431 11237899998776544211 11
Q ss_pred ----eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 549 ----SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 549 ----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
..|.+||+.+++.. ...... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|
T Consensus 215 ~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp GGEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 15799999998775 322211 12578899999999999988 7999999999999888876543 3689999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
+|+|+++++++.++.|.+||+.+++.+..+..
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99999999998999999999999887766653
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=3.3e-20 Score=205.38 Aligned_cols=279 Identities=13% Similarity=0.089 Sum_probs=203.4
Q ss_pred CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCcEEEEECCCCCeeeeccccccceee
Q 001396 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK 663 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 663 (1086)
+++++++.++.|++||+.+++.+..+........+..++|+|+|+.++++ ..++.|.+||+.+++.+..+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 47889999999999999999998888754311126889999999876554 45789999998876544322100000
Q ss_pred eEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceE
Q 001396 664 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 743 (1086)
Q Consensus 664 ~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 743 (1086)
.+
T Consensus 79 --------------------------------------------------------------~~---------------- 80 (337)
T 1pby_B 79 --------------------------------------------------------------ER---------------- 80 (337)
T ss_dssp --------------------------------------------------------------EE----------------
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE---------
Q 001396 744 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 814 (1086)
Q Consensus 744 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--------- 814 (1086)
...+..++|+|||++++++
T Consensus 81 ----------------------------------------------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 81 ----------------------------------------------------VKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp ----------------------------------------------------EECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred ----------------------------------------------------cccccceEECCCCCEEEEEecccccccc
Confidence 0012234555555555554
Q ss_pred ----eCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeC
Q 001396 815 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 890 (1086)
Q Consensus 815 ----~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp 890 (1086)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~ 183 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQP 183 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCC
Confidence 358899999999998887764 45678899999 88877777 68899999999998877765441 11237899
Q ss_pred CCCEEEEEeCCC------------------------cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEE
Q 001396 891 ALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 946 (1086)
Q Consensus 891 dg~~l~s~s~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 946 (1086)
||+.++..+.++ .|.+||+.+++... ..+.. +. ..+..++|+|||++++
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~l~ 256 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTRAF 256 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSEEE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCEEE
Confidence 998776554332 46899999876541 11111 11 2477899999999998
Q ss_pred EEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 947 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 947 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.|+.|++||+.+++.+..+.
T Consensus 257 ~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 257 GA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred Ee-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 88 79999999999887765443 3467899999999999999999999999999999988876
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=7.6e-20 Score=201.86 Aligned_cols=196 Identities=10% Similarity=0.014 Sum_probs=143.8
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcCCCce-eEE
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-RVD 518 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~~~ 518 (1086)
..|.++++. ++++++.++.|.+||+.+++.+..+..+...+ .++|++ +++++++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 456677665 68888899999999999999988887776667 888854 6666666555 89999999998887 556
Q ss_pred ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-ECCCc-E
Q 001396 519 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHV-I 596 (1086)
Q Consensus 519 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~-i 596 (1086)
+..+..+..+++|+|+|+++++... ..+...|.+||+.+++.+..+.... ....++|+|+|++++++ ..++. |
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIPY----DAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECCT----TEEEEEECTTSSCEEEEEETTTTEE
T ss_pred cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECCC----CccceEECCCCCEEEEEecCCCceE
Confidence 6555555555999999999994432 2122389999999999888776543 56899999999876665 56688 9
Q ss_pred EEEEcCCCeeE-----EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 001396 597 KIWDMNKVQLL-----TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPES 648 (1086)
Q Consensus 597 ~iwd~~~~~~~-----~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~ 648 (1086)
.+|++.....+ ..+.. ......++|+|+|+++++++ .++.|.+||+.++
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred EEEEECCCCcEeecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99998764332 12211 12367899999998666555 5788999987755
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.1e-19 Score=202.67 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=196.8
Q ss_pred ccEEEEEECCCCCEEEEEeC-------CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 391 VSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
..+..++|+|||++|++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. ++++...++.|.+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVTA 115 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEEE
Confidence 56889999999999988874 56899999999876553 22 2345788999999995 4556667899999
Q ss_pred EeCCCCceeEEeecCCcc---------eEEEeecccCCccEEEEEE--cCCeEEEEEcCCCceeEEecCCCCceEEEEEe
Q 001396 464 WDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 532 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s 532 (1086)
||..+++.+..+..+... +..++|++ ++.++++++ .++.|.+||..+.+....+......+..++|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 999999998888765432 67788854 666666665 48899999999988888777566668889999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-cCCceEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeeEEEE
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~ 610 (1086)
|+|++++++.. ++.|.+||..+++.+..+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..+
T Consensus 194 ~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 194 SEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp TTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999998864 66799999999998888765221 2356888999999998887765 499999999999998888
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeee
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA 653 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~ 653 (1086)
.... ...++|+|+|++++++. .++.|.+||..+++.+..
T Consensus 270 ~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 270 AAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp ECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 7543 25799999999776666 689999999987755443
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=8.2e-21 Score=205.76 Aligned_cols=257 Identities=14% Similarity=0.115 Sum_probs=188.1
Q ss_pred EEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecC-CCc
Q 001396 346 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 424 (1086)
Q Consensus 346 ~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~~ 424 (1086)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44568999999999887653 334788999999999999999986 77999999998 765
Q ss_pred cccceEeccc-cccEeEEEecCCCCcEEEEEEe--CCCcEEE--EeCCCCceeEEeecCCcceEEEeecccCCccEEE-E
Q 001396 425 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 498 (1086)
Q Consensus 425 ~~~~~~~~~h-~~~v~~v~~s~d~~~l~l~s~~--~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s 498 (1086)
.. ....| ...+.+++|+|||+ .+++++ .++...| |+..+++ ...+..+. .+..++|++ +++.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence 43 23344 46889999999999 677777 3344444 5555554 44554443 488888854 666666 7
Q ss_pred EEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceE
Q 001396 499 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 576 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 576 (1086)
++.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++.. ++.+.+|++. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445566667789999999999998877631 3346666654 344555666555 6788
Q ss_pred EEEEecCCCEEEEEECC-----------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 577 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999988765 569999999887644433222234578899999999998887653
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=232.77 Aligned_cols=377 Identities=12% Similarity=0.043 Sum_probs=243.8
Q ss_pred EEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC---------CCcEEE
Q 001396 528 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 598 (1086)
Q Consensus 528 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i 598 (1086)
+++|+|||++++++ . ++.|++||..+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999665543 2 567999999999988777765411124889999999999998876 789999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc-ccccceeeeEEccCCCceeccc
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.++....... ++..
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------------------ 152 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------------------ 152 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------------------
Confidence 999998873111111 2478899999999999986 6899999998775433211 0000
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ceeEEee
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWR 756 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~ 756 (1086)
.+..|..+ .++.- .-.....+++|||||+.|+.++.+ +.+.+|.
T Consensus 153 ----------------~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 153 ----------------KIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp ----------------TEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEE
T ss_pred ----------------CeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEE
Confidence 00000000 00000 001223578999999999988765 4555554
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEE---E--
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI---L-- 831 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~---~-- 831 (1086)
+.... . .+...+..+.+...|.. .....|++||+.+++.. .
T Consensus 198 ~~~~~--------------------~-----------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 198 YSYYG--------------------D-----------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp EEECC--------------------S-----------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECC
T ss_pred eeccC--------------------C-----------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEcc
Confidence 32110 0 02223445555554431 11347999999987642 1
Q ss_pred ---EEcCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCceeEEEe----ccccCCeE-----EEEEeCC
Q 001396 832 ---TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDA 891 (1086)
Q Consensus 832 ---~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd----~~~~~~~~~l----~~h~~~v~-----~l~~spd 891 (1086)
.+.+|...+.+++||| |++++++.... ..|.+|| +.+++....+ .+|.+.+. .++||||
T Consensus 244 ~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1235777899999999 78887775433 2588999 8888776666 46777776 8999999
Q ss_pred CCEEEE--EeCCC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeC-----CeEEEEEcCC-
Q 001396 892 LNILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE- 960 (1086)
Q Consensus 892 g~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~~i~vwd~~~- 960 (1086)
|+.|+. ...+| .|.+||+.+++.. .+ ..+. ..+..+.++ +++.|+. +.+ +...+|.+..
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~---~l--t~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENAI---QI--TSGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTCE---EC--SCSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred CCeEEEEEEccCCceEEEEEECCCCceE---ec--ccCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 996654 44555 5677777665421 11 1111 146778888 8888877 443 6788887753
Q ss_pred -ccc-eecc---ccCCccCEEEEEEeCCCCEEEEE-ECC--CcEEEEEcCCCceeeeec
Q 001396 961 -LTC-LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 961 -~~~-~~~~---~~~h~~~v~~l~fs~dg~~l~s~-~~D--g~v~vWd~~~~~~~~~~~ 1011 (1086)
+.. ...+ +.+|...+..+.||+||++++.. +.+ ..+.+||+.+++....+.
T Consensus 393 ~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 393 SYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 1211 22366788899999999877744 333 468999998888655444
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=2.1e-20 Score=223.66 Aligned_cols=272 Identities=12% Similarity=0.072 Sum_probs=198.4
Q ss_pred CCCceEeeecCCCceEEEEEec-cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEECCCCCEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 405 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 405 (1086)
..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +++
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 458999999999996 666665 9999999997766543 34454 68999999999 777
Q ss_pred EEEeC---CCEEEEEEecC--CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 406 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 406 as~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
++++. +....||.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45566766654 22112 222222 34467899999875666666555 4599999987665554333
Q ss_pred ceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 481 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666774 578899988877 78999999887765 55667778899999999999995433 33458999999
Q ss_pred CCCeeeeEEecccccCCceEEEE--------EecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.+++.. .+.++. ..+..++ |+|||..+++++.++.+++|++ ++..... ...+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CC
Confidence 998877 666554 5555566 9999988888999999999999 6655421 1347789999 99
Q ss_pred CEEEEEECCCc---EEEEECC
Q 001396 629 TLLAVIANENR---IKILETP 646 (1086)
Q Consensus 629 ~~l~~~~~dg~---i~iw~~~ 646 (1086)
+++++++.+.+ +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99888877644 5556554
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.1e-19 Score=196.92 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=181.8
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCC-CccEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRV 396 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l 396 (1086)
.....+..|...|.+++|||||++ |++++ ++.|.+||+.+ ++.... ..+| ...|.++
T Consensus 32 ~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~ 90 (297)
T 2ojh_A 32 RKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNNDH 90 (297)
T ss_dssp TEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSCC
T ss_pred CceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccce
Confidence 344556778889999999999995 67665 78999999998 765532 3334 4788999
Q ss_pred EECCCCCEEEEEe--CCCEEEEEEe--cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCce
Q 001396 397 VWSPDGSLLGVAY--SKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSR 471 (1086)
Q Consensus 397 ~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~ 471 (1086)
+|+|||++|++++ .++...||.+ .+++ .. .+..+ ..+..++|+||++. ++++++.|+.++||++. .+..
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCC
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCc
Confidence 9999999999998 3344555554 4443 22 23333 34899999999994 34477889999999853 2334
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcC-CCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC---
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--- 546 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--- 546 (1086)
...+..+...+.+++|++ ++..|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.
T Consensus 165 ~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp EEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 566777888999999955 667777665 59999999987 45556666777778999999999999998876432
Q ss_pred ----CceeEEEEeCCCCeeeeEE--ecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 547 ----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 547 ----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2467999999988664433 3545 7888999999999998877543
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1e-18 Score=194.06 Aligned_cols=247 Identities=12% Similarity=0.142 Sum_probs=169.9
Q ss_pred CCCCeeEEEeecCCCEEEEEe---CCeEEEEEccCce--EEEEEcCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001396 795 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 868 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 868 (1086)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345567899999999444443 3789999998766 3444455677888999999 888888877 77999999996
Q ss_pred -Cc--eeEEEecc---------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceeeeeeeeccCCCccCCCCceE
Q 001396 869 -SS--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 869 -~~--~~~~~l~~---------h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++......+....+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333321 12348899999999977777778899999998 444332222222222 24678
Q ss_pred EEEecCCCEEEEE--eCCeEEEEEcCC--ccceec-cccCC------ccCEEEEEEeCCCCEE-EEEECCCcEEEEEcCC
Q 001396 936 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPIS------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 936 ~~~s~dg~~l~~~--~d~~i~vwd~~~--~~~~~~-~~~~h------~~~v~~l~fs~dg~~l-~s~~~Dg~v~vWd~~~ 1003 (1086)
++|+|||++++++ .++.+.+|++.. ++.... ..... ...+..++|+|||++| ++...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 567899999874 442111 01111 1458899999999987 4555689999999973
Q ss_pred C---ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-CcEEEEccCCCC
Q 001396 1004 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPG 1058 (1086)
Q Consensus 1004 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d-g~v~vw~~~~~~ 1058 (1086)
. ..+..+. . ....+..++|+| |+++|++++.+ +.|.+|++....
T Consensus 272 ~g~~~~~~~~~------~----~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 272 DGHLTLIQQIS------T----EGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp GGCEEEEEEEE------C----SSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCcEEEeEEEe------c----CCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCC
Confidence 3 2232222 1 112356899999 78888887765 899999775443
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=3.3e-20 Score=228.34 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=198.4
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc---cEEEEEECCCCCEEEEE
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~ 408 (1086)
..++|+|||+ +++++ .|++|++||+.+|+.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 46654 589999999999986543 333333 48999999999999998
Q ss_pred eC---------CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecC
Q 001396 409 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 478 (1086)
Q Consensus 409 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h 478 (1086)
+. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. ++.|++||+.+++..... .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998752101 12 24688999999999 566665 789999999988765432 233
Q ss_pred Ccce-----------------EEEeecccCCccEEEEEEcCC----------------------------------eEEE
Q 001396 479 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 507 (1086)
Q Consensus 479 ~~~v-----------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~v 507 (1086)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 3222 36777 55888999988653 7889
Q ss_pred EEcCCCcee--EE------ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe----CCCCeeeeEE----eccccc
Q 001396 508 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 571 (1086)
Q Consensus 508 wd~~~~~~~--~~------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 571 (1086)
||+.+++.. .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999887652 12 2246667899999999887776544334456799999 8888776655 3444
Q ss_pred CCceE-----EEEEecCCCEEEE--EECCC--cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----
Q 001396 572 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 637 (1086)
Q Consensus 572 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 637 (1086)
..+. .+.|+|||+.++. ...+| .|++||+.+++ ...+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4555 7899999997655 33555 57777877766 3344322 2236677777 88888777765
Q ss_pred CcEEEEECCC
Q 001396 638 NRIKILETPE 647 (1086)
Q Consensus 638 g~i~iw~~~~ 647 (1086)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7888888764
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=2.4e-19 Score=202.77 Aligned_cols=309 Identities=10% Similarity=0.014 Sum_probs=203.5
Q ss_pred ccCCCccceeeeeccCCCCceE-----eeecCCCceEEEEEeccCc--EEEEecCCCceeeeeeeeeeeccccceeeeee
Q 001396 312 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 384 (1086)
Q Consensus 312 ~~~~~p~~~~~~l~~h~~~V~~-----~~~spdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1086)
++.......+..|..|...+.. .+|||||++|+.++..++. |.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 3444445666777777766665 8999999974444443674 88889988876542
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEE--ecCCCCcEEEEE--------
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT-------- 454 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~--~s~d~~~l~l~s-------- 454 (1086)
..+|...+..++|||||++|++++.++.|++||+.+++... .+..+...+.... +++|++ .++.
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34555556578899999999999999999999999987543 2334444444343 489998 4543
Q ss_pred --------------EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCc
Q 001396 455 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG 514 (1086)
Q Consensus 455 --------------~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~ 514 (1086)
.+.+..|.+||+.+++.. .+..+...+..++|+|. ||..|+..+.+ ..|.++|.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 224578999999998754 44456777888888541 66778777653 367778876655
Q ss_pred eeEEecCCC-CceEEEEEecCCCEEEEEeeCC-CCceeEEEEeCCCCeeeeE--EecccccCCceEEEEEecCCCEEEEE
Q 001396 515 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA 590 (1086)
Q Consensus 515 ~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 590 (1086)
......... ..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|||+.|+..
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 443333332 3577899999999887665432 2234599999999875332 22210000001123699999988764
Q ss_pred ---------ECCCcEEEEEcCCCeeEEEEcCCCCCC--------CCceEEEecCCCEEEEEEC-CCcEEEEECC
Q 001396 591 ---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 646 (1086)
Q Consensus 591 ---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 646 (1086)
..+..|++||+.+++............ .+..++|+|||+.|+..+. ++...+|.+.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456789999999987654433322100 3678899999998887764 6666666543
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=6.1e-19 Score=216.67 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=186.9
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc-----cEEEEEECCCCC
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 403 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 403 (1086)
.....++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 57776 89999999999986543 444543 234589999999
Q ss_pred EEEEEeCC---------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 404 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 404 ~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+||+++.+ +.+.+||+.+++... +..|.+.+..++|||||+ .|+.+. |+.|++||+.+|+..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 567799999987543 567788899999999999 566664 78999999988875532
Q ss_pred -eecCCcce-----------------EEEeecccCCccEEEEEEcCCe-EEEEEcCCCceeEEecCCCCceEEEEEecCC
Q 001396 475 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 475 -~~~h~~~v-----------------~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 535 (1086)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22332222 23566 568889988876655 8888764221100 123355667777766
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC---Ce--eeeEEeccc---ccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK 603 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~ 603 (1086)
.. .....|++||+.+ ++ ....+.... .+...+..++|+|||+.++... .+..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 1244699999998 73 222333210 1236789999999998766643 234799999998
Q ss_pred Ce----eE--EEE--cCCCCCCC---CceEEEecCCCEEE-EEEC-C--CcEEEEECCCCC
Q 001396 604 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 649 (1086)
Q Consensus 604 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~ 649 (1086)
++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|.+|+..++.
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 87 21 111 22221111 23789999999887 6654 3 357777776543
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.9e-17 Score=184.95 Aligned_cols=310 Identities=12% Similarity=0.120 Sum_probs=196.1
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeC--CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC----CcEEEEEcCC--C
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 604 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~--~ 604 (1086)
+...+++.++....+++.|++|++ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 344566666554444566777755 5565543333233 677889999999999998876 7999998875 4
Q ss_pred eeE--EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCe
Q 001396 605 QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 681 (1086)
Q Consensus 605 ~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 681 (1086)
+.. ....... .....+++ ++++++++. .++.|.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------- 138 (361)
T ss_dssp EEEEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-------------------------
T ss_pred cEEEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce-------------------------
Confidence 433 2332222 23455666 788777776 578899999864322211100
Q ss_pred eeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCc
Q 001396 682 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 761 (1086)
Q Consensus 682 ~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~ 761 (1086)
. +...+. +
T Consensus 139 ----------------------------------------------------~-~~~~g~--------~----------- 146 (361)
T 3scy_A 139 ----------------------------------------------------V-IEFKGS--------G----------- 146 (361)
T ss_dssp ----------------------------------------------------E-EECCCC--------C-----------
T ss_pred ----------------------------------------------------e-EEccCC--------C-----------
Confidence 0 000000 0
Q ss_pred cccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCce-------E---
Q 001396 762 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T--- 829 (1086)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~-------~--- 829 (1086)
. .+...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 147 ---------------------~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 147 ---------------------P------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp ---------------------S------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred ---------------------C------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 0 00001233467788888888776665 5788888876432 1
Q ss_pred ---EEEEcCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcee--EEEe---ccccCCeEEEEEeCCCCEEEEEeC
Q 001396 830 ---ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGG 900 (1086)
Q Consensus 830 ---~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~v~~l~~spdg~~l~s~s~ 900 (1086)
......+......++|+| +++++++++ .++.|.+|++.+++. +..+ ..+...+..++|+|||++|+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 122233456678999999 888877776 689999999997754 2323 334456789999999999877665
Q ss_pred C--CcEEEEECC--CCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--eCCeEEEEEc--CCccceeccccCCc
Q 001396 901 D--AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISS 972 (1086)
Q Consensus 901 d--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~h~ 972 (1086)
+ +.|.+|+++ ++.......+.. + ..+..++|+|||++|+++ .++.+.+|++ .+++........+.
T Consensus 279 ~~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~ 351 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKV 351 (361)
T ss_dssp SSSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEEC
T ss_pred CCCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeC
Confidence 4 899999996 334322222222 1 247799999999999885 4678999654 46665543223345
Q ss_pred cCEEEEEEe
Q 001396 973 VPISQATFS 981 (1086)
Q Consensus 973 ~~v~~l~fs 981 (1086)
..+.++.|.
T Consensus 352 ~~p~~v~~~ 360 (361)
T 3scy_A 352 DKPVCLKFV 360 (361)
T ss_dssp SSEEEEEEE
T ss_pred CCCeEEEEc
Confidence 678888886
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=8.3e-18 Score=187.87 Aligned_cols=300 Identities=13% Similarity=0.130 Sum_probs=197.9
Q ss_pred ecCCCceEEEEEec----cCcEEEEec--CCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 336 FHPVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 336 ~spdg~~lla~gs~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
..+... .+.+|+. ++.|.+|++ .+|+..... .. +...+..++|+|||++|++++
T Consensus 9 ~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVN 68 (361)
T ss_dssp GGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEE
T ss_pred hCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEE
Confidence 344444 4666654 467888876 455543220 11 557788899999999999998
Q ss_pred CC----CEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe------ec-
Q 001396 410 SK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG- 477 (1086)
Q Consensus 410 ~d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~------~~- 477 (1086)
.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.+...+..+ .+
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 75 79999999863 223333334445566778888 7773 3444446889999999754433211 11
Q ss_pred -------CCcceEEEeecccCCccEEEEEE-cCCeEEEEEcCCCce-------------eEEecCCCCceEEEEEecCCC
Q 001396 478 -------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-------------RVDYDAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 478 -------h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~~~~s~d~~ 536 (1086)
+...+.+++|+ ++|+++++++ .++.|++|+++.... .............++|+|||+
T Consensus 146 ~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 12234778885 4777665554 589999999886542 122233445678999999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECC--CcEEEEEcC--CCe--eEE
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMN--KVQ--LLT 608 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--g~i~iwd~~--~~~--~~~ 608 (1086)
+++++.. .++.|.+||+.+++. +..+.....+......++|+|||++|+++..+ +.|.+|++. +++ .+.
T Consensus 224 ~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 224 FAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp EEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred EEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 8887763 266799999987754 33333333223456899999999999777654 899999996 454 344
Q ss_pred EEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECC--CCCeeeec-cccccceeeeEE
Q 001396 609 TIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV 666 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~ 666 (1086)
.+.. + ..+..++|+|+|++|++++ .++.|.+|++. +++..... ..+...+.|+.|
T Consensus 301 ~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 301 YQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 4443 2 3468999999999998888 57899996554 55544333 223345556555
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=7e-18 Score=187.36 Aligned_cols=251 Identities=11% Similarity=0.132 Sum_probs=172.9
Q ss_pred CCccEEEEEECCCCCEEEEEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CCCcEEEE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVW 464 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d~~i~iw 464 (1086)
+...+..++|+|||+ |++++. ++.|++|++.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 446678899999999 555544 68999999987653 33334456778899999999999 566666 78999999
Q ss_pred eCC-CCc--eeEEeec---------CCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeE--EecC-CCCceEE
Q 001396 465 DAV-TGS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARV--DYDA-PGLGCTR 528 (1086)
Q Consensus 465 d~~-~~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~--~~~~-~~~~i~~ 528 (1086)
|+. +|. .+..+.. +...+.+++|++ +++++++...++.|++|++. .+.... .... .......
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 986 333 2333321 122477888855 66667777778999999998 333222 2222 3346788
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCC--Ceee--eEEecccc---cCCceEEEEEecCCCEEEE-EECCCcEEEEE
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVHFDTAKDQILA-AGDDHVIKIWD 600 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd 600 (1086)
++|+|||++++++.. .++.|.+|++.. ++.. ..+..... ....+..++|+|+|++|++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 256788998774 5432 22222220 0135888999999998855 56789999999
Q ss_pred cCC---CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-CcEEEEEC--CCCCe
Q 001396 601 MNK---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILET--PESNS 650 (1086)
Q Consensus 601 ~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~--~~~~~ 650 (1086)
+.. .+.+..+..++ ..+..++|+|||++|+++..+ +.|.+|++ .+++.
T Consensus 269 ~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp ECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 973 24455555432 246899999999999888765 89999955 44543
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=3.9e-19 Score=212.66 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=176.4
Q ss_pred CccEEEEEECCCCCEEEEEeC-CCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeC---CCcEEEE
Q 001396 390 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 464 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~---d~~i~iw 464 (1086)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 467999999999999999887 999999999776543 244555 68999999999 5 6776664 4555665
Q ss_pred eCCC---CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 465 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 465 d~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
.+.. +... .+..+. .+...+|++++++..+++++.++. .+||+.+++.......+. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 4432 3322 443222 344567777766555665555555 499998877655443333 789999999999988
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC--cEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||++|+++..++ .|++||+.+++.. .+..+ ...+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence 765444478999999988765 555555 7789999999999999888888 8999999998877 54433 2335
Q ss_pred ceEE--------EecCCCEEEEEECCCcEEEEEC
Q 001396 620 PRIC--------FNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 620 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=2.2e-18 Score=191.66 Aligned_cols=283 Identities=11% Similarity=0.062 Sum_probs=194.8
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE-EeC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV-AYS 410 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~ 410 (1086)
+.++++++++ ++++++.+++|.+||+.+++.+..... +....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888886 689999999999999999987654211 12125778999999997654 456
Q ss_pred CCEEEEEEecCCCccccceEec-cc-----cccEeEEEecCCCCcEEEEEEeCC------------CcEEEEeCCCCce-
Q 001396 411 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 471 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~v~~s~d~~~l~l~s~~~d------------~~i~iwd~~~~~~- 471 (1086)
++.|.+||+.+++.... +. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 89999999998875542 22 22 23478999999999 56666644 8999999998543
Q ss_pred --eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC------------------------c
Q 001396 472 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 525 (1086)
Q Consensus 472 --~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------------------~ 525 (1086)
+..+. +...+.+++|++ +++ +++++ +.|.+||..+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 334577888854 666 55544 4499999998887665543320 2
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE-EecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCC
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|++||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 344666665532211110 011233366665543211 1112 35788999999 99999888 88999999999
Q ss_pred CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 604 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 604 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
++.+..+.... .+.+++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888876543 36789999999999888889999999999887766554
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=8.6e-19 Score=199.26 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=160.7
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE-
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 406 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 406 (1086)
...++.+++++++. ++++|+.++ ++||+...-..... . ..+.. ....+.......|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK-P--GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC-T--TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc-c--ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 588888877 89988642111000 0 00000 000001111224677899999999999999
Q ss_pred ---EEeCCCEEEEEEecCC--------CccccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 407 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 407 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 222223456689999999999998 56 899999999999999999987777
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------CCceEEEEEecCCCEEEEEeeCC--
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 545 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~~-- 545 (1086)
..+|...|.+++|++ +|.+|++|+.||+|++||.+ +.....+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999965 67899999999999999998 4444444333 22789999999998887655322
Q ss_pred -CCceeEEEEeCCCC
Q 001396 546 -EGESFLVEWNESEG 559 (1086)
Q Consensus 546 -~~~~~i~iwd~~~~ 559 (1086)
+....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11235899998764
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=9.2e-18 Score=206.16 Aligned_cols=380 Identities=12% Similarity=0.031 Sum_probs=242.0
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce--EEEEEecCCCEEEEEECC---------C
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 594 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g 594 (1086)
..+++|+|||++++++ ++.|++||+.+++....+.++......+ ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988885 4579999999999888888776222223 448899999999998875 5
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc-ccccceeeeEEccCCCce
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~ 673 (1086)
.+.+||+.+++... +..+ ...+..++|||||+.||.+. ++.|++|+..++....... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999998654 3222 23578999999999999885 5899999998765432111 00000
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-cee
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 752 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i 752 (1086)
+..+.. -.+|.-+ -......+.|||||+.|+.++.| +.+
T Consensus 156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 000000 0000000 01223467899999999988765 447
Q ss_pred EEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccC---ce-
Q 001396 753 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK- 828 (1086)
Q Consensus 753 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~---~~- 828 (1086)
.+|++..... +. .+...+..+.+.+.|..- ....|.+||+.+ ++
T Consensus 196 ~~~~~~~~~~-------------------~~----------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 196 PLIEYSFYSD-------------------ES----------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp CEEEEEECCS-------------------TT----------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred ceEEEEeecC-------------------CC----------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence 7776532110 00 133445667777766421 123689999998 73
Q ss_pred -EEEEEc------CCCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCce----eE--EEe--ccccCCeE-----
Q 001396 829 -TILTIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----- 884 (1086)
Q Consensus 829 -~~~~~~------~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~v~----- 884 (1086)
....+. ++...+..++|+| |+++++.... +..|++||+.+++ +. ..+ .+|.+.|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 223343 3677899999999 7887665533 3479999999887 22 222 45665554
Q ss_pred EEEEeCCCCEEE-EEeC-C--CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeC-----C--e
Q 001396 885 GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H 952 (1086)
Q Consensus 885 ~l~~spdg~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~--~ 952 (1086)
.++|||||+.|+ ..+. + ..|++||+.+++.. +...+.. .+..+. ++|++.|+. +.. + .
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence 789999999887 6654 3 46888898875522 2223322 244443 355777766 432 2 4
Q ss_pred EEEEEcCCccceeccc---cCCccCEEEEEEeCCCCEEEEEECC---CcEEEEEcCCCceeeeec
Q 001396 953 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~s~~~D---g~v~vWd~~~~~~~~~~~ 1011 (1086)
|+..++..+.....+. .+....+..+.|||||++++..... ..+.+++..+++.+..+.
T Consensus 393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 5555655544321222 1234678899999999987755543 368888988887654443
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=3.4e-19 Score=202.56 Aligned_cols=270 Identities=12% Similarity=0.113 Sum_probs=185.1
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEEccCce----------EEEE-----EcCCCCCeEEEEEcCCCCCEEE----EE
Q 001396 796 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 856 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg 856 (1086)
...+..+++++++.++++++...+++|+..... .+.. ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 445789999999999999986559998764210 1111 112556799999999 889999 78
Q ss_pred eCCCeEEEEEcCCc--------e---eEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccC
Q 001396 857 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 857 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
+.|+.|++||+.++ + .+..+.+|.+.|.+++|+|+ +.+|++++.||+|++||+.++.. +....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 88999999999765 2 24667789999999999998 89999999999999999998632 11222
Q ss_pred CCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccc------cCCccCEEEEEEeCCCCEEEE-EECCCc-
Q 001396 925 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------PISSVPISQATFSCDCRMVFT-SFVDGT- 995 (1086)
Q Consensus 925 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~s-~~~Dg~- 995 (1086)
+|.. .|.+++|+|+|++|++ +.|+.|++||.+ ++....+. ..|...|.+++|++++.++++ ++.||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 3333 6999999999999999 578999999998 44433221 123458999999999988764 334433
Q ss_pred -----EEEEEcCCCcee-----eeeccccccCCCCccCcccceEEEECCCCCCEEEEEe-CCCcEEEEccCCCCCCCCCC
Q 001396 996 -----LSIHEASNLEVQ-----CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEPNEPGDTWAVL 1064 (1086)
Q Consensus 996 -----v~vWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~ 1064 (1086)
+++|++...... ..+....+-. + ........+.+.+ +.+++++++ ..+.|.++.....+..|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~-~--~~r~~~~~~~~l~-dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGS-C--TERQHHYYLSYIE-EWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCC-C--SSSCCCEEEEEEG-GGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCC-C--CCcCcceeeehhc-cCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 899999865321 1111111100 0 1111122344446 455555554 45668999887766678766
Q ss_pred CcccccCCCCCCCCc
Q 001396 1065 PPDEIVGDQPTSTSE 1079 (1086)
Q Consensus 1065 ~p~~~~~~~~~~~~~ 1079 (1086)
...|..+++-+.+.+
T Consensus 342 ~~~d~~ra~lP~~~~ 356 (434)
T 2oit_A 342 LLEDSSRAELPVTDK 356 (434)
T ss_dssp EECGGGCCBCCBCTT
T ss_pred eccccccccccCCCC
Confidence 666666665555544
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=1e-17 Score=186.18 Aligned_cols=307 Identities=10% Similarity=0.002 Sum_probs=198.2
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
..++.++++++.++.|++||..+++....+..+. ..+..++|+|+|+++++... .++.|++||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4467789999999999999999988776665443 25778999999997766542 2668999999999888777643
Q ss_pred ccc---CCceEEEEEecCCCEEEEEECC------------CcEEEEEcCCCee---EEEEcCCCCCCCCceEEEecCCCE
Q 001396 569 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 569 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
... ...+..++|+|+++++++++.+ +.|.+||+.+++. +.....+. .+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeECCCCc-
Confidence 200 1237889999999999998865 8999999988543 34443332 478899999999
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
+++++ +.|.+||..+++....+....... + . ......+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~----------------------------~----~--~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNR----------------------------K----G--YSAPDVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCC----------------------------T----T--BCCCBCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCC----------------------------c----c--ccCccceeeecCC
Confidence 55554 449999999887665443211000 0 0 0000112233211
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccce-eEEeeccCCccccCcccccccCCceecCCCCCceeeec
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV-HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 789 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 789 (1086)
.... .......+++++++........... +..++.... .+..++.
T Consensus 205 ~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~---------- 250 (349)
T 1jmx_B 205 SPRH------------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG------------KTHTQEF---------- 250 (349)
T ss_dssp CTTC------------EEEEEEEEEEC-------CCCEEEEEEEEEETTTC------------CEEEEEE----------
T ss_pred Ccce------------eEEeeeeeeecCCCcCCccccccceeEEEEeccCC------------cEEeccc----------
Confidence 0000 0012334556655432211111111 111221111 1111111
Q ss_pred CCCCCCCCCeeEEEeec-CCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001396 790 TTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 790 ~~~~~~~~~v~~l~~s~-dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~ 868 (1086)
. .+...+..++++| |+++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|.+||+.
T Consensus 251 -~--~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 251 -A--DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp -E--ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred -c--cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEEecc
Confidence 0 1345678999999 99999988 89999999999998888763 34567999999 78777778889999999999
Q ss_pred CceeEEEeccc
Q 001396 869 SSEVISKLEGH 879 (1086)
Q Consensus 869 ~~~~~~~l~~h 879 (1086)
+++.+..+...
T Consensus 325 ~~~~~~~~~~~ 335 (349)
T 1jmx_B 325 TLEKVKNIKLP 335 (349)
T ss_dssp TTEEEEEEECS
T ss_pred ccceeeeeecC
Confidence 99988877644
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=6.5e-18 Score=190.99 Aligned_cols=294 Identities=11% Similarity=0.020 Sum_probs=199.6
Q ss_pred ecCCCccEEE-----EEECCCCCEEEEEeC-CC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC
Q 001396 386 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 386 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
+..|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 6667666666 899999999999987 66 48888998886543 2345555666789999999 7888888
Q ss_pred CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE----------------------cCCeEEEEEcCCCce
Q 001396 458 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 515 (1086)
Q Consensus 458 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------------------~dg~i~vwd~~~~~~ 515 (1086)
++.|++||+.+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999999877777777666656555567887777432 346799999988765
Q ss_pred eEEecCCCCceEEEEEec-CCCEEEEEeeCCC--CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC
Q 001396 516 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 516 ~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
.... .+...+..++|+| ||+.|+.+..... ....|+++|..++.......... ...+....|+|||+.|+..+.
T Consensus 181 ~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 4433 3455688999999 9999988775321 14478899987665433322211 125778899999998866442
Q ss_pred -CC----cEEEEEcCCCeeEEEEcCCCC--C-CCCceEEEecCCCEEEEE---------ECCCcEEEEECCCCCeeeecc
Q 001396 593 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 593 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
++ .|++||+.+++.......... . .....++|+|||+.|+.. ..+..|.+||+.+++. ..+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 336 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA 336 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence 22 399999999875433222210 0 012335799999988864 4466899999988654 3333
Q ss_pred cccc-----------ceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc-ccCccceeeee
Q 001396 656 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEKPL 710 (1086)
Q Consensus 656 ~~~~-----------~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~-~d~~i~vw~~~ 710 (1086)
.+.. .+..++| +|||+.++..+ .++...+|.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~----------------------spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSF----------------------TPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEE----------------------CTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCcccccccccccCCCCccC----------------------CCCCCEEEEEecCCCceeEEEEE
Confidence 3322 2333333 57887776544 56777788765
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.9e-17 Score=184.91 Aligned_cols=249 Identities=9% Similarity=0.086 Sum_probs=169.7
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEEcc-CceEEEEEcC-CCCCeEEEEEcCCCCC--EEEEEe-------------CC
Q 001396 797 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------DD 859 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~lasg~-------------~d 859 (1086)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46778999999999988885699999997 7776543321 112356689999 788 455553 68
Q ss_pred CeEEEEEcC-CceeEEEec----cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECC-CCceeeeeeeeccCCCccCCCC
Q 001396 860 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 860 g~v~iwd~~-~~~~~~~l~----~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 932 (1086)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466554443 24567999999999998887664 6789999998 66543222222111 01 24
Q ss_pred ceEEEEecCCCEEEEEe--CCeEEEEEcC--Cccce------ecccc---CCcc------CEEEEE-EeCCCCEEEEEEC
Q 001396 933 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCL------KQWFP---ISSV------PISQAT-FSCDCRMVFTSFV 992 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~~--d~~i~vwd~~--~~~~~------~~~~~---~h~~------~v~~l~-fs~dg~~l~s~~~ 992 (1086)
+..++|+|||++|+++. ++.+.+|++. +++.. ..+.. +|.. .+..++ |||||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998753 5789999875 45532 11111 2222 588999 9999999887764
Q ss_pred CC------cEEEEEcC-CCceeeeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCC-CcEEEEccCCC
Q 001396 993 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1057 (1086)
Q Consensus 993 Dg------~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~d-g~v~vw~~~~~ 1057 (1086)
+. +|.+|+++ +|++........... ..+..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 566543211000000 12335678884 57889888865 89999998643
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=7.9e-17 Score=178.57 Aligned_cols=297 Identities=10% Similarity=0.108 Sum_probs=202.6
Q ss_pred CCCceEEEEE-----eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC--
Q 001396 338 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 410 (1086)
Q Consensus 338 pdg~~lla~g-----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-- 410 (1086)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3666644443 2378999999999987654 3334444 8999999999999862
Q ss_pred --------CCEEEEEEecCCCccccceEecc---ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEE-ee
Q 001396 411 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 476 (1086)
Q Consensus 411 --------d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~~~~-~~ 476 (1086)
++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 56899999998876654322111 234567899999999 455544 368999999999988877 54
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-------EecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
.. +. ..+.+.+.. ...+++.+.||.+.+|++....... .+.....+ ..+.+++++..++..+. ++
T Consensus 150 ~~-~~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AA-GC-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GT-TE-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CC-Cc-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 32 21 223344432 3678889999999999986533222 11222222 23345678877776654 45
Q ss_pred eEEEEeCCCCee--eeEEeccc---c----cCCceEEEEEecCCCEEEEEEC-----------CCcEEEEEcCCCeeEEE
Q 001396 550 FLVEWNESEGAI--KRTYQGLQ---L----QHNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 550 ~i~iwd~~~~~~--~~~~~~~~---~----~~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 609 (1086)
.++++|+..+.. ...+.... . .......++|+|++++++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 799999875532 22221100 0 0011223789999998887643 34799999999999999
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC--CeeeeccccccceeeeEEccCC
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
+..+. +..++|+|||++|+++.. +.|.+||..++ +.+..+......-..+++.|++
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98664 689999999999998887 99999999999 8887765555556667776543
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=7.5e-17 Score=179.99 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=173.7
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEec-CCCccccceEeccccccEeEEEecCCCCcEEEEEEe-----------
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 456 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~----------- 456 (1086)
....+..++|+|||++|++++.+ .|.+|++. +++.... .....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33467889999999999999888 89999997 7654321 111111 236679999999853455553
Q ss_pred --CCCcEEEEeCC-CCceeEEee----cCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcC-CCceeE--Eec--CCC
Q 001396 457 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 523 (1086)
Q Consensus 457 --~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~--~~~--~~~ 523 (1086)
.++++.+|++. +|+....+. .+...+.+++|+ +||++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 576654443 245678889885 4777777765 46899999998 555432 233 235
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC--CCeeee---EEecccc----cCC------ceEEEE-EecCCCEE
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 587 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l 587 (1086)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988753 24578888654 565432 2222110 011 478999 99999998
Q ss_pred EEEECC-C-----cEEEEEcC-CCeeEEE---EcCCCCCCCCceEEEec---CCCEEEEEECC-CcEEEEECCCC
Q 001396 588 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 648 (1086)
Q Consensus 588 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 648 (1086)
+++..+ + .|.+|++. +++.... .... ......++|+| ||++|+++..+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876532 2 89999996 6665432 2222 12357899999 89999999864 89999998765
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=2.3e-17 Score=187.01 Aligned_cols=295 Identities=10% Similarity=-0.014 Sum_probs=192.6
Q ss_pred cceeeeeccCCCC-----ceEeeecCCCceEEEEEeccC--cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 318 KTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 318 ~~~~~~l~~h~~~-----V~~~~~spdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
...++.|..+... +..++|||||++++++...++ .|.+||+.+++... +..+.
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~~ 79 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEGK 79 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCSS
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecCC
Confidence 3444555554333 889999999997555554433 68888998887543 22232
Q ss_pred cc-EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeE-------------------EEecCCCCcE
Q 001396 391 VS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQI 450 (1086)
Q Consensus 391 ~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------v~~s~d~~~l 450 (1086)
.. ...++|||||++|++++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~- 155 (396)
T 3c5m_A 80 GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW- 155 (396)
T ss_dssp CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-
T ss_pred CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc-
Confidence 33 3347899999999999999999999999876432 12223332222 356788874
Q ss_pred EEEEE-----eCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEe
Q 001396 451 SVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 451 ~l~s~-----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~ 519 (1086)
++.. ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+.........
T Consensus 156 -~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 156 -EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp -HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred -eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 3332 45678999999998865544 46677888888552 45566665543 36888888765543333
Q ss_pred cCC-CCceEEEEEecCCCEEEEEeeCC-CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec-CCCEEEEEE-----
Q 001396 520 DAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----- 591 (1086)
Q Consensus 520 ~~~-~~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s----- 591 (1086)
... ...+..++|+|||++|+..+... ...+.|++||+.+++....... . ... +.|+| +++++++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC--
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcce
Confidence 321 23578899999999888775432 1225599999998876543322 1 123 88999 999888754
Q ss_pred -----------CCCcEEEEEcCCCeeEEEEcCCCCC--------CCCceEEEecCCCEEEEEEC-CCcEEEEEC
Q 001396 592 -----------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKILET 645 (1086)
Q Consensus 592 -----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~ 645 (1086)
.++.|++||+.+++........... ..+..++|+|+|+.|+..+. ++...+|.+
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999999888754333222110 02466899999998887775 455555543
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=3.2e-16 Score=173.62 Aligned_cols=313 Identities=10% Similarity=0.099 Sum_probs=211.1
Q ss_pred CccEEEEEE------cCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee------CCCCceeEEEEeCCCC
Q 001396 492 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 559 (1086)
Q Consensus 492 ~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~ 559 (1086)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455665553 4789999999988877776665444 8999999999998863 1223567999999999
Q ss_pred eeeeEEecccc---cCCceEEEEEecCCCEEEEEEC--CCcEEEEEcCCCeeEEE-EcCCCCCCCCceEEEecCC-CEEE
Q 001396 560 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 632 (1086)
Q Consensus 560 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 632 (1086)
+.+..+..... +......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 98888764320 1135677899999999999864 68999999999998887 65432 2335677765 6788
Q ss_pred EEECCCcEEEEECCC-CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 633 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 32221100 001111100
Q ss_pred cCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCC
Q 001396 712 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 791 (1086)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 791 (1086)
.. ..+.+++++..++..+.++.+.++++....... +..|........ ...
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~ 250 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN 250 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence 00 011124455555555666777777764322100 001111100000 000
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEe------------CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
-.......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 251 --~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 251 --WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp --CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred --cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 0011122378999988877653 2379999999999999998776 99999999 8889998886
Q ss_pred CeEEEEEcCCc--eeEEEeccccCCeEEEEEeCCCC
Q 001396 860 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 860 g~v~iwd~~~~--~~~~~l~~h~~~v~~l~~spdg~ 893 (1086)
+.|.+||..++ +.+.++..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877778889999999986
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=3.2e-14 Score=165.29 Aligned_cols=321 Identities=13% Similarity=0.152 Sum_probs=215.3
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC--CCeeEEEEcCCCCCCCCceEEEe
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.|.++|..+++.+..+... ..+..+.|+|||+++++++.++.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 678999999999999888753 357789999999999999999999999996 8888887765432 4789999
Q ss_pred ----cCCCEEEEEEC-CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 626 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 626 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
|||++++++.. ++++.++|..+.+.+..+......+
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~--------------------------------------- 289 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--------------------------------------- 289 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT---------------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc---------------------------------------
Confidence 69998888765 5899999988765554332100000
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 780 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1086)
++.
T Consensus 290 --------------------------------------~~~--------------------------------------- 292 (567)
T 1qks_A 290 --------------------------------------DEQ--------------------------------------- 292 (567)
T ss_dssp --------------------------------------TTC---------------------------------------
T ss_pred --------------------------------------ccc---------------------------------------
Confidence 000
Q ss_pred CCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEE--EEEcCCCCCeEEEEEcCCCCCEEEEE
Q 001396 781 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIG 856 (1086)
Q Consensus 781 ~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg 856 (1086)
. . .....+..+.+++++..+++.. .|.|.++|..+.+.+ ..+ ........+.|+| ++++++++
T Consensus 293 --~-~--------~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va 359 (567)
T 1qks_A 293 --E-Y--------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITA 359 (567)
T ss_dssp --C-E--------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEE
T ss_pred --c-c--------cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEE
Confidence 0 0 0011334455555544443332 366777776654322 222 2334567889999 78877665
Q ss_pred e-CCCeEEEEEcCCceeEEEecc-----ccCCeEEEEEeCCCCE-EEEEe-CCCcEEEEECCCCc-----eeeeeeeecc
Q 001396 857 M-DDSTILIYNARSSEVISKLEG-----HSKRVTGLVFSDALNI-LVSSG-GDAQIFVWDVDGWG-----IQTCRSLQTP 923 (1086)
Q Consensus 857 ~-~dg~v~iwd~~~~~~~~~l~~-----h~~~v~~l~~spdg~~-l~s~s-~dg~i~iwd~~~~~-----~~~~~~~~~~ 923 (1086)
. .++.|.++|+.+++++..+.- |.+.-.. .++|++.. +++.. .++.|.++|..+.. .+....+...
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 5 578999999999988776653 4332222 26887544 44543 46899999998732 1112233322
Q ss_pred CCCccCCCCceEEEEecCCCEEEEEe--------CCeEEEEEcCCc-----cce-eccc-------cCCccCEEEEEEeC
Q 001396 924 DGVMTLAPSETHIQFHKDQTRFLLVH--------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSC 982 (1086)
Q Consensus 924 ~~~~~~~~~v~~~~~s~dg~~l~~~~--------d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~ 982 (1086)
.+ .-..+.++|++++|.+.. .+.|.|+|+.+. ... ..+. ..-..++..+.|++
T Consensus 439 g~------g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 439 GG------GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp CS------CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred CC------CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 11 224578999999998853 358999999877 211 1111 11246889999999
Q ss_pred CCCEEEEEE-----CCCcEEEEEcCCCceeeeec
Q 001396 983 DCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 983 dg~~l~s~~-----~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
||+.+..+. .++.|.|+|..+++++.++.
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 999877663 37899999999999998886
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=6.7e-16 Score=187.96 Aligned_cols=293 Identities=10% Similarity=0.002 Sum_probs=194.6
Q ss_pred eeccCCCCceEeeecCCCceEEEEE--eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE------
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN------ 394 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------ 394 (1086)
.+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~ 77 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEY 77 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGT
T ss_pred HHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCcccccccccc
Confidence 4678999999999999875 35555 4578899999654443332 445555555
Q ss_pred ---EEEEC--CCCCE-EEEEeC-CCEEEEEEec--C-CCccccceEecc-----ccccEeEEEecCCCCcEEEEEEeCC-
Q 001396 395 ---RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD- 458 (1086)
Q Consensus 395 ---~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~v~~s~d~~~l~l~s~~~d- 458 (1086)
..+|+ |||++ ||.++. +..|.+|++. + ++ .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 78 ~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~ 151 (662)
T 3azo_A 78 SGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEF 151 (662)
T ss_dssp CCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEE
T ss_pred CCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecc
Confidence 55565 99999 887754 4566666665 3 43 22 2444 677899999999999 67766665
Q ss_pred ---------CcEEEEeCCC------CceeEEee-cCCcceEEEeecccCCccEEEEEEcCC--------eEEEEEcC-CC
Q 001396 459 ---------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-SL 513 (1086)
Q Consensus 459 ---------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg--------~i~vwd~~-~~ 513 (1086)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.++ .|++||+. ++
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred cCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 5899999988 44 45555 56667777777 55888998887653 79999998 45
Q ss_pred ---ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCC-----ceEEEEEecCCC
Q 001396 514 ---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAKD 585 (1086)
Q Consensus 514 ---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~ 585 (1086)
........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|+|++.
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 229 RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp CEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred cccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence 333344444678899999999995555433 3345789999877776544443221000 156788999999
Q ss_pred EEEEEECCCcEEEE--EcCCCeeEEEEcCCCCCCCCceEEEecCCCE--EEEEECCC--cEEEEECCCCCee
Q 001396 586 QILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 651 (1086)
Q Consensus 586 ~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~ 651 (1086)
.+++++. +.+++| |+.+++ +..+..+. ..+..+ +++++.. ++.++.+. .|.++++.+++..
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 9999988 999999 555565 55555442 234444 1444443 33444454 4555566666543
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=7.1e-14 Score=162.34 Aligned_cols=246 Identities=11% Similarity=0.008 Sum_probs=160.0
Q ss_pred CCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEE
Q 001396 338 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 417 (1086)
Q Consensus 338 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 417 (1086)
|.+ +++++...+++|.++|..+++.+.... ....+..++|||||+++++++.++.|.+|
T Consensus 165 ~~~-~~~V~~~~~~~V~viD~~t~~v~~~i~--------------------~g~~p~~v~~SpDGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 165 LEN-LFSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp GGG-EEEEEETTTTEEEEEETTTCCEEEEEE--------------------CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCc-eEEEEeCCCCeEEEEECCCCeEEEEEe--------------------CCCCccceEECCCCCEEEEEcCCCeEEEE
Confidence 444 467888889999999999998876421 22456799999999999999999999999
Q ss_pred Eec--CCCccccceEeccccccEeEEEec----CCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC
Q 001396 418 AYH--GGSDARQQLEIDAHVGNVNDLAFS----APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 418 d~~--~~~~~~~~~~~~~h~~~v~~v~~s----~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
|+. +++.+. .+.... ....++|+ |||++ ++++...+++|.|+|..+.+.+..+......+....+++
T Consensus 224 D~~~~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p-- 296 (567)
T 1qks_A 224 DLWMKEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP-- 296 (567)
T ss_dssp ETTSSSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES--
T ss_pred ECCCCCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC--
Confidence 996 665444 333322 35789999 69995 455556679999999999988877652211000000000
Q ss_pred CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 571 (1086)
...+..+..++++..++.... ..+.|.++|..+.+.........
T Consensus 297 -------------------------------~~rva~i~~s~~~~~~vv~~~---~~g~v~~vd~~~~~~~~v~~i~~-- 340 (567)
T 1qks_A 297 -------------------------------EPRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA-- 340 (567)
T ss_dssp -------------------------------CCCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--
T ss_pred -------------------------------CCceEEEEEcCCCCEEEEEec---CCCeEEEEecCCCccceeeeeec--
Confidence 112334555555554443321 25567777766543222111111
Q ss_pred CCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcC-CCCCCCCceEE-EecCCCEEEEEE--CCCcEEEEECC
Q 001396 572 HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC-FNKNGTLLAVIA--NENRIKILETP 646 (1086)
Q Consensus 572 ~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~-~s~~~~~l~~~~--~dg~i~iw~~~ 646 (1086)
......+.|+|++++++++. .++.|.++|+.+++.+..+.. ......-.... ++|++..+.+.+ .++.|.+++..
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 14567889999999988765 678999999999998888765 22111112333 578755554433 35789998877
Q ss_pred C
Q 001396 647 E 647 (1086)
Q Consensus 647 ~ 647 (1086)
+
T Consensus 421 ~ 421 (567)
T 1qks_A 421 P 421 (567)
T ss_dssp T
T ss_pred C
Confidence 5
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=2.3e-15 Score=166.97 Aligned_cols=262 Identities=9% Similarity=0.103 Sum_probs=177.8
Q ss_pred CceEeeecCCCceEEEEE--------eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 330 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
.+...++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5667777 898755442 225779999998876432 2 46788999999
Q ss_pred CCEEEEEeCC---C--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-------------------
Q 001396 402 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 457 (1086)
Q Consensus 402 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~------------------- 457 (1086)
|++||+++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence 9999988653 3 47888888775433 223334 999999999994 554442
Q ss_pred --------CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCC-------eEEEEEcCCCceeEEecCC
Q 001396 458 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 522 (1086)
Q Consensus 458 --------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~ 522 (1086)
...|.+||+.+++.+..+.. . .+..++|+ +|| +++++..++ ...+|.+++++ ...+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC
Confidence 25799999999887555554 3 67778885 477 777776542 44555555333 3333223
Q ss_pred CCceEEEEEecCCCEEEEEeeCCC----CceeEEEEeCCCCeeeeEEecccccCCceEE-EEEecCCCEEEEEECCCcEE
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~ 597 (1086)
..+..+ +|||+.|+..+.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988764321 245789999 565544444433 66775 8999 88 888899999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcE-EEEECC
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 646 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 646 (1086)
+| +.+++....... ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 886665444432 23578899999 677777777665 777765
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=5.6e-16 Score=175.57 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=166.3
Q ss_pred EEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccE-eEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 393 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
+.+++|||||++||.+... ..|.+||+.+++... +..+...+ ..+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6788999999999887543 478899998876432 33333333 3488999999 788888888999999999
Q ss_pred CceeEEeecCCcceEE---Eee--------------cccCCccEEEEE-----EcCCeEEEEEcCCCceeEEecCCCCce
Q 001396 469 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 526 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~---~~~--------------~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~i 526 (1086)
++.......+...... +++ ..++++..++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876666545443222 111 123344444433 35668999999887665444 345578
Q ss_pred EEEEEec-CCCEEEEEeeCCCC--ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEE
Q 001396 527 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 598 (1086)
Q Consensus 527 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~i 598 (1086)
..+.|+| +++.|+..+..... ...|++||+.+++......... ...+..+.|+|+|++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642110 1579999987765433322111 1357889999999988876543 44999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEE----------------CCCcEEEEECCCCCe
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 650 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~ 650 (1086)
||+.+++......... .. ++|+| +|+++++++ .++.|.+||+.++..
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887654433221 23 89999 999888765 347899999987653
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=7.4e-15 Score=160.92 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=184.9
Q ss_pred CCceEeeecCCCceEEEEEecc------------------------CcEEEEecCCCceeeeeeeeeeeccccceeeeee
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 384 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1086)
+.|.+++++|+|+ ++++.+.+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4799999999998 67777766 47999999888865420
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC-ccccceEe---------ccccccEeEEEecC-CCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 453 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~v~~s~-d~~~l~l~ 453 (1086)
-.++-..+..++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 12455678999999999988888889999999986542 222 23 24455789999999 677 677
Q ss_pred EEe-CCCcEEEEeCCCCceeEEeecCC----------cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--
Q 001396 454 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 520 (1086)
Q Consensus 454 s~~-~d~~i~iwd~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-- 520 (1086)
+.+ .++.|++|| .+|+.+..+.... .....+++.++ .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 7788877774322 33788888542 26788888889999999998777776663
Q ss_pred CCCCceEEEEEecCCCEEEEEee---CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGT---SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.....+..++|+| +..+...+. .......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 444443321 112245799999999999888753222336789999999997777778899999
Q ss_pred EEEcCC
Q 001396 598 IWDMNK 603 (1086)
Q Consensus 598 iwd~~~ 603 (1086)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=7.8e-15 Score=160.76 Aligned_cols=245 Identities=12% Similarity=0.086 Sum_probs=182.2
Q ss_pred CCCeeEEEeecCCCEEEEEeCC-------------------------eEEEEEccCceEEEEEc-CCCCCeEEEEEcCCC
Q 001396 796 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 849 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 849 (1086)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+-.....+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887643 69999999999887765 3446789999999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCce-eEEEe---------ccccCCeEEEEEeC-CCCEEEEEe-CCCcEEEEECCCCceeee
Q 001396 850 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 917 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~v~~l~~sp-dg~~l~s~s-~dg~i~iwd~~~~~~~~~ 917 (1086)
++++++...++.|++||..... .+..+ .++......++++| ++.++++.+ .++.|++|+.+. ....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence 8899988889999999986542 45555 34556789999999 888888886 689999999544 3221
Q ss_pred eeeecc-C------CCccCCCCceEEEEecC-CCEEEE-EeCCeEEEEEcCCccceeccc-cCCccCEEEEEEeCCCCEE
Q 001396 918 RSLQTP-D------GVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 918 ~~~~~~-~------~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l 987 (1086)
.+... . +.. .....++++|+ |.++++ ..++.|++|+..+|+.+..+. ..+...+..++|+| |..+
T Consensus 180 -~~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~ 254 (329)
T 3fvz_A 180 -QWGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLF 254 (329)
T ss_dssp -EECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEE
T ss_pred -EeccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEE
Confidence 11111 0 111 24789999999 555555 367889999999888877653 34567889999999 4333
Q ss_pred EEE-------ECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 988 FTS-------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 988 ~s~-------~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
++. ..+..|++|++.+++.+..+.... .....+..++++| ++.++++...++.|++|++..
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 333 344589999999999987764211 1223567899999 678888888999999999854
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=2.5e-14 Score=153.63 Aligned_cols=242 Identities=10% Similarity=0.100 Sum_probs=175.9
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcC------CCCCeEEEEEc-CCCCCEEEEEeC-CCeEEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 865 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~iw 865 (1086)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 455688999999999887765 6899999987 666666642 33578999995 5 7777776643 8899999
Q ss_pred EcCCceeEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 866 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 866 d~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||...... ..+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---HKFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---EEEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE---EEeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677776664 3456789999999999888888889999999764221 112111 111 24789999999997
Q ss_pred EEEE-eCCeEEEEEcCCccceeccc-cCCccCEEEEEEeCCCCEEEEEECCC-cEEEEEcCCCceeeeeccccccCCCCc
Q 001396 945 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1021 (1086)
Q Consensus 945 l~~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~~~Dg-~v~vWd~~~~~~~~~~~~~~~~~~~~~ 1021 (1086)
+++. .++.|.+||.. ++.+..+. .++...+..++++++|.++++...++ .|.+|+. .++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 55444432 22346789999999999888887776 9999995 56666665421
Q ss_pred cCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1022 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1022 ~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.....+.+++++| +++++++ +.|++|++|++....
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 1122466899999 6776665 789999999986543
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=1.2e-14 Score=176.89 Aligned_cols=249 Identities=10% Similarity=-0.000 Sum_probs=176.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEE--eCCCEEEEEEecCCCccccceEeccccccEe---------EEEec--CCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 452 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~v~~s--~d~~~l~l 452 (1086)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66788999999999887777777 558899999975444333 4556666666 66666 999941 4
Q ss_pred EEEe-CCCcEEEEeCC--CCceeEEeec-----CCcceEEEeecccCCccEEEEEEcC----------CeEEEEEcCC--
Q 001396 453 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDS-- 512 (1086)
Q Consensus 453 ~s~~-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~vwd~~~-- 512 (1086)
+..+ .+..|.+|++. ++.....+.. |...+..++|+ +||+.|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4433 35677777765 2044556655 66778888885 577899988877 5899999987
Q ss_pred ----CceeEEec-CCCCceEEEEEecCCCEEEEEeeCCC----CceeEEEEeCC-CC---eeeeEEecccccCCceEEEE
Q 001396 513 ----LGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVH 579 (1086)
Q Consensus 513 ----~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~ 579 (1086)
+.. ..+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++. ..+..+.
T Consensus 173 ~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~ 248 (662)
T 3azo_A 173 AADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAE 248 (662)
T ss_dssp TTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEE
T ss_pred cccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceE
Confidence 443 4444 45567888999999999998875432 13689999999 57 4444444434 6889999
Q ss_pred EecCCCEEEEEECCC--cEEEEEcCCCeeEEEEcCCCCC------CCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 580 FDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 580 ~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
|+|||+.+++++.++ .|++||+.+++.......+... ..+..++|+|++++++++.. +.+++|.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777788 5666777677655443322211 11467899999999999988 99999844
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=3.4e-10 Score=139.97 Aligned_cols=585 Identities=9% Similarity=0.017 Sum_probs=339.5
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|+++.-.++|. |-.|+.+| +..||-.+ . +.|...... . -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGN--MWFATYDG-VNKYDGYA---F-----TVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSC--EEEEETTE-EEEECSSC---E-----EEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCC--EEEeecCc-CcccCCCc---e-----EEEeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence 3799999999996 34566655 56666322 1 111110000 0 000236799999999987655 5
Q ss_pred eCCCEEEEEEecCCCccccceEeccccc----cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC-Ccc-e
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 482 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~-v 482 (1086)
+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.+..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 5566 899998775422 1221111 288898888887 333 444 55899998776533211111 112 6
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
.++... .++ .|..++.++-|..|+..+.+..... ......|.++...++|.+.+.... .-+..||..+++.
T Consensus 176 ~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~-----~Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEG-----AGLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBS-----SCEEEEETTTTEE
T ss_pred EEEEEC--CCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECC-----CCeEEEeCCCCeE
Confidence 776653 344 4555676656888987765543321 123456888888888876665421 1288999887765
Q ss_pred eeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----CCCCCCceEEEecCCCEEE
Q 001396 562 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 562 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~ 632 (1086)
....... ......|.++...++|.. ..|+.+ -|.+||..++......... -....|.++...++|. |.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4332211 112356999998888764 445555 5899998887654432211 1123577888888886 55
Q ss_pred EEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeec
Q 001396 633 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 712 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~ 712 (1086)
+|+.++-|..|+..+.... .+.. . +.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~--------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY--------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence 5677677887765433111 0000 0 00
Q ss_pred CCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCC
Q 001396 713 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 792 (1086)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 792 (1086)
+.......|.++...++|... .++.++-+..|+...... ..+....+. .. ..
T Consensus 351 ----------~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~--- 402 (795)
T 4a2l_A 351 ----------KNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RG--- 402 (795)
T ss_dssp ----------SSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCE------------EEECCC--------C---
T ss_pred ----------CCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cC---
Confidence 000023468888888888744 455555566665432211 001000000 00 00
Q ss_pred CCCCCCeeEEEeecCCC-EEEEEeCCeEEEEEccCceEEEEEc----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001396 793 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 867 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 867 (1086)
-....|.+++..++|. +.+...++.+.+||..+++...... .....|.++...+ ++++.+ |+.+ -+.+||.
T Consensus 403 -l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~ 478 (795)
T 4a2l_A 403 -IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP 478 (795)
T ss_dssp -CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred -CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence 0245789999999998 5554446789999998876544322 1345789999988 676655 4444 5899998
Q ss_pred CCceeEEEecc------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecc-CCCccCCCCceEEEEec
Q 001396 868 RSSEVISKLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 868 ~~~~~~~~l~~------h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~ 940 (1086)
.+++....... +...|.++...++|++.+... .| |..|+..++.. . +... .........|.++...+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~ 552 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI-Q---KASILPVSNVTKLFTNCIYEAS 552 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE-E---ECCCSCSCGGGGSCEEEEEECT
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE-E---EecCCCCCCCCCCeeEEEEECC
Confidence 87765332211 235799999999998877554 44 88899877543 1 1100 00001113688999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCccceec-cccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCC
Q 001396 941 DQTRFLLVHETHLAIYEAEELTCLKQ-WFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1018 (1086)
Q Consensus 941 dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~ 1018 (1086)
+|.+.+.+.. .+..||..+++...- ...+ ....|.++...++|.+.+++ . +-+..|+..++... .+....-++.
T Consensus 553 ~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~ 628 (795)
T 4a2l_A 553 NGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQS 628 (795)
T ss_dssp TSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSC
T ss_pred CCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCcc
Confidence 9997776654 788999877654321 0111 14568899999999877755 4 45778898876543 3332222222
Q ss_pred CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1019 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1019 ~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
. .+...++...+ +| .|..|+.+|-+ .++.
T Consensus 629 ~----~f~~~~~~~~~-~G-~l~~g~~~Gl~-~~~p 657 (795)
T 4a2l_A 629 N----QFNTASYCRTS-VG-QMYFGGINGIT-TFRP 657 (795)
T ss_dssp S----CEEEEEEEECT-TS-CEEEEETTEEE-EECG
T ss_pred c----cCccCceeECC-CC-eEEEecCCceE-EEcH
Confidence 1 22224566666 44 46667777754 4443
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=5.5e-14 Score=150.92 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=178.5
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE-CCCCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 403 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~ 403 (1086)
.+|-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+..... .....+|...+..+++ .+++.
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999997 68888888999999987 554432110 0001245567899999 57887
Q ss_pred EEEEEeC-CCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee--cCC
Q 001396 404 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 479 (1086)
Q Consensus 404 ~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~ 479 (1086)
++++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. .+.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78999999 4555443 232 3445789999999998 7787778899999994 567666664 344
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--CCceEEEEEecCCCEEEEEeeCCCCce-eEEEEeC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 556 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~-~i~iwd~ 556 (1086)
..+..+++. +++.++++.+.++.|++||.. ++....+... ...+..++++++|+++++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVN--DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEEC--SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEEC--CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 568888885 467777777889999999974 3444445433 256889999999988877653 43 7999995
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
+++.+..+..+. ....+..++++|+|+.+++ +.++.|++|++...
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566667776543 1234789999999976555 67999999998653
No 181
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=1.2e-10 Score=144.08 Aligned_cols=535 Identities=8% Similarity=0.029 Sum_probs=320.6
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|.++...++|.. -.|+. +.+..||..+++...- ... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~l--WigT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGRV--WIGTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSCE--EEEES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCCE--EEEeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence 47999999999973 34455 4589999887653321 000 00000118888888888766544
Q ss_pred eCCCEEEEEEecCCCccccceEeccc-ccc-EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCCcceEEE
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 485 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~ 485 (1086)
.+ .+.+||..+++..... .++ ... |.++...+++. +..++.++.+..||..+++..... ..+...|.++
T Consensus 149 -~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -PE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -TT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -CC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 44 4899998765422110 011 123 88888888886 334565556999998777654321 1234567777
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC-------CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
... .++ .|..++.++-+..||..+.+....... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGT 291 (795)
T ss_dssp EEE--ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTT
T ss_pred EEc--CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCC
Confidence 653 344 455566555588898776554332221 235689999998888666542 1 288999887
Q ss_pred CeeeeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC--C--CCCCCceEEEecCCCE
Q 001396 559 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 630 (1086)
Q Consensus 559 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 630 (1086)
+......... ......|.++...++|. |..|+.++-|..|+..++......... . ....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 7654332211 11236799999988875 666777788999988765433221111 0 123477888888776
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|.+|+.++-|..|+..++......... ...
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~---------------------------------~~~----------------- 399 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQE---------------------------------DES----------------- 399 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCC---------------------------------CCc-----------------
Confidence 555777777888887654321110000 000
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecC
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 790 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 790 (1086)
. . ......|.++...++|..+.+++.++-+..++...+.. ..+.....
T Consensus 400 -------~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~-------- 447 (795)
T 4a2l_A 400 -------A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS-------- 447 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred -------c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence 0 0 00234578888888887455555555566666433211 11110000
Q ss_pred CCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001396 791 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI 864 (1086)
Q Consensus 791 ~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i 864 (1086)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++++.+ |+. +-|..
T Consensus 448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~ 521 (795)
T 4a2l_A 448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV 521 (795)
T ss_dssp --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence 01345789999999998777665 5688999887765433211 236789999998 776666 444 45889
Q ss_pred EEcCCceeEEEec-------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEE
Q 001396 865 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 937 (1086)
Q Consensus 865 wd~~~~~~~~~l~-------~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 937 (1086)
||..+++. .+. .....|.++...++|++.+... .| |..||..++... ......+... ..|.++.
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~---~~~~~~gl~~--~~i~~i~ 592 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK---RYNTTNGLPN--NVVYGIL 592 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE---EECGGGTCSC--SCEEEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE---EeCCCCCCch--hheEEEE
Confidence 99887765 222 1345799999999998777554 35 888998775432 2222222222 3588899
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCccceecccc--CC-ccCE--EEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 938 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--IS-SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 938 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h-~~~v--~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
..++|.+.+++ ++.|..|+..+++... +.. +- ...+ .++...++|.+++ |+.+|. ..++..
T Consensus 593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~~~p~ 658 (795)
T 4a2l_A 593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGINGI-TTFRPE 658 (795)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEE-EEECGG
T ss_pred ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCce-EEEcHH
Confidence 99999877766 5668888987665432 111 11 1222 5677788887666 667774 445543
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=7.9e-14 Score=153.51 Aligned_cols=274 Identities=10% Similarity=0.027 Sum_probs=188.9
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|.+++|+|++.. ++..+.++.++.| .++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 36889999999975 6666778899999 2333222 44566778999999999988888
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEee--cCCcce
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 482 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~~--~h~~~v 482 (1086)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||.++++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876432 1224567899999999998 66766655 689999988877654443 244568
Q ss_pred EEEeecccCCccEEEEEEc------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 483 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
..+++.+ ++.++++... .+.|..+|....+.... ......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 6666666543 24555555544333222 222335788999999997765542 1457999998
Q ss_pred CC-CeeeeEEe-----cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC----CCCCceEEEec
Q 001396 557 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 626 (1086)
Q Consensus 557 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 626 (1086)
.+ +.....+. ... ....+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 33332211 111 0136788999999988888778899999998 5666666654321 11478999999
Q ss_pred CCCEEEEEECCC
Q 001396 627 NGTLLAVIANEN 638 (1086)
Q Consensus 627 ~~~~l~~~~~dg 638 (1086)
+++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 988887766654
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=8.4e-14 Score=170.13 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=176.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCC-----EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 460 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-- 460 (1086)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875542 12 222367899999999 5666666655
Q ss_pred --------------EEEEeCCCCcee--EEeec--CCcceEEEeecccCCccEEEEEEc-----CCeEEEEEcCC-----
Q 001396 461 --------------IKVWDAVTGSRT--YSFEG--HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 512 (1086)
Q Consensus 461 --------------i~iwd~~~~~~~--~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~----- 512 (1086)
|++|++.++... ..+.. |...+..+.| ++||++|+.++. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999888632 22232 4555777777 557788887765 67899999986
Q ss_pred -Cc-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEE
Q 001396 513 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 588 (1086)
Q Consensus 513 -~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 588 (1086)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++.. .+.+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 42 34444444444444 58899999888775443467899999988742 34444443 013678889997777777
Q ss_pred EEECCCc--EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCC
Q 001396 589 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 649 (1086)
Q Consensus 589 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 649 (1086)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+++..||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888875 566787778877777655 334677889999877664432 4789999998765
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=1.3e-13 Score=148.80 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=178.2
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3345556666688999999999867889999999999999887 322 3346678999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEE----e-------------CCCc
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITC----G-------------DDKT 460 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~----~-------------~d~~ 460 (1086)
+|+|+++++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 99999888877778999999988764321111111 123567899999998 67763 2 1345
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCce---eEEecCCCCceEEEEEecCCC
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~---~~~~~~~~~~i~~~~~s~d~~ 536 (1086)
|..++.. ++ +..+..+......++|+ +++..+++.+.++.|.+|++. .+.. ...+......+..++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 6666654 44 44455566777889884 466777777888999999987 3333 223333445567899999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEE-ecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
+.++. .+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+.++
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 77665 2359999986 77777777766 5 889999 5888999998875 455566665543
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=7.5e-14 Score=170.56 Aligned_cols=249 Identities=10% Similarity=0.011 Sum_probs=173.3
Q ss_pred cCCCCceEeeecCCCceEEEEEec-cC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTN-VG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~-dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
+|...+..++|||||++ ||.++. +| .|++||+.+|+.+.. . + ....+..++|||
T Consensus 122 ~~~~~~~~~~~SPDg~~-la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wsp 180 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEY-FAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTH 180 (710)
T ss_dssp TSCEEEEEEEECTTSSE-EEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECT
T ss_pred CCCEEEEEEEECCCCCE-EEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEe
Confidence 45557889999999996 554444 33 899999999987642 1 1 112366799999
Q ss_pred CCCEEEEEeCCCE----------------EEEEEecCCCcccc-ceEeccccccEeEEEecCCCCcEEEEEEeC-----C
Q 001396 401 DGSLLGVAYSKHI----------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D 458 (1086)
Q Consensus 401 dg~~las~~~d~~----------------i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-----d 458 (1086)
||+.|+.++.++. |++|++.+++.... ......|...+..++|+|||+. |+..+. +
T Consensus 181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~ 258 (710)
T 2xdw_A 181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPV 258 (710)
T ss_dssp TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSC
T ss_pred CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCc
Confidence 9999999987765 99999988763211 1112235566889999999995 444432 5
Q ss_pred CcEEEEeCCC------Cc-eeEEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCce--eEEecCCC--
Q 001396 459 KTIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG-- 523 (1086)
Q Consensus 459 ~~i~iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~--~~~~~~~~-- 523 (1086)
..|++||+.+ +. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 7899999987 54 466676676666543 433 55566655543 3699999987642 23333333
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-E---CCCcEEEE
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIW 599 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s---~dg~i~iw 599 (1086)
..+..++|++++.++++... ++...|++||+.+|+.++.+..+. ..+..+.++|+++.++.. + ..++|+.|
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred CeEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence 36788999877766666654 335678899987888777777655 778899999998877643 2 45789999
Q ss_pred EcCCCe
Q 001396 600 DMNKVQ 605 (1086)
Q Consensus 600 d~~~~~ 605 (1086)
|+.+++
T Consensus 411 d~~tg~ 416 (710)
T 2xdw_A 411 DLTKEE 416 (710)
T ss_dssp ETTSSS
T ss_pred ECCCCc
Confidence 998877
No 186
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=3.9e-09 Score=130.18 Aligned_cols=592 Identities=13% Similarity=0.085 Sum_probs=337.7
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|+++.-.++|. |=.|+.+| +..||-.+ . +.|....... .. ..-....|.++...++|..|-.|
T Consensus 19 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGF--LWFATEEG-LNKFDGTR---F-----ITYYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSC--EEEEESSC-EEEECSSS---E-----EEECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCC--EEEccCCc-CccccCCc---e-----EEEEcCCCCC--cc--ccccccccceEEEcCCCCEEEEE
Confidence 4799999999996 44556655 66677432 1 1111100000 00 00013569999999988845567
Q ss_pred eCCCEEEEEEecCCCccccceE-ecc---ccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-----
Q 001396 409 YSKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG----- 477 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~-~~~---h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 477 (1086)
+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.|..+|..+++... +..
T Consensus 84 t~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~ 159 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVPA 159 (781)
T ss_dssp ESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCTT
T ss_pred eCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCcccC
Confidence 7774599999887542210000 000 123688888877 665 4445545568899987765432 321
Q ss_pred -CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-------CCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 478 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 478 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
....|.++... .++ .|..++.++-|..||..+.+...... .....|.++...++|.+.+... .
T Consensus 160 l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 12456766653 344 56667777668889877654432211 1235688898888888766542 2
Q ss_pred eEEEEeCCCCeeeeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc-------CC-----
Q 001396 550 FLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG----- 613 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~----- 613 (1086)
-+.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 3899998777654322211 11235788998887764 6667765678999988765432211 10
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcc
Q 001396 614 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 693 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~ 693 (1086)
-....|.++...++|. |-+|+.++-|..++........ ... . +..
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~----------------------~~~- 354 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------S----------------------PTQ- 354 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------------------C-
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------C----------------------ccc-
Confidence 1123477788888776 5566666677777765432111 100 0 000
Q ss_pred cceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccC
Q 001396 694 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 773 (1086)
Q Consensus 694 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 773 (1086)
. .+.......|.++...++|... .++.++-+..|+......
T Consensus 355 ---------------------~------~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~----------- 395 (781)
T 3v9f_A 355 ---------------------M------NESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA----------- 395 (781)
T ss_dssp ---------------------C------CSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE-----------
T ss_pred ---------------------c------ccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE-----------
Confidence 0 0000023457888888888744 445444466665432110
Q ss_pred CceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc--CCCCCeEEEEEcCCCCC
Q 001396 774 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 774 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~ 851 (1086)
..+.. ........|.+++..++|.+.+...++.+..++..+++...... .....|.++...+ +++
T Consensus 396 -~~~~~-----------~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~ 462 (781)
T 3v9f_A 396 -IYNKE-----------NRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK 462 (781)
T ss_dssp -ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE
T ss_pred -EEccC-----------CCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC
Confidence 00000 00014567889999888887775556778899988776543322 1346799999887 665
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccc-----cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 926 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 926 (1086)
+.+ |+. +-|..||..+++........ ...|.++...++|++.+.....| |..||..++.... +....+.
T Consensus 463 lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~l 536 (781)
T 3v9f_A 463 IWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEGF 536 (781)
T ss_dssp EEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTTC
T ss_pred EEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCCC
Confidence 544 565 55899998876543322212 45799999999998777544355 7788887654222 2222221
Q ss_pred ccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecc-ccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 927 MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW-FPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 927 ~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~-~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
. ...|.++...++|.+.+++..|-+..||..+++...-- ..+ ....|.++...++|.+.++ +..| |..++..++
T Consensus 537 ~--~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 537 C--SNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKK 612 (781)
T ss_dssp S--CSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTT
T ss_pred C--CCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCC
Confidence 1 24688999999999887766444488888766532210 111 1346788888989987664 4555 777888766
Q ss_pred ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1005 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
... .+....-++.. .....++...+ +| .|..|+.+|- ..++.
T Consensus 613 ~~~-~~~~~dGl~~~----~f~~~~~~~~~-~G-~l~~g~~~Gl-~~f~p 654 (781)
T 3v9f_A 613 CFY-TYDHSNNIPQG----SFISGCVTKDH-NG-LIYFGSINGL-CFFNP 654 (781)
T ss_dssp EEE-EECGGGTCCSS----CEEEEEEEECT-TS-CEEEEETTEE-EEECS
T ss_pred ceE-EecccCCcccc----ccccCceEECC-CC-EEEEECCCce-EEECh
Confidence 543 33322222221 12234566666 44 4666778874 44554
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=4.3e-13 Score=148.56 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=152.9
Q ss_pred CeeEEEeecCCCEEEEEeC----Ce--EEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC------------
Q 001396 798 AVPCFALSKNDAYLFSASG----GV--ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD------------ 859 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~d----g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d------------ 859 (1086)
.+..++|||||++|+..++ +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 4678999999999998862 33 888888888776555433 3 99999999 88888877632
Q ss_pred ---------------CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC-------cEEEEECCCCceeee
Q 001396 860 ---------------STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA-------QIFVWDVDGWGIQTC 917 (1086)
Q Consensus 860 ---------------g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg-------~i~iwd~~~~~~~~~ 917 (1086)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78899999999 877776542 3455555443321
Q ss_pred eeeeccCCCccCCCCceEEEEecCCCEEEE-EeC--------CeEEEEEcCCccceeccccCCccCEEE-EEEeCCCCEE
Q 001396 918 RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE--------THLAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMV 987 (1086)
Q Consensus 918 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l 987 (1086)
.+... . .+..+ ||||++|+. +.+ ..|.+|| +++. ..+..+|...+.. +.|+ || ++
T Consensus 212 -~l~~~---~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 212 -KMFEK---V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp -EEEEE---E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred -EeccC---c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 22111 1 23333 999999887 422 3577888 5554 3345566778886 9999 98 99
Q ss_pred EEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE-EEEccC
Q 001396 988 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV-YVIEPN 1055 (1086)
Q Consensus 988 ~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v-~vw~~~ 1055 (1086)
++++.++.+++| +.+++...... . .....+++|+| ..+++++.++.. .+|.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g~~~~~~~------~-----~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEIKPIAK------G-----RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESSSEEEEEC------S-----SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCCceEEEec------C-----CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999999 88665532221 0 12345678887 577777777765 777764
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=1.1e-13 Score=168.36 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=167.4
Q ss_pred cCCCccEEEEEECCCCCEEEEE-----eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc-
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT- 460 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~- 460 (1086)
.+|...+..++|||||++||.+ +.+.+|++||+.+++.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3566789999999999999954 34568999999998754110 11111 126899999999 6777777765
Q ss_pred ------------EEEEeCCCCce----eEEeecCCcceEEEeecccCCccEEEEEEcCC----eEEEEEcCCCceeEEec
Q 001396 461 ------------IKVWDAVTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 461 ------------i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~ 520 (1086)
|++|++.++.. +.....|...+..+.| ++||++|+.++.++ .|.+|+..++... .+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence 99999998873 2333345567778887 45778888777665 6666765444433 333
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee---eeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.+...+....+ ++|+ ++..+.....+..|++||+.++.. ...+..+. ...+..++|+ ++..+++...|+..+
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 33344455555 6777 655543333468899999988753 33333321 2467888888 667778888899888
Q ss_pred EEEcC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCC
Q 001396 598 IWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 649 (1086)
Q Consensus 598 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 649 (1086)
+|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88665 455555555432 234667888999987774433 4789999998775
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=2.2e-13 Score=148.77 Aligned_cols=278 Identities=10% Similarity=-0.016 Sum_probs=191.5
Q ss_pred ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccc
Q 001396 349 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 428 (1086)
Q Consensus 349 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 428 (1086)
.+++|.+||..+++..... +... . -.........+++. ++++.++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~------n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRA------N---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHH------H---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhhh------c---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999998865421 0000 0 00122446677774 455555666678999999999886653
Q ss_pred eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC-----cceEEEeecccCCccEEEEEE-cC
Q 001396 429 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 502 (1086)
Q Consensus 429 ~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~d 502 (1086)
+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 345688999999985 66666579999999999999887776433 14456666 2 334444443 48
Q ss_pred CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC------ceeEEEEeCCCCeeeeEEecccccCCceE
Q 001396 503 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 576 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 576 (1086)
+.|.++|..+.+....+... .....++++|+|++++++..+... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999998877666543 345678999999977766432110 2689999999998887775432 13688
Q ss_pred EEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEE----ECCCcEEEEECCCCCee
Q 001396 577 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 651 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~ 651 (1086)
.++++|++++++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999999887642111111123467899999 45555555 568899999998 7777
Q ss_pred eecc
Q 001396 652 DAAG 655 (1086)
Q Consensus 652 ~~~~ 655 (1086)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=1.7e-12 Score=140.49 Aligned_cols=204 Identities=13% Similarity=0.065 Sum_probs=143.3
Q ss_pred eeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEE
Q 001396 799 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 874 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 874 (1086)
...++|+|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34688999999888775 47899999999999998864321 233443 667777888899999999876 55433
Q ss_pred Eecccc----CCeE-EEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeeeeeecc------CCCccCCCCceEEEEecCC
Q 001396 875 KLEGHS----KRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 875 ~l~~h~----~~v~-~l~~s-pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg 942 (1086)
....+. .++. ..+|. ++|++++ .+.+|.|.+.|+.++.......+..+ .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 221121 2222 24664 6775554 56689999999987543222222211 11111 245568899999
Q ss_pred CEEEEEe-----------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEE-ECCCcEEEEEcCCCceeee
Q 001396 943 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1009 (1086)
Q Consensus 943 ~~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~-~~Dg~v~vWd~~~~~~~~~ 1009 (1086)
+.+.+.. .+.|.++|+++++.+..+..+ .++.++.|++|++ +|+++ ..++.|.|+|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 256999999999999887664 4788999999997 66665 4589999999999999988
Q ss_pred ec
Q 001396 1010 IL 1011 (1086)
Q Consensus 1010 ~~ 1011 (1086)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=9.5e-13 Score=139.04 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=180.0
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEECCCCCEEEEEeCCCEEEEEEecC
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 421 (1086)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|+.||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 689999999999999999998865 33343 4688999999999998 35778999999 6
Q ss_pred CCccccceEeccc-cccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEeecC------CcceEEEeecccCCc
Q 001396 422 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI 493 (1086)
Q Consensus 422 ~~~~~~~~~~~~h-~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~ 493 (1086)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+... ......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 77555 34443 34688999999999 7787776 778888884 88888776521 122333343 5678
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc--
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 571 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 571 (1086)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 88888776653 4556788899999988764 457999999999999888754311
Q ss_pred -CCceEEEEEecCCCEEEEEECC--------CcEEEEEc-CCCeeEEEEcCCCCCCCCceEE
Q 001396 572 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 572 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
...+..+...++|..+++.... +..+++.+ .+++.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1337788889999888776421 23355555 4777777776655544455543
No 192
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=2.5e-12 Score=141.38 Aligned_cols=246 Identities=8% Similarity=-0.029 Sum_probs=169.7
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
......+.++...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIK 93 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEE
T ss_pred cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEE
Confidence 445566777777889999999998 688888889999999988875432 223557899999
Q ss_pred ECCCCCEEEEEeCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCC
Q 001396 398 WSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAV 467 (1086)
Q Consensus 398 ~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~ 467 (1086)
|+|+|+++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCC
Confidence 99999988887666 68999999887643211 1113445799999999998 5665543 3567777766
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEE-EEEEcCCeEEEEEcCCC-ceeEE------ecCC-CCceEEEEEecCCCEE
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSL-GARVD------YDAP-GLGCTRMAYSANGRRL 538 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~-~~~~~------~~~~-~~~i~~~~~s~d~~~l 538 (1086)
+++... +..+...+..++|+ +++..+ ++.+.++.|.+||+... ..... .... ...+..++++++|++.
T Consensus 171 ~~~~~~-~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 171 FRTVTP-IIQNISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 247 (333)
T ss_dssp SCCEEE-EEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred CCEEEE-eecCCCcccceEEC--CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence 555433 32333456778884 466655 45556899999999642 22111 1111 2467889999999977
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccc---cCCceEEEEEecCCCEEEEEECCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
++... ++.|.+||. +++.+..+..... +...+.+++|+|+++.|+.++.++
T Consensus 248 v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 248 VAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 76643 457999998 5666666654430 011688999999988887766554
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=6.7e-12 Score=138.68 Aligned_cols=281 Identities=12% Similarity=0.004 Sum_probs=187.2
Q ss_pred eecCCCceEEEEEe-ccC---cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe-
Q 001396 335 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 409 (1086)
Q Consensus 335 ~~spdg~~lla~gs-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 409 (1086)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578876444432 223 889999999987653 2222233 899999999999885
Q ss_pred ---------CCCEEEEEEecCCCccccceEec--c---ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeE
Q 001396 410 ---------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 410 ---------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~~~ 473 (1086)
.++.|.+||..+.+.+.... +. . +......++|+|||++ |+.++ .++.|.++| ++++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999999876554321 11 0 0123457999999994 55444 257899999 9999887
Q ss_pred E-eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-----CCCCc-eEEEEEecCCCEEEEEeeCCC
Q 001396 474 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 474 ~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~-i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+ +.... . +.+.+.. ...+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~~-~---~~~~~~~-~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSPT-C---YHIHPGA-PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCCc-e---EEEEeCC-CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 64322 1 2333332 246677888999999999 666553221 11112 233566777666554443
Q ss_pred CceeEEEEeCCCCe--eeeEEeccc-------ccCCceEEEEEecCCCEEEEEEC----------CCcEEEEEcCCCeeE
Q 001396 547 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 607 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~ 607 (1086)
.+.+.+.|..++. .+..+.... ........+.++|++++++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4578999987553 222222110 00123445789999998888653 357999999999999
Q ss_pred EEEcCCCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeee
Q 001396 608 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 653 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~ 653 (1086)
..+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9987543 368999999999 777776 489999999999988766
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=4.4e-13 Score=145.03 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=195.0
Q ss_pred EeeecCCCceEEEEEec----cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 333 SMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
.....||+++++++-.. ++.|.+.|..+++.+..... | ..+ . +++||||++|+++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v------------------G-~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG------------------G-FLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE------------------C-SSC-E-EEECTTSSCEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC------------------C-CCC-c-EEECCCCCEEEEE
Confidence 45668999976665543 68999999999998865221 2 223 4 9999999999877
Q ss_pred e----------CCCEEEEEEecCCCccccceEecc-----ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCce
Q 001396 409 Y----------SKHIVQLYAYHGGSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSR 471 (1086)
Q Consensus 409 ~----------~d~~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~ 471 (1086)
. .++.|.+||..+++.+..+. +.. .......++|+|||++ ++.+. .++.|.++|+.+++.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence 5 35789999999987665432 111 0124567999999995 44443 378999999999999
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEec----CCCCce-EEEEEe-cCCCEEEEEeeC
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYD----APGLGC-TRMAYS-ANGRRLFSCGTS 544 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~----~~~~~i-~~~~~s-~d~~~l~~~~~~ 544 (1086)
+.++..... .. +.|. ..+.+++.+.||.+.+.++.. ++...... ....++ ....|. ++|++++...
T Consensus 173 v~tI~v~g~---~~-~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-- 245 (386)
T 3sjl_D 173 KRMLDVPDC---YH-IFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 245 (386)
T ss_dssp EEEEECCSE---EE-EEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred EEEEECCCc---ce-eecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence 988854321 11 1222 335677888999999999876 34322111 111222 224564 6776665433
Q ss_pred CCCceeEEEEeCCCCe--eeeEEecc-------cccCCceEEEEEecCCCEEEEEEC----------CCcEEEEEcCCCe
Q 001396 545 KEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQ 605 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~ 605 (1086)
.+.|++.|..++. .+..+.-. .........+++++++++++.... .+.|.+.|+.+++
T Consensus 246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 4579999987654 33333200 000123445778999999988642 2579999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeeeccc
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.+..+.... .+..+++++|++ +|++.. .++.|.++|..+++.+..+..
T Consensus 323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 999987653 368999999997 666654 489999999999988877764
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.2e-11 Score=133.57 Aligned_cols=285 Identities=11% Similarity=0.053 Sum_probs=194.6
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
+..+...+.+++++++|+ +.++...++.|.+||.. ++.... . ...+...+.+++++++|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 345556899999999998 56665557899999988 543321 0 223457899999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v 482 (1086)
+.++...++.|..||.. ++ +... .+......+..+++.++|+ ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999976 33 2211 2223455789999999998 6777767889999998 6654432 23344567
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
..+++. +++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|.+||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 888874 46667777667889999998 4444332 3334456889999999997666432 457999998 6664
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
.. +... .....+.+++++++|+..++...++.|.+||. +++. ..+....+...+.++++ ++|.+.++.. .+.+.
T Consensus 216 ~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 33 3221 12357889999999886665557889999998 4543 33332232345788999 8887666554 56777
Q ss_pred EEECCCC
Q 001396 642 ILETPES 648 (1086)
Q Consensus 642 iw~~~~~ 648 (1086)
.++..+.
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776643
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=8.3e-12 Score=137.94 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=141.5
Q ss_pred eEEEeecCCCEEEEEe---CCeEEEEEccCceEEEE-EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001396 800 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 875 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 875 (1086)
..++++|||++|+++. ++.|.++| .+++.+.. +.... ++.+.|++.+.+++.+.||.+.++|. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 3688999999998876 36799999 99998887 65322 24555645567777888999999999 8876633
Q ss_pred ec-----cccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCC----ccCCCCceEEEEecCCCEE
Q 001396 876 LE-----GHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 876 l~-----~h~~~v-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l 945 (1086)
.. ....++ ....+++++..++..+..+.+.+.|+.+........+...... .........++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 111222 3356777776655556788999999976542221222211110 0000224458899999988
Q ss_pred EEEe-----------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceeeee
Q 001396 946 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 946 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
.+.. .+.|.++|..+++.+..+..+ .....+.|+|||+ .++++. .++.|.|||+.+++.++++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 257999999999998876543 3688999999999 677776 4899999999999999774
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1e-12 Score=143.59 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=183.6
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
.++++.++|..+.+....................+++. +++.+++...++.|.+||...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-------------------- 73 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-------------------- 73 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc--------------------
Confidence 46788888876433221110000011112345667764 455555556678888876543
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-eCCeEEEEEccCceEEEEEcCCC-----CCeEEEEEcCCCCCEE
Q 001396 780 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 853 (1086)
Q Consensus 780 ~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 853 (1086)
++.+.... .......++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 74 --~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 74 --FKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --CCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --cEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33233221 23567889999999655555 37899999999999887776433 14556777 4 66666
Q ss_pred EEEe-CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCC----------CcEEEEECCCCceeeeeeeec
Q 001396 854 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 922 (1086)
Q Consensus 854 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~ 922 (1086)
++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6654 4889999999999988877643 345789999999988877655 789999998866432 2222
Q ss_pred cCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceec-cccCCccCEEEEEEeC-CCCEEEEE----ECCCcE
Q 001396 923 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 996 (1086)
Q Consensus 923 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~l~fs~-dg~~l~s~----~~Dg~v 996 (1086)
..+ .....++|+||+++|.++.. .|.+||..+++.... +...+......++++| ++..+++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14689999999999988654 999999998876432 2222246789999999 55555555 568899
Q ss_pred EEEEcCCCceeeeec
Q 001396 997 SIHEASNLEVQCRIL 1011 (1086)
Q Consensus 997 ~vWd~~~~~~~~~~~ 1011 (1086)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 99888876
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=1.1e-12 Score=141.52 Aligned_cols=238 Identities=11% Similarity=0.063 Sum_probs=169.2
Q ss_pred ecCCCccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+..+.....+++|+|+|+ +++++..++.|.+||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445566788999999998 7778888899999999886 33 3556777899999999998 67777667899999
Q ss_pred eCCCCceeEEeecCC----cceEEEeecccCCccEEEEEEc-----------------CCeEEEEEcCCCceeEEecCCC
Q 001396 465 DAVTGSRTYSFEGHG----APVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~ 523 (1086)
|..+|+......... ..+..+++ +++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 998888654432221 23556777 457777777321 2345555443 3344444555
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC-CCee---eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 599 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 599 (1086)
.....++|+|+|+.+++... ++.|++|++. ++.. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 66789999999999854432 5679999986 5554 333422 23567789999999865555 7899999
Q ss_pred EcCCCeeEEEEcCCCCCCCCceEEE-ecCCCEEEEEECCCcEEEEECCCC
Q 001396 600 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 600 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
|.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 986 777777765533 788999 58999999988764 445555544
No 199
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=5e-09 Score=129.22 Aligned_cols=536 Identities=11% Similarity=0.042 Sum_probs=310.3
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CCCEEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 407 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las 407 (1086)
.|.++...++|+. |-.|+.++.+..||..+++...- .. ... .. ..-....|.++.... +|.+ ..
T Consensus 67 ~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~-~~---~~~------~~--~~l~~~~i~~i~~d~~~~g~l-wi 132 (781)
T 3v9f_A 67 ELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVY-QY---NPE------DP--QSLITNDVTHITSSVQAGKGL-WV 132 (781)
T ss_dssp CEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEE-CC---CTT------CS--SSCSCSCEEEEEECSSTTSEE-EE
T ss_pred ccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEee-cc---ccC------CC--CCcccCcceEEEecCccCCCE-EE
Confidence 6899999998872 33466665799999887664321 00 000 00 000124688998887 6654 44
Q ss_pred EeCCCEEEEEEecCCCccccceEec------cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee-----
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE----- 476 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~----- 476 (1086)
++.++.|..||..+++... +. -....|.++...++|. +..+..++-+..||..+++...-..
T Consensus 133 ~t~~~gl~~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 205 (781)
T 3v9f_A 133 CTYYRGIEYLDIATGKFTH----YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNP 205 (781)
T ss_dssp EESSSCEEEEETTTTEEEE----ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-----
T ss_pred EECCCCeeEEECCCCeEEe----eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCc
Confidence 5534448889987654221 11 1134588888887776 4446666568999987765432111
Q ss_pred --cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-------cCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 477 --GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 477 --~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.....|.++.. +.++. |..++.+ -+.+||..+....... ......|.++...++|.+.+...
T Consensus 206 ~~l~~~~i~~i~~--d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~----- 276 (781)
T 3v9f_A 206 NSLPGNDVRCIYK--DTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE----- 276 (781)
T ss_dssp ---CCSSEEEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----
T ss_pred ccCCCCceeEEEE--cCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----
Confidence 11345777765 44544 4455555 6888987655433211 12345688999888887655432
Q ss_pred ceeEEEEeCCCCeeeeEEe-----------cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc-----
Q 001396 548 ESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----- 611 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----- 611 (1086)
.+-|.++|..++....... ........|.++...++|. |..|+.++-|..++..++.......
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 1238889987765432221 0112236789999888875 6667777778999987654332211
Q ss_pred --CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCC
Q 001396 612 --AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 689 (1086)
Q Consensus 612 --~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s 689 (1086)
..-....|.+++..++|. |.+|+.++-|..|+..++... .+..
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~--------------------------------- 400 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE--------------------------------- 400 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC-----------------------------------
T ss_pred ccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC---------------------------------
Confidence 111123477788777776 455665666888876532110 0000
Q ss_pred CCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc
Q 001396 690 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 769 (1086)
Q Consensus 690 ~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 769 (1086)
+ .......|.++...++|...+ ++.++.+..++....
T Consensus 401 ~---------------------------------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--------- 437 (781)
T 3v9f_A 401 N---------------------------------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK--------- 437 (781)
T ss_dssp ------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC---------
T ss_pred C---------------------------------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC---------
Confidence 0 000234577787777777444 555444555543221
Q ss_pred cccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCC-----CCCeEEEE
Q 001396 770 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLA 844 (1086)
Q Consensus 770 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~ 844 (1086)
. +...... ......|.++...++|.+.+... +.+..+|..+++........ ...|.+++
T Consensus 438 -------------~-~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 438 -------------K-FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA 501 (781)
T ss_dssp -------------E-EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE
T ss_pred -------------c-EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEE
Confidence 1 1111000 01346788999988887666554 67889998876554333222 46789999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeee
Q 001396 845 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 921 (1086)
Q Consensus 845 ~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 921 (1086)
..+ ++++.+ |+.++-+..||..+++...-... ....|.++...++|.+.++.. +|.|..||..+++.. ...
T Consensus 502 ~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~---~~~ 575 (781)
T 3v9f_A 502 QDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ---VFQ 575 (781)
T ss_dssp ECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE---EEC
T ss_pred EcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE---Ecc
Confidence 988 776655 55544488899877654332111 235689999999998777554 775488888765422 222
Q ss_pred ccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccc--cC---CccCEEEEEEeCCCCEEEEEECCCcE
Q 001396 922 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PI---SSVPISQATFSCDCRMVFTSFVDGTL 996 (1086)
Q Consensus 922 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~---h~~~v~~l~fs~dg~~l~s~~~Dg~v 996 (1086)
...+... ..|.++...++|.+.+++.. .|..++..++.... +. .+ ..-...++...+||.+++ |+.+| +
T Consensus 576 ~~~gl~~--~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l 649 (781)
T 3v9f_A 576 RKEGLPN--THIRAISEDKNGNIWASTNT-GISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-L 649 (781)
T ss_dssp GGGTCSC--CCCCEEEECSSSCEEEECSS-CEEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-E
T ss_pred ccCCCCC--ceEEEEEECCCCCEEEEcCC-ceEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCCc-e
Confidence 2222221 35788999999987777644 47778877654322 11 11 112235677788887666 66788 4
Q ss_pred EEEEcC
Q 001396 997 SIHEAS 1002 (1086)
Q Consensus 997 ~vWd~~ 1002 (1086)
..++-.
T Consensus 650 ~~f~p~ 655 (781)
T 3v9f_A 650 CFFNPD 655 (781)
T ss_dssp EEECSC
T ss_pred EEEChh
Confidence 445543
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1.5e-13 Score=167.28 Aligned_cols=249 Identities=9% Similarity=-0.069 Sum_probs=163.6
Q ss_pred cCCCCceEeeecCCCceEEEEEe----ccCcEEEEecCCCcee-eeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGT----NVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs----~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
+|...+..++|||||++|+.+.+ .+.+|++||+.+|+.+ .. . +.+. ....++|||
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 56667999999999997444433 3457999999999865 21 0 1111 125799999
Q ss_pred CCCEEEEEeCCCE-------------EEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCCC----cEE
Q 001396 401 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 462 (1086)
Q Consensus 401 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~----~i~ 462 (1086)
||+.|++++.+.. |++|++.++.... .......|...+..++|+|||+. |+..+.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988765 9999999876321 11122345567899999999995 44444344 677
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE---cCCeEEEEEcCCCce---eEEecCC-CCceEEEEEecCC
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 535 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~-~~~i~~~~~s~d~ 535 (1086)
+||..+++ ...+..+...+....+ . ++.+++... .++.|.+||+.++.. ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~--~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA--W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE--E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe--c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77766664 4455556555555554 2 444444443 358899999987653 3333333 4567888888 66
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCee
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 606 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 606 (1086)
.++++... ++...|.++++. ++..+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666654 234456666654 44555555432 25677888999998777432 347899999998774
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=1.5e-12 Score=137.47 Aligned_cols=222 Identities=8% Similarity=-0.018 Sum_probs=165.7
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCe
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 883 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v 883 (1086)
.++.|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456677776 7999999999999999998766 5789999999 888888 45788999999 899999988653 478
Q ss_pred EEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeeeeeeecc-CCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCC
Q 001396 884 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 960 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~ 960 (1086)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .++. .....+++.++|.++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777764 333222222111 1111 135567889999999984 67899999998
Q ss_pred ccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001396 961 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1040 (1086)
Q Consensus 961 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1040 (1086)
|+.+.++.. ...+.++.+.++|..+++++.++.|..+|..+|+.+.++..... +.. .-..+..++..+ +++++
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 888776443 24556678899999999998888999999999999988863221 111 113456677777 67777
Q ss_pred EEEe
Q 001396 1041 AVGL 1044 (1086)
Q Consensus 1041 ~~~~ 1044 (1086)
++..
T Consensus 228 v~~~ 231 (276)
T 3no2_A 228 ICNW 231 (276)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7663
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=1.2e-12 Score=160.43 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=164.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 460 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-- 460 (1086)
+|...+..++|||||++||.++.+ .+|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999875431 122223468999999 8 4555555443
Q ss_pred ------------EEEEeCCCCce--eEEeec--CCcceEEEeecccCCccEEEEEEcCC-----eEEEEEcCCC--ceeE
Q 001396 461 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 517 (1086)
Q Consensus 461 ------------i~iwd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~--~~~~ 517 (1086)
|++|++.++.. ...+.. +...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999988763 223332 3335777777 56888888877554 8999999876 3133
Q ss_pred EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCc
Q 001396 518 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 595 (1086)
Q Consensus 518 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 595 (1086)
.+..+....... ++|+|+.|+..+..+.....|++||+.++ +....+..+. ..+..+.++ ++..+++...++.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 333333344444 35999999888765444678999999885 3333443333 456677777 5566777888888
Q ss_pred EEEEEcC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCC
Q 001396 596 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 649 (1086)
Q Consensus 596 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 649 (1086)
.++|.+. ++.....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777654 455566665432 234677889999876664322 4789999998764
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=5.9e-11 Score=128.04 Aligned_cols=279 Identities=10% Similarity=0.079 Sum_probs=190.8
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
+...+.++++.++|..+++...++.+.+|+.. .. ....... .....+..+++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-----------------------~~~~~~~--~~~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-----------------------ITEYPLP--TPDAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-----------------------EEEEECS--STTCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-----------------------eEEecCC--cccCceeeEEECC
Confidence 34578999999999977776667888887644 21 1111111 1345688999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceE-EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-EeccccCCe
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRV 883 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~v 883 (1086)
+|.++++.. ++.|..|+.. ++. ...+......+.++++.+ +++++++...++.|..||. +++... .+..+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888776 6889999986 333 222223456789999999 8888887777889999998 555433 233355678
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCcc
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 962 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~ 962 (1086)
.++++.++|+++++...++.|..||. +++... +..... . ..+..++++++|++.++. .++.|.+|+. +++
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~-~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP-A---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST-T---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC-C---CcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 99999999998888777888999998 544322 111111 1 247899999999977765 4678999998 666
Q ss_pred ceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001396 963 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1042 (1086)
Q Consensus 963 ~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1042 (1086)
........+...+.+++++++|.++++...++.|..||. ++... .+. .+.. ...+.++++ + ++.++++
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~----~~~~~~i~~-~-~g~l~v~ 282 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK----SAEPHGICF-D-GETIWFA 282 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS----SCCEEEEEE-C-SSCEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC----CCccceEEe-c-CCCEEEE
Confidence 433223335678999999999997776657789999998 45432 222 1111 123567777 6 5666555
Q ss_pred EeCCCcEEEEccCC
Q 001396 1043 GLTNGEVYVIEPNE 1056 (1086)
Q Consensus 1043 ~~~dg~v~vw~~~~ 1056 (1086)
.. .+.|..++...
T Consensus 283 ~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 283 ME-CDKIGKLTLIK 295 (299)
T ss_dssp ET-TTEEEEEEEC-
T ss_pred ec-CCcEEEEEcCc
Confidence 44 67777777643
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=1.6e-12 Score=138.05 Aligned_cols=240 Identities=8% Similarity=-0.042 Sum_probs=166.7
Q ss_pred CceEeeecCCCceEEE-EEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 330 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla-~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 678999999997 566 556778999999766543211 11233567889999999966665
Q ss_pred eCCCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEee
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 487 (1086)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2335689999999998 6777777889999986655443322233345677887
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
. +++.++++...++.|.+||................+..++++++|...++... ++.|.+||..+.........
T Consensus 158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 5 46667777777899999998776554433333357889999999976666543 55699999876543322112
Q ss_pred ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
. ...+.+++++++|+.+++...++.|+++++...+
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 2568899999999877888889999999987654
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=1.1e-11 Score=137.10 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=143.8
Q ss_pred eEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-
Q 001396 800 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 875 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~- 875 (1086)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||++.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 3568899999888875 36899999999999988874321 334443456677777888888888866655432
Q ss_pred ---eccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc-c---CCCCceEEEEecCCCEEEE
Q 001396 876 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 876 ---l~~h~~~v-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~s~dg~~l~~ 947 (1086)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... . .......++++||++++.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999988888888899999999765432211111110000 0 0012334799999998877
Q ss_pred Ee-----------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceeeee
Q 001396 948 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 948 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
.. ++.|.+.|..+.+.+..+..+ .....+.|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999999999886543 3588999999999 888887 5899999999999999887
No 206
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=4.7e-12 Score=134.44 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.4
Q ss_pred cEEEEEECCCCCEEE-EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 392 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 392 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
...+++++++|++++ +...++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 778999999999777 44678899999986654221 1123335688999999998 566655 8899999976554
Q ss_pred eeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 471 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 471 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 2335678888854 6677777778899999976554443322233346788999999986666543 55
Q ss_pred eEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 629 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 629 (1086)
.|.+||..++.......... ..+..++++++|..+++...++.|.+|+..+..... ... .+...+.+++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 79999988765443322222 568899999999766666678899999987654433 221 2223578999999999
Q ss_pred EEEEEECCCcEEEEECCCCC
Q 001396 630 LLAVIANENRIKILETPESN 649 (1086)
Q Consensus 630 ~l~~~~~dg~i~iw~~~~~~ 649 (1086)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987543
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=1.2e-10 Score=125.63 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=190.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|.+.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence 3445889999999998 56666667999999987 553321 1 22344678999999999988
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeecCCcceEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 484 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~ 484 (1086)
++...++.|..||.. ++. .. ..+......+.++++.++|+ ++++...++.|..+|.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-TE-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-EE-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-EE-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877778889999987 543 21 12233446789999999998 67776668899999987 66542 23334456788
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
+++. +++.+.++...++.|..+|. +++... ........+..++++++|+..++... .+.|.+||. +++...
T Consensus 151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 8874 46666666666889999988 433332 22233456889999999987766532 456999998 554433
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.... .....+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|..+
T Consensus 223 ~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 223 YDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 2111 11356889999999986666656789999998 45433 332232234578999999998655544 4 66666
Q ss_pred EC
Q 001396 644 ET 645 (1086)
Q Consensus 644 ~~ 645 (1086)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=5.7e-12 Score=139.23 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=192.3
Q ss_pred CCCceEEEEEecc----CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe----
Q 001396 338 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 409 (1086)
Q Consensus 338 pdg~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 409 (1086)
|++++++++...+ +.|.++|..+++.+..... | ..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence 5666655655544 7999999999998865322 2 234 799999999998885
Q ss_pred ------CCCEEEEEEecCCCccccceEec--c---ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEEee
Q 001396 410 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 410 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~~~~~~ 476 (1086)
.++.|.++|..+++.++.+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988665432 21 0 1123567899999995 44444 36889999999999998886
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE----ecCCCCc-eEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
.... ....+... ..+++.+.||.+.+.+..+++.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4667778888888888854444321 1222222 123567899888877654 4579
Q ss_pred EEEeCCCCeee--eEEecc-----c--ccCCceEEEEEecCCCEEEEEEC----------CCcEEEEEcCCCeeEEEEcC
Q 001396 552 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 552 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 612 (1086)
++.|...+... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655421 222110 0 00012223689999998887642 35799999999999999875
Q ss_pred CCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeeec
Q 001396 613 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 654 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 654 (1086)
.. ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 43 258999999999 888888 5899999999999888775
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=4.9e-12 Score=155.04 Aligned_cols=248 Identities=11% Similarity=0.006 Sum_probs=159.4
Q ss_pred cCCCCceEeeecCCCceEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+|...+..++|||||++|+.+.+.+| +|++||+.+|+.+.. . . +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 34447889999999997444443334 599999999987542 1 0 1122357899999
Q ss_pred CCEEEEEeCCCE--------------EEEEEecCCCccccceEec--cccccEeEEEecCCCCcEEEEEEeC-----CCc
Q 001396 402 GSLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKT 460 (1086)
Q Consensus 402 g~~las~~~d~~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d~~~l~l~s~~~-----d~~ 460 (1086)
+.|+.++.++. |++|++.++...... .+. .+...+..+.|||||+. |+..+. ...
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNT 295 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcce
Confidence 99999876543 899999876532111 222 33345889999999994 444443 348
Q ss_pred EEEEeCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEc----CCeEEEEEcCCC--ceeEEecCCCCceEEEEEe
Q 001396 461 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSL--GARVDYDAPGLGCTRMAYS 532 (1086)
Q Consensus 461 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s 532 (1086)
|++||+.++ ++...+..+...+....+ +++..|+..+. ++.|.+||+.+. .....+..+...+..++++
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 999999887 425556555555544432 35567777665 345999998874 2333444444556677776
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCee
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 606 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 606 (1086)
++.++++... ++...|+++++. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 373 -~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 -GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4555555544 334556667764 44555555332 26788899999988666432 357899999998873
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=8.9e-11 Score=127.69 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=166.9
Q ss_pred ccCCCCceEeeecCCCceEEEE-------EeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~-------gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+.-....+++|+++|+ ++++ ++.++.|.+||..+++.... .. ....++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence 33344778999999997 5776 56789999999888875421 00 00123446789999
Q ss_pred ECCC-CCEEEEEeCCCEEEEEEecCCCcccc-ceEecc-ccccEeEEEecCCCCcEEEEEEeCC---------------C
Q 001396 398 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 459 (1086)
Q Consensus 398 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d---------------~ 459 (1086)
++++ |+++++.. .+.|.+||.+ ++.... .....+ ....+.+++++++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555554 4469999988 653221 100011 224588999999998 56665544 5
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeec--ccCCccEEEEE-EcCCeEEEEEcC-CCce-----eEEecCCC-CceEEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIFSI-SVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRM 529 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~-s~dg~i~vwd~~-~~~~-----~~~~~~~~-~~i~~~ 529 (1086)
.|..||.. ++..... .+......++++ .++++..++.+ ..++.|.+||.+ .+.. ...+..+. .....+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67888865 5544332 333445777775 11566555544 568999999986 3321 12223332 567889
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCC
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 603 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~ 603 (1086)
+++++|+..++... ++.|.+||..+++.+..+..+. ..+.+++|+++++.|++++ .++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988877643 4579999998788777776554 6789999999999666554 568899999864
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.2e-09 Score=117.79 Aligned_cols=243 Identities=12% Similarity=0.016 Sum_probs=168.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+......+.++++.++|++.++...++.|.+||.. ++... ..+..+...+.++++.++|+ ++++...++.|..||
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS 89 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence 33455788999999999988877778899999987 54322 12333446789999999998 667666678899999
Q ss_pred CCCCceeE-EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-EEecCCCCceEEEEEecCCCEEEEEee
Q 001396 466 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.. ++... .+......+..+++. +++.++++...++.|..+|.+ ++.. .........+..++++++|+..++...
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 77 65432 222234567888875 466677777668899999887 4433 223334557889999999996655432
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
.+.|..+|. +++... +.... ....+..+++++++...++....+.|.+|+. +++..... .......+.+++
T Consensus 166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPTPNARPHAIT 236 (300)
T ss_dssp ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCCEEEEE
T ss_pred ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCCCCCCceEEE
Confidence 456999998 555443 32211 1256889999999876666666778999998 55544332 222234578899
Q ss_pred EecCCCEEEEEECCCcEEEEECC
Q 001396 624 FNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
++++|++.++...++.|..|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999866666567899999883
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.37 E-value=2.7e-10 Score=127.79 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=164.1
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
...+.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 3688999999997 788887789999999988765532 112 22233 9999999999988
Q ss_pred eCCC--EEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE----eecCCcc
Q 001396 409 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 481 (1086)
Q Consensus 409 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 481 (1086)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 7765 799999877654332111112 4567889999996553 33466688999999987764322 2222222
Q ss_pred e--EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC---------------CCceEEEEEecCCCEEEEEeeC
Q 001396 482 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 482 v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
- ..++|++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 3567777778899999987654 2222211 13478999999999666643
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccc------------ccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
.++..|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0267899999877764 4444431 00245789999999877777778888888765
No 213
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.35 E-value=2.3e-06 Score=100.57 Aligned_cols=534 Identities=9% Similarity=-0.018 Sum_probs=291.9
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
+|+.+ ....|+..++++..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 45444 45678999998654221 1112 22346789999997775 556666788999999875544333332224566
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
.+++.+. ++.+.++-...+.|.+.+++.................+++.|....|+..... ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 34566666677899999987665544443444567899999976666655321 14578888876554433
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 642 (1086)
... . ......++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~-~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVP-N---VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EEC-S---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EEC-C---CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 333 2 25788999999888887765 567899999876544 233222 22346777765 444444445788888
Q ss_pred EECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccccc
Q 001396 643 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 722 (1086)
Q Consensus 643 w~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 722 (1086)
.|..++.....+.........+.+....... +...+ ...++ +.-.+--........|..-
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C-------~~~ng---------~C~~~C~~~~~~~~~C~C~-- 292 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNEC-------ASSNG---------HCSHLCLAVPVGGFVCGCP-- 292 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTT-------TTTGG---------GCSSEEEEETTTEEEEECS--
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--cceEe-------ccCCC---------CcchhhhcCCCCCeeEEcC--
Confidence 8877776555554433333333332111000 00000 00000 0000000000000000000
Q ss_pred CC-cccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeE
Q 001396 723 PS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 801 (1086)
Q Consensus 723 ~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 801 (1086)
+. .......+|. +....++.+. ...|+-..+... ... -..... ..-..+..
T Consensus 293 ~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~~ 344 (628)
T 4a0p_A 293 AHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVRA 344 (628)
T ss_dssp TTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEEE
T ss_pred CCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCceE
Confidence 00 0000011111 1122222222 223332221110 000 001111 12345778
Q ss_pred EEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 802 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 802 l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
++|.+.+..|..+. .+.|..++.........+.. ....+..+|+...++++..+-+..+.|.+.++. |+..
T Consensus 345 ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~ 423 (628)
T 4a0p_A 345 IDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSV 423 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEE
T ss_pred EEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeE
Confidence 99999877777776 47788888764433233322 234678999998445566666677899999987 4444
Q ss_pred EEe-ccccCCeEEEEEeC-CCCEEEEEeCCC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-
Q 001396 874 SKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 948 (1086)
Q Consensus 874 ~~l-~~h~~~v~~l~~sp-dg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~- 948 (1086)
..+ ........+|++.| .|.++.+-.... .|...+++...... .+. ... .....+++++++..|..+
T Consensus 424 ~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla~D~~~~~LYw~D 495 (628)
T 4a0p_A 424 GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALALDSRLGKLFWAD 495 (628)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEEEeCCCCEEEEEe
Confidence 443 33456789999999 555555533222 56666666533211 111 111 246899999998888775
Q ss_pred -eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 949 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 949 -~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
..+.|..+++. |.....+.........+++... +..+.+=.....|...|..+|+....+.
T Consensus 496 ~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 496 SDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp TTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred CCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 44789999985 4444444433344567777655 4455555556778888888776554443
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=2.4e-10 Score=124.22 Aligned_cols=244 Identities=9% Similarity=0.062 Sum_probs=163.2
Q ss_pred ceEEEEEecCCceEEE-------eeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCC-CCCCCCCeeE
Q 001396 730 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC 801 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~v~~ 801 (1086)
...+++|+++|..+++ ...++.|.+|+...... . ..... ..++...+..
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~----------------------~-~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK----------------------T-VICKPEVNGYGGIPAG 75 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE----------------------E-EEECCEETTEECCEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE----------------------E-EEEecccCCCCCCCce
Confidence 4578899999987777 56677888876543221 1 00000 0013356889
Q ss_pred EEeecC-CCEEEEEeCCeEEEEEccCceEEEE-EcC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001396 802 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S 860 (1086)
Q Consensus 802 l~~s~d-g~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g 860 (1086)
++++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999998 665433 221 123578999999 78888776654 5
Q ss_pred eEEEEEcCCceeEEEeccccCCeEEEEEe----CCCCEEE-EEeCCCcEEEEECC-CCceeeeeeeeccCCCccCCCCce
Q 001396 861 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILV-SSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 861 ~v~iwd~~~~~~~~~l~~h~~~v~~l~~s----pdg~~l~-s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
.|..|+.. ++.... ..+......++|+ ||++.|. +...++.|.+|+++ .+.......+....++.. ..+.
T Consensus 154 ~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777766 554332 3344557889999 9997654 44567899999986 443322223333322210 1367
Q ss_pred EEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEE-EEECCCcEEEEEcCC
Q 001396 935 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1003 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-s~~~Dg~v~vWd~~~ 1003 (1086)
.++++++|++.++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988874 6789999999877766543 34457899999999999555 444567899999875
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=2.1e-10 Score=139.07 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=165.5
Q ss_pred cCCCCceEeeecCCCceEEEEEec----cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+|...+..++|||||++++.+.+. ..+|++||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 455678899999999975444333 35699999999986542 1 1 11113568999 9
Q ss_pred CCEEEEEeCCC-------------EEEEEEecCCCcccc-ceEecc-ccccEeEEEecCCCCcEEEEEEe---CCCcEEE
Q 001396 402 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 463 (1086)
Q Consensus 402 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~---~d~~i~i 463 (1086)
|+.|+.++.+. .|++|++.++..... ...... |...+..+.|+|||+.+ +++.+ .++.|++
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998774 499999987653211 111223 44567889999999963 33333 2358999
Q ss_pred EeCCCCc-eeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCce--eEEecCCCCceEEEEEecCCCE
Q 001396 464 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 464 wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+|+.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666655554 3322 33444444443 6799999987654 233444444444 89999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC----CcEEEEEcCCCeeE
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 607 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 607 (1086)
|+..... ++...|++||+.++. .+.+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877652 345689999988554 34443222 2467777888888877765444 78999999887643
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=4.8e-10 Score=120.40 Aligned_cols=231 Identities=12% Similarity=0.092 Sum_probs=156.1
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+..-..+..|+|++..++++...++.|..||..+++.... .....+.+++++|+|+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~ 68 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYV 68 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEE
Confidence 33345668899997767888888889999999988764311 134679999999999965
Q ss_pred EEEeCCCEEEEEEecCCCccccceEecc--ccccEeEEEecCCCCcEEEEEEeC---------CCcEEEEeCCC-CceeE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVT-GSRTY 473 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~d~~~l~l~s~~~---------d~~i~iwd~~~-~~~~~ 473 (1086)
++ . ++.|.+||.++++... ...... ....+.+++++|+|+ ++++... .....+|.+.. ++. .
T Consensus 69 v~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 69 AT-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp EE-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred EE-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 54 3 4579999998875322 111111 224588999999998 4554322 12334554443 433 3
Q ss_pred EeecCCcceEEEeecccCCccEE-EEEEcCCeEEEEEcC--CCcee-----EEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~--~~~~~-----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
.+..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... ..+.........++++++|++.++...
T Consensus 143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 3333444567888854 66555 556678999999974 33221 122223356789999999987776643
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEEC
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 592 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 592 (1086)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4569999999999988888765 679999998 88888877654
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=3.4e-10 Score=122.19 Aligned_cols=237 Identities=12% Similarity=0.041 Sum_probs=160.7
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+..|..+........|+|+|++|++++..++.|..|+. +++.. . +..+...+..+++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~~ 93 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNAV 93 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceeeE
Confidence 3445555555678899999999988889888999999998 45422 1 2234567899999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccc-cccEeEEEecCCCCcEEEEE----EeC-------------CCc
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DKT 460 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~d~~~l~l~s----~~~-------------d~~ 460 (1086)
+++|+++++...++.|.+|+.+ ++.........+. ...+.++++.++|+ ++++ |.. .+.
T Consensus 94 d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~ 170 (305)
T 3dr2_A 94 DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHS 170 (305)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCe
Confidence 9999977766666789999986 4421111111111 23577899999998 6665 321 256
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCce---eEEecCCCCceEEEEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMAY 531 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~~ 531 (1086)
|..||..+++..... .......++|+ +++..|+.+... +.|.+|++..... .............+++
T Consensus 171 v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 171 VYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp EEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred EEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence 888887777755433 33456778884 466777776655 7899999875431 1111222334567899
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
+++|++.++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++
T Consensus 247 d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 247 DRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTE
T ss_pred CCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCe
Confidence 9999955443 2 2 3999998 567777776543 478899999999998888764
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=4.9e-11 Score=131.17 Aligned_cols=273 Identities=11% Similarity=0.017 Sum_probs=176.0
Q ss_pred CCceEeeecCCCceEEEEEec--cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
..+..++++|+|+ ++++... ++.++||.+.+|+.. .+.-|.. ...+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 5666542 343666666555422 2211110 1234667899999999998766
Q ss_pred EEeC-----CCEEEEEEecCCCccccceEec----cccccEeEEEecCCCCcEEEEEEe---CCCcEEEEeCCCCceeEE
Q 001396 407 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 407 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~v~~s~d~~~l~l~s~~---~d~~i~iwd~~~~~~~~~ 474 (1086)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988754422 221 22345789999987653 456655 688999999999988777
Q ss_pred eecCCcceE-EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 475 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 475 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+.+|..... ...+ ..++..+.+.+.++.++.|. ..+..++|+|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765432211 0222 22556677777888876663 135789999999988887642 235666
Q ss_pred EeCC---CCe-----eee--EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 554 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 554 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 6532 111 000 111222 35667899999988888888999999998667654433322 223467899
Q ss_pred EecCCCEEEEEECCCcE
Q 001396 624 FNKNGTLLAVIANENRI 640 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i 640 (1086)
|.+++.++++....+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998877776654443
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=9.3e-10 Score=118.17 Aligned_cols=228 Identities=10% Similarity=0.052 Sum_probs=149.3
Q ss_pred ceEEEEEecCCceE-EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 730 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
-..+..|++++..+ ++...++.|..|+.... . ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence 34578888865544 44445677777765432 2 11111 34568899999999
Q ss_pred CEEEEEeCCeEEEEEccCceEEEEEcC----CCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-ceeEE
Q 001396 809 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 874 (1086)
Q Consensus 809 ~~l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~-~~~~~ 874 (1086)
+++++ .++.|.+||..+++....... ....++.++++| +|+++++...+ ..-.||.+.. ++..
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~- 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK- 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEE-
Confidence 95554 577899999988776443322 123578999999 78877754321 2334555443 3332
Q ss_pred EeccccCCeEEEEEeCCCCEEE-EEeCCCcEEEEEC--CCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eC
Q 001396 875 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 950 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 950 (1086)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.......+....... +....++++++|++.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 2333445578899999998764 5556788999998 455433333333322211 246789999999887775 56
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEEEC
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 992 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~~~ 992 (1086)
+.|.+||..+|+.+..+. .+...+++++|+ ||++.|+.++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 789999999898877643 345689999999 88887766554
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.30 E-value=3.9e-10 Score=122.76 Aligned_cols=174 Identities=9% Similarity=0.065 Sum_probs=135.1
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEEccCce-----------EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 797 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
..+..+++++...++++++...+.+|++.+.+ ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999998888889976543 11222 2455 999999 57788888 78999999
Q ss_pred EcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 866 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
|+.+.........|..++.++.+.+.. +++++.||.|.+||+..+.... + . ..|++++|||+| +.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence 998876666677788889888887653 8889999999999999765321 1 1 259999999999 44
Q ss_pred EEEeCCeEEEEEcCCccc--eeccc-----c---CCccCEEEEEEeCCCCEEEEEE
Q 001396 946 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 946 ~~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
+...||.+++|+...+++ ...+. . +|...|.++.|.+++.++++=+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 447899999999887774 33321 1 4789999999999999988643
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.2e-09 Score=122.62 Aligned_cols=249 Identities=10% Similarity=-0.005 Sum_probs=163.9
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeE
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 873 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 873 (1086)
.....++++++++++++.. ++.|++||..++.......... ... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3567899999999766665 4889999999887766555432 233 99999 888888888766 8999998766544
Q ss_pred EEe----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE--
Q 001396 874 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-- 947 (1086)
Q Consensus 874 ~~l----~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-- 947 (1086)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+.... .+...++|+|++..|.+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~~-~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLGT-NPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCCC-SSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCCC-CccccEEEeCCCCEEEEEe
Confidence 343 224566888999995555555777889999999876532211110 1111110 01138999996555544
Q ss_pred EeCCeEEEEEcCCccceeccccCC---------------ccCEEEEEEeCCCCEEEEEE-CCCcEEEEEcCCCceeeeec
Q 001396 948 VHETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 948 ~~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~s~~-~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
...+.|+.|+.... +.. ..++ -.....++|+++|.++++-. .+++|+.|++.+|.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCC--EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 35678999987643 211 1111 23588999999999888777 78899999988887543322
Q ss_pred cccccC--CC--CccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1012 STAYLR--PT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1012 ~~~~~~--~~--~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
...... .+ ....-..|..++++| ++.++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 100000 00 001124578999999 5777777777888888765
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=1.8e-10 Score=139.61 Aligned_cols=245 Identities=10% Similarity=0.069 Sum_probs=160.8
Q ss_pred CCCccEEEEEECCCCCEEEEEe-----CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC---
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 459 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--- 459 (1086)
+|...+..++|||||++||.+. ...+|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 4566888999999999999653 235799999999875431 11 11123678999 999 566665553
Q ss_pred ----------cEEEEeCCCCce--eEEe--ec-CCcceEEEeecccCCccEEEEEEc----CCeEEEEEcCCCc-eeEEe
Q 001396 460 ----------TIKVWDAVTGSR--TYSF--EG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 519 (1086)
Q Consensus 460 ----------~i~iwd~~~~~~--~~~~--~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~-~~~~~ 519 (1086)
.|++|++.++.. ...+ .. |...+.++.+ ++||++|+.... ++.|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987753 2222 33 3445667777 557777755433 2589999998764 33444
Q ss_pred cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCC---
Q 001396 520 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 594 (1086)
Q Consensus 520 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--- 594 (1086)
..+....... ++++|..++..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887776664333367899999988754 34555554 3343 8899999888766443
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC----CcEEEEECCCCC
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 649 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 649 (1086)
.|++|++..+ ....+.... ...+..+.++++++.++....+ +++..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 444554332 1234556677888777666554 789999987764
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=2e-10 Score=124.90 Aligned_cols=195 Identities=11% Similarity=0.004 Sum_probs=128.0
Q ss_pred EEEeecCCCEEEEEe---CCeEEE--EEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----c
Q 001396 801 CFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----S 870 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~ 870 (1086)
.++++|||++++++. ++.+.+ +|..+ +..+.... . ..+.|++.+.+++.+.||.+.+.++.+ +
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 578888888888875 256888 88877 34443211 1 223453556666777888888889887 4
Q ss_pred eeEEE----eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecc------CCCccCCCCceEEEEec
Q 001396 871 EVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 871 ~~~~~----l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~ 940 (1086)
+.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+... .....++|+|
T Consensus 201 ~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s~ 273 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKLK 273 (368)
T ss_dssp ECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEET
T ss_pred eEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEcC
Confidence 43321 11122333 3 677777766667 8999999975332111111111 01000 1223378999
Q ss_pred CCCEEEEE-e-C--------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceee
Q 001396 941 DQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQC 1008 (1086)
Q Consensus 941 dg~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~ 1008 (1086)
||+++.++ . . +.+.++|+.+++.+..+..+ .....++|++||+ .+++.. .+++|.|+|+.+++.+.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99998874 3 2 36779999999988876554 3688999999998 456666 59999999999999998
Q ss_pred eec
Q 001396 1009 RIL 1011 (1086)
Q Consensus 1009 ~~~ 1011 (1086)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 886
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=1.6e-10 Score=125.78 Aligned_cols=272 Identities=10% Similarity=-0.037 Sum_probs=174.8
Q ss_pred eEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe--------
Q 001396 342 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 409 (1086)
Q Consensus 342 ~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------- 409 (1086)
++.++...++ +|.+.|..+++.+.+... |. .+ .+++||||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v------------------G~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------------------AF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------CT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeC------------------CC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555455 788999999998875321 22 34 799999999999986
Q ss_pred --CCCEEEEEEecCCCccccceEecc-c----cccEeEEEecCCCCcEEEEEEe--CCCcEEE--EeCCCCceeEEeecC
Q 001396 410 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 478 (1086)
Q Consensus 410 --~d~~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~v~~s~d~~~l~l~s~~--~d~~i~i--wd~~~~~~~~~~~~h 478 (1086)
.++.|.+||+.+++.+..+. +.+ . ......++|+|||++ ++.+. .+..+.+ +|+.+ +.++...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998766432 210 0 123568999999995 44443 3567888 99877 4455321
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-----CceeEE----ecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVD----YDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~----~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
. . ..+.+... ..+++.+.||.+.+.|+++ ++.... +.....+. . ++++..++..+. +
T Consensus 166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 1 1 11223322 3556677888888888876 222110 11112232 3 677776666543 3
Q ss_pred eEEEEeCCCCe--eeeEEecc-------cccCCceEEEEEecCCCEEEEEEC---------CCcEEEEEcCCCeeEEEEc
Q 001396 550 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 550 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 611 (1086)
.+.+.|..++. .+..+... .........+.++|++++++.+.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 58888886532 22222110 000011222689999999887543 2356699999999988887
Q ss_pred CCCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeeecccc
Q 001396 612 AGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
... ....++|+|||+ ++++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 553 368999999998 455555 5899999999999888877643
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=4e-09 Score=114.74 Aligned_cols=225 Identities=13% Similarity=0.027 Sum_probs=150.8
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
-....+|+|+++.+++++..++.|..||..+++... +. ....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 456789999877788888888999999998875431 11 23579999999999887765
Q ss_pred CCCEEEEEEecCCCccccceEec-c-ccccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeecCCcc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
.++ |.+||..+++... ..... + ....+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 444 9999998876322 11111 1 124689999999998 4554432 24566666 45433 33333345
Q ss_pred eEEEeecccCCccEEE-EEEcCCeEEEEEcC--CC-ce-----eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 482 VYSLCPHAKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
...++|+ ++++.++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 6778885 4666554 44567899999986 43 21 1122223456788999999987776542 45699
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEECC
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD 593 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d 593 (1086)
+||. +++.+..+..+. ..+.+++|+ ++++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence 9998 577777776554 679999998 888877665543
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=2.7e-10 Score=125.14 Aligned_cols=273 Identities=7% Similarity=-0.001 Sum_probs=176.6
Q ss_pred cceEEEEEecCCceEEEeec--cceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 729 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
..+..++++++|+.+++... ++.++||.+... +. .-|- +.. ....++-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GL------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EE------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ce------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46788999999998777532 343666665411 10 0000 000 00112556789999999
Q ss_pred CCCEEEEEe------CCeEEEEEccCceEEEEEcCC------CCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCce
Q 001396 807 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 871 (1086)
Q Consensus 807 dg~~l~~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~ 871 (1086)
+|+++++.. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998766553 368999999999977766432 235689999984455555555 57899999999998
Q ss_pred eEEEeccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe-
Q 001396 872 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 949 (1086)
Q Consensus 872 ~~~~l~~h~~~v~-~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 949 (1086)
....+.+|..... ...++++|..+.+.+.++.++.|.. .+..++|||||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 8777776533211 1456668888888888888766531 256799999999888753
Q ss_pred C-CeEEEEEcCC---c-----cceecc-ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCC
Q 001396 950 E-THLAIYEAEE---L-----TCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1019 (1086)
Q Consensus 950 d-~~i~vwd~~~---~-----~~~~~~-~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1019 (1086)
. +.+..++... + +....+ ..++......++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 3 3455554321 1 001100 11233456678999999999998889999999986676432222 11
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 1020 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 1020 ~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
...++.+++|.| ++.++++....+.+.+|.
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 124577899998 678888877666554443
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=5.4e-09 Score=125.13 Aligned_cols=332 Identities=10% Similarity=0.051 Sum_probs=192.1
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCc-----------eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..++.++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 36777788899999999999988877654321 112333 4556666654 678999999999998
Q ss_pred eEEecc-cccC-CceEE-EEEecCCCEEEEEEC------CCcEEEEEcCCCeeEEEEcCCCCC-----------------
Q 001396 563 RTYQGL-QLQH-NSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL----------------- 616 (1086)
Q Consensus 563 ~~~~~~-~~~~-~~v~~-~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 616 (1086)
-.+... .... ..+.+ ... .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888764 1000 11111 111 1345666543 799999999999999887643221
Q ss_pred -------------CCCceEEEecCCCEEEEEECCC-------------------cEEEEECCCCCeeeeccccccceeee
Q 001396 617 -------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKL 664 (1086)
Q Consensus 617 -------------~~v~~v~~s~~~~~l~~~~~dg-------------------~i~iw~~~~~~~~~~~~~~~~~v~~~ 664 (1086)
.....++++|++.++++++.++ .|..+|..+++.....+.....
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d---- 305 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD---- 305 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC----
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc----
Confidence 0113578899988998887764 3555555555544433211100
Q ss_pred EEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCC---c
Q 001396 665 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q 741 (1086)
Q Consensus 665 ~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~ 741 (1086)
.|+.. ......-+....+| .
T Consensus 306 -----------------------------------------~wd~~----------------~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 306 -----------------------------------------NWDYT----------------STQPMILADIKIAGKPRK 328 (677)
T ss_dssp -----------------------------------------CSCCC----------------CCSCCEEEEEEETTEEEE
T ss_pred -----------------------------------------ccccc----------------cCCCcEEEecccCCcEee
Confidence 11110 00011112222355 4
Q ss_pred eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceee----------ecCCCCCCCCCeeEEEeecCCCEE
Q 001396 742 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL 811 (1086)
Q Consensus 742 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~l 811 (1086)
.++.++.+|.+.++|...++....-......-..-+| .+|..... ...+...-...-..++++|++.++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 5666667777777776554331110000000000011 12221110 001100000111367889988887
Q ss_pred EEEeC--------------------------------------------CeEEEEEccCceEEEEEcCCCCCeEEEEEcC
Q 001396 812 FSASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNP 847 (1086)
Q Consensus 812 ~~~~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 847 (1086)
++... |.|..||+.+++.+..+.. ..++....++.
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~ 486 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT 486 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence 76421 6799999999999888763 33444455666
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCeEEEEEeCCCCEEEE
Q 001396 848 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS 897 (1086)
Q Consensus 848 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s 897 (1086)
++.++++++.||.+++||..+|+.+..+.... ....-+.++++|+.++.
T Consensus 487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 66688889999999999999999998887433 22344667788875554
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.21 E-value=3.6e-08 Score=110.03 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=100.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCC---------cceE-EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~---------~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
.++.++.++.|..+|.++|+.+....... ..+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 57777889999999999999987765422 2222 2222 33478889999999999999998887665
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccC--CceEEEEEecCCCEEEEEECCCcEEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i 598 (1086)
........... .+ ..++.++. ++.|+.+|..+|+.+..+....... ......... +..++.++.++.+..
T Consensus 131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 54332222222 23 45555543 6689999999999887766533000 000112222 457888888999999
Q ss_pred EEcCCCeeEEEEcCC
Q 001396 599 WDMNKVQLLTTIDAG 613 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~ 613 (1086)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988776543
No 229
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.21 E-value=8.8e-06 Score=95.62 Aligned_cols=521 Identities=8% Similarity=-0.023 Sum_probs=271.3
Q ss_pred CCCEEEEEEecCCC-ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEeecCCcceEEEee
Q 001396 410 SKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~ 487 (1086)
....|+..++.... ... .+.........++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34558888887542 111 12233445788999997774 455555678899999876532 2233333356788888
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence 543 34466666778999999988765544444444567789999986666655421 135677777654333222222
Q ss_pred ccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
. ....+.+++++++..|+.+. ..+.|...|+............ ......+++..+ .++++-...+.|...|..
T Consensus 169 ~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 169 E---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp S---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred C---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 2 25678999999877777765 5678899988765443333211 223467787655 344444456789999988
Q ss_pred CCCeeeeccccccceeeeEEc-cCCCcee-----ccccCC-eeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 647 ESNSVDAAGVLSDNLRKLSVN-PISTVTG-----AGIANG-SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 647 ~~~~~~~~~~~~~~v~~~~~~-p~~~~~~-----~~~~~~-~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
+++....+.........+++. |.....+ ...+.+ .+.+. +|..........+|..
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~--------------- 304 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVK--------------- 304 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCC---------------
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhe---------------
Confidence 776655554333223333332 1100000 000000 00000 0000000000000000
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
+. ....+|. +..+.++..+..+.|+..++..... . .....+. .-..+
T Consensus 305 --l~----~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~ 351 (619)
T 3s94_A 305 --LL----ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHA 351 (619)
T ss_dssp --BC----TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSE
T ss_pred --ec----ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCcc
Confidence 00 0000000 0011122223333444444332110 0 0111111 23356
Q ss_pred eEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001396 800 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
..++|.+.+..|..++ .+.|..+++........+...-.....+|+...++++.++-+..+.|.+.++........+.
T Consensus 352 ~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~ 431 (619)
T 3s94_A 352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS 431 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEE
Confidence 7899999776666665 57899999875443333433335667899986456566666667899999987543322223
Q ss_pred cccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--eCCeE
Q 001396 878 GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHL 953 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i 953 (1086)
..-....+|++.|...+|..+.. ...|...+++...... .+ .... .....+++++++..|..+ ..+.|
T Consensus 432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I 503 (619)
T 3s94_A 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKI 503 (619)
T ss_dssp TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EE---eCCC---CCCeeeEEcccCCEEEEEECCCCEE
Confidence 34456889999997445544432 3567777776533211 11 1111 256789999988877765 45678
Q ss_pred EEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 954 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
..+++.... ...+..+......+++...+ ...++-...+.|..-+..+|
T Consensus 504 ~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 504 EVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 888886332 33222222222334555433 33333334456777777776
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=2.7e-10 Score=123.95 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=133.7
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
..+..+++++...++++|+.++ +++|+++.... .... ....+.. |++++| |++ +|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence 3789999999999999999986 67799765431 1111 1224666 999999 888 67777 789999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+||+.+.........|...+.++.+.+. .+++++.||.|.+||+....... ....|++++|||+| ++.+.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 9999887776777778888888776432 28889999999999999776543 33589999999999 45555
Q ss_pred eCCCCceeEEEEeCCCCee--eeEEec------ccccCCceEEEEEecCCCEEEE
Q 001396 543 TSKEGESFLVEWNESEGAI--KRTYQG------LQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~--~~~~~~------~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
. ++.+++|+...++. .+++.. +..+...|.++.|.+++.++++
T Consensus 180 ~----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 K----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp T----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 4 66799998887775 555521 1113478999999999888776
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=7.6e-09 Score=112.57 Aligned_cols=225 Identities=9% Similarity=-0.008 Sum_probs=145.8
Q ss_pred eEEEEEecCCceE-EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 731 ISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 731 i~~l~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
....+|++++..+ ++...++.|..|+.... . ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence 4567899975544 44445677777765432 1 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEccCceEEEEEcCC----CCCeEEEEEcCCCCCEEEEEeC------CCeEEEEEcCCceeEEEeccc
Q 001396 810 YLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 879 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h 879 (1086)
++++. ++.|.+||..+++........ ...+..++++| +|+++++... .+.|..++ +++... +..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC
Confidence 87765 455999999888764433211 23588999999 7887765442 24566666 455433 3334
Q ss_pred cCCeEEEEEeCCCCEEEEE-eCCCcEEEEECC--CC-ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEE
Q 001396 880 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 954 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~-s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~ 954 (1086)
......++|+|||+.|+.+ +.++.|.+|+++ ++ .......+....... .....++++++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4457789999999876554 557889999986 54 322212222222111 235789999999987775 467899
Q ss_pred EEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEEECC
Q 001396 955 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 993 (1086)
Q Consensus 955 vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~~~D 993 (1086)
+|+. +++.+..+ ..+...+++++|+ +|++.|+.++..
T Consensus 255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 56665543 3345679999999 898877655544
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=3.4e-08 Score=110.24 Aligned_cols=276 Identities=10% Similarity=0.028 Sum_probs=173.2
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.++.|..+|..+|+.+.......- . . ........+.+. ...++..+++++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-------~-~--~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEK-------D-G--WFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCccc-------c-c--cccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 66777789999999999998754332100 0 0 000001222221 12246678888899999999999997
Q ss_pred ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce-----EEEeecccCCccEEEE
Q 001396 424 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 498 (1086)
Q Consensus 424 ~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~l~s 498 (1086)
.+-. .............. ++ .++.++.++.|..+|..+|+.+.......... ..... .+..++.
T Consensus 125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 6532 22221111122222 33 47778889999999999999988776433221 11122 1246888
Q ss_pred EEcCCeEEEEEcCCCceeEEecCCCCc----------eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 499 ISVDGKIKAWLYDSLGARVDYDAPGLG----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~~~~~~~~~~~~~----------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
++.++.+..+|..+++........... +...... .+..++.++. ++.++.+|..+|+.+.....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAY----NGNLTALDLRSGQIMWKREL- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECT----TSCEEEEETTTCCEEEEECC-
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEec----CcEEEEEECCCCcEEeeccC-
Confidence 888999999999998887765433210 1010011 2455555543 55799999999988766543
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 569 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.....+.. ++..++.++.++.|..+|..+++.+........ ......... +..+++++.+|.+.++|..++
T Consensus 268 ----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 268 ----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVLY--NGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp ----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEEE--TTEEEEECTTSEEEEEETTTC
T ss_pred ----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEEE--CCEEEEEeCCCeEEEEECCCC
Confidence 22334433 467889999999999999999998877752211 112233332 568889999999999999999
Q ss_pred Ceeeeccc
Q 001396 649 NSVDAAGV 656 (1086)
Q Consensus 649 ~~~~~~~~ 656 (1086)
+.+.....
T Consensus 339 ~~~~~~~~ 346 (376)
T 3q7m_A 339 RFVAQQKV 346 (376)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 87765543
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=4.6e-09 Score=113.25 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=152.6
Q ss_pred CCCccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 388 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3445677899999999 5566667889999988 443 22 3445667789999999998 5666556678999997
Q ss_pred CCCceeEEeecC----CcceEEEeecccCCccEEEE----EEc-------------CCeEEEEEcCCCceeEEecCCCCc
Q 001396 467 VTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG 525 (1086)
Q Consensus 467 ~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~ 525 (1086)
. |+........ ...+..+++ +++|.+.++ |.. .+.|..||..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 5 6543222111 123556777 457777776 321 245677776555544333 3345
Q ss_pred eEEEEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeee--eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 526 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
...++|+||++.|+.+.... .+...|++|++..+... ..+... .......++++++|+ |.+++.+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 67899999999887765321 01257999998765421 112111 124456788999998 4444444 4999998
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 602 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 602 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
+++.+..+..+. .+.+++|+++++.|++++.++.
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776553 3789999999999998887643
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=8.2e-09 Score=123.83 Aligned_cols=331 Identities=8% Similarity=0.048 Sum_probs=188.6
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCc----------e-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
..+++++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 47778888899999999999988877654321 0 11222 3556666654 678999999999998
Q ss_pred eEEecc-cc-cCCceEE-EEEecCCCEEEEEE------CCCcEEEEEcCCCeeEEEEcCCCC------------------
Q 001396 563 RTYQGL-QL-QHNSVSV-VHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTIDAGGG------------------ 615 (1086)
Q Consensus 563 ~~~~~~-~~-~~~~v~~-~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~~~~------------------ 615 (1086)
-.+... .. ....+.+ ... .++ .+++++ .+|.|+.||..+|+.+..+.....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 777653 10 0011111 111 133 455543 378999999999999887753110
Q ss_pred -----------CCCCceEEEecCCCEEEEEECCCc-------------------EEEEECCCCCeeeeccccccceeeeE
Q 001396 616 -----------LPENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 616 -----------~~~v~~v~~s~~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
......++++|++.++++++.++. |..+|..+++.....+.....
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d----- 297 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGD----- 297 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTC-----
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcc-----
Confidence 011136789998899999888764 666676666655544321110
Q ss_pred EccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCc---e
Q 001396 666 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---A 742 (1086)
Q Consensus 666 ~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~---~ 742 (1086)
.|+.. ....+.-.....+|+ .
T Consensus 298 ----------------------------------------~wd~~----------------~~~~~~l~d~~~~G~~~~~ 321 (689)
T 1yiq_A 298 ----------------------------------------AWDYT----------------ATQHMILAELPIDGKPRKV 321 (689)
T ss_dssp ----------------------------------------CSCCC----------------CCSCEEEEEEEETTEEEEE
T ss_pred ----------------------------------------ccccc----------------CCCCcEEEeeccCCcEEEE
Confidence 01110 000111111112343 4
Q ss_pred EEEeeccceeEEeeccCCccccCcccccccCCceecCC---------------CCCceeeecCCCCCCCCCeeEEEeecC
Q 001396 743 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR---------------HGPQFMVNDTTDSNSQEAVPCFALSKN 807 (1086)
Q Consensus 743 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~~~v~~l~~s~d 807 (1086)
++.++.+|.++++|...++...........-..-.+.. ++...... +...-...-..++++|+
T Consensus 322 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~--p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 322 LMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT--PAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES--SCTTCSSCSSCCEEETT
T ss_pred EEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC--CCcccccCCCcceECCC
Confidence 56666667777766554433110000000000000000 11111110 00000111234788888
Q ss_pred CCEEEEEe----------------------------------------------CCeEEEEEccCceEEEEEcCCCCCeE
Q 001396 808 DAYLFSAS----------------------------------------------GGVISLYIVMTFKTILTIMPPSPTAT 841 (1086)
Q Consensus 808 g~~l~~~~----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~ 841 (1086)
..++++.. +|.|..||+.+++.+..+..+.. +.
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~ 478 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FN 478 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-cc
Confidence 77777641 26799999999999988765432 33
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCCCEEEE
Q 001396 842 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 897 (1086)
Q Consensus 842 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~s 897 (1086)
.-.++. .+.++++|+.||.++.||..+|+.+.+++...+. ..-+.|+.||+..+.
T Consensus 479 ~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 479 GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 335555 5668999999999999999999999888754332 244777888875443
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=6.5e-09 Score=124.70 Aligned_cols=291 Identities=12% Similarity=0.053 Sum_probs=182.8
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccE-EEEEECCCCCEEEEEeCCCEEEEEEecC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 421 (1086)
+.+++.++.|.-+|..+|+.+-......- ... ..... ..+ ..+++ ++..|++++.|+.|+.+|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQSD-----RHR-----AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCCC-----ccc-----cccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 66677789999999999998765332100 000 00000 000 11122 466888888999999999999
Q ss_pred CCccccceEeccccccEeEEEecC---CCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeecCC-c------------
Q 001396 422 GSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------ 480 (1086)
Q Consensus 422 ~~~~~~~~~~~~h~~~v~~v~~s~---d~~~l~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~-~------------ 480 (1086)
|+.+-.... ..+......+..+| ++. +++..+ .++.|+.||.++|+.+..+.... .
T Consensus 141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 986543211 10111111111112 444 333322 37899999999999988775210 0
Q ss_pred ------------------ceEEEeecccCCccEEEEEEcCCe-------------------EEEEEcCCCceeEEecCCC
Q 001396 481 ------------------PVYSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 481 ------------------~v~~~~~~~~~~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~~~ 523 (1086)
....+++ +++..+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 0013344 344568888887764 9999999999988765432
Q ss_pred C---------ceEEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc---------------------
Q 001396 524 L---------GCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--------------------- 570 (1086)
Q Consensus 524 ~---------~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 570 (1086)
. .........+|+ .++.+.. ++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 122222333665 5655543 78899999999998744321110
Q ss_pred ----c-----------CCceEEEEEecCCCEEEEEEC-------------------------------------------
Q 001396 571 ----Q-----------HNSVSVVHFDTAKDQILAAGD------------------------------------------- 592 (1086)
Q Consensus 571 ----~-----------~~~v~~~~~~~~~~~l~~~s~------------------------------------------- 592 (1086)
. ...-..++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0 001123688998888877532
Q ss_pred --CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccc
Q 001396 593 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 658 (1086)
Q Consensus 593 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 658 (1086)
+|.|+.||+.+++.+.....+.. .....+...+.++++++.||.++.||.++++.+..++...
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 37799999999999988876533 3444667778899999999999999999999988776543
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=1.9e-08 Score=120.30 Aligned_cols=288 Identities=11% Similarity=0.059 Sum_probs=184.5
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.++.|.-+|..+|+.+-......-. .... ....+ .....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~-----~~~~--~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDR-----STGF--KGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCG-----GGGG--GSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCc-----cccc--ccccc-CCCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 566677899999999999988653321000 0000 00000 00011222 46788888899999999999998
Q ss_pred ccccceEeccc-c----ccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeecCCcce----------
Q 001396 424 DARQQLEIDAH-V----GNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAPV---------- 482 (1086)
Q Consensus 424 ~~~~~~~~~~h-~----~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v---------- 482 (1086)
.+-. +..+ . ..+.+.-...++. ++.++. ++.|+.+|.++|+.+.++.......
T Consensus 150 ~~W~---~~~~~~~~~~~~~~~~p~v~~~~---v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 150 EVWH---QNTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp EEEE---EETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred EEee---ecCCcCcCcCcccccCcEEECCE---EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 6543 2222 1 1121111111333 444432 7899999999999998775432110
Q ss_pred ----------------------EEEeecccCCccEEEEEEcCC-------------------eEEEEEcCCCceeEEecC
Q 001396 483 ----------------------YSLCPHAKENIHFIFSISVDG-------------------KIKAWLYDSLGARVDYDA 521 (1086)
Q Consensus 483 ----------------------~~~~~~~~~~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~ 521 (1086)
..+++ ++++.+++.++.++ .|..+|.++++.+..+..
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccCceeEeCCCcccccceeE--cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 12344 33456777777664 599999999998877654
Q ss_pred CCC---------ceEEEEEecCC---CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc--------CCce------
Q 001396 522 PGL---------GCTRMAYSANG---RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--------HNSV------ 575 (1086)
Q Consensus 522 ~~~---------~i~~~~~s~d~---~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--------~~~v------ 575 (1086)
... ....+....+| ..++.+.. ++.++++|..+|+.+..+...... ...+
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPK----NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEECC----CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 221 12223344577 56666653 778999999999988766532100 0001
Q ss_pred ------------------EEEEEecCCCEEEEEEC-------------------------------------------CC
Q 001396 576 ------------------SVVHFDTAKDQILAAGD-------------------------------------------DH 594 (1086)
Q Consensus 576 ------------------~~~~~~~~~~~l~~~s~-------------------------------------------dg 594 (1086)
..++++|++..+++... .|
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 15688999888887543 27
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.|..||+.+++.+........ +....+..++.++++++.||.+++||..+++.+..+..
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~~---~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEeCCCCcEEeecCCCCC---CcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 899999999999988865432 45566777888999999999999999999988877764
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=1.4e-08 Score=110.15 Aligned_cols=238 Identities=12% Similarity=0.074 Sum_probs=155.4
Q ss_pred eeec--CCCceEEEEEeccCcEEEEecCCC----ceeeeeeeeeeeccccceeeeeeeecC-CCccEEEEEECCCCCEEE
Q 001396 334 MDFH--PVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 334 ~~~s--pdg~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~la 406 (1086)
..++ +++++|++.|..+++|.|+|+.+. +..+. .+. ..+... .......+..+||| .++
T Consensus 87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~-----ie~--------~~~~~~~g~s~Ph~~~~~pdG-i~V 152 (462)
T 2ece_A 87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV-----IEP--------EEVKKVSGYSRLHTVHCGPDA-IYI 152 (462)
T ss_dssp TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE-----ECH--------HHHHHHHCEEEEEEEEECSSC-EEE
T ss_pred cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee-----ech--------hhcccccCCCcccceeECCCe-EEE
Confidence 3457 899999999999999999999755 22221 100 000000 11245567889999 666
Q ss_pred EEeCC------CEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEe-------------------CCCc
Q 001396 407 VAYSK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKT 460 (1086)
Q Consensus 407 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~-------------------~d~~ 460 (1086)
++..+ +.|.+.|.++++.+.... ..... .--..+.|+|+++ .+++.. .+.+
T Consensus 153 s~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 153 SALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp EEEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred EcCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCE
Confidence 66554 789999999988666332 11222 2234688999999 677663 3689
Q ss_pred EEEEeCCCCceeEEeecC--CcceEEEeecccCCccEEEEEE------cCCeEEEEEcCCCcee--EE--ecCC------
Q 001396 461 IKVWDAVTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP------ 522 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~--~~--~~~~------ 522 (1086)
|.+||+.+++.+.++... ......+.|..+++++++++++ .+++|.+|..+.+.-. .. +...
T Consensus 230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence 999999999888887653 1344566665577888877776 4668888766543211 11 1110
Q ss_pred ----------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEecccc-----------cCCceEEE
Q 001396 523 ----------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQL-----------QHNSVSVV 578 (1086)
Q Consensus 523 ----------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~-----------~~~~v~~~ 578 (1086)
......+.+|+||++|+++.. +.+.|.++|+.. .+.+..+..... -......+
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~ 386 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML 386 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence 234678999999999998865 356899999853 344444433210 00135789
Q ss_pred EEecCCCEEEEEE
Q 001396 579 HFDTAKDQILAAG 591 (1086)
Q Consensus 579 ~~~~~~~~l~~~s 591 (1086)
.++|||++|+++.
T Consensus 387 ~lSpDGk~LyVaN 399 (462)
T 2ece_A 387 EISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSSEEEEEC
T ss_pred EEcCCCCEEEEEc
Confidence 9999999999986
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=4e-08 Score=106.59 Aligned_cols=233 Identities=14% Similarity=0.086 Sum_probs=152.4
Q ss_pred Eee--cCCCEEEEEe--CCeEEEEEccCc----eEEEEEc------C-CCCCeEEEEEcCCCCCEEEEEeCC------Ce
Q 001396 803 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM------P-PSPTATSLAFNPHDNNVIAIGMDD------ST 861 (1086)
Q Consensus 803 ~~s--~dg~~l~~~~--dg~i~iwd~~~~----~~~~~~~------~-~~~~i~~l~~s~~d~~~lasg~~d------g~ 861 (1086)
.++ +++++|++.+ ++.|.++|+.+. +...++. . ....-..+..+| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 347 8899998887 588999999765 6667663 1 112456788899 77 76666555 78
Q ss_pred EEEEEcCCceeEEEeccccC---CeEEEEEeCCCCEEEEEe-------------------CCCcEEEEECCCCceeeeee
Q 001396 862 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 862 v~iwd~~~~~~~~~l~~h~~---~v~~l~~spdg~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~ 919 (1086)
|.++|..+++.+.++..-.+ --+.+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999999873222 234588999999999874 36789999999864322 3
Q ss_pred eeccCCCccCCCCceEEEE--ecCCCEEEEE-------eCCeEEEEEcCCccceecc----cc----C-----------C
Q 001396 920 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW----FP----I-----------S 971 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~--s~dg~~l~~~-------~d~~i~vwd~~~~~~~~~~----~~----~-----------h 971 (1086)
+....... ....+.| +|+|+++.++ .+++|.+|....|+..... .. + -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321111 2445656 9999998873 3457776665443211000 00 0 0
Q ss_pred ccCEEEEEEeCCCCEEEEEEC-CCcEEEEEcCC---CceeeeeccccccCCCCc----cCcccceEEEECCCCCCEEEEE
Q 001396 972 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1043 (1086)
Q Consensus 972 ~~~v~~l~fs~dg~~l~s~~~-Dg~v~vWd~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~~~ 1043 (1086)
......+.+|+||++|.++.. .+.|.++|+.. .+++..+..........+ .....|..++++| ||+.|+++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 245788999999999887765 57899999863 355555543211000000 0012467899999 78988888
Q ss_pred e
Q 001396 1044 L 1044 (1086)
Q Consensus 1044 ~ 1044 (1086)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 8
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=5.2e-09 Score=114.48 Aligned_cols=302 Identities=11% Similarity=0.048 Sum_probs=176.6
Q ss_pred eEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE
Q 001396 439 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 518 (1086)
Q Consensus 439 ~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 518 (1086)
.+..+..++. +..++.++.|..|| .+|+.+.....+...+.++.. ..++ .++.++.+ |..+|. +++....
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGG
T ss_pred cCceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEE
Confidence 3455556665 66677788999999 899887665544445555555 3344 45555544 777875 4443333
Q ss_pred ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEE
Q 001396 519 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 519 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 598 (1086)
+...........+. +..+..++. ++.|+.+|.. ++....+.... ..+.++...+++. ++.++.++.|..
T Consensus 93 ~~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp SCC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred EECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 33222222233333 444555543 5579999988 77666655433 4456666776665 667778899999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceecccc
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 678 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 678 (1086)
+|.. ++......... ..+.++.+.+++.+.+ ++ +.+..++ .++........
T Consensus 162 ~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~---------------------- 212 (330)
T 3hxj_A 162 INPD-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA---------------------- 212 (330)
T ss_dssp ECTT-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC----------------------
T ss_pred ECCC-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc----------------------
Confidence 9998 77776665432 2356666666665443 33 5566665 33221111100
Q ss_pred CCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 679 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 679 ~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCC
Q 001396 759 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP 838 (1086)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~ 838 (1086)
....+.++++.++|...+...++.+..+|. +++.+..+.....
T Consensus 213 ------------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 213 ------------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp ------------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred ------------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 011233444455555444444555555553 4444444443333
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 839 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
.+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+++ .++.+|.+++.....
T Consensus 256 ~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 256 IESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred ccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 344455655 55 4556888888999996 677776666555667778887787654 478899998877664
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.07 E-value=7.4e-09 Score=113.26 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=175.7
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
....+..+|. +..|+.++.|..|| .+|+.+... ..+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence 4556667775 56677889999999 888865431 11334567788877776444 4444
Q ss_pred CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC
Q 001396 412 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. |+.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 5554332 22222223333443 44 46678888999999988 8887777655555555554 33
Q ss_pred CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 571 (1086)
++ .++.++.++.|..+|.. ++....+......+.++.+.+++...+.. +.|+.+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 47778888999999988 66666666656667777888888866554 2389999 7777666655433
Q ss_pred CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 572 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
..+.++...+++ .+..++.++.|..+|. +++.+..+..... .+..+.+.+++ .|.+++.+|.|..+|. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 567788888876 5667777888988874 5666666554332 23455666556 5667888888999985 55555
Q ss_pred eecc
Q 001396 652 DAAG 655 (1086)
Q Consensus 652 ~~~~ 655 (1086)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=1e-07 Score=107.35 Aligned_cols=344 Identities=11% Similarity=0.046 Sum_probs=200.0
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE----------cCCeEEEEEcCCCceeEEe
Q 001396 450 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 450 l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~ 519 (1086)
..+.||+..|.++|+-+.+++.++.+......-. .-|-.++....++..+ .+|. . .+
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~--~~ 82 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------R--IH 82 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------S--SC
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------e--ec
Confidence 3688999999999999999999988753221000 0000000000011000 0010 0 00
Q ss_pred cCCCCceEEEEE---ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEE-e-cCCCEEEEEE---
Q 001396 520 DAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG--- 591 (1086)
Q Consensus 520 ~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s--- 591 (1086)
......-..+++ .+||++++.+.. .+..|.+.|+.+.+..+.+.-.. ......+++ + |+++++++++
T Consensus 83 ~~gd~hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~ 157 (595)
T 1fwx_A 83 DNGDLHHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDE 157 (595)
T ss_dssp CCCCBCCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSC
T ss_pred ccCCCCccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccc
Confidence 000001122333 248999988653 26689999999999888664332 245788887 5 9999999985
Q ss_pred ---------------CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 592 ---------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 592 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.++.+.+.|..+.+...++...+. ...++++|+|+++++.+.+..- +..+.....
T Consensus 158 ~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~~ 227 (595)
T 1fwx_A 158 TPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMTA 227 (595)
T ss_dssp EESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHTC
T ss_pred cccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhccc
Confidence 345799999999999998876542 4678999999999999876421 100000000
Q ss_pred cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEE
Q 001396 657 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 736 (1086)
Q Consensus 657 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 736 (1086)
.....+.+..... .. .+
T Consensus 228 --~~~d~v~V~~~~~-----------------------~~--------------------------------------~~ 244 (595)
T 1fwx_A 228 --AEMDHIVVFNIAE-----------------------IE--------------------------------------KA 244 (595)
T ss_dssp --CSEEEEEEEEHHH-----------------------HH--------------------------------------HH
T ss_pred --cccceEEEeeccc-----------------------ee--------------------------------------Ee
Confidence 0111111100000 00 00
Q ss_pred ecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCc-eeeecCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001396 737 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 815 (1086)
Q Consensus 737 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 815 (1086)
.++|+.... +.|.|.|....+ +.. +.... -.....++.++|||+++++++
T Consensus 245 v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 245 IAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVAG 295 (595)
T ss_dssp HHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEEC
T ss_pred ccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEeC
Confidence 111211111 224444332200 111 11111 122455799999999999987
Q ss_pred --CCeEEEEEccCce------------EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------ce
Q 001396 816 --GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SE 871 (1086)
Q Consensus 816 --dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~~ 871 (1086)
+++|.++|+.+.+ ...... -......++|++ +|...++..-|++|.+||+.+ .+
T Consensus 296 ~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 296 KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred CCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 5889999999763 333332 345678999999 776666778899999999987 45
Q ss_pred eEEEeccccCCe-----EEEEEeCCCCEEEEEeC---CCc----------EEEEECCCCcee
Q 001396 872 VISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQ 915 (1086)
Q Consensus 872 ~~~~l~~h~~~v-----~~l~~spdg~~l~s~s~---dg~----------i~iwd~~~~~~~ 915 (1086)
.+.++..|-.+- .++.++|||++|+++.. |+- -.++|+++++..
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 677776654421 22356899999998753 542 288999765533
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.01 E-value=1.4e-08 Score=114.22 Aligned_cols=227 Identities=9% Similarity=0.007 Sum_probs=155.7
Q ss_pred EEeec-----CCCEEEEEe--CCeEEEEEccCceEEEEEcCC-CCCeEEEEE-c-CCCCCEEEEEe--------------
Q 001396 802 FALSK-----NDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM-------------- 857 (1086)
Q Consensus 802 l~~s~-----dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~-------------- 857 (1086)
.++|. ||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55565 899998886 477999999999988855432 345788888 5 8 788888774
Q ss_pred ----CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC-------------------------------
Q 001396 858 ----DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------------------------------- 902 (1086)
Q Consensus 858 ----~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg------------------------------- 902 (1086)
.++.+.+.|..+.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34589999999999888876322 456788999999999888653
Q ss_pred -------cEEEEECCCCceee-eeeeeccCCCccCCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCcc----------
Q 001396 903 -------QIFVWDVDGWGIQT-CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---------- 962 (1086)
Q Consensus 903 -------~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~---------- 962 (1086)
.|.|.|..+.+... ...+... ....++.+||||++++++ .+++|.++|+.+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35556655411001 1122222 135679999999999985 56789999999763
Q ss_pred --ceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC----------CceeeeeccccccCCCCccCcccceEE
Q 001396 963 --CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAI 1030 (1086)
Q Consensus 963 --~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1086)
...+... ......++|++||...++...|+.|.+||+++ ...+.++... +.|. .....+.+
T Consensus 321 ~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpG----h~~~~~g~ 393 (595)
T 1fwx_A 321 SAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPG----HLKTVMGE 393 (595)
T ss_dssp GGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEE----EEEETTTT
T ss_pred cceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-cccc----cceeccce
Confidence 2222222 46788999999995455677899999999988 4455555421 1111 01122334
Q ss_pred EECCCCCCEEEEEeC
Q 001396 1031 AAHPLKPTQFAVGLT 1045 (1086)
Q Consensus 1031 ~~~p~~~~~l~~~~~ 1045 (1086)
+.+| ||++|+++..
T Consensus 394 t~~~-DGk~l~~~Nk 407 (595)
T 1fwx_A 394 TLDA-TNDWLVCLSK 407 (595)
T ss_dssp STTC-CSSEEEEEES
T ss_pred EeCC-CCCEEEEcCC
Confidence 5678 7888887765
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.99 E-value=4.3e-10 Score=124.47 Aligned_cols=190 Identities=7% Similarity=-0.037 Sum_probs=113.4
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
++..+++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||.++|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678899999999999999999986653 333 4565666667777 677778999999999999998877754422
Q ss_pred ceEEEeecccC-CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 481 PVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 481 ~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
..... .|.- ++..+++++.++.|+.||..+++.+..+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~~~--sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELVQA--SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHHTT--CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccccc--CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 11100 1111 33478888999999999999988877665543 2345678888888775 678999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCC---CEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876665322 1222233332 5688899999999999999998887764
No 244
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.96 E-value=0.00024 Score=83.56 Aligned_cols=531 Identities=9% Similarity=-0.002 Sum_probs=277.7
Q ss_pred eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eCCCEEEEEEec
Q 001396 342 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 420 (1086)
Q Consensus 342 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 420 (1086)
+|+.+ ..+.|+..|+.+........ + ..-..+..++|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 44443 34778888987654322101 1 123467899999976666655 457889999987
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE-
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 499 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~- 499 (1086)
...... .+.........+++.+.++. ++++-...+.|.+.++........+...-.....+++.|. +|.++++-
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 653221 12222245778999877665 4556666788999997654432223234455678888654 34444443
Q ss_pred EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEE
Q 001396 500 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 579 (1086)
Q Consensus 500 s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 579 (1086)
+..+.|...+++......... .......++++++++.|+.+-. +...|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444433 4456789999999888877653 256799999876544 3343322 3456777
Q ss_pred EecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE-EecCCCEEEEEECCCcEEEEECCCCCeeeecccc
Q 001396 580 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 580 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
+.. ..++.+. ..+.|...|..+++....+..... ....+. +++..+. + ...+. ..
T Consensus 215 v~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n~C~----~~ 271 (628)
T 4a0p_A 215 QYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WNECA----SS 271 (628)
T ss_dssp EET--TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CCTTT----TT
T ss_pred EEC--CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ceEec----cC
Confidence 764 3555544 578899999888776666543211 123332 2221110 0 00000 00
Q ss_pred ccceeeeEEc-cCCCceeccccCCeeee-cCCC-CCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEE
Q 001396 658 SDNLRKLSVN-PISTVTGAGIANGSVSV-NEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 734 (1086)
Q Consensus 658 ~~~v~~~~~~-p~~~~~~~~~~~~~~~~-~~~~-s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l 734 (1086)
......+.+. |.+... ..+..+.... .+.. .+....++.+. ...|+-..+..... ....++. .....+.++
T Consensus 272 ng~C~~~C~~~~~~~~~-C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~l 345 (628)
T 4a0p_A 272 NGHCSHLCLAVPVGGFV-CGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAI 345 (628)
T ss_dssp GGGCSSEEEEETTTEEE-EECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEE
T ss_pred CCCcchhhhcCCCCCee-EEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEE
Confidence 0000001111 000000 0000000000 0000 01112222222 23343333321110 0111111 123457789
Q ss_pred EEecCCceEEEeec-cceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEE
Q 001396 735 TYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 813 (1086)
Q Consensus 735 ~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 813 (1086)
+|.+....|..+.. .+.|..++.+.... .. +.............+..+|+...++.|..
T Consensus 346 d~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 346 DYDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEE
T ss_pred EEecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEE
Confidence 99887666655543 46666554432110 00 10000000002345789999998887766
Q ss_pred Ee--CCeEEEEEccCceEEEEE-cCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeEEEeccccCCeEEEEE
Q 001396 814 AS--GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVF 888 (1086)
Q Consensus 814 ~~--dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~v~~l~~ 888 (1086)
+. .+.|.+.++. |+....+ ........++++.|..|.++.+-.... .|...++............-.....|++
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~ 484 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALAL 484 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEE
Confidence 65 4789999986 4444333 334567899999995565555543333 5776777633332222323446789999
Q ss_pred eCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCcccee
Q 001396 889 SDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLK 965 (1086)
Q Consensus 889 spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~ 965 (1086)
.++++.|..+. ..+.|...+++...... +.. ... .....+++.. ..|.. ...+.|...|..+|+...
T Consensus 485 D~~~~~LYw~D~~~~~I~~~~~dG~~r~~---~~~--~~~---~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 485 DSRLGKLFWADSDLRRIESSDLSGANRIV---LED--SNI---LQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEE---EEC--SSC---SCEEEEEEET--TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred eCCCCEEEEEeCCCCEEEEEeCCCCceEE---EEc--CCC---CCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcE
Confidence 99877766554 45789999997643221 211 111 1245666644 33433 345667777776666444
No 245
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.95 E-value=0.00049 Score=86.43 Aligned_cols=570 Identities=11% Similarity=0.079 Sum_probs=282.3
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCc-----cccceEeccccccEeEEEecCCC---CcEEEEEEe---CCCcEE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTIK 462 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~v~~s~d~---~~l~l~s~~---~d~~i~ 462 (1086)
.++++-.+| +|..|+..|.=.+|.+..... +.....+ ..-++|.+++..... .. .+++++ .+|+++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSLR 406 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeEE
Confidence 567777655 788888888777777765322 1211122 344688888875421 21 344333 567888
Q ss_pred EEeCCCC-ceeEE--eecCCcceEEEeecc-cCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--CCceEEEEE--ecC
Q 001396 463 VWDAVTG-SRTYS--FEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAY--SAN 534 (1086)
Q Consensus 463 iwd~~~~-~~~~~--~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~--s~d 534 (1086)
+..-.-+ +.... +. .-..++.+.... +....+|+.+..+.+ +++.+... ........ ......++. ..+
T Consensus 407 ~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~ 483 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNVAH 483 (1158)
T ss_dssp EEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEETT
T ss_pred EEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEcCC
Confidence 7742211 11111 22 123344443221 123457777666665 55554321 22222111 111111111 122
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
+ .++=.. ...|++.+...+..+..+.... ...|...+.+ +.+++.++ .+.+.++.+..+++.......
T Consensus 484 ~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~- 551 (1158)
T 3ei3_A 484 Q-QLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTE- 551 (1158)
T ss_dssp T-EEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEE-
T ss_pred C-eEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccC-
Confidence 2 343333 2237777766555555555433 2456666654 34666665 678888888766533221111
Q ss_pred CCCCCceEEEecC------CCEEEEEEC-CCcEEEEECCCCCeeeeccccc-cceeeeEEccCCCceeccccCCeeeecC
Q 001396 615 GLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 615 ~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
-...|.|+++.|. +.++++|.. |++++|+++.+.+.+....-.. ....++.+. .+
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~~-- 614 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------TF-- 614 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------EE--
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------Ee--
Confidence 1235888988763 479999997 9999999998765443221110 112222221 01
Q ss_pred CCCCCcccceeccccCccceeeeeecC--CccccccccCCcccccceEEEEEecCCc-eEEEeeccceeEEeeccCCccc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLT 763 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~ 763 (1086)
....++..|-.||.+..+.++... ........+ ...++.=..+...|. .+++.+..-.+ ++.-+
T Consensus 615 ---~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~l-iy~~~----- 681 (1158)
T 3ei3_A 615 ---ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTV-IYSSN----- 681 (1158)
T ss_dssp ---TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEE-EEESS-----
T ss_pred ---CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEE-EEEcC-----
Confidence 123456666666766554443211 010100110 112232223333332 23333332222 22111
Q ss_pred cCcccccccCCceecCCCCCceeeecCCCCCCCCCee-EEEeecC--CCEEEEEeCCeEEEEEccCce--EEEEEcCCCC
Q 001396 764 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSKN--DAYLFSASGGVISLYIVMTFK--TILTIMPPSP 838 (1086)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~-~l~~s~d--g~~l~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 838 (1086)
+. +....+ ....+. ...|+.. ..-++..+++.++|..+.+.. .++++. -..
T Consensus 682 ------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~ 737 (1158)
T 3ei3_A 682 ------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYE 737 (1158)
T ss_dssp ------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSS
T ss_pred ------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCC
Confidence 10 111111 111222 2234332 234555556668887765322 223332 335
Q ss_pred CeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CeEEEEEcCC
Q 001396 839 TATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNARS 869 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~v~iwd~~~ 869 (1086)
.++.++++| ..+.++++..+ +.|++.|-.+
T Consensus 738 Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t 816 (1158)
T 3ei3_A 738 SPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT 816 (1158)
T ss_dssp EEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT
T ss_pred CceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC
Confidence 677888887 55554443211 2467777777
Q ss_pred ceeEEEecc-ccCCeEEEE---EeCC-CCEEEEEe----------CCCcEEEEECCCCceeeeeeeeccCCCccCCCCce
Q 001396 870 SEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 870 ~~~~~~l~~-h~~~v~~l~---~spd-g~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
.+.+..+.- ....+.+++ |..+ ..+|+.|. ..|.|.++++..++.... .....+ +.++
T Consensus 817 ~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv-~~~~v~------g~v~ 889 (1158)
T 3ei3_A 817 FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV-AEKEVK------GAVY 889 (1158)
T ss_dssp CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE-EEEEES------SCEE
T ss_pred CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE-EEEEcC------CcCE
Confidence 766554432 223345544 3322 46888775 347899999974332211 111112 3566
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC--CCceeeeecc
Q 001396 935 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILS 1012 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~--~~~~~~~~~~ 1012 (1086)
+++-- +| +|+++-.+.+++|++...+.++ ....+-..|..+.....|.+++.|..-..|.+.... .+++.-.-.
T Consensus 890 al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~- 965 (1158)
T 3ei3_A 890 SMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR- 965 (1158)
T ss_dssp EEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE-
T ss_pred EEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe-
Confidence 66533 33 7777888999999998655433 111111113233333456788888777777765543 333321111
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1013 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
.-.+.+.+++.|-- ...++.++.+|.|.+...+..
T Consensus 966 --------D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 966 --------DFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp --------CCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTT
T ss_pred --------ecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCC
Confidence 12234566777763 468899999999999988653
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=1e-06 Score=105.42 Aligned_cols=375 Identities=13% Similarity=0.138 Sum_probs=207.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcce-----------EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 519 (1086)
.++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46667778999999999999998875432210 11222 2347888899999999999999988876
Q ss_pred cCCCC----ceEEEEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeeeeEEecccc-----------------------
Q 001396 520 DAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------------- 570 (1086)
Q Consensus 520 ~~~~~----~i~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 570 (1086)
..... .+.+.-.-.++ .++.+.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 55321 11111011244 444443221 1257899999999999887753210
Q ss_pred -----cCCceEEEEEecCCCEEEEEECCC-------------------cEEEEEcCCCeeEEEEcCCCCC-------CCC
Q 001396 571 -----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PEN 619 (1086)
Q Consensus 571 -----~~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v 619 (1086)
.......+++.|+...++.++.++ .|..+|..+|+.+..++...+. ...
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 001112468888888998887766 3999999999999888653221 111
Q ss_pred ceEEEecCCC---EEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 620 PRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 620 ~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
....+..+|+ .+++++.+|.+.++|..+++.+......... +...+.+ ..+..........+++.
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~-- 370 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP-- 370 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC--
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe--
Confidence 2222334665 6888999999999999999887654422210 0001110 00000000000000000
Q ss_pred eccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCce
Q 001396 697 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 776 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 776 (1086)
.+..|.......-..++++|+...+.+...+-...+.. .. ..
T Consensus 371 ----------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~-~~---------------~~ 412 (668)
T 1kv9_A 371 ----------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN-EG---------------KD 412 (668)
T ss_dssp ----------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC-CG---------------GG
T ss_pred ----------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEeee-ec---------------cc
Confidence 00011100001112357888877666655442221110 00 00
Q ss_pred ecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEE-EEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEE
Q 001396 777 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854 (1086)
Q Consensus 777 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 854 (1086)
|....+. . .... + ++..++ ... +|.|..||+.+++.+.+...+. ......+.. .+.+++
T Consensus 413 ~~~~~~~------~----~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf 473 (668)
T 1kv9_A 413 FVTRKAF------N----TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVF 473 (668)
T ss_dssp CCCCSSC------C----CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEE
T ss_pred ccccccc------c----cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEE
Confidence 1000000 0 0000 0 111111 122 4789999999999988776432 222333444 456888
Q ss_pred EEeCCCeEEEEEcCCceeEEEeccccCCe-EEEEEeCCCC-EEEEEe
Q 001396 855 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 899 (1086)
Q Consensus 855 sg~~dg~v~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~-~l~s~s 899 (1086)
+|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 89999999999999999998887543211 2244556776 444443
No 247
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.92 E-value=0.00033 Score=82.25 Aligned_cols=501 Identities=9% Similarity=-0.049 Sum_probs=255.2
Q ss_pred CccEEEEEECCCCCEEEEEe-CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
-..+..++|++.+..|..+. ..+.|..+++++..... ..+.........+++.+.++. ++++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 35678999999777776654 46789999987653211 122233356889999997665 556666788999999765
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
......+...-.....+++.+. +|.++++-- ..+.|...+++.................++++++++.|+.+-. +
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~ 191 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---K 191 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---T
T ss_pred CCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---C
Confidence 4433333234455677888554 333444432 2467777777655444444444556789999998888877643 2
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-ECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe-
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN- 625 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s- 625 (1086)
...|...|+..........+.. .....+++..+ .++.+ ...+.|...|..+++....+.... .....+++.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~ 264 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFS 264 (619)
T ss_dssp TCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECC
T ss_pred CCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEc
Confidence 5679999987654433333222 23346666554 45554 467789999988887665554321 112333332
Q ss_pred cCCCEEEEEECCCcEEEEECCCCC--eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCc
Q 001396 626 KNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 703 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 703 (1086)
+..+-. +..... ...+. .+...........| ..|.+-.+......+ . .....+|+.+ ..+.
T Consensus 265 ~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~~C--~C~~g~~l~~d~~~C---~----~~~~~~Ll~~-~~~~ 327 (619)
T 3s94_A 265 QQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFYQC--ACPTGVKLLENGKTC---K----DGATELLLLA-RRTD 327 (619)
T ss_dssp GGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSEEE--ECCTTCCBCTTSSCB---C----SSCSEEEEEE-ESSC
T ss_pred cccCCC--cccccc-----CCCCcccceEECCCCCCCceE--eCCchheecccCccc---C----CCCceEEEEE-cccc
Confidence 211000 000000 00000 00000000000000 111111110000000 0 0011122222 2345
Q ss_pred cceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEee-ccceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 704 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 704 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
|+..++...... .+.++.. ....+.+++|.+.+..|..+. ..+.|..++.+...
T Consensus 328 i~~i~l~~~~~~---~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------------------- 382 (619)
T 3s94_A 328 LRRISLDTPDFT---DIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------------------- 382 (619)
T ss_dssp EEEEESSSTTCC---CEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------------
T ss_pred eEEEecCCCccc---eeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---------------------
Confidence 555554422211 1111111 234567899988655555444 45666666543211
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC-C
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D 859 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-d 859 (1086)
. ..... ..-.....+|+...+..|..+. .+.|.+.++........+...-.....+++.|..|.+..+-.. .
T Consensus 383 ~-~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~ 457 (619)
T 3s94_A 383 S-QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI 457 (619)
T ss_dssp C-EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS
T ss_pred c-EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC
Confidence 0 00000 0223456899998666666665 4789999987554333333344678999999944555554322 3
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEE
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 938 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 938 (1086)
+.|...++............-.....|++.++++.|..+. ..+.|...+++...... .+..... ....+++
T Consensus 458 ~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~glav 529 (619)
T 3s94_A 458 PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFTL 529 (619)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEEE
T ss_pred CEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEEE
Confidence 5777777764332222233345678999998776666554 45678889987644222 1111111 1234555
Q ss_pred ecCCCEEEEE--eCCeEEEEEcCCc
Q 001396 939 HKDQTRFLLV--HETHLAIYEAEEL 961 (1086)
Q Consensus 939 s~dg~~l~~~--~d~~i~vwd~~~~ 961 (1086)
..+ +|..+ ..+.|...+..+|
T Consensus 530 ~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 530 LGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp ETT--EEEEECTTSSCEEEEESSSC
T ss_pred ECC--EEEEeecCCCeEEEEEcCCC
Confidence 433 44443 3455666666655
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=3.9e-06 Score=88.06 Aligned_cols=223 Identities=12% Similarity=0.047 Sum_probs=144.2
Q ss_pred ccEEEEEECCCCCEEEEE-eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 391 VSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
..+..++|++++..|..+ ..++.|.+++..++.... ...........+++++++.. ++++....+.|.+++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999977666655 456799999998754221 12222346789999998764 4555566789999997644
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
...............+++.+ ++..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~--~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEET--TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEee--CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 32222222224567888854 3334444443 468888887654433333333446789999999888877653
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
+.+.|..+|...........+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~ 259 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIA 259 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEE
T ss_pred CCCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeec
Confidence 2568999998765544333322 234566654 45666655 56899999999999988886432 1235788888
Q ss_pred cCCC
Q 001396 626 KNGT 629 (1086)
Q Consensus 626 ~~~~ 629 (1086)
|++.
T Consensus 260 ~~~~ 263 (267)
T 1npe_A 260 LSQC 263 (267)
T ss_dssp CSCC
T ss_pred CccC
Confidence 8764
No 249
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.90 E-value=0.00072 Score=84.92 Aligned_cols=552 Identities=8% Similarity=-0.008 Sum_probs=283.9
Q ss_pred ccEEEEEEC---CCCCEEEEEeCCCEEEEEEecCCCccccceEecccc---ccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 391 VSVNRVVWS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---GNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 391 ~~V~~l~~s---pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~---~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
..++.+... ....||+.+..+.+ .|+.+... .+... ...+-. ..+.+-.+ .++ .++=.. ...|++.
T Consensus 426 ~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l-~~~---~ivQVt-~~~Irli 497 (1158)
T 3ei3_A 426 KGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNV-AHQ---QLIQIT-SASVRLV 497 (1158)
T ss_dssp CEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEE-TTT---EEEEEE-SSCEEEE
T ss_pred cEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEc-CCC---eEEEEe-cCEEEEE
Confidence 455555543 24578887777765 66666432 12211 111111 11222211 222 233333 3457777
Q ss_pred eCCCCceeEEeecCC-cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecC------CC
Q 001396 465 DAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN------GR 536 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d------~~ 536 (1086)
+...+..+..+.... ..|...+.+ +..++.++ .+.+.++.++.+.... ....-...|.|+++.+. ++
T Consensus 498 ~~~~~~~~~~w~~p~~~~I~~As~n----~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~ 572 (1158)
T 3ei3_A 498 SQEPKALVSEWKEPQAKNISVASCN----SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP 572 (1158)
T ss_dssp ESSSCCEEEEECCTTCCCCCEEEEC----SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCS
T ss_pred ECCCCeEEEEEECCCCCEEEEEEeC----CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccccc
Confidence 766666666665433 356655542 23555554 6788888776543221 11223457999998763 36
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEe--cCCCEEEEEECCCcEEEEEc--CCCeeEEEEcC
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKDQILAAGDDHVIKIWDM--NKVQLLTTIDA 612 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~ 612 (1086)
+++.|.. .++.++++++.+.+.+....-.. .....++.+. ....++.+|-.||.+..+.+ .+|++...-..
T Consensus 573 ~~aVg~~---~d~tv~I~sL~~l~~~~~~~L~~--~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~ 647 (1158)
T 3ei3_A 573 LCAIGLW---TDISARILKLPSFELLHKEMLGG--EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 647 (1158)
T ss_dssp EEEEEET---TTTEEEEEETTTCCEEEEEECCS--SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEEC---CCCEEEEEECCCCCeEEEEECCC--CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeE
Confidence 7777763 25689999998766554433211 1233444333 23457888999999865554 45655433211
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCc
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 692 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~ 692 (1086)
.-+..++.-..+...|..-+.+..+....++.....-.+..+ .-..+..+ ..|+....|+|
T Consensus 648 ~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l--~~~~v~~~-----------------~~F~se~~~~g 708 (1158)
T 3ei3_A 648 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV--NLKEVNYM-----------------CPLNSDGYPDS 708 (1158)
T ss_dssp ECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB--SSSCCCEE-----------------EEECCSSSTTE
T ss_pred EcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc--ChHHhceE-----------------eccCcccCCCc
Confidence 111234555555555554444445555555554322111111 11111111 11222212333
Q ss_pred ccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCC------------
Q 001396 693 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN------------ 760 (1086)
Q Consensus 693 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~------------ 760 (1086)
-.+ ..++.+++..++.........+. -...++.++++|+.+.++.+..+... ++....
T Consensus 709 ~v~---~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~ 778 (1158)
T 3ei3_A 709 LAL---ANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVLSSRIEV--QDTSGGTTALRPSASTQA 778 (1158)
T ss_dssp EEE---ECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEE--ECSSSSEEESSCCHHHHC
T ss_pred EEE---EcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEEEEeccc--cccccccchhhhhhhhhh
Confidence 222 22345777765432211112221 23467899999998877666544211 111000
Q ss_pred -----------------ccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE---eecC-CCEEEEEe----
Q 001396 761 -----------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA---LSKN-DAYLFSAS---- 815 (1086)
Q Consensus 761 -----------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~---~s~d-g~~l~~~~---- 815 (1086)
....-+.......+++.|+.+...+....+.. ...+.+++ |..+ ..++++|.
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~~~~~lvVGTa~~~ 855 (1158)
T 3ei3_A 779 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKDPNTYFIVGTAMVY 855 (1158)
T ss_dssp SEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred hhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccCCCEEEEEEeeecC
Confidence 00000111234567888888887666666643 33444444 3333 47888774
Q ss_pred -------CCeEEEEEccCceEEEEEc-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEE
Q 001396 816 -------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 887 (1086)
Q Consensus 816 -------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~ 887 (1086)
.|.|.+|++..++...... ...+.+++++-- +|+++| |- ..+|++|++...+.+..-..+-..|..+.
T Consensus 856 ~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~ 931 (1158)
T 3ei3_A 856 PEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYNNIMALY 931 (1158)
T ss_dssp TTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECCCSCEEE
T ss_pred CCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccccEEEEE
Confidence 2569999987554332221 245778888755 454444 43 47899999986654331111222243333
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCc------
Q 001396 888 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL------ 961 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~------ 961 (1086)
....+.+++.|..-..|.+...+..+... ..+.. +... .+++++.|-.++.++++=.+|.+.++.....
T Consensus 932 l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~-D~~~---~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~ 1006 (1158)
T 3ei3_A 932 LKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIAR-DFNP---NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEE 1006 (1158)
T ss_dssp EEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEE-CCSC---BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTG
T ss_pred EeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEe-eccc---ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccc
Confidence 43457889998887778776655422111 11111 1111 3688999987776555556788888876541
Q ss_pred -cceeccccCC-ccCEEEEEE---eCC---------CCEEEEEECCCcEEEEEc
Q 001396 962 -TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 962 -~~~~~~~~~h-~~~v~~l~f---s~d---------g~~l~s~~~Dg~v~vWd~ 1001 (1086)
+.+...-.-| ...|+++.- .+. ...++.++.+|.|.+.--
T Consensus 1007 ~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1007 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp GGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 1111111112 556777652 222 234677888998877643
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=5.2e-06 Score=87.13 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=156.2
Q ss_pred CEEEEEeCCCEEEEEEecCCCcccc--ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
.+|..+.. +.|+.+++.+...... ...+......+..++|+++++. ++++....+.|.+++...+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 4789999887542110 0112222345789999998775 455666678999999876654333333334
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC-
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC-
Confidence 6778888543 334555556678999999876544333333334678999999777766654321 1357888887643
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCC
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NEN 638 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 638 (1086)
....+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. +..++++. ..+
T Consensus 157 ~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~ 229 (267)
T 1npe_A 157 NRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTN 229 (267)
T ss_dssp CCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTT
T ss_pred CcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCC
Confidence 333332111 24678999999887776655 5678999999765544444321 123456654 45555554 568
Q ss_pred cEEEEECCCCCeeeeccccc-cceeeeEEccC
Q 001396 639 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI 669 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~p~ 669 (1086)
.|..++..+++.+..+.... .....+++.|.
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999887776665332 23445555543
No 251
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=8.6e-10 Score=122.05 Aligned_cols=190 Identities=9% Similarity=0.056 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCcc
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 928 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 928 (1086)
++..+++++.||.|+.||..+|+.+.++.. +.+.+..+.++++.+++++.||.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456888999999999999999999988876 55666666778888888889999999999887643211111100000
Q ss_pred CCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 929 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 929 ~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
....++.++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.+
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 011112344 4444 6789999999999998765332 21 2456778889999999999999999999988
Q ss_pred eeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCCCcEEEEccCCCCCCCCCC
Q 001396 1008 CRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1064 (1086)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 1064 (1086)
.++....+.. .++.++ ....+++++.||.|+.||.......|...
T Consensus 154 W~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 7765222111 112220 01567788999999999998877778654
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=1.1e-06 Score=89.92 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=138.5
Q ss_pred CeeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 798 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555544 3789999999999998876322 233456665 4456666667899999999999999
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCe
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 952 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~ 952 (1086)
.++..-.. ....+++||+.|+.+..++.|.++|..+.+......+... +... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence 88863211 1244677888887777788999999988664442222211 1110 135678888 77554444 5689
Q ss_pred EEEEEcCCccceeccccCC------------ccCEEEEEEeCCCCE-EEEEECCCcEEEEEcCCCc
Q 001396 953 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRM-VFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~-l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
|.+.|..+++.+..+..+. ......++|+|+++. ++++.....+++-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999877654320 135689999999865 5555577889988887653
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.76 E-value=1.5e-05 Score=93.12 Aligned_cols=378 Identities=11% Similarity=0.004 Sum_probs=204.6
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeecCCc-ce----------EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE
Q 001396 451 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-PV----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 517 (1086)
Q Consensus 451 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~-~v----------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 517 (1086)
.++.++. ++.|.-+|. ++|+.+.++..... .+ ..+++ .+..++.++.|+.|..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3555666 789999999 89999877653321 00 11222 23478888999999999999999887
Q ss_pred EecCCCC----ceEE-EEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeeeeEEeccccc-------------------
Q 001396 518 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 571 (1086)
Q Consensus 518 ~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 571 (1086)
....... .+.+ ... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6654331 1211 111 244 444443211 12578999999999988776643200
Q ss_pred ---------------CC-ceEEEEEecCCCEEEEEECC----------------CcEEEEEcCCCeeEEEEcCCCCC---
Q 001396 572 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 616 (1086)
Q Consensus 572 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 616 (1086)
.. ....+++.++...++.++.+ +.|..+|..+|+.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235677777777776642 35999999999999887643211
Q ss_pred ----CCCceEEEecCCC---EEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCC
Q 001396 617 ----PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 689 (1086)
Q Consensus 617 ----~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s 689 (1086)
.....+....+|+ .++.++.+|.+.++|..+++.+.........-..-.+.+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 1111122234674 577888899999999999987766542210000000000
Q ss_pred CCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc
Q 001396 690 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 769 (1086)
Q Consensus 690 ~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 769 (1086)
..++.+....... .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 357 ~~g~p~~~~~~~~----------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~--------- 417 (571)
T 2ad6_A 357 KTGTPVRDPEFAT----------RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP--------- 417 (571)
T ss_dssp TTCSEEECGGGCC----------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred cCCceecccccCC----------CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence 0000000000000 000000001111000011134678898888888777644444332110
Q ss_pred cccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCC
Q 001396 770 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 849 (1086)
Q Consensus 770 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 849 (1086)
...+. . .-.....+..+|.+. ....+|.|..||..+++.+.++.... .+....+.. .
T Consensus 418 ---------~~~g~-~---------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~ 474 (571)
T 2ad6_A 418 ---------YRAGQ-F---------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K 474 (571)
T ss_dssp ---------CCTTS-C---------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred ---------cccCC-c---------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence 00011 0 000011122233321 00124789999999999888775322 222222333 3
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCCCEEEE
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 897 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~s 897 (1086)
+.++++++.||.|+.+|..+|+.+.++...... -.-+.+..+|+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 457777999999999999999999888743221 122445677765553
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=1.8e-06 Score=103.29 Aligned_cols=288 Identities=13% Similarity=0.095 Sum_probs=177.5
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccE-EEEEECCCCCEEEEEeCCCEEEEEEecC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 421 (1086)
+.+++.++.|.-+|..+|+.+-......- ... ..... ..+ ..+++ ++..|++++.|+.|..+|..+
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEVA-----KVK-----ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCeEEEEECCCChhceEECCCCC-----ccc-----cccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC
Confidence 56677789999999999998765332100 000 00000 000 11222 356788888999999999999
Q ss_pred CCccccceEeccc--cccEeE-EEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeecCC-cc----------
Q 001396 422 GSDARQQLEIDAH--VGNVND-LAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHG-AP---------- 481 (1086)
Q Consensus 422 ~~~~~~~~~~~~h--~~~v~~-v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~-~~---------- 481 (1086)
|+.+-... .... ...+.+ ... .++. ++.+.. ++.|..+|.++|+.+.++.... .+
T Consensus 137 G~~~W~~~-~~~~~~~~~~~~~P~v-~~~~---v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 137 GKAIWSQQ-TTDPAKPYSITGAPRV-VKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp CCEEEEEE-CSCTTSSCBCCSCCEE-ETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred CCEeeeec-cCCCCCcceecCCCEE-ECCE---EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 98654321 1111 011111 111 1343 333432 5899999999999998775311 00
Q ss_pred --------------------eEEEeecccCCccEEEEEEcCC-------------------eEEEEEcCCCceeEEecCC
Q 001396 482 --------------------VYSLCPHAKENIHFIFSISVDG-------------------KIKAWLYDSLGARVDYDAP 522 (1086)
Q Consensus 482 --------------------v~~~~~~~~~~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~~ 522 (1086)
...+++ +++..+++.++.++ .|..+|.++++.+..+...
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred cccccCCccceeeeCCCCccccceEE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 012334 33445777877766 3999999999988877543
Q ss_pred C---------CceEEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc---------cCCc-------
Q 001396 523 G---------LGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNS------- 574 (1086)
Q Consensus 523 ~---------~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~------- 574 (1086)
. .+.....+..+|+ .++.+.. ++.++++|..+|+.+........ ...+
T Consensus 290 ~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~ 365 (668)
T 1kv9_A 290 PGDSWDFTATQQITLAELNIDGKPRKVLMQAPK----NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVR 365 (668)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTT
T ss_pred CCccccccCCCCcEEEEeccCCcEEEEEEEECC----CCEEEEEECCCCCEeccccccccccccccccccCCcccccccc
Confidence 2 2222233344675 4555543 77899999999998744332110 0000
Q ss_pred -----------------eEEEEEecCCCEEEEEE------------------------------------CCCcEEEEEc
Q 001396 575 -----------------VSVVHFDTAKDQILAAG------------------------------------DDHVIKIWDM 601 (1086)
Q Consensus 575 -----------------v~~~~~~~~~~~l~~~s------------------------------------~dg~i~iwd~ 601 (1086)
-..++++|+...++... .+|.|+.||+
T Consensus 366 ~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~ 445 (668)
T 1kv9_A 366 YEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP 445 (668)
T ss_dssp CSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET
T ss_pred ccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC
Confidence 11267888777766521 2378999999
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccc
Q 001396 602 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 602 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
.+++.+........ .....+...+.++++++.|+.++.||..+++.+..+...
T Consensus 446 ~tG~~~W~~~~~~~---~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 446 VKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCcEEEEccCCCC---CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 99999887765432 334455567889999999999999999999988777643
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.74 E-value=8.5e-06 Score=94.86 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=121.5
Q ss_pred CCeEEEEEccCceEEEEEcCCCCC-------------------------------------e-EEEEEcCCCCCEEEEEe
Q 001396 816 GGVISLYIVMTFKTILTIMPPSPT-------------------------------------A-TSLAFNPHDNNVIAIGM 857 (1086)
Q Consensus 816 dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------i-~~l~~s~~d~~~lasg~ 857 (1086)
+|.|+.+|..+|+.+..+...... + ..+++.+ ...++..+.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 567888888888888776532211 0 1356667 555777776
Q ss_pred CC----------------CeEEEEEcCCceeEEEecc--cc--------CCeEEEEEe-CCC---CEEEEEeCCCcEEEE
Q 001396 858 DD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL---NILVSSGGDAQIFVW 907 (1086)
Q Consensus 858 ~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~v~~l~~s-pdg---~~l~s~s~dg~i~iw 907 (1086)
.+ +.|.-+|..+|+.+..++. |. .++. +... .+| +.++.++.+|.+.+.
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 55 3899999999999877664 21 1121 2222 567 567778999999999
Q ss_pred ECCCCceeeeeeeec----------cCCCcc----------C-----------CCCceEEEEecCCCEEEEE--------
Q 001396 908 DVDGWGIQTCRSLQT----------PDGVMT----------L-----------APSETHIQFHKDQTRFLLV-------- 948 (1086)
Q Consensus 908 d~~~~~~~~~~~~~~----------~~~~~~----------~-----------~~~v~~~~~s~dg~~l~~~-------- 948 (1086)
|..+++..-...+.. ..+... . ...-..++|+|+..++.+.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999987543222110 000000 0 0011357788887776541
Q ss_pred --------------------------------eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcE
Q 001396 949 --------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 996 (1086)
Q Consensus 949 --------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v 996 (1086)
..+.|..||+.+|+.+-+...+ .++..-.+...|.+++.++.||.+
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYL 496 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEE
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeE
Confidence 1256888888888876543222 122211233456778889999999
Q ss_pred EEEEcCCCceeeeecc
Q 001396 997 SIHEASNLEVQCRILS 1012 (1086)
Q Consensus 997 ~vWd~~~~~~~~~~~~ 1012 (1086)
+.||..+|+.+.++..
T Consensus 497 ~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 497 KARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCCCEEEEeeC
Confidence 9999999999988873
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.73 E-value=3.7e-05 Score=89.84 Aligned_cols=378 Identities=11% Similarity=0.070 Sum_probs=202.8
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeecCCcce---------EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC
Q 001396 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 522 (1086)
Q Consensus 452 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 522 (1086)
++.++.++.|.-+|.++|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445554459999999999988775433211 11222 2347888899999999999999988766543
Q ss_pred CC----ceE-EEEEec---CCC-EEEEEeeCC--CCceeEEEEeCCCCeeeeEEeccccc--------------------
Q 001396 523 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 571 (1086)
Q Consensus 523 ~~----~i~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 571 (1086)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 111 111222 233 455543211 12678999999999887665431100
Q ss_pred ------------------CCceEEEEEecCCCEEEEEEC--------------------C----CcEEEEEcCCCeeEEE
Q 001396 572 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 572 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 609 (1086)
...-...++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123567777788887663 2 5899999999999988
Q ss_pred EcCCCCC----CCCce-EEEe---cCCC---EEEEEECCCcEEEEECCCCCeeeecccccc--ceeeeEEccCCCceecc
Q 001396 610 IDAGGGL----PENPR-ICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 610 ~~~~~~~----~~v~~-v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~ 676 (1086)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++.+........ ....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~--------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK--------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence 7643211 01111 2222 4674 788899999999999999988776543221 01111000
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
.+.........|.. +. . .+ +.....+..|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 00 0000001111100111112467788777777666553333332
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCC
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 836 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~ 836 (1086)
.+.. ...| ....-..+...|++. ..+|.|..||+.+++.+.+....
T Consensus 440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred cccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence 1100 0011 111111122223310 12578999999999988776533
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCe-EEEEEeCCCCEEE
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 896 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~~l~ 896 (1086)
. ++..-.... .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+
T Consensus 486 ~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 486 L-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp S-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred C-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 2 221111122 34577789999999999999999998887543322 1266667886444
No 257
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=2.2e-06 Score=87.51 Aligned_cols=217 Identities=9% Similarity=0.002 Sum_probs=144.3
Q ss_pred ceEEEEEcCCCC--CeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeEEEecccc-CCeEEEEEeCCCCEEEEEeCC
Q 001396 827 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD 901 (1086)
Q Consensus 827 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s~s~d 901 (1086)
.+.+.++. |.. ....++|++ ++.++++.+. ++.|.++|+.+++.+..+.-.. .....+++.. ++..++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 44556664 443 468999999 6755555443 5799999999999988865211 1223455552 2444455568
Q ss_pred CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCC----ccCEE
Q 001396 902 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPIS 976 (1086)
Q Consensus 902 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v~ 976 (1086)
+.+.++|..+.+... .+... .. ....+++||+.|.++ .++.|.++|..+.+.+..+..+. -..+.
T Consensus 86 ~~v~viD~~t~~v~~--~i~~g-~~-------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIK--NFTHQ-MK-------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEE--EEECC-SS-------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEE--EEECC-CC-------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 899999999865433 22221 01 124577888877774 46789999999988777655432 12467
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCC---CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 977 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 977 ~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
.+.|. ||+..+....++.|.+-|..+++.+.++......+. ........+..++|+|+...+++++...+.|.+-+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 786666655678999999999999999874321110 00111234578999995445777777889999999
Q ss_pred cCCC
Q 001396 1054 PNEP 1057 (1086)
Q Consensus 1054 ~~~~ 1057 (1086)
+.+.
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8654
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=3.6e-05 Score=89.59 Aligned_cols=382 Identities=10% Similarity=0.032 Sum_probs=202.4
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeecCCcc-----------eEEEeecccCC--ccEEEEEEcCCeEEEEEcCCCce
Q 001396 451 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA 515 (1086)
Q Consensus 451 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~~-----------v~~~~~~~~~~--~~~l~s~s~dg~i~vwd~~~~~~ 515 (1086)
.++.++. ++.|.-+|. ++|+.+.++...... ...+++.+..+ ..+++.++.|+.|..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4566666 888999999 899998777543211 11223311111 12388889999999999999998
Q ss_pred eEEecCCCC----ceEE-EEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeeeeEEecccccC----------------
Q 001396 516 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 572 (1086)
Q Consensus 516 ~~~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 572 (1086)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876654331 1211 111 244 444443211 125789999999999887766432000
Q ss_pred ------------------Cce-EEEEEecCCCEEEEEECC----------------CcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 573 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 573 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
..+ ...++.++...++.+..+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134667778888887765 379999999999998876543210
Q ss_pred ----CCce-EEEe---cCC---CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 618 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 618 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
.... +.+. .+| ..++.++.+|.+.++|..+++.+.........-..-.+. ...+......
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 467778899999999999998876554211000000000 0000000000
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
...+ .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000000111111111112235688999888877766533322211100
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEc
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 846 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 846 (1086)
...+.. .-..-..+..+|.+.-......|.+..||+.+++.+.+..... +...-.+.
T Consensus 425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~ 481 (599)
T 1w6s_A 425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMA 481 (599)
T ss_dssp ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEE
T ss_pred ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceE
Confidence 000100 0000000111221100000024778999999999887765221 11111122
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCe-EEEEEeCCCCEE
Q 001396 847 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL 895 (1086)
Q Consensus 847 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~~l 895 (1086)
. .+.+++.|+.||.++.||..+|+.+.+++-..+.+ .-+.+..||+..
T Consensus 482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 2 34577779999999999999999998886433222 225556677643
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.65 E-value=1.7e-05 Score=92.50 Aligned_cols=236 Identities=11% Similarity=0.068 Sum_probs=142.5
Q ss_pred CCEEEEEeC-CCEEEEEEe-cCCCccccceEeccccc--------cE-eEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 402 GSLLGVAYS-KHIVQLYAY-HGGSDARQQLEIDAHVG--------NV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 402 g~~las~~~-d~~i~iwd~-~~~~~~~~~~~~~~h~~--------~v-~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
+..+.+++. ++.|.-+|. .+|+.+-... +..... .+ ..++. ++. .++.++.|+.+..+|.++|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~--~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAY--GAG--QIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEE--ECC--EEEEEeCCCEEEEEECCCCC
Confidence 445555555 677888888 7776543211 111000 00 11233 234 57777889999999999999
Q ss_pred eeEEeecCCc----ceEE-EeecccCCccEEEEEEc------CCeEEEEEcCCCceeEEecCCCCc--------------
Q 001396 471 RTYSFEGHGA----PVYS-LCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLG-------------- 525 (1086)
Q Consensus 471 ~~~~~~~h~~----~v~~-~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~-------------- 525 (1086)
.+.+...... .+.+ ..+ . ++ .++.++. ++.|..+|..+++.+..+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--A-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--E-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEEecCCCCCccceeccCCEE--E-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 9877653221 1211 111 1 33 5555554 799999999999988766543211
Q ss_pred ------------------------eEEEEEecCCCEEEEEeeCCC--------Cc----eeEEEEeCCCCeeeeEEeccc
Q 001396 526 ------------------------CTRMAYSANGRRLFSCGTSKE--------GE----SFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 526 ------------------------i~~~~~s~d~~~l~~~~~~~~--------~~----~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
...+++.++...++.+..+.. ++ +.|..+|..+|+.+-.++...
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 023567777777776653210 11 369999999999988776432
Q ss_pred c------cCCceEEEEEecCCC---EEEEEECCCcEEEEEcCCCeeEEEEcCCCCC-----------C------------
Q 001396 570 L------QHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-----------P------------ 617 (1086)
Q Consensus 570 ~------~~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~------------ 617 (1086)
. .......+....+|+ .++.++.+|.++++|..+|+.+......... .
T Consensus 293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCC
Confidence 0 001112223334674 5677889999999999999998776543210 0
Q ss_pred --------------CCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 618 --------------ENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 618 --------------~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.-..++++|+..++++...+....++...
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 415 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccc
Confidence 01347889998899888877655555443
No 260
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.61 E-value=0.0037 Score=76.37 Aligned_cols=570 Identities=12% Similarity=0.076 Sum_probs=300.9
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
...|.++.-..+|.. -.|+.+| +..||-.+ ... +... .......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~---~~~-----~~~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI--WIGSNKG-LFSYDGYS---TQQ-----HFTY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCE--EEEESSC-EEEECSSC---EEE-----CSCT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCE--EEEECCC-ccccCCCc---eEE-----EEcc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 347999999999963 3455555 56676322 111 0000 01123568888877766 5566
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee-----cCCcce
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 482 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v 482 (1086)
|+.+| +..||..+++... . .......|.++.. .+|. |..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~-~--~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ-P--ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC-C--SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC-c--ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 7899987753221 1 1112335777654 3554 4445544 6888998776543 231 113456
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-cC----CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
.++.. +.++. |..++.+ -|..++..+....... .. ....|.++....++..|..++. +-+..+|..
T Consensus 149 ~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEE--cCCCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 66655 33444 4445554 4667776654432211 11 1224788888887776555542 238889987
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 632 (1086)
+++........ ...|.++....++... .|+. +-+.+++..+++......... ....|.++....+|. |-
T Consensus 220 ~~~~~~~~~l~---~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQTEAFH---NNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEEEEEE---EEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEeccCCC---CCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 76543322111 2468888887777554 4554 458888887765433221110 112356666666665 44
Q ss_pred EEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeec
Q 001396 633 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 712 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~ 712 (1086)
+|+..| +.++.... ...... ..+
T Consensus 294 iGT~~G-l~~~~~~~--~~~~~~----------~~~-------------------------------------------- 316 (758)
T 3ott_A 294 LGTDYG-ISLSRYNS--ALQFIP----------ISQ-------------------------------------------- 316 (758)
T ss_dssp EEESSS-EEEECCCC---CEEEE----------HHH--------------------------------------------
T ss_pred EEeCCc-ccccccCC--ceeEEe----------ccc--------------------------------------------
Confidence 455555 44332111 110000 000
Q ss_pred CCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCC
Q 001396 713 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 792 (1086)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 792 (1086)
.........|.++....+|...+.+ .+|.. .++-..... .....+...... ..+
T Consensus 317 ---------~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~-~~~~~~~~~---------~~~~~~~~~~~~----~~l-- 370 (758)
T 3ott_A 317 ---------ITGTGDGNQFYSLFRDSKGFYWFGG-ANGLI-RFTDPAGER---------HDAIWYRMGDKT----YPL-- 370 (758)
T ss_dssp ---------HSCSCCCCBEEEEEECTTCCEEEEE-TTEEE-EESCTTSSC---------CCCEEECTTCSS----SCC--
T ss_pred ---------CCCCCCCceEEEEEEcCCCCEEEee-CCcce-eeccccccc---------ceeEEeccCCcC----CCC--
Confidence 0000012356777777777755554 45533 333221100 001111110000 001
Q ss_pred CCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEE--cC----CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001396 793 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 866 (1086)
....|.++...++|.+.+.. ++-+..||..+++..... .. ....|.++...+ ++++ -.|+..+-+.++|
T Consensus 371 --~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~ 445 (758)
T 3ott_A 371 --SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVD 445 (758)
T ss_dssp --SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEE
T ss_pred --CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEc
Confidence 23568889888888876654 667999999887654322 11 224588888876 5654 4477666688888
Q ss_pred cCCc-----eeE---EEec---c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCce
Q 001396 867 ARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 867 ~~~~-----~~~---~~l~---~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
..+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++... +.. .... ....+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~~-~~~~~~ 520 (758)
T 3ott_A 446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DELT-GEKSPN 520 (758)
T ss_dssp HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTSC-GGGCEE
T ss_pred cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCcC-CCcccc
Confidence 6531 111 1111 1 12358899999999888744444458889987754322 111 1110 012477
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCccceeccccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccc
Q 001396 935 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1013 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~ 1013 (1086)
++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|. |..++..| +..+|..+.+... +.
T Consensus 521 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~-- 593 (758)
T 3ott_A 521 YLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN-- 593 (758)
T ss_dssp EEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C---
T ss_pred eEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec--
Confidence 888888998887654 56888887765432210111 13567888764 665 44455666 7778888765542 11
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1014 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
++.. .+. .++.-.+ + ..|..|+.+|-+.+ +.
T Consensus 594 --~~~~----~~~-~~~~~~~-~-G~l~fG~~~Gl~~f-~p 624 (758)
T 3ott_A 594 --MTNK----RFT-SLLFDPK-E-DCVYLGGADGFGIS-HS 624 (758)
T ss_dssp ---CCC----CCS-EEEEETT-T-TEEEEECBSEEEEE-EC
T ss_pred --CCCC----cee-eeEEECC-C-CcEEEecCCceEEE-Ch
Confidence 1111 111 2222233 3 56777888875544 44
No 261
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.58 E-value=6.8e-06 Score=99.99 Aligned_cols=250 Identities=9% Similarity=-0.009 Sum_probs=134.4
Q ss_pred CceEeeec-CCCceEEEEEeccC----cEEEEecCCC-ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 330 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 330 ~V~~~~~s-pdg~~lla~gs~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 57889999 99997555544443 4999999998 63321 0 10 1234688999999
Q ss_pred EEEEEeCC-----CEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEe-CCCcEEEEeCCCCc-ee--E
Q 001396 404 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 473 (1086)
Q Consensus 404 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~-~d~~i~iwd~~~~~-~~--~ 473 (1086)
.|+....+ ..|+++++.++...... .+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 36888888776432111 222 223346688999999964333322 23468889988763 22 3
Q ss_pred Ee-ecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEE-ecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 474 SF-EGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 474 ~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+ ........++.|+ .++.+++....+ ..|..+++.+...... +..+...+.--.++++++.|+.... .++
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~-~~g 389 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR-RAG 389 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE-ETT
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE-eCC
Confidence 33 3334445555432 233344444433 2566667654222111 2222222222234445666665543 234
Q ss_pred ceeEEEEeC-------CCCeeeeEEecccccCCceEEEEE----ecCCCEE-EEEECC---CcEEEEEcCCCee
Q 001396 548 ESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 606 (1086)
Q Consensus 548 ~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~ 606 (1086)
...|+++|+ .+++..+.+.... ...+..+.+ ++++..+ ++.+.. +.++.+|+.+++.
T Consensus 390 ~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 390 LTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp EEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred EEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 667888886 4443133332211 112223322 3455544 333322 4577778877654
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.57 E-value=5.2e-06 Score=83.44 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=130.2
Q ss_pred EeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcce-EEEeecccCCccEEEEEEcCCeEEEEEcCCCc
Q 001396 438 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 514 (1086)
Q Consensus 438 v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 514 (1086)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... ..+++ . ++.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~-g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--W-KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--e-CCEEEEEEeeCCEEEEEECccCc
Confidence 4778898 554 667777666 89999999999998886443221 22443 2 22444555568999999999999
Q ss_pred eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc--cCCceEEEEEecCCCEEEEEE-
Q 001396 515 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG- 591 (1086)
Q Consensus 515 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s- 591 (1086)
.+..+..... ...+++|++.|+.... ...|.++|..+.+.+..+..... ....++.+.|. +|. +++..
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~SdG----s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w 189 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSDG----TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVW 189 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECCS----SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEECCCC---ceEEecCCCEEEEECC----CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEc
Confidence 8888776442 2344577887777642 56799999999998888765320 11345567776 664 55544
Q ss_pred CCCcEEEEEcCCCeeEEEEcCCCC----------CCCCceEEEecCCCEEEEEECC
Q 001396 592 DDHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 592 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
.++.|.+.|..+++.+..+...+- ....+.+|++|+++.|++.+..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 688999999999999998876421 1234789999998888887753
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.56 E-value=5.5e-05 Score=88.32 Aligned_cols=205 Identities=12% Similarity=-0.002 Sum_probs=122.3
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEecccccc-------EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
..+++++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|..+|.++|+.+...
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 344455553448888888887644221 1110000 011222 234 4677788999999999999998776
Q ss_pred ecCCc----ceE-EEeeccc-CCcc-EEEEEEc------CCeEEEEEcCCCceeEEecCCCCc-----------------
Q 001396 476 EGHGA----PVY-SLCPHAK-ENIH-FIFSISV------DGKIKAWLYDSLGARVDYDAPGLG----------------- 525 (1086)
Q Consensus 476 ~~h~~----~v~-~~~~~~~-~~~~-~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~----------------- 525 (1086)
..... .+. +-.+... .+++ .+++++. +|.|..+|..+++.+.........
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 54321 111 1111111 1232 5656543 789999999998887755332100
Q ss_pred ------------------------eEEEEEecCCCEEEEEeeCC----------CC----------ceeEEEEeCCCCee
Q 001396 526 ------------------------CTRMAYSANGRRLFSCGTSK----------EG----------ESFLVEWNESEGAI 561 (1086)
Q Consensus 526 ------------------------i~~~~~s~d~~~l~~~~~~~----------~~----------~~~i~iwd~~~~~~ 561 (1086)
-..++++|+...++.+..+. .+ .+.|..+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 02356777778887766421 11 26899999999999
Q ss_pred eeEEecccc-------cCCceEEEEEe-cCCC---EEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 562 KRTYQGLQL-------QHNSVSVVHFD-TAKD---QILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 562 ~~~~~~~~~-------~~~~v~~~~~~-~~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
+-.++.... ...++ -+... .+|+ .++.++.+|.++++|..+|+.+......
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 888764220 00112 12222 4664 6778999999999999999998776543
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.52 E-value=1.6e-05 Score=79.91 Aligned_cols=186 Identities=11% Similarity=0.115 Sum_probs=127.5
Q ss_pred ccEEEEEECCCCCEEEEEeCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
.-...+.|+ ++.+..+.+.+| .|+++|+++++.++.. .+. .........++++. +.+..-.++.+.++|.++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-~l~---~~~FgeGit~~g~~-ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI-ELG---KRYFGEGISDWKDK-IVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE-ECC---TTCCEEEEEEETTE-EEEEESSSSEEEEEETTT
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE-ecC---CccceeEEEEeCCE-EEEEEeeCCEEEEEECcc
Confidence 445789998 777777777765 8999999999876643 222 23333333445665 344455688999999999
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--C---CceEEEEEecCCCEEEEEee
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--G---LGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~---~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+... + ..++.+.+. +|+..+..-.
T Consensus 117 ~~~~~ti~~~~eG-~glt~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 117 LRQVRSFNYDGEG-WGLTH----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp CCEEEEEECSSCC-CCEEE----CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CcEEEEEECCCCc-eEEec----CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 9999998753322 33432 4556666666889999999998877765542 2 234457776 6754443322
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccc---------cCCceEEEEEecCCCEEEEEEC
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
...|.+.|..+|+.+..+..... .....+.++|+|+++.|+..+.
T Consensus 191 ----~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 ----TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ----SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ----CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 45799999999999988875311 1235689999999998888775
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=2e-05 Score=79.06 Aligned_cols=186 Identities=9% Similarity=0.065 Sum_probs=129.0
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
..-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.++|.++.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTT
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcC
Confidence 3445788887 4667777788889999999999987754 332 2333223345565 3444557899999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC--C---ceEEEEEecCCCEEEEEeeC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~---~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+.+.++..... -..++. ++..|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+..+....
T Consensus 127 ~~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~- 199 (268)
T 3nok_A 127 QRERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH- 199 (268)
T ss_dssp EEEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-
T ss_pred cEEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC-
Confidence 99999875332 234443 45677777779999999999988777655422 1 34567776 7754433322
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccc----------ccCCceEEEEEecCCCEEEEEEC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
...|.+.|..+|+.+..+.... ....-.+.++++|+++.|+..+.
T Consensus 200 ---s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 200 ---SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ---CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ---CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 4579999999999988887531 01246789999999888777664
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.50 E-value=5.4e-05 Score=81.82 Aligned_cols=263 Identities=10% Similarity=0.007 Sum_probs=149.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeecccccee--ee-e---eeecCCCccEEEEE
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML--FK-T---ALVRDPGVSVNRVV 397 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~l~ 397 (1086)
+.+.-....+++|+++|+ ++.++..++.|..||..+++... |........ .. . .........+..++
T Consensus 14 ~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDIS 86 (322)
T ss_dssp EECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE
T ss_pred cCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEE
Confidence 344334678899999997 46778888999999987765321 100000000 00 0 00000113578899
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCccccce-Eecc-ccccEeEEEecC-CCCcEEEEEEeC----------------
Q 001396 398 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD---------------- 457 (1086)
Q Consensus 398 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~v~~s~-d~~~l~l~s~~~---------------- 457 (1086)
+.+ +|+ |.++...+.|..+|..+++. +... ...+ .......+++.+ +|+ +.++...
T Consensus 87 ~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 87 YNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTC
T ss_pred EcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccC
Confidence 998 565 55554445588888776532 2111 1111 123478899999 887 5554322
Q ss_pred -CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE-EcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEec
Q 001396 458 -DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 458 -d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~ 533 (1086)
++.|..||..+++....... -.....+++ ++++..|+.+ +..+.|.+|++.... ....+....+ ...+++++
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~--~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~ 238 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEV--SADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 238 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEE--CTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEE--CCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence 36789999877764332221 223455777 4466655544 667899999987521 1111111223 77899999
Q ss_pred CCCEEEEEeeCC------CCceeEEEEeCCCCeeeeEEeccccc-CCceEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001396 534 NGRRLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 534 d~~~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
+|++.++..... ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++...++.|.++++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 998766654310 013568888874 7777777654211 134666666 3454444445677888888754
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=2.2e-05 Score=84.87 Aligned_cols=245 Identities=10% Similarity=0.006 Sum_probs=147.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEec-----------------cccccEeEEEecC-CC
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PC 447 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~v~~s~-d~ 447 (1086)
+.+.-....+++|.++|+++.++..++.|..|+..+++. ....... .....+..+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 333334566789999999888888899999999876542 2110000 1123578899998 56
Q ss_pred CcEEEEEEeCCCcEEEEeCCCCceeEEeecC-----CcceEEEeecccC-CccEEEEEEc-----------------CCe
Q 001396 448 KQISVITCGDDKTIKVWDAVTGSRTYSFEGH-----GAPVYSLCPHAKE-NIHFIFSISV-----------------DGK 504 (1086)
Q Consensus 448 ~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~-~~~~l~s~s~-----------------dg~ 504 (1086)
+ |+.+...+.|..+|..++.. ..+... ......+++ ++ +|.+.++... ++.
T Consensus 93 ~---l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 93 Q---LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp E---EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred c---EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCce
Confidence 5 44444445588899776543 222111 123566777 44 5555555432 367
Q ss_pred EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEec
Q 001396 505 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|..||..++....... .......++++++|+.|+.+.. ..+.|+.+++.... ....+.... + ...+++.+
T Consensus 167 v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~ 238 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNA 238 (322)
T ss_dssp EEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECT
T ss_pred EEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECC
Confidence 8888876554332211 1123456899999997766542 14579999987531 112222222 3 77899999
Q ss_pred CCCEEEEEEC----------CCcEEEEEcCCCeeEEEEcCCCC--CCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 583 AKDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 583 ~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
+|+..++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++....+.|..+++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 9986666544 467888887 4777777765432 234566666 4565555555678888888763
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=6.5e-05 Score=80.39 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=140.1
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CC-cEEEEeCCC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT 468 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~-~i~iwd~~~ 468 (1086)
.....++|+++|+++++-..++.|..||..++. .. . + .....+..+++.++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 456789999999977776678899999987532 11 1 1 2234688999999998 4554433 32 477778788
Q ss_pred CceeEEeec-CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-e-------c--CCCCceEEEEEecCCCE
Q 001396 469 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 537 (1086)
Q Consensus 469 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~d~~~ 537 (1086)
|+....... .......++. ..++..+++...++.|.++|......... . . ........+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875433221 1122334443 22344455544688888888765422111 0 0 111234455 889988
Q ss_pred EEEEeeCCCCceeEEEEeCCC-Cee--eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
|+.+.. ..+.|+.+++.. ++. ...+.. . .....++++++|+..++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~-~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE-Q---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE-S---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec-c---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 256799999874 332 122211 1 245678899999877776678899999975 55533222222
Q ss_pred CCCCCceEEEe---cCCCEEEEEECCC
Q 001396 615 GLPENPRICFN---KNGTLLAVIANEN 638 (1086)
Q Consensus 615 ~~~~v~~v~~s---~~~~~l~~~~~dg 638 (1086)
......+++|. |+++.|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 23346889998 8888888776643
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.46 E-value=7.7e-06 Score=98.08 Aligned_cols=277 Identities=10% Similarity=0.035 Sum_probs=156.4
Q ss_pred EeeecC-CCceEEEEEeccC-----------cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 333 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 333 ~~~~sp-dg~~lla~gs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
++++.| +|+ +++.|+.+. .+.+||..+++-..... ....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 786 677776532 57888888876432100 1122333445678889
Q ss_pred CCCEEEEEeC-CCEEEEEEecCCCccccceEeccccccE-eEEEecCCCCcEEEEEEe-CC-----CcEEEEeCCCCcee
Q 001396 401 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 472 (1086)
Q Consensus 401 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~v~~s~d~~~l~l~s~~-~d-----~~i~iwd~~~~~~~ 472 (1086)
+|+++++|+. +..+.+||..+++-... ..+ +..+. .+++..++|+ +++.|+ .+ ..+.+||..+++..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 45899999987643221 111 11221 3455667888 777777 34 57999999887643
Q ss_pred EEeecC-Ccce----EEEeecccCCccEEEEEEcCC---------eEEEEEcCCCceeEEecCC---------CCceEEE
Q 001396 473 YSFEGH-GAPV----YSLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRM 529 (1086)
Q Consensus 473 ~~~~~h-~~~v----~~~~~~~~~~~~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~---------~~~i~~~ 529 (1086)
.. ... ..+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++
T Consensus 328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 32 100 0000 00011 12344555555544 4677887765533221111 1122444
Q ss_pred EEec-CCCEEEEEeeCCC----Cce---eEEEEeCCCCeeeeEE--ecccccCCceEEEEEecCCCEEEEEECC------
Q 001396 530 AYSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------ 593 (1086)
Q Consensus 530 ~~s~-d~~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------ 593 (1086)
.|.. +++.++.|+.... ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcC
Confidence 5544 6777777764221 011 6888998877654433 1111 1223455667899999888754
Q ss_pred -----CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 594 -----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 594 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432222221122234556789999999885
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=5.7e-05 Score=75.31 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=127.1
Q ss_pred CCccEEEEEECCCCCEEEEEeCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
...-...+.|++ +.+..+.+.+ ..|+++|+.+++.++.. .+.. .........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT---TCCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899986 5666666654 48999999999876643 2222 2222333334555 3444567899999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-----CceEEEEEecCCCEEEEE
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~d~~~l~~~ 541 (1086)
++.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+..+..
T Consensus 93 ~tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 999999998754322 34443 44566666678999999999988777655432 234556654 66644443
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEeccc----------ccCCceEEEEEecCCCEEEEEEC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
-. ...|.+.|..+|+.+..+.... ....-.+.++++|+++.|+..+.
T Consensus 167 w~----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WL----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CC----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 22 4479999999999998887431 11245789999999888888774
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.43 E-value=6.6e-06 Score=82.61 Aligned_cols=183 Identities=8% Similarity=0.066 Sum_probs=123.2
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCe--EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001396 798 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 874 (1086)
-...+.|+. +.+.++.+ +|.|+++|+++++.+..+ - .... ..+++. ++++.+....++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 346788874 44444444 588999999999988877 2 2233 345554 45666667778999999999999999
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeE
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 953 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i 953 (1086)
++..- ..- ..+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..+.. .++.|
T Consensus 131 ti~~~-~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v--~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 131 TTRYS-GEG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPV--ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEECS-SCC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEeCC-Cce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCccc--ccccccEEe-CCEEEEEECCCCeE
Confidence 88742 222 3344678888877778899999999876544322222 11110 134567776 77655554 56789
Q ss_pred EEEEcCCccceeccccC------------CccCEEEEEEeCCCCEEEEEEC
Q 001396 954 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
.+.|.++|+.+..+..+ -..-...++++|+++.|++.+.
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999987664321 1246688999998766665543
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=7.3e-05 Score=80.01 Aligned_cols=229 Identities=11% Similarity=0.079 Sum_probs=138.2
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC-C-eEEEEEcCCceeE
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 873 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-~v~iwd~~~~~~~ 873 (1086)
.....++++++|+++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998666654 688999998754 333332 335688999999 78776655433 2 4777787777654
Q ss_pred EEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeee-----ccCCCccCCCCceEEEEecCCCEEEE
Q 001396 874 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ-----TPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 874 ~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
.... ........++..+++..+++-..++.|.++|..++......... ...+.. .....+ ++|++.|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 3222 12223455666666655665556888888887654211100000 000110 123444 899987776
Q ss_pred E--eCCeEEEEEcCC-ccc--eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceee--eeccccccCCCC
Q 001396 948 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC--RILSTAYLRPTT 1020 (1086)
Q Consensus 948 ~--~d~~i~vwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~--~~~~~~~~~~~~ 1020 (1086)
+ ..+.|.+|++.. +.. ...+.. ......++++++|.++++....+.|.+++.. |+... .+. .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~----~~--- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE----QG--- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG----GT---
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc----cc---
Confidence 4 467899999874 332 111111 1345668999999887777777899999975 65532 221 11
Q ss_pred ccCcccceEEEEC---CCCCCEEEEEeCCC
Q 001396 1021 SCLHVYPHAIAAH---PLKPTQFAVGLTNG 1047 (1086)
Q Consensus 1021 ~~~~~~~~~~~~~---p~~~~~l~~~~~dg 1047 (1086)
...+.+++|. | |++.|.++...+
T Consensus 254 ---~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 ---VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp ---CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred ---cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1346789998 6 566666665543
No 273
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.42 E-value=0.00052 Score=73.97 Aligned_cols=235 Identities=9% Similarity=0.025 Sum_probs=133.1
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001396 796 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 872 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 872 (1086)
...+..+++.+ +..++++..+.|.. ....|+.-.... .+...+..+++.+ ++++++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899986 55666666675433 222233222222 2335678888877 67666655 4564432 1222322
Q ss_pred E-EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCC
Q 001396 873 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 951 (1086)
Q Consensus 873 ~-~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 951 (1086)
- ....++...+..+++.+++.+++.+...+..+-+|-. +. ....+... .. ..+..+++++++..++++.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRT--TS---RRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECC--SS---SCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCC--CC---CccceeEECCCCCEEEEeCCc
Confidence 1 2223455678999999999888766544333333321 11 11222221 11 257889999999988888888
Q ss_pred eEEEEEcCCccceeccccC---CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccce
Q 001396 952 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1028 (1086)
Q Consensus 952 ~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1086)
.+++.+...|+.......+ +...+..+.+.+++..++++ .+|.| .+..+.|+--..+......+. .+ .
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~--~ 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NF--Y 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CC--C
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----Ce--E
Confidence 8877654435443332222 23468899999988877755 57777 456666644333321111111 13 3
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1029 AIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1029 ~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
++.|.+ ...+++++.+|.|.-++-
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEECC
T ss_pred EEEEEC--CCceEEEcCCceEEEEcC
Confidence 566654 356778889998776653
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.41 E-value=0.00062 Score=72.91 Aligned_cols=238 Identities=9% Similarity=-0.042 Sum_probs=145.5
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC---CceeEE-eecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~---~~~~~~-~~~h~ 479 (1086)
+|+.+.. ..|+..|+.+++... +......+..++|.++++. ++++-...+.|..+++.+ +..... +...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444443 348888988765332 2223456789999987764 555666678999999876 222222 32222
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ..+.|...++...
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence 34567777432 34455666778899999987655444444444567899999977776655431 1357888887543
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
....+.... ....+.+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 154 -~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 -DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp -CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred -CeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 333332211 25678999999888887765 5678999998754333222222222234677775 355555555678
Q ss_pred cEEEEECCCCCeeeec
Q 001396 639 RIKILETPESNSVDAA 654 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~ 654 (1086)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8988887766555444
No 275
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.40 E-value=0.012 Score=71.85 Aligned_cols=532 Identities=11% Similarity=0.044 Sum_probs=274.7
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|.++....+|. |-.|+.+ -+..||..+++.... .......|.++.. .+| .|..+
T Consensus 63 ~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 3688888888885 4455554 478999877542210 0111235777765 345 56566
Q ss_pred eCCCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecC----Ccce
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH----GAPV 482 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h----~~~v 482 (1086)
+.+| +..+|..+++......... .....|.++....+|. +.+ |+.. -+..+|..+++..... ... ...|
T Consensus 119 t~~G-l~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i 193 (758)
T 3ott_A 119 ALNG-LYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFV 193 (758)
T ss_dssp ETTE-EEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCE
T ss_pred cCCc-ceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCcccccccee
Confidence 6664 8889987654221000000 1134688888888877 333 4444 5778887766532211 111 1236
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.++.. +.++..|..|+. +-+..+|..+.............|.++....+|.+.+.. . . -+.+++..++...
T Consensus 194 ~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 194 NSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTPLQ 264 (758)
T ss_dssp EEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSCCE
T ss_pred EEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCcEE
Confidence 66655 334445555554 457778876654322212223457788888788766543 2 2 2788888766543
Q ss_pred eEEec----ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc-----CCCCCCCCceEEEecCCCEEEE
Q 001396 563 RTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-----AGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 563 ~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
..... .......|.++....+|. |-.|+..| +.++... .. ..... .......|.++.-..+|.+.+
T Consensus 265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi- 339 (758)
T 3ott_A 265 HIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF- 339 (758)
T ss_dssp EECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-
T ss_pred EEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-
Confidence 22111 111235688888877765 45555566 5544332 11 11111 011112466676666776444
Q ss_pred EECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 634 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
|+.+| +..++..++.... + ..+... .
T Consensus 340 Gt~~G-l~~~~~~~~~~~~-~--------------------------------------------------~~~~~~--~ 365 (758)
T 3ott_A 340 GGANG-LIRFTDPAGERHD-A--------------------------------------------------IWYRMG--D 365 (758)
T ss_dssp EETTE-EEEESCTTSSCCC-C--------------------------------------------------EEECTT--C
T ss_pred eeCCc-ceeecccccccce-e--------------------------------------------------EEeccC--C
Confidence 45544 5555443321000 0 000000 0
Q ss_pred CccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCC
Q 001396 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 793 (1086)
Q Consensus 714 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 793 (1086)
. +.......|.++.-..+|...+.+ . +-+..++...... ..+... .....
T Consensus 366 ~--------~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~------------~~~~~~--------~~~~~ 415 (758)
T 3ott_A 366 K--------TYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQF------------IHYNIV--------DNTGT 415 (758)
T ss_dssp S--------SSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE------------EEEEEE--------CCC--
T ss_pred c--------CCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcE------------EEeecC--------CCcCC
Confidence 0 000022457777777777755544 3 3455565432211 000000 00000
Q ss_pred CCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCc-----eEE---EEEc---C-CCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 794 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
.....|.++...++|.+.+....+-+.++|..+. ... ..+. + ....|.++...+ ++++.+.++..+-
T Consensus 416 ~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~G 494 (758)
T 3ott_A 416 YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKG 494 (758)
T ss_dssp CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSS
T ss_pred CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCC
Confidence 0234678888888887766555667888886531 111 1221 1 224589999988 7777663343455
Q ss_pred EEEEEcCCceeEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEE
Q 001396 862 ILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 938 (1086)
Q Consensus 862 v~iwd~~~~~~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 938 (1086)
|..+|..+++....... ....+.++....+|.+.+. +..| |..++..++.... .. ..+... ..|.++..
T Consensus 495 l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~~--~~i~~i~~ 566 (758)
T 3ott_A 495 IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFSN--NEILSMTC 566 (758)
T ss_dssp EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----CCEEEEEE
T ss_pred cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCCc--cceEEEEE
Confidence 88899887765432211 1346788888888887765 4555 8888876644222 11 111111 35777776
Q ss_pred ecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEEECCCcEEEEEcC
Q 001396 939 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 939 s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
. +|.+.+++ ++.+..+|..+.+...--.. ...+....+. +|| .|..|+.+|.+. ++..
T Consensus 567 ~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G-~l~fG~~~Gl~~-f~p~ 625 (758)
T 3ott_A 567 V-KNSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKED-CVYLGGADGFGI-SHSN 625 (758)
T ss_dssp E-TTEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTT-EEEEECBSEEEE-EEC-
T ss_pred C-CCCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCC-cEEEecCCceEE-EChh
Confidence 4 66555544 55688889887654321111 1223334444 466 455577888554 4543
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.00053 Score=74.53 Aligned_cols=249 Identities=11% Similarity=-0.010 Sum_probs=154.2
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.+..+|.+..+++ +|+++ ....|+..++........ .. ....+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCc-eeEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 3456777777755 44443 235688888765543221 22 2345789999987666665
Q ss_pred E-eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEe
Q 001396 408 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 408 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 486 (1086)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 5 466789999988764222 12222344678999986664 456666678999999765443333333445668888
Q ss_pred ecccCCccEEEEEEcC-CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 487 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
+.+. ++.++++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 34455555555 78888888765444433334446789999998888877643 2568999998754333333
Q ss_pred ecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 566 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 3222 456677773 34444444567778888876776665554
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.39 E-value=5.9e-05 Score=90.40 Aligned_cols=120 Identities=12% Similarity=0.181 Sum_probs=76.8
Q ss_pred EEEEec-CCCEEEEEeeCCC-------CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEE
Q 001396 528 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 598 (1086)
Q Consensus 528 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~i 598 (1086)
.+++.+ +++.++.|+...+ +...+.+||..+++..........+.....++++..+++.++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 8888888775432 123689999998765433222111113344577888999888887 4568999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CC-----CcEEEEECCCC
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES 648 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~ 648 (1086)
||..+++....-...... .-.+++..+++++++.|+ .+ ..+.+||..++
T Consensus 270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 999987655443322221 123466667999999988 34 45777877655
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.38 E-value=0.00023 Score=72.18 Aligned_cols=208 Identities=7% Similarity=-0.007 Sum_probs=134.5
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.|.|-.+++..++|+|+++.|.++...++.|...|.. |+.+.... +.+ ....-.+++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 45667777999999999887778888889999999997 77665422 222 256778899999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEec------cccccEeEEEecCCCCcEEEEEEeCCC-cEEEEeC-CCCceeE
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDK-TIKVWDA-VTGSRTY 473 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~d~~~l~l~s~~~d~-~i~iwd~-~~~~~~~ 473 (1086)
+.++++.-.++.+.++++.....+....... ........++|+|+++.++++ .-.+. .|..|+- ..+..+.
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va-~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF-KEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE-EESSSEEEEEEESTTCSSCCE
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEE-ECcCCceEEEEcccccCCcee
Confidence 9877776667889999987655322111111 233456899999999853333 22232 4555551 1122222
Q ss_pred Eee-------cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC---------CceEEEEEecCCCE
Q 001396 474 SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGRR 537 (1086)
Q Consensus 474 ~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~d~~~ 537 (1086)
.+. .+...+.+++++|. .+++++.....+.+.++|.+.. .+..+.... .....|+|.++|+.
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred eecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 221 12345678888875 4577778888888999987644 444333332 25689999999986
Q ss_pred EEEEeeCCCCceeEEEEeC
Q 001396 538 LFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~ 556 (1086)
.++ +. .+.++.+..
T Consensus 238 yIv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 238 YIV-SE----PNRFYRFTP 251 (255)
T ss_dssp EEE-ET----TTEEEEEEC
T ss_pred EEE-cC----CceEEEEEe
Confidence 655 32 335666653
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.38 E-value=0.00042 Score=76.58 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=154.7
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 408 (1086)
.-.|.+..+++ +|+++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEEe
Confidence 45576766754 34443 336788888876543321 1 223457899999866666555
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 466789999988764221 12222334567899986664 45566667789999976544333333334567888886
Q ss_pred ccCCccEEEEEEcC-CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 489 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 489 ~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
+. ++.++++-... +.|...+++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 43 34455555455 78888888765554444444456789999998888777643 256899999875433333332
Q ss_pred ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
.. .....+++. .+..+++-...+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 456777773 344445555678888888777776666653
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.36 E-value=0.00053 Score=74.57 Aligned_cols=248 Identities=11% Similarity=-0.022 Sum_probs=153.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
..+|.+..++ .+|+.+. ...|+..++.+.... .+......+..++|.+.++. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 3445555663 3444443 334777787664322 12223345789999987664 455556678999999876654
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
...+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+...... ...|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence 4433333344566777533 445666667778999999886655544444445678999999777776654311 3678
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
+..++..... ..+.... ....+.++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+
T Consensus 185 ~r~~~dG~~~-~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 185 EASSMDGSGR-RIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEEETTSCSC-EESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred EEEeCCCCCc-EEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence 8888765432 2222111 24678999999877777765 5678999998754433333322 233567777 34555
Q ss_pred EEEEECCCcEEEEECCCCCeeeecc
Q 001396 631 LAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
+++-...+.|..++..++.....+.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 5555567788888866665555444
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.36 E-value=0.00036 Score=77.12 Aligned_cols=247 Identities=11% Similarity=-0.040 Sum_probs=153.9
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.|.+..+ ..+|+.+.. ..|+..++.++.... +......+..++|.+.++. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555 334544433 458888887654322 2223345789999987664 45566667899999987665444
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.........+++.+. ++.++++-...+.|.+.+++.................++++|.+..|+..... ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 33323334456777433 34556666677889988887655444444444567899999988777765431 1367888
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+++............. ...+.++++|++..|+.+. ..+.|..+|+........+... ......+++ .++.+++
T Consensus 230 ~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 8876543333222222 4678999998877777665 5678999998754433333322 233567887 3455555
Q ss_pred EEECCCcEEEEECCCCCeeeeccc
Q 001396 633 VIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
+-...+.|..++..++.....+..
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEEC
T ss_pred eeCCCCeEEEEECCCCcceEEEcc
Confidence 556678888888666665555543
No 282
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.36 E-value=7.5e-05 Score=74.46 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=124.9
Q ss_pred CCCeeEEEeecCCCEEEEEe-C--CeEEEEEccCceEEEEEcCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 796 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
..-...+.|++ +.+..+.+ + +.|+.+|+.+++.+....-.... -..+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34466899987 45545444 3 48999999999999887644332 2345554 45666666778999999999999
Q ss_pred eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eC
Q 001396 872 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 950 (1086)
Q Consensus 872 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 950 (1086)
.+.++..-. .=. .+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-Cce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 999987432 223 444677777766678889999998866544322221 11110 134456655 66655554 57
Q ss_pred CeEEEEEcCCccceeccccC------------CccCEEEEEEeCCCCEEEEEEC
Q 001396 951 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
+.|.+.|.++|+.+..+..+ -..-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 78999999999987664322 1235688999998877776664
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.35 E-value=0.00037 Score=70.65 Aligned_cols=218 Identities=13% Similarity=0.137 Sum_probs=136.2
Q ss_pred EEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001396 832 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 832 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 910 (1086)
.+.+-...+..++++|++++++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999556677778889999999998 887777642 22457889999999887776677889999987
Q ss_pred CCce-eeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCC---ccceecc------ccCCccCEEEEE
Q 001396 911 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQW------FPISSVPISQAT 979 (1086)
Q Consensus 911 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~---~~~~~~~------~~~h~~~v~~l~ 979 (1086)
.... ..........+..........++++|++..|.++ ......+|.+.. ...+... ...+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6442 1112222111111222458999999999777764 333344554431 1111111 011345678999
Q ss_pred EeCCC-CEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 980 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 980 fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
|.|.. .+++.......+.++|.. |+.+..+....-.. +.....-.+-.++|+| +|+++++ +.-+.++++.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 99954 455666666788889966 55665555321100 0001123457899999 6775554 77776666643
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.33 E-value=0.00011 Score=89.16 Aligned_cols=201 Identities=6% Similarity=-0.029 Sum_probs=115.3
Q ss_pred CCCc-cEEEEEEC-CCCCEEEEEeC-C----CEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCC-
Q 001396 388 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 458 (1086)
Q Consensus 388 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d- 458 (1086)
+|.. .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 4553 78899999 99999997643 2 35999999998 63321 111 12457899999995 3333333
Q ss_pred ----CcEEEEeCCCCcee--EEeec-CCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCCCc-ee--EEe-cCCCC
Q 001396 459 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL 524 (1086)
Q Consensus 459 ----~~i~iwd~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~-~~--~~~-~~~~~ 524 (1086)
..|.++++.++... ..+.. .......+.| ++||++|+..+. ...|.++|+.+.. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898877532 33322 2234455566 557777776653 3468888887752 22 222 22333
Q ss_pred ceEEEEEecCCCEEEEEeeCC-CCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEE-EEEECCCc--EEEE
Q 001396 525 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 599 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~iw 599 (1086)
...++.|+ +|+.|+..+... .+...|+.+|+.++ +....+..+. ....+..+.+. ++.| ++...++. |+++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443 366666555432 34668889998763 3222022222 01234455554 4455 44566775 4555
Q ss_pred Ec
Q 001396 600 DM 601 (1086)
Q Consensus 600 d~ 601 (1086)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.31 E-value=0.0011 Score=73.40 Aligned_cols=248 Identities=9% Similarity=-0.035 Sum_probs=154.4
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 479 (1086)
+|+.+. ...|+..++.+..... +......+..++|.+.++. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 4568888887754322 2334557889999987664 4555556788999998652 2233333334
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ....|+..++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677887543 34566666778899999988766555555455567899999977777665421 1356888887654
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 4333333222 5678999999888887765 5678999998765444444332222334567763 344555555678
Q ss_pred cEEEEECCCCCeeeeccccccceeee
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKL 664 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~ 664 (1086)
.|..++..+++....+.........+
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceE
Confidence 88888877776665554333333333
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.28 E-value=0.0016 Score=69.70 Aligned_cols=232 Identities=9% Similarity=-0.054 Sum_probs=139.6
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eCCCEEEEEEecCC---Cccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR 426 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~---~~~~ 426 (1086)
..|+..|+.+++.... . .....+..++|++++..|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788999887654321 1 123567899999876666555 45688999998762 2111
Q ss_pred cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC-CeE
Q 001396 427 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 505 (1086)
Q Consensus 427 ~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i 505 (1086)
. .+...-.....+++.+.++. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222245678999876654 4556667889999997654433333333456678888543 33344444333 788
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
...+++...........-.....+++++++..|+.+-. ....|..+|..... .+.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCE
Confidence 88887654443333334456789999998888877643 25679999987433 33332211011345677775 344
Q ss_pred EEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 586 QILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44445567788888887776555553
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.17 E-value=0.0037 Score=67.21 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=147.5
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..+.+|.|.+++. ++++|. .|.| +.....|+. |..... ........+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE-E
Confidence 4789999988876 566654 4544 333333431 110000 0112345788999986 44444 4
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcceEEEee
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCP 487 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~ 487 (1086)
+..+.|.. ..+.|+..........+.+.+..+.+.+++. +++.+ .++.|..- ...|+.- .....+...+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 55664433 3344544332211112345577888877776 45544 46654332 1334332 222345567788887
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
.+ ++.+++.+...+..+-+|-....-..........+..+++.++++.++.+. ++.+++.+...|+.-..+..
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBC
T ss_pred cC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccC
Confidence 54 555665554333333333211111111223445788899999988776553 44566664333433332221
Q ss_pred c-cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 568 L-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 568 ~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
. ......+..+.+.+++..+++ +.+|.| .+..+.|+.-..+... .....+..+.|.+++ .+++++.+|.|.-++-
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 1 001135888999887665554 456766 4555556554444422 112347889887655 4666677887766553
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.14 E-value=0.00045 Score=77.40 Aligned_cols=248 Identities=11% Similarity=0.050 Sum_probs=142.9
Q ss_pred CeeEEEeecC--CCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC---C-eEEEEEcCCc
Q 001396 798 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 870 (1086)
Q Consensus 798 ~v~~l~~s~d--g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~ 870 (1086)
....++++|+ +..|..+. .+.|+.+|..+++..... ........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 44455554 488999999877765443 3556789999999 77755544321 1 2333333222
Q ss_pred ee-EEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE
Q 001396 871 EV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 948 (1086)
Q Consensus 871 ~~-~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 948 (1086)
.. ...+. .......+++.| +|.++++-..++.|+.++..++.... ....... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 233456789999 77777666677889999988665411 1111111 1 123479999999966654
Q ss_pred --eCCeEEEEEcC--Cccce--ecccc-----C---------CccCEEEEEE---------eCCCCEEEEEECCCcEEEE
Q 001396 949 --HETHLAIYEAE--ELTCL--KQWFP-----I---------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 999 (1086)
Q Consensus 949 --~d~~i~vwd~~--~~~~~--~~~~~-----~---------h~~~v~~l~f---------s~dg~~l~s~~~Dg~v~vW 999 (1086)
..+.|..++.. ++... ..+.. + .-.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789888865 23211 01000 0 1234677999 6777777766667789999
Q ss_pred EcCCCceeeeecccc-----ccC--CCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1000 EASNLEVQCRILSTA-----YLR--PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1000 d~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
+. +|......-... +.. ......-..|..++++|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 564432221110 000 00001123578899995455655555556778887763
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.00068 Score=75.95 Aligned_cols=246 Identities=12% Similarity=0.039 Sum_probs=140.4
Q ss_pred CeeEEEeec-CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC-CC----eEEEEEcCCc
Q 001396 798 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS 870 (1086)
Q Consensus 798 ~v~~l~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~ 870 (1086)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|.++.. ++ .+...+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456899998 455566665 4789999998766544433 556688999999 7875555544 22 3444443 33
Q ss_pred eeE--EEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 871 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 871 ~~~--~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
... ..+.. ......++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 22221 23456789999 77777776678889999998754321 1121111 24678999999996665
Q ss_pred E--eCCeEEEEEcCC--ccc--eecccc-----C---------CccCEE-EEEEe--------CCCCEEEEEECCCcEEE
Q 001396 948 V--HETHLAIYEAEE--LTC--LKQWFP-----I---------SSVPIS-QATFS--------CDCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 948 ~--~d~~i~vwd~~~--~~~--~~~~~~-----~---------h~~~v~-~l~fs--------~dg~~l~s~~~Dg~v~v 998 (1086)
+ ..+.|..++... +.. +..+.. + .-.... .++.. ++|.++++=...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567888887653 211 111000 0 011223 45553 34555555555678888
Q ss_pred EEcCCCceeeeecccc--ccC-----CCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 999 HEASNLEVQCRILSTA--YLR-----PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 999 Wd~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++ ..|.......... ... ......-..|..++++|+++.++++-...+.|+.+++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443322100 000 00001123678999998444555554455678877653
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.03 E-value=0.006 Score=65.00 Aligned_cols=239 Identities=9% Similarity=-0.021 Sum_probs=146.7
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v 482 (1086)
+|+.+ ....|+..++.+...... .+......+.+++|.+.++. ++++-...+.|..+++..+... ..+...-...
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEE-ccCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 34444 345689999887641111 11122345678999987664 5566667789999998766432 2222222345
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
..+++.+. ++.++++-...+.|.+++++.................+++.|.+..|+..... ....|+..++.... .
T Consensus 82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~ 157 (318)
T 3sov_A 82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-R 157 (318)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-C
T ss_pred cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-e
Confidence 56777432 44566666778899999987655444444455567899999977776665421 24678888876433 2
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
..+.... -...+.+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|.
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 3332111 24678999999877777765 567899999875433333321 123346777753 34555555678888
Q ss_pred EEECCCCCeeeecc
Q 001396 642 ILETPESNSVDAAG 655 (1086)
Q Consensus 642 iw~~~~~~~~~~~~ 655 (1086)
.++..+++....+.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 88887776554443
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.0063 Score=67.33 Aligned_cols=250 Identities=8% Similarity=-0.057 Sum_probs=150.0
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 410 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~ 410 (1086)
.|.+..+.. +|+++ . ...|+..++....... +......+..++|++.+..|..+ ..
T Consensus 76 ~C~~~~~~~-~ll~~-~-~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFT-N-RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEE-E-TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEe-c-cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344443333 34443 2 3778888887654332 11234678899999876666655 45
Q ss_pred CCEEEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 411 KHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
.+.|+.+++.+..... ....+.........+++.+.++. ++++-...+.|.+.+++.......+.........+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 6789999987632110 11122223456788999886554 556666678999999876554444443445578888865
Q ss_pred cCCccEEEEEEc-CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 490 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 490 ~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
. ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-. +...|..+|+............
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 3 3334444323 478888888765555444444457789999998888887643 2567999998754433333321
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 569 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11345566663 23344445567788888877777666654
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0023 Score=71.60 Aligned_cols=239 Identities=13% Similarity=0.077 Sum_probs=134.9
Q ss_pred CceEeeecC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 330 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
....++++| ++..|.++-. .+.|..+|..++.... +.........++|+++|++|.++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 568899998 4545455443 3889999988765432 11234568899999999966666
Q ss_pred eCC----C-EEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-CCcc
Q 001396 409 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 481 (1086)
Q Consensus 409 ~~d----~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~ 481 (1086)
... . .+.+.+. .+.... ...+. .......++++| +|. ++++-..++.|..++..++........ ....
T Consensus 197 d~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp ECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred eCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 542 2 3433443 333221 11222 123467889999 565 666666788999999887654222221 2234
Q ss_pred eEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCce----eEEecCC---------------CCceE-EEEEe--------
Q 001396 482 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCT-RMAYS-------- 532 (1086)
Q Consensus 482 v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~-~~~~s-------- 532 (1086)
...+++++ ++. ++++-...+.|..++.+.... ...+... -.... .++..
T Consensus 272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp CEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred ceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 66788854 666 455556778899988764311 1111111 00122 45553
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc---------c------ccCCceEEEEEecCCCEEEE-EECCCcE
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------Q------LQHNSVSVVHFDTAKDQILA-AGDDHVI 596 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~------~~~~~v~~~~~~~~~~~l~~-~s~dg~i 596 (1086)
++|.+.++-.. ...|+.++ .+|... .+.+. . ..-.....++++|++..|+. -..++.|
T Consensus 350 ~~g~lyvaD~~----n~~I~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI 423 (430)
T 3tc9_A 350 DEYDFYFCDRE----NHCIRILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI 423 (430)
T ss_dssp CCEEEEEEEGG----GTEEEEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred CCCeEEEEECC----CcEEEEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 23444444322 55788888 345433 33321 0 00125788999985444444 4456777
Q ss_pred EEEEcC
Q 001396 597 KIWDMN 602 (1086)
Q Consensus 597 ~iwd~~ 602 (1086)
+.++++
T Consensus 424 r~i~~e 429 (430)
T 3tc9_A 424 RKIGYE 429 (430)
T ss_dssp EEEEEC
T ss_pred EEEccC
Confidence 777654
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.00 E-value=0.006 Score=64.98 Aligned_cols=232 Identities=12% Similarity=0.004 Sum_probs=141.8
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eCCCEEEEEEecCCCccccc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 428 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 428 (1086)
...|+..|+.......... .. ....+.+++|.+.+..|..+ ...+.|..+++.++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3678999987764211100 11 12356789999865555544 5667899999887642211
Q ss_pred eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE--cCCeEE
Q 001396 429 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK 506 (1086)
Q Consensus 429 ~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~ 506 (1086)
.+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.+. ++ .|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g-~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SG-FMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GT-EEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CC-EEEEEecCCCCEEE
Confidence 12222345678999876664 4556666789999997654333333334455678888653 23 444444 357888
Q ss_pred EEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE
Q 001396 507 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 586 (1086)
Q Consensus 507 vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 586 (1086)
..+++...........-.....+++++++..|+.+-. ....|..+|+..........+.. .....+++.. +..
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l 221 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL 221 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence 8887754444333333446789999998888877643 25689999987543322232222 4566777753 334
Q ss_pred EEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 587 ILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 587 l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++-...+.|..++..+|+....+.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCeEEEEECCCCCceEEEe
Confidence 4444567889999988877666654
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.98 E-value=0.0063 Score=73.05 Aligned_cols=238 Identities=10% Similarity=-0.027 Sum_probs=147.5
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 479 (1086)
+|+.+ ....|+..++....... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 33457888877654322 2334556789999986664 5556666788999998753 2233333234
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.....|++.+. .+.++++-...+.|.+.+++.................|++.|.+.+|+..... ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45667777543 33566666778899999998766555555455568899999987777665421 1357888888754
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE 637 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~d 637 (1086)
.....+.... .....|++++.+..|+.+. ..+.|...++........+...........|++. +..|+.+ ...
T Consensus 548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 4433333322 5788999998888887765 4567999998765554444433222333456654 3345444 455
Q ss_pred CcEEEEECCCCCeeeecc
Q 001396 638 NRIKILETPESNSVDAAG 655 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~ 655 (1086)
+.|...+..++..+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 778888877765555443
No 295
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.92 E-value=0.0022 Score=71.73 Aligned_cols=239 Identities=15% Similarity=0.083 Sum_probs=136.3
Q ss_pred CceEeeecCC--CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 330 SPMSMDFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 330 ~V~~~~~spd--g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
....++|+|+ +..|.++-.. +.|+.+|..++.... +.+.......++|+++|+++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyVa 198 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVVV 198 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEEE
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEEE
Confidence 5679999995 3334554333 889999998776543 2223456889999999994444
Q ss_pred EeCC---C-EEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeec--CCc
Q 001396 408 AYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGA 480 (1086)
Q Consensus 408 ~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~ 480 (1086)
.... . .+...+...+. .. ...+. .-.....+++.| +|. ++++-..++.|+.+|..++.....+.. ...
T Consensus 199 d~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 199 DDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp ECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred cCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 4311 2 23333433221 11 01111 233456789999 565 566666678899999887876333321 122
Q ss_pred ceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCce----eEEecCC---------------CCceEEEEE---------
Q 001396 481 PVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY--------- 531 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~~~~~--------- 531 (1086)
.-..+++++ ++. ++++-...+.|+.++++.... ...+... -.....+++
T Consensus 274 ~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 274 SNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp SCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 234577754 566 455556678899988763211 1111111 123567888
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc---------------cCCceEEEEEe-cCCCEEEEEECCCc
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDHV 595 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~s~dg~ 595 (1086)
.++|.+.++-.. ...|+.++. +|.. .++.+... .-.....++++ +++..+++-..++.
T Consensus 352 d~~g~lyvaD~~----n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 425 (433)
T 4hw6_A 352 EDEYDFYFCDRD----SHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHR 425 (433)
T ss_dssp SCCEEEEEEETT----TTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred CCCCcEEEEECC----CCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCE
Confidence 566665555432 567888885 5543 34333210 11346788888 45544444445667
Q ss_pred EEEEEcC
Q 001396 596 IKIWDMN 602 (1086)
Q Consensus 596 i~iwd~~ 602 (1086)
|+.++++
T Consensus 426 Ir~i~~e 432 (433)
T 4hw6_A 426 VRKIAPE 432 (433)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 7777654
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.90 E-value=0.013 Score=70.35 Aligned_cols=214 Identities=10% Similarity=-0.043 Sum_probs=131.6
Q ss_pred CccEEEEEECCCCCEEEEE-eCCCEEEEEEecCCCcc-ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001396 390 GVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
...+..|+|.+.+..|... ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4567899999865555544 55678999998763210 011122334456778999988875 56666778899999977
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEcC-CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
.......+.........|++.+. .+.++++-... +.|...+++.................|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 54433333334456788888654 23344444333 78888888766555555545567889999988888877643
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEc
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+...|...++............. ......+|++. +.+|+.+. ..+.|...|..+|+.+..+.
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 25679999987554444433311 11234456653 34555544 56778888877776665553
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0053 Score=64.53 Aligned_cols=195 Identities=11% Similarity=0.148 Sum_probs=124.5
Q ss_pred CCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC---CCC---EEEEEe-C--CCeEEEEEcC--CceeEEE
Q 001396 808 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISK 875 (1086)
Q Consensus 808 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~-~--dg~v~iwd~~--~~~~~~~ 875 (1086)
..+++... .+.+.+||+ +|+.++.+.. +.++.+.+-|. +++ ++++.. . +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34444333 578999999 8999888864 56777776651 122 233333 3 5799999773 443 444
Q ss_pred ecc------cc-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEECCC---CceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 876 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 876 l~~------h~-~~v~~l~~--spd-g~-~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +. ...+.++.+.-. +.+..++..+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC----CCcceEEEcCC
Confidence 421 11 56777888 774 44 677788899999999843 22 222333333222 25789999999
Q ss_pred CCEEEEEeC-CeEEEEEcC-----CccceeccccCC-ccCEEEEEE--eCCCC-EEEEEE-CCCcEEEEEcC-CCceeee
Q 001396 942 QTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1009 (1086)
Q Consensus 942 g~~l~~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~s~~-~Dg~v~vWd~~-~~~~~~~ 1009 (1086)
...|.++.+ ..|..|+.+ +++.+..+-.++ ...+..|++ .++|+ ||++++ .+.+..|||.. +.+.+.+
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 888888754 445555644 344454332344 347888888 56666 666666 56799999997 7888888
Q ss_pred ec
Q 001396 1010 IL 1011 (1086)
Q Consensus 1010 ~~ 1011 (1086)
|.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.85 E-value=0.037 Score=56.80 Aligned_cols=236 Identities=11% Similarity=0.098 Sum_probs=150.1
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCE
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 413 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 413 (1086)
.-.+|..+ ++|.-. ..++.|+|+++.+.++.+.+ ..+|..=.|-.+. .|+-.+. ..
T Consensus 72 AIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT~-ta 127 (365)
T 2xzh_A 72 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVTD-NA 127 (365)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEES-SE
T ss_pred eeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEcC-Cc
Confidence 34588877 677655 58899999999988876443 2578888887544 5555543 45
Q ss_pred EEEEEecCCCccccceEecccc----ccEeEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 414 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 414 i~iwd~~~~~~~~~~~~~~~h~----~~v~~v~~s~d~~~l~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
|+-|+++....... .+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.+.||.+...
T Consensus 128 VyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 128 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 203 (365)
T ss_dssp EEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred EEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeE
Confidence 99999986443322 344443 367777889999963 33332 2467889996544 4577888988776
Q ss_pred EEeecccCCcc-EEEEEEc---CCeEEEEEcCCC---ce-----eEE-ecC---CCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 484 SLCPHAKENIH-FIFSISV---DGKIKAWLYDSL---GA-----RVD-YDA---PGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 484 ~~~~~~~~~~~-~l~s~s~---dg~i~vwd~~~~---~~-----~~~-~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+.+...+... +++.+.. .+.+++-++... .. ... +.. ...-..++..++.-..++..+.
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK---- 279 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 279 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----
Confidence 66654332222 3333332 258899888543 11 111 111 1223456777777777777765
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
-|.|++||+.++.++..-+-.. ..|...+......-+++....|.|.--.++..
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CcEEEEEEcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 7789999999999887766655 66666666555556666667776665555543
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.012 Score=65.71 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=143.8
Q ss_pred CceEeeecC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE-------CCC
Q 001396 330 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD 401 (1086)
Q Consensus 330 ~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------spd 401 (1086)
....|+|+| ++..|+++....+.|++.|..++........ -.+.......++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence 467899999 4555666666567799999888765532100 0112246899999 999
Q ss_pred CCEEEEEeCCC-------EEEEEEecC-CCccc-c-ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC----
Q 001396 402 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---- 467 (1086)
Q Consensus 402 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~---- 467 (1086)
|++|.++...+ .|.+.+... +.... . ...+... .....++++|++.. ++++-..++.|..+|+.
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99776665443 366666444 22210 0 0112211 23457889996664 56666778889999987
Q ss_pred ---CCce-----------eEE-ee-cCCcceEEEeecccCCccE-EEEEEcCCeEEEEEcCCCcee----EEecCC---C
Q 001396 468 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGAR----VDYDAP---G 523 (1086)
Q Consensus 468 ---~~~~-----------~~~-~~-~h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~----~~~~~~---~ 523 (1086)
++.. ... +. +.......++|++ ++.+ +++-+....|+.++.+..... ..+... .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5654 112 21 1234457888854 6664 555567788998766543211 111110 0
Q ss_pred ------------CceE-EEEEe-------cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-------------
Q 001396 524 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------------- 570 (1086)
Q Consensus 524 ------------~~i~-~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------------- 570 (1086)
.... .++.. ++|.+.++-.. ...|+.++ .+| .+.++.+...
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCC-CEEEEecccccccccCccccccC
Confidence 1233 45554 44555554332 66899998 455 3445544210
Q ss_pred --------cCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEE
Q 001396 571 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLT 608 (1086)
Q Consensus 571 --------~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~ 608 (1086)
.-.....++++++ +..+++=..+..|+.++++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1134668888886 5544555567788888877655443
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=0.007 Score=67.62 Aligned_cols=250 Identities=11% Similarity=0.112 Sum_probs=141.1
Q ss_pred cEEEEEECC-CCCEEEEE-eCCCEEEEEEecCCCccccceEec-cccccEeEEEe-------cCCCCcEEEEEEeCCC--
Q 001396 392 SVNRVVWSP-DGSLLGVA-YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 459 (1086)
Q Consensus 392 ~V~~l~~sp-dg~~las~-~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~-------s~d~~~l~l~s~~~d~-- 459 (1086)
....|+|+| ++..|..+ ...+.|++.|.+++.... +.... ........++| +++|+. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 45555555 444678888888765332 11111 12235889999 999984 44443332
Q ss_pred -----cEEEEeCCC-Ccee-----EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-------CCce------
Q 001396 460 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 515 (1086)
Q Consensus 460 -----~i~iwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------~~~~------ 515 (1086)
.|.+.+... |... ..+... .....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366676443 2321 223221 12345566442 45566777788899999987 4432
Q ss_pred -----e-EEec-CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC--CCCee--eeEEeccc------------ccC
Q 001396 516 -----R-VDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAI--KRTYQGLQ------------LQH 572 (1086)
Q Consensus 516 -----~-~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~~------------~~~ 572 (1086)
. ..+. ........++|+|+|+.|+.+-. +...|+.++. .++.. ...+.+.. ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1122 22345678999999997665532 2567888554 33332 12333320 001
Q ss_pred CceE-EEEEe-------cCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC----------------------CCCCCceE
Q 001396 573 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 622 (1086)
Q Consensus 573 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 622 (1086)
.... .++.. +++..+++-..++.|+.++ .+|. +.++.+.+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 2234 45554 4555666666788899998 4554 33432211 01224578
Q ss_pred EEecC-CCEEEEEECCCcEEEEECCCCCee
Q 001396 623 CFNKN-GTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 623 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+++++ |.++++=..+..|+.++++.....
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 99986 666665566788888888765443
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.0063 Score=63.92 Aligned_cols=193 Identities=12% Similarity=0.135 Sum_probs=120.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeeccc--CCcc---EEEE-EEc--CCeEEEEEcCCCc-eeEEecC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---FIFS-ISV--DGKIKAWLYDSLG-ARVDYDA 521 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~---~l~s-~s~--dg~i~vwd~~~~~-~~~~~~~ 521 (1086)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+. -+|+ ++++ .-. +++|++|+++... .......
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666788999998 9999988864 55666655431 0111 2233 333 5789999875322 2333311
Q ss_pred ------CC-CceEEEEE--ecC-CC-EEEEEeeCCCCceeEEEEeC-------CCCeeeeEEecccccCCceEEEEEecC
Q 001396 522 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 583 (1086)
Q Consensus 522 ------~~-~~i~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 583 (1086)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45667777 674 44 3444433 467878777 234566777653 47889999999
Q ss_pred CCEEEEEECCCcEEEEEcC-----CCeeEEEEcCCCCCCCCceEEE--ecCCC-EEEEEE-CCCcEEEEECC-CCCeeee
Q 001396 584 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 653 (1086)
Q Consensus 584 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~ 653 (1086)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+.++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999777777755 3455555533222224677777 45555 566665 56799999996 4444444
Q ss_pred c
Q 001396 654 A 654 (1086)
Q Consensus 654 ~ 654 (1086)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.70 E-value=0.00021 Score=85.52 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=136.3
Q ss_pred CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC----CceeEEeecCCcceEEEe
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~ 486 (1086)
.+.|++.++.+.+.... ......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~~----~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECC----SCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceee----eccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 35678888776543321 122345678999987764 444445567899999875 222222211122344566
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
+.+. ++.++++-...+.|.++++........+.........++++|.+.+|+..... ..+.|+.+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence 6432 34455665667889999887655444444333456788999977766654321 12568887765432 22222
Q ss_pred cccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 567 GLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 567 ~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
... ....+.|+|+|++..|+.+. ..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 24567899999877666654 567899999875443333332222223456777654 44455556688999998
Q ss_pred CCCCeeeeccc
Q 001396 646 PESNSVDAAGV 656 (1086)
Q Consensus 646 ~~~~~~~~~~~ 656 (1086)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 77766665543
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.70 E-value=0.064 Score=55.07 Aligned_cols=231 Identities=13% Similarity=0.127 Sum_probs=152.7
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccc
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 879 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 879 (1086)
+.-.+|..+.+|.-....++|+|+++.+.+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+..|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 45668999988888888999999999998888763 35676777764 45777666 56899999975 3566666655
Q ss_pred c----CCeEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCC----E
Q 001396 880 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT----R 944 (1086)
Q Consensus 880 ~----~~v~~l~~spdg~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~----~ 944 (1086)
. ..|..-..+++.++++..|- .|.+.+|.++.. .-+..+||.. .-..+-.+|. .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAEEST 215 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeeeeee-----eeEEEecCCCCCCce
Confidence 3 45777888899999876543 367889999874 3455666653 1223333332 2
Q ss_pred EEE-EeC----CeEEEEEcCCc---cc------eeccccC--CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceee
Q 001396 945 FLL-VHE----THLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1008 (1086)
Q Consensus 945 l~~-~~d----~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~ 1008 (1086)
|++ +.. +++++.++... .. +..+++. -..-..++..|+.-..+..-+.-|.|.+||+.+|.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 332 322 57999998543 11 1111111 25566678888877788888899999999999999997
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1009 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
+-+- +.+.+... +.+. +..-++.....|.|.--.+.+.
T Consensus 296 ~nrI--------S~d~iF~t--a~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNRI--------SGETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEC--------CSSCEEEE--EEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred Eecc--------CCCceEEe--cccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 7661 13334422 3333 2345555668888877666543
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.68 E-value=0.014 Score=63.34 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=121.2
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceE--EEEEc---CCCCCeEEEEEcCCC----CCEEEEEeCC-----CeEE
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STIL 863 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d----~~~lasg~~d-----g~v~ 863 (1086)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+| + +.+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 45689999999977776679999998 4432 22222 1235678999999 5 4444443332 6788
Q ss_pred EEEcCCce-----e-EEEec---cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCcee------
Q 001396 864 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 915 (1086)
Q Consensus 864 iwd~~~~~-----~-~~~l~---~h~~~v~~l~~spdg~~l~s~s~d-------------g~i~iwd~~~~~~~------ 915 (1086)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 1 22233 111123579999999877775432 3444444432 100
Q ss_pred -----eeeeeeccCCCccCCCCceEEEEec-CCCEEEE-EeCCeE------EEEEcCCcc------------------ce
Q 001396 916 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL-VHETHL------AIYEAEELT------------------CL 964 (1086)
Q Consensus 916 -----~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~-~~d~~i------~vwd~~~~~------------------~~ 964 (1086)
...... .++. ....++|+| +|.+.++ ...+.+ .|.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 0111 246789999 6776666 222221 233333332 11
Q ss_pred eccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeee-ccccccCCCCccCcccceEEEECCCCCCEEEEE
Q 001396 965 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1043 (1086)
Q Consensus 965 ~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 1043 (1086)
..+ .+......++| .+|.++++....+.|...+++........ ....++. ...++..+++.| ||.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-----~~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-----GFGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-----SSCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-----cCCCeeEEEECC-CCcEEEEE
Confidence 111 12335677888 56776666666677777777654311000 0001111 113567888998 66665554
Q ss_pred e
Q 001396 1044 L 1044 (1086)
Q Consensus 1044 ~ 1044 (1086)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.64 E-value=0.078 Score=56.73 Aligned_cols=238 Identities=12% Similarity=0.090 Sum_probs=150.2
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
+.-.+|..+ ++|.-. ..++.|+|+++.+.++.+.+ ..+|..=.|-.+ +.|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEEc-CC
Confidence 345677776 566654 58899999999988876442 245666666533 4555554 44
Q ss_pred EEEEEEecCCCccccceEecccc----ccEeEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeecCCcce
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~v~~s~d~~~l~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
.|+-|++.+...... .+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.+.||.+..
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999976433222 344443 367778889999963 33332 3467889996654 457788998877
Q ss_pred EEEeecccCCcc-EEEEEEcC---CeEEEEEcCCC---ce-----eEEecC----CCCceEEEEEecCCCEEEEEeeCCC
Q 001396 483 YSLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---GA-----RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 483 ~~~~~~~~~~~~-~l~s~s~d---g~i~vwd~~~~---~~-----~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
..+.+....... ++..+... +.+++-++... .. ...+.. ...-..++..++.-..++..+.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK--- 278 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 278 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---
Confidence 776654333222 33333332 78999988643 11 111111 1223457788888777777765
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
-|.|++||+.++.++..-+-.. ..|...+......-+++....|.|.--.++...
T Consensus 279 -~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred -CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 7789999999999887766544 566666666555566666666666555554433
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.63 E-value=0.0056 Score=63.71 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=124.3
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEE-EcC----CC--CCeEEEEE---cCCCCCEEEEEe---------
Q 001396 799 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGM--------- 857 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~--------- 857 (1086)
-.+++|.+....+..++ .++|..|+...+..... +.. .. ..+..+.+ .| +++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence 34788988666666666 79999999986644333 222 11 13578999 68 688888644
Q ss_pred ----CCCeEEEEEcC---CceeEEEec--ccc-----------CCeEEEEEeCCCCEEEEEeCC-CcEEEEECCCCceee
Q 001396 858 ----DDSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQT 916 (1086)
Q Consensus 858 ----~dg~v~iwd~~---~~~~~~~l~--~h~-----------~~v~~l~~spdg~~l~s~s~d-g~i~iwd~~~~~~~~ 916 (1086)
.+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+......
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 26789999999 777654433 211 247889999999999998877 766655555432211
Q ss_pred eeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccc--eeccccCC---ccCEEEE-EEeCCCCE-EE
Q 001396 917 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-VF 988 (1086)
Q Consensus 917 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l~ 988 (1086)
..+....... ......|++.|||..|++. ..+.|..+|+.+... +..-..+. -.....+ .--.+|+. |+
T Consensus 174 -~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 174 -FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp -EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred -eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 1112211111 1247799999999988883 488899999885433 21100021 1233443 33347777 55
Q ss_pred EEECCCcEEEEEcCC
Q 001396 989 TSFVDGTLSIHEASN 1003 (1086)
Q Consensus 989 s~~~Dg~v~vWd~~~ 1003 (1086)
+.+..+.+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 555566666665554
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.60 E-value=0.018 Score=62.30 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=125.7
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCce-EEEEEc---CCCCCeEEEEEcCC---CCCEEEEEeC---C----CeEE
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STIL 863 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~v~ 863 (1086)
....++|.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 46789999999977776689999987 4454 222221 12356889999993 3544444332 3 5777
Q ss_pred EEEcCCc-------eeE-EEecc-ccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCcee------
Q 001396 864 IYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 915 (1086)
Q Consensus 864 iwd~~~~-------~~~-~~l~~-h~~~v~~l~~spdg~~l~s~s~d-------------g~i~iwd~~~~~~~------ 915 (1086)
.|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+.. ..
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf~ 187 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPFP 187 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSST
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCCC
Confidence 8877654 111 22321 11124679999999888875432 33444444321 00
Q ss_pred eeeeeeccCCCccCCCCceEEEEec-CCCEEEE--EeCC--eEEEEEcCCcc------------------ceeccccCCc
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL--VHET--HLAIYEAEELT------------------CLKQWFPISS 972 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~--~~d~--~i~vwd~~~~~------------------~~~~~~~~h~ 972 (1086)
...... .++. ....++|+| +|.+.++ +.+. .|.+.. .|. .+..+.. ..
T Consensus 188 ~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~ 258 (354)
T 3a9g_A 188 NSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS-ET 258 (354)
T ss_dssp TCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-CC
T ss_pred CCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-CC
Confidence 000111 1111 256899999 6776666 2222 243332 222 1111101 13
Q ss_pred cCEEEEEEe-------CCCCEEEEEECCCcEEEEEcCCC-ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001396 973 VPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1044 (1086)
Q Consensus 973 ~~v~~l~fs-------~dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 1044 (1086)
.....++|. .+|.++++....+.|...+++.. ....... .+.. ...++..+++.| |+.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEEe
Confidence 467888883 57877777666778888888753 3321111 1111 123567899999 677666654
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.57 E-value=0.13 Score=55.15 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=153.5
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccc
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 879 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 879 (1086)
+.-.+|..+.+|.-...+++|+|+++...+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 566788888888888889999999999988887643 3555556653 44677665 66899999974 3566666655
Q ss_pred c----CCeEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCC----E
Q 001396 880 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT----R 944 (1086)
Q Consensus 880 ~----~~v~~l~~spdg~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~----~ 944 (1086)
. ..|..-..++|.++++..|- .|.+.+|+++.+. -+..+||.. .-..+-.+|. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST 214 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEEE
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCce
Confidence 3 45777888999999886542 4678899998743 455666653 2223333332 2
Q ss_pred EEE-Ee----CCeEEEEEcCCc---cc------eeccccC--CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceee
Q 001396 945 FLL-VH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1008 (1086)
Q Consensus 945 l~~-~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~ 1008 (1086)
|++ +. .+.++|.++... .. +...++. -..-..++..|+.-..+...+.-|.|.++|+.+|.++.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 333 32 268999998543 11 1111111 25566788889888888888899999999999999987
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1009 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
+-+ -+.+.+.. -+.+. +..-++.....|.|.--.+.+.
T Consensus 295 ~nr--------Is~~~iF~--t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 295 MNR--------ISGETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEE--------CCSSCEEE--EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred eec--------ccCCceEE--ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 766 11333442 33333 2445666668888877776543
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.52 E-value=0.0004 Score=83.06 Aligned_cols=205 Identities=9% Similarity=0.013 Sum_probs=124.1
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEEccC----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 797 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789999887777775 47899999875 12211221122334678888635666666566789999998865
Q ss_pred eeEEEeccccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE
Q 001396 871 EVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 948 (1086)
Q Consensus 871 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 948 (1086)
.....+.........|++.|++.+|+.+.. .+.|.+.+++...... .+.. . . .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~--~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS--S-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC--C-C---CCccEEEEeccCCEEEEE
Confidence 443333333345678999997655554432 2678877776532111 1111 1 1 135689999987766654
Q ss_pred --eCCeEEEEEcCCccceecccc--CCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 949 --HETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 949 --~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
..+.|.++++.... ...+.. ........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 55689999986432 222222 11223345566544 455555566889999998898877665
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.37 E-value=0.078 Score=57.32 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=117.1
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC---CCEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL 405 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 405 (1086)
...+.++|.|||+ ++++ ..+|.|.+++ +++......+. ...........|+|+|| +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCEE
Confidence 3678999999997 4555 4569999998 44422110000 12223457889999998 5555
Q ss_pred EEEeC-C-----CEEEEEEecCCCcc--ccce-Eec---cccccEeEEEecCCCCcEEEEEEeC-------------CCc
Q 001396 406 GVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITCGD-------------DKT 460 (1086)
Q Consensus 406 as~~~-d-----~~i~iwd~~~~~~~--~~~~-~~~---~h~~~v~~v~~s~d~~~l~l~s~~~-------------d~~ 460 (1086)
.++.. . +.|..|+...+..- +.+. .+. +.......++|.|||. ++++.+. .+.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~G~~~~~~~~~d~~~~~g~ 170 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTTGEVYERELAQDLASLGGK 170 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEECCCTTCGGGGGCTTCSSSE
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEECCCCCCccccCCCCCceE
Confidence 55433 2 57888888754211 1111 122 1112346899999996 4554332 245
Q ss_pred EEEEeCCCC------------ceeEE-eecCCcceEEEeecccCCccEEEEEEcCCeE------EEEEcCCCc-------
Q 001396 461 IKVWDAVTG------------SRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKI------KAWLYDSLG------- 514 (1086)
Q Consensus 461 i~iwd~~~~------------~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i------~vwd~~~~~------- 514 (1086)
|.-++.... ..... ..++.. ...++|++. ++.++++-...+.+ .+.-+..+.
T Consensus 171 I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rn-p~g~a~d~~-~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~ 248 (352)
T 2ism_A 171 ILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRN-PQGLAWHPK-TGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRV 248 (352)
T ss_dssp EEEECTTSSBCTTCTTTTCTTSCTTEEEECCSE-ECCCEECTT-TCCEEEEEECC------CCCEEEEECTTCBCCTTTC
T ss_pred EEEEcCCCCCCCCCcccCCCCCCccEEEEcCCC-cccEEEECC-CCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcc
Confidence 666665420 11111 123322 445667542 34444443333321 122222221
Q ss_pred -----------eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee------eeEEecccccCCceEE
Q 001396 515 -----------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 515 -----------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~~~~~v~~ 577 (1086)
....+ .+......++| .+|..+++... .+.|...++..... ...+... ...+..
T Consensus 249 ~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~----~~~v~~v~~~~~~~~~~~~~~~~~~~~---~~rp~~ 319 (352)
T 2ism_A 249 VGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLR----GQALLRLVLEGERGRWRVLRVETALSG---FGRLRE 319 (352)
T ss_dssp CSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETT----TTEEEEEEEEEETTEEEEEEEEEEEES---SCCEEE
T ss_pred cCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECC----CCEEEEEEECCCCcceeecchheeccc---CCCeeE
Confidence 11122 12224566777 56665554332 34566666553321 1222211 257889
Q ss_pred EEEecCCCEEEEEE
Q 001396 578 VHFDTAKDQILAAG 591 (1086)
Q Consensus 578 ~~~~~~~~~l~~~s 591 (1086)
+++.|||...++..
T Consensus 320 v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 320 VQVGPDGALYVTTS 333 (352)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999987666643
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.36 E-value=0.14 Score=55.37 Aligned_cols=232 Identities=17% Similarity=0.146 Sum_probs=119.6
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC---CCE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 404 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 404 (1086)
-...+.++|.|||+ |+++ ..+|.|.++| .+|+ .....+. +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 34688999999997 4554 5559999997 4454 1110100 01223456889999998 555
Q ss_pred EEEEeC----C----CEEEEEEecCCC-cc---ccc-eEec-cccccEeEEEecCCCCcEEEEEEeC-------------
Q 001396 405 LGVAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD------------- 457 (1086)
Q Consensus 405 las~~~----d----~~i~iwd~~~~~-~~---~~~-~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~------------- 457 (1086)
|.++.. + ..|..|+...+. .+ +.+ ..+. +.......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554432 3 567888876541 11 111 0111 1111346799999997 5555332
Q ss_pred CCcEEEEeCCCCc----------eeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCc----------
Q 001396 458 DKTIKVWDAVTGS----------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG---------- 514 (1086)
Q Consensus 458 d~~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~---------- 514 (1086)
.+.|...+.. |+ .+.. .++.. ...++|.+. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 2456556643 32 1211 23433 345677542 344444432221 13222 1111
Q ss_pred --------eeEEecCCCCceEEEEEe-------cCCCEEEEEeeCCCCceeEEEEeCCCC-eee--eEEecccccCCceE
Q 001396 515 --------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVS 576 (1086)
Q Consensus 515 --------~~~~~~~~~~~i~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~ 576 (1086)
....+.........++|. .+|+++++... .+.|...++... +.. ..+... ....+.
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~ 315 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLR 315 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCee
Confidence 122221223356778883 56766655432 456777777643 222 122211 125788
Q ss_pred EEEEecCCCEEEEEE
Q 001396 577 VVHFDTAKDQILAAG 591 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s 591 (1086)
.+++.|||...++..
T Consensus 316 ~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 316 DVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEe
Confidence 999999986555543
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.34 E-value=0.03 Score=60.66 Aligned_cols=237 Identities=10% Similarity=0.071 Sum_probs=126.9
Q ss_pred CeeEEEeecCCC-EEEEEeCCeEEEEEccCceEEEEEc-------CCCCCeEEEEEcCC---CCCEEEEEeC-------C
Q 001396 798 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 859 (1086)
Q Consensus 798 ~v~~l~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---d~~~lasg~~-------d 859 (1086)
....|+|.|||+ ++++-..|.|++++.. ++....+. ........++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 7766667999999853 33221111 12345689999993 3544444322 2
Q ss_pred CeEEEEEcCCc-------eeE-EEec-----cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCc
Q 001396 860 STILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 913 (1086)
Q Consensus 860 g~v~iwd~~~~-------~~~-~~l~-----~h~~~v~~l~~spdg~~l~s~s~d-------------g~i~iwd~~~~~ 913 (1086)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.++++.+.. |.|.-.+.+..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~- 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE- 174 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-
Confidence 35666666532 111 1222 132 3569999999777776542 34555555431
Q ss_pred ee-----------eeeeeeccCCCccCCCCceEEEEec-CCCEEEE--EeCCeEEEEEcCCccce---------------
Q 001396 914 IQ-----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL--VHETHLAIYEAEELTCL--------------- 964 (1086)
Q Consensus 914 ~~-----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~--~~d~~i~vwd~~~~~~~--------------- 964 (1086)
.. ...... .++. ....++|.| +|.+.++ +.++.=.|.-+..+..-
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 00 000111 1111 267899999 6666665 22222222222221110
Q ss_pred ---------eccc-----cCCccCEEEEEEeC-------CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccC
Q 001396 965 ---------KQWF-----PISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1023 (1086)
Q Consensus 965 ---------~~~~-----~~h~~~v~~l~fs~-------dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1086)
.... -.+...+..++|.. +|.++++.-..+.|...+++.+....... .+. ..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~ 321 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DR 321 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GG
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CC
Confidence 0000 01234577888864 57777777677888888888665443322 111 11
Q ss_pred cccceEEEECCCCCCEEEEEe-CCCcEEEEcc
Q 001396 1024 HVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1054 (1086)
Q Consensus 1024 ~~~~~~~~~~p~~~~~l~~~~-~dg~v~vw~~ 1054 (1086)
...+..+++.| ||.++++.. .+|. ||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g~--I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSGE--LLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTEE--EEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCCE--EEEE
Confidence 23577899999 677666543 3454 4444
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.33 E-value=0.088 Score=54.79 Aligned_cols=171 Identities=8% Similarity=0.034 Sum_probs=109.4
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE---CCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPD 401 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---spd 401 (1086)
+...---.+++|.+....++++.-..++|..||...+..... .+. ++.. -......+..|.| .|+
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~ 76 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNS 76 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSC
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCC
Confidence 333445668899886655666666789999999986654321 110 0000 0011224678999 688
Q ss_pred CCEEEEEe-------------CCCEEEEEEec---CCCccccceEecccc-----------ccEeEEEecCCCCcEEEEE
Q 001396 402 GSLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 402 g~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~v~~s~d~~~l~l~s 454 (1086)
++++++.. .+..|..+|+. +++.+... .+.... .....++..++|+ ..++
T Consensus 77 grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt 153 (334)
T 2p9w_A 77 KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVA 153 (334)
T ss_dssp CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEE
T ss_pred CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEe
Confidence 88887643 25779999999 77654321 222211 2488999999999 7888
Q ss_pred EeCC-CcEEEEeCCCCceeEEeecC------CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC
Q 001396 455 CGDD-KTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 513 (1086)
Q Consensus 455 ~~~d-~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 513 (1086)
++.- +.|...+.. |+.+..+... ....+.|+++| ++..|++....|.|..+|+...
T Consensus 154 ~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 154 FALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 8888 888888744 4433333111 12255778854 6677877766999999998853
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.25 E-value=0.011 Score=63.35 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=82.4
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 872 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 872 (1086)
....+.+|..++++.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 445677899999999999999998754444454433 23688999999 999999876 56799988873320
Q ss_pred --------EEEecc------ccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCC
Q 001396 873 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 873 --------~~~l~~------h~~~v~~l~~spd---g~~l~s~s~dg~i~iwd~~~~ 912 (1086)
...+.- ...+|..+.|+|- +..|++-..|++|++||+...
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 112221 2467999999995 468999999999999999873
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.16 E-value=0.026 Score=59.68 Aligned_cols=235 Identities=11% Similarity=-0.015 Sum_probs=119.7
Q ss_pred CCCEEEEEe-CC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCC
Q 001396 401 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 469 (1086)
Q Consensus 401 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~ 469 (1086)
++..++.|+ .+ ..+.+||..+++-.. ...+...... ..+...+++ +++.|+.+ ..+.+||..++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~--~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRY--VASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBS--CEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhcc--ccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666665 32 358889988764222 1111111111 112223455 56666654 46899998887
Q ss_pred c---eeEE--eecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEE
Q 001396 470 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 470 ~---~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
+ -... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111112222 45667777654 3578888776553332222222221222223677777
Q ss_pred EEeeCCC-CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCC
Q 001396 540 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 540 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 613 (1086)
.|+.++. ....+.+||+.+.+....-.... .......+. -++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7665332 13468999998876544321111 111122222 245566666643 46899999988765443222
Q ss_pred CCCCCCceEEEecCCCEEEEEECC-----CcEEEEECCCCC
Q 001396 614 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 649 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~ 649 (1086)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 21 12222333367777777655 357788887664
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.08 E-value=0.031 Score=59.14 Aligned_cols=195 Identities=9% Similarity=-0.052 Sum_probs=99.7
Q ss_pred CCCEEEEEeCC-----CEEEEEEecCCC---ccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCC
Q 001396 401 DGSLLGVAYSK-----HIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAV 467 (1086)
Q Consensus 401 dg~~las~~~d-----~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~ 467 (1086)
+++.++.|+.+ ..+.+||..+++ -.. ...+......-.++.+ +++ +++.|+.+ ..+.+||..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCC
Confidence 57777777654 358999988865 211 1111111111122222 455 56666643 368899988
Q ss_pred CCceeEE--eecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 468 TGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 468 ~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+=...-..........+..-+++.++.
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 212 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVV 212 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred CCeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEE
Confidence 7754322 2111111111221 45677777654 45788888765433322222222212222336677777
Q ss_pred EeeCCCC-ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeE
Q 001396 541 CGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 607 (1086)
Q Consensus 541 ~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 607 (1086)
|+.+... ...+.+||+.+.+....-.... .......+. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCC-cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 7654322 3568999998876544322111 111222222 255666666644 35788888876543
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.07 E-value=0.11 Score=54.99 Aligned_cols=236 Identities=10% Similarity=-0.060 Sum_probs=118.5
Q ss_pred eEEEEEecc--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC----CEEE
Q 001396 342 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ 415 (1086)
Q Consensus 342 ~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~ 415 (1086)
+|++.|+.+ ..+.+||..+++-..... +......-.++.+ +++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence 467777653 568888887765332100 1111111222222 67777777754 5788
Q ss_pred EEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC------CcEEEEeCCCCceeEE--eecCCcceEEEee
Q 001396 416 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYS--FEGHGAPVYSLCP 487 (1086)
Q Consensus 416 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~ 487 (1086)
+||..+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 99988764321 1111111111122222 555 56666654 4688999887754322 1111111111211
Q ss_pred cccCCccEEEEEEc---------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC-CceeEEEEeCC
Q 001396 488 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNES 557 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~~ 557 (1086)
++.+++.|+. -..+.+||..+..=...-..........+..-+++.++.|+.+.. ....+.+||+.
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 4456666654 345788888776433322222222222222236777777665332 12458999998
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 608 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~ 608 (1086)
+.+....-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+-..
T Consensus 225 ~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 225 LNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 876543321111 1122223333 55666667643 568899998876443
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.05 E-value=0.44 Score=50.53 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=57.9
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEEccCceE------------------EEEEcCCCCCeEEEEEcCCCCCEEEEEeC
Q 001396 799 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGMD 858 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 858 (1086)
...++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|. ++.+++....
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeecccc
Confidence 45789999887766553 22222222222211 12222222345678887 4556666666
Q ss_pred CCeEEEEEcCCcee----EEEeccccCCeEEEEEeCCCCEEEEEe
Q 001396 859 DSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 899 (1086)
Q Consensus 859 dg~v~iwd~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~s~s 899 (1086)
.+.|....+..+.. ...+.+..+++..|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 66777777665432 233455557899999999998777654
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.01 E-value=0.049 Score=57.75 Aligned_cols=234 Identities=8% Similarity=-0.015 Sum_probs=119.1
Q ss_pred CEEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEe-
Q 001396 403 SLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSF- 475 (1086)
Q Consensus 403 ~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~- 475 (1086)
.+++.|+. ...+.+||..+++-... ..+......-..+. -+++ +++.|+.+ ..+.+||..+++-...-
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDI-RCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEEC-CCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecC-CCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555554 34688999887653221 11111111112222 2555 56667654 57889998887543221
Q ss_pred -ecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-
Q 001396 476 -EGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG- 547 (1086)
Q Consensus 476 -~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~- 547 (1086)
.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 111111112222 45677777765 458888887765333222222222222223467777777654332
Q ss_pred ----ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCCCCCCC
Q 001396 548 ----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPE 618 (1086)
Q Consensus 548 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 618 (1086)
...+.+||+.+.+....-.... ....-..+.+ +++.++.|+.+ ..+.+||+.+.+-...-......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-- 238 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG-- 238 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB--
T ss_pred cccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc--
Confidence 3568999998876543322111 1111222222 55556665533 46899999887654432222211
Q ss_pred CceEEEecCCCEEEEEECC-----CcEEEEECCCCCe
Q 001396 619 NPRICFNKNGTLLAVIANE-----NRIKILETPESNS 650 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 650 (1086)
....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 239 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 1122222267777787743 5688888887643
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.00 E-value=0.058 Score=57.00 Aligned_cols=234 Identities=12% Similarity=0.040 Sum_probs=116.9
Q ss_pred CCEEEEEeCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCcee
Q 001396 402 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 472 (1086)
Q Consensus 402 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~~~~ 472 (1086)
+..++.|+.+ ..+.+||+.+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM--AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEEE--CCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555532 357888887764221 1111111111112222 455 56666644 35889998876533
Q ss_pred EE--eecCCcceEEEeecccCCccEEEEEEcCC-----eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 473 YS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 473 ~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
.. +.........+.+ ++.+++.|+.++ .+.+||..+.+-...-..........+..-+++.++.|+.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 22 1111111112222 456777777654 467778766543332222222111122224677777776543
Q ss_pred CC---ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 546 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 546 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
.. ...+.+||+.+.+....-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 32 3458999998876544322111 1112222222 55666666643 4689999988765544322211
Q ss_pred CCceEEEecCCCEEEEEECCC-----cEEEEECCCCC
Q 001396 618 ENPRICFNKNGTLLAVIANEN-----RIKILETPESN 649 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~ 649 (1086)
.....+..-++++++.|+.++ .+.+||..+.+
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 122223333677777777543 47888887664
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.90 E-value=0.25 Score=53.27 Aligned_cols=233 Identities=9% Similarity=-0.000 Sum_probs=118.7
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceE----eccccccEeEEEecCC---CCcEEEEEEeC------
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------ 457 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~----~~~h~~~v~~v~~s~d---~~~l~l~s~~~------ 457 (1086)
.....|+|.|||+.|.++...|.|++++... ........ ..........++|+|+ +.. +.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCC
Confidence 4567999999999444555778999998543 21111111 1122345789999996 554 3333322
Q ss_pred -CCcEEEEeCCCC--ce--eEE-eecC------CcceEEEeecccCCccEEEEEEc-------------CCeEEEEEcCC
Q 001396 458 -DKTIKVWDAVTG--SR--TYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDS 512 (1086)
Q Consensus 458 -d~~i~iwd~~~~--~~--~~~-~~~h------~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~~ 512 (1086)
...|..|++..+ +. ... +... ...-..++|. +||.+.++.+. .|.|.-++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666666533 11 111 1111 1113457774 46755555433 24566666543
Q ss_pred Cc------------eeEEecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCCCCee------------------
Q 001396 513 LG------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAI------------------ 561 (1086)
Q Consensus 513 ~~------------~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~------------------ 561 (1086)
.- ....+.........++|+| +|++.++ -...++...|.+. ..+.-
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccC
Confidence 20 1111222223577899999 5554444 3221111122221 11110
Q ss_pred -------------eeEEecccccCCceEEEEEec-------CCCEEEEEECCCcEEEEEcCCCeeEEEEcC-CCCCCCCc
Q 001396 562 -------------KRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENP 620 (1086)
Q Consensus 562 -------------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~ 620 (1086)
+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+.
T Consensus 251 ~~~~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~ 326 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIR 326 (353)
T ss_dssp TCCBSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEE
T ss_pred cccCCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCcee
Confidence 011111 13466777764 456666666777888888876654433221 11123578
Q ss_pred eEEEecCCCEEEEE
Q 001396 621 RICFNKNGTLLAVI 634 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~ 634 (1086)
.+++.|||.+.++.
T Consensus 327 ~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 327 DVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 89999999865543
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.81 E-value=0.12 Score=54.97 Aligned_cols=232 Identities=9% Similarity=-0.029 Sum_probs=115.9
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-----C------CcEEEEeCCCCceeE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 473 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-----d------~~i~iwd~~~~~~~~ 473 (1086)
++.|+ ..+.+||..+++-.. ..+.....+....+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 34444 468899998876322 22222222333333444566 5666663 1 127788988765422
Q ss_pred EeecCCcceE--EEeecccCCccEEEEEEcC--------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 474 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 474 ~~~~h~~~v~--~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+..-..+-. +++. . ++.+++.|+.+ ..+.+||..+.+=...-..+.......+...+++.++.|+.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 44566666642 35788888765432221222222222233356677777765
Q ss_pred CC--CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeEEEEcCCCCC
Q 001396 544 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 616 (1086)
Q Consensus 544 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 616 (1086)
.. .....+.+||+.+.+....-.... ......++. -+++.++.|+.++ .+.+||+.+.+-...-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 22 123468999998876543221111 111122222 2556666676544 588999988765554332222
Q ss_pred CCCceEEEecCCCEEEEEECC--------------CcEEEEECCCCCee
Q 001396 617 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV 651 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~ 651 (1086)
.....+..-++++++.|+.+ ..+.+||..+.+..
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 12222333366777777753 23677888776443
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.80 E-value=0.38 Score=53.20 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=78.6
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEEccCc------eE-------EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 797 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTF------KT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~------~~-------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
.....+.++|||+++++++ +.++.++|+... +. ..... -.-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3445788999999999998 688999998742 11 22222 334567899999 7866677778999
Q ss_pred EEEEEcCCc----------eeEEEeccccCCeEEEEE------eCCCCEEEEEe---CCCc----------EEEEECCCC
Q 001396 862 ILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGW 912 (1086)
Q Consensus 862 v~iwd~~~~----------~~~~~l~~h~~~v~~l~~------spdg~~l~s~s---~dg~----------i~iwd~~~~ 912 (1086)
|.-|++... ..+..+.-|-. +-.+.- .|||++|++.. .|+- -.+.|+...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 999999764 34556655544 223333 47999999974 4553 367787664
Q ss_pred c
Q 001396 913 G 913 (1086)
Q Consensus 913 ~ 913 (1086)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.71 E-value=0.11 Score=54.81 Aligned_cols=195 Identities=8% Similarity=-0.029 Sum_probs=96.2
Q ss_pred CCCEEEEEeCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC-----cEEEEeCCCCc
Q 001396 401 DGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-----TIKVWDAVTGS 470 (1086)
Q Consensus 401 dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~-----~i~iwd~~~~~ 470 (1086)
+++.++.|+.+ ..+.+||..+.+-.. ...+......-..+.+ +++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777777654 358889988764221 1111111111122222 455 556666443 57788988765
Q ss_pred eeEE--eecCCcceEEEeecccCCccEEEEEEcC-------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 471 RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 471 ~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+=...-..........+..-+++.++.|
T Consensus 136 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 211 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVG 211 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred EeecCCCCCcccCceEEEE----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEEC
Confidence 4322 1111111111212 44566666543 347888887654333222222111112223367777777
Q ss_pred eeCCCC-ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeE
Q 001396 542 GTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLL 607 (1086)
Q Consensus 542 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~ 607 (1086)
+.++.. ...+.+||+.+.+....-.... .......+. .++..++.|+.++ .+.+||+.+.+-.
T Consensus 212 G~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 212 GHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp CBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 654321 2468999998876543322111 111112222 2556666666443 4788888876543
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.71 E-value=0.85 Score=48.60 Aligned_cols=207 Identities=10% Similarity=0.042 Sum_probs=113.6
Q ss_pred cEEEEEECCCCCEEEEEe------------CCCEEEEEEecCCCc-cccceEecc-----ccccEeEEEecC--CCCcEE
Q 001396 392 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 451 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~~~~-----h~~~v~~v~~s~--d~~~l~ 451 (1086)
..-.++..|+|..+++++ .+|.|.++|.++... .+.+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788886666652 689999999874321 2222 2333 234666777766 454213
Q ss_pred EEEEeC--CCcEEEEeCCCCce----eEEeecC-CcceEEEeecccCCccEEEEEEc-----------------CCeEEE
Q 001396 452 VITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA 507 (1086)
Q Consensus 452 l~s~~~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~v 507 (1086)
+++-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 56788887665322 2333322 1345677774 35666655431 233444
Q ss_pred EEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-Cee--eeEEecccccCCceEEEEEec-C
Q 001396 508 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 583 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~ 583 (1086)
+| .++.. .....-...+.++|+||++.++.+.. ....|+.|++.. +.. .+.+. . ....-.+++.+ +
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 43 33222 22222235678999999998887754 256799999863 332 22331 1 25677889999 5
Q ss_pred CCEEEEEECC-CcEEEEEcC--CCeeEEEEc
Q 001396 584 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 611 (1086)
Q Consensus 584 ~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 611 (1086)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344444544 244444443
No 326
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.65 E-value=0.39 Score=51.19 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=99.2
Q ss_pred CCCeEEEEEcCC--cee-EEEecc-----ccCCeEEEEEeC--CCC-EEEEE-eC--CCcEEEEECCCCceeeeeeeecc
Q 001396 858 DDSTILIYNARS--SEV-ISKLEG-----HSKRVTGLVFSD--ALN-ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTP 923 (1086)
Q Consensus 858 ~dg~v~iwd~~~--~~~-~~~l~~-----h~~~v~~l~~sp--dg~-~l~s~-s~--dg~i~iwd~~~~~~~~~~~~~~~ 923 (1086)
.+|.|.++|..+ ++. ...+.+ .......+.+.+ ++. +|+.+ .. +.+|.+|+++.+... ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEecc
Confidence 689999999874 221 112222 234667787766 454 34444 22 567888888764322 2234444
Q ss_pred CCCccCCCCceEEEEecCCCEEEEEe----C------------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEE
Q 001396 924 DGVMTLAPSETHIQFHKDQTRFLLVH----E------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 924 ~~~~~~~~~v~~~~~s~dg~~l~~~~----d------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 987 (1086)
.+... .....+++.++|.+.++.. | ..=.||.+..++. ..+. ..-...+.++|||||+.|
T Consensus 160 ~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~~~-~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVA-EGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EEEE-EEESSEEEEEECTTSSEE
T ss_pred ccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EEee-cCCcccCcceECCCCCEE
Confidence 44322 3578999999999887742 1 1233444433332 2212 224567899999999887
Q ss_pred EEEE-CCCcEEEEEcCC-CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC
Q 001396 988 FTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1046 (1086)
Q Consensus 988 ~s~~-~Dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d 1046 (1086)
+.+. ..+.|..|++.. +.+.. .... ..+ ..+=.++.++++|++.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~-~~~~-~~~-------g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTP-LRVL-SFD-------TLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEE-EEEE-ECS-------SEEEEEEECTTTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCCCcEec-CEEE-eCC-------CCCceEEEeCCCCcEEEEecCC
Confidence 7665 467899999864 43321 1111 111 2344577777237777766544
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.58 E-value=0.026 Score=54.44 Aligned_cols=184 Identities=8% Similarity=-0.022 Sum_probs=97.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcee-----EEEeccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee----e
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 917 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~----~ 917 (1086)
...+|.+...| +|+.=...++.. ..+..++ =..+..++|+|+|.+.+. .+|.+.-.+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34566667777 666655554431 1111122 236789999999987776 66754444432211110 0
Q ss_pred eeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecccc------CCccCEEEEEEeCCCCEEEEEE
Q 001396 918 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 918 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
..+-. .+.. ...++.|.|+|.+.++ .||.|+-++-.+...-.-+.. +--..+..|.|.|+|.+.+..
T Consensus 80 t~IG~-~Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGN-GGWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEEC-SCGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEecc-cccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 11100 0111 1478999999999998 779888887644222211111 112578999999999877765
Q ss_pred CCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001396 992 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1049 (1086)
Q Consensus 992 ~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v 1049 (1086)
|+.++-+..+++.....+.....+... .-.++.. +.|.| ++.++++. +|.+
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~--g~~~yr~-l~f~~-~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQG--GWDTFKF-LFFSS-VGTLFGVQ--GGKF 203 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESS--SGGGEEE-EEECT-TSCEEEEE--TTEE
T ss_pred -CCcEEecCCCCCCCcccccccceeccC--CcceEEE-EEECC-CCcEEEEe--CCeE
Confidence 887654433332211111111111111 2223333 55888 66666665 7743
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.57 E-value=0.13 Score=63.75 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=142.6
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccc
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 879 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 879 (1086)
+.-.+|..+.+|.-.+.+++|+|+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45567888888887788899999998877776653 34566666653 44666555 56799999974 2444555545
Q ss_pred ----cCCeEEEEEeCCCCEEEEEe-------CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEe--cCCCEEE
Q 001396 880 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--KDQTRFL 946 (1086)
Q Consensus 880 ----~~~v~~l~~spdg~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~ 946 (1086)
...|..-..+++.++++..| -.|.+.+|+++.+. .+..+||.. ....+... +....|+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 35677788899999988654 24788999988633 444555553 12222221 1112233
Q ss_pred E-Ee----CCeEEEEEcCCc---cc-e-----eccccC--CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001396 947 L-VH----ETHLAIYEAEEL---TC-L-----KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 947 ~-~~----d~~i~vwd~~~~---~~-~-----~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
+ +. .+.++|.++... .. . ...++. -..-..++..|+.-..+...+.-|.|.++|+.+|.++.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 2 22 267888888543 11 1 111111 1444556777877777888888999999999999998554
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
+ -+..++... +.+. ...-++.....|.|.--.+.+.
T Consensus 297 r--------is~~~iF~~--~~~~-~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 R--------ISGETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred c--------ccCCceEEe--ccCC-CCCceEEEcCCceEEEEEEccc
Confidence 4 112333322 2233 2233444557777766666543
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.47 E-value=0.8 Score=51.11 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=63.1
Q ss_pred CeeEEEeecCCCEEEEEeC-CeEEEEEccCceE--EEEEcC------CCCCeEEEEEcCC---CCCEEEEEeC-------
Q 001396 798 AVPCFALSKNDAYLFSASG-GVISLYIVMTFKT--ILTIMP------PSPTATSLAFNPH---DNNVIAIGMD------- 858 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~--~~~~~~------~~~~i~~l~~s~~---d~~~lasg~~------- 858 (1086)
....|+|.|||+++++-.. +.|.+++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4569999999998888766 4788887655543 233322 2356779999994 3444443332
Q ss_pred -----CCeEEEEEcCCc-------eeE-EEecc-ccCCeEEEEEeCCCCEEEEEeC
Q 001396 859 -----DSTILIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGG 900 (1086)
Q Consensus 859 -----dg~v~iwd~~~~-------~~~-~~l~~-h~~~v~~l~~spdg~~l~s~s~ 900 (1086)
...|.-|+...+ +.+ ..+.. .......|+|.|||++.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235655655321 112 12322 1123688999999998888664
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.47 E-value=0.49 Score=50.05 Aligned_cols=235 Identities=7% Similarity=-0.053 Sum_probs=116.4
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-----C------
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-----K------ 411 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d------ 411 (1086)
|++.|+ ..+.+||..+++-... . +..........+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~-~-----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCA-S-----------------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEE-E-----------------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEecC-C-----------------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 556666 5788999888753210 0 1112122233344457888888873 1
Q ss_pred CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC--------CcEEEEeCCCCceeE--EeecCCcc
Q 001396 412 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTY--SFEGHGAP 481 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d--------~~i~iwd~~~~~~~~--~~~~h~~~ 481 (1086)
..+.+||..+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-.. .+......
T Consensus 67 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 127788887764211 1111111111112222 444 55556532 458899988765322 11111111
Q ss_pred eEEEeecccCCccEEEEEEc-C-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-ceeEEEE
Q 001396 482 VYSLCPHAKENIHFIFSISV-D-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEW 554 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-~~~i~iw 554 (1086)
-..+.+ ++.+++.|+. + ..+.+||..+.+=...-..........+..-+++.++.|+.+..+ ...+.+|
T Consensus 142 ~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 142 HTVLSH----MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp CEEEEE----TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEE
T ss_pred eeEEEE----CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEE
Confidence 111211 4456777765 2 458888887654322222222222122223367777777754321 2468899
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC--------------CcEEEEEcCCCeeEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------------g~i~iwd~~~~~~~~~ 609 (1086)
|+.+.+....-.... .......+. -+++.++.|+.+ ..+.+||+.+.+-...
T Consensus 218 d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 218 SITDNKWAPFEAFPQ-ERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp ETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ECCCCeEEECCCCCC-cccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 998876544322111 111222222 255666666643 2377888888765554
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.39 E-value=0.13 Score=54.39 Aligned_cols=238 Identities=11% Similarity=0.026 Sum_probs=122.7
Q ss_pred EeecCCCEEEEEe-C----CeEEEEEccCceEEEEEcCCCCCe-EEEEEcCCCCCEEEEEeC----C-----CeEEEEEc
Q 001396 803 ALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMD----D-----STILIYNA 867 (1086)
Q Consensus 803 ~~s~dg~~l~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~lasg~~----d-----g~v~iwd~ 867 (1086)
+..-++..++.|+ + ..+.+||..+.+-...-....... .+++.. ++++++.|+. + ..+.+||.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 3344566666665 1 458999988765332211111111 122222 5677777775 2 36889998
Q ss_pred CCceeE--EEeccccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 868 RSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 868 ~~~~~~--~~l~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.+.+-. ..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+ +.. .....+..-
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~------r~~~~~~~~ 167 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTR------RIGVGVAVL 167 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSC------CBSCEEEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccc------ccceEEEEE
Confidence 876532 222221122222222 67777777643 3588899887653322111 111 111122223
Q ss_pred CCCEEEEE-eC-----CeEEEEEcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECC-----CcEEEEEcCCCceee
Q 001396 941 DQTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQC 1008 (1086)
Q Consensus 941 dg~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~D-----g~v~vWd~~~~~~~~ 1008 (1086)
++++++.+ .+ +.+.+||..+.+....-.... ......+. -+++.++.||.+ ..+.+||+.+.+...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 66666663 22 468999988765432211111 11112222 277788888765 458999998876542
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEccCCCCCCCCCCCcc
Q 001396 1009 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1067 (1086)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~p~ 1067 (1086)
.- .++.. -...+++.. ++.+++.|+.++ .|.++|+. ..+|...++.
T Consensus 246 ~~----~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 296 (308)
T 1zgk_A 246 VA----PMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM 296 (308)
T ss_dssp CC----CCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred CC----CCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence 21 12221 111122222 467888887653 56677774 4568765443
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.37 E-value=0.12 Score=54.77 Aligned_cols=238 Identities=6% Similarity=-0.052 Sum_probs=117.7
Q ss_pred CCCCCEEEEEeCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC----C-----CcEEEEe
Q 001396 399 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD 465 (1086)
Q Consensus 399 spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~----d-----~~i~iwd 465 (1086)
.-++..++.|+.+ ..+.+||..+++-... ..+......- +++. -+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3356777777632 3588999887643221 1111111111 1222 2444 5565654 2 4688999
Q ss_pred CCCCceeEE--eecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEE
Q 001396 466 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 466 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 538 (1086)
..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 887653221 1111111122222 45566666643 357788877654332212121111111222366777
Q ss_pred EEEeeCCCC-ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcC
Q 001396 539 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 539 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~ 612 (1086)
+.|+.++.. ...+.+||+.+.+....-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 776654322 3568999998776543221111 1112222222 55566666643 5699999988765543222
Q ss_pred CCCCCCCceEEEecCCCEEEEEECC-----CcEEEEECCCCCe
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 650 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 650 (1086)
... .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 211 11222222367777777643 4577888876643
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.18 E-value=0.45 Score=50.47 Aligned_cols=227 Identities=10% Similarity=0.005 Sum_probs=111.0
Q ss_pred EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC----CC-------cEEEEeCCCCceeEE--eecCC
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 479 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~----d~-------~i~iwd~~~~~~~~~--~~~h~ 479 (1086)
.+.+||..+++-.. ..+.....+....+...+++ +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988775332 12221122222333344555 5666662 11 177888877654321 11111
Q ss_pred cceEEEeecccCCccEEEEEEcC-------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC--Ccee
Q 001396 480 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 550 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~ 550 (1086)
.....+.+ ++.+++.|+.+ ..+.+||..+.+=...-..........+...+++.++.|+.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111222 45677777754 24677777665433322222222222223356777777764221 1345
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
+.+||+.+.+....-.... .......+ . -+++.++.|+.+ ..+.+||+.+.+-...-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVA-I-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEE-E-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEE-E-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543322111 11112222 2 245666666543 3477899888765443222211 12222333
Q ss_pred cCCCEEEEEECC--------------CcEEEEECCCCCeee
Q 001396 626 KNGTLLAVIANE--------------NRIKILETPESNSVD 652 (1086)
Q Consensus 626 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~ 652 (1086)
-++++++.|+.+ ..+.+||..+.+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 456777776643 357788887764443
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.15 E-value=0.42 Score=51.25 Aligned_cols=156 Identities=11% Similarity=0.003 Sum_probs=95.2
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccC-CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCcccee--
Q 001396 889 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-- 965 (1086)
Q Consensus 889 spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-- 965 (1086)
+.+|..++.+- ++.||.-++.... .-+.+.... -.. ..+..+..||+|++||..++..|.|..+..+....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~~~~~i~f---~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLNFSRHLVL---DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS--SCEEEECTTTCCC---CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC--cceEEecCccccc---CceeEEEECCCCCEEEEecCCeEEEEEecCccccCcc
Confidence 34555555543 4667766776432 223333332 011 24788999999999999999999999998432111
Q ss_pred ----------ccccC-----CccCEEEEEEeC---CCCEEEEEECCCcEEEEEcCCCceeee-eccc-cccCCCCccCcc
Q 001396 966 ----------QWFPI-----SSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLEVQCR-ILST-AYLRPTTSCLHV 1025 (1086)
Q Consensus 966 ----------~~~~~-----h~~~v~~l~fs~---dg~~l~s~~~Dg~v~vWd~~~~~~~~~-~~~~-~~~~~~~~~~~~ 1025 (1086)
.+..+ ...+|..+.|.| .|..|++-..|++|++||+........ +... ..+... ....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d--~~~~ 180 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLD--ARVN 180 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESC--SSCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCC--cccc
Confidence 11111 257899999998 456899999999999999987432111 1100 001111 1113
Q ss_pred cceEEEECCCCCCEEEEEe--CCCcEEEEc
Q 001396 1026 YPHAIAAHPLKPTQFAVGL--TNGEVYVIE 1053 (1086)
Q Consensus 1026 ~~~~~~~~p~~~~~l~~~~--~dg~v~vw~ 1053 (1086)
...+++|.+ ++-.|.+.. ..|.|+-.-
T Consensus 181 ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 181 DITDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred eEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 345788887 666677755 778877543
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.12 E-value=0.76 Score=48.66 Aligned_cols=235 Identities=9% Similarity=0.005 Sum_probs=111.5
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC----CC------
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KH------ 412 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----d~------ 412 (1086)
+++.|+. .+..||..+++-... . +..........+...+++.++.|+. ++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-~-----------------~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-A-----------------LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-E-----------------ECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred hhhcccc--ceEEECCCCCceecc-c-----------------CCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 5666653 378888887653220 0 1111112223334567888888873 12
Q ss_pred -EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-------CcEEEEeCCCCceeEEeecCCcceE-
Q 001396 413 -IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-------KTIKVWDAVTGSRTYSFEGHGAPVY- 483 (1086)
Q Consensus 413 -~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-------~~i~iwd~~~~~~~~~~~~h~~~v~- 483 (1086)
.+.+||..+++-... ..+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-...-. ...+..
T Consensus 78 ~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~ 151 (318)
T 2woz_A 78 SYFFQLDNVSSEWVGL-PPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYG 151 (318)
T ss_dssp BEEEEEETTTTEEEEC-SCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEES
T ss_pred ccEEEEeCCCCcEEEC-CCCCccccccceEEE--CCE--EEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccc
Confidence 277788776543211 111111111112222 444 55556543 357888988765432211 111111
Q ss_pred -EEeecccCCccEEEEEEc------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-ceeEEEEe
Q 001396 484 -SLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWN 555 (1086)
Q Consensus 484 -~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-~~~i~iwd 555 (1086)
+++. -++.+++.|+. -..+.+||..+.+=...-..........+..-+++.++.|+.+..+ ...+.+||
T Consensus 152 ~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 152 HNVIS---HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp CEEEE---ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEE
T ss_pred cEEEE---ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEE
Confidence 1111 14556666654 2358888887754333222222111111222467777777654321 24678999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC--------------CcEEEEEcCCCeeEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------------g~i~iwd~~~~~~~~~ 609 (1086)
+.+.+....-.... ..... +++ ..++..++.|+.+ ..+.+||+.+.+-...
T Consensus 229 ~~~~~W~~~~~~p~-~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 229 LKTNKWEVMTEFPQ-ERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp TTTCCEEECCCCSS-CCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCCCeEEECCCCCC-cccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 88776443221111 11111 222 2245555666543 3477778777665444
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.06 E-value=1.9 Score=45.69 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=70.0
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+.++...-...+.++|.|||+ ++++-...|.|++++..+++......+. .+..........|+|
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------------~v~~~g~~GllGia~ 87 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------------GVSPSGEGGLLGIAL 87 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------------TCCCBTTBSEEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------------ceeecCCCCceeeEe
Confidence 34445555555889999999997 5666554799999987666542110000 012234567889999
Q ss_pred CCC---CCEEEEE-e--CCCEEEEEEecCCC----cc---ccce-Eec-cccccEeEEEecCCCCcEEEEEEe
Q 001396 399 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 456 (1086)
Q Consensus 399 spd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~~-~~~-~h~~~v~~v~~s~d~~~l~l~s~~ 456 (1086)
+|| +.+|... + .++.|.-|.+..+. .+ +.+. .+. +....-..++|.|||. ++++.+
T Consensus 88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 996 3444433 2 34556667666521 11 1111 121 1112346799999997 555543
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.00 E-value=0.25 Score=61.29 Aligned_cols=238 Identities=12% Similarity=0.123 Sum_probs=139.5
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCE
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 413 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 413 (1086)
.-.+|..+ ++|.-. ..++.|+|+++...++.+.+ ..+|..=.|-.+. .|+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCC-eeEEEc-CCe
Confidence 34567766 566654 58899999999887765332 2467777776444 444443 345
Q ss_pred EEEEEecCCCccccceEeccc----cccEeEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 414 VQLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 414 i~iwd~~~~~~~~~~~~~~~h----~~~v~~v~~s~d~~~l~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
|+-|++.+...... .+..| ...|..-.-+++.+++ +++|= -.|.+.+|..+.+. .+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhh
Confidence 99999975432221 23333 3467777889999963 33332 35788899866543 456677777665
Q ss_pred EEeecccCCccEEEEEEc----CCeEEEEEcCCC---ceeEE------ecCC---CCceEEEEEecCCCEEEEEeeCCCC
Q 001396 484 SLCPHAKENIHFIFSISV----DGKIKAWLYDSL---GARVD------YDAP---GLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~---~~~~~------~~~~---~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+.....+....|++-.. .+.+++-++... ..... +..+ ..-..++..++.-..+...+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---- 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence 555433222223333222 268888888543 11110 1111 122345666776666666654
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
.|.++++|+.||.++..-+-.. ..|...+......-+++....|.|.--.+.....
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred CceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 6789999999998876555433 4555554444444455555666655555554443
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.84 E-value=0.087 Score=50.86 Aligned_cols=145 Identities=9% Similarity=0.010 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------EEEe--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001396 839 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l--~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 910 (1086)
.++.++|+| ++.+.++ .+|.++-.+..+++. -..+ .+... -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 566999999 8988877 677777766654211 1111 01222 478999999998888 56877766643
Q ss_pred CCceeeeee--eeccC-CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceec-----c-ccCCccCEEEEEEe
Q 001396 911 GWGIQTCRS--LQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-----W-FPISSVPISQATFS 981 (1086)
Q Consensus 911 ~~~~~~~~~--~~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~-----~-~~~h~~~v~~l~fs 981 (1086)
+.......- ..... +-. .+..+.|.|+|.+-++. ++.++-....++....- . -.+.-..-.-+.|+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~----~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS----GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG----GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred cCCCCceeccccEeccCCCC----ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 222111100 01111 111 47899999999999999 88865444443221111 0 11223344557788
Q ss_pred CCCCEEEEEECCCcE
Q 001396 982 CDCRMVFTSFVDGTL 996 (1086)
Q Consensus 982 ~dg~~l~s~~~Dg~v 996 (1086)
++|...++. +|.+
T Consensus 191 ~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKF 203 (236)
T ss_dssp TTSCEEEEE--TTEE
T ss_pred CCCcEEEEe--CCeE
Confidence 888776655 6633
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.08 Score=55.94 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=107.0
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEEEeccc-cCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEECCCCceeeeeeeeccCC
Q 001396 851 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 925 (1086)
Q Consensus 851 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~v~~l~~--sp-dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~ 925 (1086)
.++++++.||.|.-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|.......+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888999999999999999999888754 122222110 01 23334333 589999999988775432111111111
Q ss_pred CccCCCCceEEEE------------ecCCCEEEEEeCCeEEEEEcCCccceeccccCCccC------EEEEEEe-----C
Q 001396 926 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C 982 (1086)
Q Consensus 926 ~~~~~~~v~~~~~------------s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~ 982 (1086)
..-+.. +.+|..++.+.++++...|+.+|+.+-++..+.... ..+.... .
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 011221 234444444789999999999999987755432111 0111110 1
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCC
Q 001396 983 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1061 (1086)
Q Consensus 983 dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~ 1061 (1086)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+.... ..+. .....+. |+.. ++++.||.|.-.|.......|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-cccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 235677777777777777 4564 433332222222200 0000 0000011 3444 557888888888877666677
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.60 E-value=0.6 Score=50.48 Aligned_cols=148 Identities=9% Similarity=0.023 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCceeEEecCCC-Cce-EEEEEecCCCEEEEEeeCCCC--ceeEEEEeC--CCCeeeeEEecccccCCceE
Q 001396 503 GKIKAWLYDSLGARVDYDAPG-LGC-TRMAYSANGRRLFSCGTSKEG--ESFLVEWNE--SEGAIKRTYQGLQLQHNSVS 576 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~-~~i-~~~~~s~d~~~l~~~~~~~~~--~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~ 576 (1086)
..+.+||..+.+=...-.... ... .+++. -+++.++.|+.++.+ ...+..||+ .+.+.... ...........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~-~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-APVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEEC-CCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec-CCCCCCccccc
Confidence 578888887654333222221 111 22232 366666666643221 234677776 44433222 11110011112
Q ss_pred EEEEecCCCEEEEEECC----------------------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001396 577 VVHFDTAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 634 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 634 (1086)
..+...++..++.|+.+ ..+.+||+.+.+-...-..... .....+...++++++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence 11223355566666522 2578899987665443332222 22234444578888888
Q ss_pred ECCC------cEEEEECCCCCeeeec
Q 001396 635 ANEN------RIKILETPESNSVDAA 654 (1086)
Q Consensus 635 ~~dg------~i~iw~~~~~~~~~~~ 654 (1086)
+.++ .+.++++++++.+...
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 8643 3566688777665443
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.53 E-value=0.63 Score=50.30 Aligned_cols=242 Identities=11% Similarity=0.043 Sum_probs=115.6
Q ss_pred cCCCEEEEEe--CCeEEEEEccC----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC-C---------CeEEEEEcCC
Q 001396 806 KNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS 869 (1086)
Q Consensus 806 ~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~~ 869 (1086)
-+++.++.|+ ...+.+||..+ ++.+..+......-.+++.. ++++++.|+. + ..+.+||..+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3677777775 36799999863 23322222111111223332 5677777775 2 3688999987
Q ss_pred ceeE--EEeccccCCeEEEEEeCCCCEEEEEeCC---------------------------------------CcEEEEE
Q 001396 870 SEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVWD 908 (1086)
Q Consensus 870 ~~~~--~~l~~h~~~v~~l~~spdg~~l~s~s~d---------------------------------------g~i~iwd 908 (1086)
.+-. ..+.. .......+...++++++.|+.+ ..+.+||
T Consensus 96 ~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCCS-SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCCC-cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 6432 22220 1111111222577888888865 4688999
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-e------CCeEEEEEc--CCccceecc-ccCCccCEEEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPISQA 978 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~------d~~i~vwd~--~~~~~~~~~-~~~h~~~v~~l 978 (1086)
..+.+-.. +....... .-...+..-++++++.+ . ...+.+||+ .+.+....- ...........
T Consensus 175 ~~~~~W~~---~~~~p~~~----~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSY---AGESPWYG----TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEE---EEECSSCC----CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEE---CCCCCCCC----cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 88765333 22111100 11022223356666653 2 235777876 443322210 11111111222
Q ss_pred EEeCCCCEEEEEECC----------------------CcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 979 TFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 979 ~fs~dg~~l~s~~~D----------------------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
+...++++++.||.+ ..+.+||+.+.+....- .++.. .....++.. +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~----r~~~~~~~~---~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQG----RAYGVSLPW---N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSC----CBSSEEEEE---T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCC----cccceeEEe---C
Confidence 334477777777742 25788998877655321 22222 111122333 4
Q ss_pred CCEEEEEeCCCc----EEEEccCCCCCCCCCCCccc
Q 001396 1037 PTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDE 1068 (1086)
Q Consensus 1037 ~~~l~~~~~dg~----v~vw~~~~~~~~~~~~~p~~ 1068 (1086)
+.+++.|+.++. =-+|-+.-...+|....|.+
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 688889997641 13443333456677666655
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.37 E-value=2.9 Score=43.45 Aligned_cols=183 Identities=10% Similarity=0.065 Sum_probs=101.2
Q ss_pred EeeecCCCceEEEEEecc-------------CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 333 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+--++++|+++..+...+ ..|+..++..++... +.. .. +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 445689999866665543 356666666654322 111 11 23678
Q ss_pred CCCCEEEEEe--C--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 400 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 400 pdg~~las~~--~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+++++|+... . +..|+.-++.+.. .+ .+..+.. .+|+++++.+ ..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~i-y~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRYF-YYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTEE-EEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCEE-EEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 2 3455556665433 22 2333332 4678899853 334334678888887766544333
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcC--CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+ ... ..++| ++.+|+-.... ..|..-+++...... +.. ..+ ..|+|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 22333 44566555433 355555555544332 221 222 34889999998764322 357888
Q ss_pred EeCCCCee
Q 001396 554 WNESEGAI 561 (1086)
Q Consensus 554 wd~~~~~~ 561 (1086)
.++.....
T Consensus 251 ~~~DG~~r 258 (302)
T 3s25_A 251 VKNDGTGF 258 (302)
T ss_dssp EETTSCCC
T ss_pred EECCCCcc
Confidence 88765443
No 343
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=95.31 E-value=0.008 Score=53.79 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=71.3
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccc----cCC--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKY----YGD--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~----~~~--~~~~r~~l~ 139 (1086)
++|.|+-|.||||+..|..++|..+|.+--..+... .+.+++|..+....++.+++....+ +.. ...+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 899999999999999999999999999866555555 8888999888888777766543332 111 377888999
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhhh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQH 178 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~ 178 (1086)
..|++.= -.-|..+|++.+..++
T Consensus 112 ~fL~~~~----------------~~~ll~Iin~~i~i~v 134 (138)
T 2j4b_A 112 NFLEERN----------------LTYILKILNQHLDIKV 134 (138)
T ss_dssp HHHHHTT----------------CHHHHHHHHHHEEEEE
T ss_pred HHHHHCC----------------ChHHHHHHHHheeeEe
Confidence 9998741 1257778887765543
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.15 E-value=1.1 Score=49.93 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=64.1
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc--cCCCCceEEEEecC---CCEEEE--Ee---
Q 001396 880 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLL--VH--- 949 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d---g~~l~~--~~--- 949 (1086)
-...+.|+|.|||+++++-...+.|++++..++.... ......... .....+..|+|+|| +.+|.+ +.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457899999999988875544568888765544322 111111110 01235779999996 555544 22
Q ss_pred ---------CCeEEEEEcCCc-------cceec-cccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 950 ---------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 950 ---------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666655422 11111 11222345789999999988777654
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.97 E-value=4.1 Score=42.36 Aligned_cols=180 Identities=9% Similarity=0.108 Sum_probs=102.8
Q ss_pred EEECCCCCEEEEEeCC--------------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE--eCCC
Q 001396 396 VVWSPDGSLLGVAYSK--------------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDK 459 (1086)
Q Consensus 396 l~~spdg~~las~~~d--------------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~--~~d~ 459 (1086)
--++++|.+|+.+... ..|+..++.+++... +... ....|+++++.++++.. ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCc
Confidence 3457889998887543 467777777765222 2221 12367889985433331 2344
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 538 (1086)
.|..-++. |.....+..+.. ..+.+ +++.|+-.+. ...|.+-++........+.. ... ..++|++.+|
T Consensus 130 ~Iy~~~~d-Gs~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~i 198 (302)
T 3s25_A 130 SLYRIRID-GEEKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNV 198 (302)
T ss_dssp EEEEEETT-SCCCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEE
T ss_pred eEEEEECC-CCCeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEE
Confidence 56666765 444455544433 23433 4445554444 67788888776655544332 222 3466999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC--CCcEEEEEcCCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKV 604 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~ 604 (1086)
+...... ...|..-++..+.. ..+.. ..+ ..|+|++.+|+.++. .+.|..-++...
T Consensus 199 y~t~~~~--~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 199 YYMDVNR--DNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEGGG--TTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEcCC--CcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 8765422 24688888776553 33322 223 347888988887643 355666666543
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.07 Score=56.39 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=104.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecC-CcceEEEeeccc-CCccEEEEE-EcCCeEEEEEcCCCceeEEecCC----C
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAK-ENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 523 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~----~ 523 (1086)
.++.++.||.|.-.|.++|+.+.+++.. ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788899999999999999999988654 123322211111 133334343 68999999998776554433221 1
Q ss_pred CceEE---EEE-e----cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCc-----eEEEEEe-----cCCC
Q 001396 524 LGCTR---MAY-S----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 585 (1086)
Q Consensus 524 ~~i~~---~~~-s----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 585 (1086)
.++.. ..+ . ..+..+++++. ++.++..|..+|+.+..+..... ... ..+.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCB-CC--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCC-cccccccccccccccccccccCCC
Confidence 11110 000 0 14556677765 78899999999999988875320 010 0011110 1234
Q ss_pred EEEEEECCCcEEEEEcCCCeeEEEE-----cCCCCCCCC-ceEEEecCCCEEEEEECCCcEEEEECCCCCeee
Q 001396 586 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
.++.+..+..+.+.+ ++|+ ...+ ........+ .....+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 666666666666655 3342 1111 000000000 00011234555 557889999999988887665
No 347
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=94.88 E-value=0.028 Score=51.68 Aligned_cols=95 Identities=9% Similarity=0.164 Sum_probs=69.9
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccC----C--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYG----D--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~--~~~~r~~l~ 139 (1086)
++|.|+-|.|||||..|..++|..+|++--..++....+.+++|..+....++.+++....+.. . ...+-..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 8999999999999999999999999997554444445778889988888777766654443221 1 267788888
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNW 176 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~ 176 (1086)
..|++.= -.-|..+|++.+..
T Consensus 132 ~fL~~~~----------------~~~ll~Iin~~i~i 152 (156)
T 2nxp_A 132 RHLQEKQ----------------NNQIWNIVQEHLYI 152 (156)
T ss_dssp HHHTTST----------------TCHHHHHHHHTCEE
T ss_pred HHHHHcC----------------ChHHHHHHHHheee
Confidence 8888731 12577777776544
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.17 E-value=6.3 Score=43.84 Aligned_cols=194 Identities=12% Similarity=0.111 Sum_probs=114.9
Q ss_pred CCCEEEEEe--CCeEEEEEccCceEEEEEcC-CCCCeEEEEEc--CCCCCEEEEEeC-------CCeE---------EE-
Q 001396 807 NDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI- 864 (1086)
Q Consensus 807 dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--~~d~~~lasg~~-------dg~v---------~i- 864 (1086)
||+||..-. +..|...++...++-..+.- ....+..+.|- | +..+++.+++ ||.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 789998887 47788889998888766554 34578888886 6 5667776654 2221 11
Q ss_pred --EEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEECCC-------Cceeeee--
Q 001396 865 --YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR-- 918 (1086)
Q Consensus 865 --wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg---------------~i~iwd~~~-------~~~~~~~-- 918 (1086)
.|..+.+...++.- .+....+...++|++.++.+... -+.++++.. ++.....
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 12222222222211 12333455677888888766532 255665421 1111100
Q ss_pred eeeccCCCc------------cCCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccc-------------eeccccCC
Q 001396 919 SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPIS 971 (1086)
Q Consensus 919 ~~~~~~~~~------------~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~-------------~~~~~~~h 971 (1086)
-+...++.. ........+.++|||++++++ -+.++.|+|++.... ..+.. -
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--L 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--C
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--C
Confidence 011111110 011345679999999999995 567899999985321 11111 2
Q ss_pred ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 972 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 972 ~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
.......+|.++|....|-.-|..|.-|++...
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 456788899999955556668999999999864
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.07 E-value=13 Score=41.20 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.7
Q ss_pred ccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEec---------cccccEeEEEecCC
Q 001396 391 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 446 (1086)
Q Consensus 391 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~v~~s~d 446 (1086)
.....|+|.|||. .|+++...|.|++++............+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999996 55566788999999754321111111111 11456789999997
No 350
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=91.96 E-value=0.019 Score=51.92 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccc----cC--CChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKY----YG--DALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~----~~--~~~~~r~~l~ 139 (1086)
++|.|+-|.||||+..| .++|..||.+.-..+.....+.+++|..+....++.+++....+ |. ....+-..|+
T Consensus 35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~ 113 (148)
T 2j49_A 35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL 113 (148)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 89999999999999999 99999999875443322234556666666666665555433322 11 1377888888
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhhhh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHV 179 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~ 179 (1086)
..|++.=.. =.+-|..+|++.+..++.
T Consensus 114 ~fL~~~~~~-------------gg~~ll~Iin~~i~i~v~ 140 (148)
T 2j49_A 114 YFLNENESI-------------GGSLIISVINQHLDPNIV 140 (148)
T ss_dssp HHHHHTGGG-------------THHHHHHHHHHHEEEEEC
T ss_pred HHHHHcCcc-------------cHHHHHHHHHHheeEeee
Confidence 888873110 122578888887766544
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.88 E-value=24 Score=41.51 Aligned_cols=240 Identities=8% Similarity=0.008 Sum_probs=122.6
Q ss_pred ecCCCceEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-----ccEEEEEECCCCCEEE
Q 001396 336 FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 336 ~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~la 406 (1086)
++||+++++++-|..| .|+++|+.+++.+.. .+. .. ... .....++|-.++..++
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d~~~~~~ 200 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWINKDTIIF 200 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEETTEEEE
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEECCCEEEE
Confidence 8999998666655544 599999999987642 110 00 000 0112346653333333
Q ss_pred EE----------eCCCEEEEEEecCCCccccceEeccccccE-eEEEecCCCCcE---EEEEEeCC---CcEEEEeCCC-
Q 001396 407 VA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVWDAVT- 468 (1086)
Q Consensus 407 s~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~v~~s~d~~~l---~l~s~~~d---~~i~iwd~~~- 468 (1086)
+. +....|+.|.+.+...-.. ..+.+....+ .....+++++.. .+++.+.+ ..+.+.|...
T Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 279 (711)
T 4hvt_A 201 NLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK 279 (711)
T ss_dssp CCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred EeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence 21 1224688888876532211 1344433332 345567777742 35554422 3456666553
Q ss_pred -CceeEEeecCCcceEEEeecccCCccEEEEE----------EcCCeEEEEEcCCCc-------eeEE-e-cCCCCceEE
Q 001396 469 -GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSLG-------ARVD-Y-DAPGLGCTR 528 (1086)
Q Consensus 469 -~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~-------~~~~-~-~~~~~~i~~ 528 (1086)
++ +..+....... +.. ..++.+++.. ...+.|...++.... .... + ......+..
T Consensus 280 ~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 280 NLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF 354 (711)
T ss_dssp SCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred CCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence 33 22222111111 111 1133444422 246778889887642 1222 2 233446777
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeE-EecccccCCceEEEEEecCCCEEEE-EE---CCCcEEEEEcC
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKIWDMN 602 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~iwd~~ 602 (1086)
+.+..+ ..+++... ++...+.++|+.++. .... +.... .+.+......+++..++. .+ .-+.++.+|+.
T Consensus 355 ~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 355 ISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 888765 44444433 446678999987775 2333 32221 145666666677655444 33 34668888876
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.77 E-value=5.6 Score=47.19 Aligned_cols=196 Identities=10% Similarity=0.118 Sum_probs=105.9
Q ss_pred cCCCEEEEEeC-----CeEEEEEccCceEEEEE-c-------CCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001396 806 KNDAYLFSASG-----GVISLYIVMTFKTILTI-M-------PPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 866 (1086)
Q Consensus 806 ~dg~~l~~~~d-----g~i~iwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd 866 (1086)
.++..++.|+. ..+.+||..+.+-...- . .....-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56677777652 35889998765433222 1 1112234445543 566888877543 588899
Q ss_pred cCCcee--EEEeccccCCeEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC-
Q 001396 867 ARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD- 941 (1086)
Q Consensus 867 ~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 941 (1086)
..+.+- +..+...... .+++...++++++.||.++ .+.+||..+..-.. +............-.++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~---~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD---VTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE---CCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE---ccCCCCCCCcccceeEEEEeCCC
Confidence 887542 2222211111 1223324888999888755 68999998865322 2210000000011234666666
Q ss_pred CCEEEEE-e--C-----CeEEEEEcCCccc-----eecccc---CCccCEEEEEEeCCCCEEEEEECC--------CcEE
Q 001396 942 QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP---ISSVPISQATFSCDCRMVFTSFVD--------GTLS 997 (1086)
Q Consensus 942 g~~l~~~-~--d-----~~i~vwd~~~~~~-----~~~~~~---~h~~~v~~l~fs~dg~~l~s~~~D--------g~v~ 997 (1086)
+++++.| . + +.+.+||+.+... ...+.. ...... +++...++++++.||.+ ..|.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5555554 2 2 3588999987762 111110 001111 22333347888888753 4599
Q ss_pred EEEcCCCcee
Q 001396 998 IHEASNLEVQ 1007 (1086)
Q Consensus 998 vWd~~~~~~~ 1007 (1086)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988776
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.99 E-value=15 Score=37.61 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=109.1
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|..++..... .++. . ||.|..|-.....++.. + ......|..++...+-. +|. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p------------------~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-P------------------AATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-C------------------GGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-C------------------ccCCCCEEEEEeCCCEE-EEE-E
Confidence 45556555443 2444 4 78888887655433321 0 00123566777654433 333 4
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
||.|+.|-.....++.... .-...|..++...+- .+.-. ||.|..|-......+-.-......|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 8999999876543332111 113467777776543 23334 8999999755422221111123456666542
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
....++ -. ||.|..|-................|..++...+... +. . ++.|+.|-......+..-...
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~--al-~----~G~v~~wG~n~~gqlg~p~~~- 217 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL--AL-K----DGKVIAWGDNRYKQTTVPTEA- 217 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE--EE-E----TTEEEEEECCTTSTTCCCGGG-
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE--EE-E----CCeEEEEECCCCCCCCCCccc-
Confidence 222333 34 799999965543322111111234555554333222 22 2 556888864432111110011
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
...|..++.... +.++.. ||.|+.|-...
T Consensus 218 --~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 --LSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp --GSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred --CCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 135666665543 333333 88888886554
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.84 E-value=9.7 Score=39.02 Aligned_cols=224 Identities=11% Similarity=0.042 Sum_probs=114.6
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
.|..++...... ++.. +|.+..|-......+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 455666544322 3333 78888886543211111011223677777754 334444 5 9999999765422111111
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEE
Q 001396 878 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 957 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd 957 (1086)
.-...|..++...+.. +... ||.|+.|-.....+.. +... .. ..|..++...+...+ .. ++.++.|-
T Consensus 99 ~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg---~~~~--~~---~~i~~i~~G~~~~~~-l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTT---VPAE--AQ---SGVTALDGGVYTALA-VK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTS---CCGG--GG---SSEEEEEECSSEEEE-EE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCC---CCcc--CC---CCeEEEEcccCEEEE-EE-CCEEEEec
Confidence 1134688887775533 3334 9999999876522111 0100 01 235555544433322 24 89999997
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1037 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1037 (1086)
......+.. ...-...|..++...+-.. +. .||.|+.|-....-.+.. |.. ... ....++.-. .
T Consensus 166 ~n~~gqlg~-p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~-------p~~-~~~--~v~~i~~G~--~ 229 (282)
T 3qhy_B 166 DNYFGQTTV-PAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTV-------PTE-ALS--GVSAIASGE--W 229 (282)
T ss_dssp CCTTSTTSC-CGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCC-------CGG-GGS--SCCEEEECS--S
T ss_pred CCCCCCCCC-ceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCC-------Ccc-cCC--CceEEEcCC--C
Confidence 654322221 1111456877776554433 33 599999997654322211 100 011 123454442 2
Q ss_pred CEEEEEeCCCcEEEEccCCCC
Q 001396 1038 TQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1038 ~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
..++.. ||.|+.|.-....
T Consensus 230 h~~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp CEEEEE--TTEEEEESTTCCC
T ss_pred EEEEEE--CCEEEEecCCCCc
Confidence 444444 9999999987655
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.78 E-value=8.7 Score=45.53 Aligned_cols=200 Identities=13% Similarity=0.061 Sum_probs=101.8
Q ss_pred CCCCcEEEEEEeCC----CcEEEEeCCCCceeEEe-e-----cCCcce-EEEeecccCCccEEEEEEcCC------eEEE
Q 001396 445 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAPV-YSLCPHAKENIHFIFSISVDG------KIKA 507 (1086)
Q Consensus 445 ~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~-~-----~h~~~v-~~~~~~~~~~~~~l~s~s~dg------~i~v 507 (1086)
.++. +++.||.+ ..+.+||..+++-...- . ...... .+++.. ..++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence 3455 56666643 45888888877543322 1 011111 112211 11455777776543 4677
Q ss_pred EEcCCCceeEEecCCCCce-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec--ccccCCceEEEEEecC-
Q 001396 508 WLYDSLGARVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA- 583 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~- 583 (1086)
||..+.+=...-....... .+++...+++.++.|+.+..+ .+.+||..+......-.. .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 7776643222211111111 223333488888888765543 799999988765433220 1101122334555655
Q ss_pred CCEEEEEEC--C-----CcEEEEEcCCCe------eEEEEcC-CCCCCCCceEEEecCCCEEEEEEC--------CCcEE
Q 001396 584 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDA-GGGLPENPRICFNKNGTLLAVIAN--------ENRIK 641 (1086)
Q Consensus 584 ~~~l~~~s~--d-----g~i~iwd~~~~~------~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~--------dg~i~ 641 (1086)
+..++.|+. + ..+.+||+.+.. ....... .... .-.+++...++++++.|+. ...+.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 555556654 2 458899998877 2222111 1111 1123333343777777764 34588
Q ss_pred EEECCCCCe
Q 001396 642 ILETPESNS 650 (1086)
Q Consensus 642 iw~~~~~~~ 650 (1086)
+||..+.+.
T Consensus 630 ~yd~~t~~W 638 (695)
T 2zwa_A 630 SLDPLSETL 638 (695)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCeE
Confidence 888877643
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.57 E-value=15 Score=43.34 Aligned_cols=239 Identities=9% Similarity=0.005 Sum_probs=119.2
Q ss_pred ECCCCCEEEEE-eC----CCEEEEEEecCCCccccceEec-cccc------cEeEEEecCCCCcEEEEEE----------
Q 001396 398 WSPDGSLLGVA-YS----KHIVQLYAYHGGSDARQQLEID-AHVG------NVNDLAFSAPCKQISVITC---------- 455 (1086)
Q Consensus 398 ~spdg~~las~-~~----d~~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~v~~s~d~~~l~l~s~---------- 455 (1086)
++||+++++.+ |. ...++++|+.+++.+... +. .-+. ....++|..++. ++++.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSS 212 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTT
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCCCcCcC
Confidence 88999998876 22 237999999998765421 11 0000 113457773433 44432
Q ss_pred eCCCcEEEEeCCCCc--eeEEeecCCcceE-EEeecccCCcc---EEEEEEcC---CeEEEEEcCCCce-eEEecCCCCc
Q 001396 456 GDDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPGLG 525 (1086)
Q Consensus 456 ~~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~s~d---g~i~vwd~~~~~~-~~~~~~~~~~ 525 (1086)
+....|+.|.+-+.. -...+.+....+. +.....++... .+++.+.+ ..+.+.+...... ...+......
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 123468888776653 2234444444332 22232232222 34544422 3455556543222 2333333221
Q ss_pred eEEEEEecCCCEEEEEeeCC------CCceeEEEEeCCCCe-------eeeE-EecccccCCceEEEEEecCCCEEEEEE
Q 001396 526 CTRMAYSANGRRLFSCGTSK------EGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAG 591 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s 591 (1086)
.+..+.++.+++....+. -..+.|...|+.++. ..+. +.... ...+..+.+..+ ..+++..
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 293 --TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp --EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEE
T ss_pred --eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEE
Confidence 233455666655432210 025568888887642 1222 32222 356778888875 5666666
Q ss_pred CCCc--EEEEEcCCCe-eEEE-EcCCCCCCCCceEEEecCCCE-EEEEEC---CCcEEEEECC
Q 001396 592 DDHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTL-LAVIAN---ENRIKILETP 646 (1086)
Q Consensus 592 ~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~-l~~~~~---dg~i~iw~~~ 646 (1086)
.++. +.++++.+++ .... +..... ..+.....++++.. +++.+. -+.+..++..
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6664 6777776665 2333 333221 22444555566544 443333 2556666665
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.60 E-value=26 Score=37.93 Aligned_cols=258 Identities=11% Similarity=0.054 Sum_probs=119.6
Q ss_pred CCCeeEEEeec--CCCEEEEEeCC----eEEEEEccCceEEEEEc------C--------CCCCeEEEEEcCCC-CCEEE
Q 001396 796 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIM------P--------PSPTATSLAFNPHD-NNVIA 854 (1086)
Q Consensus 796 ~~~v~~l~~s~--dg~~l~~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la 854 (1086)
...|.+|++.| ++.+.+.+..| .|... ...++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666666554 33332 22222211111 1 11247789998633 34455
Q ss_pred EEeCCCeEEEEEcCCceeEEEec---c----------------ccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCce
Q 001396 855 IGMDDSTILIYNARSSEVISKLE---G----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 855 sg~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
++...+.|...+= .|+.-..+. . ....|.+|.+.|. ...|..+..++.|...+ +.++
T Consensus 133 ~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT- 209 (394)
T ss_dssp EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-
T ss_pred EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-
Confidence 5555565554422 222211111 0 1235788999873 34444444444344332 2222
Q ss_pred eeeeeeec-cCC-C-c----cCCCCceEEEEecC-CCEEEEEeCCeEEEEEcCCccceeccccCC-c---cCEEEEEEeC
Q 001396 915 QTCRSLQT-PDG-V-M----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 982 (1086)
Q Consensus 915 ~~~~~~~~-~~~-~-~----~~~~~v~~~~~s~d-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~l~fs~ 982 (1086)
....+.. ... . . .....+..+++.|+ ...|.++..+.|...+- .++....+...- . ..+..+.+.|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 1111111 000 0 0 00124788999986 35566665666555442 233322221111 1 3456788876
Q ss_pred -CCCEEEEEEC-----------CCcEEEEEcCC-CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001396 983 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1049 (1086)
Q Consensus 983 -dg~~l~s~~~-----------Dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v 1049 (1086)
+...|..+.. ++...+|.... |+--..+. .-++....-..+...+++++|.++..|.+++.+|.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3334444432 33345555444 33222222 112221000112224578888555667777766664
Q ss_pred EEEccCCCCCCCCC
Q 001396 1050 YVIEPNEPGDTWAV 1063 (1086)
Q Consensus 1050 ~vw~~~~~~~~~~~ 1063 (1086)
. .-.+.+..|..
T Consensus 366 ~--~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 W--ASADEGEHWQC 377 (394)
T ss_dssp E--EESSTTSBCEE
T ss_pred E--EECCCCCCceE
Confidence 4 44556677764
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.64 E-value=13 Score=39.64 Aligned_cols=169 Identities=13% Similarity=0.191 Sum_probs=95.3
Q ss_pred eEEEEEccCc--eEEEEEcCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCceeEEEec-----
Q 001396 818 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 877 (1086)
Q Consensus 818 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 877 (1086)
+|.+||+.+. +.++++.-. ...+..+++. |. ++.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 887776432 2457788887 21 134444444 45789999999887544442
Q ss_pred ---------cc----cCCeEEEEEeCC----CCEEEEEeCCCcEEEEECCCCceee---eeeeecc--CCCccCCCCceE
Q 001396 878 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQT---CRSLQTP--DGVMTLAPSETH 935 (1086)
Q Consensus 878 ---------~h----~~~v~~l~~spd----g~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~--~~~~~~~~~v~~ 935 (1086)
|. ...|..|++||+ ++.|....-.+ -++|.+.+..... ...++.. ++.. ..-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~---s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKY---NDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTT---CCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCC---CCcce
Confidence 11 136888999998 77777665544 3556554311110 0011111 1100 11234
Q ss_pred EEEe-cCCCEEEE-EeCCeEEEEEcCC-c---cceeccc-cCCccCEEEEEEeCCCCEEEEE
Q 001396 936 IQFH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWF-PISSVPISQATFSCDCRMVFTS 990 (1086)
Q Consensus 936 ~~~s-~dg~~l~~-~~d~~i~vwd~~~-~---~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~ 990 (1086)
+++. .+|.+.++ ...+.|..|+..+ . +....+. ...-..+..+.+..+|.+.+.+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5675 56766666 5778899999875 1 1111111 1123456777777777655554
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.11 E-value=30 Score=36.84 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=92.0
Q ss_pred cEEEEeCCCC--ceeEEeecC------CcceEEEeec-ccC-----CccEEEEEEcCCeEEEEEcCCCceeEEec----C
Q 001396 460 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE-----NIHFIFSISVDGKIKAWLYDSLGARVDYD----A 521 (1086)
Q Consensus 460 ~i~iwd~~~~--~~~~~~~~h------~~~v~~~~~~-~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----~ 521 (1086)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++...++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778888888 887776432 3456777776 211 23333444467889999998876654331 1
Q ss_pred C--------------CCceEEEEEecC----CCEEEEEeeCCCCceeEEEEe---CCCCeeee--EEecccccCCceEEE
Q 001396 522 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEGAIKR--TYQGLQLQHNSVSVV 578 (1086)
Q Consensus 522 ~--------------~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd---~~~~~~~~--~~~~~~~~~~~v~~~ 578 (1086)
. ...+..++++|+ ++.|....-++. .++-.. ++...... +..+.......-..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 1 125778899998 777776654221 222222 11111111 111212001233455
Q ss_pred EEe-cCCCEEEEEECCCcEEEEEcCC-C---eeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 579 HFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 579 ~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
++. .+|..+++--+...|..|+..+ . .....+...........+.+.++|.+.+.
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 675 5666666666888899999876 1 12233322223334556666555543333
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.54 E-value=52 Score=33.31 Aligned_cols=197 Identities=6% Similarity=0.016 Sum_probs=108.4
Q ss_pred EEEeecCCCEEEEEeCCeEE---EEEccCceEEEEEcCCCCCeEEEEEcCC-CCCEEEEEeCCCeEEEEEcCCc------
Q 001396 801 CFALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSS------ 870 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~lasg~~dg~v~iwd~~~~------ 870 (1086)
.+..+....+++..+.|.++ +|++..++... +......|..+.. ++ +..+++..+.+|.++-..+..-
T Consensus 29 ~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G 106 (276)
T 3no0_A 29 ILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQG 106 (276)
T ss_dssp EEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTT
T ss_pred EEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC
Confidence 33344445555666667644 44544332211 2224556766644 42 4568999999999999987653
Q ss_pred eeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee-----eeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 871 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 871 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
.....+.. .+.+..+........++..+..|.+..+....-... ....+....+ ..|..+...+++..+
T Consensus 107 ~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 107 MPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYL 180 (276)
T ss_dssp EECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEE
T ss_pred eEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEE
Confidence 22222332 345666666666678888899998888876532110 0111211111 346665555555555
Q ss_pred EE-EeCCeEEEEEcCCccc-------eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEE--EEcCCCcee
Q 001396 946 LL-VHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASNLEVQ 1007 (1086)
Q Consensus 946 ~~-~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~v--Wd~~~~~~~ 1007 (1086)
+. +..|.++...+..-.. +..+ ...+.+..+....++..++..+.+|.+.. +++..-...
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLS 250 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBC
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCc
Confidence 44 7888888887653221 2221 12344555544444445666667777776 766554443
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.45 E-value=6.6 Score=48.33 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=35.1
Q ss_pred cCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 973 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 973 ~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
..+.+++..++..+++|-+.|+++|+|++.+++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567778888999999999999999999999999988764
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=78.46 E-value=68 Score=33.41 Aligned_cols=158 Identities=8% Similarity=0.094 Sum_probs=90.8
Q ss_pred CCCeeEEEeec---CCCEEEEEe-CCeEEEEEccCceE-------EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001396 796 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 864 (1086)
Q Consensus 796 ~~~v~~l~~s~---dg~~l~~~~-dg~i~iwd~~~~~~-------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 864 (1086)
...|..+..-+ +..+++..+ .|.++--.+..... ...+.. .+.+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455443333 466777776 69998888764322 122332 45565555555 5567788889999888
Q ss_pred EEcC--C---------ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee-----eeeeeccCCCcc
Q 001396 865 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT 928 (1086)
Q Consensus 865 wd~~--~---------~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~ 928 (1086)
+... . |...-.+. ....|.++...+++.+|+.++..|.++.-.+..-.... ...++.....
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 11112232 34567777777777789999999999988876432211 1111111101
Q ss_pred CCCCceEEEE-ecCCCEEEEEeCCeEEEEEcCC
Q 001396 929 LAPSETHIQF-HKDQTRFLLVHETHLAIYEAEE 960 (1086)
Q Consensus 929 ~~~~v~~~~~-s~dg~~l~~~~d~~i~vwd~~~ 960 (1086)
+.+..+.. ..+...++++.+|.+..+....
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 12334333 3334445557788877777653
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.37 E-value=86 Score=34.56 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=61.2
Q ss_pred CeeEEEeecCCC--EEEEEeCCeEEEEEccCce---EEEEEcC---------CCCCeEEEEEcCC---CCCEEEEEeC--
Q 001396 798 AVPCFALSKNDA--YLFSASGGVISLYIVMTFK---TILTIMP---------PSPTATSLAFNPH---DNNVIAIGMD-- 858 (1086)
Q Consensus 798 ~v~~l~~s~dg~--~l~~~~dg~i~iwd~~~~~---~~~~~~~---------~~~~i~~l~~s~~---d~~~lasg~~-- 858 (1086)
....|+|.|||. ++++-..|.|++++..... .+..+.. .......|+|+|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 356899999995 6666668999999754221 2222211 1356789999993 2444443322
Q ss_pred C----------CeEEEEEcCC----------ceeEEEec----cccCCeEEEEEeCCCCEEEEEeCCC
Q 001396 859 D----------STILIYNARS----------SEVISKLE----GHSKRVTGLVFSDALNILVSSGGDA 902 (1086)
Q Consensus 859 d----------g~v~iwd~~~----------~~~~~~l~----~h~~~v~~l~~spdg~~l~s~s~dg 902 (1086)
+ ..|.-|.+.. .+.+..+. .|. ...|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCCC
Confidence 1 1444455532 12333332 243 57899999999888877644
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=77.66 E-value=81 Score=33.86 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=80.2
Q ss_pred eEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCE
Q 001396 731 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 810 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 810 (1086)
+..+.++......++...+|.|..|-.......-.+.......+. ....+ ....|..++... ...
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~----------~v~~l----~~~~i~~va~G~-~hs 171 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPR----------VIESL----RGIEVVDVAAGG-AHS 171 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEE----------ECGGG----TTSCEEEEEECS-SEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCe----------Eeccc----CCCeEEEEEeCc-CeE
Confidence 444566666666777788888888865432211111100000000 00001 122444444332 223
Q ss_pred EEEEeCCeEEEEEccCc-----------eEEEEEcC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-e------
Q 001396 811 LFSASGGVISLYIVMTF-----------KTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E------ 871 (1086)
Q Consensus 811 l~~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~------ 871 (1086)
++...+|.|..|-.... .....+.. ....|..++... +..+.+.-..||.|+.|-.... +
T Consensus 172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 33344677777754320 11122221 234577777654 3456666788999999965421 1
Q ss_pred ----eEEEeccc-cCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001396 872 ----VISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 872 ----~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 910 (1086)
....+..- ...|..++...+ +.+....||.|+.|-..
T Consensus 251 ~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 251 DGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred CCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCC
Confidence 11122221 224666666533 44445689999999764
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.55 E-value=73 Score=39.07 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 839 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 467778887 7889999999999999999999988764
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=71.11 E-value=92 Score=31.46 Aligned_cols=203 Identities=10% Similarity=0.082 Sum_probs=107.5
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEE---EEcCCceeEEEeccccCCeEEEEEeC--CCCEEEEEeCCCcEEEEECCCCc
Q 001396 839 TATSLAFNPHDNNVIAIGMDDSTILI---YNARSSEVISKLEGHSKRVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~v~~l~~sp--dg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
.+..+.... ....|+.-+..|.++- |++..+.....+. ....|..+.. + +..+++.++.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 344433333 3334555666776554 4443322111133 3456766644 4 56799999999999999876532
Q ss_pred ee--eeeeeeccCCCccCCCCceEEEEecCCCEEE-EEeCCeEEEEEcCCccc-------eeccccCCccCEEEEEEeCC
Q 001396 914 IQ--TCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCD 983 (1086)
Q Consensus 914 ~~--~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~l~fs~d 983 (1086)
.. ....++..++ ..+..+........++ .+..|.+..+....-.. +..+.......|..+...++
T Consensus 102 ~~~~G~~~i~lkeg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~ 176 (276)
T 3no0_A 102 YKAQGMPIIKLTEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNG 176 (276)
T ss_dssp TCSTTEECSCCCTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESS
T ss_pred hhcCCeEEEecCCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCC
Confidence 00 0111111111 2355555544444444 48888888887643111 11111112466777766677
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeecc-ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE--EccC
Q 001396 984 CRMVFTSFVDGTLSIHEASNLEVQCRILS-TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV--IEPN 1055 (1086)
Q Consensus 984 g~~l~s~~~Dg~v~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~v--w~~~ 1055 (1086)
+.+++..+..|.++...+..-....+-.. ...+.. ++.+.. +.... +.+.++..+.+|.+.. +++.
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~---~~~lv~-~~~~~--~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGT---KDTLVD-LIPIK--EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCS---SSCEEE-EEEES--SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcC---CCcEEE-EEEeC--CCCEEEEEcCCCeEEEeeeCHH
Confidence 77888899999999988765544322110 001111 122221 11223 2457788888898887 7653
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=71.05 E-value=1.2e+02 Score=32.59 Aligned_cols=195 Identities=9% Similarity=0.083 Sum_probs=97.4
Q ss_pred CeeEEEeecCCCEEEEE-eCCeEEEEEccC-----------ceEEEEEcCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001396 798 AVPCFALSKNDAYLFSA-SGGVISLYIVMT-----------FKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILI 864 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~-----------~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~i 864 (1086)
.+..++++......+.. .+|.|..|-... ......+... ...|..++.. ..+.+.-..||.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEE
Confidence 34445555544443333 367777775432 1122222221 2356666654 456666778999999
Q ss_pred EEcCC-ce----------eEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---------eeeeeeecc
Q 001396 865 YNARS-SE----------VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI---------QTCRSLQTP 923 (1086)
Q Consensus 865 wd~~~-~~----------~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~---------~~~~~~~~~ 923 (1086)
|-... ++ ....+.. ....|..++......+.+....||.|..|-.....+ .....+..+
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 97543 11 1111111 223577777654335666667899999997543111 111111111
Q ss_pred CCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccce-----------eccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 924 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----------KQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 924 ~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~-----------~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
.+ ..|..++.... ..++...++.|+.|-....-.+ ..+.......|..++.. ..+.+....
T Consensus 263 ~~-----~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~ 334 (389)
T 3kci_A 263 TG-----LGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTE 334 (389)
T ss_dssp TT-----SCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEET
T ss_pred CC-----CcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECC
Confidence 11 12333333222 2234467888888876431111 00011112356665543 344455568
Q ss_pred CCcEEEEEcCC
Q 001396 993 DGTLSIHEASN 1003 (1086)
Q Consensus 993 Dg~v~vWd~~~ 1003 (1086)
||.|+.|=...
T Consensus 335 ~G~v~~wG~n~ 345 (389)
T 3kci_A 335 DGEVYTWGDND 345 (389)
T ss_dssp TCCEEEEECCT
T ss_pred CCCEEEeeCCC
Confidence 99999998754
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=68.27 E-value=1.1e+02 Score=31.38 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=80.1
Q ss_pred CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEe-ecCCCEEEEEeCC
Q 001396 739 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL-SKNDAYLFSASGG 817 (1086)
Q Consensus 739 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~-s~dg~~l~~~~dg 817 (1086)
+...++..+.+|.++--.+..-.... ..| .....+.. . ..+..+.. ..+...++..+.|
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~---------------r~G--~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G 167 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLR---------------TAG--KVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEG 167 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCC---------------TTC--EESSCCCT--T-CCEEEEEEECTTCEEEEEETTS
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccc---------------cCC--eEEEEECC--C-CEEEEEEEeCCCCEEEEECCCC
Confidence 45668888999998876543211000 011 11222221 3 34444333 3444455555578
Q ss_pred eEEEEEccCc---------eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---------eEEEeccc
Q 001396 818 VISLYIVMTF---------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGH 879 (1086)
Q Consensus 818 ~i~iwd~~~~---------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h 879 (1086)
.+..+....- .....+. ....|.++.... ++..+++.+..|.++-.++..-. ....+..-
T Consensus 168 ~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~ 245 (307)
T 1zi0_A 168 KVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 245 (307)
T ss_dssp EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTT
T ss_pred cEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCC
Confidence 8777776431 1111222 345677776555 45678888999999888774311 11223323
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 880 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
.+.+..+....+...++..+.+|.+.-..++.
T Consensus 246 ~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 246 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 35565555544445556666777766666654
No 369
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=66.59 E-value=3.2 Score=33.14 Aligned_cols=27 Identities=37% Similarity=0.684 Sum_probs=24.4
Q ss_pred CCchhHHHHHHHHHhhhccCchhhhhh
Q 001396 1 MSKLNKDLVFLILQFLNEEGFTESAHI 27 (1086)
Q Consensus 1 ~~~~~~evvrli~q~L~~~G~~~s~~~ 27 (1086)
|+...+||-.||.-||.|.||..||.+
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~ 27 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFT 27 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 778899999999999999999999986
No 370
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=59.23 E-value=1.9e+02 Score=30.84 Aligned_cols=263 Identities=8% Similarity=0.017 Sum_probs=118.9
Q ss_pred CccEEEEEECC--CCCEEEEEeCCC--EEEEEEe-cCCCccccceE---ecc--------ccccEeEEEecCC--CCcEE
Q 001396 390 GVSVNRVVWSP--DGSLLGVAYSKH--IVQLYAY-HGGSDARQQLE---IDA--------HVGNVNDLAFSAP--CKQIS 451 (1086)
Q Consensus 390 ~~~V~~l~~sp--dg~~las~~~d~--~i~iwd~-~~~~~~~~~~~---~~~--------h~~~v~~v~~s~d--~~~l~ 451 (1086)
...|.+|++.| ++...|.+ ..| .-.||.. ..|+....... +.. +...|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 35799999998 45555444 333 0123333 33333222111 111 1135788999873 34 3
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeec-------------------CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 452 VITCGDDKTIKVWDAVTGSRTYSFEG-------------------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 452 l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
+..+...+.|...+ ..|+.-..+.. ....+.+|.+.+...+ .++.+..++.|... ..
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TD 206 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SS
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CC
Confidence 44444456555554 33333222211 1235678887654333 34445444443332 32
Q ss_pred CceeE-EecC--C-----------CCceEEEEEecC-CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec-ccc-cCCce
Q 001396 513 LGARV-DYDA--P-----------GLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-LQL-QHNSV 575 (1086)
Q Consensus 513 ~~~~~-~~~~--~-----------~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~-~~~~v 575 (1086)
..... .... . ...+.++++.|+ ...++.+.. . -|+..+- .++.-..+.. ... ....+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----~-gl~~s~D-~G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----C-GIYRMDR-REGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET----T-EEEEEET-TTTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC----C-eEEEeCC-CCCcceECCCCCCCCCccce
Confidence 22221 1110 0 124788999886 355655542 2 2544442 2322222211 110 00235
Q ss_pred EEEEEecC-CCEEEEEEC-----------CCcEEEEEcCC-CeeEEEEcC--CCCC----CCCceEEEecC-CCEEEEEE
Q 001396 576 SVVHFDTA-KDQILAAGD-----------DHVIKIWDMNK-VQLLTTIDA--GGGL----PENPRICFNKN-GTLLAVIA 635 (1086)
Q Consensus 576 ~~~~~~~~-~~~l~~~s~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~----~~v~~v~~s~~-~~~l~~~~ 635 (1086)
..+.++|. ...++++.. ++...+|...+ |+.-..+.. .... .....++++|. ...|++++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 67778763 345555532 33345555544 333333321 1100 01236888874 45566776
Q ss_pred CCCcEEEEECCCCCeeeeccccccceeeeEE
Q 001396 636 NENRIKILETPESNSVDAAGVLSDNLRKLSV 666 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 666 (1086)
.++.|..- ...+.....+......+.++++
T Consensus 361 ~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 361 TGGEIWAS-ADEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp TTSCEEEE-SSTTSBCEEEECSCSCEEEEEE
T ss_pred CCCeEEEE-CCCCCCceEcccCCCCeeEEEE
Confidence 55554432 3334444444433444555554
No 371
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.39 E-value=24 Score=36.41 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=65.8
Q ss_pred cccHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhh-ccccCCCCHHHHH
Q 001396 29 YFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKD-LKDFAPGNEELFK 107 (1086)
Q Consensus 29 ~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~-l~~~~~~~~~~~~ 107 (1086)
...+.+|++.|-+|++=+|.+.+..+. .+| +.++++++|+.+|..= +.-+++.+...-.
T Consensus 14 ~r~l~rl~~~I~~G~yYEAhQ~~Rtl~----------~Ry----------~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 14 AKTLQRFENKIKAGDYYEAHQTLRTIA----------NRY----------VRSKSYEHAIELISQGALSFLKAKQGGSGT 73 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH----------HHH----------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHH----------HHH----------HHhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 345788999999999999999877650 222 2245666777777663 2223333455555
Q ss_pred HHHHHhcccccccccccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhhhhcC
Q 001396 108 ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHC 181 (1086)
Q Consensus 108 ~L~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~c 181 (1086)
.|+.++.- .... .+ .....+++.+|.+-++ .+|++ .+ ...++|+.|++|=....
T Consensus 74 DLa~llve-v~~~----~~-~~~~~~~~~rl~~l~~-~~p~~------------~~-~r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 74 DLIFYLLE-VYDL----AE-VKVDDISVARLVRLIA-ELDPS------------EP-NLKDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHHHH-HHHH----TT-CCCSHHHHHHHHHHHT-TCCTT------------CT-THHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH-HHHH----cC-CCCCHHHHHHHHHHHH-HCCCC------------Cc-hHHHHHHHHHHHHhhcC
Confidence 66665552 1111 11 1123556666664444 44542 12 35788889999987643
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.39 E-value=22 Score=40.58 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=41.4
Q ss_pred ceEEEEecCCCEEEEEe-------------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEE
Q 001396 933 ETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 990 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~ 990 (1086)
.-.|+|+|+|.++++.. .+.+.+.+..+++..+-+.......++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46799999999666631 12356666667776554333347899999999999988765
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.26 E-value=25 Score=39.43 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.2
Q ss_pred CceEEEEecCCCEEEEEe-------------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 932 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 932 ~v~~~~~s~dg~~l~~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
....|+|+++|.+.++.. .+.+..++..+|+..+.+.......++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356799999999888432 125677777777755433222356799999999999888764
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.99 E-value=31 Score=40.00 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.3
Q ss_pred CEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 974 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 974 ~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
.|.++. .+..+|++-+.|.++|+|++.++.++.....
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 354443 3578999999999999999999999888765
No 375
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=53.20 E-value=2.8e+02 Score=31.00 Aligned_cols=166 Identities=12% Similarity=0.123 Sum_probs=90.1
Q ss_pred cccccEeEEEecCCCCcEEEEEEeCCCc----------------------------EEEEeCCCCceeEEeecC--Ccc-
Q 001396 433 AHVGNVNDLAFSAPCKQISVITCGDDKT----------------------------IKVWDAVTGSRTYSFEGH--GAP- 481 (1086)
Q Consensus 433 ~h~~~v~~v~~s~d~~~l~l~s~~~d~~----------------------------i~iwd~~~~~~~~~~~~h--~~~- 481 (1086)
.|-..+....|..||+. -++....+++ +.|+|=.+|+.+.++.-. .+.
T Consensus 176 a~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~ 254 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNV 254 (591)
T ss_dssp TTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCG
T ss_pred cccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcc
Confidence 35666777888888876 4555555554 789998899888776431 111
Q ss_pred --------------eEEEeecccCCccEEEEEE---cCCeEEEEEcCCCceeE--EecCCC-----------CceEEEEE
Q 001396 482 --------------VYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARV--DYDAPG-----------LGCTRMAY 531 (1086)
Q Consensus 482 --------------v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~--~~~~~~-----------~~i~~~~~ 531 (1086)
..+++.. +.+...++.+- .-..|..||++..+... .+.... +......+
T Consensus 255 ~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDV 333 (591)
T 2zux_A 255 SDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADV 333 (591)
T ss_dssp GGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECC
T ss_pred cccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeC
Confidence 1223322 22223333332 22347788887665433 332211 23333344
Q ss_pred ecCCCE-EEEEeeCCCCceeEEEEeCCCCeeeeEEe-cccccCCceEEEEEecCC--CEEEEEECCC----cEEEEEcCC
Q 001396 532 SANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAK--DQILAAGDDH----VIKIWDMNK 603 (1086)
Q Consensus 532 s~d~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~s~dg----~i~iwd~~~ 603 (1086)
.-||+- |+.++. ++| ..|+.+.... +| ...+....|.|+. ..++.+.+++ -..+.|..+
T Consensus 334 DgDG~dEIv~Gs~---------~iD-~dG~~L~st~~gH---GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 334 DGDGKDEIIFGSM---------AVD-HDGKGMYSTGLGH---GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp SSSSSCEEEETTE---------EEC-TTSCEEEECSCCC---CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CCCCCceEEEeee---------EEC-CCCCEeeeCCCCC---CCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 555543 222221 222 2333333322 33 3777888888874 4666666542 355689999
Q ss_pred CeeEEEEcCC
Q 001396 604 VQLLTTIDAG 613 (1086)
Q Consensus 604 ~~~~~~~~~~ 613 (1086)
|+.+......
T Consensus 401 G~vlw~~~~~ 410 (591)
T 2zux_A 401 GKILWGVYAG 410 (591)
T ss_dssp CCEEEEECCS
T ss_pred CcEEEEcCCC
Confidence 9999887643
No 376
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=51.28 E-value=3.8 Score=32.50 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhhhccCchhhhhh---c-----cccHHHHHHHHhCCCHHHHHHhhccC
Q 001396 4 LNKDLVFLILQFLNEEGFTESAHI---F-----YFDMKFFEDMILDGKWEDVEQYLSSF 54 (1086)
Q Consensus 4 ~~~evvrli~q~L~~~G~~~s~~~---~-----~~~~~~~~~~i~~g~w~~~~~~l~~~ 54 (1086)
-++|+=+-|++||..+||.+++.+ + .++...=..-+|+-+|..++++=+++
T Consensus 9 Q~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 9 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 367899999999999999999887 1 11111123346666677666665544
No 377
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.48 E-value=35 Score=35.44 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=64.8
Q ss_pred cccHHHHHHHHhCCCH---HHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhh-ccccCCCCHH
Q 001396 29 YFDMKFFEDMILDGKW---EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKD-LKDFAPGNEE 104 (1086)
Q Consensus 29 ~~~~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~-l~~~~~~~~~ 104 (1086)
...+.+|++.|-+|++ =+|-+.+..+. .+| +.++++++|+.+|..= +.-++.-+..
T Consensus 13 ~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~----------~Ry----------~~~k~y~eAidLL~~GA~~ll~~~Q~~ 72 (336)
T 3lpz_A 13 ERIIARLQRRIAEGQPEEQYEAAQETRLVA----------ARY----------SKQGNWAAAVDILASVSQTLLRSGQGG 72 (336)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------HHH----------HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHH----------HHH----------HhhcCHHHHHHHHHHHHHHHHHCCCcc
Confidence 3467899999999999 88888776540 222 2356667777777662 2223333444
Q ss_pred HHHHHHHHhcccccccccccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhhhh
Q 001396 105 LFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHV 179 (1086)
Q Consensus 105 ~~~~L~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~ 179 (1086)
.=..|+.+|.- -... .+ .....+++.+|++-++. +||+ .|. ...+|+.|++|=..
T Consensus 73 sg~DL~~llve-vy~~----~~-~~~~~~~~~rL~~L~~~-~~~~------------~p~-r~~fi~~ai~WS~~ 127 (336)
T 3lpz_A 73 SGGDLAVLLVD-TFRQ----AG-QRVDGASRGKLLGCLRL-FQPG------------EPV-RKRFVKEMIDWSKK 127 (336)
T ss_dssp HHHHHHHHHHH-HHHH----HT-CCCCHHHHHHHHHHHTT-SCTT------------CHH-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHH----cC-CCCCHHHHHHHHHHHHh-CCCC------------CcH-HHHHHHHHHHHHhh
Confidence 45566665551 1111 11 11234666666666654 3431 123 47789999999875
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.61 E-value=8.9 Score=48.49 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.6
Q ss_pred CEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccc
Q 001396 974 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1013 (1086)
Q Consensus 974 ~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~ 1013 (1086)
.+.+++..++..+++|-+.|+++|||++.++.++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3445567788899999999999999999999999887643
No 379
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.44 E-value=38 Score=32.00 Aligned_cols=83 Identities=11% Similarity=0.258 Sum_probs=56.1
Q ss_pred ccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHH-HHHHHhcccccccccccccccCCChHH
Q 001396 56 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFK-ELAQLLTLDDIRDHELLSKYYGDALSA 134 (1086)
Q Consensus 56 ~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~-~L~~ll~~~~~~~~~~~~~~~~~~~~~ 134 (1086)
.+++..+.. +.-+|.+|..+=.+++|++.+|..+|+..+..-. +...++ .|..++-+.+. .++.+.+ =|
T Consensus 103 ~l~~~l~e~-i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~--s~~kLr~kL~~II~~Kd~-~H~~lqn------FS 172 (235)
T 3bu8_A 103 TLTEAVVES-SRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP--TTQKLRNDLLNIIREKNL-AHPVIQN------FS 172 (235)
T ss_dssp TCCHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG--GGHHHHHHHHHHHHHTCT-TSHHHHT------CC
T ss_pred cCcHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCc-ccHHHHh------cc
Confidence 333333333 7889999999999999999999999998887532 344344 67777766553 3443333 24
Q ss_pred HHHHHHHHHhhccc
Q 001396 135 RKNMMLELKQIIEA 148 (1086)
Q Consensus 135 r~~l~~~l~~~~~~ 148 (1086)
...+++++..++..
T Consensus 173 y~~~~~ki~~fve~ 186 (235)
T 3bu8_A 173 YETFQQKMLRFLES 186 (235)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777777665
No 380
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=46.08 E-value=3.6e+02 Score=30.17 Aligned_cols=295 Identities=13% Similarity=0.091 Sum_probs=145.0
Q ss_pred CCCCceEeeecCCCceEEEEEeccCc----------------------------EEEEecCCCceeeeeeeeeeeccccc
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGD----------------------------TGLWDVNSGQKLFIRNFKVWDIGACS 378 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~----------------------------v~iwd~~~~~~~~~~~~~~~~~~~~~ 378 (1086)
|-..+....|.-||+.=+++.+.+|+ +.|+|=.+|+.+....+..-.-..+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 55678889999999766777777776 78888888887765332100000000
Q ss_pred eeeeeeeecCCCcc--EEEEEEC-CCCCEEEEEe---CCCEEEEEEecCCCccccceEecc----------c-cccEeEE
Q 001396 379 MLFKTALVRDPGVS--VNRVVWS-PDGSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDA----------H-VGNVNDL 441 (1086)
Q Consensus 379 ~~~~~~~~~~h~~~--V~~l~~s-pdg~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~----------h-~~~v~~v 441 (1086)
.- . -.++... ..++++- -+...++.+- ....+..||..+++... ...+.. . ...+.-.
T Consensus 257 WG--D--~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~va 331 (591)
T 2zux_A 257 WG--D--SYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLSIA 331 (591)
T ss_dssp GT--C--SSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCEEE
T ss_pred cc--c--ccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCeeE
Confidence 00 0 0000000 1223322 1111222221 12246666666554211 111111 0 1234445
Q ss_pred EecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCCcceEEEeecccCCccEEEEEEcCC----eEEEEEcCCCcee
Q 001396 442 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGAR 516 (1086)
Q Consensus 442 ~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~ 516 (1086)
.+.-||+. -++.|+ .++| ..|+.+.+. .+|...+....|.|+..|.-++.+.+++ -..+.|..+++.+
T Consensus 332 DVDgDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 332 DVDGDGKD-EIIFGS-----MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp CCSSSSSC-EEEETT-----EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred eCCCCCCc-eEEEee-----eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 56677776 455444 1344 455555444 3788888777787776677777776652 3445788888887
Q ss_pred EEecCC--CCceEEEEEecCCC--EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC
Q 001396 517 VDYDAP--GLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 517 ~~~~~~--~~~i~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
...... .+......|.|+.. .+.+ . -.+++. +|+.+..... . ..-..+-|..|...-+.-
T Consensus 405 w~~~~~~d~Gr~~~~Didp~~pG~E~w~-~--------~~l~~~-~G~~i~~~~p-~---~~N~~i~WdGDl~relld-- 468 (591)
T 2zux_A 405 WGVYAGKDVGRGMAADIDPRYPGQEVWA-N--------GSLYSA-KGVKIGSGVP-S---STNFGIWWDGDLLREQLD-- 468 (591)
T ss_dssp EEECCSSCCCCEEEECCCTTSSSCEEEE-T--------TEEECT-TSCBCSSCCC-S---CCSEEECCSSSSSCEEEE--
T ss_pred EEcCCCCCCCceeEEecCCCCCceEEEe-c--------CceECC-CCCEecCCCC-C---CcceeEEECCCCcHhhhC--
Confidence 766443 23333344555422 2222 0 134553 3343332111 0 112346677665333332
Q ss_pred CCcEEEEEcCCCeeEEEEcCCC-----CCCCCceEEEec--CC--CEEEEEECCCcEEEEECCCCC
Q 001396 593 DHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNK--NG--TLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 593 dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~--~~--~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
.+.|.-|+...++....+...+ +.....++...- |. ..|+-..++..++||......
T Consensus 469 ~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt 534 (591)
T 2zux_A 469 SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPT 534 (591)
T ss_dssp TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCC
T ss_pred CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCC
Confidence 2468889988776444443321 111223333322 22 233334455679999876443
No 381
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=45.79 E-value=47 Score=29.87 Aligned_cols=103 Identities=9% Similarity=-0.027 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhccCchhhhhh-ccccHHHH----HHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcC
Q 001396 6 KDLVFLILQFLNEEGFTESAHI-FYFDMKFF----EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALD 80 (1086)
Q Consensus 6 ~evvrli~q~L~~~G~~~s~~~-~~~~~~~~----~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~ 80 (1086)
++|-+-|.++|.+-+.-+-+.. .......+ ......|++++|+.++.....+..... . +.+ -.=..| ..
T Consensus 9 ~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~-~-~~~-~lg~~~---~~ 82 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV-D-YIM-GLAAIY---QI 82 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-HHH-HHHHHH---HH
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-HHH-HHHHHH---HH
Confidence 4677888999998886555444 22222222 345779999999999887744432221 0 111 112222 35
Q ss_pred CCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001396 81 GHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 115 (1086)
Q Consensus 81 ~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~ 115 (1086)
.|++++|+.++++-++-- +.+++-+..|+.++..
T Consensus 83 ~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp TTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 899999999999854322 2356667778777765
No 382
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=45.14 E-value=2.8e+02 Score=28.67 Aligned_cols=165 Identities=10% Similarity=0.057 Sum_probs=93.7
Q ss_pred CCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCce-------eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001396 837 SPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSE-------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 907 (1086)
Q Consensus 837 ~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~-------~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 907 (1086)
...|.++..-++ +..+++..+.+|.++--.+..-. ....+.. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345666544331 46799999999999998876522 2223333 3456666666666778888899988888
Q ss_pred ECC--CCcee----e-eeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccc-------eeccc-cCC
Q 001396 908 DVD--GWGIQ----T-CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC-------LKQWF-PIS 971 (1086)
Q Consensus 908 d~~--~~~~~----~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~-------~~~~~-~~h 971 (1086)
.+. .-... . ...+.... ...|.++..-+++.+|+. +..|.++.-.+..-.. +..+. ..-
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~-----~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNI-----DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCT-----TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCC-----CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 777 31110 1 11111111 134666666555555554 7888888877653221 11111 111
Q ss_pred ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 972 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 972 ~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
.+.+..+....+...++..+.+|.+.-+++..-...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~ 283 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKA 283 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBC
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhhcccc
Confidence 334555554444556666677777777776655444
No 383
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=44.70 E-value=2.7e+02 Score=28.42 Aligned_cols=193 Identities=12% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCcccc------ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE---eCCC--
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQ------QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW---DAVT-- 468 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~------~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw---d~~~-- 468 (1086)
|+..++++.+.+|.|+--.+.+-+..+. ...+..+ +.+..+....... .++..+..|.++-. ++..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3556788888999887766543211110 0011222 2333333333334 34555566765444 3322
Q ss_pred ----CceeE---EeecCCcceEEEeecc-cCCccEEEEEEcCCeEEEEEcCCCc-----eeEEecC-CCCceEEEEEecC
Q 001396 469 ----GSRTY---SFEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLG-----ARVDYDA-PGLGCTRMAYSAN 534 (1086)
Q Consensus 469 ----~~~~~---~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~-~~~~i~~~~~s~d 534 (1086)
|.++. .+. ....|.++.... ..+..+++..+.+|.++--.+.... ....+.. ....+..+....+
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~ 156 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 156 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence 22211 122 334555554321 2345689999999999998765322 1121111 2244545444444
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCee-------eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAI-------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
...++..+. .+.+..++...-.. ++.+.-. ....|.++....++..++..+..|.++-.++.
T Consensus 157 ~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 157 EDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 445555543 55666666532111 1111111 12456666555556678889999998888774
No 384
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.05 E-value=2.9e+02 Score=28.51 Aligned_cols=194 Identities=9% Similarity=0.083 Sum_probs=99.3
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe---CCC------C
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVT------G 469 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd---~~~------~ 469 (1086)
|+..++++.+.+|.|+--.+..-+... ....+... +.+..+....... .++..+..|.+.-.. +.. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 566778888999998877654211000 00012232 2344444444444 455556677655443 322 3
Q ss_pred ceeE---EeecCCcceEEEeeccc-CCccEEEEEEcCCeEEEEEcCCCc------eeEEecC-CCCceEEEEEecCCCEE
Q 001396 470 SRTY---SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLG------ARVDYDA-PGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 470 ~~~~---~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~-~~~~i~~~~~s~d~~~l 538 (1086)
.++. .+. ....|.++..... .++.+++.++.+|.++...+.... ....+.. ....+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 3221 122 2334555433221 235689999999999998775322 2222221 22445555554445555
Q ss_pred EEEeeCCCCceeEEEEeCCCC----e---eeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCC
Q 001396 539 FSCGTSKEGESFLVEWNESEG----A---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~----~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~ 603 (1086)
+..+. .+.+..++...- + -++.+.-.. ...|.++..-+++. .++..+..|..+..++..
T Consensus 159 ~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKE--GDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCT--TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCC--CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55554 556666665321 1 111111111 24566665444445 788889899888877654
No 385
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.51 E-value=2.5e+02 Score=32.64 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
+..++++-+.|.++|+|++.+++++.+..-
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467999999999999999999998877553
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=43.47 E-value=66 Score=27.17 Aligned_cols=90 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred CCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCC
Q 001396 941 DQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1019 (1086)
Q Consensus 941 dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1019 (1086)
+|.+.+. ..||.+.+|+...+..+-.--......-..+.+..||.+++... ++.+ +|.-.+....
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~~------------ 88 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNTVGQE------------ 88 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSCCCSS------------
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCCcCCC------------
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCCCCCC
Q 001396 1020 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1065 (1086)
Q Consensus 1020 ~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 1065 (1086)
+...++-.+||.+.+++ .+.|+..|
T Consensus 89 -----------------~~~~~~L~~dGnlvly~----~~~W~s~~ 113 (113)
T 3mez_B 89 -----------------GDYVLILQINGQAVVYG----PAVWSTAA 113 (113)
T ss_dssp -----------------SCCEEEECTTSCEEEEC----SEEEESCC
T ss_pred -----------------CCEEEEEcCCceEEEec----CCEecCCC
No 387
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=43.25 E-value=3.2e+02 Score=28.82 Aligned_cols=64 Identities=6% Similarity=-0.010 Sum_probs=37.5
Q ss_pred ecCCCEEEEEECCCcEEEEEcCC-------CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 581 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 581 ~~~~~~l~~~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
-|+...+++.+.+|.|+--.+.. ++-+..+....+ ..+..+........++..+..|.+.-+..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 46778899999999998765532 111222222222 23444555555566777777777665543
No 388
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=41.79 E-value=3e+02 Score=28.14 Aligned_cols=194 Identities=9% Similarity=0.034 Sum_probs=107.5
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEE-------EEEc-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---c----
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTI-------LTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S---- 870 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~-------~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~---- 870 (1086)
+..++++.+ +|.|+--.+...+.. ..+. ...+.+..+.... ....++..+..|.++-..... .
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 444555555 688877766543221 1111 1234455555544 455777788899877766532 1
Q ss_pred --eeE---EEeccccCCeEEEEEeC---CCCEEEEEeCCCcEEEEECCCCcee---eeeeeeccCCCccCCCCceEEEEe
Q 001396 871 --EVI---SKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQ---TCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 871 --~~~---~~l~~h~~~v~~l~~sp---dg~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
..+ -.+. ....|.++...+ +..+|+.++..|.++.-.+..-... ....+....+ +.+..+...
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~-----d~lv~~~~~ 159 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK-----DFVTSAEIV 159 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT-----CCEEEEEEE
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC-----CEEEEEEEe
Confidence 111 1122 223465554443 4678888999999998887542211 1111211111 245555544
Q ss_pred c-CCCEEEEEeCCeEEEEEcCCccc-------eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 940 K-DQTRFLLVHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 940 ~-dg~~l~~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
. +...++++.+|.+..+....-.. +..+.......|.++....++..|++.+..|..+..++..-...
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~ 235 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISEL 235 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhccc
Confidence 4 44455558889988888764211 11111112456777666666777888899999999888765443
No 389
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.14 E-value=77 Score=39.91 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001396 839 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566666 78899999999999999999999887743
No 390
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.01 E-value=79 Score=35.98 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=47.9
Q ss_pred ceEEEEEecCCCEEEEEeeCC--------CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE
Q 001396 525 GCTRMAYSANGRRLFSCGTSK--------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 590 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 590 (1086)
..-.|+|+++|++++.--.+. .+...+.+.+..+++..+.+.++. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 456799999999666532211 134567888888898888887765 5789999999999888764
No 391
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=39.45 E-value=3.4e+02 Score=27.98 Aligned_cols=237 Identities=7% Similarity=0.102 Sum_probs=121.0
Q ss_pred cCCCEEEEEe-CCeEEEEEccCceE----EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC---C------ce
Q 001396 806 KNDAYLFSAS-GGVISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---S------SE 871 (1086)
Q Consensus 806 ~dg~~l~~~~-dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~---~------~~ 871 (1086)
|+..++++.+ +|.|+--.+...+. -..+. ..+.+..+.... ....|+..+..|.++-+... . |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3444555555 57777665432211 01122 234455554444 45577778888877665542 2 33
Q ss_pred eEEE---eccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCCceee----eeeeeccCCCccCCCCceEEEEec-
Q 001396 872 VISK---LEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGWGIQT----CRSLQTPDGVMTLAPSETHIQFHK- 940 (1086)
Q Consensus 872 ~~~~---l~~h~~~v~~l~~spd---g~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~- 940 (1086)
.+.. +. ....|.++..-++ +.+++.++.+|.++--.+..-.... ...++...+ +.+..+....
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2211 22 2334665543333 6789999999999998876422111 112222222 2344444444
Q ss_pred CCCEEEEEeCCeEEEEEcCCccc-------eeccccCCccCEEEEEEeCCCC-EEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 941 DQTRFLLVHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 941 dg~~l~~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~-~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
+...++.+.+|.+..+....-.. +..+.......|.++..-+++. .|++.+..|..+.-++..-....+-..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 44455558889888888753211 1111111245666665544455 788888888888877765332222110
Q ss_pred cc----ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1013 TA----YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1013 ~~----~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.. .++.. ++.+ ..++...+ .+.++..+..|.+....+.
T Consensus 235 Gv~~~~~~~~~--~~~l-~~~~~v~~--~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 235 GVVILRELKAN--PHRI-SGFVVAQD--SDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CEECSCCCSSS--CCCE-EEEEEECT--TCEEEEEETTSCEEEEEGG
T ss_pred CEECeeecCCC--CceE-EEEEEeCC--CCeEEEEeCCCeEEEEEhh
Confidence 00 01111 1111 11223343 4567788888887766654
No 392
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=38.98 E-value=1.2e+02 Score=34.21 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=46.3
Q ss_pred ceEEEEEecCCCEEEEEeeC--------CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE
Q 001396 525 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 590 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 590 (1086)
....|+|+++|.+.+..-.. +.+...++.++..+++..+.+.+.. ...++.++|+||++.|++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEE
Confidence 46789999999877733211 1124478888988888777766543 3578999999999988775
No 393
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=34.06 E-value=4.6e+02 Score=27.94 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=98.0
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-e----------eEEEeccc-cCCeEEEEEeCCCCEEEEEeCCCcEE
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E----------VISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIF 905 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~i~ 905 (1086)
..|..++.. ..+.+.-..||.|+.|-.... + ....+... ...|..++.. ..+.+....||.|+
T Consensus 121 ~~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~ 195 (406)
T 4d9s_A 121 IRIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLY 195 (406)
T ss_dssp CCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEE
Confidence 357777664 446666788999999975431 1 11122211 2256666654 34555567899999
Q ss_pred EEECCCCce---------eeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccce-----------e
Q 001396 906 VWDVDGWGI---------QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----------K 965 (1086)
Q Consensus 906 iwd~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~-----------~ 965 (1086)
.|-...... .....+..+.+ ..|..++.... ..++...++.|+.|-....-.+ .
T Consensus 196 ~wG~n~~GqlG~g~~~~~~~p~~v~~~~~-----~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~ 269 (406)
T 4d9s_A 196 GWGWGRYGNLGLGDRTDRLVPERVTSTGG-----EKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH 269 (406)
T ss_dssp EEECCTTSTTCSSSSCCEEEEEECCCSTT-----CCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEE
T ss_pred EeeCCCCCCCCCCCCCCcCccEEecccCC-----ceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccE
Confidence 997543211 01111111111 12444333221 2233467888888865432111 0
Q ss_pred ccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceee------eeccccccCCCCccCcccceEEEECCCCCCE
Q 001396 966 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC------RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1039 (1086)
Q Consensus 966 ~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1039 (1086)
.+.......|..++.. ..+.+.-..||.|+.|=....-.+. ...+.. ... ........++.- ...
T Consensus 270 ~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~-v~~---~~~~~v~~va~G---~~h 340 (406)
T 4d9s_A 270 KLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ-VRF---PDDQKVVQVSCG---WRH 340 (406)
T ss_dssp ECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEE-ECC---GGGCCEEEEEEC---SSE
T ss_pred EecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEE-Eec---cCCCcEEEEEeC---CCe
Confidence 0000112346655543 3344455689999999754321110 111000 000 001123344443 345
Q ss_pred EEEEeCCCcEEEEccCCCC
Q 001396 1040 FAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1040 l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.++-..+|.|+.|.-...+
T Consensus 341 s~alt~~G~v~~wG~n~~G 359 (406)
T 4d9s_A 341 TLAVTERNNVFAWGRGTNG 359 (406)
T ss_dssp EEEEETTSCEEEEECCTTS
T ss_pred EEEEeCCCCEEEecCCCCC
Confidence 6666789999999975443
No 394
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=34.00 E-value=5.5e+02 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCceEEEEEecC--CCEEEEEECC----CcEEEEEcCCCeeEEEEcCC
Q 001396 572 HNSVSVVHFDTA--KDQILAAGDD----HVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 572 ~~~v~~~~~~~~--~~~l~~~s~d----g~i~iwd~~~~~~~~~~~~~ 613 (1086)
...+....|.|+ +-.++.+.++ .-..+.|..+|+.+......
T Consensus 367 GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 367 GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCc
Confidence 366777778887 4455555554 25678899999998887654
No 395
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=32.68 E-value=53 Score=31.30 Aligned_cols=86 Identities=16% Similarity=0.300 Sum_probs=47.8
Q ss_pred HHHHHHHhhhccCchhhhhh----ccccHHHHHHHHhCCC----HHH------HHHhhccC-cccccccccceehhhhhh
Q 001396 8 LVFLILQFLNEEGFTESAHI----FYFDMKFFEDMILDGK----WED------VEQYLSSF-TKVDDNRYSTKIYFEIRK 72 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~~----~~~~~~~~~~~i~~g~----w~~------~~~~l~~~-~~~~~~~~~~~~~~~i~~ 72 (1086)
+|.-++++|++.|+..-.-- ....++.|++.+..|. +.+ +-..|+.+ ..+|+.. +-+.+|+
T Consensus 20 iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLpePL----i~~~l~~ 95 (201)
T 2ovj_A 20 IVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPL----LTFRLNR 95 (201)
T ss_dssp HHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTSSSCT----TCTTTHH
T ss_pred HHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhCCCCC----CCHHHHH
Confidence 56777888888886422111 4557888999988773 221 11112211 2444442 3345554
Q ss_pred hhhhhhcCCCCHHHHHHHHHhhcccc
Q 001396 73 QNFFEALDGHDIAKALNILKKDLKDF 98 (1086)
Q Consensus 73 q~~~Ell~~~~~~~A~~~l~~~l~~~ 98 (1086)
.|++.....+.++.++.++.-+..|
T Consensus 96 -~~~~~~~~~~~~~~~~~l~~ll~~L 120 (201)
T 2ovj_A 96 -AFMEAAEITDEDNSIAAMYQAVGEL 120 (201)
T ss_dssp -HHHHHHHCSSHHHHHHHHHHHHHTS
T ss_pred -HHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 4667666666666666666555444
No 396
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=31.88 E-value=95 Score=29.72 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhccCchhhhhh----ccccHHHHHHHHhCCC---HH-------HHHHhhccC-cccccccccceehhhhh
Q 001396 7 DLVFLILQFLNEEGFTESAHI----FYFDMKFFEDMILDGK---WE-------DVEQYLSSF-TKVDDNRYSTKIYFEIR 71 (1086)
Q Consensus 7 evvrli~q~L~~~G~~~s~~~----~~~~~~~~~~~i~~g~---w~-------~~~~~l~~~-~~~~~~~~~~~~~~~i~ 71 (1086)
-+|.-++++|++.|+..-.-- ....++.+++.+-.|. +. .+-..|+.+ ..+|+.. +-+.+|
T Consensus 29 ~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreLPePL----i~~~l~ 104 (209)
T 2ee4_A 29 LFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPL----IPYSLH 104 (209)
T ss_dssp HHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHSSSCS----SCTTTH
T ss_pred hHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhCCCcc----CCHHHH
Confidence 357777899998886422111 3446777888776653 11 122222221 2344442 334555
Q ss_pred hhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001396 72 KQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 113 (1086)
Q Consensus 72 ~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll 113 (1086)
+ .|++.....+..+.++.++.-+..|...+...++.|..+|
T Consensus 105 ~-~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L 145 (209)
T 2ee4_A 105 P-ELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHL 145 (209)
T ss_dssp H-HHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHH
T ss_pred H-HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 4 4666666666666666676655555333444444444443
No 397
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=30.86 E-value=58 Score=31.43 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=48.3
Q ss_pred HHHHHHHhhhccCchhhhhh----ccccHHHHHHHHhCCC--------HHH---HHHhhccC-cccccccccceehhhhh
Q 001396 8 LVFLILQFLNEEGFTESAHI----FYFDMKFFEDMILDGK--------WED---VEQYLSSF-TKVDDNRYSTKIYFEIR 71 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~~----~~~~~~~~~~~i~~g~--------w~~---~~~~l~~~-~~~~~~~~~~~~~~~i~ 71 (1086)
+|.-++++|++.|+..-.-- ....++.|++.+-.|. |.+ +-..|+.+ ..+|+.. +-+.+|
T Consensus 38 ~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLPePL----l~~~l~ 113 (214)
T 3byi_A 38 FVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPL----FPYSFF 113 (214)
T ss_dssp HHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSSSCS----SCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCCCCC----CCHHHH
Confidence 56777788888886432111 4456888888887763 311 11222211 2444442 445555
Q ss_pred hhhhhhhcCCCCHHHHHHHHHhhcccc
Q 001396 72 KQNFFEALDGHDIAKALNILKKDLKDF 98 (1086)
Q Consensus 72 ~q~~~Ell~~~~~~~A~~~l~~~l~~~ 98 (1086)
+ .|++.....+..+.++.++.-+..|
T Consensus 114 ~-~~~~~~~~~~~~~~~~~l~~ll~~L 139 (214)
T 3byi_A 114 E-QFVEAIKKQDNNTRIEAVKSLVQKL 139 (214)
T ss_dssp H-HHHHHHTSSSHHHHHHHHHHHHHHS
T ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4 4777776666666666666554444
No 398
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=30.34 E-value=48 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhhccCchhh
Q 001396 2 SKLNKDLVFLILQFLNEEGFTES 24 (1086)
Q Consensus 2 ~~~~~evvrli~q~L~~~G~~~s 24 (1086)
+..+.+|...|+..|.+.||-..
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~ 40 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSK 40 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSS
T ss_pred CHHHHHHHHHHHHhcCCCCCCCC
Confidence 34567789999999999999743
No 399
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=29.63 E-value=56 Score=26.46 Aligned_cols=54 Identities=4% Similarity=0.020 Sum_probs=34.1
Q ss_pred HHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhcc
Q 001396 37 DMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLK 96 (1086)
Q Consensus 37 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~ 96 (1086)
-....|+|++|+..++....+..... ..+..+=+.|. ..|++++|+..+++-+.
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~---~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDYV---GTYYHLGKLYE---RLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHH---HcCCHHHHHHHHHHHHh
Confidence 34678999999998887644432211 11222333333 47999999999987543
No 400
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=28.89 E-value=58 Score=27.94 Aligned_cols=33 Identities=12% Similarity=-0.011 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001396 81 GHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114 (1086)
Q Consensus 81 ~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~ 114 (1086)
.|++++|+..+.+-+.- ...+.+-+..|+.++.
T Consensus 60 ~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 60 LMEFQRALDDCDTCIRL-DSKFIKGYIRKAACLV 92 (126)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Confidence 45556666655553321 1123444444554444
No 401
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=28.76 E-value=2.1e+02 Score=25.10 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=46.8
Q ss_pred HHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001396 37 DMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 115 (1086)
Q Consensus 37 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~ 115 (1086)
-....|+|++|+.++.+...+..+.. -.+..+=..|. ..|++++|+..+++-+.- .+.+.+-+..|+.++..
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~---~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQERDP---KAHRFLGLLYE---LEENTDKAVECYRRSVEL-NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH---HcCchHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 34678999999999887644433321 11222223333 479999999999986442 22467778888887764
No 402
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=28.44 E-value=2.5e+02 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=16.5
Q ss_pred eEEEeecCCCEEEEEeCCeEEEEEcc
Q 001396 800 PCFALSKNDAYLFSASGGVISLYIVM 825 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~dg~i~iwd~~ 825 (1086)
..+.+..||.+++...++. .+|...
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~ 77 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASH 77 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECC
T ss_pred EEEEEeCCccEEEECCCcE-EEEEec
Confidence 3577888888877655444 367654
No 403
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=27.33 E-value=77 Score=30.93 Aligned_cols=99 Identities=8% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHHHHhhhccCchhhhhh---ccccHHHHHHHHhCCC---HH---------HHHHhhccC-cccccccccceehhhhh
Q 001396 8 LVFLILQFLNEEGFTESAHI---FYFDMKFFEDMILDGK---WE---------DVEQYLSSF-TKVDDNRYSTKIYFEIR 71 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~~---~~~~~~~~~~~i~~g~---w~---------~~~~~l~~~-~~~~~~~~~~~~~~~i~ 71 (1086)
+|+-++++|++.|+.+-.-- ....++.|++.+-.|. ++ .+-..|+.+ ..+|+.. +-+.+|
T Consensus 40 iv~~~i~~i~~~gl~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePL----l~~~ly 115 (229)
T 3iug_A 40 VLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPL----LTYQLY 115 (229)
T ss_dssp HHHHHHHHHHHHCCSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCT----TCTTTH
T ss_pred HHHHHHHHHHHcCCCCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCC----cCHHHH
Confidence 67788899999997321111 4557888999988773 22 122222221 2344432 334444
Q ss_pred hhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001396 72 KQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114 (1086)
Q Consensus 72 ~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~ 114 (1086)
+ .|++.....+.++.+..++.-+..| .+..+.-|.+|+.
T Consensus 116 ~-~~~~~~~~~~~~~~~~~l~~ll~~L---P~~n~~~L~~L~~ 154 (229)
T 3iug_A 116 E-KFSDAVSAATDEERLIKIHDVIQQL---PPPHYRTLEFLMR 154 (229)
T ss_dssp H-HHHHHHTSSSHHHHHHHHHHHHTTS---CHHHHHHHHHHHH
T ss_pred H-HHHHHHHcCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHH
Confidence 3 4666666666677777777655554 2333444444443
No 404
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=26.95 E-value=71 Score=31.62 Aligned_cols=99 Identities=16% Similarity=0.277 Sum_probs=54.5
Q ss_pred HHHHHHHhhhccCchhhhhh----ccccHHHHHHHHhCCC---HH-------HHHHhhccC-cccccccccceehhhhhh
Q 001396 8 LVFLILQFLNEEGFTESAHI----FYFDMKFFEDMILDGK---WE-------DVEQYLSSF-TKVDDNRYSTKIYFEIRK 72 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~~----~~~~~~~~~~~i~~g~---w~-------~~~~~l~~~-~~~~~~~~~~~~~~~i~~ 72 (1086)
+|.-++++|++.|+..-.-- ....++.|++.+..|. +. .+-..|+.+ ..+|+.. +-+.+|+
T Consensus 71 iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK~fLReLPePL----l~~~l~~ 146 (246)
T 3fk2_A 71 FIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPL----VPYNMQI 146 (246)
T ss_dssp HHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHHHHHHHHSSSCS----SCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHhCCCcc----CCHHHHH
Confidence 67778888888886422111 4556788888877663 11 122222222 2445443 4455554
Q ss_pred hhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001396 73 QNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114 (1086)
Q Consensus 73 q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~ 114 (1086)
.|++.....+.++.++.++.-+..| .+..+.-|.+|+.
T Consensus 147 -~~~~~~~~~~~~~~~~~l~~ll~~L---P~~n~~~L~~L~~ 184 (246)
T 3fk2_A 147 -DLVEAHKINDREQKLHALKEVLKKF---PKENHEVFKYVIS 184 (246)
T ss_dssp -HHHHHTTCCSHHHHHHHHHHHHHTS---CHHHHHHHHHHHH
T ss_pred -HHHHHhccCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHH
Confidence 4677777777777677777655544 2333444444443
No 405
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=26.78 E-value=5.2e+02 Score=26.32 Aligned_cols=117 Identities=9% Similarity=0.118 Sum_probs=70.1
Q ss_pred CCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCC-------ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 838 PTATSLAFNPH--DNNVIAIGMDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 838 ~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~-------~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
..|.++...++ ++.+|+..+..|.++...+.. |.....+.. .+.+..+....+...++..+.+|.+..+.
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~ 178 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFN 178 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 44555543321 356788889999999888743 222333443 55677776666667788889999999888
Q ss_pred CCCCce-----eeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCC
Q 001396 909 VDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 960 (1086)
Q Consensus 909 ~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~ 960 (1086)
++.-.. .....+....+ ..+..+..-.++..+++ +..|..+...+..
T Consensus 179 ~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 179 SRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp GGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred HHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 765211 11112222211 24556555445554544 7888888888753
No 406
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=26.57 E-value=93 Score=29.56 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=54.0
Q ss_pred HHHHHHHhhhccCchhhhhh----ccccHHHHHHHHhCCC---HH-----HHHHhhccC-cccccccccceehhhhhhhh
Q 001396 8 LVFLILQFLNEEGFTESAHI----FYFDMKFFEDMILDGK---WE-----DVEQYLSSF-TKVDDNRYSTKIYFEIRKQN 74 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~~----~~~~~~~~~~~i~~g~---w~-----~~~~~l~~~-~~~~~~~~~~~~~~~i~~q~ 74 (1086)
+|.-++++|++.|+..-.-- ....++.+++.+-.|. |+ .+-..|+.+ ..+|+.. +-+.+| ..
T Consensus 29 ~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lLK~flreLp~pL----l~~~l~-~~ 103 (201)
T 3msx_B 29 PVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVLKDFLRNIPGSI----FSSDLY-DH 103 (201)
T ss_dssp HHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHHHHHHHTSTTTT----TTGGGH-HH
T ss_pred HHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHhCCCCC----CCHHHH-HH
Confidence 46667788888886522111 3456888888887664 21 222222222 2444442 334444 35
Q ss_pred hhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001396 75 FFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114 (1086)
Q Consensus 75 ~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~ 114 (1086)
|++.....+.++.++.++.-+..| .+..+.-|.+|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~ll~~L---P~~n~~~L~~L~~ 140 (201)
T 3msx_B 104 WVSVMDQGNDEEKINTVQRLLDQL---PRANVVLLRYLFG 140 (201)
T ss_dssp HHHGGGSSSHHHHHHHHHHHHTTS---CHHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHHC---CHHHHHHHHHHHH
Confidence 666777777777777777766655 3333444444443
No 407
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.05 E-value=36 Score=19.43 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHhhhc
Q 001396 4 LNKDLVFLILQFLNE 18 (1086)
Q Consensus 4 ~~~evvrli~q~L~~ 18 (1086)
.-+||++||-|+-.+
T Consensus 3 fMkDvlql~qQy~qs 17 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999888654
No 408
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=25.94 E-value=38 Score=37.44 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHHHHHhhhccCchhhhh--h--ccccHHHHHHHHhCC------------CHHHHHHhhccC-cccccccccceehhhh
Q 001396 8 LVFLILQFLNEEGFTESAH--I--FYFDMKFFEDMILDG------------KWEDVEQYLSSF-TKVDDNRYSTKIYFEI 70 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~--~--~~~~~~~~~~~i~~g------------~w~~~~~~l~~~-~~~~~~~~~~~~~~~i 70 (1086)
+|.-++++|++.|+..--- . ....++.|++.+..| +...+-.+|+.+ ..||+.. +-+.+
T Consensus 288 iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePL----i~~~l 363 (463)
T 3cxl_A 288 VVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPL----ITYDA 363 (463)
T ss_dssp HHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCS----SCTTT
T ss_pred eHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCC----CCHHH
Confidence 5677788888888653211 1 345567777766542 233333333322 3445443 44566
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHhhcccc
Q 001396 71 RKQNFFEALDGHDIAKALNILKKDLKDF 98 (1086)
Q Consensus 71 ~~q~~~Ell~~~~~~~A~~~l~~~l~~~ 98 (1086)
|+. |++.....+.++.++.|+.-+..|
T Consensus 364 y~~-~~~~~~~~~~~~~~~~l~~ll~~L 390 (463)
T 3cxl_A 364 YPK-FIESAKIMDPDEQLETLHEALKLL 390 (463)
T ss_dssp HHH-HHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHhC
Confidence 654 777777777666666666655544
No 409
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=25.02 E-value=34 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.8
Q ss_pred CCchhHHHHHHHHHhhhcc
Q 001396 1 MSKLNKDLVFLILQFLNEE 19 (1086)
Q Consensus 1 ~~~~~~evvrli~q~L~~~ 19 (1086)
|+..+++++..|+|||++.
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 5667899999999999754
No 410
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=24.51 E-value=1.3e+02 Score=25.06 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=44.1
Q ss_pred HHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001396 36 EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 115 (1086)
Q Consensus 36 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~ 115 (1086)
......|+|++|+.++.....+.... ..++...-.-+...+++++|+..+++-+.-. ..+..-+..|+.++..
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 34567999999999887763333221 1112222222356899999999999865422 2355656666665543
No 411
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=24.27 E-value=92 Score=26.57 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001396 37 DMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 113 (1086)
Q Consensus 37 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll 113 (1086)
-....|+|++|+..+.+...+...... + +.-+=..| ...|++++|+..+++-|+- .+.+.+-...|..+|
T Consensus 56 ~~~~~~~~~~A~~~~~~al~~~p~~~~--a-~~~lg~~~---~~~~~~~~A~~~~~~al~l-~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 56 CLTKLMEFQRALDDCDTCIRLDSKFIK--G-YIRKAACL---VAMREWSKAQRAYEDALQV-DPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH--H-HHHHHHHH---HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHC
T ss_pred HHHhhccHHHHHHHHHHHHHhhhhhhH--H-HHHHHHHH---HHCCCHHHHHHHHHHHHHH-CcCCHHHHHHHHHhc
Confidence 346789999999987766444333211 1 22222233 3579999999999985442 224566666666654
No 412
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.73 E-value=2.9e+02 Score=22.92 Aligned_cols=79 Identities=9% Similarity=0.129 Sum_probs=40.2
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccc
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 963 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~ 963 (1086)
..+.+..||.+++... ++ +|...+.. .+ .-..+.+..+|.+++...++...+|...+..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~----------~~------~~~~l~l~~dGNLVl~~~~~~~~vW~S~t~~- 80 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHG----------RG------VDCTLRLNNRGQLEIHSANSNTPVWVYPRSV- 80 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTT----------SC------SSCEEEECTTSCEEEECSSCSSCSEEESSSC-
T ss_pred EEEEEccCCeEEEECC-CC---EEECCccc----------CC------cCEEEEEcCCCcEEEEeCCCCEEEEEecccc-
Confidence 4566677777666422 22 77655421 00 1235677788887766444444566543210
Q ss_pred eeccccCCccCEEEEEEeCCCCEEEE
Q 001396 964 LKQWFPISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 964 ~~~~~~~h~~~v~~l~fs~dg~~l~s 989 (1086)
........+.+-+||.+++-
T Consensus 81 ------~~~~~~~~l~Lq~dGNlvly 100 (111)
T 3mez_A 81 ------NTVRGNYAATLGPDQHVTIY 100 (111)
T ss_dssp ------CCCSSCCEEEECTTSCEEEE
T ss_pred ------CCCCcCEEEEECCCCeEEEe
Confidence 00112334556666666554
No 413
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=22.67 E-value=1.3e+02 Score=25.33 Aligned_cols=73 Identities=11% Similarity=-0.017 Sum_probs=44.5
Q ss_pred HHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001396 36 EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 115 (1086)
Q Consensus 36 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~ 115 (1086)
...+..|+|++|+..++....+..... . +.| .+=..++ ..|+.++|+..+++-+.-- ..+.+-+..|+.++..
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~-~-a~~-~lg~~~~---~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPERE-E-AWR-SLGLTQA---ENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCH-H-HHH-HHHHHHH---HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCH-H-HHH-HHHHHHH---HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 566789999999998877633332211 1 222 2222333 4799999999999854422 2355556666665543
No 414
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=22.13 E-value=9.8e+02 Score=27.88 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=36.3
Q ss_pred CceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCC-C----CCCCCceEEEec-CCCEEEEEE
Q 001396 573 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAG-G----GLPENPRICFNK-NGTLLAVIA 635 (1086)
Q Consensus 573 ~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~----~~~~v~~v~~s~-~~~~l~~~~ 635 (1086)
+.|..++++|.. ..++++...+.|+.++-. ++.-..+... . ....+.+++++| +...++++.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 378999999874 567777766776666533 3322222211 1 013477899998 444555554
No 415
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.38 E-value=1.2e+02 Score=26.13 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=44.7
Q ss_pred HHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001396 36 EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 115 (1086)
Q Consensus 36 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~ 115 (1086)
......|+|++|+.++.....+..+.. ....++...-.=+...+++++|+..+++-+.-. ..+..-+..++.++..
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHH
Confidence 455789999999998877633332210 011222222222345899999999999855432 2345656666666544
Done!