BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001398
(1085 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 223/1156 (19%), Positives = 441/1156 (38%), Gaps = 163/1156 (14%)
Query: 14 VRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNXXXXXXXXXXXXXXX 73
++RE W ++ L +LS +G Q ELV +L L ED+
Sbjct: 124 IKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183
Query: 74 TQXXXXXXXXXXXXXXRHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL 133
+ Q A+ + A LN + Y +W + +
Sbjct: 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243
Query: 134 AKYGI--IHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEF----ESAMHDVFQIL 187
+ LL+ + +L A E + RKG + + AMH +
Sbjct: 244 TAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAA 303
Query: 188 MKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTI-----LSMYL 242
G G + E + F + +C+ + +LG + + + YL
Sbjct: 304 QTADG----------GGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYL 353
Query: 243 QQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKM 302
+ L + H L + + W AL R ++ SR
Sbjct: 354 ESFLAFTTHPSQFLRSSTQMTWGALFRH-------------------------EILSRDP 388
Query: 303 RILSFLNDDISGAILDISFQRLVKREKAPGTQGP-LELWSDDFEGKGDFSQY----RSRL 357
+L+ I L S LVK T P E DF+ DF+ + R++
Sbjct: 389 LLLA-----IIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQ 443
Query: 358 LELVKFVASNKPLVAGVKVSERVMAIINSLL-----------------ISTMPAQDLAVM 400
E+++ P + E + +++ L + ++ +
Sbjct: 444 GEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW 503
Query: 401 ESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG--LLRQLLSLKWTEPPLVVALG 458
E+M LE+V++ +F N+ E+ ++ +G LL+ +L+ +P ++ +
Sbjct: 504 EAMTLFLESVITQMFRTLNR-----EEIPVN-----DGIELLQMVLNFDTKDPLILSCVL 553
Query: 459 HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF----KDPSTNSARHARLQICTSFIR 514
+ AL PF+ Y P+ + V SKLF +S+ F K P T + R+ R C+S I+
Sbjct: 554 TNVSALFPFVTYRPEFLPQVFSKLF---SSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610
Query: 515 IAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEV-LA 572
+ + + +LP+ + + + L E L + E L EA +++++ ++Q+V L
Sbjct: 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLE 670
Query: 573 WLLEPLSQQWMQLEWQ--------------------NNYLSEPLGLVRLCSDTSFMWSLF 612
L+ P++ W+ + + L +P GL R + ++
Sbjct: 671 ELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNR----ARMSFCVY 726
Query: 613 HTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMXXXXXXXXRAIHSI 669
+ +R + + +A + +S+ N +P + + R +++
Sbjct: 727 SILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTL 786
Query: 670 WSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNE 729
++P + + A+ M DAE+ ++LG P + D T E
Sbjct: 787 YAPEMLAKMAEPFTKALDMLDAEKSAILGLPQP-----LLELNDSPVFKTVLE------- 834
Query: 730 SDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLD-SGSVVVALMENIQSMEFRHIRQLVH 787
++ + + ++ +++LG + ++ F+ D + ++ + N+ ++ +R ++
Sbjct: 835 -RMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLR 893
Query: 788 SVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE--VAGSDLKV------ 839
+ +V FCP + +E + +L PLF + LS W + + G D
Sbjct: 894 VFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPES 953
Query: 840 -EVMEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQSGHFYRVDVLSLKDLDAFAS 895
E++EE+L+R LTRE+ L++ S ++ PP + ++ A A
Sbjct: 954 QEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVT---PSAMAE 1010
Query: 896 NSMVG-FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 954
+ +G L+KH+D+ L + + W D + + +S +L + S + L V
Sbjct: 1011 LTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAV 1069
Query: 955 SKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLA 1013
+ LF+++++GL + + A LV L +I+ + R R V+ +P I L
Sbjct: 1070 TW-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQ 1128
Query: 1014 FE-----DALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNA 1068
F+ +L K A R + Q R L+ G +K V+ I N+ + + +
Sbjct: 1129 FDCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQFRKEVH-IKNLPSLFKKTKPM 1185
Query: 1069 PESRTEEGESIGLAAI 1084
E+ + + GLA I
Sbjct: 1186 LETEVLDNDGGGLATI 1201
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 299 SRKMRILSFLNDDISGAILDISFQRLVKREKAP-GTQGPLELWSDDFEGKGDFSQYRSRL 357
SR + ++ D A++++S+ ++ +K P G GPL ++D
Sbjct: 61 SRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKGVIGPL--IAED-------------- 104
Query: 358 LELVKFVASNKPLVAG----VKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSA 413
++ ++ +A+ P+V +K+ V + + + T +D +++ + SA
Sbjct: 105 IQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDSKEDRMLIQCYMY----LASA 160
Query: 414 VFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTE--PPLVVALGHYLDALGPFLKYY 471
SN + + L S +FE L ++ + + + V D PF++Y+
Sbjct: 161 AHPESNHYS-----LPLKFSPVFECLTKKFVRMDYLPGGADETVTETQAWDEF-PFVEYH 214
Query: 472 PDAVGGVISKLFELLTSLPFVFKDPSTNSARH 503
PD G I L L+ P + PS N H
Sbjct: 215 PDLNGETIVPLKPLIVQQP---EGPSFNVDGH 243
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 842 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 894
+EE++ D+T S L A GLN ++ G+ + ++ L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTSRKDKKDVLAILKGNQFTINTTGLTDFSSIA 206
Query: 895 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 954
SN +GFLL D A+P ++ + +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTME--------------SGRGNFLSAATDLAI--------QFL 242
Query: 955 SKD 957
SKD
Sbjct: 243 SKD 245
>pdb|2W5X|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site.
pdb|2W5X|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site
Length = 375
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 842 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 894
+EE++ D+T S L A GLN ++ G+ + ++ +L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIA 206
Query: 895 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 954
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTMEKGR--------------GNFLSAATDLAI--------QFL 242
Query: 955 SKD 957
SKD
Sbjct: 243 SKD 245
>pdb|2W5V|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5V|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5W|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site.
pdb|2W5W|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site
Length = 375
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 842 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 894
+EE++ D+T S L A GLN ++ G+ + ++ +L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIA 206
Query: 895 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 954
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTMEKGR--------------GNFLSAATDLAI--------QFL 242
Query: 955 SKD 957
SKD
Sbjct: 243 SKD 245
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 34/123 (27%)
Query: 842 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 894
+EE++ D+T S L A GLN + G+ + ++ L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTSRSDSKDVLAILKGNQFTINTTGLTDFSSIA 206
Query: 895 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 954
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTME--------------KGRGNFLSAATDLAI--------QFL 242
Query: 955 SKD 957
SKD
Sbjct: 243 SKD 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,883,448
Number of Sequences: 62578
Number of extensions: 1111446
Number of successful extensions: 2602
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2594
Number of HSP's gapped (non-prelim): 11
length of query: 1085
length of database: 14,973,337
effective HSP length: 109
effective length of query: 976
effective length of database: 8,152,335
effective search space: 7956678960
effective search space used: 7956678960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)