Query 001397
Match_columns 1086
No_of_seqs 166 out of 423
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 23:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 2E-204 3E-209 1666.6 93.4 1041 1-1084 1-1064(1082)
2 COG5101 CRM1 Importin beta-rel 100.0 2.1E-64 4.6E-69 554.1 67.0 894 3-1084 12-1029(1053)
3 KOG4541 Nuclear transport rece 100.0 9.5E-54 2.1E-58 465.1 41.1 629 419-1085 34-743 (748)
4 KOG2020 Nuclear transport rece 100.0 5.2E-39 1.1E-43 391.4 60.8 790 4-965 10-891 (1041)
5 KOG2022 Nuclear transport rece 99.9 1.6E-14 3.5E-19 168.5 68.6 907 3-1085 5-976 (982)
6 PF08767 CRM1_C: CRM1 C termin 99.8 7.4E-17 1.6E-21 180.3 25.9 250 789-1084 45-315 (319)
7 KOG2021 Nuclear mRNA export fa 99.8 9.6E-13 2.1E-17 150.8 56.2 260 4-327 2-275 (980)
8 KOG2171 Karyopherin (importin) 99.2 2.3E-06 4.9E-11 105.0 53.1 148 3-190 2-151 (1075)
9 KOG2023 Nuclear transport rece 99.2 2.7E-06 5.8E-11 97.8 47.5 774 6-1072 11-867 (885)
10 PF08389 Xpo1: Exportin 1-like 99.0 4.9E-09 1.1E-13 104.8 13.4 147 130-303 1-148 (148)
11 KOG1992 Nuclear export recepto 98.6 0.0035 7.6E-08 74.8 52.4 178 6-225 3-194 (960)
12 KOG2081 Nuclear transport regu 98.6 7.4E-06 1.6E-10 93.7 22.9 309 24-411 2-322 (559)
13 KOG1991 Nuclear transport rece 98.4 0.015 3.3E-07 71.2 73.3 179 18-244 16-208 (1010)
14 KOG1241 Karyopherin (importin) 97.9 0.12 2.7E-06 61.8 46.4 219 17-310 12-248 (859)
15 PF03810 IBN_N: Importin-beta 97.8 5.4E-05 1.2E-09 66.2 7.2 56 26-81 1-68 (77)
16 COG5657 CSE1 CAS/CSE protein i 96.4 0.19 4.1E-06 61.5 19.7 147 1-189 1-155 (947)
17 KOG2274 Predicted importin 9 [ 95.8 7.5 0.00016 48.2 49.2 131 18-188 16-159 (1005)
18 KOG1993 Nuclear transport rece 94.6 15 0.00033 45.0 54.9 161 17-225 11-183 (978)
19 KOG4541 Nuclear transport rece 94.5 13 0.00028 43.6 24.2 23 567-590 356-378 (748)
20 COG5656 SXM1 Importin, protein 79.4 1.7E+02 0.0037 36.3 56.8 134 19-189 16-158 (970)
21 KOG1241 Karyopherin (importin) 64.3 3.7E+02 0.008 33.6 28.1 272 742-1038 237-544 (859)
22 KOG2171 Karyopherin (importin) 49.8 7.4E+02 0.016 32.6 36.3 212 740-966 177-422 (1075)
23 PF03224 V-ATPase_H_N: V-ATPas 49.0 2.5E+02 0.0055 31.6 13.3 172 28-247 93-269 (312)
24 PF12726 SEN1_N: SEN1 N termin 47.9 7.1E+02 0.015 31.8 22.4 163 902-1076 416-592 (727)
25 PF13646 HEAT_2: HEAT repeats; 41.1 86 0.0019 27.3 6.5 57 7-65 1-57 (88)
26 PF01603 B56: Protein phosphat 39.3 7E+02 0.015 29.3 15.7 178 7-212 135-326 (409)
27 PF12348 CLASP_N: CLASP N term 37.8 4.2E+02 0.0091 27.9 12.4 35 932-966 52-86 (228)
28 PF14500 MMS19_N: Dos2-interac 37.7 5.8E+02 0.013 27.9 18.6 73 116-190 41-115 (262)
29 PF14225 MOR2-PAG1_C: Cell mor 37.5 3.4E+02 0.0073 29.8 11.4 146 211-369 4-154 (262)
30 PF03378 CAS_CSE1: CAS/CSE pro 37.2 7.8E+02 0.017 29.2 20.7 100 690-802 45-148 (435)
31 PF05536 Neurochondrin: Neuroc 35.5 9.2E+02 0.02 29.6 18.9 234 36-340 3-245 (543)
32 PF01602 Adaptin_N: Adaptin N 35.4 8.6E+02 0.019 29.3 21.2 52 130-184 127-179 (526)
33 PF13646 HEAT_2: HEAT repeats; 32.3 1.6E+02 0.0036 25.4 6.8 55 7-63 33-87 (88)
34 PF14222 MOR2-PAG1_N: Cell mor 32.0 5.3E+02 0.012 31.7 13.1 145 901-1056 79-247 (552)
35 PF13513 HEAT_EZ: HEAT-like re 29.5 1.3E+02 0.0027 23.8 5.0 55 902-960 1-55 (55)
36 PF08623 TIP120: TATA-binding 27.8 1.5E+02 0.0032 30.1 6.1 55 903-964 42-96 (169)
37 PF12460 MMS19_C: RNAPII trans 25.8 1.1E+03 0.024 27.6 16.3 142 157-332 271-412 (415)
38 PF08506 Cse1: Cse1; InterPro 25.8 1.1E+03 0.023 27.3 25.7 50 900-956 320-369 (370)
39 PF02985 HEAT: HEAT repeat; I 25.4 1E+02 0.0022 21.2 3.3 30 934-963 1-30 (31)
40 PF12922 Cnd1_N: non-SMC mitot 24.9 1.4E+02 0.003 30.4 5.5 69 294-362 96-165 (171)
41 KOG4646 Uncharacterized conser 24.4 1.5E+02 0.0033 28.7 5.1 42 4-45 15-56 (173)
42 KOG4500 Rho/Rac GTPase guanine 24.1 3.3E+02 0.0072 31.7 8.5 66 850-926 153-222 (604)
43 PF04821 TIMELESS: Timeless pr 23.2 9.6E+02 0.021 26.3 12.1 60 773-834 45-106 (266)
44 KOG0889 Histone acetyltransfer 22.5 2.6E+03 0.057 31.8 17.9 114 840-966 668-800 (3550)
45 KOG0414 Chromosome condensatio 22.1 2.6E+02 0.0056 36.7 7.9 99 88-186 330-428 (1251)
46 PTZ00429 beta-adaptin; Provisi 21.7 1.2E+03 0.027 29.7 14.0 70 116-186 139-208 (746)
47 PF10521 DUF2454: Protein of u 21.2 1E+03 0.022 26.3 12.0 163 143-339 106-278 (282)
48 KOG1848 Uncharacterized conser 20.1 1.1E+03 0.024 32.0 12.7 163 869-1042 874-1053(1610)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-204 Score=1666.56 Aligned_cols=1041 Identities=50% Similarity=0.841 Sum_probs=996.4
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh-cccChhhhhh
Q 001397 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLD 79 (1086)
Q Consensus 1 ~~~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~-~~l~~~~~~~ 79 (1086)
|+++++||.+|+.+|.++|+.+|.+||+.|.+|.++|+++++|+.+|++++.||.++.|++.|.|.+.+ +.+|.+||.+
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrld 80 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLD 80 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 7799999999
Q ss_pred hhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCCh----hh
Q 001397 80 ISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD----RF 155 (1086)
Q Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~----~~ 155 (1086)
|| +|++||+.+++|++++||..++++++|+++|.||+|.. +|
T Consensus 81 ir----------------------------------~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F 126 (1082)
T KOG1410|consen 81 IR----------------------------------NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF 126 (1082)
T ss_pred HH----------------------------------HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchh
Confidence 99 99999999999999999999999999999999999864 78
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhh-----hhh
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLK-----SDV 230 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~-----~~~ 230 (1086)
|+.++++++|++.++.+|+++|+.||+.+++||++.+.+.+..+|||++.+|||+.|.+||.+++.+|+... ++.
T Consensus 127 Rd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~ 206 (1082)
T KOG1410|consen 127 RDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRA 206 (1082)
T ss_pred hhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHh
Confidence 999999999998778999999999999999999999999999999999999999999999999999999875 333
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhccc
Q 001397 231 ASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVR 310 (1086)
Q Consensus 231 ~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~ 310 (1086)
+..+..++|++.++||+|||+|++.||++||..+||+|.+||..+.|++++++||++|...+|+++..+|.||+|+||+|
T Consensus 207 q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvR 286 (1082)
T KOG1410|consen 207 QLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVR 286 (1082)
T ss_pred HhhHHHHHHHHHhhhccccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhc
Q 001397 311 RSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSW 390 (1086)
Q Consensus 311 ~s~f~~~~~~~~~l~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~~fT~~~l~~~ 390 (1086)
|++|++ .+|.+|++++++|++.++++++|++|+.+||+|||+++|+++||++.+|+++++|++||+.+|.||+.+++.|
T Consensus 287 RsLFN~-aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~w 365 (1082)
T KOG1410|consen 287 RSLFNG-AERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHW 365 (1082)
T ss_pred HHHhCC-HHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhh
Confidence 999965 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHHhhcccCCcCCCCcchhhhhHHHHHHHHHhhhhcccccccCCCCCCCCCCcHHHHHHHHhhhhhh
Q 001397 391 QWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYL 470 (1086)
Q Consensus 391 ~~~~~s~~~LL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi~srl~~~~~~~~ee~~e~~~~d~~~~~~~le~i~~l 470 (1086)
.|++||.+|||.+|.+|+.++||++++.|+.++.|+|+|.++||.||++.++.+++|+ .|+|+||.+...+++|+++++
T Consensus 366 efa~nSvyyLlt~WqRmvaSVPyvk~~~phlLd~y~PeIt~afi~SRl~sV~~ivrd~-~d~PLdd~~~~~q~le~l~~i 444 (1082)
T KOG1410|consen 366 EFAPNSVYYLLTLWQRMVASVPYVKNTEPHLLDTYCPEITKAFITSRLQSVEIIVRDG-LDDPLDDTGAVQQQLEQLATI 444 (1082)
T ss_pred hcccchhHHHHHHHHHHHhcCCcccCCChHHHhhhcHHHHHHHHHHHhhhhheecccC-CCCcchhhHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999988777766 689999999999999999999
Q ss_pred hccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHhccccccCCCccchhhhchHHHHHHH
Q 001397 471 CRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVL 550 (1086)
Q Consensus 471 ~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~ 550 (1086)
+||.|+.|+.+|.++||+..+.|++....+..++..+.+.|++|.|+|+++|.+++|+ .+.++.++++++|++|+++|+
T Consensus 445 cRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk-~t~~Std~~d~mDgEL~arvl 523 (1082)
T KOG1410|consen 445 CRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGK-TTATSTDEHDAMDGELSARVL 523 (1082)
T ss_pred hhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcce-ecccccchhhhhhhHHHHHHH
Confidence 9999999999999999999999998765544466777888999999999999999999 445678899999999999999
Q ss_pred HHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccC
Q 001397 551 QLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKC 630 (1086)
Q Consensus 551 ~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~ 630 (1086)
++++++|.+. +..+.+|++.|++||+++|+|+|+|++.+++ +|+|.+++|.+|+.|...++++|++||.+||++
T Consensus 524 ql~nlmdsr~-----~~~~n~rle~ail~f~eqFRk~YvgDQ~~rs-SkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~ 597 (1082)
T KOG1410|consen 524 QLVNLMDSRL-----PLKGNERLELAILHFLEQFRKAYVGDQIQRS-SKVYARLSEVLGITDESDVLGVIVGKILTNLKY 597 (1082)
T ss_pred HHHHhhhccc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc
Confidence 9999998755 4556799999999999999999999998875 679999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHhcccCCCCccccc---ccchhhHHHHHHHHHHHhcC--CCh
Q 001397 631 YTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEY---RCSRSRTTFYYTIGWLIFME--ESP 705 (1086)
Q Consensus 631 ~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~l~~~---~~~~~r~~~~~al~~l~~~~--~~~ 705 (1086)
|+..++|+..+++||.+|+.|++..|+++++|.|+.+++||++++|||++.. +..|+||+||.|+|++++.| +.+
T Consensus 598 w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede 677 (1082)
T KOG1410|consen 598 WGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDE 677 (1082)
T ss_pred ccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccH
Confidence 9999999999999999999999999999999999999999999999999866 66899999999999999987 457
Q ss_pred HHHHHhhHHHHHHHHHhc-cCCCcccccHHHHHHHHHHHHHhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCC
Q 001397 706 VKFKSSMDPLLQVFISLE-STPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDT 784 (1086)
Q Consensus 706 ~~~~~~l~pl~~~~~~l~-~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~ 784 (1086)
..|++||.|+++.|..+. .-+++.++.+++|..++|++||+||||.|.+.+.+|.++|+|+||.++|++...++.|.++
T Consensus 678 ~~fe~fm~PLt~~fe~v~~~~~nn~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~ 757 (1082)
T KOG1410|consen 678 DMFERFMLPLTDAFEGVLQVFQNNCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGC 757 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCC
Confidence 799999999999999775 2223569999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhcccceeeccCCChhhHHHHHHHHHHHHHHHHhhccCCC--cchhhhhhhhhHHHHHHHHHHhHh
Q 001397 785 PEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPN--AADIYAYKYKGMWICFTILARALA 862 (1086)
Q Consensus 785 ~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~~Lf~~~~~ll~~y~~~~l~~~~--~~~~~~e~~k~l~~ll~il~~~ls 862 (1086)
|++++|||||++|+++||+||+.|+.+||||++|||+++|++..||.++++.|. +...|+++||+|.+|+.+|+++++
T Consensus 758 p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~ 837 (1082)
T KOG1410|consen 758 PDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALS 837 (1082)
T ss_pred CccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999884 455799999999999999999999
Q ss_pred CCccccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhh
Q 001397 863 GNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGL 942 (1086)
Q Consensus 863 ~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl 942 (1086)
|+|||||||++|||+++.+++..+++|+++||..|+++|||+.++||.|+|.+++.|+.++.+|+++.|..++.||..|+
T Consensus 838 GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGL 917 (1082)
T KOG1410|consen 838 GNYVNFGVFRLYGDSALDDALQTFVKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGL 917 (1082)
T ss_pred cCccccceeeeeCchHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHhHHHHHHHHHHHHHHHhhccCCCC-----CChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcchh
Q 001397 943 KGLDTNISSQCAAAVDNLAAFYFNNITMGEAP-----TSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSR 1017 (1086)
Q Consensus 943 ~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~s~ 1017 (1086)
++.|+.|+..||.++|++++|+|+++.++..| ..|.+.+++.++++||+++++||+.++++++|+||++||++||
T Consensus 918 t~lDt~v~ssccsslD~i~tYlfk~itr~~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQWSlSR 997 (1082)
T KOG1410|consen 918 TSLDTIVSSSCCSSLDTIVTYLFKRITRSTKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQWSLSR 997 (1082)
T ss_pred chhhHHHHhHHHHHHHHHHHHHHHHHhccCCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccccccc
Confidence 99999999999999999999999998877666 4589999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001397 1018 PMLSLILISEQVFSDLKAQILTSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1084 (1086)
Q Consensus 1018 ~L~~LI~~~~~~f~~l~~~li~~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1084 (1086)
||++||++++++|..++.+|+++||+++|+++..||++||+||+.+++.||||+||+|+..||++|+
T Consensus 998 PlLgLILi~E~~fSdlk~~l~ssQp~dkqq~l~~cF~~LM~~ve~nL~~KNrD~FTQNLt~FRrdv~ 1064 (1082)
T KOG1410|consen 998 PLLGLILINEKYFSDLKASLTSSQPYDKQQDLDMCFTNLMEGVERNLTVKNRDRFTQNLTRFRRDVA 1064 (1082)
T ss_pred hhhHHHhhhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-64 Score=554.11 Aligned_cols=894 Identities=15% Similarity=0.192 Sum_probs=612.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
+++.||++++.+|.|.+ .++++||++|++|++.||+|.++.+||++|+.|.++|.|++.|.++|++ +.+|.++|.+|
T Consensus 12 diallDkVVttfyqg~g-~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 12 DIALLDKVVTTFYQGDG-RKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred CHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 57889999999998775 7889999999999999999999999999999999999999999999988 78999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhh
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRF 155 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~v~~~l~~~~a~i~K~~w~~~~~~ 155 (1086)
| +|+++.+++++.+. ++++.+++..+++.|.|++||.+||
T Consensus 91 R----------------------------------nyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP- 135 (1053)
T COG5101 91 R----------------------------------NYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWP- 135 (1053)
T ss_pred H----------------------------------HHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-
Confidence 9 99999999987553 3999999999999999999999999
Q ss_pred hhHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 001397 156 RDLVKESTNFLSQ--ATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASR 233 (1086)
Q Consensus 156 ~~~i~~v~~~~~~--~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~ 233 (1086)
+||+++++..+. +-+++.++.|++|++.|++||..+++.-...|.|- ++.-+ +++||.+|-++|+...+ ++
T Consensus 136 -~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkN--qm~~E-F~qIF~lc~qiLE~~~~---~S 208 (1053)
T COG5101 136 -TFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKN--QMKIE-FPQIFGLCKQILEYSRD---ES 208 (1053)
T ss_pred -hhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHH--HHhhh-HHHHHHHHHHHHHhcCC---hH
Confidence 899999876531 12488999999999999999988875555555444 45544 99999999999998765 67
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccc-c
Q 001397 234 LQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRR-S 312 (1086)
Q Consensus 234 l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~-s 312 (1086)
+++++|+.+.++|.|.+.++ +++++.++++.+.+. ..|..+..+++||++++++.+ +
T Consensus 209 Li~ATLesllrfl~wiPl~y---------------------IfeTnIieLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~p 266 (1053)
T COG5101 209 LIEATLESLLRFLEWIPLDY---------------------IFETNIIELVLEHFN-SMPDTRVATLSCLTEIVDLGRHP 266 (1053)
T ss_pred HHHHHHHHHHHHHhhCchhH---------------------HHHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHhhccCc
Confidence 99999999999999999987 678889999988876 668899999999999999974 3
Q ss_pred CCCChHHH--HHHHHHHHHHHHH-HHhccc-------cC--CCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHH
Q 001397 313 LFTNDAAR--SKFLAHLMTGTKE-ILQTGQ-------GL--ADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVA 380 (1086)
Q Consensus 313 ~f~~~~~~--~~~l~~~~~~i~~-il~~~~-------~l--~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~ 380 (1086)
..+...+| .-+++.++..... .++... +. +++...+.++.+++.+.+.| ++.|..-+.-+..++. .
T Consensus 267 q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~-~~lLE~~e~~e~llna-h 344 (1053)
T COG5101 267 QENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVY-ISLLEAREMAENLLNA-H 344 (1053)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHH-HHHhcChhHHHHHHHH-H
Confidence 33222122 2233333333321 111100 11 22334445666666666665 3333332211111111 1
Q ss_pred HHHHHhhhhcccc-cCcHHHHHHHHHHhhcccCCcCC---------C-------------Ccc-----hhhh--h---HH
Q 001397 381 EFTLKSLQSWQWA-SSSVYYLLGLWSRLVTSVPYLKG---------D-------------APS-----LLDE--F---VP 427 (1086)
Q Consensus 381 ~fT~~~l~~~~~~-~~s~~~LL~~W~~lv~~~~~~~~---------~-------------~~~-----~l~~--~---~~ 427 (1086)
.. .++..... .+-++..|++|+++|.++ |.+- + .|. .+.. | ..
T Consensus 345 ~Y---LiqiSrInereiFkt~leyW~klVadL-y~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ils 420 (1053)
T COG5101 345 GY---LIQISRINEREIFKTALEYWNKLVADL-YSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILS 420 (1053)
T ss_pred HH---hhhhhhccHHHHHHHHHHHHHHHHHHH-HHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHH
Confidence 11 12333332 356788999999999876 3210 0 111 1111 2 22
Q ss_pred HHHHHHHhhhhccccccc--CCCCCCC------CCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhc
Q 001397 428 KITEGFITSRFNSVQAGF--PDDLSDN------PLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARM 499 (1086)
Q Consensus 428 ~I~~~yi~srl~~~~~~~--~ee~~e~------~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~ 499 (1086)
++.-. +..+|..|++++ ++|.+|- +.|-.+.++.+++++.+|+++...+|..++...+... +.+
T Consensus 421 qLrlv-lienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq-------~dg 492 (1053)
T COG5101 421 QLRLV-LIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQ-------LDG 492 (1053)
T ss_pred HHHHH-HHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHH-------hcC
Confidence 23333 666788998873 3443332 2233456678999999999999999999999888753 346
Q ss_pred CCCCchhhHHHHHHHHHHHH-HHHHHhccccccCCCccchhhhchHHHHHHHHHHhhcc-------ccccccc--ccccc
Q 001397 500 QTGDKSEISVIEAKLAWIVH-IIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTD-------SGLHSQR--YCELS 569 (1086)
Q Consensus 500 ~~~~~~~l~~~~e~L~Wli~-i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~-------~~~~~~~--~~~~s 569 (1086)
.+|+++++| +|||+|+ |+|++ +|..|+ +.++.++..|+.+|. ++.-+++ |.+|+
T Consensus 493 ~EWsw~nlN----tLcWAIGSISGam----------sE~~Ek--rF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ 556 (1053)
T COG5101 493 KEWSWNNLN----TLCWAIGSISGAM----------SEVNEK--RFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ 556 (1053)
T ss_pred CccchhhHh----HHHHHHhcccchh----------hhHHHH--HHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc
Confidence 688999988 8999996 66766 555565 567888777776652 2334565 88999
Q ss_pred hHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001397 570 KQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELL-GLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLEL 648 (1086)
Q Consensus 570 ~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~-G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l 648 (1086)
|||++++.|.|++.. ++|+|++|+|.+ |++||+ ||+|++.+..|-.+|-..
T Consensus 557 YpRFLkahw~FLkTV------------v~KLFEFMhE~HEGvqDMA--CDtFiKIvqKC~~hFv~Q-------------- 608 (1053)
T COG5101 557 YPRFLKAHWSFLKTV------------VKKLFEFMHEDHEGVQDMA--CDTFIKIVQKCPVHFVTQ-------------- 608 (1053)
T ss_pred chHHHHHHHHHHHHH------------HHHHHHHHhhhhhhHHhhh--HHHHHHHHHhCcHHHhhc--------------
Confidence 999999999988732 489999999999 999999 999997776664433200
Q ss_pred hcchhhhhhhhcchhHHHHHHhcccCCCCcccccccchhhHHHHHHHHHHHhcCCC----hHHHHHhhHHHHHHHHHhc-
Q 001397 649 ASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEES----PVKFKSSMDPLLQVFISLE- 723 (1086)
Q Consensus 649 ~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~l~~~~~~~~r~~~~~al~~l~~~~~~----~~~~~~~l~pl~~~~~~l~- 723 (1086)
+.=-..|.+.+++++....+-++ + +.+.++||+|+|.++...++ ....-.+|+-++..|..+.
T Consensus 609 -------q~gesEpFI~~Iirnl~ktT~dL-~----pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~ 676 (1053)
T COG5101 609 -------QEGESEPFIVYIIRNLPKTTGDL-E----PQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVI 676 (1053)
T ss_pred -------CCCCCCcHHHHHHHhhhhhcccC-C----hHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 00113567788888876544333 2 45678999999999976542 4467888998999999885
Q ss_pred ---cCCCcccccHHHHHHHHHHHHHhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhh
Q 001397 724 ---STPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVL 800 (1086)
Q Consensus 724 ---~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~ 800 (1086)
.++ ..+.+++..+-..+.+...-..|.+... -+||..-..+...+..|..-+..+ ++.+.
T Consensus 677 qa~~n~-~~L~d~~tvki~an~~ktnVa~ctslg~---------~fyPq~~~~y~~ml~ly~avs~~I-------s~~va 739 (1053)
T COG5101 677 QADENI-NRLSDTMTVKIDANKMKTNVAKCTSLGY---------RFYPQTCSSYCIMLFLYFAVSFDI-------SNSVA 739 (1053)
T ss_pred Hhhhhh-hhhcchhHHHHHHHHHHHHHHHHhhccc---------ccchHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 233 4556666666667777777777776643 234443333333333332111111 11111
Q ss_pred cccceeeccCCChhhH-HHHHHHHHHHHHHHHhh-----------------------ccCCCcchhhhhhhhhHHHHHHH
Q 001397 801 NKAQRLTFDSSSPNGI-LLFREVSKLIVAYGSRV-----------------------LSLPNAADIYAYKYKGMWICFTI 856 (1086)
Q Consensus 801 nk~~rl~f~~~s~~~~-~Lf~~~~~ll~~y~~~~-----------------------l~~~~~~~~~~e~~k~l~~ll~i 856 (1086)
.. +-|+-.....+|. .+.+++.+++.+|.++. -++|..+ +++.+.....+.+-
T Consensus 740 ae-g~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~DY~nNvPdar--daevLnl~ttiV~~ 816 (1053)
T COG5101 740 AE-GLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFDYKNNVPDAR--DAEVLNLGTTIVRN 816 (1053)
T ss_pred hc-ccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCccc--cHHHHHHHHHHHHH
Confidence 11 0111111223333 45555555555554211 1344444 55666655555555
Q ss_pred HHHhHhCCccccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHH
Q 001397 857 LARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVG 936 (1086)
Q Consensus 857 l~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~ 936 (1086)
+.+.+. ...+-++..+|.|++.|...|+-.||+++++||.|++.+...++..+.++|++.|+.+..
T Consensus 817 v~~~i~--------------~~~~l~l~svf~ctl~mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~n 882 (1053)
T COG5101 817 VESVIY--------------LQRELFLISVFICTLIMIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYN 882 (1053)
T ss_pred HHHHhh--------------hhhHHHHHHHHhhhHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHH
Confidence 554443 125567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcch
Q 001397 937 SLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLS 1016 (1086)
Q Consensus 937 sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~s 1016 (1086)
+|.|+++|..++|+..++.++..+.+.+.. .| .|....+ +.+.+...+..++-++...|++..++--
T Consensus 883 ti~wsfkhi~RDv~~~gLnill~l~kn~~~---mg----~~~~n~F------~~~yy~s~l~~il~vltDsDhKsgF~~Q 949 (1053)
T COG5101 883 TILWSFKHINRDVSDLGLNILLILFKNCHE---MG----VPFINQF------YAQYYMSTLENILGVLTDSDHKSGFDQQ 949 (1053)
T ss_pred HHHHHHHhccchHhhhhhHHHHHHHHHHHH---hC----CchHHHH------HHHHHHHHHHHHHeeeeccchhccchHH
Confidence 999999999999999999988888877753 12 2443333 2345777788888888888988876443
Q ss_pred hhhHH-----------------HHhcCHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHH
Q 001397 1017 RPMLS-----------------LILISEQVFSDLKAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTV 1078 (1086)
Q Consensus 1017 ~~L~~-----------------LI~~~~~~f~~l~~~li~-~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~ 1078 (1086)
..|++ =|--+.-...++...+.. +.|.-.++.+..--..|.+- + ..-.-|...+..
T Consensus 950 ~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~sfp~it~e~v~~f~~~l~~~-~-----~d~~ifk~~~~d 1023 (1053)
T COG5101 950 CLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVKSFPNITQESVKIFSVGLFEL-C-----GDDEIFKEHVED 1023 (1053)
T ss_pred HHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHhhcCcccHHHHHHHHHHHHHH-h-----CcHHHHHHHHHH
Confidence 43333 222233345555544443 34433333333322223220 1 112567777777
Q ss_pred HHHHhh
Q 001397 1079 FRHEFR 1084 (1086)
Q Consensus 1079 F~~~vr 1084 (1086)
|+..|.
T Consensus 1024 f~vkv~ 1029 (1053)
T COG5101 1024 FRVKVY 1029 (1053)
T ss_pred Hhhhee
Confidence 776654
No 3
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-54 Score=465.06 Aligned_cols=629 Identities=14% Similarity=0.123 Sum_probs=489.4
Q ss_pred cchhhhhHHHHHHHHHhhhhccccc--------c-cCCCC--C--CCCCCcHHHHHHHHhhhhhhhccchhhHHHHHHHh
Q 001397 419 PSLLDEFVPKITEGFITSRFNSVQA--------G-FPDDL--S--DNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINT 485 (1086)
Q Consensus 419 ~~~l~~~~~~I~~~yi~srl~~~~~--------~-~~ee~--~--e~~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~l 485 (1086)
...+-.+..+|+..|+++|+.++.+ | .++|+ + ++.+||.+...|++...+.++|...+.+.+.. .+
T Consensus 34 ~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~l 112 (748)
T KOG4541|consen 34 EGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTGVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-AL 112 (748)
T ss_pred hhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcCCCccCCcchhHHHHHHhcCchHHHHHHHHH-HH
Confidence 3566778889999999999998755 1 12221 1 23467777777888888999999998887776 67
Q ss_pred HHHHHHHHHH----H---hhcCCC---CchhhHHHHHHHHHHHHHHHHHhccccccC-----------------------
Q 001397 486 MEPILQSYTE----R---ARMQTG---DKSEISVIEAKLAWIVHIIAAIVKIKQCTG----------------------- 532 (1086)
Q Consensus 486 l~~~~~~~~~----~---~~~~~~---~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~----------------------- 532 (1086)
++....++.. . ....|+ ....+..+.|+.||++++.|.-+.|+...+
T Consensus 113 le~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~ 192 (748)
T KOG4541|consen 113 LEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMANSTDEETWSYEARDILLDTYTTLHTSKMDGSG 192 (748)
T ss_pred HHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCccCCCchHhhhhhhhcccccCCC
Confidence 7765433321 1 111232 223456677899999999999987653110
Q ss_pred ----CC-ccchhhhc---------h--HHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccc
Q 001397 533 ----CS-LESQEVLD---------A--ELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHS 596 (1086)
Q Consensus 533 ----~~-~~~~~~~d---------~--~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~ 596 (1086)
.+ +.++..-+ . .+.+++++.-..+.....+..-..+|| .+.+.+.||+.+|.++|....
T Consensus 193 ~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a~~~~l~Sp-~l~~~l~rfl~a~~~~~~~~~---- 267 (748)
T KOG4541|consen 193 GNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSAMDERLGSP-ALIARLARFLDATIPFLAKLF---- 267 (748)
T ss_pred cccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhhHHHHHh----
Confidence 01 11111100 0 122223333333333332222245774 599999999999999998653
Q ss_pred hHHHHHHHHHHhCC------CchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHh
Q 001397 597 SKQLYARLSELLGL------HDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVAN 670 (1086)
Q Consensus 597 ~~~~~~~l~~~~G~------~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~ 670 (1086)
++.|..++..+|. +...+.+.++++|+..++..|+++++++.+|++++-+++.+.+.....+.++.|+.+.+.
T Consensus 268 -~~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq 346 (748)
T KOG4541|consen 268 -SDHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQ 346 (748)
T ss_pred -HHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHH
Confidence 6789999886644 455799999999999999999999999999999999999988788888899999999988
Q ss_pred cccCCCC--cccccccchhhHHHHHHHHHHHhc--C--CChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHH
Q 001397 671 HTREHFP--FLEEYRCSRSRTTFYYTIGWLIFM--E--ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMR 744 (1086)
Q Consensus 671 ~~~~~~~--~l~~~~~~~~r~~~~~al~~l~~~--~--~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~ 744 (1086)
..+...| +++ +..|..++++|...-+. + ...++|...++|+.+||-....++ +..+++.+|+.-+.
T Consensus 347 ~~s~~~~l~i~s----~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~----~q~~~~~~Ii~~l~ 418 (748)
T KOG4541|consen 347 CLSAEMRLSIFS----PPLMEALMKALVLWGFAYLDLEEECNLGSNKLQPLPSRFFTYFNQH----NQGKFVLDIIVRLS 418 (748)
T ss_pred HhccCCcccccC----chHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccHHHHHHHhccc----chhhHHHHHHHHHH
Confidence 8664333 333 45778999998655433 3 456799999999999999887665 56788899999999
Q ss_pred HhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeeccCCChhhHHHHHHHHH
Q 001397 745 DLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSK 824 (1086)
Q Consensus 745 ~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~~Lf~~~~~ 824 (1086)
++.|++.|.+... ...+|++++-.. ..+..++..|.+.++++..|+..+.+++.... +..+..+| .+.+|..|.+
T Consensus 419 ~~~g~a~a~q~d~-~~~Lf~fL~~~~-~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~--~y~~~e~~-~~~ly~sclq 493 (748)
T KOG4541|consen 419 LTSGTAYAGQKDL-QRSLFQFLVLSA-YGCRGLMASNQYVKDLVAHITSSLVDVSNKSD--LYNLAEQP-DIILYVSCLQ 493 (748)
T ss_pred Hhccccccccchh-HHHHHHHHHHHH-hhhhhHHHHhhccHHHHHHHHHHHHHhhhhhh--hhccccCh-hHHHHHHHHH
Confidence 9999999998855 799999999995 79999999999999999999999999998543 44444455 6679999999
Q ss_pred HHHHHHHhhccCCC-cchhhhhhhhhHHHHHHHHHHhHhCCcccccccc-ccCCCcHHHHHHHHHHHhhccChhhHHhhH
Q 001397 825 LIVAYGSRVLSLPN-AADIYAYKYKGMWICFTILARALAGNYVNFGVFE-LYGDRALSDALDIALKMTLSIPLADILAFR 902 (1086)
Q Consensus 825 ll~~y~~~~l~~~~-~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~-~y~D~~~~~~l~~~l~l~l~ip~~dll~yP 902 (1086)
+++.|+....+.+. ...+|+|+|.++.+++++|+|.+++||++||.-. .++. ..+++..++++++.++..++++||
T Consensus 494 l~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~~~s~e~~~~~G--~a~VV~~gl~~ilplm~~~lLk~P 571 (748)
T KOG4541|consen 494 LERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFSSDSIETQSTNG--IAQVVYFGLHIILPLMTLELLKYP 571 (748)
T ss_pred HHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhhccccccccccC--cceEEEeeHHHHHHHHHHHHHhch
Confidence 99999987666653 3456999999999999999999999999998743 3321 256777888988999999999999
Q ss_pred HhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcC-CChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHH
Q 001397 903 KLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKG-LDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAIN 981 (1086)
Q Consensus 903 kl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~-~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 981 (1086)
|+|.+||+++.+||+..|++++++|.+.++.++.|+..|++. ...+....|.+++-++++-.-|.++. ++
T Consensus 572 ~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcT---------qn 642 (748)
T KOG4541|consen 572 KLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCT---------QN 642 (748)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhcccccccccccc---------cc
Confidence 999999999999999999999999999999999999999994 44555566666666666544332221 12
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhccCCCchh--cchhhhHHHHhcCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHh
Q 001397 982 LARHIVECPTLFPEILKTLFEIVLFEDCGNQW--SLSRPMLSLILISEQVFSDLKAQILTSQP-VDQHQRLSVCFDKLMA 1058 (1086)
Q Consensus 982 l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~--~~s~~L~~LI~~~~~~f~~l~~~li~~q~-~~~~~~l~~aF~~L~~ 1058 (1086)
++ ++ +.+||+++|+++++++|+++. .+++|||+||||+|..|++++++|+++|. |..++||+.||++||.
T Consensus 643 la-fL------~~efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~skq~np~~~qrLa~Af~~Lt~ 715 (748)
T KOG4541|consen 643 LA-FL------SREFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNELISKQANPNFKQRLANAFQVLTT 715 (748)
T ss_pred HH-HH------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhc
Confidence 22 22 456899999999999999987 77999999999999999999999999988 9999999999999998
Q ss_pred -hhhcccChhhHHHHHHHHHHHHHHhhc
Q 001397 1059 -DVARSLDSKNRDKFTQNLTVFRHEFRV 1085 (1086)
Q Consensus 1059 -~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1085 (1086)
+-.+++||+||.+|++|+..|+.+|-|
T Consensus 716 sn~~psldR~~~~~Frk~le~Fl~~V~G 743 (748)
T KOG4541|consen 716 SNQLPSLDRLNYQRFRKNLENFLVEVLG 743 (748)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHhhc
Confidence 455669999999999999999999865
No 4
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-39 Score=391.37 Aligned_cols=790 Identities=15% Similarity=0.207 Sum_probs=535.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhhh
Q 001397 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDIS 81 (1086)
Q Consensus 4 ~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i~ 81 (1086)
.+-+++++..++.-+++++|.+|++++.+|+..++.|.+|..||+.++++.++|||++.|+.+|+. +.+|..+|.++|
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk 89 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLK 89 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHH
Confidence 456777777777547789999999999999999999999999999999999999999999999988 789999999999
Q ss_pred hccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhhh
Q 001397 82 NSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFR 156 (1086)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~v~~~l~~~~a~i~K~~w~~~~~~~ 156 (1086)
+|++..+...+++. .+++++|++..++.|+||.|+..|+
T Consensus 90 ----------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp-- 133 (1041)
T KOG2020|consen 90 ----------------------------------NYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWP-- 133 (1041)
T ss_pred ----------------------------------HHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcc--
Confidence 99999999887776 5899999999999999999999998
Q ss_pred hHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 001397 157 DLVKESTNFLSQA--TSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRL 234 (1086)
Q Consensus 157 ~~i~~v~~~~~~~--~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l 234 (1086)
+|+.++.+.+..+ ..++.++.+++|++.|++|++..+......|.+. ..+. .+..||++|..++.+... . +
T Consensus 134 ~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~--~~~~-~f~~i~~l~~~~~~~a~~---~-~ 206 (1041)
T KOG2020|consen 134 TFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKN--LLEN-EFQQIFTLCSYIKEKANS---E-L 206 (1041)
T ss_pred hhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHH--HhhH-HHHHHHHHHHHHHhhhhh---H-H
Confidence 8999998876422 2378899999999999999998865555555555 3444 588999999998877654 3 8
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCC
Q 001397 235 QELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLF 314 (1086)
Q Consensus 235 ~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f 314 (1086)
+.+++..+..+++|++.++ +.+.+.+..+...+. ..+.++..+++||.++++..++.+
T Consensus 207 ~~atl~tl~~fl~wip~~~---------------------I~~tn~l~~~l~~~l-n~~~~r~~al~CL~ei~s~~~~~~ 264 (1041)
T KOG2020|consen 207 LSATLETLLRFLEWIPLGY---------------------IFETNILELLLNKFL-NAPELRNNALSCLTELLSRKRSIY 264 (1041)
T ss_pred HHHHHHHHHHHhhcccHHH---------------------HHHhhhHHHHHHhcc-chHHHHHHHHHHHHHHHhccccch
Confidence 8999999999999999887 444555666665543 468899999999999999988754
Q ss_pred CChHHHHHHHHHHHHHHHHHHhc---c---ccC--CCc-hhHHHHHHHHhhhhhhcchhhhhcc-cChHHHHHHHHHHHH
Q 001397 315 TNDAARSKFLAHLMTGTKEILQT---G---QGL--ADH-DNYHEYCRLLGRFRVNYQLSELVNV-EGYSDWIQLVAEFTL 384 (1086)
Q Consensus 315 ~~~~~~~~~l~~~~~~i~~il~~---~---~~l--~~~-~~~~~~c~ll~rl~~~~~l~~L~~~-~~~~~fi~~l~~fT~ 384 (1086)
+..-..++...+..+..+... + .+. .++ .....++.+++.+...| ..-+... ...+..+....
T Consensus 265 --~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~-~~lle~~~~~~~~~~~~~~---- 337 (1041)
T KOG2020|consen 265 --ERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQH-IALLESSLSQRPVLLEALL---- 337 (1041)
T ss_pred --hHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHH-HHHHcCchhhhhHHHHHHH----
Confidence 233345555555553322221 1 112 233 23334788888887776 3333331 11122222222
Q ss_pred Hhhhhccc-ccCcHHHHHHHHHHhhcccCCcCCCCc-----ch-----------h--hhhHHHHH--HHHHhhhhccccc
Q 001397 385 KSLQSWQW-ASSSVYYLLGLWSRLVTSVPYLKGDAP-----SL-----------L--DEFVPKIT--EGFITSRFNSVQA 443 (1086)
Q Consensus 385 ~~l~~~~~-~~~s~~~LL~~W~~lv~~~~~~~~~~~-----~~-----------l--~~~~~~I~--~~yi~srl~~~~~ 443 (1086)
.++..... ..+.++.++++|..++.+..|. ++| .. + +.|....+ +..+..+|.+|++
T Consensus 338 ~li~i~~~~~se~~~~~ld~W~~lv~~l~~~--~~~ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~ 415 (1041)
T KOG2020|consen 338 ELILISTIEPSEIFKICLDYWNKLVADLYYN--KPPLLQLSTTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEE 415 (1041)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhhhcc--cccccccccccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 22222222 2356777999999999987554 111 00 0 11111111 3446678889988
Q ss_pred cc--CCCCCC---CCCCc---HHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Q 001397 444 GF--PDDLSD---NPLDN---VELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLA 515 (1086)
Q Consensus 444 ~~--~ee~~e---~~~~d---~~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~ 515 (1086)
+. ++|.++ +...| ...+...++...+++.++..++..++...+...++. ..+++..++ ++|
T Consensus 416 vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~~-------~~~~~~~ln----~l~ 484 (1041)
T KOG2020|consen 416 VLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLDG-------DEWSLHNLN----RLC 484 (1041)
T ss_pred eeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhhH-------HHHhhhhhh----hHH
Confidence 74 233222 11222 234458899999999999999999999886654432 122445555 899
Q ss_pred HHHH-HHHHHhccccccCCCccchhhhchHHHHHHHHHHhhcccccc-------ccc--ccccchHHHHHHHHHHHHHhh
Q 001397 516 WIVH-IIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLH-------SQR--YCELSKQRLDRAILTFFQHFR 585 (1086)
Q Consensus 516 Wli~-i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~-------~~~--~~~~s~~rl~~a~l~Fl~~~~ 585 (1086)
|.++ ++|+++ +..+ +..++.++..+++++..... ++| |.++++||+.++.+.|++
T Consensus 485 ~ai~sisg~~~----------e~~e--~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~Lk--- 549 (1041)
T KOG2020|consen 485 WAIGSISGRML----------EDME--KKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLK--- 549 (1041)
T ss_pred HHHHHHHhhhH----------HHHH--HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHHH---
Confidence 9996 777765 1122 24577777777777644322 233 566789999999877775
Q ss_pred hHhhccccccchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhH
Q 001397 586 KSYVGDQAMHSSKQLYARLSELL-GLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTI 664 (1086)
Q Consensus 586 ~~yl~~~~~~~~~~~~~~l~~~~-G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~ 664 (1086)
++ ..+++++|++.+ |++||+ ||+|++.+..+..+|- + ....-..|.+
T Consensus 550 -t~--------~~~L~efmhe~h~gvqdma--cd~F~~ii~~~~~~fv-----~----------------~~~~e~~~fv 597 (1041)
T KOG2020|consen 550 -TV--------VHKLFEFMHETHEGVQDMA--CDTFIKIIQKCKRHFV-----I----------------TQLGETKPFV 597 (1041)
T ss_pred -HH--------HHHHHHHHhhhhHHHHhhh--HHHHHHHHHhhhhhhe-----e----------------ecccccccch
Confidence 33 378999999999 999999 9999999988887651 0 1112234566
Q ss_pred HHHHHhcccCCCCcccccccchhhHHHHHHHHHHHhcC----CChHHHHHhhHHHHHHHHHhccC-C--CcccccHHHHH
Q 001397 665 KFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFME----ESPVKFKSSMDPLLQVFISLEST-P--DSMFRTDAVKC 737 (1086)
Q Consensus 665 ~~Ll~~~~~~~~~~l~~~~~~~~r~~~~~al~~l~~~~----~~~~~~~~~l~pl~~~~~~l~~~-~--~~~~~~~~~~~ 737 (1086)
..++.+.+....++- +.+|+.+|++++.++..+ ...++..++|.-.+..|..+..+ + ...+..++...
T Consensus 598 ~~~~~~l~~i~~~l~-----~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~ 672 (1041)
T KOG2020|consen 598 GELLLNLTAITEDLQ-----PQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVK 672 (1041)
T ss_pred HHHhhcccchhcCch-----HHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHH
Confidence 677666544332221 578899999999554433 12456777887788888887532 2 25566667666
Q ss_pred HHHHHHHHhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCCchhH------------------------HHHHH
Q 001397 738 ALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVT------------------------TPLLK 793 (1086)
Q Consensus 738 ~ii~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~------------------------~~iLk 793 (1086)
.+..++..+..++.+..+ +|....+.+++.. +..|+.++..+ ..+++
T Consensus 673 s~~~i~~~~~~~~~sl~~--~f~~~~~~~~~d~-------~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~ 743 (1041)
T KOG2020|consen 673 SLLNILKTNSRALTSLGS--TFVPQLGKIYLDM-------LQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILK 743 (1041)
T ss_pred HHHHHHHhHHHHHHhcCc--ccccccccccHHH-------HHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 677777777777776654 2334444444442 33333333222 13333
Q ss_pred HHHHHhhcccceeeccCCChh-hH-HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccc
Q 001397 794 FMAEFVLNKAQRLTFDSSSPN-GI-LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVF 871 (1086)
Q Consensus 794 l~~e~v~nk~~rl~f~~~s~~-~~-~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~ 871 (1086)
++..+...- ...+- +. .+.-.+...+-.|.. ++|..+ ...+..+..++.+.++ .++.
T Consensus 744 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fd~~~---nvPd~r------~~~vl~l~~~iv~~Lg-~~i~---- 802 (1041)
T KOG2020|consen 744 LLETFISKS-------EQRDLYLLMLVPPLLDAVLFDYLD---NVPDYR------ENEVLSLNATIVPKLG-EFIP---- 802 (1041)
T ss_pred HHHhccCcc-------cchhHHHHhhhhHHHHHHHHHHHc---cCcchh------cchHHHhhhhhhhhhh-hHhh----
Confidence 333333210 00000 00 111112222222221 233222 1222233444444332 2221
Q ss_pred cccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHh
Q 001397 872 ELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISS 951 (1086)
Q Consensus 872 ~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~ 951 (1086)
..++.+...++++.+.|...|...||+++..||.++++++-.++..+.++|++.++.+.+++.|.++|..++|+.
T Consensus 803 -----~~~~~i~~~v~~c~l~m~~~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~ 877 (1041)
T KOG2020|consen 803 -----AELPLINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAE 877 (1041)
T ss_pred -----hhccHHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhh
Confidence 224467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001397 952 QCAAAVDNLAAFYF 965 (1086)
Q Consensus 952 ~~l~~l~~l~~~~~ 965 (1086)
.++.++..+...+.
T Consensus 878 ~~l~~l~~l~k~~~ 891 (1041)
T KOG2020|consen 878 NGLNILLELLKNLA 891 (1041)
T ss_pred hhHHHHHHHHHHHH
Confidence 99998888877664
No 5
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.6e-14 Score=168.49 Aligned_cols=907 Identities=13% Similarity=0.109 Sum_probs=471.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
.++.+|.+++.+|.++.++..+.++++|...+++++.|...+++|+..+++.++||+|.+|+..|++ ...|++++.++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 3899999999999998889999999999999999999999999999999999999999999999877 78999999998
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHH
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVK 160 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~ 160 (1086)
+ .-++.-+... ...++.|.+|++..+|.+.-.--+|.|+ .-+.
T Consensus 85 ~----------------------------------~klf~~l~~~-~g~~~lVl~kl~~sLasl~l~~~~d~Wp--~ai~ 127 (982)
T KOG2022|consen 85 K----------------------------------LKLFLILSRF-AGGPKLVLNKLCASLASLILYMVPDLWP--TAIQ 127 (982)
T ss_pred H----------------------------------HHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHccccCC--chHH
Confidence 8 3333333333 3348999999999999998777778776 5578
Q ss_pred HHHHHHhh-ccc-----hhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhH-HH
Q 001397 161 ESTNFLSQ-ATS-----DHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVA-SR 233 (1086)
Q Consensus 161 ~v~~~~~~-~~~-----~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~-~~ 233 (1086)
+++..+.. .++ -++.+-|+.|+.+..|++..++.++...-.|...+++.+.-..+++..++-..+...+.. -.
T Consensus 128 ~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i 207 (982)
T KOG2022|consen 128 DVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLI 207 (982)
T ss_pred HHHHHHhcccCccccchhhHHHHHHHhccCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHH
Confidence 88776642 222 478888999999999998777655543334444444333222333322222221111000 01
Q ss_pred HHHHHHHHHhhcccccc-ccCCCCCCCCCccccccCccccccccC-cchHHHHHHHhhhcCCccHHHHHHHHHHHhcccc
Q 001397 234 LQELALSLCLKCLSFDF-VGTSIDESSEEFGTVQIPSAWRPVLED-PSTLQIFFDYYAITEAPLSKEALECLVRLASVRR 311 (1086)
Q Consensus 234 l~~~~L~l~~~~Lsw~f-~~~~~de~~~d~~~~~~P~sW~~~l~~-~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~ 311 (1086)
....++++... |+= ++.. ..+ ....+.+++.-.....+.-+.+=+|++ +-+
T Consensus 208 ~~~~a~dCv~~---Wi~~i~~~--------------------~~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt----~~~ 260 (982)
T KOG2022|consen 208 FKQAAVDCVEQ---WIRYISLT--------------------GMDCDQITQVLLDVLGQSTEGSYEAAEKCMT----IFG 260 (982)
T ss_pred hhhHHHHHHHH---HHHHhccc--------------------cccHHHHHHHHHHHHhhhccccccchhhhcc----cch
Confidence 11223333322 442 1110 001 112333333322111111112222221 111
Q ss_pred cCCCChH-----------HHHHH------HHHHHHHHHH-H---HhccccC-CCchhHHHHHHHHhhhhhhcchhhhhcc
Q 001397 312 SLFTNDA-----------ARSKF------LAHLMTGTKE-I---LQTGQGL-ADHDNYHEYCRLLGRFRVNYQLSELVNV 369 (1086)
Q Consensus 312 s~f~~~~-----------~~~~~------l~~~~~~i~~-i---l~~~~~l-~~~~~~~~~c~ll~rl~~~~~l~~L~~~ 369 (1086)
+++.++. +-..| +-.+..|... + .+...+. +.+|+.++|+++...+..||-..-+...
T Consensus 261 n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~ 340 (982)
T KOG2022|consen 261 NVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCA 340 (982)
T ss_pred hhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111111 11111 1112222111 1 0111111 1267788999999999999966555544
Q ss_pred ---cChHHHHHHHHHHHHHhhhhcccc--cCcHH-HHHHHHHHhhcccCCcCCCC-cchhhhhHHHHHHHHHhhhhcccc
Q 001397 370 ---EGYSDWIQLVAEFTLKSLQSWQWA--SSSVY-YLLGLWSRLVTSVPYLKGDA-PSLLDEFVPKITEGFITSRFNSVQ 442 (1086)
Q Consensus 370 ---~~~~~fi~~l~~fT~~~l~~~~~~--~~s~~-~LL~~W~~lv~~~~~~~~~~-~~~l~~~~~~I~~~yi~srl~~~~ 442 (1086)
+..+-+++.+ +....+...+... ++.+. -.++||..|.+++....++. +..-..|..+|+...++--+.|..
T Consensus 341 ~~g~~~e~v~rlv-~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~ 419 (982)
T KOG2022|consen 341 AQGEQSELVIRLV-QVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLA 419 (982)
T ss_pred hhcchHHHHHHHH-HHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 2222333333 2222333333332 34443 36999999988753332222 222233444555443333222211
Q ss_pred cccCCCCCCCCCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHH
Q 001397 443 AGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIA 522 (1086)
Q Consensus 443 ~~~~ee~~e~~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g 522 (1086)
--..+...+.+.++++.++..+..++-+.-..|+-...-+++.+-..+.+. ...++.++..++..| -.++-.-
T Consensus 420 ~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~---~aa~d~~p~s~~~tE----aci~~~~ 492 (982)
T KOG2022|consen 420 LPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQA---LAAGDEDPDSLNRTE----ACIFQFQ 492 (982)
T ss_pred CCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---hhccCCCchHHHHHH----HHHHHHH
Confidence 001223356788888888776666666665555555444444444444432 223333555454333 2332222
Q ss_pred HHhccccccCCCccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHH
Q 001397 523 AIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYA 602 (1086)
Q Consensus 523 ~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~ 602 (1086)
.+.. .++......+-++++..-. ...+ .. +|.+.++..--+.... -|++++.+.
T Consensus 493 sva~-------------~~~~t~~~~i~rl~~~~as-ik~S---~~-n~ql~~Tss~~igs~s-~~l~e~P~~------- 546 (982)
T KOG2022|consen 493 SVAE-------------YLGETESTWIPRLFETSAS-IKLS---AP-NPQLLSTSSDLIGSLS-NWLGEHPMY------- 546 (982)
T ss_pred HHHh-------------hcCcchhHHHHHHHHhccc-cccc---cC-ChhHHHHHHHHHHHHH-HHHhcCCcc-------
Confidence 2221 1111122224445543211 1111 11 3445555333333222 222322211
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHhcccCCCCccccc
Q 001397 603 RLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEY 682 (1086)
Q Consensus 603 ~l~~~~G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~l~~~ 682 (1086)
++.-+.-.+.-|. ..+.-.+++.-+.++++ .|+.=+. |....+++.. .+.++-.+ .
T Consensus 547 --------------ln~sl~~L~~~Lh----~sk~s~q~i~tl~tlC~---~C~~~L~-py~d~~~a~~-~e~l~~~~-~ 602 (982)
T KOG2022|consen 547 --------------LNPSLPLLFQGLH----NSKESEQAISTLKTLCE---TCPESLD-PYADQFSAVC-YEVLNKSN-A 602 (982)
T ss_pred --------------cCchHHHHHHHhc----CchHHHHHHHHHHHHHH---hhhhhCc-hHHHHHHHHH-HHHhcccc-c
Confidence 1111111111111 11111222222556666 3442221 1122222111 10111111 1
Q ss_pred ccchhhHHHHHHHHHHHhc---CCChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHhhhHhhhhccch--
Q 001397 683 RCSRSRTTFYYTIGWLIFM---EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRR-- 757 (1086)
Q Consensus 683 ~~~~~r~~~~~al~~l~~~---~~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~~~-- 757 (1086)
+ ...|..+++++|.+..- |+...|+.+++.|+-..++.... +..++++.+..++..+-++..++.+...+.
T Consensus 603 ~-~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~---~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~ 678 (982)
T KOG2022|consen 603 K-DSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLA---PGIDDQENHLRIAFQLNTISALFTSLINKKDI 678 (982)
T ss_pred C-chHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 1 34688999999998753 34566888888887776655432 356788888888888878877777765431
Q ss_pred ------hHH-------HHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeeccCCChhhHHHHHHHHH
Q 001397 758 ------TYG-------LLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSK 824 (1086)
Q Consensus 758 ------~~~-------~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~~Lf~~~~~ 824 (1086)
..+ .+....... ++.+-++.+.|-++.+|+....+-+..-+.+ -+=.|. .| ....+--
T Consensus 679 ~d~d~~~~~~~~~qq~~il~v~~k~-i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~--~~~sF~--~p----~l~~l~~ 749 (982)
T KOG2022|consen 679 IDTDQPEQREEPFQQFPILQVLQKA-IPVFEKVLSMWLGLSDVVEASCIIMVKGVRS--LLTSFP--EP----MLPSLCP 749 (982)
T ss_pred ccccchhhhccccccCCHHHHHHHH-HHHHHHHHHHHhcchhHHHHHHHHHHhcccc--ccccch--hh----hHHHHHH
Confidence 111 344444444 5778888888999999998876666554332 112221 11 1111222
Q ss_pred HHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHHHH-HhhccChhhHHhhHH
Q 001397 825 LIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALK-MTLSIPLADILAFRK 903 (1086)
Q Consensus 825 ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~-l~l~ip~~dll~yPk 903 (1086)
.+.+|..+ + ....+.+...++.-.+..-+.. +-+..-+..+++ ..+..--.-+..-|+
T Consensus 750 Fi~r~~~~----~------------~a~tl~l~~~~l~~~~~~~~~~-----~lv~~~~~~~~q~sl~lf~~~~f~n~~D 808 (982)
T KOG2022|consen 750 FIVRFLTS----C------------LAVTLSLIAACLLAKSTVEQCK-----PLVGQDMANAFQQSLLLFEQHPFSNQPD 808 (982)
T ss_pred HHHHhccc----h------------HHHHHHHHHHHHHhhhcccccc-----ccHHHHHHHHHHHHHHHHhccCCCCCch
Confidence 22223211 1 0011222222222111111111 112233333333 222222233677889
Q ss_pred hHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHH-HHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHH
Q 001397 904 LTKAYFAFLEVLFSSHITFILNLNTNTFMHIVG-SLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINL 982 (1086)
Q Consensus 904 l~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~-sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l 982 (1086)
.-..+|.+++.+.+.+|..+... ...|..++- +-..++++.++.-...+++.+.+++++.+++.- ...
T Consensus 809 i~~~~~~~v~~ilkk~P~~~~~~-~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~------~tv---- 877 (982)
T KOG2022|consen 809 IYLQLIGFVRQILKKIPKFLEPS-MLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDL------VTV---- 877 (982)
T ss_pred HHHHHHHHHHHHHHhCcCccccc-hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchh------HHH----
Confidence 99999999999999999765543 334666666 778899999988888888999998887754210 011
Q ss_pred HHHh-hcCCCcHHHHHHHHHHHHhccCCCchh-cchhhhHHHHhcCHHHHHHHHHHHHhcCC-h--hhHHHHHHHHHHHH
Q 001397 983 ARHI-VECPTLFPEILKTLFEIVLFEDCGNQW-SLSRPMLSLILISEQVFSDLKAQILTSQP-V--DQHQRLSVCFDKLM 1057 (1086)
Q Consensus 983 ~~~~-~~~~~~~~~~l~~ll~~ll~~~~~~~~-~~s~~L~~LI~~~~~~f~~l~~~li~~q~-~--~~~~~l~~aF~~L~ 1057 (1086)
.+.+ +-++. ++..+|.-+-.+-.+++. ..++.|+++-.=++..-.....+.++.-. | ..-......|.+.+
T Consensus 878 ~~~V~~~G~~----Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~l 953 (982)
T KOG2022|consen 878 TSVVAEIGPI----LIYAIMRGVGGEASRSTLDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSL 953 (982)
T ss_pred HHHHHhcchH----HHHHHHHHhcCcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHH
Confidence 1111 11333 344444444444445554 67888888865554444444455552210 3 11244455555543
Q ss_pred hhhhcccChhhHHHHHHHHHHHHHHhhc
Q 001397 1058 ADVARSLDSKNRDKFTQNLTVFRHEFRV 1085 (1086)
Q Consensus 1058 ~~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1085 (1086)
- . +|-||+.|.+.+..|--+.|+
T Consensus 954 l---r--er~n~R~~k~~il~~~L~~~~ 976 (982)
T KOG2022|consen 954 L---R--ERGNKRNFKQQILEFNLACTG 976 (982)
T ss_pred H---H--HHhcHHHHHHHHHHHHHHhcC
Confidence 2 2 567888888888888776664
No 6
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.77 E-value=7.4e-17 Score=180.33 Aligned_cols=250 Identities=16% Similarity=0.271 Sum_probs=174.7
Q ss_pred HHHHHHHHHHhhcccceeeccCCChhhH---HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCc
Q 001397 789 TPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNY 865 (1086)
Q Consensus 789 ~~iLkl~~e~v~nk~~rl~f~~~s~~~~---~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~ 865 (1086)
..|||++..++++.. .++.+ ++-..+..++..|.+. .|..+ ++|.+..+..+++-+.+.+.
T Consensus 45 keIL~Li~t~i~~~~--------~~~~v~~~~i~~l~~~vL~DY~~~---~p~~r--~~evL~l~~~ii~kl~~~~~--- 108 (319)
T PF08767_consen 45 KEILKLIETFISKAE--------DPEEVANNFIPPLLDAVLGDYQNS---VPDAR--EPEVLSLMATIINKLGELIQ--- 108 (319)
T ss_dssp HHHHHHHHHHHHT-S---------HHHHHHHTHHHHHHHHHHHHHHS----GGGS---HHHHHHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHHHHhcC---Ccccc--ChhHHHHHHHHHHHHHHhhh---
Confidence 588899998888431 22222 3444456678888763 44444 67777755555444444332
Q ss_pred cccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCC
Q 001397 866 VNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL 945 (1086)
Q Consensus 866 vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~ 945 (1086)
+.++.+++.+|++++.|+.+|+.+||++|.+||+||+++++.||..+.++|++.|+.+++++.||++|.
T Consensus 109 -----------~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~ 177 (319)
T PF08767_consen 109 -----------PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT 177 (319)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS
T ss_pred -----------hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 558999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcc-hhhhHHHHh
Q 001397 946 DTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSL-SRPMLSLIL 1024 (1086)
Q Consensus 946 ~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~-s~~L~~LI~ 1024 (1086)
+++|+..||+++..+++.+.+ .+ .+.+..+ .++++..+++.+|.++++.+|+..+.. +..|..|+.
T Consensus 178 ~~~I~~~~L~~l~~ll~~~~~---~~----~~~~~~F------~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 178 NREISETGLNILLELLNNVSK---TN----PEFANQF------YQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH----S----HHHHHHH------HHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHh---cC----HHHHHHH------HHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 11 1233333 235688899999999999999998843 455555553
Q ss_pred c----------------CHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001397 1025 I----------------SEQVFSDLKAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1084 (1086)
Q Consensus 1025 ~----------------~~~~f~~l~~~li~-~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1084 (1086)
+ +.++-.+...+++. .-|.-.++++...-..|.+ ...+..+|+..+..|+-.+|
T Consensus 245 ~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~------~~~d~~~Fk~~lrDFlI~~k 315 (319)
T PF08767_consen 245 LVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFE------LNNDPEKFKTHLRDFLIQLK 315 (319)
T ss_dssp HHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------TTT-HHHHHHHHHHHHHHHT
T ss_pred HHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH------hcCCHHHHHHHHHHHhhhhh
Confidence 2 12222333333332 2333333344433333432 12358999999999999887
No 7
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=9.6e-13 Score=150.79 Aligned_cols=260 Identities=15% Similarity=0.186 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHhhhccCcccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhh--cccChhhhhh
Q 001397 4 LAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--HSLALQLRLD 79 (1086)
Q Consensus 4 ~~~le~~~~~~y~~-~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~ 79 (1086)
++.+|+++.....| .|+..|++|-+.+.+.+.+|++|+.|-.+|-++ +++.++|+.+++|.+.++. +..+..+..-
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 46789999998887 688899999999999999999999999999776 8999999999999999988 6677777766
Q ss_pred hhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHH-----hcCCCchHHHHHHHHHHHHHHHhhccCCChh
Q 001397 80 ISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLA-----KRGPELQSFVTASLIQLLCRLTKFGWFDDDR 154 (1086)
Q Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-----~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~ 154 (1086)
+| .-+..|+. ......|.|+.||+-++++.+.-...++.|+
T Consensus 82 vR----------------------------------~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wn 127 (980)
T KOG2021|consen 82 VR----------------------------------FSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWN 127 (980)
T ss_pred HH----------------------------------HHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhH
Confidence 77 44444443 1223568999999999999999999999998
Q ss_pred hhhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhccCCCCCCchHHHHhH---HhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001397 155 FRDLVKESTNFLSQATS--DHYAIGLKILNQLVSEMNQPNPGLPSTHHRRV---ACSFRDQSLFQIFQISLTSLGQLKSD 229 (1086)
Q Consensus 155 ~~~~i~~v~~~~~~~~~--~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~---~~~f~~~~L~~if~~~~~~L~~~~~~ 229 (1086)
+|..++...+. .++ +....-|++|.++=+|....+.-.+.+..+|. |-.+|+++.++|-..-.++++.-...
T Consensus 128 --sfF~dlmsv~~-~~s~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~ 204 (980)
T KOG2021|consen 128 --SFFDDLMSVFQ-VDSAISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI 204 (980)
T ss_pred --HHHHHHHHHHh-cccchhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 88999887763 333 33566778888888888776666666666654 55899999999999999999865432
Q ss_pred hHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcc
Q 001397 230 VASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASV 309 (1086)
Q Consensus 230 ~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl 309 (1086)
.-+.+...+|++.-+..||+=++- +.++.+++++|.... -.+++..|-.|+..+.|-
T Consensus 205 ~npgl~~~cLdc~g~fVSWIdInL---------------------IaNd~f~nLLy~fl~--ieelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWIDINL---------------------IANDYFLNLLYKFLN--IEELRIAACNCILAIVSK 261 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhhhhh---------------------hhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhc
Confidence 113588899999999999985443 456679999988764 467899999999999997
Q ss_pred cccCCCChHHHHHHHHHH
Q 001397 310 RRSLFTNDAARSKFLAHL 327 (1086)
Q Consensus 310 ~~s~f~~~~~~~~~l~~~ 327 (1086)
+ -.+-++..+++.+
T Consensus 262 k----MkP~dKL~lln~L 275 (980)
T KOG2021|consen 262 K----MKPMDKLALLNML 275 (980)
T ss_pred C----CChhHHHHHHHHH
Confidence 7 2245788877666
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.3e-06 Score=105.02 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
+.+.|+++...+.+|. ++.|++||+.|...-..+...+...+|+..+.+|.++-+|+-.+++++.+ +.|+.+.|.+|
T Consensus 2 ~~~~l~qLl~~l~spD-n~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSPD-NEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred chhHHHHHHHHhcCCC-chHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4578999999998754 58899999999855555559999999999999999999999999999988 78999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHH
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVK 160 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~ 160 (1086)
| +-++.-+.+ ...+-|+.|++.++|-|.|..-++.|| ++++
T Consensus 81 k----------------------------------s~lL~~~~~---E~~~~vr~k~~dviAeia~~~l~e~WP--ell~ 121 (1075)
T KOG2171|consen 81 K----------------------------------SSLLEIIQS---ETEPSVRHKLADVIAEIARNDLPEKWP--ELLQ 121 (1075)
T ss_pred H----------------------------------HHHHHHHHh---ccchHHHHHHHHHHHHHHHhccccchH--HHHH
Confidence 9 667775553 236789999999999999999988877 6677
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhccC
Q 001397 161 ESTNFLSQATSDHYAIGLKILNQLVSEMNQ 190 (1086)
Q Consensus 161 ~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~ 190 (1086)
-+.+..++.++..+-.++.||+.++..|..
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 777766666778888999999999888765
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.7e-06 Score=97.81 Aligned_cols=774 Identities=17% Similarity=0.224 Sum_probs=373.8
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCCh--HHHHHHHHHHHHHHhh--cccChhhhhh
Q 001397 6 QLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNALTP--YALMLASSSLLKQVTE--HSLALQLRLD 79 (1086)
Q Consensus 6 ~le~~~~~~y~~--~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~--~~~f~a~~~L~~~i~~--~~l~~~~~~~ 79 (1086)
.|.++++.+-++ ++.+.|+.+...+.+|..-||.-.+.-+||.+.++. -++=.|--.|++-++- +.++++...=
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 456666666654 566889999999999999999999999999776643 4444444445554544 5566655444
Q ss_pred hhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHH
Q 001397 80 ISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLV 159 (1086)
Q Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i 159 (1086)
+| +-+++=+ -+.++.+++-.=.++-.|+-.+-..+|| +..
T Consensus 91 iK----------------------------------s~~l~~l----gd~~~lIr~tvGivITTI~s~~~~~~wp--elL 130 (885)
T KOG2023|consen 91 IK----------------------------------SECLHGL----GDASPLIRATVGIVITTIASTGGLQHWP--ELL 130 (885)
T ss_pred HH----------------------------------HHHHhhc----cCchHHHHhhhhheeeeeecccccccch--hHH
Confidence 55 3333322 2334456555555555555554455554 455
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001397 160 KESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELAL 239 (1086)
Q Consensus 160 ~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L 239 (1086)
+.+++.+.+.+..+ +.-+|- .|.+|++=+.+.|..-..+
T Consensus 131 p~L~~~L~s~d~n~-----------------------------~EgA~~--AL~KIcEDsa~~lds~~~~---------- 169 (885)
T KOG2023|consen 131 PQLCELLDSPDYNT-----------------------------CEGAFG--ALQKICEDSAQFLDSDVLT---------- 169 (885)
T ss_pred HHHHHHhcCCcccc-----------------------------cchhHH--HHHHHHhhhHHHHhhhccc----------
Confidence 56666553111100 111232 4666655555544331100
Q ss_pred HHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCCChHH
Q 001397 240 SLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAA 319 (1086)
Q Consensus 240 ~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~~~~~ 319 (1086)
+ | . .-++..|+..|..+.|.++..++.|+.|..-++. ..
T Consensus 170 ----r-----p-------------------------l-~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~------qa 208 (885)
T KOG2023|consen 170 ----R-----P-------------------------L-NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT------QA 208 (885)
T ss_pred ----C-----c-------------------------h-HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc------HH
Confidence 0 0 0 1156677788887889999999999999886552 33
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhcccccCcHHH
Q 001397 320 RSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYY 399 (1086)
Q Consensus 320 ~~~~l~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~~fT~~~l~~~~~~~~s~~~ 399 (1086)
-...+..+++++..+- + =.+++.-..+|+.+.-+...++-+ ++ +. +..+-++..+..+. ..++.-.-
T Consensus 209 l~~~iD~Fle~lFala-n---D~~~eVRk~vC~alv~Llevr~dk-l~--ph----l~~IveyML~~tqd--~dE~VALE 275 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALA-N---DEDPEVRKNVCRALVFLLEVRPDK-LV--PH----LDNIVEYMLQRTQD--VDENVALE 275 (885)
T ss_pred HHHHHHHHHHHHHHHc-c---CCCHHHHHHHHHHHHHHHHhcHHh-cc--cc----hHHHHHHHHHHccC--cchhHHHH
Confidence 3444455555443332 1 134555667999999888887432 22 22 33333333221111 11221112
Q ss_pred HHHHHHHhhcccCCcCCCCcchhhhhHHHHHHH----------------------------------HHhhhhccccccc
Q 001397 400 LLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEG----------------------------------FITSRFNSVQAGF 445 (1086)
Q Consensus 400 LL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~----------------------------------yi~srl~~~~~~~ 445 (1086)
-=+||..+...- ..++.+..|.+++.-. |.++|...-.+..
T Consensus 276 ACEFwla~aeqp-----i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~ 350 (885)
T KOG2023|consen 276 ACEFWLALAEQP-----ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDA 350 (885)
T ss_pred HHHHHHHHhcCc-----CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccc
Confidence 346777766531 1123333333322211 1112211100001
Q ss_pred -CCCCCCCCCCcHHHHHH------HHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 001397 446 -PDDLSDNPLDNVELLQD------QLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIV 518 (1086)
Q Consensus 446 -~ee~~e~~~~d~~~~~~------~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli 518 (1086)
+||++||+.||.+.+.+ --..+..++..-.++.++.+.-++++.+.. =.|.+
T Consensus 351 ~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~---------------------~~W~v 409 (885)
T KOG2023|consen 351 DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS---------------------EEWKV 409 (885)
T ss_pred ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc---------------------chhhh
Confidence 11122333344444431 112233445555566666666666643221 12333
Q ss_pred -----HHHHHHhccccccCCCccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhcccc
Q 001397 519 -----HIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQA 593 (1086)
Q Consensus 519 -----~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~ 593 (1086)
+..|++-.|= ..+. .+.+ ++|+-..+.+++ ++. |.+-.-..|=|.||.+-.+.+..
T Consensus 410 rEagvLAlGAIAEGc-M~g~----~p~L-peLip~l~~~L~--DKk-----------plVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 410 REAGVLALGAIAEGC-MQGF----VPHL-PELIPFLLSLLD--DKK-----------PLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred hhhhHHHHHHHHHHH-hhhc----ccch-HHHHHHHHHHhc--cCc-----------cceeeeeeeeHhhhhhhHhcCCh
Confidence 2334432220 0000 0111 245544455552 111 21222345666666644333221
Q ss_pred ccchHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHhccc
Q 001397 594 MHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTR 673 (1086)
Q Consensus 594 ~~~~~~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~~~~ 673 (1086)
.+.+. .|+.-+++++. .++++|.+.|..-|..+-.. .+..|+ |...+++.+..
T Consensus 471 ----~~~f~------------pvL~~ll~~ll------D~NK~VQEAAcsAfAtleE~--A~~eLV--p~l~~IL~~l~- 523 (885)
T KOG2023|consen 471 ----DEYFK------------PVLEGLLRRLL------DSNKKVQEAACSAFATLEEE--AGEELV--PYLEYILDQLV- 523 (885)
T ss_pred ----HhhhH------------HHHHHHHHHHh------cccHHHHHHHHHHHHHHHHh--ccchhH--HHHHHHHHHHH-
Confidence 12222 22333444432 34567777777666655553 233333 35555555542
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHhcC----CChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHhhhH
Q 001397 674 EHFPFLEEYRCSRSRTTFYYTIGWLIFME----ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGI 749 (1086)
Q Consensus 674 ~~~~~l~~~~~~~~r~~~~~al~~l~~~~----~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~~l~Gi 749 (1086)
+.|-. -+ .|.-..+|-|+|.+...- ...+|++-+|.|+-++|..+...+ +++.-+++|+..|
T Consensus 524 --~af~k-YQ-~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D----------KdLfPLLEClSsi 589 (885)
T KOG2023|consen 524 --FAFGK-YQ-KKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD----------KDLFPLLECLSSI 589 (885)
T ss_pred --HHHHH-Hh-hcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc----------chHHHHHHHHHHH
Confidence 12210 00 122246799998886431 357899999999999999986433 3588999999999
Q ss_pred hhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeeccCCChhh-HHHHHHHHHHHHH
Q 001397 750 AMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNG-ILLFREVSKLIVA 828 (1086)
Q Consensus 750 ~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~-~~Lf~~~~~ll~~ 828 (1086)
+.|... + +.|..-+++.+.++... +.....++.... -+++....+- +.--..++.+.+.
T Consensus 590 a~AL~~-g--------F~P~~~~Vy~Rc~~il~----------~t~q~~~~~~~~-~~~~~pdkdfiI~sLDL~SGLaeg 649 (885)
T KOG2023|consen 590 ASALGV-G--------FLPYAQPVYQRCFRILQ----------KTLQLLAKVQQD-PTVEAPDKDFIIVSLDLLSGLAEG 649 (885)
T ss_pred HHHHhc-c--------ccccCHHHHHHHHHHHH----------HHHHHHHhccCC-ccccCCCcceEEEeHHHHhHHHHH
Confidence 999976 2 22222222222222100 000111111000 0000000000 0011112222222
Q ss_pred HHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHH
Q 001397 829 YGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAY 908 (1086)
Q Consensus 829 y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~ 908 (1086)
.+.++-..-. -.++....++|+.. .-|+.|..-
T Consensus 650 Lg~~ie~Lva----------------------------------------~snl~~lll~C~~D-------~~peVRQS~ 682 (885)
T KOG2023|consen 650 LGSHIEPLVA----------------------------------------QSNLLDLLLQCLQD-------EVPEVRQSA 682 (885)
T ss_pred hhhchHHHhh----------------------------------------hccHHHHHHHHhcc-------CChHHHHHH
Confidence 2222110000 01122333333222 237889999
Q ss_pred HHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhc---------------cCCC
Q 001397 909 FAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNIT---------------MGEA 973 (1086)
Q Consensus 909 f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~~---------------~~~~ 973 (1086)
|.|+.-++..|++.+.-.-++ |..++. ..+.....+++.+++-++..++.-...+.+ +...
T Consensus 683 FALLGDltk~c~~~v~p~~~~-fl~~lg---~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~ 758 (885)
T KOG2023|consen 683 FALLGDLTKACFEHVIPNLAD-FLPILG---ANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNT 758 (885)
T ss_pred HHHHHHHHHHHHHhccchHHH-HHHHHh---hcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCc
Confidence 999999999988876643333 333322 455555567778888888887765544321 1111
Q ss_pred CCC---hhHHHHHHHhhcCCCc----HHHHHHHHHHHHh-ccCCCchhcchhhhHHHHhcCHHHHHHHH---HHHHhcCC
Q 001397 974 PTS---PAAINLARHIVECPTL----FPEILKTLFEIVL-FEDCGNQWSLSRPMLSLILISEQVFSDLK---AQILTSQP 1042 (1086)
Q Consensus 974 ~~~---~~~~~l~~~~~~~~~~----~~~~l~~ll~~ll-~~~~~~~~~~s~~L~~LI~~~~~~f~~l~---~~li~~q~ 1042 (1086)
+.+ ..+..+.++-.-+|+. ++++++--...+= -.|...--+|=+-+...|-++|..+..-. ...+++-.
T Consensus 759 ~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~ 838 (885)
T KOG2023|consen 759 PKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS 838 (885)
T ss_pred hHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc
Confidence 000 0000111111112322 3333443332221 11221112677888888999998766554 34455543
Q ss_pred hhhHHHHHHHHHHHHhhhhcccChhhHHHH
Q 001397 1043 VDQHQRLSVCFDKLMADVARSLDSKNRDKF 1072 (1086)
Q Consensus 1043 ~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F 1072 (1086)
.-...++.-|.+.+.|-..-....|=++|
T Consensus 839 -np~~~l~~~f~kiL~g~k~qvg~~nW~~~ 867 (885)
T KOG2023|consen 839 -NPEDDLRDEFYKILQGFKNQVGKINWQRF 867 (885)
T ss_pred -ChHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 22288888888888765554555665555
No 10
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.99 E-value=4.9e-09 Score=104.76 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccC-CCCCCchHHHHhHHhhhh
Q 001397 130 QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQ-PNPGLPSTHHRRVACSFR 208 (1086)
Q Consensus 130 ~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~-~~~~~~~~~h~k~~~~f~ 208 (1086)
|++|++|++.+++.|.++.||+.|+ ++++++.+.+. .++.+...++.+|..+.+|+.. .+...+..+++..+..++
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~-~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQ-SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 5799999999999999999999998 89999999884 5688899999999999999986 234445555555566777
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHh
Q 001397 209 DQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYY 288 (1086)
Q Consensus 209 ~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y 288 (1086)
+. .+.|++...++|.+........+...+|+++..+++|...+. +.+.++++.+|+..
T Consensus 78 ~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~---------------------i~~~~~l~~~~~~l 135 (148)
T PF08389_consen 78 SN-SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL---------------------IINSNLLNLIFQLL 135 (148)
T ss_dssp HH-HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH---------------------HHSSSHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH---------------------hccHHHHHHHHHHc
Confidence 65 888888888888876543224588899999999999876543 45566999999876
Q ss_pred hhcCCccHHHHHHHH
Q 001397 289 AITEAPLSKEALECL 303 (1086)
Q Consensus 289 ~~~~~~~~~~~l~cL 303 (1086)
.++++...|.+||
T Consensus 136 --~~~~~~~~A~~cl 148 (148)
T PF08389_consen 136 --QSPELREAAAECL 148 (148)
T ss_dssp --TSCCCHHHHHHHH
T ss_pred --CCHHHHHHHHHhC
Confidence 5778899999997
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0035 Score=74.82 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCC-ChHHHHHHHHHHHHHHhhcc---------cC
Q 001397 6 QLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL-TPYALMLASSSLLKQVTEHS---------LA 73 (1086)
Q Consensus 6 ~le~~~~~~y~~--~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~-~~~~~f~a~~~L~~~i~~~~---------l~ 73 (1086)
.+|.+.+.+... +|++.|+.||+.|.....++++--..-.++.+++ .+.++--|+..+++-|++++ ++
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~ 82 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKII 82 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccc
Confidence 355555555554 4578899999999999988888788888998887 78888888889999999733 45
Q ss_pred hhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCCh
Q 001397 74 LQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD 153 (1086)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~ 153 (1086)
.++|..|| .-++....+. +.-++.++..++..|.|+++|+.|
T Consensus 83 ~~~~e~ik----------------------------------slIv~lMl~s----~~~iQ~qlseal~~Ig~~DFP~kW 124 (960)
T KOG1992|consen 83 EEDREQIK----------------------------------SLIVTLMLSS----PFNIQKQLSEALSLIGKRDFPDKW 124 (960)
T ss_pred hhHHHHHH----------------------------------HHHHHHHhcC----cHHHHHHHHHHHHHHhccccchhh
Confidence 55666677 4455544332 567889999999999999999999
Q ss_pred hhhhHHHHHHHHHhhccchhHHHHHH-HHHHHHHhccC-CCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHh
Q 001397 154 RFRDLVKESTNFLSQATSDHYAIGLK-ILNQLVSEMNQ-PNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQ 225 (1086)
Q Consensus 154 ~~~~~i~~v~~~~~~~~~~~~~~gl~-ll~~lv~e~~~-~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~ 225 (1086)
| ++++++++.+++++-. ...|.. .-..+-.-|+. .+..--|..-+++.-+|.. -|..+|+...+..+.
T Consensus 125 p--tLl~dL~~~ls~~D~~-~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~-Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 125 P--TLLPDLVARLSSGDFN-VINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAE-PLTDLFRKTMELIQR 194 (960)
T ss_pred H--HHHHHHHhhccccchH-HHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHh-HHHHHHHHHHHHHhh
Confidence 9 8999999988544333 333322 22222222221 1111125555566556654 366666666666543
No 12
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=7.4e-06 Score=93.67 Aligned_cols=309 Identities=20% Similarity=0.257 Sum_probs=183.2
Q ss_pred HHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhhhhccCCCcchhhhhhhhhhhh
Q 001397 24 AHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDISNSCSQSTCVFAIYAFHVCVS 101 (1086)
Q Consensus 24 ~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 101 (1086)
.+|.++|.+|++++++|..|..||..-...++..||+++++..|.. +.+|+.+-..+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slr-------------------- 61 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLR-------------------- 61 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHH--------------------
Confidence 4689999999999999999999999999999999999999999988 889998877777
Q ss_pred hHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHH--hhccCCChhhhhHHHHHHHHHhhccchhHHHHHH
Q 001397 102 LITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLT--KFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLK 179 (1086)
Q Consensus 102 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~--K~~w~~~~~~~~~i~~v~~~~~~~~~~~~~~gl~ 179 (1086)
+-++..+.+- .+.++-++.+++-.+|.+. -.+|.+. +.++....++ .....+.-|.
T Consensus 62 --------------dsl~thl~~l-~~~~~~i~tQL~vavA~Lal~~~~W~n~------I~e~v~~~~~-~~~~~~~lLe 119 (559)
T KOG2081|consen 62 --------------DSLITHLKEL-HDHPDVIRTQLAVAVAALALHMPEWVNP------IFELVRALSN-KHPAVPILLE 119 (559)
T ss_pred --------------HHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHhHhhcch------HHHHHHHhhc-CCccHHHHHH
Confidence 5555544433 3334478888888877765 3467663 5555544422 3323678899
Q ss_pred HHHHHHHhccCCCCCCchHHHHhHHhhhhhh---hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccc-cccccCCC
Q 001397 180 ILNQLVSEMNQPNPGLPSTHHRRVACSFRDQ---SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLS-FDFVGTSI 255 (1086)
Q Consensus 180 ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~---~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Ls-w~f~~~~~ 255 (1086)
+|..+.+|+.+......- .|+. .|.++ .-..+.......|+....++ . ..|+-+.+|++ |--.+-.
T Consensus 120 iL~VlPEE~~~~~~~~~a--~Rr~--e~~~~l~~~~~~~L~~l~~lLe~~~l~~-~----~~l~~Vl~~l~SWl~~~~~- 189 (559)
T KOG2081|consen 120 ILKVLPEETRDIRLTVGA--NRRH--EFIDELAAQVSKVLVFLSDLLERSDLKS-S----DDLEQVLRCLGSWLRLHVF- 189 (559)
T ss_pred HHHhCcHhhcchhhhhhh--hhHH--HHHHHHHHhHHHHHHHHHHHHhhcCCCh-h----hHHHHHHHHHhhhhhhccC-
Confidence 999999999875532111 1222 23332 33444455555555432211 2 33334555554 6432211
Q ss_pred CCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHH
Q 001397 256 DESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEIL 335 (1086)
Q Consensus 256 de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~~~~~~~~~l~~~~~~i~~il 335 (1086)
|.+ .+.....++.+.|.... ..++-..+-+|+..+-.-..+. ++.+ .|-..++.+. .++
T Consensus 190 ------------~~d--~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~~---~~~~-~~~~~l~~~v-~~L 248 (559)
T KOG2081|consen 190 ------------PPD--QVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLDR---SEGL-PLAAILFIGV-IIL 248 (559)
T ss_pred ------------CHH--HHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhh---hccC-chhHHHhccc-ccc
Confidence 000 01222247788887764 5667788888888776422111 1111 2333333332 333
Q ss_pred hcccc----CCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhcccccCcHHHHHHHHHHhhccc
Q 001397 336 QTGQG----LADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 411 (1086)
Q Consensus 336 ~~~~~----l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~~fT~~~l~~~~~~~~s~~~LL~~W~~lv~~~ 411 (1086)
++..+ -.|.+-...+||++.-+...|- ..+...+. .|+..+-.+. .+-.... .+...+-+.+|.++...+
T Consensus 249 ~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~-~~i~~np~--~~l~~vellL-l~~~h~~--~evie~SF~fW~~lse~l 322 (559)
T KOG2081|consen 249 ETAFHLAMAGEDLDKNEAICRIFTELGEAFV-VLISTNPE--EFLRIVELLL-LVAGHND--TEVIEASFNFWYSLSEEL 322 (559)
T ss_pred chHHHHhhcccCHHHHHHHHHHHHHHHHHHH-HHHhhCCC--cchhHHHHHH-HhccCCc--hhhhhhhHHhhhhhHHHH
Confidence 33222 2344555578999999988883 33333333 3344332221 1111112 256778899999988765
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.015 Score=71.16 Aligned_cols=179 Identities=19% Similarity=0.207 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHH-HHHHHHHHHHHHhh---cc--------cChhhhhhhhhccC
Q 001397 18 QDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYA-LMLASSSLLKQVTE---HS--------LALQLRLDISNSCS 85 (1086)
Q Consensus 18 ~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~-~f~a~~~L~~~i~~---~~--------l~~~~~~~i~~~~~ 85 (1086)
+++..|..||+.|.++.+.|.....|-+|.-....+.. +--|+--+++.|.+ .. +++++|.-+|
T Consensus 16 ~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ir---- 91 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIR---- 91 (1010)
T ss_pred CChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHH----
Confidence 35789999999999999999999999999988877666 77788888889987 23 7889999999
Q ss_pred CCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHH
Q 001397 86 QSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNF 165 (1086)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~ 165 (1086)
+-++.++++. |..+|.++..++-.|+|...|..|+ .+++.+..+
T Consensus 92 ------------------------------enIl~~iv~~----p~~iRvql~~~l~~Ii~~D~p~~Wp--~l~d~i~~~ 135 (1010)
T KOG1991|consen 92 ------------------------------ENILETIVQV----PELIRVQLTACLNTIIKADYPEQWP--GLLDKIKNL 135 (1010)
T ss_pred ------------------------------HHHHHHHHhC----chHHHHHHHHHHHHHHhcCCcccch--hHHHHHHHH
Confidence 8899988865 7799999999999999999999988 789999999
Q ss_pred HhhccchhHHHHHHHHHHHHHhcc--CCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 001397 166 LSQATSDHYAIGLKILNQLVSEMN--QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCL 243 (1086)
Q Consensus 166 ~~~~~~~~~~~gl~ll~~lv~e~~--~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~ 243 (1086)
+.+++..+..-||-.|..++..+. ...--.+. -..++ +.++.|.+...++|.+-...+ ..+.+..|++..
T Consensus 136 Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l------~~~v~-~~fP~il~~~~~ll~~~s~~s-~el~klIlKifk 207 (1010)
T KOG1991|consen 136 LQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL------GEAVE-ELFPDILQIFNGLLSQESYQS-VELQKLILKIFK 207 (1010)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhccccccccH------HHHHH-HHHHHHHHHHHhhccccchHH-HHHHHHHHHHHH
Confidence 866666788999999999998765 22211111 11233 458888888888887642111 234444444443
Q ss_pred h
Q 001397 244 K 244 (1086)
Q Consensus 244 ~ 244 (1086)
.
T Consensus 208 s 208 (1010)
T KOG1991|consen 208 S 208 (1010)
T ss_pred H
Confidence 3
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.12 Score=61.75 Aligned_cols=219 Identities=17% Similarity=0.186 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHhhhccC--cccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhh-------------cccChhhhhhh
Q 001397 17 SQDSVERAHAENTLKCFSVN--TDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------------HSLALQLRLDI 80 (1086)
Q Consensus 17 ~~~~~~r~~ae~~l~~f~~~--~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~-------------~~l~~~~~~~i 80 (1086)
++|+..|.+||+.|.++++. |..+...-.+|-+. +++++++.|.-.|++.+.. -.++.+-|.++
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667899999999999963 66666677777555 5799999999999998765 13566777777
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC-hhhhhHH
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-DRFRDLV 159 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~-~~~~~~i 159 (1086)
| ++++.-+- +..+.+.+..-+++|.|..-+-|.+ || +++
T Consensus 92 K----------------------------------~~il~tL~----~~ep~~~s~Aaq~va~IA~~ElP~n~wp--~li 131 (859)
T KOG1241|consen 92 K----------------------------------NNILRTLG----SPEPRRPSSAAQCVAAIACIELPQNQWP--ELI 131 (859)
T ss_pred H----------------------------------HHHHHHcC----CCCCCccchHHHHHHHHHHhhCchhhCH--HHH
Confidence 7 66666443 2356778888999999999999886 77 777
Q ss_pred HHHHHHHhhccch-hHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001397 160 KESTNFLSQATSD-HYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELA 238 (1086)
Q Consensus 160 ~~v~~~~~~~~~~-~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~ 238 (1086)
+.+..-.....+. +.--.|.-+--+-++..+.. .+++.=.-++.++....+.-.+ ..+--.+
T Consensus 132 ~~lv~nv~~~~~~~~k~~slealGyice~i~pev--------------l~~~sN~iLtaIv~gmrk~e~s---~~vRLaa 194 (859)
T KOG1241|consen 132 VTLVSNVGEEQASMVKESSLEALGYICEDIDPEV--------------LEQQSNDILTAIVQGMRKEETS---AAVRLAA 194 (859)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHccCCHHH--------------HHHHHhHHHHHHHhhccccCCc---hhHHHHH
Confidence 7766544222221 22222333333333332211 1111111223333333332211 2344477
Q ss_pred HHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhccc
Q 001397 239 LSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVR 310 (1086)
Q Consensus 239 L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~ 310 (1086)
++.+.++|.|. +...+-..|-+. +++..-+....++.++.+.+++||+.|.++.
T Consensus 195 ~~aL~nsLef~--~~nF~~E~ern~----------------iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 195 LNALYNSLEFT--KANFNNEMERNY----------------IMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HHHHHHHHHHH--HHhhccHhhhce----------------eeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 88888877653 222111111011 1222222222245678999999999999754
No 15
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=97.82 E-value=5.4e-05 Score=66.17 Aligned_cols=56 Identities=25% Similarity=0.252 Sum_probs=52.1
Q ss_pred HHHHHhhhccC-cccHHHHHHHH-hhCCChHHHHHHHHHHHHHHhh--c--------ccChhhhhhhh
Q 001397 26 AENTLKCFSVN-TDYISQCQFIL-DNALTPYALMLASSSLLKQVTE--H--------SLALQLRLDIS 81 (1086)
Q Consensus 26 ae~~l~~f~~~-~~~~~~~~~iL-~~s~~~~~~f~a~~~L~~~i~~--~--------~l~~~~~~~i~ 81 (1086)
||+.|.+|+.. |++|..|..|+ +.+.+++++++|+..|++.|.+ + .+|+++|..||
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik 68 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIK 68 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHH
Confidence 79999999998 99999999999 5566999999999999999988 5 79999999999
No 16
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.42 E-value=0.19 Score=61.50 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=105.7
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhh-------ccc
Q 001397 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSL 72 (1086)
Q Consensus 1 ~~~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~-------~~l 72 (1086)
|++++.++++-.. -++++..++.||+.|.++...++..-+...|-... .+-..+.-|+--+++.|.+ +.+
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 5555555544321 23455679999999999998888888888888666 4556667777777777765 457
Q ss_pred ChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC
Q 001397 73 ALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD 152 (1086)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~ 152 (1086)
.++++.-|| .-+++.+.+. +.+..-+...++++|.+...||.
T Consensus 79 ~p~e~v~IR----------------------------------~~l~~lii~s----~n~l~iq~a~avs~IA~~DfPde 120 (947)
T COG5657 79 LPDENVLIR----------------------------------DELFSLIISS----SNQLQIQNALAVSRIARLDFPDE 120 (947)
T ss_pred CCccchHHH----------------------------------HHHHHHHHcc----cchHHHHHHHHHHHHHhccCccc
Confidence 777777888 8888888764 33444478899999999999999
Q ss_pred hhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Q 001397 153 DRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 189 (1086)
Q Consensus 153 ~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~ 189 (1086)
|| ++++++...+++.+...+.-.+..+..++.++.
T Consensus 121 Wp--TL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 121 WP--TLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred ch--hHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 99 899999988865444445455555555555543
No 17
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.80 E-value=7.5 Score=48.21 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHhhhccCcccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhhcc------------cChhhhhhhhhcc
Q 001397 18 QDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTEHS------------LALQLRLDISNSC 84 (1086)
Q Consensus 18 ~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~~~------------l~~~~~~~i~~~~ 84 (1086)
+|+..|.+||..+.++...++.-..+-.+.-+- .+---+-.|+-.|++.|...+ .+.+.|.-||
T Consensus 16 ~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IR--- 92 (1005)
T KOG2274|consen 16 ADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIR--- 92 (1005)
T ss_pred CChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHH---
Confidence 466789999999999987666555555555333 444445556677777776611 2334455566
Q ss_pred CCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHH
Q 001397 85 SQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTN 164 (1086)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~ 164 (1086)
+-+++-+. +..+.+++.+.-++..|..-.|||.|| +.++-|.+
T Consensus 93 -------------------------------e~Ll~~l~----~sn~ki~~~vay~is~Ia~~D~Pd~Wp--Elv~~i~~ 135 (1005)
T KOG2274|consen 93 -------------------------------EQLLNLLD----DSNSKIRSAVAYAISSIAAVDYPDEWP--ELVPFILK 135 (1005)
T ss_pred -------------------------------HHHHhhhh----ccccccchHHHHHHHHHHhccCchhhH--HHHHHHHH
Confidence 77777665 336788999999999999999999998 77888888
Q ss_pred HHhhccchhHHHHHHHHHHHHHhc
Q 001397 165 FLSQATSDHYAIGLKILNQLVSEM 188 (1086)
Q Consensus 165 ~~~~~~~~~~~~gl~ll~~lv~e~ 188 (1086)
.+..++.++..-++..|.++..|.
T Consensus 136 ~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 136 LLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHhccchhhhhhHHHHHHHHHHHH
Confidence 775455555555556666665553
No 18
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=15 Score=45.01 Aligned_cols=161 Identities=16% Similarity=0.086 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhh-------cccChhhhhhhhhccCCCc
Q 001397 17 SQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSLALQLRLDISNSCSQST 88 (1086)
Q Consensus 17 ~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~-------~~l~~~~~~~i~~~~~~~~ 88 (1086)
++|+..++-||+.|.++...|........|.-+. .+-.+++.|+--+++.|.+ ..+|++||..||
T Consensus 11 s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR------- 83 (978)
T KOG1993|consen 11 SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIR------- 83 (978)
T ss_pred CCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHH-------
Confidence 4567789999999999999999999888887555 4567789999999998866 479999999999
Q ss_pred chhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhh
Q 001397 89 CVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ 168 (1086)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~~ 168 (1086)
.-++... ....+.+..+...++++|.+.+.|-.|| ++++++.+-+.+
T Consensus 84 ---------------------------~~Ll~~~----~E~~nQlaiQ~AvlisrIARlDyPreWP--~Lf~~L~~~Lq~ 130 (978)
T KOG1993|consen 84 ---------------------------CNLLLHS----DEENNQLAIQNAVLISRIARLDYPREWP--DLFPDLLGQLQS 130 (978)
T ss_pred ---------------------------HHHHHhc----ccchhHHHHHHHHHHHHHHhcCCCccch--hHHHHHHHHHHH
Confidence 3333322 2335778888899999999999999988 777777665542
Q ss_pred ----ccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHh
Q 001397 169 ----ATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQ 225 (1086)
Q Consensus 169 ----~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~ 225 (1086)
++...+.-.+-.+..++.++++.+. . +++..|.+. -+.|+.+....+-+
T Consensus 131 ~~~~gD~~~~~RiLi~l~~ilK~Lat~RL----~---a~rk~F~el-~~~I~~~l~~~l~s 183 (978)
T KOG1993|consen 131 SLGTGDSLVQHRILITLHHILKALATKRL----L---ADRKAFYEL-APEILTILAPILWS 183 (978)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHhHH----h---hhhHHHHHH-hHHHHHHHHHHHhc
Confidence 2445666667788888888876552 2 233347754 66777755555544
No 19
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=13 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=18.8
Q ss_pred ccchHHHHHHHHHHHHHhhhHhhc
Q 001397 567 ELSKQRLDRAILTFFQHFRKSYVG 590 (1086)
Q Consensus 567 ~~s~~rl~~a~l~Fl~~~~~~yl~ 590 (1086)
..+|| +.++++|++-.|.-+|..
T Consensus 356 i~s~p-~~~~lmkaLvl~gfa~~d 378 (748)
T KOG4541|consen 356 IFSPP-LMEALMKALVLWGFAYLD 378 (748)
T ss_pred ccCch-HHHHHHHHHHHHHHHHhh
Confidence 35545 999999999999988874
No 20
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=79.39 E-value=1.7e+02 Score=36.25 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHhhhccCcccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhh-------cccChhhhhhhhhccCCCcch
Q 001397 19 DSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSLALQLRLDISNSCSQSTCV 90 (1086)
Q Consensus 19 ~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~-------~~l~~~~~~~i~~~~~~~~~~ 90 (1086)
|+..|..||+.|.++.+.|.....|-+|+... -.+.++--|+--+++.|.+ ..++++++.+.|
T Consensus 16 da~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K--------- 86 (970)
T COG5656 16 DAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAK--------- 86 (970)
T ss_pred CcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHH---------
Confidence 66789999999999999999999999999777 5789999999999999877 246778899998
Q ss_pred hhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCC-ChhhhhHHHHHHHHHhhc
Q 001397 91 FAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD-DDRFRDLVKESTNFLSQA 169 (1086)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~-~~~~~~~i~~v~~~~~~~ 169 (1086)
.|+.+-+......-+.-.+..+...+..|.--+|+. -|+ +.+...+++.++
T Consensus 87 -------------------------~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ 138 (970)
T COG5656 87 -------------------------KYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSS 138 (970)
T ss_pred -------------------------HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhccc
Confidence 777776665544445556777888888999999994 476 566667777555
Q ss_pred cchhHHHHHHHHHHHHHhcc
Q 001397 170 TSDHYAIGLKILNQLVSEMN 189 (1086)
Q Consensus 170 ~~~~~~~gl~ll~~lv~e~~ 189 (1086)
...+...||..+.++-.-+.
T Consensus 139 ea~~vy~gLlcl~elfkayR 158 (970)
T COG5656 139 EANHVYTGLLCLEELFKAYR 158 (970)
T ss_pred chhHHHHHHHHHHHHHHHHh
Confidence 66788999999988876543
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.29 E-value=3.7e+02 Score=33.60 Aligned_cols=272 Identities=17% Similarity=0.216 Sum_probs=146.3
Q ss_pred HHHHhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeec------cCCC-hh
Q 001397 742 LMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTF------DSSS-PN 814 (1086)
Q Consensus 742 ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f------~~~s-~~ 814 (1086)
.+.||..|..- -|..+-.++-+.++.+....| +.++++|...-..|.+.++.-... +.+ +... |.
T Consensus 237 a~~ClvkIm~L-----yY~~m~~yM~~alfaitl~am--ks~~deValQaiEFWsticeEEiD-~~~e~~e~~d~~~~p~ 308 (859)
T KOG1241|consen 237 AFQCLVKIMSL-----YYEFMEPYMEQALFAITLAAM--KSDNDEVALQAIEFWSTICEEEID-LAIEYGEAVDQGLPPS 308 (859)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCch
Confidence 34555555541 144444466666777777777 478999999999999988864311 111 0011 11
Q ss_pred hHHHHHHHHH-HHHHHHHhhccCC-Ccchhhhh-hhhhHHHHHHHHHHhHhCCcccc--cccc--ccC-CCcHHHHHHHH
Q 001397 815 GILLFREVSK-LIVAYGSRVLSLP-NAADIYAY-KYKGMWICFTILARALAGNYVNF--GVFE--LYG-DRALSDALDIA 886 (1086)
Q Consensus 815 ~~~Lf~~~~~-ll~~y~~~~l~~~-~~~~~~~e-~~k~l~~ll~il~~~ls~~~vnf--g~~~--~y~-D~~~~~~l~~~ 886 (1086)
....-+-..+ ++-..-+ .+... ...+.++| ..|--..|+.++..+...+.+|- +..+ +-+ |..-.++..+.
T Consensus 309 ~~~fa~~a~~~v~P~Ll~-~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLE-LLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hhHHHHHHHhHhhHHHHH-HHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 1111111111 1111111 11121 12222222 24557789999999998888872 1111 112 33344555555
Q ss_pred HHHhhccChhhHHhhHHhHHHHHHH------------------HHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChH
Q 001397 887 LKMTLSIPLADILAFRKLTKAYFAF------------------LEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTN 948 (1086)
Q Consensus 887 l~l~l~ip~~dll~yPkl~~~~f~l------------------l~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~ 948 (1086)
|+..+.=|..+-+++ ..-.+.=.+ +.-+++..|+ +..|..+...++.++..|++. .+-
T Consensus 388 FGSIl~gp~~~~Lt~-iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e--~~~n~~~l~~~l~~l~~gL~D-ePr 463 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTP-IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE--AIINQELLQSKLSALLEGLND-EPR 463 (859)
T ss_pred HHhhhcCCchhhhhH-HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh--hcccHhhhhHHHHHHHHHhhh-Cch
Confidence 555554444332221 111111111 1222444443 345778889999999999976 577
Q ss_pred HHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccC---CCchhcchhhhHHHHhc
Q 001397 949 ISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFED---CGNQWSLSRPMLSLILI 1025 (1086)
Q Consensus 949 I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~---~~~~~~~s~~L~~LI~~ 1025 (1086)
|+..||-++-+|+..+|........ +.|. ..+|..++..++..-=..| .+..-++=.+|-.+|.+
T Consensus 464 va~N~CWAf~~Laea~~eA~~s~~q-t~~~-----------t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~ 531 (859)
T KOG1241|consen 464 VASNVCWAFISLAEAAYEAAVSNGQ-TDPA-----------TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN 531 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC-CCcc-----------chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence 9999999999999999987654311 1111 1234555555554432222 11122667899999999
Q ss_pred CHHHHHHHHHHHH
Q 001397 1026 SEQVFSDLKAQIL 1038 (1086)
Q Consensus 1026 ~~~~f~~l~~~li 1038 (1086)
.|+.+...+.++.
T Consensus 532 st~~vy~~v~~~~ 544 (859)
T KOG1241|consen 532 STDDVYPMVQKLT 544 (859)
T ss_pred CcHHHHHHHHHHH
Confidence 9988777665443
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.77 E-value=7.4e+02 Score=32.59 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=113.0
Q ss_pred HHHHHHhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeeccCCChhhHHHH
Q 001397 740 IGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLF 819 (1086)
Q Consensus 740 i~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~~Lf 819 (1086)
+..+|.+.+++.....+..-...|.-+.|.++.++...++. ++.+....+|+.+.|++..-..-+ .|.-.-+.
T Consensus 177 ~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~--~d~~~a~~~l~~l~El~e~~pk~l-----~~~l~~ii 249 (1075)
T KOG2171|consen 177 VAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD--GDDDAAKSALEALIELLESEPKLL-----RPHLSQII 249 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc--cchHHHHHHHHHHHHHHhhchHHH-----HHHHHHHH
Confidence 34567788888777533345677778888877777777764 555666777777777777421100 01100111
Q ss_pred HH-----------------HHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhC-Cccccccc--cccCCCcH
Q 001397 820 RE-----------------VSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAG-NYVNFGVF--ELYGDRAL 879 (1086)
Q Consensus 820 ~~-----------------~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~-~~vnfg~~--~~y~D~~~ 879 (1086)
+. ...++.++.+..-.. .++. -...-.-+..++++++....- +|.|=... +-++++.
T Consensus 250 ~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~-~k~~-~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~- 326 (1075)
T KOG2171|consen 250 QFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM-CKKL-ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPY- 326 (1075)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH-hhhc-hhhhccHHHHHHHhcCCcccchhhccccccccccccCcH-
Confidence 11 233444444321100 0000 011112233444444433321 11110000 0111111
Q ss_pred HHHHHHHHH-HhhccCh--------hhHHh-----hHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCC
Q 001397 880 SDALDIALK-MTLSIPL--------ADILA-----FRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL 945 (1086)
Q Consensus 880 ~~~l~~~l~-l~l~ip~--------~dll~-----yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~ 945 (1086)
.+..-.++ +-+.+|. +-+.. -+|.|++-.--|..+.|-+.+.... .+-.++..+..|++..
T Consensus 327 -~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~----~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 327 -RAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG----NLPKILPIVLNGLNDP 401 (1075)
T ss_pred -HHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH----HHHHHHHHHHhhcCCC
Confidence 11111222 1122221 22222 2566777777778888888887664 5678889999999999
Q ss_pred ChHHHhHHHHHHHHHHHHHHH
Q 001397 946 DTNISSQCAAAVDNLAAFYFN 966 (1086)
Q Consensus 946 ~~~I~~~~l~~l~~l~~~~~~ 966 (1086)
++.|--.+|.+|..+++-+--
T Consensus 402 hprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcH
Confidence 999999999999999987743
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=49.02 E-value=2.5e+02 Score=31.56 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=81.1
Q ss_pred HHHhhhccC--cccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh-cccChhhhhhhhhccCCCcchhhhhhhhhhhhhHH
Q 001397 28 NTLKCFSVN--TDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLDISNSCSQSTCVFAIYAFHVCVSLIT 104 (1086)
Q Consensus 28 ~~l~~f~~~--~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~-~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1086)
+.+..+... +++|...-.+|+++ +.|+.-.|+..|..++.. +.-...-..++-
T Consensus 93 ~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l----------------------- 148 (312)
T PF03224_consen 93 ELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEAL----------------------- 148 (312)
T ss_dssp HHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHH-----------------------
T ss_pred HHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHH-----------------------
Confidence 344455442 23676666666555 999999999999988777 222222112232
Q ss_pred HHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC--hhhhhHHHHHHHHHhhccchhHHHHHHHHH
Q 001397 105 YVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD--DRFRDLVKESTNFLSQATSDHYAIGLKILN 182 (1086)
Q Consensus 105 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~--~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~ 182 (1086)
+++++++.+.....+.-++.-.+++++.++|..=.-. |. .+.++.+...+..........|++++=
T Consensus 149 -----------~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 149 -----------PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp -----------HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHH
T ss_pred -----------HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 7778887764333334444556677777775321000 11 133444444442112223344445555
Q ss_pred HHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccc
Q 001397 183 QLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLS 247 (1086)
Q Consensus 183 ~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Ls 247 (1086)
..+..+=. ..+..+....+.+.. ++...+++++.... ++++.-++.++.++++
T Consensus 217 ~~ll~lWl------LSF~~~~~~~~~~~~---~i~~L~~i~~~~~K---EKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 217 QALLCLWL------LSFEPEIAEELNKKY---LIPLLADILKDSIK---EKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHH------HTTSHHHHHHHHTTS---HHHHHHHHHHH--S---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH------HhcCHHHHHHHhccc---hHHHHHHHHHhccc---chHHHHHHHHHHHHHh
Confidence 54444311 122233333454444 66666666666544 4566677777777764
No 24
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.90 E-value=7.1e+02 Score=31.82 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=79.3
Q ss_pred HHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHH
Q 001397 902 RKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAIN 981 (1086)
Q Consensus 902 Pkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 981 (1086)
.-++..++.+...- + ...-....+..+=+++...+.+.++..++.-+.++..++.-.-=..++...+..|...+
T Consensus 416 ~~l~~~~~~l~~~~----~--~~~~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~ 489 (727)
T PF12726_consen 416 LSLCEESQALLRGK----P--LQPAVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQ 489 (727)
T ss_pred HHHHHHHHHHhcCC----C--cCCcchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHH
Confidence 34566777776551 1 11112245566666667777788888888877777776654322112211122233222
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhccCCCc--------hhcchhhhHHHHhcCHHHHHHHHHHHHhc---CC---hhhHH
Q 001397 982 LARHIVECPTLFPEILKTLFEIVLFEDCGN--------QWSLSRPMLSLILISEQVFSDLKAQILTS---QP---VDQHQ 1047 (1086)
Q Consensus 982 l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~--------~~~~s~~L~~LI~~~~~~f~~l~~~li~~---q~---~~~~~ 1047 (1086)
..+.++.--+.+.++|. -+ .+++. +-.+++++.++++.-.+.-.+-+.+++.+ +. +..++
T Consensus 490 ~N~~~~~~~~~~~~il~----rl--s~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ 563 (727)
T PF12726_consen 490 FNKSLGQITDLISQILE----RL--SDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQA 563 (727)
T ss_pred HHHHHHHHHHHHHHHHH----HH--hcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 22222111111222221 11 11111 11567888888855554444445555544 11 33445
Q ss_pred HHHHHHHHHHhhhhcccChhhHHHHHHHH
Q 001397 1048 RLSVCFDKLMADVARSLDSKNRDKFTQNL 1076 (1086)
Q Consensus 1048 ~l~~aF~~L~~~i~~~l~~~nr~~F~~nl 1076 (1086)
-+...|..-+.++..++++-.+-++..-.
T Consensus 564 ll~~~~~~tL~ai~~~l~~~~~~~~~~p~ 592 (727)
T PF12726_consen 564 LLQSNFSPTLSAINWSLRQLTKLKFFEPC 592 (727)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhcch
Confidence 55555555555777766666665554333
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=41.14 E-value=86 Score=27.25 Aligned_cols=57 Identities=25% Similarity=0.243 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHH
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLK 65 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~ 65 (1086)
++.+.+.+-+.+++..|..|=..|.++. +++..+.....+ ++.++.++..|+.+|.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 4667777767788889999999998775 578899888988 68999999999988873
No 26
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=39.34 E-value=7e+02 Score=29.32 Aligned_cols=178 Identities=13% Similarity=0.168 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhc-cCcccH--------HHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChh
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFS-VNTDYI--------SQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQ 75 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~-~~~~~~--------~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~ 75 (1086)
+.+++ .++.++|+.+|.....+|...- +-++.- ......+..+..++..--.+.++...+.. ..+.++
T Consensus 135 i~~Ll-~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 135 IKKLL-ELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHH-HTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 33444 3345678899999988876522 222211 12233444566666666677777777766 234455
Q ss_pred hhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhh
Q 001397 76 LRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRF 155 (1086)
Q Consensus 76 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~ 155 (1086)
.+.-++ +-+.-=|-.-++-.| +..| .|++....++.+++...+...++ +-||-....
T Consensus 214 h~~fl~---------~vllPLh~~~~~~~y-----~~~L-~~~~~~f~~kdp~l~~~~i~~ll--------k~WP~t~s~ 270 (409)
T PF01603_consen 214 HKQFLR---------KVLLPLHKSPHLSSY-----HQQL-SYCVVQFLEKDPSLAEPVIKGLL--------KHWPKTNSQ 270 (409)
T ss_dssp HHHHHH---------HTTGGGGGSTGGGGT-----HHHH-HHHHHHHHHH-GGGHHHHHHHHH--------HHS-SS-HH
T ss_pred HHHHHH---------HHHHHHhcCCcHHHH-----HHHH-HHHHHHHHHhCchhHHHHHHHHH--------HhCCCCCch
Confidence 554433 000000111111111 1111 34444344555766666555554 679876432
Q ss_pred --hhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhh
Q 001397 156 --RDLVKESTNFLSQATS-DHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSL 212 (1086)
Q Consensus 156 --~~~i~~v~~~~~~~~~-~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L 212 (1086)
--|+.++...+....+ +-..+.-.++.-+...++++. ...-.++..-+.++.+
T Consensus 271 Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h----~qVAErAl~~w~n~~~ 326 (409)
T PF01603_consen 271 KEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPH----FQVAERALYFWNNEYF 326 (409)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS----HHHHHHHHGGGGSHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHCCHHH
Confidence 3588888887753332 445566667777777777765 2333444444444433
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=37.85 E-value=4.2e+02 Score=27.90 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHH
Q 001397 932 MHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFN 966 (1086)
Q Consensus 932 ~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~ 966 (1086)
..++..+...++...+.|+..+|.++..++..+-+
T Consensus 52 ~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 52 RQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp H---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34445667777777788999999999999887743
No 28
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=37.72 E-value=5.8e+02 Score=27.94 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=41.4
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHh--hccchhHHHHHHHHHHHHHhccC
Q 001397 116 NYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLS--QATSDHYAIGLKILNQLVSEMNQ 190 (1086)
Q Consensus 116 ~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~--~~~~~~~~~gl~ll~~lv~e~~~ 190 (1086)
+.+++|..+|-.+ ..-+... +..+..++|...+.......+++.+.+-.. +-....+....+++..+++.+..
T Consensus 41 ~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~ 115 (262)
T PF14500_consen 41 QVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE 115 (262)
T ss_pred HHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 5666766666332 3334444 666666677766554333344444433211 11235678888999999887643
No 29
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=37.48 E-value=3.4e+02 Score=29.79 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc-ccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhh
Q 001397 211 SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSF-DFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYA 289 (1086)
Q Consensus 211 ~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw-~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~ 289 (1086)
.++++|=.++..|+.... .-...+|+++.++|.= |+. |+...+...-..|..|. .-.-+.+-++++.-.
T Consensus 4 ~~pQlFW~~vAcL~S~~E----~EF~~aL~lL~~~l~k~dl~----~~~~~~~L~~~~p~~we-~~~f~Glq~Ll~KGL- 73 (262)
T PF14225_consen 4 LFPQLFWTAVACLESIHE----HEFLEALSLLNKLLDKLDLD----DPDVRDVLESSQPQLWE-WGNFEGLQPLLLKGL- 73 (262)
T ss_pred hhhHHHHHHHHhhcCCcH----HHHHHHHHHHHHHHhhcCCc----hHHHHHHHHHhCCcccc-CCCchhHHHHHhCcc-
Confidence 378889999999887542 3456788888887752 211 11112222234566665 112244666665433
Q ss_pred hcCCccHHHHHHHHHHHhcccc-cCCCChHHHHHHHHHHHHHHHHHHhcccc---CCCchhHHHHHHHHhhhhhhcchhh
Q 001397 290 ITEAPLSKEALECLVRLASVRR-SLFTNDAARSKFLAHLMTGTKEILQTGQG---LADHDNYHEYCRLLGRFRVNYQLSE 365 (1086)
Q Consensus 290 ~~~~~~~~~~l~cL~~l~sl~~-s~f~~~~~~~~~l~~~~~~i~~il~~~~~---l~~~~~~~~~c~ll~rl~~~~~l~~ 365 (1086)
..+.....+++.|.++..+.. .++.+.+. +++-.++..+..++..-.. +...+.-.+.+..+.++..+.+...
T Consensus 74 -~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~--rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~ 150 (262)
T PF14225_consen 74 -RSSSTYELTLRLLSRLTPLPDDPLIGDSQS--RLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPN 150 (262)
T ss_pred -CCCCcHHHHHHHHHHHhcCCCccccCCCCc--cHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCcc
Confidence 234556788888888888763 35544323 5666677766666553211 1111234478888888888877776
Q ss_pred hhcc
Q 001397 366 LVNV 369 (1086)
Q Consensus 366 L~~~ 369 (1086)
|.++
T Consensus 151 La~i 154 (262)
T PF14225_consen 151 LARI 154 (262)
T ss_pred HHHH
Confidence 6654
No 30
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=37.19 E-value=7.8e+02 Score=29.23 Aligned_cols=100 Identities=10% Similarity=0.108 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhc--CCChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHhhhHhhhhccc--hhHHHHHHH
Q 001397 690 TFYYTIGWLIFM--EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSR--RTYGLLFDW 765 (1086)
Q Consensus 690 ~~~~al~~l~~~--~~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~~--~~~~~lf~~ 765 (1086)
-+++++-|++.. +.-..+...+++-+...+..++.|| .||.. --.+++.+..+++-+... .....+-+.
T Consensus 45 ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP----snP~F---nHylFEsi~~lir~~~~~~~~~v~~~E~~ 117 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP----SNPRF---NHYLFESIGALIRFVCEADPEAVSQFEEA 117 (435)
T ss_dssp HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-------HHH---HHHHHHHHHHHHHHS-GGGHH---HHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC----CCcch---hhhHHHHHHHHHHhccCCChhHHHHHHHH
Confidence 467788887654 2223456777777888888888777 23332 223445554444443221 112233334
Q ss_pred HhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcc
Q 001397 766 LYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNK 802 (1086)
Q Consensus 766 i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk 802 (1086)
+ +|.+..+++. +-.+.+.-++.+++-+++.+
T Consensus 118 L----~P~f~~ILq~--dV~EF~PYvfQIla~Lle~~ 148 (435)
T PF03378_consen 118 L----FPPFQEILQQ--DVQEFIPYVFQILAQLLELR 148 (435)
T ss_dssp H----HHHHHHHHHT--T-TTTHHHHHHHHHHHHHHS
T ss_pred H----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHcC
Confidence 4 4445555543 44577777778888777755
No 31
>PF05536 Neurochondrin: Neurochondrin
Probab=35.49 E-value=9.2e+02 Score=29.57 Aligned_cols=234 Identities=19% Similarity=0.189 Sum_probs=121.2
Q ss_pred CcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchh
Q 001397 36 NTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVG 115 (1086)
Q Consensus 36 ~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1086)
.+..+++|..+|.... +.-+|.|+-.+++++.......+.+..+..-.|-
T Consensus 3 ~~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~----------------------------- 52 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGF----------------------------- 52 (543)
T ss_pred chHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCh-----------------------------
Confidence 4677899999998888 9999999999998887632333333233322221
Q ss_pred hHHHHHHHhcCC-C-chHHHHHHH-HHHHHHHHhhccCCC-hhhhhHHHH---HHHHHhhccc-hhHHHHHHHHHHHHHh
Q 001397 116 NYLINYLAKRGP-E-LQSFVTASL-IQLLCRLTKFGWFDD-DRFRDLVKE---STNFLSQATS-DHYAIGLKILNQLVSE 187 (1086)
Q Consensus 116 ~~ll~~l~~~~~-~-~~~~v~~~l-~~~~a~i~K~~w~~~-~~~~~~i~~---v~~~~~~~~~-~~~~~gl~ll~~lv~e 187 (1086)
.|+-..+.+... + .++.....+ +.+++.... .++ ....++++. +...+.+.+. +...-.+..|..++
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~---~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-- 127 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR---DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-- 127 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC---ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH--
Confidence 777776665321 1 122222222 223333322 222 111234444 4455544444 55666677777776
Q ss_pred ccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccccccccCCCCCCCCCcccccc
Q 001397 188 MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQI 267 (1086)
Q Consensus 188 ~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~ 267 (1086)
+.+. | ++. -.+.+.++.+++.... + +...+.++.++...++.. +
T Consensus 128 -s~~~-G------~~a--Ll~~g~v~~L~ei~~~---~------~~~~E~Al~lL~~Lls~~--~--------------- 171 (543)
T PF05536_consen 128 -SSPE-G------AKA--LLESGAVPALCEIIPN---Q------SFQMEIALNLLLNLLSRL--G--------------- 171 (543)
T ss_pred -cCcH-h------HHH--HHhcCCHHHHHHHHHh---C------cchHHHHHHHHHHHHHhc--c---------------
Confidence 2211 1 111 1334556666666555 1 223456667776666532 1
Q ss_pred CccccccccC-cchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHhcccc
Q 001397 268 PSAWRPVLED-PSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQG 340 (1086)
Q Consensus 268 P~sW~~~l~~-~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~~~~~~~~~l~~~~~~i~~il~~~~~ 340 (1086)
+..|...-.. ..++..+-..+........-.+++.|..+-+-....-.......+++..+..|+..+++++.+
T Consensus 172 ~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~ 245 (543)
T PF05536_consen 172 QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLT 245 (543)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCC
Confidence 1122211000 123333333444344555666677776665543211001124568999999999999988665
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=35.40 E-value=8.6e+02 Score=29.25 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHhhccCCChhhhh-HHHHHHHHHhhccchhHHHHHHHHHHH
Q 001397 130 QSFVTASLIQLLCRLTKFGWFDDDRFRD-LVKESTNFLSQATSDHYAIGLKILNQL 184 (1086)
Q Consensus 130 ~~~v~~~l~~~~a~i~K~~w~~~~~~~~-~i~~v~~~~~~~~~~~~~~gl~ll~~l 184 (1086)
.++||.+.+.+++++.|.. ++.- +. +++.+.+++...++.....++.++.++
T Consensus 127 ~~~VRk~A~~~l~~i~~~~-p~~~--~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 127 SPYVRKKAALALLKIYRKD-PDLV--EDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHC-HCCH--HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 4599999999999999983 3331 23 688888888545555666677777666
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.32 E-value=1.6e+02 Score=25.41 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHH
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSL 63 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L 63 (1086)
++.+.+.+ ..+++..|.+|=..|..+. +++.++.+...++++.+..++..|+.+|
T Consensus 33 ~~~L~~~l-~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELL-KDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHH-TSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 44455544 6678888999999999886 5889999999999999988899888876
No 34
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=32.05 E-value=5.3e+02 Score=31.66 Aligned_cols=145 Identities=15% Similarity=0.279 Sum_probs=83.7
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCC-----hHHHhHHHHHHHHHHHHHHHhhccCCCCC
Q 001397 901 FRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLD-----TNISSQCAAAVDNLAAFYFNNITMGEAPT 975 (1086)
Q Consensus 901 yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~-----~~I~~~~l~~l~~l~~~~~~~~~~~~~~~ 975 (1086)
|..++..|++=|+.+-. .......-+..+..|||+.- .+--+.|++.+..++.++.+.+ ++.+-.
T Consensus 79 F~sVsdRF~~eL~~~~~---------~~~~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h-~~~~ik 148 (552)
T PF14222_consen 79 FVSVSDRFIAELEKLRK---------DSNDAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH-KKSDIK 148 (552)
T ss_pred ChHHHHHHHHHHHHhcc---------cCCchHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc-hhhHHH
Confidence 45555666665554443 11133456677889998854 5677889999999999998874 221111
Q ss_pred ChhHHHHHHHhhc---------CCCcHHHHHHHHHHHHh--ccCCCchhcchhhhHHHH-hcCHH-H----HH-HHHHHH
Q 001397 976 SPAAINLARHIVE---------CPTLFPEILKTLFEIVL--FEDCGNQWSLSRPMLSLI-LISEQ-V----FS-DLKAQI 1037 (1086)
Q Consensus 976 ~~~~~~l~~~~~~---------~~~~~~~~l~~ll~~ll--~~~~~~~~~~s~~L~~LI-~~~~~-~----f~-~l~~~l 1037 (1086)
...++.+.+++.+ +...|.+.+..+...+. ..+ ...|..+=||...+ |+.|. . |. ++.+.+
T Consensus 149 ~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K-~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~ 227 (552)
T PF14222_consen 149 HAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK-PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESL 227 (552)
T ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC-cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 1233333333322 23478888887776654 233 45688888888777 55553 3 33 344444
Q ss_pred HhcCC-hhhHHHHHHHHHHH
Q 001397 1038 LTSQP-VDQHQRLSVCFDKL 1056 (1086)
Q Consensus 1038 i~~q~-~~~~~~l~~aF~~L 1056 (1086)
...-. ...+.-..++...|
T Consensus 228 ~~klKdk~~r~~~l~~l~RL 247 (552)
T PF14222_consen 228 ISKLKDKETRPVALECLSRL 247 (552)
T ss_pred HhhcCChhhhHHHHHHHHHH
Confidence 44322 33344444555555
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=29.47 E-value=1.3e+02 Score=23.75 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=39.3
Q ss_pred HHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHH
Q 001397 902 RKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNL 960 (1086)
Q Consensus 902 Pkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l 960 (1086)
|.++.+-...|..+.+.+++.+. +....++..|...++..+.+|-..++.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45566666666556666665433 36678888888999988889988888888754
No 36
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=27.81 E-value=1.5e+02 Score=30.13 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHH
Q 001397 903 KLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFY 964 (1086)
Q Consensus 903 kl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~ 964 (1086)
++|+.-|+++..+.+.++..+ + ...+++.+..|++- +.+|-..|+..+..++...
T Consensus 42 elRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 478889999988888666433 3 45668899999988 9999999999888886543
No 37
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=25.82 E-value=1.1e+03 Score=27.56 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHH
Q 001397 157 DLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQE 236 (1086)
Q Consensus 157 ~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~ 236 (1086)
.+++.+.+.+. +++.....-+-+..++.+.. .-++...|-.++.-++ +++|...+..|-+.-.+.......
T Consensus 271 ~~~~~L~~lL~--~~~~g~~aA~~f~il~~d~~---~~l~~~~~a~vklLyk----QR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLS--SPELGQQAAKAFGILLSDSD---DVLNKENHANVKLLYK----QRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred HHHHHHHHHhC--ChhhHHHHHHHHhhHhcCcH---HhcCccccchhhhHHh----HHHHHHHHHHHHHHHhhcChhhHH
Confidence 56666666663 33334444455555555532 1223344555555544 355555555543332111111222
Q ss_pred HHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCCC
Q 001397 237 LALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTN 316 (1086)
Q Consensus 237 ~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~~ 316 (1086)
..|..+-.+|.+-+..-...+ =++++.++.+.....++.....+|++|..+.. .+
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~-------------------l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~------~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPE-------------------LPTLLPLLLQSLSLPDADVLLSSLETLKMILE------EA 396 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHH-------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH------cC
Confidence 344444455554442211000 04577777777665667788888888888764 33
Q ss_pred hHHHHHHHHHHHHHHH
Q 001397 317 DAARSKFLAHLMTGTK 332 (1086)
Q Consensus 317 ~~~~~~~l~~~~~~i~ 332 (1086)
++....|+..++..+.
T Consensus 397 ~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 397 PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555667777766654
No 38
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=25.77 E-value=1.1e+03 Score=27.34 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=33.8
Q ss_pred hhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHH
Q 001397 900 AFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAA 956 (1086)
Q Consensus 900 ~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~ 956 (1086)
..|=++-...+++....+ .+|++.+..++..+...|++.+..|-.-++.+
T Consensus 320 ~~piLka~aik~~~~Fr~-------~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 320 SHPILKADAIKFLYTFRN-------QLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHHHHHHHGG-------GS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHh-------hCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 566666666666544433 47889999999999999999887766665544
No 39
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=25.36 E-value=1e+02 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHHHHHHhhcCCChHHHhHHHHHHHHHHHH
Q 001397 934 IVGSLESGLKGLDTNISSQCAAAVDNLAAF 963 (1086)
Q Consensus 934 li~sl~~gl~~~~~~I~~~~l~~l~~l~~~ 963 (1086)
++..+..++++.+++|-..++.++..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 355677888999999999999999998764
No 40
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=24.88 E-value=1.4e+02 Score=30.35 Aligned_cols=69 Identities=13% Similarity=0.248 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHhccc-ccCCCChHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhhcc
Q 001397 294 PLSKEALECLVRLASVR-RSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQ 362 (1086)
Q Consensus 294 ~~~~~~l~cL~~l~sl~-~s~f~~~~~~~~~l~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~~~ 362 (1086)
.-...++++|.++..+. .-+|....++..|+.-+.+-.-.+++++..+.+...-..++++|+-.+..|.
T Consensus 96 ~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~if~il~~~vk~h~ 165 (171)
T PF12922_consen 96 SQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAIFRILGTAVKKHN 165 (171)
T ss_pred HHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHHHHHHHHHHHHcc
Confidence 35677888888888877 4578887889999998888777888876666666555568888888887774
No 41
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=24.38 E-value=1.5e+02 Score=28.75 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHH
Q 001397 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQF 45 (1086)
Q Consensus 4 ~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~ 45 (1086)
++-+..++.++|+.++.+.+++.-+-|.+|.-+|-+|...++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq 56 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ 56 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH
Confidence 566788999999999888888888889999999999987665
No 42
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=24.14 E-value=3.3e+02 Score=31.67 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHH----HHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhc
Q 001397 850 MWICFTILARALAGNYVNFGVFELYGDRALSDALDIA----LKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILN 925 (1086)
Q Consensus 850 l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~----l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~ 925 (1086)
+.+.+.++.|.+-++ |.--.++.+.+ +..++.|-..+-....|+-.+||.+++..++.--++..+
T Consensus 153 ~~v~~g~l~Ny~l~~-----------~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d 221 (604)
T KOG4500|consen 153 SAVAFGVLHNYILDS-----------RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKD 221 (604)
T ss_pred HHHHHHHHHHhhCCc-----------HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhcc
Confidence 456777888877544 22233444442 344556777777788899999999999999977766665
Q ss_pred C
Q 001397 926 L 926 (1086)
Q Consensus 926 l 926 (1086)
.
T Consensus 222 ~ 222 (604)
T KOG4500|consen 222 C 222 (604)
T ss_pred c
Confidence 4
No 43
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=23.24 E-value=9.6e+02 Score=26.27 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeecc--CCChhhHHHHHHHHHHHHHHHHhhc
Q 001397 773 LLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFD--SSSPNGILLFREVSKLIVAYGSRVL 834 (1086)
Q Consensus 773 ~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~--~~s~~~~~Lf~~~~~ll~~y~~~~l 834 (1086)
.++.++-.|.+++.++..++|+++.++..-. .+ ++ +.+.++..-|.+..+.+..|.+.++
T Consensus 45 DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~-~~-~~~~~~~~~~~~~~~~l~~~l~~yK~afl 106 (266)
T PF04821_consen 45 DLIPILISYKDDDKLFLACLRLLVNLTWPIE-LL-VESQPKDKNQRRNIPELLKYLQSYKEAFL 106 (266)
T ss_pred hHHHHHHhccCchHHHHHHHHHHHHhCCCHH-Hh-ccCCCCChHHHHHHHHHHHHHHHHHHHHc
Confidence 4445666788899999999999999986321 01 11 1234455677777777777765443
No 44
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.47 E-value=2.6e+03 Score=31.82 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=70.2
Q ss_pred chhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHHHHHhhccCh-----------------hhHHhhH
Q 001397 840 ADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPL-----------------ADILAFR 902 (1086)
Q Consensus 840 ~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~-----------------~dll~yP 902 (1086)
...|.+.+..+-.+++.++++++|-- -+.--+.+.++|+.+|. .-+-..|
T Consensus 668 d~ly~e~lplL~~lLe~ln~l~~~~~-------------s~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs~ 734 (3550)
T KOG0889|consen 668 DSLYREVLPLLPNLLEILNHLLSSFH-------------SQGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGSP 734 (3550)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccC-------------ccchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCCH
Confidence 44588888888899999999987431 11222334444444443 3334467
Q ss_pred HhHHHHHHHHHHHHh-hhhhhHhcCCHHHHHHHHHHHHHhhcCC-ChHHHhHHHHHHHHHHHHHHH
Q 001397 903 KLTKAYFAFLEVLFS-SHITFILNLNTNTFMHIVGSLESGLKGL-DTNISSQCAAAVDNLAAFYFN 966 (1086)
Q Consensus 903 kl~~~~f~ll~~l~e-~~~~~l~~l~~~~f~~li~sl~~gl~~~-~~~I~~~~l~~l~~l~~~~~~ 966 (1086)
++..+=+..++.... .-|+++...=......++.+|-.+++-. +.+++..|..+++.+.+.--+
T Consensus 735 ~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~NRq 800 (3550)
T KOG0889|consen 735 ELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGGRNRQ 800 (3550)
T ss_pred HHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCcchh
Confidence 777777777765544 3455554322233445555555555554 567888899999998876655
No 45
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.15 E-value=2.6e+02 Score=36.66 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=69.0
Q ss_pred cchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHh
Q 001397 88 TCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLS 167 (1086)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~ 167 (1086)
+|+=.++++.||--+=-.=+..|.-++|.-+++-+.+|..+...|||.++++++.+|..+.-.-.....++++.+..=+.
T Consensus 330 navlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~ 409 (1251)
T KOG0414|consen 330 NAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLE 409 (1251)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccc
Confidence 66777887877766666666778888889899999999999999999999999999997765433323345555443332
Q ss_pred hccchhHHHHHHHHHHHHH
Q 001397 168 QATSDHYAIGLKILNQLVS 186 (1086)
Q Consensus 168 ~~~~~~~~~gl~ll~~lv~ 186 (1086)
..+.-.+.-+++++.-+..
T Consensus 410 DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 410 DKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 2233345555566655554
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=21.66 E-value=1.2e+03 Score=29.70 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=48.8
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 001397 116 NYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 186 (1086)
Q Consensus 116 ~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~ 186 (1086)
+|+...+.+.-.+..+|||.+...+++++.+.. ++.-+...+++++..++...++....-++..|.++.+
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 777777777667778999999999999998743 1211122577888887754555566666667777654
No 47
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=21.23 E-value=1e+03 Score=26.26 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=90.0
Q ss_pred HHHhhccCCC-hhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHH
Q 001397 143 RLTKFGWFDD-DRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLT 221 (1086)
Q Consensus 143 ~i~K~~w~~~-~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~ 221 (1086)
.-+++.|.+. |+ -+++-+-.++...+++....||++|..++....... -..++++++.++|+-++.
T Consensus 106 ~~~~~~~i~~~~~--liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-----------~~~L~~tGl~~v~~~al~ 172 (282)
T PF10521_consen 106 SQLDRPWISQHWP--LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-----------WDILRRTGLFSVFEDALF 172 (282)
T ss_pred hcCCcchHHHhhh--HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-----------hHHHHHcChHHHHHHHHH
Confidence 3566666553 54 466667777765567889999999999998876533 235777888888877766
Q ss_pred HHHhhh----h-hhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhh-c---C
Q 001397 222 SLGQLK----S-DVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAI-T---E 292 (1086)
Q Consensus 222 ~L~~~~----~-~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~-~---~ 292 (1086)
-.=-.. + +....+...+..++..++.=.+... ...+....+.-+-+-++..+.. . .
T Consensus 173 ~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~---------------~~~r~~~l~~~l~e~IL~~~~~~~~~~~ 237 (282)
T PF10521_consen 173 PCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDD---------------SNPRSTWLDKILREGILSSMEHESSFSY 237 (282)
T ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCC---------------cccchHHHHHHHHHHHhhhceeccccCc
Confidence 432211 1 1112455555555555443222110 0111111222222323332221 2 2
Q ss_pred CccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHhccc
Q 001397 293 APLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQ 339 (1086)
Q Consensus 293 ~~~~~~~l~cL~~l~sl~~s~f~~~~~~~~~l~~~~~~i~~il~~~~ 339 (1086)
+.++...++-+..+...=| ..-.+|+++++..+.+++.++.
T Consensus 238 ~~l~~~ll~~l~~~i~~lG------i~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 238 PRLRTVLLQQLPPIIDELG------ISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred hhHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCC
Confidence 5566666666666654221 2467788888888877777644
No 48
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.08 E-value=1.1e+03 Score=31.97 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=100.9
Q ss_pred ccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHh-hcCCCh
Q 001397 869 GVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESG-LKGLDT 947 (1086)
Q Consensus 869 g~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~g-l~~~~~ 947 (1086)
|.+-+|+++.+-+.+..+++ .+-.+..|+.+.=|.-++.++.+ ++..||.+-+..+|+++..- =+-.|.
T Consensus 874 ge~ll~~w~sV~eml~s~~d-------~~~ekek~ivrlgf~~lrlIssD---fLqSLp~sci~~lidtl~~fs~Qktdl 943 (1610)
T KOG1848|consen 874 GEHLLHGWQSVFEMLRSATD-------FGSEKEKKIVRLGFSCLRLISSD---FLQSLPTSCILDLIDTLLVFSRQKTDL 943 (1610)
T ss_pred chhhccccHHHHHHHHHHhh-------ccchhhhhHHHhhhhhhhhhhhc---chhcCChHHHHHHHHHHHHHHhhhccc
Confidence 44556676666555554433 44556677788888888887665 66789999999999998744 444678
Q ss_pred HHHhHHHHHHHHHHHHHHHhhcc-CCCCCC-hhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchh-----cchhhhH
Q 001397 948 NISSQCAAAVDNLAAFYFNNITM-GEAPTS-PAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW-----SLSRPML 1020 (1086)
Q Consensus 948 ~I~~~~l~~l~~l~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~-----~~s~~L~ 1020 (1086)
+|+-.+..-+=.+..|+++-+.+ ++.... .....+.+ =.+++.++.+-|..++-..+.+-|..+| .|.+++|
T Consensus 944 NISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s-s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlf 1022 (1610)
T KOG1848|consen 944 NISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS-SMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLF 1022 (1610)
T ss_pred cccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc-cccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHH
Confidence 89888887777888888874432 211110 00001111 1235566666666666666655555555 6788888
Q ss_pred HHH-----hcCHHHHH----HHHHHHHhcCC
Q 001397 1021 SLI-----LISEQVFS----DLKAQILTSQP 1042 (1086)
Q Consensus 1021 ~LI-----~~~~~~f~----~l~~~li~~q~ 1042 (1086)
-++ ++-+..|. ++..-++.+||
T Consensus 1023 ri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~ 1053 (1610)
T KOG1848|consen 1023 RIFNSHGSKLGTNAWASCCWLVIMPLLDSQP 1053 (1610)
T ss_pred HHHhhhcccCChhHHHHHHHHHHHHHhcccc
Confidence 887 34444444 44455666555
Done!