Query 001397
Match_columns 1086
No_of_seqs 166 out of 423
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 02:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 1.8E-53 6.2E-58 540.7 74.0 902 3-1084 26-1025(1073)
2 4hat_C Exportin-1; heat repeat 100.0 6.1E-50 2.1E-54 512.2 75.9 895 3-1084 14-1005(1023)
3 2x19_B Importin-13; nuclear tr 100.0 4.1E-40 1.4E-44 428.8 65.2 877 3-1085 22-953 (963)
4 3m1i_C Exportin-1; heat repeat 100.0 1.8E-35 6.1E-40 387.0 78.8 902 3-1085 14-1006(1049)
5 2x1g_F Cadmus; transport prote 100.0 1.9E-29 6.6E-34 328.3 66.7 883 3-1086 5-966 (971)
6 3ibv_A Exportin-T; karyopherin 100.0 1.3E-28 4.3E-33 315.4 70.6 903 3-1086 4-978 (980)
7 3a6p_A Exportin-5; exportin-5, 99.9 3.1E-22 1E-26 263.0 66.6 594 3-721 9-682 (1204)
8 1w9c_A CRM1 protein, exportin 99.8 5.2E-17 1.8E-21 176.0 25.4 249 789-1084 47-317 (321)
9 4fdd_A Transportin-1; heat rep 99.7 1E-10 3.6E-15 149.7 66.9 778 2-1060 10-822 (852)
10 1wa5_C Importin alpha RE-expor 99.6 4.1E-09 1.4E-13 136.5 75.3 616 1-801 1-671 (960)
11 2bpt_A Importin beta-1 subunit 99.4 3.8E-07 1.3E-11 116.5 64.4 144 5-189 4-167 (861)
12 1qgr_A Protein (importin beta 98.9 0.00039 1.3E-08 88.7 61.3 140 7-188 3-161 (876)
13 1ibr_B P95, importin beta-1 su 98.4 2.5E-06 8.4E-11 100.3 16.3 231 7-314 3-252 (462)
14 1u6g_C TIP120 protein, CAND1; 91.5 9 0.00031 50.3 23.2 241 5-336 6-265 (1230)
15 4db8_A Armadillo-repeat protei 65.4 1.2E+02 0.0041 30.7 15.8 238 36-358 10-250 (252)
16 1wa5_B Importin alpha subunit; 60.0 2.4E+02 0.0083 32.4 21.1 268 8-360 133-413 (530)
17 4b8j_A Importin subunit alpha- 55.5 2.8E+02 0.0096 31.7 22.9 265 6-359 75-358 (528)
18 4hxt_A De novo protein OR329; 46.5 2.3E+02 0.008 28.1 15.9 228 7-311 4-244 (252)
19 2jdq_A Importin alpha-1 subuni 38.6 4.3E+02 0.015 29.0 23.4 270 7-360 66-348 (450)
20 1wa5_B Importin alpha subunit; 36.1 5.3E+02 0.018 29.3 22.6 268 7-359 89-370 (530)
21 1b3u_A Protein (protein phosph 35.8 4.1E+02 0.014 30.4 15.4 62 3-67 8-76 (588)
22 1b3u_A Protein (protein phosph 35.0 5.6E+02 0.019 29.2 19.7 72 116-188 163-234 (588)
23 3gjx_A Exportin-1; transport, 33.0 7.4E+02 0.025 31.5 17.5 80 278-361 780-861 (1073)
24 2qk1_A Protein STU2; STU2P, XM 31.1 4.4E+02 0.015 26.8 18.4 139 15-189 25-178 (249)
25 4fdd_A Transportin-1; heat rep 30.6 8.1E+02 0.028 29.8 37.2 60 901-964 642-701 (852)
26 2vgl_B AP-2 complex subunit be 28.2 2.1E+02 0.0072 33.7 10.9 70 116-186 120-189 (591)
27 2jdq_A Importin alpha-1 subuni 25.1 7E+02 0.024 27.2 23.6 268 7-359 22-305 (450)
28 4b8j_A Importin subunit alpha- 24.4 8E+02 0.027 27.7 23.2 269 7-360 119-401 (528)
29 2x19_B Importin-13; nuclear tr 23.8 1.1E+03 0.037 29.0 29.2 23 946-968 786-808 (963)
30 4ffb_C Protein STU2; tubulin f 23.6 6.1E+02 0.021 26.0 16.2 113 44-192 61-174 (278)
31 2vgl_A Adaptor protein complex 23.5 3.5E+02 0.012 32.0 11.7 59 127-186 158-216 (621)
32 4hxt_A De novo protein OR329; 22.0 5.7E+02 0.019 25.1 17.8 236 40-361 4-243 (252)
33 1wa5_C Importin alpha RE-expor 21.0 1.2E+03 0.043 28.7 21.8 55 901-962 471-525 (960)
34 4db6_A Armadillo repeat protei 20.9 5.5E+02 0.019 24.5 11.4 137 13-186 19-167 (210)
35 3ul1_B Importin subunit alpha- 20.5 4.2E+02 0.014 30.3 11.3 61 7-68 59-130 (510)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1.8e-53 Score=540.70 Aligned_cols=902 Identities=15% Similarity=0.231 Sum_probs=616.6
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
+++.||+++..+|+| ++++|++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|++ +.+|+++|.+|
T Consensus 26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 589999999999987 478999999999999999999999999999999999999999999999988 67999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCC-----chHHHHHHHHHHHHHHHhhccCCChhh
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPE-----LQSFVTASLIQLLCRLTKFGWFDDDRF 155 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~v~~~l~~~~a~i~K~~w~~~~~~ 155 (1086)
| +++++|+.+.+.+ .++.+++|+++++|.|+|++||+.|+
T Consensus 105 R----------------------------------~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp- 149 (1073)
T 3gjx_A 105 K----------------------------------KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP- 149 (1073)
T ss_dssp H----------------------------------HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-
T ss_pred H----------------------------------HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-
Confidence 9 9999999864222 24677799999999999999999998
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCC-CCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPN-PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRL 234 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~-~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l 234 (1086)
++++++.+.+ +.++.++..+|.+|..+.+|....+ ..++..+.++.+-.++.. ++.|++++..+|++... ..+
T Consensus 150 -~fi~dLv~~~-~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~---~~l 223 (1073)
T 3gjx_A 150 -TFISDIVGAS-RTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQN---APL 223 (1073)
T ss_dssp -THHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCC---HHH
T ss_pred -HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCC---HHH
Confidence 8999999887 4566788899999999999964321 113445556667788875 99999999999876432 458
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCC
Q 001397 235 QELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLF 314 (1086)
Q Consensus 235 ~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f 314 (1086)
+..+|+++..+++|...+. +.+++++++++..+. ..+.++..|++||.++++.+.+-+
T Consensus 224 v~~~L~~L~~~~sWI~i~~---------------------i~~~~ll~~L~~~~L-~~~~~r~aA~dcL~eIv~k~~~~~ 281 (1073)
T 3gjx_A 224 VHATLETLLRFLNWIPLGY---------------------IFETKLISTLIYKFL-NVPMFRNVSLKCLTEIAGVSVSQY 281 (1073)
T ss_dssp HHHHHHHHHHHTTTSCTHH---------------------HHSSSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHSCSGGG
T ss_pred HHHHHHHHHHHHHhcCHHH---------------------hccchHHHHHHHHhc-CChHHHHHHHHHHHHHHhccccch
Confidence 8899999999999987654 566779998853332 567899999999999999753211
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccccC---------CCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHH
Q 001397 315 TNDAARSKFLAHLMTGTKEILQTGQGL---------ADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLK 385 (1086)
Q Consensus 315 ~~~~~~~~~l~~~~~~i~~il~~~~~l---------~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~~fT~~ 385 (1086)
++.-...+..+++.+..+++....+ .|++....+|+++..+.++|. ..+.+.+.+.+.+...-++...
T Consensus 282 --~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-~lIe~~p~~~~~l~~~l~~ll~ 358 (1073)
T 3gjx_A 282 --EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-QLLEKRLNLREALMEALHYMLL 358 (1073)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-HHHhcCccchHHHHHHHHHHHH
Confidence 2334455666666666666543221 234556679999999888883 5555555544444444444444
Q ss_pred hhhhcccccCcHHHHHHHHHHhhcccCCcCC-----CC-----------cchhhhhHHHHH--HHHHhhhhcccccccC-
Q 001397 386 SLQSWQWASSSVYYLLGLWSRLVTSVPYLKG-----DA-----------PSLLDEFVPKIT--EGFITSRFNSVQAGFP- 446 (1086)
Q Consensus 386 ~l~~~~~~~~s~~~LL~~W~~lv~~~~~~~~-----~~-----------~~~l~~~~~~I~--~~yi~srl~~~~~~~~- 446 (1086)
+-.. .+.+.+++++++|..++..+ |.+. .. +.....|.+.+. ...+.+||++|+++..
T Consensus 359 ~s~~--~d~ei~kitf~fW~~L~~~L-~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~ 435 (1073)
T 3gjx_A 359 VSEV--EETEIFKICLEYWNHLAAEL-YRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVV 435 (1073)
T ss_dssp HTTC--SCHHHHHHHHHHHHHHHHHH-HHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEE
T ss_pred HhCC--CcHHHHHHHHHHHHHHHHHH-HhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 3322 24567899999999998865 2111 01 112222443332 3447899999987642
Q ss_pred C-CCCCC---CCCcH---HHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 001397 447 D-DLSDN---PLDNV---ELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVH 519 (1086)
Q Consensus 447 e-e~~e~---~~~d~---~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~ 519 (1086)
| |.+|- ..+|. ..++.+.+++.++++++++++.+++.+.+.+. ..+++++|..++ .++|.++
T Consensus 436 e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~-------~~~~~~sW~~le----a~~~aig 504 (1073)
T 3gjx_A 436 ENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQ-------VNGTEWSWKNLN----TLCWAIG 504 (1073)
T ss_dssp ECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-------HTSCCCCHHHHH----HHHHHHH
T ss_pred CcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------hcCCCCCHHHHh----HHHHHHH
Confidence 2 22221 12333 35567889999999999999999988888763 223456776665 8999997
Q ss_pred HH-HHHhccccccCCCccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchH
Q 001397 520 II-AAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSK 598 (1086)
Q Consensus 520 i~-g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~ 598 (1086)
-+ |++. ++.++ ..|+..+-.|+++.+..-. .-..+++..+++|-+.||.+....
T Consensus 505 aIag~~~----------~~~E~--~~Lp~vi~~Ll~L~e~~~~-----kd~k~~vas~i~~vlgrY~~wl~~-------- 559 (1073)
T 3gjx_A 505 SISGAMH----------EEDEK--RFLVTVIKDLLGLCEQKRG-----KDNKAIIASNIMYIVGQYPRFLRA-------- 559 (1073)
T ss_dssp HTTTSSC----------HHHHH--HHHHHHHHHHHHHHHHSCS-----HHHHHHHHHHHHHHHHHCHHHHHH--------
T ss_pred HHHCcCC----------ccccc--chHHHHHHHHhcccccccc-----cchhHHHHHHHHHHHhhhHHHHHh--------
Confidence 65 5442 22232 3466555555555532210 001233444555555555433320
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhh-hhc------chhHHHHHHhc
Q 001397 599 QLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKL-LLK------LDTIKFIVANH 671 (1086)
Q Consensus 599 ~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~-l~~------~~~~~~Ll~~~ 671 (1086)
+...+...+++++.-+. ..++.|.+.|.+-|..+++ .|+. ++. .|.+..+++..
T Consensus 560 --------------h~~~L~~vl~~L~~~m~--~~~~~vq~aA~~af~~i~~---~C~~~lv~~~~~e~~p~i~~il~~~ 620 (1073)
T 3gjx_A 560 --------------HWKFLKTVVNKLFEFMH--ETHDGVQDMACDTFIKIAQ---KCRRHFVQVQVGEVMPFIDEILNNI 620 (1073)
T ss_dssp --------------CHHHHHHHHHHHHHHTT--CCSTTHHHHHHHHHHHHHH---HTGGGGTSCCTTCSSCHHHHHHTSH
T ss_pred --------------CHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHH---HHHHHHhhccccccchHHHHHHHHH
Confidence 01123333333332221 2245666666666666666 4653 332 46778888765
Q ss_pred ccCCCCcccccccchhhHHHHHHHHHHHhcCC----ChHHHHHhhHHHHHHHHHhcc----CCCcccccHHHHHHHHHHH
Q 001397 672 TREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPLLQVFISLES----TPDSMFRTDAVKCALIGLM 743 (1086)
Q Consensus 672 ~~~~~~~l~~~~~~~~r~~~~~al~~l~~~~~----~~~~~~~~l~pl~~~~~~l~~----~~~~~~~~~~~~~~ii~ll 743 (1086)
.... .-+ + ++....+|+++|.++...+ ..++++.+|.|+.++|+++.. ++ ..+.+++..+.+..++
T Consensus 621 ~~~~-~~l--~--~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~-~~~~d~~~i~~l~~il 694 (1073)
T 3gjx_A 621 NTII-CDL--Q--PQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNV-DILKDPETVKQLGSIL 694 (1073)
T ss_dssp HHHH-TTC--C--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCG-GGGGCHHHHHHHHHHH
T ss_pred HHHH-Hhc--C--HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhccChHHHHHHHHHH
Confidence 4321 112 2 4677899999999997643 356899999999999999962 33 5677888788899999
Q ss_pred HHhhhHhhhhccchhHHHHHHHHhhhhhHHHH---Hhhhh-h-------cCCch------hHHHHHHHHHHHhhccccee
Q 001397 744 RDLRGIAMATNSRRTYGLLFDWLYPAHMPLLL---KGISH-W-------TDTPE------VTTPLLKFMAEFVLNKAQRL 806 (1086)
Q Consensus 744 ~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~---~ll~~-y-------~~~~~------v~~~iLkl~~e~v~nk~~rl 806 (1086)
+++..+|.|+.. .|...+.-++|++++++- ..+.. . ...|. +-..||||+..++.+.
T Consensus 695 ~~n~~v~~~~g~--~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~---- 768 (1073)
T 3gjx_A 695 KTNVRACKAVGH--PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS---- 768 (1073)
T ss_dssp HHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 999999999975 356666666665443321 11100 0 01111 2236677777777632
Q ss_pred eccCCChhh---HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHH
Q 001397 807 TFDSSSPNG---ILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDAL 883 (1086)
Q Consensus 807 ~f~~~s~~~---~~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l 883 (1086)
..+.. .++-..+..++..|.++ .|..+ +.+.+. +++++.+.+.+.. .+.++.++
T Consensus 769 ----~~~~~v~~~~i~pl~~~vl~dY~~~---~p~~r--~~evL~----l~s~iv~k~~~~~----------~~~~~~il 825 (1073)
T 3gjx_A 769 ----NDPQMVAENFVPPLLDAVLIDYQRN---VPAAR--EPEVLS----TMAIIVNKLGGHI----------TAEIPQIF 825 (1073)
T ss_dssp ----SCHHHHHHHTSHHHHHHTHHHHHHS---CGGGC--CTHHHH----HHHHHHHHHGGGT----------GGGHHHHH
T ss_pred ----CCHHHHHHHhHHHHHHHHHHHHhcC---Ccccc--cHHHHH----HHHHHHHHHHhhc----------chhHHHHH
Confidence 11211 23445556677777652 33333 555665 4444444444332 15589999
Q ss_pred HHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHH
Q 001397 884 DIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAF 963 (1086)
Q Consensus 884 ~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~ 963 (1086)
+.+|++++.|..+|+.+||+++..||+|++.+++.||..+.++|++.|+.+++|+.||++|..++|+..++.++..+...
T Consensus 826 ~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 826 DAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcchhhhHH----HHh-------c-------
Q 001397 964 YFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLS----LIL-------I------- 1025 (1086)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~s~~L~~----LI~-------~------- 1025 (1086)
+.+. .+.++.+ ..+++..++..+|.+++..+|+..++....++. ++- +
T Consensus 906 ~~~~--------~~~~~~F------~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~ 971 (1073)
T 3gjx_A 906 VAQE--------EAAAQSF------YQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVN 971 (1073)
T ss_dssp HTTC--------HHHHHHH------HHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTC
T ss_pred hhcC--------hHHHHHH------HHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccccccccCCCc
Confidence 6321 1233333 245688899999999999999887754433332 221 0
Q ss_pred CHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001397 1026 SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1084 (1086)
Q Consensus 1026 ~~~~f~~l~~~li-~~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1084 (1086)
++.+..++..+++ ++.|.-.++++..--..|.+ ..++..+|+..+..|+..+|
T Consensus 972 n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~------~~~d~~~f~~~lrDFli~~k 1025 (1073)
T 3gjx_A 972 NQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFS------LNQDIPAFKEHLRDFLVQIK 1025 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHH
Confidence 4556777776666 44554445555555555543 12457899999999998887
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=6.1e-50 Score=512.20 Aligned_cols=895 Identities=14% Similarity=0.201 Sum_probs=620.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
+++.||++++.+|+|++ ++|++|+++|.+|+++|++|..|..||+.+++++++|+|+++|++.|++ +.+|+++|..|
T Consensus 14 dv~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp CHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 58999999999999876 4999999999999999999999999999999999999999999999988 78999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhh
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRF 155 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~v~~~l~~~~a~i~K~~w~~~~~~ 155 (1086)
| +++++++.+.+.+. ++++++|++.+++.|+|++||+.|+
T Consensus 93 r----------------------------------~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp- 137 (1023)
T 4hat_C 93 R----------------------------------NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP- 137 (1023)
T ss_dssp H----------------------------------HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-
T ss_pred H----------------------------------HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-
Confidence 9 99999988643222 5899999999999999999999998
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccC-CCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQ-PNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRL 234 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~-~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l 234 (1086)
++++++.+.+ +.+..++..++.+|..+.+|... +...++..+.++.+..++.. ++.|++++.++|++... ..+
T Consensus 138 -~~l~dL~~~l-~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~~~---~~l 211 (1023)
T 4hat_C 138 -EFIPELIGSS-SSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQGAS---SSL 211 (1023)
T ss_dssp -THHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCSS---CHH
T ss_pred -HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCC---HHH
Confidence 8999999988 45666788888888888888543 12234566677777788876 99999999999976322 357
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCC
Q 001397 235 QELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLF 314 (1086)
Q Consensus 235 ~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f 314 (1086)
...+|+++..+++|.+.+. +.++++++.+|+.+. .++.++..|++||.++++.+.+
T Consensus 212 ~~~~L~~l~s~l~WI~i~~---------------------i~~~~ll~~l~~~~L-~~~~~r~~A~ecL~eIv~~~~~-- 267 (1023)
T 4hat_C 212 IVATLESLLRYLHWIPYRY---------------------IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIP-- 267 (1023)
T ss_dssp HHHHHHHHHHHTTTSCTHH---------------------HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHTSCCC--
T ss_pred HHHHHHHHHHHHHhCCHHH---------------------hcchhHHHHHHHHHc-CCHHHHHHHHHHHHHHHccccC--
Confidence 8899999999999987754 456679999994333 5778999999999999986521
Q ss_pred CChHHHHHHHHHHHHHHHH-----HHhccc--------c-CCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHH
Q 001397 315 TNDAARSKFLAHLMTGTKE-----ILQTGQ--------G-LADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVA 380 (1086)
Q Consensus 315 ~~~~~~~~~l~~~~~~i~~-----il~~~~--------~-l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~ 380 (1086)
.+.++..+.+..++.++.. +++... + -.|++....+|+++..+..+|. ..+.+.+.+.+.+..+.
T Consensus 268 ~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~-~li~~~~~~~~~l~~~l 346 (1023)
T 4hat_C 268 QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR-ALLESDESLRELLLNAH 346 (1023)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG-GGGTSCGGGHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HHHhCCcchhHHHHHHH
Confidence 1111222344444444322 222111 1 1234555668999888888874 34444445455554333
Q ss_pred HHHHHhhhhccc-ccCcHHHHHHHHHHhhcccCCcCCCCcchhhhhHHHHHHHHHhhhhccccccc--CCCCCCC-----
Q 001397 381 EFTLKSLQSWQW-ASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGF--PDDLSDN----- 452 (1086)
Q Consensus 381 ~fT~~~l~~~~~-~~~s~~~LL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi~srl~~~~~~~--~ee~~e~----- 452 (1086)
+.... .... +.+.+.+++++|..+..++ |.+.........+..++... +..||+.|+++. ++|++|.
T Consensus 347 ~~Ll~---~~~~~d~ei~~~tl~FW~~L~~~l-~~e~~~~~~~~~~~~~L~~v-li~km~~P~e~~ive~d~~~~~~e~~ 421 (1023)
T 4hat_C 347 QYLIQ---LSKIEERELFKTTLDYWHNLVADL-FYEPLKKHIYEEICSQLRLV-IIENMVRPEEVLVVENDEGEIVREFV 421 (1023)
T ss_dssp HHHHH---HTTSSCHHHHHHHHHHHHHHHHHH-TTSTTTGGGGHHHHHHHHHH-HHHSCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHH---hhCCCcHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHH-HHHhcCCCcccccCCCCCccHHHHhc
Confidence 33333 2322 3457789999999999875 43211123334444455566 677899997652 2333332
Q ss_pred -CCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHH-HHHHhccccc
Q 001397 453 -PLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHI-IAAIVKIKQC 530 (1086)
Q Consensus 453 -~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i-~g~~l~~~~~ 530 (1086)
+.|+.+.++..++++.+++++...++.+++.+.+.+.+ ..++++|..++ ..+|+++- +|++.
T Consensus 422 ~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l-------~~~~~~W~~~E----A~~~a~gaIa~~~~----- 485 (1023)
T 4hat_C 422 KESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQI-------DGSEWSWHNIN----TLSWAIGSISGTMS----- 485 (1023)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------SSTTCCHHHHH----HHHHHHHHTTTSSC-----
T ss_pred cchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh-------cCCCCCHHHHH----HHHHHHHHHHcCCC-----
Confidence 23556778888899999999999999999888887532 22234565443 67787753 33331
Q ss_pred cCCCccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCC
Q 001397 531 TGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGL 610 (1086)
Q Consensus 531 ~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~ 610 (1086)
+ +..++.+...+-.++++....-. .-..+++..+++|-+.|+..... .+
T Consensus 486 -----~--~~e~~~l~~vi~~Ll~l~~~~~~-----~d~k~~v~~t~~~~lGry~~wl~-~~------------------ 534 (1023)
T 4hat_C 486 -----E--DTEKRFVVTVIKDLLDLCVKKRG-----KDNKAVVASDIMYVVGQYPRFLK-AH------------------ 534 (1023)
T ss_dssp -----H--HHHHHHHHHHHHHHHHHHHHCCS-----HHHHHHHHHHHHHHHHTCHHHHH-HC------------------
T ss_pred -----c--hhHHHHHHHHHHHHHHhhhcccc-----CcchHHHHHHHHHHHHHHHHHHh-cc------------------
Confidence 1 11223444444455554432110 01235567788899998875442 10
Q ss_pred CchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhh-hhhc------chhHHHHHHhcccCCCCcccccc
Q 001397 611 HDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGK-LLLK------LDTIKFIVANHTREHFPFLEEYR 683 (1086)
Q Consensus 611 ~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~-~l~~------~~~~~~Ll~~~~~~~~~~l~~~~ 683 (1086)
...+..++++++.-+. ...+.+...|..-|..++. .|+ .+.. .|.+..+++...... +-+ +
T Consensus 535 ---~~~L~~vl~~L~~~l~--~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l--~- 602 (1023)
T 4hat_C 535 ---WNFLRTVILKLFEFMH--ETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADL--Q- 602 (1023)
T ss_dssp ---HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTS--C-
T ss_pred ---HHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHH-HhC--C-
Confidence 1123444444444431 1246788888988989988 465 3443 567888877653311 112 2
Q ss_pred cchhhHHHHHHHHHHHhcCC----ChHHHHHhhHHHHHHHHHhc----cCCCcccccHHHHHHHHHHHHHhhhHhhhhcc
Q 001397 684 CSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPLLQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATNS 755 (1086)
Q Consensus 684 ~~~~r~~~~~al~~l~~~~~----~~~~~~~~l~pl~~~~~~l~----~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~ 755 (1086)
.+.+..+|+++|.++...+ ..++++.+|.|+..+|+++. ++| ..+.+++..+.+..+++++..+|.+...
T Consensus 603 -~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~~l~~il~~~~~v~~~lg~ 680 (1023)
T 4hat_C 603 -PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMGA 680 (1023)
T ss_dssp -HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCT-TGGGCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred -HHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCc-hhhcCHHHHHHHHHHHHHHHHHHHHhcH
Confidence 4677899999999987543 45689999999999999996 345 5677888889999999999999999875
Q ss_pred chhHHHHHHHHhhhhhHHHHHhhhhhcCCchhH------------------------HHHHHHHHHHhhcccceeeccCC
Q 001397 756 RRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVT------------------------TPLLKFMAEFVLNKAQRLTFDSS 811 (1086)
Q Consensus 756 ~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~------------------------~~iLkl~~e~v~nk~~rl~f~~~ 811 (1086)
.|...++-++|. ++++|..++..+ ..||||+..++.+. .
T Consensus 681 --~f~~~~~~i~~~-------~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~--------~ 743 (1023)
T 4hat_C 681 --DFYPQLGHIYYN-------MLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA--------R 743 (1023)
T ss_dssp --GGHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC--------S
T ss_pred --HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcC--------C
Confidence 244444444444 334443333322 24566666666632 1
Q ss_pred Chhh---HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHHHH
Q 001397 812 SPNG---ILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALK 888 (1086)
Q Consensus 812 s~~~---~~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~ 888 (1086)
.++. .++-..+..++..|.++ .|..+ +.+.+. +++++.+.+.+.+ .+.++.+++.+++
T Consensus 744 ~~~~~~~~~~~~l~~~vl~dY~~~---~~~~r--~~~vL~----l~s~iv~~~~~~~----------~~~~~~il~~vf~ 804 (1023)
T 4hat_C 744 NLDDVVKVLVEPLLNAVLEDYMNN---VPDAR--DAEVLN----CMTTVVEKVGHMI----------PQGVILILQSVFE 804 (1023)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHS---CGGGC--CHHHHH----HHHHHHHHHGGGC----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHhC---Chhhc--cHHHHH----HHHHHHHHHHHhh----------hhhhHHHHHHHHH
Confidence 1211 13444455566666553 22223 344444 5555555554332 2558899999999
Q ss_pred HhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhh
Q 001397 889 MTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNI 968 (1086)
Q Consensus 889 l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~ 968 (1086)
+++.|..+|+.+||+++..||+|++.+++.+|..+.++|++.|+.+++|+.||++|.+++|+..++.++..+...+.+..
T Consensus 805 ~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~ 884 (1023)
T 4hat_C 805 CTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG 884 (1023)
T ss_dssp HHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988886421
Q ss_pred ccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcchhhhHHH-Hh---------------------cC
Q 001397 969 TMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSL-IL---------------------IS 1026 (1086)
Q Consensus 969 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~s~~L~~L-I~---------------------~~ 1026 (1086)
+ .+.++.+. .+++..++..+|.+++..+|+..++....++.- +. .+
T Consensus 885 --~----~~~~~~f~------~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n 952 (1023)
T 4hat_C 885 --N----VPFANEFH------KNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSN 952 (1023)
T ss_dssp --S----SHHHHHHH------HHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCH
T ss_pred --C----hHHHHHHH------HHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCch
Confidence 1 23444442 446888999999999999999887544333322 21 23
Q ss_pred HHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001397 1027 EQVFSDLKAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1084 (1086)
Q Consensus 1027 ~~~f~~l~~~li~-~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1084 (1086)
+++..++..+++. +.|.-.++++..--..|.+. .++..+|+..+..|+..+|
T Consensus 953 ~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~------~~~~~~f~~~lrdfli~~k 1005 (1023)
T 4hat_C 953 QVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQ------CKDLVVFKGTLRDFLVQIK 1005 (1023)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc------cCCHHHHHHHHHHHhHHhH
Confidence 4567776666555 45655556666665566431 2357899999999998887
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=4.1e-40 Score=428.80 Aligned_cols=877 Identities=12% Similarity=0.100 Sum_probs=583.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
++++++++++.+|.+++++.|++||++|.+|+++|++|..|..||+++.+++++|+|+.+|++.|++ +.+|+++|..|
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH
Confidence 6899999999989888999999999999999999999999999999999999999999999999988 67999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHH
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVK 160 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~ 160 (1086)
| +++++++.+. ++.+++|+++++.+++.|+|++|++.|+ ++++
T Consensus 102 r----------------------------------~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~ 144 (963)
T 2x19_B 102 K----------------------------------AQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWP--CAVA 144 (963)
T ss_dssp H----------------------------------HHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTST--THHH
T ss_pred H----------------------------------HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccccc--hHHH
Confidence 9 9999999875 3447999999999999999999999988 8999
Q ss_pred HHHHHHhh-----ccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 001397 161 ESTNFLSQ-----ATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQ 235 (1086)
Q Consensus 161 ~v~~~~~~-----~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~ 235 (1086)
++.+.+.+ .++.++..++.+|..+.+|....+. +..++.+.+..++. .++.|+.+..+++.+... +..+.
T Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~--~~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~~~--~~~~~ 219 (963)
T 2x19_B 145 DMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRL--PQYRKGLVRTSLAV-ECGAVFPLLEQLLQQPSS--PSCVR 219 (963)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-----------CCSGG-GHHHHHHHHHHHHSCTTC--CHHHH
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccC--cHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCC--chHHH
Confidence 99988743 1455789999999999998765443 22222333435554 488888888888765322 12355
Q ss_pred HHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCC
Q 001397 236 ELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFT 315 (1086)
Q Consensus 236 ~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~ 315 (1086)
..+++++ .+|...+... ..++.+++.+|+.. ..++++..+++|+.++.+.+.+
T Consensus 220 ~~~l~~l---~~wi~~~~~~-------------------~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~--- 272 (963)
T 2x19_B 220 QKVLKCF---SSWVQLEVPL-------------------QDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPDA--- 272 (963)
T ss_dssp HHHHHHH---HHHHTSSCCG-------------------GGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTG---
T ss_pred HHHHHHH---HHHHcCCCCc-------------------ccchHHHHHHHHHh--CCchHHHHHHHHHHHHHccccc---
Confidence 5555544 2587644321 12356888888765 4788999999999999985421
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc---cccCCCchhHHHHHHHHhhhhhhcchhhhhc----ccChHHHHHHHHHHHHHhhh
Q 001397 316 NDAARSKFLAHLMTGTKEILQT---GQGLADHDNYHEYCRLLGRFRVNYQLSELVN----VEGYSDWIQLVAEFTLKSLQ 388 (1086)
Q Consensus 316 ~~~~~~~~l~~~~~~i~~il~~---~~~l~~~~~~~~~c~ll~rl~~~~~l~~L~~----~~~~~~fi~~l~~fT~~~l~ 388 (1086)
..+..++..++.++...++. ...-.|.+.+..+|+++.++.+.++ ..+.. .+.+..+++.+-.+ .+
T Consensus 273 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~ll~~----~~ 345 (963)
T 2x19_B 273 --QRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHS-RALLDQVEHWQSFLALVNMIMFC----TG 345 (963)
T ss_dssp --GGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHH----HT
T ss_pred --ccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH-HHHHcCccchHHHHHHHHHHHHH----Hc
Confidence 12334555555544432210 1111355778889999999998874 33331 23344445544333 33
Q ss_pred hc---ccccCcHHHHHHHHHHhhcccCCcCCC-Cc---chhhhhHHHHHHHHHhhhhcccccccCCCCCCCCCCcHHHH-
Q 001397 389 SW---QWASSSVYYLLGLWSRLVTSVPYLKGD-AP---SLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELL- 460 (1086)
Q Consensus 389 ~~---~~~~~s~~~LL~~W~~lv~~~~~~~~~-~~---~~l~~~~~~I~~~yi~srl~~~~~~~~ee~~e~~~~d~~~~- 460 (1086)
.+ ..+++....++++|..++......... .+ ..+..+..++... +..+|..|+...-++ .+.||.+.+
T Consensus 346 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-ll~~~~~p~~~~~~~---~~~de~~~~~ 421 (963)
T 2x19_B 346 IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV-LLHKAQFPSDEEYGF---WSSDEKEQFR 421 (963)
T ss_dssp CSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCHHHHHT---SCHHHHHHHH
T ss_pred CCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHcCCCcccccC---CChhHHHHHH
Confidence 21 233445677899999998743211100 01 2334445555555 334565543210001 111222222
Q ss_pred ---HHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHhccccccCCCccc
Q 001397 461 ---QDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLES 537 (1086)
Q Consensus 461 ---~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~ 537 (1086)
....+.+..+++..+.++.+.+.+.+.+.+++| ..+.++...+ -. ++.+|++..|-.. +.
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~-----~~~~~w~~~e----aa---l~al~~i~~~~~~-----~~ 484 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS-----EEPYSWQHTE----AL---LYGFQSIAETIDV-----NY 484 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC-----CCSCCHHHHH----HH---HHHHHHHTTSCCS-----SC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc-----CCCCchHHHH----HH---HHHHHHHHhhcCc-----hh
Confidence 244566777788888888888888887765433 1122333222 33 4444444332111 11
Q ss_pred hhhhchHHHHHHHHHH-hhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCCCchHHH
Q 001397 538 QEVLDAELSARVLQLI-NVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLL 616 (1086)
Q Consensus 538 ~~~~d~~L~~~v~~l~-~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~d~~~v 616 (1086)
+..+. .++..+ ++.+ ..|++..+.+|++.+|.+.. .++ ...
T Consensus 485 ----~~~l~-~l~~~l~~l~~-----------~~~~vr~~~~~~l~~~~~~l-~~~---------------------~~~ 526 (963)
T 2x19_B 485 ----SDVVP-GLIGLIPRISI-----------SNVQLADTVMFTIGALSEWL-ADH---------------------PVM 526 (963)
T ss_dssp ----CSHHH-HHHHHGGGSCC-----------CSHHHHHHHHHHHHHTHHHH-HHC---------------------HHH
T ss_pred ----hHHHH-HHHHHHHhCCC-----------CcHHHHHHHHHHHHHHHHHH-HhC---------------------HHH
Confidence 12222 233322 2221 12669999999999998543 211 122
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHhcccCCCCccccc-ccchhhHHHHHHH
Q 001397 617 LNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEY-RCSRSRTTFYYTI 695 (1086)
Q Consensus 617 l~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~l~~~-~~~~~r~~~~~al 695 (1086)
+..++++++..+.. ++|...|...|..++.. |+..+ .|.+..+++.... .++.+ ...+.|..+|+++
T Consensus 527 l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~---~~~~l-~p~~~~il~~l~~----~l~~~~~~~~~~~~~~eai 594 (963)
T 2x19_B 527 INSVLPLVLHALGN----PELSVSSVSTLKKICRE---CKYDL-PPYAANIVAVSQD----VLMKQIHKTSQCMWLMQAL 594 (963)
T ss_dssp HTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH---TGGGC-TTTHHHHHHHHHH----HHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH---HHHHH-HhhHHHHHHHHHH----HhccCCCChHHHHHHHHHH
Confidence 44455666666642 68889999999999863 43222 2666666654321 11100 0136778999999
Q ss_pred HHHHhcC---CChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHhhhHhhhhccc----------------
Q 001397 696 GWLIFME---ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSR---------------- 756 (1086)
Q Consensus 696 ~~l~~~~---~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~~---------------- 756 (1086)
|.++... ....|+..+|.|+...|.++..++ .+++.+..+...++++.+++++....
T Consensus 595 ~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~----~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 670 (963)
T 2x19_B 595 GFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI----PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPV 670 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC----SCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------------
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCC
Confidence 9998542 235689999999999999987543 26777888889999999999998642
Q ss_pred ----hhHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeeccCCChhhHHHHHHHHHHHHHHHHh
Q 001397 757 ----RTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSR 832 (1086)
Q Consensus 757 ----~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~~Lf~~~~~ll~~y~~~ 832 (1086)
.++.. ++...++.+..+++.|.+++.+...+.+++...+..-+. .. +-++-..+..++..|...
T Consensus 671 ~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~-------~~-~~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 671 PQGPNPVVV----VLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD-------DF-APMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp --CCCHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS-------TT-GGGHHHHHHHHHHHHHHS
T ss_pred CCCCCchHH----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc-------cc-cccHHHHHHHHHHHHHcC
Confidence 12222 334445677788888888999999999999998863211 11 223555555666666531
Q ss_pred hccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHH
Q 001397 833 VLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFL 912 (1086)
Q Consensus 833 ~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll 912 (1086)
+ . ..++.+++.++. .||..+.++ +.+.+++..+++.++.+..+++.+||++++.||.++
T Consensus 739 ----~-----~-------~~~l~l~~~li~----~f~~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll 797 (963)
T 2x19_B 739 ----P-----Q-------ASALDLTRQLVH----IFAHEPAHF-PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLL 797 (963)
T ss_dssp ----C-----C-------HHHHHHHHHHHH----HHTTCTTTC-HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHH
T ss_pred ----C-----c-------cHHHHHHHHHHH----HhCCCcchH-HHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHH
Confidence 0 1 114444555544 233322222 346777888888888887788888999999999999
Q ss_pred HHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhcCCCc
Q 001397 913 EVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTL 992 (1086)
Q Consensus 913 ~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 992 (1086)
..+++.+|..+.. ++..|..++.++.+|+++.++++++.|++++..++++.. + .+. +.+++ ...
T Consensus 798 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~-----~----~~~---~~~~~---~~~ 861 (963)
T 2x19_B 798 AQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG-----E----VES---VGKVV---QED 861 (963)
T ss_dssp HHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT-----S----SCH---HHHHT---TTS
T ss_pred HHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-----C----hHH---HHHHH---HHH
Confidence 9999999998865 333499999999999999999999999999999987532 1 121 22333 356
Q ss_pred HHHHHHHHHHHHhccCCCchh-cchhhhHHHHhcCHHHHHHHHHHHHhcCC-h--hhHHHHHHHH-HHHHhhhhcccChh
Q 001397 993 FPEILKTLFEIVLFEDCGNQW-SLSRPMLSLILISEQVFSDLKAQILTSQP-V--DQHQRLSVCF-DKLMADVARSLDSK 1067 (1086)
Q Consensus 993 ~~~~l~~ll~~ll~~~~~~~~-~~s~~L~~LI~~~~~~f~~l~~~li~~q~-~--~~~~~l~~aF-~~L~~~i~~~l~~~ 1067 (1086)
+..+++.++..+.++.++..| .++..|+.++..+|+.+.++..++++.+. | ...+.-.+.| .+|+. .+.
T Consensus 862 ~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~------~~~ 935 (963)
T 2x19_B 862 GRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILR------ERV 935 (963)
T ss_dssp HHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTC------SSC
T ss_pred HHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHH------HHc
Confidence 889999999999999999888 77899999999999999999999885222 2 2222223333 23321 234
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 001397 1068 NRDKFTQNLTVFRHEFRV 1085 (1086)
Q Consensus 1068 nr~~F~~nl~~F~~~vr~ 1085 (1086)
++.+|++.+..|...+|+
T Consensus 936 ~~~~f~~~l~~F~~~~r~ 953 (963)
T 2x19_B 936 NKRRVKEMVKEFTLLCRG 953 (963)
T ss_dssp CHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHcC
Confidence 688999999999999986
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.8e-35 Score=386.96 Aligned_cols=902 Identities=15% Similarity=0.210 Sum_probs=570.8
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
++++++++++.+|+|. +++|++||++|.+|+++|++|..|..||+++++++++|+|+.+|++.|++ +.+|+++|..|
T Consensus 14 ~~~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i 92 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1049)
T ss_dssp CHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred cHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH
Confidence 6899999999999876 46899999999999999999999999999999999999999999999988 67999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhh
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRF 155 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-----~~~v~~~l~~~~a~i~K~~w~~~~~~ 155 (1086)
| +++++++.+...+. +++|+++++.+++.|.|++|++.|+
T Consensus 93 r----------------------------------~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp- 137 (1049)
T 3m1i_C 93 R----------------------------------NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP- 137 (1049)
T ss_dssp H----------------------------------HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-
T ss_pred H----------------------------------HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-
Confidence 9 99999998753333 3799999999999999999999998
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHh---ccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHH
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSE---MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVAS 232 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e---~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~ 232 (1086)
++++++.+.++ .+..++..++.+|..+.+| ++....+.....|.| ..|++ .+..||+++.+.|++..+ .
T Consensus 138 -~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk--~~l~~-~~~~i~~~~~~~l~~~~~---~ 209 (1049)
T 3m1i_C 138 -EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK--NSMSK-EFEQIFKLCFQVLEQGSS---S 209 (1049)
T ss_dssp -THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHCCC---H
T ss_pred -HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH--HHHHH-HHHHHHHHHHHHHHhcCC---H
Confidence 89999998884 4444455555555555544 444444444444433 46776 499999999999986432 3
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhccccc
Q 001397 233 RLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRS 312 (1086)
Q Consensus 233 ~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s 312 (1086)
.+...+|+++..+++|...+. +.++.+++.+|+.+. .+++++..+++||.++++.+
T Consensus 210 ~~~~~aL~~l~~~l~wi~~~~---------------------~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~-- 265 (1049)
T 3m1i_C 210 SLIVATLESLLRYLHWIPYRY---------------------IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLK-- 265 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSCTHH---------------------HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhhCCHHH---------------------HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCC--
Confidence 577889999999999986543 344669999997665 47889999999999999875
Q ss_pred CCCChH-HHHHHH----HHHHHHHHH-HHhccc---------cCCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHH
Q 001397 313 LFTNDA-ARSKFL----AHLMTGTKE-ILQTGQ---------GLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQ 377 (1086)
Q Consensus 313 ~f~~~~-~~~~~l----~~~~~~i~~-il~~~~---------~l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~ 377 (1086)
.++.. .....+ ..++..+.. +++... +-.+++.+..+|+++..+...+ ...+...+.+.+++.
T Consensus 266 -~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~ 343 (1049)
T 3m1i_C 266 -IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN-RALLESDESLRELLL 343 (1049)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH-HHHHHSCGGGHHHHH
T ss_pred -CCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHH-HHHHcCChhhHHHHH
Confidence 12211 111122 333333322 221110 1113344557899888887776 333433233455566
Q ss_pred HHHHHHHHhhhhcccccCcHHHHHHHHHHhhcccCCcCCCCcchhhhhHHHHHHHHHhhhhccccccc--CCCCCCC---
Q 001397 378 LVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGF--PDDLSDN--- 452 (1086)
Q Consensus 378 ~l~~fT~~~l~~~~~~~~s~~~LL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi~srl~~~~~~~--~ee~~e~--- 452 (1086)
.+-.++..+.... +++.....+++|..++..+ +...........+..++... +..+|..|++.. ++|++|.
T Consensus 344 ~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l-~~~~~~~~~~~~~l~~Lv~~-ll~~m~~~ed~~~~~dd~~e~~r~ 419 (1049)
T 3m1i_C 344 NAHQYLIQLSKIE--ERELFKTTLDYWHNLVADL-FYEPLKKHIYEEICSQLRLV-IIENMVRPEEVLVVENDEGEIVRE 419 (1049)
T ss_dssp HHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHH-HHSTTCGGGGHHHHHHHHHH-HHHTCCCCTTCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHH-HHHhcCCCcceeeeeCCCCcchHh
Confidence 6666655543322 2344667899999998742 10111224455566677766 666787764321 1121111
Q ss_pred CCCcHH---HHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 001397 453 PLDNVE---LLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQ 529 (1086)
Q Consensus 453 ~~~d~~---~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~ 529 (1086)
..+|.+ .++...+.+-.+++..+.++.+.+.+.+.+.++ ++..+|...+ -..|+++ ++-++ .
T Consensus 420 ~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~-------~~~~~W~~~e----aal~alg---sia~~-~ 484 (1049)
T 3m1i_C 420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID-------GSEWSWHNIN----TLSWAIG---SISGT-M 484 (1049)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT-------SSSCCHHHHH----HHHHHHH---HTTTS-S
T ss_pred hhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC-------CCCCCHHHHH----HHHHHHH---HHhcc-c
Confidence 122332 233455667777788888888888777765322 2233554332 4555554 33211 0
Q ss_pred ccCCCccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhC
Q 001397 530 CTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLG 609 (1086)
Q Consensus 530 ~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G 609 (1086)
.+..+. ..+...+-.+.++...... ....|++..+++|.+.+|..... .+
T Consensus 485 -----~~~~e~--~~l~~v~~~l~~l~~~~~~-----~~~~~~v~~~~~~~lgry~~~~~-~~----------------- 534 (1049)
T 3m1i_C 485 -----SEDTEK--RFVVTVIKDLLDLTVKKRG-----KDNKAVVASDIMYVVGQYPRFLK-AH----------------- 534 (1049)
T ss_dssp -----CHHHHH--HHHHHHHHHHHHHTTSSCS-----HHHHHHHHHHHHHHHHHCHHHHH-HC-----------------
T ss_pred -----CchhhH--HHHHHHHHHHHHHHhhhcc-----ccchHHHHHHHHHHHHHHHHHHH-hH-----------------
Confidence 111111 1133333333333221110 01135555568899988874332 11
Q ss_pred CCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhh-hhhc------chhHHHHHHhcccCCCCccccc
Q 001397 610 LHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGK-LLLK------LDTIKFIVANHTREHFPFLEEY 682 (1086)
Q Consensus 610 ~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~-~l~~------~~~~~~Ll~~~~~~~~~~l~~~ 682 (1086)
...+..+++++...+. ..+++|...|...|..++.. |+ .++. .|.+..+++....- +.-+ +
T Consensus 535 ----~~~l~~vl~~ll~~l~--~~~~~V~~~A~~al~~l~~~---~~~~l~~~~~~~~~p~~~~il~~l~~~-~~~~--~ 602 (1049)
T 3m1i_C 535 ----WNFLRTVILKLFEFMH--ETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKT-TADL--Q 602 (1049)
T ss_dssp ----HHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHH-HTTS--C
T ss_pred ----HHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHH---HHHHhhcccCCCCCcHHHHHHHHHHHH-HHhC--C
Confidence 1123334444444443 23588999999999999984 44 3331 27788887765321 0111 1
Q ss_pred ccchhhHHHHHHHHHHHhcCC----ChHHHHHhhHHHHHHHHHhc----cCCCcccccHHHHHHHHHHHHHhhhHhhhhc
Q 001397 683 RCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPLLQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATN 754 (1086)
Q Consensus 683 ~~~~~r~~~~~al~~l~~~~~----~~~~~~~~l~pl~~~~~~l~----~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~ 754 (1086)
.+.+..+|++++.++...+ ...++..+|.|+.++|.++. .++ +...+++....++.+++++..++.+..
T Consensus 603 --~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~~l~~~~~~~~~l~ 679 (1049)
T 3m1i_C 603 --PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMG 679 (1049)
T ss_dssp --HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCG-GGGGSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999986532 34689999999999999885 222 233456666778899999999999886
Q ss_pred cchhHHHHHHHHhhhhhHHHHH---hhhhh---cC-----Cc------hhHHHHHHHHHHHhhcccceeeccCCChhhH-
Q 001397 755 SRRTYGLLFDWLYPAHMPLLLK---GISHW---TD-----TP------EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI- 816 (1086)
Q Consensus 755 ~~~~~~~lf~~i~p~~~~~~~~---ll~~y---~~-----~~------~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~- 816 (1086)
. .|...++.+++....++.. .++.. .+ .| .+...+++++..+..+- .....+
T Consensus 680 ~--~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~--------~~l~~~~ 749 (1049)
T 3m1i_C 680 A--DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA--------RNLDDVV 749 (1049)
T ss_dssp G--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC--------SCHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHH
Confidence 4 2444444444433222211 11000 00 11 23445556666655421 011111
Q ss_pred --HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHHHHHhhccC
Q 001397 817 --LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIP 894 (1086)
Q Consensus 817 --~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip 894 (1086)
++-..+..++..|.+. .+..+ +.+.+. ++..+...+.+.+ ++.+..++..+++.++.|.
T Consensus 750 ~~~~~~~l~~ll~~~~~~---~~~~~--~~~~l~----l~~~ii~~~~~~~----------~~~l~~i~~~l~~~~~~~i 810 (1049)
T 3m1i_C 750 KVLVEPLLNAVLEDYMNN---VPDAR--DAEVLN----CMTTVVEKVGHMI----------PQGVILILQSVFECTLDMI 810 (1049)
T ss_dssp HHTHHHHHHHHHHHHHHS---CGGGC--CTHHHH----HHHHHHHHHGGGC----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---Ccccc--cHHHHH----HHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHH
Confidence 2233444555666541 11112 123333 3333333333222 2347778888888887777
Q ss_pred hhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCC
Q 001397 895 LADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAP 974 (1086)
Q Consensus 895 ~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~ 974 (1086)
.+++.+||+++..||+|+..+.+.||..+..+|++.|..++++..||++|.++++.+.+++++..+.+...+ .++
T Consensus 811 ~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~---~~~-- 885 (1049)
T 3m1i_C 811 NKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER---MGN-- 885 (1049)
T ss_dssp SSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHH---SCS--
T ss_pred hcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHh---cCC--
Confidence 678889999999999999999999999999999999999999999999999999999999999999887642 111
Q ss_pred CChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchh-cchhhhHHHHhc---------------------CHHHHHH
Q 001397 975 TSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW-SLSRPMLSLILI---------------------SEQVFSD 1032 (1086)
Q Consensus 975 ~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~-~~s~~L~~LI~~---------------------~~~~f~~ 1032 (1086)
.+..+.+. .+++..++..++..++...++..+ ..+..|..+|-. ++.++.+
T Consensus 886 -~~~~~~f~------~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 958 (1049)
T 3m1i_C 886 -VPFANEFH------KNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQ 958 (1049)
T ss_dssp -CHHHHHHH------HHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHH
T ss_pred -hHHHHHHH------HHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHH
Confidence 12222222 345788999999999999998876 445666666521 3346767
Q ss_pred HHHHHH-hcCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhhc
Q 001397 1033 LKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRV 1085 (1086)
Q Consensus 1033 l~~~li-~~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1085 (1086)
...+++ +..|.-..++...-...|.+ .+..+.+|++.+..|+.++|.
T Consensus 959 ~l~~~l~~~~~~~~~~~~~~f~~~l~~------~~~~~~~f~~~~rdf~~~~~~ 1006 (1049)
T 3m1i_C 959 YLANMLSNAFPHLTSEQIASFLSALTK------QYKDLVVFKGTLRDFLVQIKE 1006 (1049)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHH------ccCCHHHHHHHHHHHhHhhhh
Confidence 776776 33332223333333344432 245677999999999999984
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-29 Score=328.31 Aligned_cols=883 Identities=12% Similarity=0.091 Sum_probs=525.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
++++++++++.+|+| +++.|++|+++|.+|+++|++|..|.+||+.+++++++|+|+.+|++.|++ +.+|+++|..|
T Consensus 5 d~~~l~~~l~~~~~~-d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 5 DIARLEEAVVSFYRS-NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp ------CTHHHHHTS-TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred hHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 588999999998864 567899999999999999999999999999999999999999999999988 77999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHH
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVK 160 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~ 160 (1086)
| +++++++.+.. +.+++|+++++.+++.|+|++|+ .|+ +++.
T Consensus 84 r----------------------------------~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp--~~l~ 125 (971)
T 2x1g_F 84 K----------------------------------QKILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-EWP--GAIE 125 (971)
T ss_dssp H----------------------------------HHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-C--------
T ss_pred H----------------------------------HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-ccc--HHHH
Confidence 9 99999998764 34689999999999999999999 876 8999
Q ss_pred HHHHHHhhc------cchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhh----
Q 001397 161 ESTNFLSQA------TSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDV---- 230 (1086)
Q Consensus 161 ~v~~~~~~~------~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~---- 230 (1086)
++.+.+.++ ++.++..++.+|..+.+|+.+.+ +... ....+..++. .++.++++..+.|+....+.
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~-~~~~--r~~~~~~l~~-~~~~vl~ll~~~l~~~~~~~~~~~ 201 (971)
T 2x1g_F 126 EVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH-TSVK--RVVLRAEIAK-RVQLVIHTVERYLKLQMNRVWDAE 201 (971)
T ss_dssp HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC-CSSC--HHHHHHHHHT-THHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC-cHHH--HHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCCcc
Confidence 999887543 45688999999999998864333 1111 1112223443 47888888877776543210
Q ss_pred HHHHHHHHHHHHhhccc--cccccCCCCCCCCCccccccCccccccccCcchHHHHHHH---hh------------hcCC
Q 001397 231 ASRLQELALSLCLKCLS--FDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDY---YA------------ITEA 293 (1086)
Q Consensus 231 ~~~l~~~~L~l~~~~Ls--w~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~---y~------------~~~~ 293 (1086)
...+...+++++..++. |.+.+ .++.+++.+|++ |. ...+
T Consensus 202 ~~~~~~~al~~l~~~~~~~~ip~~-----------------------~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~ 258 (971)
T 2x1g_F 202 AYSNMNRAVKCVGTWIKNIGYTIE-----------------------GCVTITAVLLEVVHKCYWPCIHAGDGCMTADEN 258 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCGG-----------------------GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHH
T ss_pred chhHHHHHHHHHHHHHhhCCcCcc-----------------------ccccHHHHHHhhhhhhccccccccccccCcCCc
Confidence 01456666666665554 54321 224588888871 11 0346
Q ss_pred ccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHhc---cccCCC---chhHHHHHHHHhhhhhhcchhhhh
Q 001397 294 PLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQT---GQGLAD---HDNYHEYCRLLGRFRVNYQLSELV 367 (1086)
Q Consensus 294 ~~~~~~l~cL~~l~sl~~s~f~~~~~~~~~l~~~~~~i~~il~~---~~~l~~---~~~~~~~c~ll~rl~~~~~l~~L~ 367 (1086)
+++..+++|+.++.+.+. .+++...+..++.++..+... ...-.| ++....+|+++.++.+++. ..+.
T Consensus 259 ~~~~~a~~~l~~i~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~-~~~~ 332 (971)
T 2x1g_F 259 ELAESCLKTMVNIIIQPD-----CHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHS-TLLL 332 (971)
T ss_dssp HHHHHHHHHHHHHHHCSG-----GGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTH-HHHH
T ss_pred HHHHHHHHHHHHHHcCcc-----ccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH-HHHH
Confidence 788999999999998642 234666777777766655432 111123 3778889999999998763 2222
Q ss_pred ----c-----ccChHHHHHHHHHHHHHhhhhc---ccccCcHHHHHHHHHHhhcccC-Cc-CCCCc---chhhhhHHHHH
Q 001397 368 ----N-----VEGYSDWIQLVAEFTLKSLQSW---QWASSSVYYLLGLWSRLVTSVP-YL-KGDAP---SLLDEFVPKIT 430 (1086)
Q Consensus 368 ----~-----~~~~~~fi~~l~~fT~~~l~~~---~~~~~s~~~LL~~W~~lv~~~~-~~-~~~~~---~~l~~~~~~I~ 430 (1086)
+ .+.+..+++.+- .+...+ ..+++.....+++|..+..... .. ....+ ..+..+...+.
T Consensus 333 ~~~~~~~~~~~~~l~~~l~~ll----~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll 408 (971)
T 2x1g_F 333 SGITSADPELSILVHRIVQEIL----HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLT 408 (971)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH----HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred HHhccCcccccHHHHHHHHHHH----HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 1 112223333322 222221 1234566789999999876321 10 00111 23344445555
Q ss_pred HHHHhhhhcccccccCCCCCCCCCCcHHHHH----HHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchh
Q 001397 431 EGFITSRFNSVQAGFPDDLSDNPLDNVELLQ----DQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSE 506 (1086)
Q Consensus 431 ~~yi~srl~~~~~~~~ee~~e~~~~d~~~~~----~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~ 506 (1086)
.. +..++..|+. +|.++++.+|++.+. ..-+.+-.+++...+++.+.+.+.+.+.++.|.. ...+|.
T Consensus 409 ~~-l~~~~~~p~~---~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~----~~~~w~- 479 (971)
T 2x1g_F 409 RI-LVRKSEQPDE---KSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQR----HPTHWT- 479 (971)
T ss_dssp HH-HHHHTSCCCT---TTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH----CTTCCH-
T ss_pred HH-HHHHhcCCCc---ccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccC----CCCcHH-
Confidence 55 3334544421 111122222222322 3334555666777778888888888877665532 112333
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCCCccchhhhchHHHHHHHHHH-hhcccccccccccccchHHHHHHHHHHHHHhh
Q 001397 507 ISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLI-NVTDSGLHSQRYCELSKQRLDRAILTFFQHFR 585 (1086)
Q Consensus 507 l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~-~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~ 585 (1086)
+..-+++..|++..|-.. +..+. +. .++.++ ++... + ..|++..+.+|.+.++.
T Consensus 480 ------~~eaal~~l~~iae~~~~-----~~~~~----l~-~l~~~l~~l~~~--d-------~~~~vr~~a~~~l~~~~ 534 (971)
T 2x1g_F 480 ------KLEACIYSFQSVAEHFGG-----EEKRQ----IP-RLMRVLAEIPYE--K-------LNVKLLGTALETMGSYC 534 (971)
T ss_dssp ------HHHHHHHHHHHTTTC-----------CH----HH-HHHHHHHHSCTT--T-------SCHHHHHHHHHHHHHTH
T ss_pred ------HHHHHHHHHHHHHhhcCh-----hhhHH----HH-HHHHHHHhcCcc--c-------cCHHHHHHHHHHHHHHH
Confidence 334455556665433111 11111 22 122222 22210 1 13779999999999998
Q ss_pred hHhhccccccchHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHH
Q 001397 586 KSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIK 665 (1086)
Q Consensus 586 ~~yl~~~~~~~~~~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~ 665 (1086)
.. +.++. +-...++..+++. +. ++|...|...|..+++. |+..+ .|.+.
T Consensus 535 ~~-l~~~~-----------------~~l~~vl~~l~~~----l~-----~~v~~~A~~al~~l~~~---~~~~l-~p~~~ 583 (971)
T 2x1g_F 535 NW-LMENP-----------------AYIPPAINLLVRG----LN-----SSMSAQATLGLKELCRD---CQLQL-KPYAD 583 (971)
T ss_dssp HH-HC---------------------CHHHHHHHHHHH----HH-----SSCHHHHHHHHHHHHHH---CHHHH-HHHHH
T ss_pred HH-HhcCH-----------------HHHHHHHHHHHHH----hC-----hHHHHHHHHHHHHHHHH---HHHhc-cccHH
Confidence 43 33211 0113334444433 31 46788888888888863 33222 25555
Q ss_pred HHHHhcccCCCCccccc-ccchhhHHHHHHHHHHHhc---CCChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHH
Q 001397 666 FIVANHTREHFPFLEEY-RCSRSRTTFYYTIGWLIFM---EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIG 741 (1086)
Q Consensus 666 ~Ll~~~~~~~~~~l~~~-~~~~~r~~~~~al~~l~~~---~~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ 741 (1086)
.+++.... .++.+ ...+.+..+|++++.++.. +....++..++.|+...|.++..++. .+++.+..++.
T Consensus 584 ~ll~~l~~----~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~---~~~~~~~~~~~ 656 (971)
T 2x1g_F 584 PLLNACHA----SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADS---KTPAARIRTIF 656 (971)
T ss_dssp HHHHHHHH----HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC------CHHHHHHHHH
T ss_pred HHHHHHHH----HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC---CChhhHHHHHH
Confidence 55554321 11111 0135677899999999764 22356899999999999999875431 14556777888
Q ss_pred HHHHhhhHhhhhccchh--------HHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeeccCCCh
Q 001397 742 LMRDLRGIAMATNSRRT--------YGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSP 813 (1086)
Q Consensus 742 ll~~l~Gi~~a~~~~~~--------~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~ 813 (1086)
.+..+.|++.+..+... ...+ .-+.+..++++..+++.|.++++++..+.+++..++..-+. .+ .|
T Consensus 657 ~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~---~p 730 (971)
T 2x1g_F 657 RLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF---QP 730 (971)
T ss_dssp HHHHHHHHHHHHTC-------------CC-HHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------CT
T ss_pred HHHHHHHHHhhcCCCcCcccccccCCCch-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc---cc
Confidence 99999999998764210 0111 22233445666777777777888999999999887763211 11 12
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHH----HHHH
Q 001397 814 NGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDI----ALKM 889 (1086)
Q Consensus 814 ~~~~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~----~l~l 889 (1086)
.+-..+-.++..|.. .+. . ..+.++..++.+ ||.-+.+. +.+.+.+.. ++++
T Consensus 731 ---~l~~~~~~l~~~~~~-----------~~~--~---~~l~l~~~~i~~----~~~~~~~~-~~l~~~~~~~~~~~~~~ 786 (971)
T 2x1g_F 731 ---MLQDLCLFIVASFQT-----------RCC--A---PTLEISKTAIVM----FFKDEGCK-PLMQQLLREFIQHSFKL 786 (971)
T ss_dssp ---HHHHHHHHHHHHCC-------------CC--H---HHHHHHHHHHTT----CCC------HHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHhc-----------CCc--h---HHHHHHHHHHHH----hCCCcchH-HHHHHHHHHHHHHHHHH
Confidence 233333333333211 011 1 245555555541 12210000 113333333 3332
Q ss_pred hhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHH-HHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhh
Q 001397 890 TLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNT-FMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNI 968 (1086)
Q Consensus 890 ~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~-f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~~~~~ 968 (1086)
+-..+.+++-+.|++++.||.|+..+...+|..+.. ++. +..++.+...++++.+++..+.++..+..+.+.-
T Consensus 787 l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~--s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~---- 860 (971)
T 2x1g_F 787 FESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED--KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQS---- 860 (971)
T ss_dssp HTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC--TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH----
T ss_pred HhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC----
Confidence 222223477789999999999999999999988865 345 7999999999999999999999999888876651
Q ss_pred ccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchh-cchhhhHHHHhcCHHHHHHHHHHHHhc--CC-hh
Q 001397 969 TMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW-SLSRPMLSLILISEQVFSDLKAQILTS--QP-VD 1044 (1086)
Q Consensus 969 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~-~~s~~L~~LI~~~~~~f~~l~~~li~~--q~-~~ 1044 (1086)
+. .+. +.+.+. .....+++.++..+...-.+..+ .++..|..++..+|+.+.+...+.+.. -| ..
T Consensus 861 --~~---~~~---~~~~~~---~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~ 929 (971)
T 2x1g_F 861 --RN---HAH---VTEVVL---ATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQL 929 (971)
T ss_dssp --TT---CHH---HHHHHH---HHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSS
T ss_pred --Cc---hHH---HHHHHH---HhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCCCc
Confidence 11 121 222221 23455666676666555555544 788999999999999999988777752 22 11
Q ss_pred hHHHHHHHH-HHHHhhhhcccChhhHHHHHHHHHHHHHHhhcC
Q 001397 1045 QHQRLSVCF-DKLMADVARSLDSKNRDKFTQNLTVFRHEFRVK 1086 (1086)
Q Consensus 1045 ~~~~l~~aF-~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~~ 1086 (1086)
..+.-.+.| .+|+. .+.++++|++.++.|....|++
T Consensus 930 ~~~~~~~~f~~~l~~------~~~~~r~~~~~~~~f~~~~r~~ 966 (971)
T 2x1g_F 930 ITDADKTRYTALIIK------EKVNKRLLQQHLSEMAMKTRGL 966 (971)
T ss_dssp SCHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHH------HHhChHhHHHHHHHHHHHHcCc
Confidence 223333334 34432 2235888999999999999864
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.3e-28 Score=315.39 Aligned_cols=903 Identities=11% Similarity=0.104 Sum_probs=525.5
Q ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCC--ChHHHHHHHHHHHHHHhhcccChh----
Q 001397 3 SLAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL--TPYALMLASSSLLKQVTEHSLALQ---- 75 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~-~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~--~~~~~f~a~~~L~~~i~~~~l~~~---- 75 (1086)
++++++++.+..|+| ++++.|++|+++|.+|+++|++|..|..||.+++ +++++|||+++|++.|+ .+|++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~--~l~~e~~~~ 81 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR--EWNNESNLL 81 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH--HCCTTTSHH
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH--hCChhhhHH
Confidence 578999999777766 4889999999999999999999999999998875 89999999999999999 59999
Q ss_pred hhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhhccCCChh
Q 001397 76 LRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRG-PELQSFVTASLIQLLCRLTKFGWFDDDR 154 (1086)
Q Consensus 76 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~v~~~l~~~~a~i~K~~w~~~~~ 154 (1086)
++..|| +++++++.+.. .+.+++|++|++.+++.|+|+.||+.|+
T Consensus 82 ~~~~lr----------------------------------~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp 127 (980)
T 3ibv_A 82 ELQMIR----------------------------------DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN 127 (980)
T ss_dssp HHHHHH----------------------------------HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHH----------------------------------HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCc
Confidence 999999 99999998732 2457999999999999999999999998
Q ss_pred hhhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHhccCCCCCCchHHHHhH---HhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 001397 155 FRDLVKESTNFLSQATS-DHYAIGLKILNQLVSEMNQPNPGLPSTHHRRV---ACSFRDQSLFQIFQISLTSLGQLKSDV 230 (1086)
Q Consensus 155 ~~~~i~~v~~~~~~~~~-~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~---~~~f~~~~L~~if~~~~~~L~~~~~~~ 230 (1086)
+++.++.+.+..++. ......|++|..+-+|+.......+.+.+.|. +-.+++++++.|++.+..+|.+.....
T Consensus 128 --~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~ 205 (980)
T 3ibv_A 128 --DFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK 205 (980)
T ss_dssp --THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC
Confidence 899999988854444 45667888888777776554444444444343 557888789999999999998864322
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhccc
Q 001397 231 ASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVR 310 (1086)
Q Consensus 231 ~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~ 310 (1086)
.+.+...+|+++..+++|...+. +.++++++.+|.... .++++..|.+||.++.+.+
T Consensus 206 ~~~l~~~~L~~l~s~i~wi~~~~---------------------i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSWININL---------------------IVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp CHHHHHHHHHHHHHHTTTSCHHH---------------------HHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhhcCHHh---------------------hhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcC
Confidence 24588899999999999987654 556779999997653 5789999999999999876
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHhcccc-CCCchhHHHHHHHHhhhhhhcchhhhhcccC---------hHHHHHHHH
Q 001397 311 RSLFTNDAARSKFLAHLMTGTKEILQTGQG-LADHDNYHEYCRLLGRFRVNYQLSELVNVEG---------YSDWIQLVA 380 (1086)
Q Consensus 311 ~s~f~~~~~~~~~l~~~~~~i~~il~~~~~-l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~---------~~~fi~~l~ 380 (1086)
. .++++...+..+ .+.+++..-.. -.|.+....+|+++.-+...+-. +...+. -..-++.+-
T Consensus 263 ~----~~~~k~~li~~l--~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~--~~~~~~~~~~~~~~~~~~~l~~ll 334 (980)
T 3ibv_A 263 M----KPLEKLNLLNIL--NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVA--IKSDPSELSPELKENCSFQLYNLF 334 (980)
T ss_dssp C----CHHHHHHHHHHH--HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHH--HHTSCC--CHHHHHHHHHHHHHTH
T ss_pred C----ChhhHHHHHHHH--hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH--HccCccccchhhhhhHHHHHHHHH
Confidence 4 246666666653 45566654221 24555555688888777655421 122110 001122222
Q ss_pred HHHHHhhhhcccccCcHHHHHHHHHHhhcccCCcCC--CCcchhhhhHHHHHHHHHhhhhcccccccCCCCCCCCCCcHH
Q 001397 381 EFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKG--DAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVE 458 (1086)
Q Consensus 381 ~fT~~~l~~~~~~~~s~~~LL~~W~~lv~~~~~~~~--~~~~~l~~~~~~I~~~yi~srl~~~~~~~~ee~~e~~~~d~~ 458 (1086)
.+...++... .++.....+.+|..++....+... ..+.....+.+++... +..||.-|+.. +.++|++.+|++
T Consensus 335 ~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~-li~k~~yp~d~--~~~~~~d~ed~~ 409 (980)
T 3ibv_A 335 PYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEA-IIKKMKYDESQ--EWDDDPDSEEEA 409 (980)
T ss_dssp HHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH-HHHTTSCCTTC--CCCCCSSSSTHH
T ss_pred HHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHH-HHHHccCCCcc--ccccccchhHHH
Confidence 2223333322 123444579999998865433221 1124445566667766 56678766421 111122335566
Q ss_pred HHHHHHhhhh----hhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHhccccccCC-
Q 001397 459 LLQDQLDCFP----YLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGC- 533 (1086)
Q Consensus 459 ~~~~~le~i~----~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~- 533 (1086)
.+.+.+..++ .++...++...+.+.+.+...+++. .. ++ .. .-|.++.-.++..|++=.|-...+.
T Consensus 410 ~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~---l~--~~--~~--~~W~~~EaaL~~l~~iaE~i~~~~~~ 480 (980)
T 3ibv_A 410 EFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTA---AT--LS--PE--NSWQLIEFALYETYIFGEGLRGPDAF 480 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---TT--SC--HH--HHHHHHHHHHHHHHHTTTTCCSGGGT
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH---hc--cc--CC--CCHHHHHHHHHHHHHHHhhccccccc
Confidence 6655444433 3345556666664554555544321 11 11 11 1123566666666665332111100
Q ss_pred CccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCCCch
Q 001397 534 SLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDH 613 (1086)
Q Consensus 534 ~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~d~ 613 (1086)
..++.+.+ +.+...+..+++ ... .....|++..+.+|.+.||.+..- .+.
T Consensus 481 ~~~~~~~l-p~l~~ll~~ll~---s~i-----~~~~hp~V~~~~~~~l~rys~~~~-~~~-------------------- 530 (980)
T 3ibv_A 481 FNEVDKSP-TVLSQILALVTT---SQV-----CRHPHPLVQLLYMEILVRYASFFD-YES-------------------- 530 (980)
T ss_dssp BCSSSCCB-CHHHHHHHHHHH---SST-----TTCCCHHHHHHHHHHHHHTGGGGG-TCC--------------------
T ss_pred cCcccchh-HHHHHHHHHHHh---CCC-----CCCCCHHHHHHHHHHHHHHHHHHh-cCc--------------------
Confidence 01111222 235555555554 111 112348899999999999986542 211
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHhcccCCCCcccc---ccc------
Q 001397 614 LLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEE---YRC------ 684 (1086)
Q Consensus 614 ~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~l~~---~~~------ 684 (1086)
..+..+++-+.....-...++.|...|..+|..+++ .|+..+ .|.+..+++.... ++.. |..
T Consensus 531 -~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~---~~~~~L-~~~~~~il~~l~~----lL~~~~~~~~~~~~~~ 601 (980)
T 3ibv_A 531 -AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK---SIKKQV-VNYTESSLAMLGD----LLNISVSPVTDMDAPV 601 (980)
T ss_dssp -TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH---HTTTTC-SSSHHHHHHHTTG----GGCCCCCCCCC--CSS
T ss_pred -hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH---HhhHHh-hhHHHHHHHHHHH----hhcCcCCCCCcccccc
Confidence 012222222223111123456788899999999988 466444 3777778876532 2211 100
Q ss_pred -----------chhhHHHHHHHHHHHhcC-----CChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHhhh
Q 001397 685 -----------SRSRTTFYYTIGWLIFME-----ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRG 748 (1086)
Q Consensus 685 -----------~~~r~~~~~al~~l~~~~-----~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~~l~G 748 (1086)
...+.-+|+++|.++... ...++++.++.|+-..+........+ -.++.+ .+..++..+..
T Consensus 602 ~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~-~~~~~~--~i~~~i~al~~ 678 (980)
T 3ibv_A 602 PTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLS-ALENII--SVYCSLMAIGN 678 (980)
T ss_dssp CCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC---CHHH--HHHHHHHHHHH
T ss_pred cchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc-CccHHH--HHHHHHHHHHH
Confidence 123557999999998542 24568999999999999888643211 112222 55566666777
Q ss_pred Hhhhhccch-hHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhcccceeeccCCChhhH-HHHHHHHHHH
Q 001397 749 IAMATNSRR-TYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI-LLFREVSKLI 826 (1086)
Q Consensus 749 i~~a~~~~~-~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~-~Lf~~~~~ll 826 (1086)
++++..... ....+.+.+.+. .+.+...++.|..++.|....-+++..++..-+ +... ++-+.+..++
T Consensus 679 lakgf~~~~~~~~p~~~~f~~~-~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg---------~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 679 FAKGFPARGSEEVAWLASFNKA-SDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG---------PDMLPKVPQLISILL 748 (980)
T ss_dssp HHHTSCSCC-CCCSHHHHHHHH-HHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH---------HHHTTTHHHHHHHHH
T ss_pred HhccCCcccCCCCcHHHHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc---------HhHHHHHHHHHHHHH
Confidence 777764321 111233444444 477778888899999999999888888887321 1111 3444444444
Q ss_pred HHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHHHHHHHHhhccCh---hhHHhhHH
Q 001397 827 VAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPL---ADILAFRK 903 (1086)
Q Consensus 827 ~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~---~dll~yPk 903 (1086)
..| ....+.+..-++..+.+...++..++ + +.-+..++..++.+ +.-|. +++..-+.
T Consensus 749 ~~~-------------~~~e~~~fL~l~~qli~~f~~~~~~~--l----~~ll~~l~~~if~~-l~~~~~~td~~r~~~~ 808 (980)
T 3ibv_A 749 NSI-------------DMNELVDVLSFISQLIHIYKDNMMEI--T----NRMLPTLLMRIFSS-LSAAPQGTDDAVKQND 808 (980)
T ss_dssp HHC-------------CTTTHHHHHHHHHHHHHHTTTTSHHH--H----HHHHHHHHHHHHHH-TTC----CCHHHHHHH
T ss_pred hcC-------------CHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHH-hcCCCCCcHHHHHHHH
Confidence 222 11223333334444444444432110 0 11122333344443 22222 44566778
Q ss_pred hHHHHHHHHHHHHhhhhhhHhcC--CHHHHHHHHHHHHH-hhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHH
Q 001397 904 LTKAYFAFLEVLFSSHITFILNL--NTNTFMHIVGSLES-GLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAI 980 (1086)
Q Consensus 904 l~~~~f~ll~~l~e~~~~~l~~l--~~~~f~~li~sl~~-gl~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~ 980 (1086)
+.++||.++..+.......+.-- +...|..++.++.. |..+.|+...+.|+..+.++++..... + + .|
T Consensus 809 l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~----~-~-~~--- 879 (980)
T 3ibv_A 809 LRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGK----D-G-IA--- 879 (980)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------------C---
T ss_pred HHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCC----C-c-ch---
Confidence 99999999999888765444322 23568888888874 466678999999999999998865321 1 0 12
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhccCCCchh--------cchhhhHHHHhcCHHHHHHHHHHHHhcCChh--hHHHHH
Q 001397 981 NLARHIVECPTLFPEILKTLFEIVLFEDCGNQW--------SLSRPMLSLILISEQVFSDLKAQILTSQPVD--QHQRLS 1050 (1086)
Q Consensus 981 ~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~--------~~s~~L~~LI~~~~~~f~~l~~~li~~q~~~--~~~~l~ 1050 (1086)
++.+++ +. +....|...+.+.++... .++..+-.+..-..+.|-++ |.+..-|. .-+.+.
T Consensus 880 gf~~f~------~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~---l~~~~lp~~~~~~~~~ 949 (980)
T 3ibv_A 880 GFENFT------LS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSY---LVTVYFPTVNFPDVMA 949 (980)
T ss_dssp CHHHHH------HH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTTTC----CCHH
T ss_pred HHHHHH------HH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHH---HHHhcCCcCCCCHHHH
Confidence 233443 55 788888888777665432 22233333322222222222 22221111 223333
Q ss_pred HHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhhcC
Q 001397 1051 VCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRVK 1086 (1086)
Q Consensus 1051 ~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~~ 1086 (1086)
+.|.+-+ .......|++-|..|.+..|++
T Consensus 950 ~~~~~~l-------~~~~~k~f~~~~~~~~~~~~~~ 978 (980)
T 3ibv_A 950 SEYLQAL-------SNLDSRSFKQFFQKFIQALKSG 978 (980)
T ss_dssp HHHHHC-----------------------CHHHHC-
T ss_pred HHHHHHH-------hccchhhHHHHHHHHHHHhhcC
Confidence 3333332 2233567999999999999874
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.94 E-value=3.1e-22 Score=263.01 Aligned_cols=594 Identities=14% Similarity=0.155 Sum_probs=364.5
Q ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHhhhccCcccHHHHHHHHh-hCCChHHHHHHHHHHHHHHhh--cccChhhhh
Q 001397 3 SLAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILD-NALTPYALMLASSSLLKQVTE--HSLALQLRL 78 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~-~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~-~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~ 78 (1086)
.+++++++++.+|+| ++++.|++|+++|.+|+++|++|..|..+|. .+.+++++|+|+.+|++.|++ +.+++++|.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 577899999999998 5778899999999999999999999999997 788999999999999999987 779999999
Q ss_pred hhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCC---CchHHHHHHHHHHHHHHHhhccCCChhh
Q 001397 79 DISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGP---ELQSFVTASLIQLLCRLTKFGWFDDDRF 155 (1086)
Q Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~v~~~l~~~~a~i~K~~w~~~~~~ 155 (1086)
.|| +++++++.+... +.+++|++++.++++.|+|++|++.|+
T Consensus 89 ~Ir----------------------------------~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp- 133 (1204)
T 3a6p_A 89 YLK----------------------------------NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP- 133 (1204)
T ss_dssp HHH----------------------------------HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT-
T ss_pred HHH----------------------------------HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch-
Confidence 999 999999886521 246999999999999999999999998
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhh-------
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKS------- 228 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~------- 228 (1086)
++++++.+++. ++..++..++.+|..+.+|+...+. ....+.++.+..+++. ++.||..+.++|++...
T Consensus 134 -~ll~~L~~~~~-~~~~~~e~~L~iL~~L~Eev~~~~~-~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 134 -DMLIELDTLSK-QGETQTELVMFILLRLAEDVVTFQT-LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp -THHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHTSCC-SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999884 4667788899999999998654332 2335555666788876 99999999999976421
Q ss_pred --------hhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccC--cchHHHHHHHhhhcCCccHHH
Q 001397 229 --------DVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLED--PSTLQIFFDYYAITEAPLSKE 298 (1086)
Q Consensus 229 --------~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~--~~~~~~lf~~y~~~~~~~~~~ 298 (1086)
+....++.++|+++..+++|...+. +.+ +.+++++|..+ .+++++..
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~---------------------i~~~~~~ll~~l~~~l--~~~~lr~~ 266 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSMSH---------------------ITAENCKLLEILCLLL--NEQELQLG 266 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH---------------------HHTTTSHHHHHHHHGG--GCTTTHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCHHH---------------------HHhccchHHHHHHHHc--CCHHHHHH
Confidence 1123588899999999999976543 122 34899998665 46889999
Q ss_pred HHHHHHHHhcccccCCCChHHHHHHHHHH----HHHHHHHHh--ccccCCCchhHHHHHHHHhhhhhhcchhhhhc----
Q 001397 299 ALECLVRLASVRRSLFTNDAARSKFLAHL----MTGTKEILQ--TGQGLADHDNYHEYCRLLGRFRVNYQLSELVN---- 368 (1086)
Q Consensus 299 ~l~cL~~l~sl~~s~f~~~~~~~~~l~~~----~~~i~~il~--~~~~l~~~~~~~~~c~ll~rl~~~~~l~~L~~---- 368 (1086)
|++||.++++.+.+ ++++..++..+ +.++..... ...++ ++...++++-++++...+.- .+..
T Consensus 267 A~ecL~~i~s~~~~----~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~--~e~d~e~~k~l~~ll~~lg~-~l~~l~~~ 339 (1204)
T 3a6p_A 267 AAECLLIAVSRKGK----LEDRKPLMVLFGDVAMHYILSAAQTADGGGL--VEKHYVFLKRLCQVLCALGN-QLCALLGA 339 (1204)
T ss_dssp HHHHHHHHHTCCSC----HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHhCCCC----hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCC--ccHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 99999999997753 34444443322 223333221 11122 23344666666666666531 2332
Q ss_pred ------ccChHHHHHHHHHHHHHhhhhcccccCcHHHHHHHHHHhhcccCCcCCCCcchhhhhHHHHHHHHH--hhhhcc
Q 001397 369 ------VEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFI--TSRFNS 440 (1086)
Q Consensus 369 ------~~~~~~fi~~l~~fT~~~l~~~~~~~~s~~~LL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi--~srl~~ 440 (1086)
.+.+..|++.+..+|.. + +.+.....+++|..++..... .....+..+.+.+.+... ..|+.-
T Consensus 340 ~~~~~~~~~l~~~l~~lL~~t~~----~--~~~vs~~~l~fW~~ll~~~~~---~~~~~~~~~l~~Ll~vl~~~l~k~~y 410 (1204)
T 3a6p_A 340 DSDVETPSNFGKYLESFLAFTTH----P--SQFLRSSTQMTWGALFRHEIL---SRDPLLLAIIPKYLRASMTNLVKMGF 410 (1204)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHTS----S--CHHHHHHHHHHHHHHHSCTTT---TTCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cccccChhHHHHHHHHHHHHHhC----c--cHHhHHHHHHHHHHHHhcccc---cccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 24677888888777632 1 112233569999998876321 112345566677776631 245655
Q ss_pred cccccC--CC---CCCCCCCc-HHHH----HHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHh-hcC---------
Q 001397 441 VQAGFP--DD---LSDNPLDN-VELL----QDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERA-RMQ--------- 500 (1086)
Q Consensus 441 ~~~~~~--ee---~~e~~~~d-~~~~----~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~-~~~--------- 500 (1086)
|+.... .+ +|++..+| .+.+ ++..+.+-.+++..+..+.+++.+.+.+.+....... .++
T Consensus 411 p~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 490 (1204)
T 3a6p_A 411 PSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEG 490 (1204)
T ss_dssp SSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------
T ss_pred ccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccc
Confidence 432110 00 00111111 1222 2456777788899999998888887766543211100 000
Q ss_pred -CCCchhhHHHHHHHHHHHHHHHHHhccccccCCCccchhhhchHHHHHHHHH-HhhcccccccccccccchHHHHHHHH
Q 001397 501 -TGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQL-INVTDSGLHSQRYCELSKQRLDRAIL 578 (1086)
Q Consensus 501 -~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l-~~l~~~~~~~~~~~~~s~~rl~~a~l 578 (1086)
..+... ..+. ..--.+..+++++.|-... .+ .+.++..+...++.. +++.. .. |.+..+.+
T Consensus 491 ~~~~~~s-~~~~-~~ea~~~~leav~~~~~~~---~e-~~~l~~~~~~~Ll~~ll~~~~----------~~-p~l~~~~i 553 (1204)
T 3a6p_A 491 SLCSVFS-PSFV-QWEAMTLFLESVITQMFRT---LN-REEIPVNDGIELLQMVLNFDT----------KD-PLILSCVL 553 (1204)
T ss_dssp CCSCSSS-HHHH-HHHHHHHHHHHHHHHHHHH---SC-TTCCCHHHHHHHHHHHHHCCC----------SC-HHHHHHHH
T ss_pred cccCcCC-HHHH-HHHHHHHHHHHHHHHHhcc---cc-cccccHHHHHHHHHHHHhCCC----------CC-hHHHHHHH
Confidence 000000 0000 0111223444444321000 00 011111122223332 21110 12 45666666
Q ss_pred HHHHHhhhHhhccccccchHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccCCC----------CchhHHHHHHHHHHHH
Q 001397 579 TFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYT----------ESQEVIDHTLSLFLEL 648 (1086)
Q Consensus 579 ~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~~~----------~~~~vi~~al~Ll~~l 648 (1086)
..+.++.. |+..+ ...+...+++++..+..++ ...++...+...|..+
T Consensus 554 ~~l~~l~~-~~~~~---------------------p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 554 TNVSALFP-FVTYR---------------------PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp HHHHHHGG-GGGTC---------------------GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhcC---------------------chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 66555442 22211 1123334444444443321 2457888888899888
Q ss_pred hcchhhhhhhhcchhHHHHHHhcccC--CCCcccccccchhhHHHHHHHHHHHhc-C---CChHHHHHhhHHHHHHHHH
Q 001397 649 ASGYMTGKLLLKLDTIKFIVANHTRE--HFPFLEEYRCSRSRTTFYYTIGWLIFM-E---ESPVKFKSSMDPLLQVFIS 721 (1086)
Q Consensus 649 ~~~~~~~~~l~~~~~~~~Ll~~~~~~--~~~~l~~~~~~~~r~~~~~al~~l~~~-~---~~~~~~~~~l~pl~~~~~~ 721 (1086)
++. |+..+ .|.+..|.+....- ....+ . .+.+..+|++++.+... . ....+++.++.|+.+.|.+
T Consensus 612 ~~~---~~~~L-~p~~~~i~~~~~~~l~~~~~l--~--~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 612 CRD---YPQLV-LPNFDMLYNHVKQLLSNELLL--T--QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHH---CHHHH-GGGHHHHHHHHHHHHHSTTTS--C--HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHH---hhHHH-HHHHHHHHHHHHHHHhCcccc--c--HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 883 43222 14444444433210 00101 1 35677899999877432 1 2345799999999988884
No 8
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.76 E-value=5.2e-17 Score=176.04 Aligned_cols=249 Identities=16% Similarity=0.264 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhhcccceeeccCCChhhH---HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCc
Q 001397 789 TPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNY 865 (1086)
Q Consensus 789 ~~iLkl~~e~v~nk~~rl~f~~~s~~~~---~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~ 865 (1086)
..+||++..++++. ..+..+ ++-..+..++..|.+ +.|..+ ++|.+..+..+++-+.+.+.
T Consensus 47 keiLkLiet~i~~~--------~d~~~v~~~~ippLl~~VL~DY~~---~vp~aR--epeVL~l~~tii~kl~~~i~--- 110 (321)
T 1w9c_A 47 RETLKLISGWVSRS--------NDPQMVAENFVPPLLDAVLIDYQR---NVPAAR--EPEVLSTMAIIVNKLGGHIT--- 110 (321)
T ss_dssp HHHHHHHHHHHTTC--------SCHHHHHHHTHHHHHHHHHHHHHT---SCGGGC--CTHHHHHHHHHHHHHGGGGG---
T ss_pred HHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHHHHHh---CCcccc--cHHHHHHHHHHHHHHHHHhh---
Confidence 47888888888742 122222 455555667788865 344445 67777755555555555443
Q ss_pred cccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCC
Q 001397 866 VNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL 945 (1086)
Q Consensus 866 vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~ 945 (1086)
+.++.+++.+|++++.|..+|+.+||++|.+||+||+.+++.|+..+.++|++.|+.+++|+.||+||.
T Consensus 111 -----------~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~ 179 (321)
T 1w9c_A 111 -----------AEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT 179 (321)
T ss_dssp -----------GGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS
T ss_pred -----------hhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcchhhhHHHHh-
Q 001397 946 DTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLIL- 1024 (1086)
Q Consensus 946 ~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~s~~L~~LI~- 1024 (1086)
+++|+..|++++..+...+-+ + .+.++.+ ..+++..++..+|.++++.+|+..+..-..++.-+.
T Consensus 180 ~r~V~e~gL~il~~ll~n~~~----~----~~~~~~F------y~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 180 MRNVADTGLQILFTLLQNVAQ----E----EAAAQSF------YQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH----C----HHHHHHH------HHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhc----C----hHHHHHH------HHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 999999999999999988853 1 1233333 345688899999999999999988744333333221
Q ss_pred -----------c------CHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001397 1025 -----------I------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1084 (1086)
Q Consensus 1025 -----------~------~~~~f~~l~~~li-~~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1084 (1086)
. +..+-.++..+++ ++-|.-.++++..--..|.+ + ..+..+|+..+..|+..+|
T Consensus 246 ~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf~-----~-~~d~~~Fk~~lrDFLIqiK 317 (321)
T 1w9c_A 246 LVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS-----L-NQDIPAFKEHLRDFLVQIK 317 (321)
T ss_dssp HHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH-----T-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-----c-cCCHHHHHHHHHHHHHHHH
Confidence 1 2234445554444 33443334444444444432 1 2357799999999999887
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=1e-10 Score=149.66 Aligned_cols=778 Identities=12% Similarity=0.133 Sum_probs=404.4
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHh--hCCChHHHHHHHHHHHHHHhh--cccChhhh
Q 001397 2 ESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILD--NALTPYALMLASSSLLKQVTE--HSLALQLR 77 (1086)
Q Consensus 2 ~~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~--~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~ 77 (1086)
+.++++.++.+..++| |++.|++||+.|.++.++|+++..+..|+. .+.++.++++|+..|++.|.+ ..+++++|
T Consensus 10 ~~~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~ 88 (852)
T 4fdd_A 10 QGLQQILQLLKESQSP-DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 88 (852)
T ss_dssp HHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHH
T ss_pred hhHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 3567777777777754 789999999999999999999999999998 578999999999999999977 56899999
Q ss_pred hhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhh
Q 001397 78 LDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRD 157 (1086)
Q Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~ 157 (1086)
..|| +.+++.+. +.++.|++++..+++.|.+.+|++.|+ +
T Consensus 89 ~~ik----------------------------------~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~~wp--~ 128 (852)
T 4fdd_A 89 DFIK----------------------------------SECLNNIG----DSSPLIRATVGILITTIASKGELQNWP--D 128 (852)
T ss_dssp HHHH----------------------------------HHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTTTCT--T
T ss_pred HHHH----------------------------------HHHHHHHc----CCCHHHHHHHHHHHHHHHHhcCccccH--H
Confidence 9999 88887653 235689999999999999999988887 7
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001397 158 LVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQEL 237 (1086)
Q Consensus 158 ~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~ 237 (1086)
+++.+.+.+..++......++..|..+..++... +....+...+. .
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---------------~~~~~~~~~~~-------------------~ 174 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---------------LDSDVLDRPLN-------------------I 174 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---------------HHHCSSSSCHH-------------------H
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---------------hchhhhcchHH-------------------H
Confidence 8999888886555567777888888887765320 11111100000 1
Q ss_pred HHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCCCh
Q 001397 238 ALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTND 317 (1086)
Q Consensus 238 ~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~~~ 317 (1086)
.+..+.++|. ..++..+..+++||..++... .
T Consensus 175 il~~l~~~l~------------------------------------------~~~~~vR~~A~~aL~~~~~~~------~ 206 (852)
T 4fdd_A 175 MIPKFLQFFK------------------------------------------HSSPKIRSHAVACVNQFIISR------T 206 (852)
T ss_dssp HHHHHTTTTT------------------------------------------CSSHHHHHHHHHHHHTTTTTT------C
T ss_pred HHHHHHHHhc------------------------------------------CCCHHHHHHHHHHHHHHHhcc------c
Confidence 1111222111 012234555666665444321 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhcccccCcH
Q 001397 318 AARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSV 397 (1086)
Q Consensus 318 ~~~~~~l~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~~fT~~~l~~~~~~~~s~ 397 (1086)
+....++..++..+...+.. .+++.-...|+.+.++...++- .+. .+++.+-.+....++.. .++..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d----~~~~vr~~a~~~L~~l~~~~~~-~~~------~~l~~l~~~l~~~~~~~--~~~vr 273 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGD----EEPEVRKNVCRALVMLLEVRMD-RLL------PHMHNIVEYMLQRTQDQ--DENVA 273 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCHH-HHG------GGHHHHHHHHHHHHTCS--SHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhCHH-HHH------HHHHHHHHHHHHHccCC--cHHHH
Confidence 22223334444444444432 2334444678888888776631 111 12333444444443321 12233
Q ss_pred HHHHHHHHHhhcccCCcCCCCcchhhhhHHHHHHHHHhhhhcccccc---cCCCCCCCCC-----CcHHHHHHHHhhhhh
Q 001397 398 YYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAG---FPDDLSDNPL-----DNVELLQDQLDCFPY 469 (1086)
Q Consensus 398 ~~LL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi~srl~~~~~~---~~ee~~e~~~-----~d~~~~~~~le~i~~ 469 (1086)
...+++|..+...... ...+..+...+... +...|...+.. ..+|.+|++. ++......-...++.
T Consensus 274 ~~a~e~l~~l~~~~~~-----~~~~~~~~~~l~p~-ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 274 LEACEFWLTLAEQPIC-----KDVLVRHLPKLIPV-LVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp HHHHHHHHHHTTSTTH-----HHHHTTTHHHHHHH-HHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhH-----HHHHHHHHHHHHHH-HHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 4579999998764210 12233344444443 22223211100 0011001111 111222234456666
Q ss_pred hhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHhccccccCCCccchhhhchHHHHHH
Q 001397 470 LCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARV 549 (1086)
Q Consensus 470 l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v 549 (1086)
+++..++...+.+...+.+.++ . .++.. .+.-.|. .|.+..+... .....+ ..++..+
T Consensus 348 la~~~~~~~~~~l~~~l~~~l~-------~--~~~~~----R~aa~~a---lg~i~~~~~~-----~~~~~l-~~~l~~l 405 (852)
T 4fdd_A 348 LANVYRDELLPHILPLLKELLF-------H--HEWVV----KESGILV---LGAIAEGCMQ-----GMIPYL-PELIPHL 405 (852)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHT-------C--SSHHH----HHHHHHH---HHHTTTTTHH-----HHGGGH-HHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhc-------C--CCHHH----HHHHHHH---HHHHHhcchH-----HHHHHH-HHHHHHH
Confidence 7666666666655555554221 1 12211 1123333 3444322110 000111 2344444
Q ss_pred HHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcc
Q 001397 550 LQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLK 629 (1086)
Q Consensus 550 ~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~ 629 (1086)
+.+++ + ..+++-.+..|-+.++.... .+... . .-...++..++ ..+.
T Consensus 406 ~~~l~------d-------~~~~Vr~~a~~~l~~l~~~~-~~~~~---~------------~~~~~ll~~L~----~~L~ 452 (852)
T 4fdd_A 406 IQCLS------D-------KKALVRSITCWTLSRYAHWV-VSQPP---D------------TYLKPLMTELL----KRIL 452 (852)
T ss_dssp HHHTT------C-------SSHHHHHHHHHHHHHTHHHH-HHSCT---T------------TTHHHHHHHHH----HHHT
T ss_pred HHHcC------C-------CCHHHHHHHHHHHHHHHHHh-ccchH---H------------HHHHHHHHHHH----HHHh
Confidence 44441 1 12668888888888776433 11100 0 01122233333 3332
Q ss_pred CCCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHhcccCCCCcccccccchhhHHHHHHHHHHHhc-C---CCh
Q 001397 630 CYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM-E---ESP 705 (1086)
Q Consensus 630 ~~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~l~~~~~~~~r~~~~~al~~l~~~-~---~~~ 705 (1086)
..++.+...+..-|..++.+... .+ .|.+..++..... .++.+. .+....++++++.+... . ...
T Consensus 453 --d~~~~vr~~a~~aL~~l~~~~~~--~l--~~~l~~ll~~L~~----~l~~~~-~~~~~~~~~ai~~l~~~~~~~~~~~ 521 (852)
T 4fdd_A 453 --DSNKRVQEAACSAFATLEEEACT--EL--VPYLAYILDTLVF----AFSKYQ-HKNLLILYDAIGTLADSVGHHLNKP 521 (852)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHHGG--GG--GGGHHHHHHHHHH----HHHHCC-HHHHHHHHHHHHHHHHHHGGGGCCH
T ss_pred --CCCHHHHHHHHHHHHHHHHHhhH--hh--HhHHHHHHHHHHH----HHHHhC-hHHHHHHHHHHHHHHHHhhhhhccH
Confidence 23567888888888887764321 11 3344444443311 111111 23334678888877532 1 246
Q ss_pred HHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHHHhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhh-----
Q 001397 706 VKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISH----- 780 (1086)
Q Consensus 706 ~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~----- 780 (1086)
+|+..+|.++...|..+... +++. ..+++++..++.+... .+....+-+++.....+...+..
T Consensus 522 ~~~~~l~p~l~~~~~~l~d~------~~~~----~~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~ 589 (852)
T 4fdd_A 522 EYIQMLMPPLIQKWNMLKDE------DKDL----FPLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNN 589 (852)
T ss_dssp HHHHHHHHHHHHHHHHSCTT------CTTH----HHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc------cHHH----HHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999988876522 1222 2567888888888754 23344444444433333222210
Q ss_pred ----h--cCCchhHHHHHHHHHHHhhcccceeeccCCChhhHHHH-HHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHH
Q 001397 781 ----W--TDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLF-REVSKLIVAYGSRVLSLPNAADIYAYKYKGMWIC 853 (1086)
Q Consensus 781 ----y--~~~~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~~Lf-~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~l 853 (1086)
+ ..+.++...+++.+..++..-+..+ .+ + +. ..+..++..+ +..+ ..+.-+....+
T Consensus 590 ~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~-----~~--~-~~~~~~~~~l~~~----l~~~-----~~~vr~~a~~~ 652 (852)
T 4fdd_A 590 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI-----EQ--L-VARSNILTLMYQC----MQDK-----MPEVRQSSFAL 652 (852)
T ss_dssp HCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG-----HH--H-HHTCCHHHHHHHH----TTCS-----SHHHHHHHHHH
T ss_pred cCCcccCCCcchHHHHHHHHHHHHHHHHhHhH-----HH--H-hcCCcHHHHHHHH----hCCC-----ChhHHHHHHHH
Confidence 1 1144566777788888876321100 00 0 00 0011111111 1111 11111222223
Q ss_pred HHHHHHhHhCCccccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHH
Q 001397 854 FTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMH 933 (1086)
Q Consensus 854 l~il~~~ls~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~ 933 (1086)
+.-+...+.+++ . +.+..++..+.+.+ . ..+|+.++.--..+..++....+.+...- ..
T Consensus 653 l~~l~~~~~~~~------~----~~l~~~lp~l~~~l----~---~~~~~v~~~a~~alg~i~~~~~~~~~p~~----~~ 711 (852)
T 4fdd_A 653 LGDLTKACFQHV------K----PCIADFMPILGTNL----N---PEFISVCNNATWAIGEISIQMGIEMQPYI----PM 711 (852)
T ss_dssp HHHHHHHCGGGT------G----GGHHHHHHHHHHTC----C---TTSHHHHHHHHHHHHHHHHHHGGGGGGGT----HH
T ss_pred HHHHHHHhhHHH------H----HHHHHHHHHHHHHc----C---ccchHHHHHHHHHHHHHHHHhhHhHHHHH----HH
Confidence 333332222221 1 22444444444421 1 13577777776677777666554333322 34
Q ss_pred HHHHHHHhhcCC--ChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhc-cCCC
Q 001397 934 IVGSLESGLKGL--DTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLF-EDCG 1010 (1086)
Q Consensus 934 li~sl~~gl~~~--~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~-~~~~ 1010 (1086)
++..+..-+++. ...+.+.++.+|..|+..+-.... | .+.+++...++.+-. +|..
T Consensus 712 il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~-------~--------------~l~~~~~~~~~~l~~~~d~~ 770 (852)
T 4fdd_A 712 VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA-------P--------------MLQQFIRPWCTSLRNIRDNE 770 (852)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHG-------G--------------GHHHHHHHHHHHHHTSCSSH
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhC-------c--------------cHHHHHHHHHHHhccccccH
Confidence 444444444443 357888898999888875321110 1 134455655555532 3332
Q ss_pred chhcchhhhHHHHhcCHHH----HHHHHHHHHhcCChhhHHHHHHHHHHHHhhh
Q 001397 1011 NQWSLSRPMLSLILISEQV----FSDLKAQILTSQPVDQHQRLSVCFDKLMADV 1060 (1086)
Q Consensus 1011 ~~~~~s~~L~~LI~~~~~~----f~~l~~~li~~q~~~~~~~l~~aF~~L~~~i 1060 (1086)
.--.+-+.|..+|..+|+. |-.+...+.+-..+ .+.+.+.|.+++.+.
T Consensus 771 e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~l~~~ 822 (852)
T 4fdd_A 771 EKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP--KDDLRDMFCKILHGF 822 (852)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHH
Confidence 1126778888899999975 33333443332222 457888888887643
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.61 E-value=4.1e-09 Score=136.46 Aligned_cols=616 Identities=11% Similarity=0.073 Sum_probs=326.9
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhh--c------c
Q 001397 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--H------S 71 (1086)
Q Consensus 1 ~~~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~--~------~ 71 (1086)
|++++++.++.....+ ++++.| ||+.|.++.++|++|..+-.|+.+. .+..++++|+..|++.|++ . .
T Consensus 1 M~d~~~l~~~L~~~~s-pd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAESVI-ASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHTTS-GGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCcHHHHHHHHHHhcC-CCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 7888888888877654 455566 9999999999999999999999654 5689999999999999987 3 5
Q ss_pred cChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCC
Q 001397 72 LALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD 151 (1086)
Q Consensus 72 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~ 151 (1086)
+++++|..|| +.+++.+.+. ++.|++++..+++.|.+.+|++
T Consensus 78 l~~~~k~~ik----------------------------------~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~ 119 (960)
T 1wa5_C 78 LPANNVELIK----------------------------------KEIVPLMISL----PNNLQVQIGEAISSIADSDFPD 119 (960)
T ss_dssp SCHHHHHHHH----------------------------------HHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHH----------------------------------HHHHHHHHhC----CHHHHHHHHHHHHHHHHhhCcc
Confidence 8999999999 9999988763 3789999999999999999998
Q ss_pred ChhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhh--hhHHHHHHHHHHHHhhhhh
Q 001397 152 DDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQ--SLFQIFQISLTSLGQLKSD 229 (1086)
Q Consensus 152 ~~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~--~L~~if~~~~~~L~~~~~~ 229 (1086)
.|| ++++.+.+.+.+++..+..-++.+|..++.++...- .+-+.....+.-++.. .+..+|....+.+++...+
T Consensus 120 ~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~--~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~ 195 (960)
T 1wa5_C 120 RWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF--RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENN 195 (960)
T ss_dssp TCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred chh--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 888 899999988865666778889999999887654210 0001000010001100 0112222111111110000
Q ss_pred hH-HHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhc
Q 001397 230 VA-SRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLAS 308 (1086)
Q Consensus 230 ~~-~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~s 308 (1086)
.. .+..-.++ ..+++|+..+.+
T Consensus 196 ~~~~~~~~~~~---------------------------------------------------------~~~~k~~~~l~~ 218 (960)
T 1wa5_C 196 KASLNILFDVL---------------------------------------------------------LVLIKLYYDFNC 218 (960)
T ss_dssp CHHHHHHHHHH---------------------------------------------------------HHHHHHHHHHHS
T ss_pred HHHHHHHHHHH---------------------------------------------------------HHHHHHHHHHhh
Confidence 00 00000111 112222222221
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHhccccC--CC---c------hhHHHHHHHHhhhhhhcchhhhhcccChHHHHH
Q 001397 309 VRRSLFTNDAARSKFLAHLMTGTKEILQTGQGL--AD---H------DNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQ 377 (1086)
Q Consensus 309 l~~s~f~~~~~~~~~l~~~~~~i~~il~~~~~l--~~---~------~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~ 377 (1086)
.. . ++.-...+...+..+..++...... .+ . ..-...|+.+.++...|+ . .|..++.
T Consensus 219 ~~---~--~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~------~f~~~~~ 286 (960)
T 1wa5_C 219 QD---I--PEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE-D------VFGPMIN 286 (960)
T ss_dssp SC---C--CHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH-H------HHHHHHH
T ss_pred cc---c--hHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHH
Confidence 10 0 1111112222333333333321100 01 0 112346777888877764 2 2234455
Q ss_pred HHHHHHHHhhhhcc--c-ccCcHHHHHHHHHHhhcccCCcCCCCcchhh--hhHHHHHHHHHhhhhcccccccCCCCCCC
Q 001397 378 LVAEFTLKSLQSWQ--W-ASSSVYYLLGLWSRLVTSVPYLKGDAPSLLD--EFVPKITEGFITSRFNSVQAGFPDDLSDN 452 (1086)
Q Consensus 378 ~l~~fT~~~l~~~~--~-~~~s~~~LL~~W~~lv~~~~~~~~~~~~~l~--~~~~~I~~~yi~srl~~~~~~~~ee~~e~ 452 (1086)
.+..++...+..+. + .++.....+++|..++....+ ...+. .+..++.+..+...|.-++... +..++|
T Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-----~~~~~~~~~l~~li~~~i~~~m~~~~~d~-e~w~~d 360 (960)
T 1wa5_C 287 EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-----FEIFNNESAMNNITEQIILPNVTLREEDV-ELFEDD 360 (960)
T ss_dssp HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-----HGGGCSHHHHHHHHHHTHHHHHSCCGGGT-TTTTTC
T ss_pred HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-----HHHHcCchHHHHHHHHHhHHhcCCCHHHH-HHHhcC
Confidence 55555555554432 2 223455789999988763211 12222 4556666544555554322111 111111
Q ss_pred C---------CCcHHHH-HHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHH
Q 001397 453 P---------LDNVELL-QDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIA 522 (1086)
Q Consensus 453 ~---------~~d~~~~-~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g 522 (1086)
| .+|.+.. ..-.+.+..+++...+...+.+.+.+.+.+++|.. .+..+| . .-.-.++.+|
T Consensus 361 p~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~---~~~~~w------~-~reaal~alg 430 (960)
T 1wa5_C 361 PIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMS---DPSKNW------K-FKDLYIYLFT 430 (960)
T ss_dssp HHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-------CH------H-HHHHHHHHHH
T ss_pred HHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhcc---CcchhH------H-HHHHHHHHHH
Confidence 1 0111111 12334555666666666666777777766665532 111122 1 3355666777
Q ss_pred HHhcc-cccc-C-CCccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHH
Q 001397 523 AIVKI-KQCT-G-CSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQ 599 (1086)
Q Consensus 523 ~~l~~-~~~~-~-~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~ 599 (1086)
++..+ .... + ........++..+...|+..++ +.. ...|.+-.+.+|++.+|+..+ . ++
T Consensus 431 aia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~--~~~--------~~~p~vr~~a~~~lg~~~~~~-~-------~~ 492 (960)
T 1wa5_C 431 ALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT--SNN--------IPHIILRVDAIKYIYTFRNQL-T-------KA 492 (960)
T ss_dssp HHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH--CSS--------CSCHHHHHHHHHHHHHTGGGS-C-------HH
T ss_pred HHHHHhccccCCcccccccccHHHHHHHHhHHHhc--CCC--------CCCceehHHHHHHHHHHHhhC-C-------HH
Confidence 77532 2111 0 0001111333334444444442 110 123789999999999998643 1 11
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchh--------hhhhhhcchhHHHHHHhc
Q 001397 600 LYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYM--------TGKLLLKLDTIKFIVANH 671 (1086)
Q Consensus 600 ~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~--------~~~~l~~~~~~~~Ll~~~ 671 (1086)
. +.-++..+...|. ..+..|...|...|..++.... .++..+ .|.+..+++..
T Consensus 493 ~----------------l~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l-~p~l~~ll~~L 553 (960)
T 1wa5_C 493 Q----------------LIELMPILATFLQ--TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNL 553 (960)
T ss_dssp H----------------HHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT-TTTHHHHHHHH
T ss_pred H----------------HHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHhcccccccccccccHHHh-hhhHHHHHHHH
Confidence 1 2222223333333 2356677788888888776321 112112 25555555443
Q ss_pred ccCCCCcccc----cccchhhHHHHHHHHHHHhc--CCChHHHHHhhHHHHHHHHHhccCCCcccccHHHHHHHHHHHHH
Q 001397 672 TREHFPFLEE----YRCSRSRTTFYYTIGWLIFM--EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRD 745 (1086)
Q Consensus 672 ~~~~~~~l~~----~~~~~~r~~~~~al~~l~~~--~~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~ii~ll~~ 745 (1086)
.. .++. |........++++++.++.. +.-..|+..+|.++...+..+..++ .++.. ...++++
T Consensus 554 ~~----ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~----~~~~~---~~~~~e~ 622 (960)
T 1wa5_C 554 IA----LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP----SNPRF---THYTFES 622 (960)
T ss_dssp HH----HHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC----CCHHH---HHHHHHH
T ss_pred HH----HHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC----CCcHH---HHHHHHH
Confidence 11 1111 11011234678888887643 2223478888888888888775444 22222 2457888
Q ss_pred hhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCCchhHHHHHHHHHHHhhc
Q 001397 746 LRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLN 801 (1086)
Q Consensus 746 l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~~~v~~~iLkl~~e~v~n 801 (1086)
+..++++..+ ..+..+.+.+.|. +..+++. +..++...++.++..++..
T Consensus 623 l~~l~~~~~~-~~~~~~~~~~~p~----~~~iL~~--~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 623 IGAILNYTQR-QNLPLLVDSMMPT----FLTVFSE--DIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHTSCG-GGHHHHHHHHHHH----HHHHHHT--TCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCc-chHHHHHHHHHHH----HHHHHHh--hhHhhHHHHHHHHHHHHHh
Confidence 8888887433 3455555555554 3444443 2345666667776666653
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.37 E-value=3.8e-07 Score=116.51 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=120.6
Q ss_pred HHHHHHHHHH-hcCCCHHHHHHHHHHHhhhccC--cccHHHHHHHHhhC-CChHHHHHHHHHHHHHHhh-----------
Q 001397 5 AQLEALCERL-YNSQDSVERAHAENTLKCFSVN--TDYISQCQFILDNA-LTPYALMLASSSLLKQVTE----------- 69 (1086)
Q Consensus 5 ~~le~~~~~~-y~~~~~~~r~~ae~~l~~f~~~--~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~~----------- 69 (1086)
.++.++.+.+ ++ +|++.|++||+.|.+++++ |++|..+..||.++ .++.++++|+..|++.|.+
T Consensus 4 ~~l~~~L~~~~~s-~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 4 AEFAQLLENSILS-PDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHHcccC-cCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 5777888777 64 5778999999999999875 99999999999876 5899999999999998753
Q ss_pred --cc-cChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q 001397 70 --HS-LALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTK 146 (1086)
Q Consensus 70 --~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K 146 (1086)
.. +++++|..|| +.+++.+.+ .++.+++++..+++.|.+
T Consensus 83 ~~~~~l~~~~~~~ik----------------------------------~~ll~~l~~----~~~~vr~~~~~~l~~i~~ 124 (861)
T 2bpt_A 83 RWITQVSPEAKNQIK----------------------------------TNALTALVS----IEPRIANAAAQLIAAIAD 124 (861)
T ss_dssp HHHHHSCHHHHHHHH----------------------------------HHHHHHHTC----SSHHHHHHHHHHHHHHHH
T ss_pred hHhhhCCHHHHHHHH----------------------------------HHHHHHHCC----CchHHHHHHHHHHHHHHH
Confidence 22 8999999999 999997643 247789999999999999
Q ss_pred hccCC-ChhhhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcc
Q 001397 147 FGWFD-DDRFRDLVKESTNFLSQA-TSDHYAIGLKILNQLVSEMN 189 (1086)
Q Consensus 147 ~~w~~-~~~~~~~i~~v~~~~~~~-~~~~~~~gl~ll~~lv~e~~ 189 (1086)
..|+. .|+ ++++.+.+.+..+ ++.....++.++..+..++.
T Consensus 125 ~~~p~~~w~--~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 125 IELPHGAWP--ELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp HHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred hhCcccccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 99995 676 8899998888655 56778888999999998865
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.93 E-value=0.00039 Score=88.67 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccC--cccHHHHHHHHhhC-CChHHHHHHHHHHHHHHh-----------h--c
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSVN--TDYISQCQFILDNA-LTPYALMLASSSLLKQVT-----------E--H 70 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~~--~~~~~~~~~iL~~s-~~~~~~f~a~~~L~~~i~-----------~--~ 70 (1086)
+.++.+.++ +++++.|++|++.|.++.++ ++.|..+..+|.+. .++.++.+|+..|++.+. + .
T Consensus 3 l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 444455555 45788999999999999876 88999999999775 578999999999999874 2 4
Q ss_pred ccChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccC
Q 001397 71 SLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWF 150 (1086)
Q Consensus 71 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~ 150 (1086)
.++++.|..|| +.+++.+.+. +..+ +++.++++.|.+..|+
T Consensus 82 ~l~~~~~~~ik----------------------------------~~ll~~l~~~----~~~~-~~~~~~l~~i~~~~~~ 122 (876)
T 1qgr_A 82 AIDANARREVK----------------------------------NYVLHTLGTE----TYRP-SSASQCVAGIACAEIP 122 (876)
T ss_dssp TSCHHHHHHHH----------------------------------HHHHHHTTTC----CSSS-CHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHH----------------------------------HHHHHHhCCC----cHHH-HHHHHHHHHHHHhhCc
Confidence 58889999999 8888876432 2345 8999999999999887
Q ss_pred -CChhhhhHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc
Q 001397 151 -DDDRFRDLVKESTNFLSQA--TSDHYAIGLKILNQLVSEM 188 (1086)
Q Consensus 151 -~~~~~~~~i~~v~~~~~~~--~~~~~~~gl~ll~~lv~e~ 188 (1086)
+.|+ ++++.+.+.+... ++.....++..+..++.++
T Consensus 123 ~~~w~--~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (876)
T 1qgr_A 123 VNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (876)
T ss_dssp GTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ccccH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5676 7888888887655 5567788888888888775
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.41 E-value=2.5e-06 Score=100.26 Aligned_cols=231 Identities=14% Similarity=0.166 Sum_probs=161.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhcc--CcccHHHHHHHHhhCC-ChHHHHHHHHHHHHHHhh-------------c
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSV--NTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE-------------H 70 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~--~~~~~~~~~~iL~~s~-~~~~~f~a~~~L~~~i~~-------------~ 70 (1086)
+.++...+++ ++++.|++||+.|.++.+ .|++|..+..||.+++ ++.++.+|+..|++.+.+ .
T Consensus 3 l~~~L~~~~s-~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 3 LITILEKTVS-PDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 4556666664 567899999999999987 4899999999998864 789999999999999853 3
Q ss_pred ccChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccC
Q 001397 71 SLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWF 150 (1086)
Q Consensus 71 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~ 150 (1086)
.+++++|..|| +.+++.+.+. +..+ +++..+++.|.+..|+
T Consensus 82 ~l~~~~~~~ik----------------------------------~~ll~~l~~~----~~~v-~~~~~~i~~ia~~~~~ 122 (462)
T 1ibr_B 82 AIDANARREVK----------------------------------NYVLQTLGTE----TYRP-SSASQCVAGIACAEIP 122 (462)
T ss_dssp TSCHHHHHHHH----------------------------------HHHHHHTTCC----CSSS-CSHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHH----------------------------------HHHHHHhCCC----Cchh-hHHHHHHHHHHHHhcc
Confidence 48889999999 8888876532 3456 8999999999999998
Q ss_pred C-ChhhhhHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhh
Q 001397 151 D-DDRFRDLVKESTNFLSQA--TSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLK 227 (1086)
Q Consensus 151 ~-~~~~~~~i~~v~~~~~~~--~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~ 227 (1086)
+ .|+ ++++.+.+.+..+ +...+..++..|..++.++.... + ...+..++......|+...
T Consensus 123 ~~~w~--~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~--------------~-~~~~~~ll~~l~~~l~~~~ 185 (462)
T 1ibr_B 123 VNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ--------------L-QDKSNEILTAIIQGMRKEE 185 (462)
T ss_dssp GTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG--------------T-GGGHHHHHHHHHHHHSTTC
T ss_pred ccccH--HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh--------------h-HhHHHHHHHHHHHHhCCCC
Confidence 6 576 7899998888655 56778899999999998864210 2 2345667777777665431
Q ss_pred hhhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHh
Q 001397 228 SDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLA 307 (1086)
Q Consensus 228 ~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~ 307 (1086)
. + ..+...+++.+..++.+. ... . ..|. ..+.+++.+........+..+..+++||..++
T Consensus 186 ~-~-~~vr~~a~~~l~~~~~~~--~~~----~---------~~~~---~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 186 P-S-NNVKLAATNALLNSLEFT--KAN----F---------DKES---ERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp C-C-HHHHHHHHHHHHHHTTTT--HHH----H---------TSHH---HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred C-C-HHHHHHHHHHHHHHHHHH--HHh----h---------hhhH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 0 1 335567777777766431 100 0 0111 01113555554433344667788999999998
Q ss_pred cccccCC
Q 001397 308 SVRRSLF 314 (1086)
Q Consensus 308 sl~~s~f 314 (1086)
......|
T Consensus 246 ~~~~~~~ 252 (462)
T 1ibr_B 246 SLYYQYM 252 (462)
T ss_dssp HHCGGGC
T ss_pred HHHHHHH
Confidence 7665444
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=91.46 E-value=9 Score=50.28 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCc----------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccCh
Q 001397 5 AQLEALCERLYNSQDSVERAHAENTLKCFSVNT----------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLAL 74 (1086)
Q Consensus 5 ~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~----------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~ 74 (1086)
.++.++.+.+. ++|+..|.+|.+-|.+.-+.+ ...+.+...|. +.++.++-.|+.+|..++.. +++
T Consensus 6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~--~~~ 81 (1230)
T 1u6g_C 6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK--VKE 81 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT--SCH
T ss_pred hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh--CCH
Confidence 45777777755 467788999988776654322 22334444454 67899999999999887765 555
Q ss_pred hhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC--
Q 001397 75 QLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-- 152 (1086)
Q Consensus 75 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~-- 152 (1086)
+++..+. ..+++-+ .+....|+...+.+++.+....+.+.
T Consensus 82 ~~~~~i~----------------------------------~~Ll~~l----~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 82 YQVETIV----------------------------------DTLCTNM----LSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHH----------------------------------HHHHHHT----TCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHH----------------------------------HHHHHHh----cCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 5555554 5555533 23345779999999999998777652
Q ss_pred -----hhhhhHHHHHHHHHh-hccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhh
Q 001397 153 -----DRFRDLVKESTNFLS-QATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQL 226 (1086)
Q Consensus 153 -----~~~~~~i~~v~~~~~-~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~ 226 (1086)
...+.+++.+...+. ..+.....-++..+.+++..+...- . .++..+....+..|..
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l---------------~-~~~~~ll~~l~~~L~~- 186 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL---------------V-NFHPSILTCLLPQLTS- 186 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSC---------------T-TTHHHHHHHHGGGGGC-
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHH---------------H-HHHHHHHHHHHHHHcC-
Confidence 113367777777774 2445677888899999987764311 0 1223333333333322
Q ss_pred hhhhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhc-CCccHHHHHHHHHH
Q 001397 227 KSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAIT-EAPLSKEALECLVR 305 (1086)
Q Consensus 227 ~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~-~~~~~~~~l~cL~~ 305 (1086)
+. ..+-..++..+-.+.... +. + +. +.+++.+....... .+..+..+.+|+..
T Consensus 187 --~~-~~vR~~a~~al~~l~~~~--~~---~-----------------~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 187 --PR-LAVRKRTIIALGHLVMSC--GN---I-----------------VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp --SS-HHHHHHHHHHHHHHTTTC--------------------------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred --Cc-HHHHHHHHHHHHHHHHhc--CH---H-----------------HH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11 234445555555443211 10 0 11 23455555544333 24577788999999
Q ss_pred HhcccccCCCChHHHHHHHHHHHHHHHHHHh
Q 001397 306 LASVRRSLFTNDAARSKFLAHLMTGTKEILQ 336 (1086)
Q Consensus 306 l~sl~~s~f~~~~~~~~~l~~~~~~i~~il~ 336 (1086)
++...|..| ..|+..++..+...+.
T Consensus 241 l~~~~~~~~------~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 241 ISRQAGHRI------GEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp HHHHSSGGG------TTSCTTHHHHHHHHHS
T ss_pred HHHHhHHHH------HHHHHHHHHHHHHHhc
Confidence 887554433 2356666666666665
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=65.40 E-value=1.2e+02 Score=30.65 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=122.3
Q ss_pred CcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchh
Q 001397 36 NTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVG 115 (1086)
Q Consensus 36 ~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1086)
.+..++.....|. |.++.++..|+..|.+.+.. +.+.+..+. ..| .+
T Consensus 10 ~~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~---~~~~~~~~~-~~g---~i------------------------- 56 (252)
T 4db8_A 10 HGSELPQMTQQLN-SDDMQEQLSATRKFSQILSD---GNEQIQAVI-DAG---AL------------------------- 56 (252)
T ss_dssp TTCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHH---HHHHHHHHH-HTT---HH-------------------------
T ss_pred ccchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcC---CCchHHHHH-HcC---cH-------------------------
Confidence 3455777777774 66788999999999877665 122222221 000 00
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChh--hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCC
Q 001397 116 NYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDR--FRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNP 193 (1086)
Q Consensus 116 ~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~--~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~ 193 (1086)
..+++++.. + ..-++...+.++..+....-..... ....++.+.+++..++++.+..++..|..+... .
T Consensus 57 ~~L~~lL~~--~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~- 127 (252)
T 4db8_A 57 PALVQLLSS--P--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----G- 127 (252)
T ss_dssp HHHHHGGGC--S--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS----C-
T ss_pred HHHHHHHcC--C--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----C-
Confidence 555555532 2 2567777777777776522100000 113566677777655566677777777777321 1
Q ss_pred CCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccc
Q 001397 194 GLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRP 273 (1086)
Q Consensus 194 ~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~ 273 (1086)
.. +...-.+...++. .++.|+.. ...+...++..+.++...+. .-+.
T Consensus 128 ----~~--~~~~~~~~~~i~~----L~~lL~~~----~~~v~~~a~~~L~~l~~~~~-------------------~~~~ 174 (252)
T 4db8_A 128 ----NE--QIQAVIDAGALPA----LVQLLSSP----NEQILQEALWALSNIASGGN-------------------EQIQ 174 (252)
T ss_dssp ----HH--HHHHHHHTTHHHH----HHHGGGCS----CHHHHHHHHHHHHHHTTSCH-------------------HHHH
T ss_pred ----ch--HHHHHHHCCCHHH----HHHHHhCC----CHHHHHHHHHHHHHHHcCCh-------------------HHHH
Confidence 11 1111122222322 22333221 12355566665555432210 1112
Q ss_pred cccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCCChHHHHHHHHH-HHHHHHHHHhccccCCCchhHHHHHH
Q 001397 274 VLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAH-LMTGTKEILQTGQGLADHDNYHEYCR 352 (1086)
Q Consensus 274 ~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~~~~~~~~~l~~-~~~~i~~il~~~~~l~~~~~~~~~c~ 352 (1086)
.+.+.+.++.+.++....++.+...++.+|..++. .+++.+...... .+..+..++.. .+++.-...+.
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~A~~ 244 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS------GGNEQKQAVKEAGALEKLEQLQSH----ENEKIQKEAQE 244 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT------SCHHHHHHHHHTTHHHHHHTTTTC----SSSHHHHTHHH
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc------CCHHHHHHHHHCCcHHHHHHHhCC----CCHHHHHHHHH
Confidence 24456677888887765667789999999999984 223333333322 33333333332 23444444666
Q ss_pred HHhhhh
Q 001397 353 LLGRFR 358 (1086)
Q Consensus 353 ll~rl~ 358 (1086)
.|..+.
T Consensus 245 ~L~~l~ 250 (252)
T 4db8_A 245 ALEKLQ 250 (252)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 666554
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=60.04 E-value=2.4e+02 Score=32.36 Aligned_cols=268 Identities=11% Similarity=0.065 Sum_probs=140.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhccC----------cccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhhh
Q 001397 8 EALCERLYNSQDSVERAHAENTLKCFSVN----------TDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLR 77 (1086)
Q Consensus 8 e~~~~~~y~~~~~~~r~~ae~~l~~f~~~----------~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~~ 77 (1086)
..+++.+-.+.++..|..|-..|..+... .+.++.+-.+|. +.++.++..|+.+|.++... +++.|
T Consensus 133 ~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~---~~~~~ 208 (530)
T 1wa5_B 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGD---STDYR 208 (530)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC---Cccch
Confidence 33443333333566777777777776652 345666777776 46788888888888876543 11222
Q ss_pred hhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC--hhh
Q 001397 78 LDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD--DRF 155 (1086)
Q Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~--~~~ 155 (1086)
..+. .+| .+ ..+++.+.. ...-++...+.++..+....=+.. ...
T Consensus 209 ~~~~-~~~---~l-------------------------~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 255 (530)
T 1wa5_B 209 DYVL-QCN---AM-------------------------EPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVV 255 (530)
T ss_dssp HHHH-HTT---CH-------------------------HHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHH
T ss_pred HHHH-HcC---cH-------------------------HHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHH
Confidence 2211 000 00 455554432 245677778888888886431211 112
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQ 235 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~ 235 (1086)
...++.+..++...+++....++..|..+...- -. .++. ......++.+ +..|+.. ...+.
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--------~~-~~~~--~~~~~~v~~L----v~lL~~~----~~~v~ 316 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGP--------QE-AIQA--VIDVRIPKRL----VELLSHE----STLVQ 316 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--------HH-HHHH--HHHTTCHHHH----HHGGGCS----CHHHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--------HH-HHHH--HHhcCcHHHH----HHHHCCC----ChhhH
Confidence 356777777776555566677777777776321 01 1111 1222223222 2233221 12344
Q ss_pred HHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCC
Q 001397 236 ELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFT 315 (1086)
Q Consensus 236 ~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~ 315 (1086)
..++.++-++..-+ ......+.+...+..+..+....++.....+..+|..++. .
T Consensus 317 ~~a~~~L~~l~~~~-------------------~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~------~ 371 (530)
T 1wa5_B 317 TPALRAVGNIVTGN-------------------DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA------G 371 (530)
T ss_dssp HHHHHHHHHHTTSC-------------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT------S
T ss_pred HHHHHHHHHHHcCC-------------------HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc------C
Confidence 55555554433211 0111123445677777777665567788899999999885 1
Q ss_pred ChHHHHHHH-HHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhh
Q 001397 316 NDAARSKFL-AHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVN 360 (1086)
Q Consensus 316 ~~~~~~~~l-~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~ 360 (1086)
+++....++ ..++..+..++.. .+.+.-...+..+..+...
T Consensus 372 ~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 372 NTEQIQAVIDANLIPPLVKLLEV----AEYKTKKEACWAISNASSG 413 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHH----SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHhc
Confidence 223332222 2345555555543 1233334566666666554
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=55.53 E-value=2.8e+02 Score=31.71 Aligned_cols=265 Identities=10% Similarity=0.032 Sum_probs=143.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhhhcc-Cc----------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccCh
Q 001397 6 QLEALCERLYNSQDSVERAHAENTLKCFSV-NT----------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLAL 74 (1086)
Q Consensus 6 ~le~~~~~~y~~~~~~~r~~ae~~l~~f~~-~~----------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~ 74 (1086)
.++.+.+.+.. ++++.|..|-..|..+.. .+ +.++.+-.+|..+.++.+++.|+.+|.++... ++
T Consensus 75 ~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---~~ 150 (528)
T 4b8j_A 75 SLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG---TS 150 (528)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS---CH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CH
Confidence 36677777754 467788888888877633 21 46788888898777799999999999877543 22
Q ss_pred hhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChh
Q 001397 75 QLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDR 154 (1086)
Q Consensus 75 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~ 154 (1086)
+.+..+. ..| . + ..+++.+.. ...-|+...+.++..|... .+.
T Consensus 151 ~~~~~~~-~~g---~--------i-----------------~~L~~lL~~----~~~~v~~~a~~aL~~l~~~----~~~ 193 (528)
T 4b8j_A 151 ENTKVVI-DHG---A--------V-----------------PIFVKLLGS----SSDDVREQAVWALGNVAGD----SPK 193 (528)
T ss_dssp HHHHHHH-HTT---H--------H-----------------HHHHHHTTC----SCHHHHHHHHHHHHHHHHT----CHH
T ss_pred HHHHHHH-hCC---c--------H-----------------HHHHHHhcC----CCHHHHHHHHHHHHHHhCC----Chh
Confidence 3333222 001 0 0 555555432 2457888888888888752 222
Q ss_pred hh------hHHHHHHHHH-hhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhh
Q 001397 155 FR------DLVKESTNFL-SQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLK 227 (1086)
Q Consensus 155 ~~------~~i~~v~~~~-~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~ 227 (1086)
.+ ..++.+.+.+ ...+......++..|..+...- +. .... .....++. .+..|+..
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~--~~--~~~~--------~~~~~l~~----L~~lL~~~- 256 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK--PQ--PSFE--------QTRPALPA----LARLIHSN- 256 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS--SC--CCHH--------HHTTHHHH----HHHHTTCC-
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC--CC--CcHH--------HHHHHHHH----HHHHHCCC-
Confidence 22 2445555555 2334455666667777766432 11 1111 11222322 23333221
Q ss_pred hhhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHh
Q 001397 228 SDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLA 307 (1086)
Q Consensus 228 ~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~ 307 (1086)
...+...++..+..+.... ..-...+.+.+.+..+..+....++.....++.+|..++
T Consensus 257 ---~~~v~~~a~~aL~~l~~~~-------------------~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 257 ---DEEVLTDACWALSYLSDGT-------------------NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp ---CHHHHHHHHHHHHHHTSSC-------------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 1234445554444432110 011112345567777777766566778889999999998
Q ss_pred cccccCCCChHHHHHHH-HHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhh
Q 001397 308 SVRRSLFTNDAARSKFL-AHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRV 359 (1086)
Q Consensus 308 sl~~s~f~~~~~~~~~l-~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~ 359 (1086)
. .+++.+...+ ..++..+..++.... +++.-.+.|..+..+..
T Consensus 315 ~------~~~~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 315 T------GDDAQTQCIIDHQALPCLLSLLTQNL---KKSIKKEACWTISNITA 358 (528)
T ss_dssp T------SCHHHHHHHHTTTHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHT
T ss_pred c------CCHHHHHHHHHhhhHHHHHHHHcCCC---cHHHHHHHHHHHHHHHC
Confidence 5 2223232222 224555555665321 33444457777776654
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=46.48 E-value=2.3e+02 Score=28.14 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccCc----------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhh
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSVNT----------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQL 76 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~----------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~ 76 (1086)
++.+++.+-. ++++.|..|-..|..+.... +.++.+..+|.. .++.++-.|+.+|.++... .++.
T Consensus 4 i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~---~~~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASG---PDEA 78 (252)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS---CHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC---ChHH
Confidence 4555655544 45778888888888887543 356666667754 4588888888888766433 1222
Q ss_pred hhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC-h--
Q 001397 77 RLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-D-- 153 (1086)
Q Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~-~-- 153 (1086)
+..+. ..| .. ..+++.+. +...-++...+.++..+.... ++. .
T Consensus 79 ~~~~~-~~~-------~i---------------------~~l~~ll~----~~~~~v~~~a~~~L~~l~~~~-~~~~~~~ 124 (252)
T 4hxt_A 79 IKAIV-DAG-------GV---------------------EVLVKLLT----STDSEVQKEAARALANIASGP-DEAIKAI 124 (252)
T ss_dssp HHHHH-HTT-------HH---------------------HHHHHHTT----CSSHHHHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred HHHHH-HCC-------CH---------------------HHHHHHHc----CCCHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 22221 000 00 45555443 224677888888888877521 010 0
Q ss_pred hhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 001397 154 RFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASR 233 (1086)
Q Consensus 154 ~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~ 233 (1086)
.....++.+.+++...+++...-++..|..+... . ...++.. .+...++ ..+..|+.. ...
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~----~-----~~~~~~~--~~~~~i~----~L~~ll~~~----~~~ 185 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----P-----DEAIKAI--VDAGGVE----VLVKLLTST----DSE 185 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----C-----HHHHHHH--HHTTHHH----HHHHHTTCS----CHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----C-----HHHHHHH--HHCcCHH----HHHHHHCCC----CHH
Confidence 0114577777777655666777777777776532 1 1111211 1222222 223333321 134
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccc
Q 001397 234 LQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRR 311 (1086)
Q Consensus 234 l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~ 311 (1086)
+...++..+.++...+.. -+..+.+.+.++.+.++....++.....++.+|..++.-.+
T Consensus 186 v~~~a~~~L~~l~~~~~~-------------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 186 VQKEAARALANIASGPTS-------------------AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHTTSBHH-------------------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCHH-------------------HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 555666666665432211 11234556788888887766677889999999999987553
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=38.61 E-value=4.3e+02 Score=28.99 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=143.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccC----------cccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhh
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSVN----------TDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQL 76 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~~----------~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~ 76 (1086)
+..+++.+-.+.++..|..|-..|..+... .+.++....+|. +.++.++..|+.+|.++... +++.
T Consensus 66 i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~---~~~~ 141 (450)
T 2jdq_A 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGD---STMC 141 (450)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccC---CHHH
Confidence 445555554444667787887787776642 345666666665 45788888888888776543 1122
Q ss_pred hhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC--hh
Q 001397 77 RLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD--DR 154 (1086)
Q Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~--~~ 154 (1086)
|..+. ..| +. ..+++.+.. +.+.-++...+.++..+.+..-+.. ..
T Consensus 142 ~~~~~-~~~-------~i---------------------~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 189 (450)
T 2jdq_A 142 RDYVL-DCN-------IL---------------------PPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAK 189 (450)
T ss_dssp HHHHH-HTT-------CH---------------------HHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGG
T ss_pred HHHHH-HCC-------CH---------------------HHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 22211 000 00 555555431 2356788888889988887543322 11
Q ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 001397 155 FRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRL 234 (1086)
Q Consensus 155 ~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l 234 (1086)
....++.+.+++...+.+....++..|..+... . ...++. ......++.+ +..|+. + ...+
T Consensus 190 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~----~-----~~~~~~--~~~~~~i~~L----~~ll~~---~-~~~v 250 (450)
T 2jdq_A 190 VSPCLNVLSWLLFVSDTDVLADACWALSYLSDG----P-----NDKIQA--VIDAGVCRRL----VELLMH---N-DYKV 250 (450)
T ss_dssp TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----S-----HHHHHH--HHHTTTHHHH----HHHTTC---S-CHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC----C-----cHHHHH--HHHcCcHHHH----HHHHCC---C-chhH
Confidence 246777777877544555556666666665432 1 111111 1122233333 233321 1 1234
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCC
Q 001397 235 QELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLF 314 (1086)
Q Consensus 235 ~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f 314 (1086)
...++..+..+..-+ ..-+..+.+.+.++.+..+....++.....++.+|..++.
T Consensus 251 ~~~a~~~L~~l~~~~-------------------~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~------ 305 (450)
T 2jdq_A 251 VSPALRAVGNIVTGD-------------------DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA------ 305 (450)
T ss_dssp HHHHHHHHHHHTTSC-------------------HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHhhCC-------------------hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc------
Confidence 455555554433211 0011124455678888777665567788999999999884
Q ss_pred CChHHHHHHH-HHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhh
Q 001397 315 TNDAARSKFL-AHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVN 360 (1086)
Q Consensus 315 ~~~~~~~~~l-~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~ 360 (1086)
.+++.....+ ..++..+..++... +++.-...|..+..+...
T Consensus 306 ~~~~~~~~~~~~~~l~~L~~~l~~~----~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 306 GNRAQIQTVIDANIFPALISILQTA----EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHcC
Confidence 1223333333 23455555555532 233334566666666544
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=36.08 E-value=5.3e+02 Score=29.31 Aligned_cols=268 Identities=11% Similarity=0.045 Sum_probs=139.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccC---c--------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChh
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSVN---T--------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQ 75 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~~---~--------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~ 75 (1086)
++.+++.+.+ ++++.|..|-..|..+-.. + +.++.+..+|..+.++.+++.|+.+|.++... +++
T Consensus 89 i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~---~~~ 164 (530)
T 1wa5_B 89 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG---TSA 164 (530)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS---CHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CHH
Confidence 5566666654 4677788888888776432 2 45777777787766899999999999876543 122
Q ss_pred hhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcc--CCCh
Q 001397 76 LRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGW--FDDD 153 (1086)
Q Consensus 76 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w--~~~~ 153 (1086)
.+..+. ..| .+ ..+++.+... ..-|+...+.++..+...+- .+.-
T Consensus 165 ~~~~~~-~~g---~i-------------------------~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~~~~~~~~~ 211 (530)
T 1wa5_B 165 QTKVVV-DAD---AV-------------------------PLFIQLLYTG----SVEVKEQAIWALGNVAGDSTDYRDYV 211 (530)
T ss_dssp HHHHHH-HTT---CH-------------------------HHHHHHHHHC----CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH-HCC---CH-------------------------HHHHHHHcCC----CHHHHHHHHHHHHHHhCCCccchHHH
Confidence 222221 000 00 6666666532 45678888888888775320 0000
Q ss_pred hhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 001397 154 RFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASR 233 (1086)
Q Consensus 154 ~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~ 233 (1086)
.....++.+..++...+.+....++..|..+...-.. . .... .....++.+ +.+|+.. + ..
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~--~~~~--------~~~~~l~~L----~~lL~~~--d--~~ 272 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP-Q--PDWS--------VVSQALPTL----AKLIYSM--D--TE 272 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS-C--CCHH--------HHGGGHHHH----HHHTTCC--C--HH
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC-C--CcHH--------HHHhHHHHH----HHHHcCC--C--HH
Confidence 0113566667777544455666777777777643211 1 1111 111223332 2223221 1 22
Q ss_pred HHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccC
Q 001397 234 LQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSL 313 (1086)
Q Consensus 234 l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~ 313 (1086)
+...++.++..+.... |.. ...+.+...+..+..+....++.....++.+|..++.
T Consensus 273 v~~~a~~~L~~L~~~~------------------~~~-~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~----- 328 (530)
T 1wa5_B 273 TLVDACWAISYLSDGP------------------QEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT----- 328 (530)
T ss_dssp HHHHHHHHHHHHHSSC------------------HHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHhCCC------------------HHH-HHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc-----
Confidence 3344444443322110 000 1113344566667666554556788889999988874
Q ss_pred CCChHHHHHHHH-HHHHHHHHHHhccccCCCchhHHHHHHHHhhhhh
Q 001397 314 FTNDAARSKFLA-HLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRV 359 (1086)
Q Consensus 314 f~~~~~~~~~l~-~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~ 359 (1086)
.+++.....+. .++..+..++... +.+.-.+.|..+..+..
T Consensus 329 -~~~~~~~~~~~~~~l~~L~~lL~~~----~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 329 -GNDLQTQVVINAGVLPALRLLLSSP----KENIKKEACWTISNITA 370 (530)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHcchHHHHHHHHcCC----CHHHHHHHHHHHHHHHc
Confidence 22222222221 3444455555432 33344456677766654
No 21
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=35.82 E-value=4.1e+02 Score=30.44 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhcc--Cc-----ccHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSV--NT-----DYISQCQFILDNALTPYALMLASSSLLKQV 67 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~--~~-----~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i 67 (1086)
++..++.++..+-+ ++++.|..|-+.+..... .+ +-++.+...+ +.++.++..++..|.+..
T Consensus 8 ~~~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~ 76 (588)
T 1b3u_A 8 SLYPIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFT 76 (588)
T ss_dssp SSHHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCS
T ss_pred CcCcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHH
Confidence 45667777776654 556788888777755321 12 2334444433 557778877777776443
No 22
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=35.00 E-value=5.6e+02 Score=29.23 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=38.6
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Q 001397 116 NYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEM 188 (1086)
Q Consensus 116 ~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~ 188 (1086)
+.++..+.+...+....|+......+..+.+.. ........+++-+..++...+...+..++..|..+...+
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-CHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 444454444434556788888888888887642 111111244555555553333344455556666555443
No 23
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=33.01 E-value=7.4e+02 Score=31.46 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=52.4
Q ss_pred cchHHHHHHHhhhcCCccH-HHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHhccccCC-CchhHHHHHHHHh
Q 001397 278 PSTLQIFFDYYAITEAPLS-KEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLA-DHDNYHEYCRLLG 355 (1086)
Q Consensus 278 ~~~~~~lf~~y~~~~~~~~-~~~l~cL~~l~sl~~s~f~~~~~~~~~l~~~~~~i~~il~~~~~l~-~~~~~~~~c~ll~ 355 (1086)
|.+++.+...|....|..+ ...|.|+.-+..--|..+ .+.-...+..+++.+.+++.. ++. -+|.-.+|-+++.
T Consensus 780 ~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~--~~~~~~il~~vf~~Tl~mi~~--~f~~~Pe~r~~ff~ll~ 855 (1073)
T 3gjx_A 780 PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI--TAEIPQIFDAVFECTLNMINK--DFEEYPEHRTNFFLLLQ 855 (1073)
T ss_dssp HHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGT--GGGHHHHHHHHHHHHHHHHSS--CSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHhC--CcccCcHHHHHHHHHHH
Confidence 3477778888886544433 456666666654434444 345667888888888999974 333 3555556888888
Q ss_pred hhhhhc
Q 001397 356 RFRVNY 361 (1086)
Q Consensus 356 rl~~~~ 361 (1086)
++....
T Consensus 856 ~~~~~~ 861 (1073)
T 3gjx_A 856 AVNSHC 861 (1073)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 887764
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=31.05 E-value=4.4e+02 Score=26.83 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=88.3
Q ss_pred hcCCCHHHHHHHHHHHhh-hc-cCc----------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccC-hhhhhhhh
Q 001397 15 YNSQDSVERAHAENTLKC-FS-VNT----------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLA-LQLRLDIS 81 (1086)
Q Consensus 15 y~~~~~~~r~~ae~~l~~-f~-~~~----------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~-~~~~~~i~ 81 (1086)
..+++-.+|++|-..|.. +. ..+ +-+..+...|.+.+|..+.-.|+.+|..+... +. +.-.....
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~--l~~~~f~~~y~ 102 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK--LKTPGFSKDYV 102 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HCTTTSCHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccccccHHHH
Confidence 356677888888877777 64 211 23445666777788888888888888776543 22 11100010
Q ss_pred hccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChh--hhhHH
Q 001397 82 NSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDR--FRDLV 159 (1086)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~--~~~~i 159 (1086)
.-++.-++++-.+-.+-|++.+..++-.+.+.-=+.... .+.++
T Consensus 103 ----------------------------------~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll 148 (249)
T 2qk1_A 103 ----------------------------------SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDML 148 (249)
T ss_dssp ----------------------------------HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHH
T ss_pred ----------------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHH
Confidence 223333444434444678899988888888865222221 44788
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhcc
Q 001397 160 KESTNFLSQATSDHYAIGLKILNQLVSEMN 189 (1086)
Q Consensus 160 ~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~ 189 (1086)
+++...+.+.++....-.+.+|...+....
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 999888865567777888888888887654
No 25
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=30.63 E-value=8.1e+02 Score=29.79 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=49.0
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHH
Q 001397 901 FRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFY 964 (1086)
Q Consensus 901 yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~~ 964 (1086)
.|+++...|.++..++..++..+.. .+..++..+..++...++++...++.++..++..+
T Consensus 642 ~~~vr~~a~~~l~~l~~~~~~~~~~----~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 642 MPEVRQSSFALLGDLTKACFQHVKP----CIADFMPILGTNLNPEFISVCNNATWAIGEISIQM 701 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 4789999999999999888865543 35567777788888888899999999999998766
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=28.16 E-value=2.1e+02 Score=33.66 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=47.4
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 001397 116 NYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 186 (1086)
Q Consensus 116 ~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~ 186 (1086)
.++..-+.+.-.+..++|+.+.+.++.++.+.+ ++..+...+++.+..++...++....-++..|.++..
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 555555555545667999999999999999854 5554333578888888854444555666666666543
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=25.08 E-value=7e+02 Score=27.18 Aligned_cols=268 Identities=10% Similarity=0.014 Sum_probs=139.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhc---cCc---------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccCh
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFS---VNT---------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLAL 74 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~---~~~---------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~ 74 (1086)
++.+++.+. +++++.|..|-..|..+- .++ +.++....+|....++.++..|+.+|.++... ++
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~---~~ 97 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG---NS 97 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS---CH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC---CH
Confidence 556777664 556778888888887652 222 55777777887776899999999999877653 11
Q ss_pred hhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChh
Q 001397 75 QLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDR 154 (1086)
Q Consensus 75 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~ 154 (1086)
+.+..+. ..| . -..+++.+. +...-++.....++..+....-.....
T Consensus 98 ~~~~~~~-~~~---~-------------------------i~~L~~lL~----~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 98 LQTRIVI-QAG---A-------------------------VPIFIELLS----SEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp HHHHHHH-HTT---H-------------------------HHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH-hCC---C-------------------------HHHHHHHHc----CCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 1111111 000 0 055555443 225678888888888887643100000
Q ss_pred --hhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhH
Q 001397 155 --FRDLVKESTNFLSQ-ATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVA 231 (1086)
Q Consensus 155 --~~~~i~~v~~~~~~-~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~ 231 (1086)
....++.+.+++.. .+.+....++..|..+...-.+.. .. .+....++.+. ..|+.. +
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~--------~~~~~~l~~L~----~~l~~~--~-- 205 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP---EF--------AKVSPCLNVLS----WLLFVS--D-- 205 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC---CG--------GGTGGGHHHHH----HHTTCC--C--
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC---CH--------HHHHHHHHHHH----HHHccC--C--
Confidence 11356667777753 345666777777777764321111 01 01122333332 223211 1
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccc
Q 001397 232 SRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRR 311 (1086)
Q Consensus 232 ~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~ 311 (1086)
..+...++..+..+..... + -+..+.+...++.+..+....++.....++.+|..++.-
T Consensus 206 ~~v~~~a~~~L~~l~~~~~---------~----------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-- 264 (450)
T 2jdq_A 206 TDVLADACWALSYLSDGPN---------D----------KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG-- 264 (450)
T ss_dssp HHHHHHHHHHHHHHTSSSH---------H----------HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHCCCc---------H----------HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC--
Confidence 2233344433333221100 0 011223345666666665545677888999999988852
Q ss_pred cCCCChHHHHHHHH-HHHHHHHHHHhccccCCCchhHHHHHHHHhhhhh
Q 001397 312 SLFTNDAARSKFLA-HLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRV 359 (1086)
Q Consensus 312 s~f~~~~~~~~~l~-~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~ 359 (1086)
+++.+...+. .++..+..++.. .++..-...+..+..+..
T Consensus 265 ----~~~~~~~~~~~~~l~~L~~ll~~----~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 265 ----DDIQTQVILNCSALQSLLHLLSS----PKESIKKEACWTISNITA 305 (450)
T ss_dssp ----CHHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHTT
T ss_pred ----ChHHHHHHHHCccHHHHHHHHcC----CCHHHHHHHHHHHHHHHc
Confidence 2222222221 244445555543 233344456667766654
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=24.44 E-value=8e+02 Score=27.67 Aligned_cols=269 Identities=11% Similarity=0.025 Sum_probs=142.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhccC-c---------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhh
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFSVN-T---------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQL 76 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~~~-~---------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~ 76 (1086)
+..+++.+-.+.++..|..|=..|..+... + +.++.+-.+|.. .++.++..|+.+|.++... +++.
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~---~~~~ 194 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGD---SPKC 194 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHT---CHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCC---Chhh
Confidence 344555554443467788887788777753 2 355656666654 5788888888888776543 1222
Q ss_pred hhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCCh--h
Q 001397 77 RLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD--R 154 (1086)
Q Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~--~ 154 (1086)
|..+. .+| .+ ..+++.+. .+....++...+.++..+.... +... .
T Consensus 195 ~~~i~-~~g---~l-------------------------~~Ll~lL~---~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~ 241 (528)
T 4b8j_A 195 RDLVL-ANG---AL-------------------------LPLLAQLN---EHTKLSMLRNATWTLSNFCRGK-PQPSFEQ 241 (528)
T ss_dssp HHHHH-HTT---CH-------------------------HHHHHTCC---TTCCHHHHHHHHHHHHHHHCSS-SCCCHHH
T ss_pred HHHHH-HCC---cH-------------------------HHHHHHHh---cCCCHHHHHHHHHHHHHHHcCC-CCCcHHH
Confidence 22221 000 00 44444442 2234677888888888888654 3221 1
Q ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 001397 155 FRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRL 234 (1086)
Q Consensus 155 ~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l 234 (1086)
....++.+..++...+.+...-++..|..+... . ....+. -.....++. .+..|+... ..+
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~-----~~~~~~--~~~~g~v~~----Lv~lL~~~~----~~v 302 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDG----T-----NDKIQA--VIEAGVCPR----LVELLLHPS----PSV 302 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----C-----HHHHHH--HHHTTCHHH----HHHHTTCSC----HHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----C-----HHHHHH--HHHcCHHHH----HHHHHcCCC----hhH
Confidence 235667777777555556666677777766521 1 111111 122222222 223333211 235
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhc-CCccHHHHHHHHHHHhcccccC
Q 001397 235 QELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAIT-EAPLSKEALECLVRLASVRRSL 313 (1086)
Q Consensus 235 ~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~-~~~~~~~~l~cL~~l~sl~~s~ 313 (1086)
...++.++-++..-+ ......+.+.+.+..+..+.... ++.+...+..+|..++.
T Consensus 303 ~~~a~~~L~nl~~~~-------------------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~----- 358 (528)
T 4b8j_A 303 LIPALRTVGNIVTGD-------------------DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA----- 358 (528)
T ss_dssp HHHHHHHHHHHTTSC-------------------HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCC-------------------HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC-----
Confidence 556666555543211 11222345667788888777655 67788899999999885
Q ss_pred CCChHHHHHHHH-HHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhh
Q 001397 314 FTNDAARSKFLA-HLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVN 360 (1086)
Q Consensus 314 f~~~~~~~~~l~-~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~ 360 (1086)
.+++.....+. .++..+..++... +.+.-...+..+..+...
T Consensus 359 -~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 359 -GNKDQIQAVINAGIIGPLVNLLQTA----EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp -SCHHHHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHcC
Confidence 12222222221 4555556666542 333334456666655543
No 29
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=23.79 E-value=1.1e+03 Score=29.03 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=19.2
Q ss_pred ChHHHhHHHHHHHHHHHHHHHhh
Q 001397 946 DTNISSQCAAAVDNLAAFYFNNI 968 (1086)
Q Consensus 946 ~~~I~~~~l~~l~~l~~~~~~~~ 968 (1086)
++++...+++.+..++.++....
T Consensus 786 ~pd~~~~~f~ll~~~~~~~~~~~ 808 (963)
T 2x19_B 786 HPDIVDSFMQLLAQALKRKPDLF 808 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CchHHHHHHHHHHHHHHhCcHHH
Confidence 58999999999999998877654
No 30
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=23.60 E-value=6.1e+02 Score=25.98 Aligned_cols=113 Identities=10% Similarity=0.035 Sum_probs=68.3
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHhhcccChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHH
Q 001397 44 QFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLA 123 (1086)
Q Consensus 44 ~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 123 (1086)
+.++ ..+|..++--|+.++..++..-......+.... + ++ ..++..++
T Consensus 61 kk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~----------~----~~-----------------~~~l~~lv 108 (278)
T 4ffb_C 61 AQYI-TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNI----------T----LI-----------------STWTPLLV 108 (278)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHH----------H----HH-----------------HHHHHHHH
T ss_pred HHHh-ccchHHHHHHHHHHHHHHHHHhhhhhcccchhH----------H----HH-----------------HHHHHHHH
Confidence 3444 478888888899988877765111111111111 0 00 45566666
Q ss_pred hcC-CCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCC
Q 001397 124 KRG-PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPN 192 (1086)
Q Consensus 124 ~~~-~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~ 192 (1086)
+++ .+-..-++.....++..++....+.. .+++.+...+.+.++....-.+.+|..++.+|....
T Consensus 109 eK~l~~~k~~~~~~a~~~l~~~~~~~~~~~----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~ 174 (278)
T 4ffb_C 109 EKGLTSSRATTKTQSMSCILSLCGLDTSIT----QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN 174 (278)
T ss_dssp HHTSSCCCHHHHHHHHHHHHHHHHTSSSSH----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhcCcHH----HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc
Confidence 653 23345667777777766665443322 456666666766677888888999999999997544
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=23.45 E-value=3.5e+02 Score=31.97 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=39.6
Q ss_pred CCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 001397 127 PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 186 (1086)
Q Consensus 127 ~~~~~~v~~~l~~~~a~i~K~~w~~~~~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~ 186 (1086)
.+..+||+.+.+.++.++.+.. ++.-+...+++.+.+++...++.-...++.++.++..
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 4567999999999999999954 3321112678888888853344445555555555543
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=22.00 E-value=5.7e+02 Score=25.06 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=124.6
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhhhhhhhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHH
Q 001397 40 ISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLI 119 (1086)
Q Consensus 40 ~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 119 (1086)
++..-..|..+ ++.++..|+.+|.++.... ++.+..+. ..| .+ ..++
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~---~~~~~~~~-~~g---~i-------------------------~~L~ 50 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGP---ASAIKAIV-DAG---GV-------------------------EVLV 50 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC---HHHHHHHH-HTT---HH-------------------------HHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC---cHHHHHHH-HCC---CH-------------------------HHHH
Confidence 45566666544 4889999999998776551 12222221 000 00 5556
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC-h--hhhhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCc
Q 001397 120 NYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-D--RFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLP 196 (1086)
Q Consensus 120 ~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~-~--~~~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~ 196 (1086)
+++.. ...-++...+.++..+.... .+. . .....++.+..++..++++.+..++..|..+... .
T Consensus 51 ~ll~~----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~---- 117 (252)
T 4hxt_A 51 KLLTS----TDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----P---- 117 (252)
T ss_dssp HHTTC----SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS----C----
T ss_pred HHHhC----CCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----C----
Confidence 65532 23678888888888877532 000 0 0113566677777655666777777777777531 1
Q ss_pred hHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCcccccccc
Q 001397 197 STHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLE 276 (1086)
Q Consensus 197 ~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~ 276 (1086)
..+++.. .+...++. .++.|+.. ...+...++.++.++...+ ...+..+.
T Consensus 118 -~~~~~~~--~~~~~i~~----L~~~l~~~----~~~~~~~a~~~L~~l~~~~-------------------~~~~~~~~ 167 (252)
T 4hxt_A 118 -DEAIKAI--VDAGGVEV----LVKLLTST----DSEVQKEAARALANIASGP-------------------DEAIKAIV 167 (252)
T ss_dssp -HHHHHHH--HHTTHHHH----HHHHTTCS----CHHHHHHHHHHHHHHTTSC-------------------HHHHHHHH
T ss_pred -HHHHHHH--HHCCCHHH----HHHHHcCC----CHHHHHHHHHHHHHHHcCC-------------------HHHHHHHH
Confidence 1122221 22222332 23333321 1235556666555543211 11122355
Q ss_pred CcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCCCChHHHHHHHH-HHHHHHHHHHhccccCCCchhHHHHHHHHh
Q 001397 277 DPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLA-HLMTGTKEILQTGQGLADHDNYHEYCRLLG 355 (1086)
Q Consensus 277 ~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f~~~~~~~~~l~-~~~~~i~~il~~~~~l~~~~~~~~~c~ll~ 355 (1086)
+.+.++.+..+....++.....++.+|..++. .+++.+..... ..+..+..++.. .+++.-...+..+.
T Consensus 168 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~~~l~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS------GPTSAIKAIVDAGGVEVLQKLLTS----TDSEVQKEAQRALE 237 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SBHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc------CCHHHHHHHHHCCCHHHHHHHHCC----CcHHHHHHHHHHHH
Confidence 56788888888775667889999999999985 12222222221 244444444442 23333344666777
Q ss_pred hhhhhc
Q 001397 356 RFRVNY 361 (1086)
Q Consensus 356 rl~~~~ 361 (1086)
.+....
T Consensus 238 ~l~~~~ 243 (252)
T 4hxt_A 238 NIKSGG 243 (252)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 666554
No 33
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=21.02 E-value=1.2e+03 Score=28.66 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=46.7
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHH
Q 001397 901 FRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAA 962 (1086)
Q Consensus 901 yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~ 962 (1086)
+|.++......+..+++. ++++.+..++..+..++.+.+..|...++.++..++.
T Consensus 471 ~p~vr~~a~~~lg~~~~~-------~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQ-------LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHHHHHHTGGG-------SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CceehHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 899999999888777664 3678899999999999998888888999999888765
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=20.87 E-value=5.5e+02 Score=24.50 Aligned_cols=137 Identities=14% Similarity=0.063 Sum_probs=80.8
Q ss_pred HHhcCCCHHHHHHHHHHHhhhcc-Cc---------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHhhcccChhhhhhhhh
Q 001397 13 RLYNSQDSVERAHAENTLKCFSV-NT---------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDISN 82 (1086)
Q Consensus 13 ~~y~~~~~~~r~~ae~~l~~f~~-~~---------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~~~l~~~~~~~i~~ 82 (1086)
.+..+++++.|..|=..|..+.. ++ +.++..-.+|.. .++.++-.|+.+|.++... .++.+..+.
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~---~~~~~~~i~- 93 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASG---GNEQIQAVI- 93 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS---CHHHHHHHH-
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC---CcHHHHHHH-
Confidence 44456677788888888888774 33 345556666654 4788888898888776432 122222222
Q ss_pred ccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChh--hhhHHH
Q 001397 83 SCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDR--FRDLVK 160 (1086)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~~--~~~~i~ 160 (1086)
..| .+ ..+++++.. ...-++...+.++..+....=..... ....++
T Consensus 94 ~~g---~i-------------------------~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 141 (210)
T 4db6_A 94 DAG---AL-------------------------PALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141 (210)
T ss_dssp HTT---CH-------------------------HHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HCC---CH-------------------------HHHHHHHcC----CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHH
Confidence 000 00 556665532 24678888888888887521000000 124566
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHH
Q 001397 161 ESTNFLSQATSDHYAIGLKILNQLVS 186 (1086)
Q Consensus 161 ~v~~~~~~~~~~~~~~gl~ll~~lv~ 186 (1086)
.+.+++..++.+.+..++..|.++..
T Consensus 142 ~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 142 ALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 77777765556677777777777763
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=20.49 E-value=4.2e+02 Score=30.25 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhc---cCc--------ccHHHHHHHHhhCCChHHHHHHHHHHHHHHh
Q 001397 7 LEALCERLYNSQDSVERAHAENTLKCFS---VNT--------DYISQCQFILDNALTPYALMLASSSLLKQVT 68 (1086)
Q Consensus 7 le~~~~~~y~~~~~~~r~~ae~~l~~f~---~~~--------~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~ 68 (1086)
+|.+++.+.+ .|.+.+.+|-+.+..+- ++| +.++.+-.+|..+.++.+++.|+.+|.++-.
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 6788877764 55666766666666543 233 2477888899999999999999999987643
Done!