Query 001398
Match_columns 1085
No_of_seqs 218 out of 459
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 23:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5101 CRM1 Importin beta-rel 100.0 4.6E-61 9.9E-66 533.6 35.2 533 3-588 115-677 (1053)
2 KOG2020 Nuclear transport rece 100.0 2.7E-51 5.8E-56 502.4 44.6 870 3-1062 113-1032(1041)
3 KOG2021 Nuclear mRNA export fa 100.0 3.1E-38 6.7E-43 359.4 58.5 497 3-581 107-640 (980)
4 KOG2023 Nuclear transport rece 99.9 4.1E-25 8.9E-30 250.0 27.7 473 6-624 110-595 (885)
5 PF08389 Xpo1: Exportin 1-like 99.8 8.3E-20 1.8E-24 183.8 12.1 143 3-159 5-148 (148)
6 KOG2022 Nuclear transport rece 99.8 3.9E-12 8.5E-17 150.4 63.1 501 4-582 104-641 (982)
7 KOG2081 Nuclear transport regu 99.6 3E-12 6.4E-17 146.2 36.3 455 21-580 95-556 (559)
8 KOG2171 Karyopherin (importin) 99.4 2.7E-08 5.9E-13 122.4 53.2 309 4-466 98-418 (1075)
9 KOG1241 Karyopherin (importin) 99.0 3.6E-07 7.8E-12 107.6 29.6 396 5-560 109-530 (859)
10 COG5215 KAP95 Karyopherin (imp 98.3 0.00061 1.3E-08 78.5 28.7 393 5-560 113-529 (858)
11 KOG1991 Nuclear transport rece 98.3 0.00063 1.4E-08 83.4 30.0 418 6-535 109-553 (1010)
12 KOG1992 Nuclear export recepto 97.9 0.16 3.4E-06 62.0 38.6 50 511-560 571-623 (960)
13 KOG2274 Predicted importin 9 [ 97.3 0.7 1.5E-05 57.2 33.5 98 449-560 462-559 (1005)
14 KOG1993 Nuclear transport rece 97.1 0.64 1.4E-05 56.7 30.9 270 304-605 362-649 (978)
15 KOG1410 Nuclear transport rece 96.8 1.8 3.9E-05 51.9 54.4 246 6-270 104-385 (1082)
16 KOG2171 Karyopherin (importin) 96.8 1.2 2.6E-05 56.7 31.0 92 73-183 383-479 (1075)
17 KOG2023 Nuclear transport rece 96.4 0.97 2.1E-05 54.2 24.9 102 146-270 185-286 (885)
18 PF08506 Cse1: Cse1; InterPro 94.1 2.1 4.6E-05 49.7 17.7 167 311-486 183-355 (370)
19 PF12717 Cnd1: non-SMC mitotic 91.7 3.1 6.7E-05 43.2 13.3 119 447-582 35-159 (178)
20 KOG1241 Karyopherin (importin) 89.1 27 0.00058 43.2 19.3 202 351-580 515-730 (859)
21 PF12755 Vac14_Fab1_bd: Vacuol 88.8 1.8 4E-05 40.0 7.7 38 502-539 41-78 (97)
22 PTZ00429 beta-adaptin; Provisi 88.0 90 0.0019 39.9 34.6 161 352-556 383-544 (746)
23 PF08767 CRM1_C: CRM1 C termin 87.5 39 0.00084 38.6 19.0 132 908-1039 162-315 (319)
24 KOG0213 Splicing factor 3b, su 86.6 94 0.002 38.6 33.4 83 434-530 759-845 (1172)
25 PF03378 CAS_CSE1: CAS/CSE pro 83.5 19 0.00041 43.0 14.4 78 472-560 21-101 (435)
26 PF08767 CRM1_C: CRM1 C termin 77.4 22 0.00049 40.5 12.0 154 104-271 34-196 (319)
27 KOG1059 Vesicle coat complex A 77.4 1.1E+02 0.0023 38.1 17.5 140 461-669 130-271 (877)
28 PF10508 Proteasom_PSMB: Prote 73.9 2.2E+02 0.0048 34.8 31.8 144 438-606 290-442 (503)
29 KOG2020 Nuclear transport rece 65.8 1.9E+02 0.004 38.3 17.3 132 449-580 57-189 (1041)
30 PF08506 Cse1: Cse1; InterPro 64.4 1.1E+02 0.0023 35.8 13.8 101 500-602 108-218 (370)
31 PF02985 HEAT: HEAT repeat; I 63.5 8.7 0.00019 27.2 3.0 27 138-164 1-29 (31)
32 KOG1824 TATA-binding protein-i 62.8 4.5E+02 0.0097 34.1 44.8 194 113-368 149-363 (1233)
33 KOG0915 Uncharacterized conser 61.0 5.9E+02 0.013 34.9 20.4 55 474-534 1123-1177(1702)
34 PF11935 DUF3453: Domain of un 60.4 74 0.0016 34.7 10.9 103 431-535 107-210 (239)
35 KOG1059 Vesicle coat complex A 58.4 4.7E+02 0.01 32.9 24.0 143 6-166 201-367 (877)
36 PF14911 MMS22L_C: S-phase gen 54.9 4E+02 0.0087 31.1 17.1 102 935-1036 258-370 (373)
37 PF05327 RRN3: RNA polymerase 53.8 2.5E+02 0.0055 34.8 15.4 137 436-580 71-212 (563)
38 COG5181 HSH155 U2 snRNP splice 49.6 3.6E+02 0.0078 33.1 14.5 83 434-530 564-650 (975)
39 COG5657 CSE1 CAS/CSE protein i 49.4 70 0.0015 40.7 9.2 105 7-126 106-212 (947)
40 PF08167 RIX1: rRNA processing 48.0 3.2E+02 0.0069 27.8 14.5 137 370-536 20-162 (165)
41 PF08623 TIP120: TATA-binding 47.5 79 0.0017 32.5 7.9 104 738-861 42-145 (169)
42 KOG2021 Nuclear mRNA export fa 46.8 2.3E+02 0.005 35.6 12.6 130 434-580 640-783 (980)
43 cd05167 PI4Kc_III_alpha Phosph 46.4 75 0.0016 36.1 8.3 69 973-1041 221-294 (311)
44 PF12460 MMS19_C: RNAPII trans 41.0 3.6E+02 0.0078 32.0 13.5 130 125-270 254-395 (415)
45 COG5656 SXM1 Importin, protein 39.4 9.1E+02 0.02 30.7 32.0 54 359-412 392-445 (970)
46 PF01602 Adaptin_N: Adaptin N 37.0 8.3E+02 0.018 29.5 34.5 165 352-556 355-522 (526)
47 PF10521 DUF2454: Protein of u 35.7 3.6E+02 0.0077 30.1 11.7 145 73-252 113-277 (282)
48 PF13513 HEAT_EZ: HEAT-like re 34.7 24 0.00051 28.5 1.6 38 503-540 2-39 (55)
49 PF13513 HEAT_EZ: HEAT-like re 30.5 64 0.0014 25.9 3.5 51 451-515 1-55 (55)
50 PF08064 UME: UME (NUC010) dom 29.0 3.5E+02 0.0077 25.4 8.7 70 460-538 35-105 (107)
51 cd00893 PI4Kc_III Phosphoinosi 28.6 2E+02 0.0042 32.4 8.0 68 974-1041 200-272 (289)
52 cd05166 PI3Kc_II Phosphoinosit 28.5 1.8E+02 0.004 33.6 8.0 69 973-1041 265-339 (353)
53 cd05174 PI3Kc_IA_delta Phospho 26.2 2.2E+02 0.0048 33.0 8.0 74 972-1045 271-350 (361)
54 KOG0212 Uncharacterized conser 26.1 1.3E+03 0.028 28.4 16.6 233 10-270 111-365 (675)
55 KOG1058 Vesicle coat complex C 23.9 1.6E+03 0.035 28.7 18.8 92 237-383 314-405 (948)
56 PF14225 MOR2-PAG1_C: Cell mor 23.5 2.3E+02 0.0051 31.3 7.3 57 112-169 203-259 (262)
57 PF14664 RICTOR_N: Rapamycin-i 23.3 1.2E+03 0.027 27.1 16.6 240 10-270 7-270 (371)
58 cd05168 PI4Kc_III_beta Phospho 23.3 3.7E+02 0.008 30.3 8.9 69 973-1041 200-276 (293)
59 PF13251 DUF4042: Domain of un 23.1 1.5E+02 0.0032 31.0 5.3 57 110-167 115-177 (182)
60 PF12755 Vac14_Fab1_bd: Vacuol 22.9 3.2E+02 0.007 25.2 7.0 23 567-589 21-43 (97)
61 PF12460 MMS19_C: RNAPII trans 22.3 4.6E+02 0.01 31.0 10.1 54 113-166 339-396 (415)
62 KOG0212 Uncharacterized conser 21.6 7.9E+02 0.017 30.1 11.2 203 396-625 13-242 (675)
63 KOG1020 Sister chromatid cohes 21.3 2.3E+03 0.05 29.6 32.5 72 453-531 1188-1269(1692)
64 PF12717 Cnd1: non-SMC mitotic 21.2 8.9E+02 0.019 24.7 11.5 138 895-1042 9-159 (178)
65 PF00220 Hormone_4: Neurohypop 21.2 37 0.0008 17.3 0.2 7 793-799 2-8 (9)
66 KOG2956 CLIP-associating prote 21.1 5.2E+02 0.011 30.9 9.5 138 18-165 323-478 (516)
67 smart00802 UME Domain in UVSB 21.0 6E+02 0.013 24.0 8.5 67 461-536 36-103 (107)
No 1
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.6e-61 Score=533.61 Aligned_cols=533 Identities=16% Similarity=0.194 Sum_probs=430.8
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccCC-chHHHHHHHHHHHHhhhhhHH
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNED-LEGDRRRLLLRGLTQSLPEIL 81 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~d-l~~~rr~~L~~~L~~~~p~I~ 81 (1085)
.||++.++|+|+|+|||++||+|+|||++.++.|...||++|.||++|+||||+|.++ +++.|++.|++.|+.++|+||
T Consensus 115 lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF 194 (1053)
T COG5101 115 LNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIF 194 (1053)
T ss_pred HHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4899999999999999999999999999999999999999999999999999998765 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHH-HhhcCChhhhhHHHHHHH
Q 001398 82 PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHACEFFK 160 (1085)
Q Consensus 82 ~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~r~~A~ecL~ 160 (1085)
.+|.++||..- ..+++.|||.++..|++|||+.+|+++++++++ -++.+.|++|..+++||+
T Consensus 195 ~lc~qiLE~~~-----------------~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLt 257 (1053)
T COG5101 195 GLCKQILEYSR-----------------DESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFNSMPDTRVATLSCLT 257 (1053)
T ss_pred HHHHHHHHhcC-----------------ChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 99999999542 247999999999999999999999999999998 489999999999999999
Q ss_pred HHcCCCCCCCCChH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccc
Q 001398 161 LVSPRKGPADASAS-------EFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAR 233 (1085)
Q Consensus 161 ~i~sRk~~~~~~~~-------lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~ 233 (1085)
+|++.++.|.+..+ +|+.++..+....+-...+++.- -++.+..+..|..+++++++++-..+...+++
T Consensus 258 Ei~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~----Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~ 333 (1053)
T COG5101 258 EIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEV----YGGMDKNEQIFVQKLAQFLSSLYEVYISLLEA 333 (1053)
T ss_pred HHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHH----HcccChhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999865533211 34443332211101011122221 13446667789999999999999989888876
Q ss_pred ccc--cHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhc--ccccCCCCCcccCCCCCCC---Ccchhhhhhhh
Q 001398 234 EDT--ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTK--VAHSTGDGSTVNNADSGSG---KVDSRKMRILS 306 (1085)
Q Consensus 234 ~~~--~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~--~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~ 306 (1085)
++. ++-.-...++.+.+...-.+++.|+++|+.+..+++++.+ .+..|++......|+..-+ +.+..+ ..+.
T Consensus 334 ~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~-pLrk 412 (1053)
T COG5101 334 REMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTK-PLRK 412 (1053)
T ss_pred hhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhccc-chHH
Confidence 432 4445567788899999999999999999999999877754 3445666555444432111 111112 2567
Q ss_pred cchhhhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 001398 307 FLNDDISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAII 384 (1085)
Q Consensus 307 ~~~~~i~~~Ll~v~~~km~~~~~~~--~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l 384 (1085)
++|.+++++|+-+++++|+|||++. ++++ +|..+ +|-.++|-.+++|.+++++.+++++.-.++..++.+++..++
T Consensus 413 hiY~~ilsqLrlvlienMvrPEEVliVende-gEivR-efvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~ 490 (1053)
T COG5101 413 HIYIGILSQLRLVLIENMVRPEEVLIVENDE-GEIVR-EFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQL 490 (1053)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEEEECCC-cHHHH-HHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence 8899999999999999999999974 3333 67777 888888889999999999999999999999999999999999
Q ss_pred hhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChh--HHHHHHHHHH
Q 001398 385 NSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPP--LVVALGHYLD 462 (1085)
Q Consensus 385 ~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~--l~s~~l~~l~ 462 (1085)
++. .|.|..++++|||+.+ ++|. +. ++.| +.+++.++..||.+|....++|+. +.|++|++++
T Consensus 491 dg~---------EWsw~nlNtLcWAIGS--ISGa--ms-E~~E-krF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG 555 (1053)
T COG5101 491 DGK---------EWSWNNLNTLCWAIGS--ISGA--MS-EVNE-KRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG 555 (1053)
T ss_pred cCC---------ccchhhHhHHHHHHhc--ccch--hh-hHHH-HHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence 864 7899999999999955 2221 22 1234 489999999999999999999884 7799999999
Q ss_pred hhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc--------cCccchHHHHHHHHH
Q 001398 463 ALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS--------DKSILPHMKDIADTM 534 (1085)
Q Consensus 463 ~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~--------~~~l~P~~~~i~~~i 534 (1085)
+|+||+++||.|+++|+.|+||+|++... .|+.|||++|+||++++ ++.-.||+..|+..+
T Consensus 556 QYpRFLkahw~FLkTVv~KLFEFMhE~HE-----------GvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl 624 (1053)
T COG5101 556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHE-----------GVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNL 624 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhh
Confidence 99999999999999999999999985322 36669999999999997 455688888874444
Q ss_pred HHHHHc-cccchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhChHhHH
Q 001398 535 AYLQRE-GRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQ 588 (1085)
Q Consensus 535 ~~l~~~-~~L~~~e~~~L~Eal~~iss-~~~~~~q~~~l~~ll~P~~~~W~~~~~~ 588 (1085)
... |+|.+.++.++|||++.+++ ......+..++-.+|+-+++.|..-..+
T Consensus 625 ---~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~q 677 (1053)
T COG5101 625 ---PKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQ 677 (1053)
T ss_pred ---hhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444 68999999999999999998 4445578889999999999999744433
No 2
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-51 Score=502.37 Aligned_cols=870 Identities=14% Similarity=0.139 Sum_probs=588.5
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHH-HhhhhhHH
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGL-TQSLPEIL 81 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L-~~~~p~I~ 81 (1085)
++|++.++|||+|||||+.||+|++++.+.++.|+++||++|.||++|+||||+|.+..-.+||..+++.+ +..+..|+
T Consensus 113 ~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~ 192 (1041)
T KOG2020|consen 113 LNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIF 192 (1041)
T ss_pred HHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999965444456666666654 44588888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHH-HhhcCChhhhhHHHHHHH
Q 001398 82 PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHACEFFK 160 (1085)
Q Consensus 82 ~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~r~~A~ecL~ 160 (1085)
.+|..+.++. +.+++.++|.+++.|++|||+++|++.++++++ +.+++.+.+|..|++||.
T Consensus 193 ~l~~~~~~~a------------------~~~~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ 254 (1041)
T KOG2020|consen 193 TLCSYIKEKA------------------NSELLSATLETLLRFLEWIPLGYIFETNILELLLNKFLNAPELRNNALSCLT 254 (1041)
T ss_pred HHHHHHHhhh------------------hhHHHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhccchHHHHHHHHHHHH
Confidence 8888766533 234999999999999999999999988878876 699999999999999999
Q ss_pred HHcCCCCCCCCCh--HHHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccccc
Q 001398 161 LVSPRKGPADASA--SEFESAMHD---VFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARED 235 (1085)
Q Consensus 161 ~i~sRk~~~~~~~--~lf~~~l~~---i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~ 235 (1085)
++++|++...++. +.|+..+.. ++.. ++.. +.|. .....|+ |.|++++++++++|+..++..++.+.
T Consensus 255 ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~-l~~~-~~~~-----~~~~~dq-~~fi~~l~~~l~~f~~~~~~lle~~~ 326 (1041)
T KOG2020|consen 255 ELLSRKRSIYERKTVPMFNLTIYQLRSIPQD-LDIP-EVYS-----SLSDEDQ-DSFIEKLAQFLSLFFEQHIALLESSL 326 (1041)
T ss_pred HHHhccccchhHHhHHHHHHHHHHHHHhhhh-hchh-hhhh-----cccHhHH-HHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 9999997532322 455544444 2211 1111 2222 1222333 79999999999999999999888732
Q ss_pred ----ccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhh-hc-ccccCCCCCcccCCCCCC-CCcchhhhhhhhcc
Q 001398 236 ----TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSK-TK-VAHSTGDGSTVNNADSGS-GKVDSRKMRILSFL 308 (1085)
Q Consensus 236 ----~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~-~~-~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~ 308 (1085)
.....++.+++.++.||+...+. |+++|+.++++.+.. ++ .+.+++ +|+..+ +..+ .+...
T Consensus 327 ~~~~~~~~~~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~~~ll~~s~~------~~~~~~~~ri~-----~rk~~ 394 (1041)
T KOG2020|consen 327 SQRPVLLEALLELILISTIEPSEIFKI-CLDYWNKLVADLYYNKPPLLQLSTT------LPSISDYSRID-----FRKSI 394 (1041)
T ss_pred hhhhHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHhhhcccccccccccc------cccccchhccc-----hHHHH
Confidence 35667888889999999988888 999999999996554 33 222221 222111 1111 22345
Q ss_pred hhhhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhh
Q 001398 309 NDDISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINS 386 (1085)
Q Consensus 309 ~~~i~~~Ll~v~~~km~~~~~~~--~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~ 386 (1085)
|..++.+++.+...+|++|+++. +++. ++..+ |+-.+.+|..|++.+++...+.+.++-.++-..+..++...+++
T Consensus 395 y~~~~~~~r~l~l~~m~~Pe~vlive~~~-~~~vr-e~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~~ 472 (1041)
T KOG2020|consen 395 YQEFLSKLRLLRLERMAKPEEVLIVENEQ-GEIVR-EFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLDG 472 (1041)
T ss_pred HHHHHHHHHHHHHHHhcCchheeEEechH-HHHHH-HhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhhH
Confidence 67999999999999999999864 2321 34444 66668889999999999999999999999999999998888875
Q ss_pred cccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCh--hHHHHHHHHHHhh
Q 001398 387 LLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGHYLDAL 464 (1085)
Q Consensus 387 ~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp--~l~s~~l~~l~~l 464 (1085)
. .+.|++...+|+|+.+..-+ +- .+.+ ...+..++.++++.+.+...+|+ .+.+++++.++++
T Consensus 473 ~---------~~~~~~ln~l~~ai~sisg~----~~-e~~e-~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~ 537 (1041)
T KOG2020|consen 473 D---------EWSLHNLNRLCWAIGSISGR----ML-EDME-KKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQY 537 (1041)
T ss_pred H---------HHhhhhhhhHHHHHHHHHhh----hH-HHHH-HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhccc
Confidence 3 89999999999999753211 11 1223 37888999999999998888875 4889999999999
Q ss_pred hhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc--------cCccchHHHHHHHHHHH
Q 001398 465 GPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS--------DKSILPHMKDIADTMAY 536 (1085)
Q Consensus 465 ~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~--------~~~l~P~~~~i~~~i~~ 536 (1085)
++|++.||.+++++..|+|+++++... .++.|||++|++|..++ +....||...+..-+..
T Consensus 538 p~Fl~~h~~~Lkt~~~~L~efmhe~h~-----------gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~ 606 (1041)
T KOG2020|consen 538 PRFLKAHWKFLKTVVHKLFEFMHETHE-----------GVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTA 606 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhH-----------HHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccc
Confidence 999999999999999999999985322 25669999999999996 44577777776433332
Q ss_pred HHHccccchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHHhccCccchhhhHHHH
Q 001398 537 LQREGRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTV 615 (1085)
Q Consensus 537 l~~~~~L~~~e~~~L~Eal~~iss-~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~g~~~~~~~~~~~v 615 (1085)
. .+.+.+.++..+|||++.++. ..+++.+.+..+..+.-...+|.+..+++ .-. .+++.+.+..|++
T Consensus 607 i--~~~l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~-~~~-----~~~l~~~~~v~s~---- 674 (1041)
T KOG2020|consen 607 I--TEDLQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQA-RCN-----DEILKLLETVKSL---- 674 (1041)
T ss_pred h--hcCchHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcC-ccc-----HHhhcchHHHHHH----
Confidence 2 257999999999999996555 77888888888888887777887666553 100 0000000001111
Q ss_pred HHHHHHhhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhccCccccccCcHHHHHHcccC-HHHHh
Q 001398 616 TFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMS-DAEQF 694 (1085)
Q Consensus 616 ~~~~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLP~ll~Llr~~h~l~~P~~~~~l~~~~~~~~~~~-~~Er~ 694 (1085)
+ .+++..-+.++.+.+.+.|..+.-.+..++-....+ ..+++
T Consensus 675 ------------------------------------~-~i~~~~~~~~~sl~~~f~~~~~~~~~d~~~l~~~~s~~v~~~ 717 (1041)
T KOG2020|consen 675 ------------------------------------L-NILKTNSRALTSLGSTFVPQLGKIYLDMLQLYIKQSELVSIN 717 (1041)
T ss_pred ------------------------------------H-HHHHhHHHHHHhcCcccccccccccHHHHHHHHHhcccccHH
Confidence 1 144444444455555555544433332222222222 22233
Q ss_pred hhcCCCCCCcccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchH-HHHHHhc
Q 001398 695 SLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGS-VVVALME 772 (1085)
Q Consensus 695 ~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~~~-~l~~~fy~~~~l~~-l~~al~~ 772 (1085)
+--|. ..+....++++|..-.||.|+.+-|..+ ..+.+||.....+. +-..+|.
T Consensus 718 ~~~~~------------------------~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 773 (1041)
T KOG2020|consen 718 VTAGG------------------------SEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFD 773 (1041)
T ss_pred Hhccc------------------------ccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHH
Confidence 21111 1244556899999999999999999999 88999999988888 6778899
Q ss_pred CCCCCccccHHHHHHH--HHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHH
Q 001398 773 NIQSMEFRHIRQLVHS--VLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDL 850 (1085)
Q Consensus 773 ~~~~l~~~~lr~ll~~--~~~plv~~CP~~~~~~~l~plL~~l~~~~~~rL~~~W~~i~~~~~~~~~~~E~~eE~llr~L 850 (1085)
....+|+.+.+.+++. +++| ...++++.-++..+.+... .. -+......+|+.|++.-+.+
T Consensus 774 ~~~nvPd~r~~~vl~l~~~iv~--------~Lg~~i~~~~~~i~~~v~~---c~------l~m~~~d~qe~~e~~~~f~~ 836 (1041)
T KOG2020|consen 774 YLDNVPDYRENEVLSLNATIVP--------KLGEFIPAELPLINIAVLE---CT------LEMINKDFQEYPEHRLNFLL 836 (1041)
T ss_pred HHccCcchhcchHHHhhhhhhh--------hhhhHhhhhccHHHHHHHh---hh------hhccccccccchHHHHHHHH
Confidence 9999999999998852 2222 2222222222211111111 00 02345677899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCccc-------ccccccccchhhhhhhhHHHHhcCcC-----chHHHHHHHHh
Q 001398 851 TREICSLLSTMASSGLNNGIPPIEQSGHFYR-------VDVLSLKDLDAFASNSMVGFLLKHKD-----LALPALQISLE 918 (1085)
Q Consensus 851 Tr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~l~~~~~ 918 (1085)
++++..+.-..+..+. +. .+.+.+.. +.|......+-.....+.+.+-..+. ....+..+|.+
T Consensus 837 lle~l~~~~~~~~~~l--~~---~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~~~~~~~~~~~~~~~l~~ 911 (1041)
T KOG2020|consen 837 LLEALLLFCFPAFSEL--PA---DQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEMEKFANAFYQTYFLSLLQK 911 (1041)
T ss_pred HHHHHHHhhhHHHHcC--Cc---hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999998844444332 11 11111100 11111111111122344444443332 33455666666
Q ss_pred hhcccchhhhHHHHHhHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCCCCchHHH
Q 001398 919 AFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQ 998 (1085)
Q Consensus 919 ~l~w~Dt~~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~~~~~~~~ 998 (1085)
++.|-+-.+ +...||.....+..... +-+... ++.++..++..|+ ++ +.|...||..++|.++.
T Consensus 912 ~~~~~~~~~--~~~~f~~~~L~~~~l~~---l~~~~~--~~~~l~~~~~v~~---n~---~~L~e~i~~~l~~~f~~--- 975 (1041)
T KOG2020|consen 912 IIAVLTDTD--HKAGFTKQVLKLQFLFR---LVESAK--LHTPLLQGNVVHG---NQ---AFLREYIYGLLRPAFPN--- 975 (1041)
T ss_pred HHHHHhccc--hhhcchHHHHHHHHHHH---HHHhhh--HHHhhccccccch---HH---HHHHHHHHHhhhhhchh---
Confidence 666543222 44688888877654321 211112 7788889999988 33 88999999999987544
Q ss_pred HHHhCCCCCHHHHHHHHHHHhc-C----CChHHHHHHHHHHHHhhcCCchHhhhhhhcccc-ccccCCCC
Q 001398 999 VLLSLPCITPQDLLAFEDALTK-T----ASPREQKQHMRSLLVLGTGNNLKALAAQKSVNV-ITNVSTRP 1062 (1085)
Q Consensus 999 vL~~lP~i~~~~l~~f~~~l~~-~----~s~K~qr~~~k~ll~~~~g~~l~~~~~~~~~~~-~~~~~~~~ 1062 (1085)
++.+.+.+|+..+.. . ...+.-|+ .......|.+.+++ ++..+ +.+.++++
T Consensus 976 -------~~~~~v~~~~~~~~~~~~~~~~~k~~~~d---~~~~e~~~~~~~~l---~~~e~~~~~~r~~~ 1032 (1041)
T KOG2020|consen 976 -------LTDEQVRAFDIGLFDECKDVSPFKDHVRD---VQIKEFGGQDTSDL---FREEAEIRLLRANQ 1032 (1041)
T ss_pred -------hchHHHHHHhHHHHHHhcccchhhcchhh---HHHHHhcccchHHH---HHHHhhHHhhhhhc
Confidence 444667777766654 2 22333333 33445567776664 23322 55555554
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-38 Score=359.37 Aligned_cols=497 Identities=14% Similarity=0.169 Sum_probs=369.7
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhH--HHHHHHHHHhhhhhhccccC---Cch-HHHHHHHHHHHHhh
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQ--AELVSMMLRWLPEDITVHNE---DLE-GDRRRLLLRGLTQS 76 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~--~El~l~iLr~L~EDv~~~~~---dl~-~~rr~~L~~~L~~~ 76 (1085)
.||++++++.++-.+||..|++|+.++.+.-..++.. .++.+++|..+..|+++ .+ +-+ ..|...++.+|+++
T Consensus 107 ~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad-~dv~rT~eei~knnliKDaMR~n 185 (980)
T KOG2021|consen 107 MNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIAD-QDVIRTKEEILKNNLIKDAMRDN 185 (980)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhh-ccccCChHHHHHHhhHHHHHHhh
Confidence 5899999999999999999999999999988777655 89999999999999986 32 223 45556678899997
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCChhhhhHH
Q 001398 77 -LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHA 155 (1085)
Q Consensus 77 -~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~r~~A 155 (1085)
+|+|..+||+++..+-. .....++..||.|+++|++||+++.|++..++++|..+++..++|.+|
T Consensus 186 dip~lv~~wyqil~~y~n--------------~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~ieelR~aa 251 (980)
T KOG2021|consen 186 DIPKLVNVWYQILKLYEN--------------IVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLNIEELRIAA 251 (980)
T ss_pred hHHHHHHHHHHHHHHHhc--------------cCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhHHHHHHHH
Confidence 99999999999885531 113578999999999999999999999888999999888899999999
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccccc
Q 001398 156 CEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARED 235 (1085)
Q Consensus 156 ~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~ 235 (1085)
|+|+.+|++|||+|-++.++.+. ++++ ++-++.. ....+++-+|+++++++++++|..+..++++..
T Consensus 252 c~cilaiVsKkMkP~dKL~lln~-L~q~-------l~lfg~~-----s~dq~~d~df~e~vskLitg~gvel~~i~s~ln 318 (980)
T KOG2021|consen 252 CNCILAIVSKKMKPMDKLALLNM-LNQT-------LELFGYH-----SADQMDDLDFWESVSKLITGFGVELTIIISQLN 318 (980)
T ss_pred HHHHHHHHhcCCChhHHHHHHHH-HHHH-------HHHHhhh-----ccccccCchHHHHHHHHHhhcceeeehhHhhhh
Confidence 99999999999988777765443 1111 1111111 111234567999999999999999988776421
Q ss_pred c------------cHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhh
Q 001398 236 T------------ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMR 303 (1085)
Q Consensus 236 ~------------~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 303 (1085)
+ .+....+.|++++.|..++++..+++||..++..+. +.+ .-.++ .
T Consensus 319 seld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LK-kl~--------------~ls~~------q- 376 (980)
T KOG2021|consen 319 SELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLK-KLK--------------ALSSP------Q- 376 (980)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHh-hcc--------------cccch------h-
Confidence 1 233466789999999999999999999999887631 111 00000 0
Q ss_pred hhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccc-c--CCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 001398 304 ILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDD-F--EGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERV 380 (1085)
Q Consensus 304 ~~~~~~~~i~~~Ll~v~~~km~~~~~~~~~~~~~e~~~~d-f--d~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l 380 (1085)
...+.+++.+++++|.+++.. +++++ . |+++.|.+||++++..++.++.++|..++..+.+-+
T Consensus 377 ------k~~l~~illai~kqicydemy--------~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~sl 442 (980)
T KOG2021|consen 377 ------KVPLHKILLAIFKQICYDEMY--------FNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSL 442 (980)
T ss_pred ------hccHHHHHHHHHHHHhccHHh--------hcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 144667888889999987643 23323 1 222346999999999999999999999999999999
Q ss_pred HHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCC---ChhHHHHH
Q 001398 381 MAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWT---EPPLVVAL 457 (1085)
Q Consensus 381 ~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~---dp~l~s~~ 457 (1085)
++.+.++ +...|...|.....+.....++......+++++..+ .+++.+++-.+++.... ++.+.-..
T Consensus 443 S~al~ns-----~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~----~~vl~~~~~ll~tsqv~~h~h~lVqLlf 513 (980)
T KOG2021|consen 443 SAALMNS-----KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDIST----SQVLFLNELLLMTSQVLAHDHELVQLLF 513 (980)
T ss_pred HHHHhcC-----CcchHHHHHHHHHHHHHHhhccccccccccCccccH----HHHHHHHHHHHHHcccccCCchHHHHHH
Confidence 8877653 223466667666666665554333222234444321 12455555555555444 44555566
Q ss_pred HHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 001398 458 GHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYL 537 (1085)
Q Consensus 458 l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l 537 (1085)
+..++.|-.|+...++.+|.||+.. |. |.+.++ ...+||+||+|+|-|..|...+.+.||++.|.+.++.+
T Consensus 514 mE~ivRY~kff~~esq~ip~vL~aF---ld--~rglhn----~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdl 584 (980)
T KOG2021|consen 514 MELIVRYNKFFSTESQKIPLVLNAF---LD--SRGLHN----KNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDL 584 (980)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHH---cc--chhccc----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777778999999999999876 43 344443 24479999999999999999999999999999999999
Q ss_pred HH---------cc-ccchHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHhh
Q 001398 538 QR---------EG-RLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQ 581 (1085)
Q Consensus 538 ~~---------~~-~L~~~e~~~L~Eal~~iss--~~~~~~q~~~l~~ll~P~~~~ 581 (1085)
+. +. ..+-..+..+||++|+++. ..+.|+|..+...++.|+...
T Consensus 585 L~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~ 640 (980)
T KOG2021|consen 585 LHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILD 640 (980)
T ss_pred HcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHH
Confidence 82 11 2445567799999999975 777889999999999998754
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.1e-25 Score=249.99 Aligned_cols=473 Identities=16% Similarity=0.218 Sum_probs=330.2
Q ss_pred cchhHHHHhhhhcccchhhHHHHHHHhhcC-ChhHHHHHHHHHHhhhhhhccccCC-chHHHHHHHHHHHHhhhhhHHHH
Q 001398 6 SDSCPCRRVRREGINLWQELFPSLVSLSSK-GPIQAELVSMMLRWLPEDITVHNED-LEGDRRRLLLRGLTQSLPEILPL 83 (1085)
Q Consensus 6 la~vlveivkrewp~~Wp~fl~eL~~l~~~-~~~~~El~l~iLr~L~EDv~~~~~d-l~~~rr~~L~~~L~~~~p~I~~~ 83 (1085)
.+.+++.|+-+++-++||+.+|.|+++... +.+++|-.+-.|..++||...+.+. .. -+.|+..+|+.+.|
T Consensus 110 vGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~-------~rpl~~mipkfl~f 182 (885)
T KOG2023|consen 110 VGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL-------TRPLNIMIPKFLQF 182 (885)
T ss_pred hhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc-------cCchHHhHHHHHHH
Confidence 466788899999999999999999998854 4589999999999999999876542 22 24566677877776
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccC-hHHHHHhhcCC--hhhhhHHHHHHH
Q 001398 84 LYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYG-IIHGCGFLLSS--PDFRLHACEFFK 160 (1085)
Q Consensus 84 ~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~-ll~~L~~ll~~--~~~r~~A~ecL~ 160 (1085)
+... ++.+...|+.|++.|+---+-+....-+ +++.|+.+.+| |++|...|..|.
T Consensus 183 ~~h~----------------------spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv 240 (885)
T KOG2023|consen 183 FKHP----------------------SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALV 240 (885)
T ss_pred HhCC----------------------ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 6521 2457888999999999766666666655 99999877776 899999999999
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHH
Q 001398 161 LVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSM 240 (1085)
Q Consensus 161 ~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~ 240 (1085)
-+..-+ ++.-.|+.+.++++|+.. .+ +.||+ -.-.-||+..+++.+-.- ...+..
T Consensus 241 ~Llevr--~dkl~phl~~IveyML~~----tq-----------d~dE~---VALEACEFwla~aeqpi~-----~~~L~p 295 (885)
T KOG2023|consen 241 FLLEVR--PDKLVPHLDNIVEYMLQR----TQ-----------DVDEN---VALEACEFWLALAEQPIC-----KEVLQP 295 (885)
T ss_pred HHHHhc--HHhcccchHHHHHHHHHH----cc-----------Ccchh---HHHHHHHHHHHHhcCcCc-----HHHHHH
Confidence 998877 644557889999998644 22 22222 333345555555443321 235667
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHH
Q 001398 241 YLQQMLGYFQHFKIALHFQSLLFWLALMRD-LMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDI 319 (1085)
Q Consensus 241 ~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~Ll~v 319 (1085)
||..+. | .+++. .|+..+.. ..+.-+.|. ..+ +| . +||.|..
T Consensus 296 ~l~kli---------------P---vLl~~M~Ysd~D~~-------LL~~~eeD~-~vp--Dr-e-----eDIkPRf--- 338 (885)
T KOG2023|consen 296 YLDKLI---------------P---VLLSGMVYSDDDII-------LLKNNEEDE-SVP--DR-E-----EDIKPRF--- 338 (885)
T ss_pred HHHHHH---------------H---HHHccCccccccHH-------HhcCccccc-cCC--ch-h-----hhccchh---
Confidence 777655 2 34444 34333200 000000000 010 11 0 1333331
Q ss_pred HHHHhhcccCCCCCCCCccccccccCCcchH--HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhH
Q 001398 320 SFQRLVKREKAPGTQGPLELWSDDFEGKGDF--SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDL 397 (1085)
Q Consensus 320 ~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef--~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~ 397 (1085)
...|...-++.. +++ ++ .++|+|||+-| |++||+---.+.-++.+.+...+.++.-.+...+.+ +.|
T Consensus 339 hksk~~~~~~~~-~~e-Dd-ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--------~~W 407 (885)
T KOG2023|consen 339 HKSKEHGNGEDA-DDE-DD-DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--------EEW 407 (885)
T ss_pred hhchhccCcccc-ccc-cc-cccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--------chh
Confidence 112221111110 000 11 12233333335 899999999999999999999988888777776653 578
Q ss_pred HHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCC--Cch
Q 001398 398 AVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYP--DAV 475 (1085)
Q Consensus 398 ~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~--~~l 475 (1085)
..-||....+.|+..||+.+..++ .+.++..+..+| +.+-|++|++.+|++++|++|+...+ +++
T Consensus 408 ~vrEagvLAlGAIAEGcM~g~~p~-------LpeLip~l~~~L------~DKkplVRsITCWTLsRys~wv~~~~~~~~f 474 (885)
T KOG2023|consen 408 KVREAGVLALGAIAEGCMQGFVPH-------LPELIPFLLSLL------DDKKPLVRSITCWTLSRYSKWVVQDSRDEYF 474 (885)
T ss_pred hhhhhhHHHHHHHHHHHhhhcccc-------hHHHHHHHHHHh------ccCccceeeeeeeeHhhhhhhHhcCChHhhh
Confidence 999999999999999999986544 355666666655 89999999999999999999876653 577
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHH--HHHH
Q 001398 476 GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHN--LLGE 553 (1085)
Q Consensus 476 ~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~--~L~E 553 (1085)
.+||+-+...+. +.+|+||.+||++|..+.......+.||++.|.+++...++. ++.|+ .||+
T Consensus 475 ~pvL~~ll~~ll-----------D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~k----YQ~KNLlILYD 539 (885)
T KOG2023|consen 475 KPVLEGLLRRLL-----------DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGK----YQKKNLLILYD 539 (885)
T ss_pred HHHHHHHHHHHh-----------cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH----HhhcceehHHH
Confidence 788777755443 357899999999999999999999999999999888877765 55555 8999
Q ss_pred HHHHHhcCCCHH-HHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHHhccCccchhhhHHHHHHHHHHhhh
Q 001398 554 AFLVMASAAGIQ-QQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKR 624 (1085)
Q Consensus 554 al~~iss~~~~~-~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~g~~~~~~~~~~~v~~~~~~lkr 624 (1085)
|++.++...+.. .+.++++.+|+|+.+.|. .+++ +++.-|-+..|++.+..+|+.
T Consensus 540 AIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~-------~lsd---------~DKdLfPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 540 AIGTLADSVGHALNKPAYIQILMPPLIEKWE-------LLSD---------SDKDLFPLLECLSSIASALGV 595 (885)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhccHHHHHHH-------hcCc---------ccchHHHHHHHHHHHHHHHhc
Confidence 999999876666 789999999999999995 2332 233466677777777666543
No 5
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.81 E-value=8.3e-20 Score=183.80 Aligned_cols=143 Identities=27% Similarity=0.439 Sum_probs=130.2
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccc-cCCchHHHHHHHHHHHHhhhhhHH
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVH-NEDLEGDRRRLLLRGLTQSLPEIL 81 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~-~~dl~~~rr~~L~~~L~~~~p~I~ 81 (1085)
.||++.++++|++|+||++||+|+++++++.+.++.++++++.+|+.++||+..+ ..++...||+++++.|.+.+|.|+
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~ 84 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDIL 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999964 345789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCChhhhhHHHHHH
Q 001398 82 PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFF 159 (1085)
Q Consensus 82 ~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~r~~A~ecL 159 (1085)
++++++++..... .+..++.++|+|+++|+.|+|++++.++++++.++.+++++++|..|+|||
T Consensus 85 ~~l~~~l~~~~~~--------------~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 85 EILSQILSQSSSE--------------ANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHCHC--------------CHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhhccc--------------cHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999876421 025789999999999999999999999999999998899999999999997
No 6
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.9e-12 Score=150.35 Aligned_cols=501 Identities=15% Similarity=0.167 Sum_probs=311.3
Q ss_pred cccchhHHHHhhhhcccchhhHHHHHHHhhcC--C-----hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhh
Q 001398 4 EKSDSCPCRRVRREGINLWQELFPSLVSLSSK--G-----PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS 76 (1085)
Q Consensus 4 nKla~vlveivkrewp~~Wp~fl~eL~~l~~~--~-----~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~ 76 (1085)
||+.--++..+-.-=|+.||+-+.+++.+-.. + ...|++.+.+|..++|+-- ...++..||..++..|...
T Consensus 104 ~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q--~~~l~~t~~~~l~~eLak~ 181 (982)
T KOG2022|consen 104 NKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQ--HVTLPLTRRSVLRGELAKF 181 (982)
T ss_pred HHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhh--hccchhHHHHHHHHHHHHH
Confidence 44444455555555578888888888876532 2 3578888888887777644 2368888999998889998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHHhhcC--ChhhhhH
Q 001398 77 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLS--SPDFRLH 154 (1085)
Q Consensus 77 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~--~~~~r~~ 154 (1085)
...+++.+-.+++..... +. +-........+++|+..|+.-+......=..+++.+.-.+. ....-.+
T Consensus 182 ~~~v~~l~e~vlr~~~n~---------t~-s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~l~~s~~~~~~a 251 (982)
T KOG2022|consen 182 SENVISLLEVVLRGGSNS---------TS-SLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDVLGQSTEGSYEA 251 (982)
T ss_pred HHHHhHHHHHHHhccccc---------cH-HHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhhccccccc
Confidence 888888555554433211 11 11112456778888666655444442110113333321111 1111233
Q ss_pred HHHHHHH------------HcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCChhhhHHHHHHHHHH
Q 001398 155 ACEFFKL------------VSPRKGPADASASEFESAMHDVFQILMKVSGEFLY--RSGTSAGAIDESEFEFAEYICESM 220 (1085)
Q Consensus 155 A~ecL~~------------i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~--~~~~~~~~~~E~~y~F~k~l~e~l 220 (1085)
|-+|++. .+.--..+ ..+.|.+-+..+........+..-. +.-.+++...|..+.|. ...
T Consensus 252 ~~~cmt~~~n~la~~~l~~~v~~i~q~--d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~----~i~ 325 (982)
T KOG2022|consen 252 AEKCMTIFGNVLADDTLLASVNDIIQP--DCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTFL----AIT 325 (982)
T ss_pred hhhhcccchhhhccchHHHHHHHhcCh--HHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH----HHH
Confidence 3334332 22211111 0011111111111111111111100 11112222234444444 444
Q ss_pred HHhhhhhc----ccccc--ccccHHHHHHHHHHhhccchH-----HHHHHHHHHHHHHHHHHhh-hhcccccCCCCCccc
Q 001398 221 VSLGTSNL----HCIAR--EDTILSMYLQQMLGYFQHFKI-----ALHFQSLLFWLALMRDLMS-KTKVAHSTGDGSTVN 288 (1085)
Q Consensus 221 ~~lg~~~~----~~~~~--~~~~l~~~L~~lL~~t~hpsl-----~ls~~~l~~W~~lLr~~~~-~~~~~~~~~~~~~~~ 288 (1085)
++++..+. .++.+ ....+..+++.++..|..|-. .+|..++.||.+|-..... +.+
T Consensus 326 v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e------------ 393 (982)
T KOG2022|consen 326 VSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINE------------ 393 (982)
T ss_pred HHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhc------------
Confidence 45544443 33321 123456677888888877644 3699999999998776321 111
Q ss_pred CCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccC
Q 001398 289 NADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNK 368 (1085)
Q Consensus 289 ~p~~~~~~~~~~~~~~~~~~~~~i~~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~ 368 (1085)
....|. ......+.-+|.++...|+..|.+ ..+..-.-|+.++|..||+...|++-++-++-
T Consensus 394 --------~~~~~~---~i~~~qIy~qlvei~l~K~~~Ps~-------e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~il 455 (982)
T KOG2022|consen 394 --------TQQIKK---QILSQQIYAQLVEILLKKLALPSK-------EIWLSWSSDSREQFESYRKDISDLLMSSYSIL 455 (982)
T ss_pred --------cCCcch---hHHHHHHHHHHHHHHHHHhcCCCH-------HHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 011137788899999999988753 12223456677889999999999999998887
Q ss_pred chHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCC
Q 001398 369 PLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKW 448 (1085)
Q Consensus 369 P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~ 448 (1085)
-+..++.+.+.+.+.+++..+ ++..+..-|++-.-..+|.... +..+. ..+..+++.+-+.+.
T Consensus 456 gd~ll~~L~~~l~q~~aa~d~---~p~s~~~tEaci~~~~sva~~~-------~~t~~-------~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 456 GDGLLDFLIDTLEQALAAGDE---DPDSLNRTEACIFQFQSVAEYL-------GETES-------TWIPRLFETSASIKL 518 (982)
T ss_pred hHHHHHHHHHHHHHhhhccCC---CchHHHHHHHHHHHHHHHHhhc-------Ccchh-------HHHHHHHHhcccccc
Confidence 777788888888887765422 2223445555555555554421 11111 236677777777766
Q ss_pred C--ChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchH
Q 001398 449 T--EPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH 526 (1085)
Q Consensus 449 ~--dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~ 526 (1085)
+ +|.+.+-....++.++-|++.||..+..+|+-+|..++. + +.-.++.+.+-++|+.++..+.||
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~-s------------k~s~q~i~tl~tlC~~C~~~L~py 585 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN-S------------KESEQAISTLKTLCETCPESLDPY 585 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC-c------------hHHHHHHHHHHHHHHhhhhhCchH
Confidence 6 778888999999999999999999999999999998861 1 112377888999999999999999
Q ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhh
Q 001398 527 MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQW 582 (1085)
Q Consensus 527 ~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W 582 (1085)
.+++.......+..+...+..+..++.++|.+.++..+|.+..++-.|+.|+.++-
T Consensus 586 ~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 586 ADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred HHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999996669999999999999998764
No 7
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3e-12 Score=146.19 Aligned_cols=455 Identities=16% Similarity=0.150 Sum_probs=315.8
Q ss_pred chhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 001398 21 LWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVG 100 (1085)
Q Consensus 21 ~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~~~~~~Le~~~~~~~~~~~ 100 (1085)
.|.+-+.|+++..+..+...=..+.+|+-++||+.+..-.....||.++.+.+....+.++.++...+|..-.
T Consensus 95 ~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l~~lLe~~~l------- 167 (559)
T KOG2081|consen 95 EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFLSDLLERSDL------- 167 (559)
T ss_pred hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhhcCC-------
Confidence 6888888888877665444557899999999999985444668999999999999999999999988885421
Q ss_pred hhchHHHhhHHHHHHHHHHHHHhccc--cCCcchhccc-ChHHHHHhhcCChhhhhHHHHHHHHHcCCCCCCCCChHHHH
Q 001398 101 RQQLDVAKQHAATVTATLNAINAYAE--WAPLPDLAKY-GIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFE 177 (1085)
Q Consensus 101 ~~~~~~a~~~~~~v~~aL~tl~~yl~--Wip~~~i~~~-~ll~~L~~ll~~~~~r~~A~ecL~~i~sRk~~~~~~~~lf~ 177 (1085)
++ ......+|+|++.+.. =.|++++.+. .++...+..+++.++-..|.+|+.++..+....++..+ |.
T Consensus 168 --~~------~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~~-~~ 238 (559)
T KOG2081|consen 168 --KS------SDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGLP-LA 238 (559)
T ss_pred --Ch------hhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccCc-hh
Confidence 01 2467888888666655 4677777666 58888888888999999999999998876532212111 22
Q ss_pred HHHH---HHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhhccchH
Q 001398 178 SAMH---DVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKI 254 (1085)
Q Consensus 178 ~~l~---~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl 254 (1085)
..+- .++....+.+. ..++++=.+.+|.+++.+|....-.+..+++..-..+..+|..+.|+..
T Consensus 239 ~~l~~~v~~L~~~~~~a~-------------~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~ 305 (559)
T KOG2081|consen 239 AILFIGVIILETAFHLAM-------------AGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDT 305 (559)
T ss_pred HHHhccccccchHHHHhh-------------cccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCch
Confidence 1110 11111111111 1222334566788888888766555544444333556788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCC
Q 001398 255 ALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQ 334 (1085)
Q Consensus 255 ~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~Ll~v~~~km~~~~~~~~~~ 334 (1085)
++-+.++.||..+=+.++-... .+ ..-+++++.-.++..+..+...|.+.
T Consensus 306 evie~SF~fW~~lse~l~~~~~----------------------~~----~~~~frpy~~rLvs~l~~h~qlp~~~---- 355 (559)
T KOG2081|consen 306 EVIEASFNFWYSLSEELTLTDD----------------------DE----ALGIFRPYFLRLVSLLKRHVQLPPDQ---- 355 (559)
T ss_pred hhhhhhHHhhhhhHHHHhcccc----------------------HH----HHHHhHHHHHHHHHHHHHHccCCCcc----
Confidence 9999999999998766432211 00 01134577888888888888776521
Q ss_pred CCccccccccCCcchHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHh
Q 001398 335 GPLELWSDDFEGKGDFSQYRSRLLELVKFVASN-KPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSA 413 (1085)
Q Consensus 335 ~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~-~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~ 413 (1085)
.+-.|+..+|.+||....|+++=++.+ .-..+++.+..++.+ .+ .+|-..||.-..++++++.
T Consensus 356 ------~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~--------~~We~~EAaLF~l~~~~~~ 419 (559)
T KOG2081|consen 356 ------FDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NN--------ASWEEVEAALFILRAVAKN 419 (559)
T ss_pred ------ccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CC--------CchHHHHHHHHHHHHHhcc
Confidence 123455668999999999999877765 445667776666655 11 2477789999999999886
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCC
Q 001398 414 VFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF 493 (1085)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~ 493 (1085)
+.... . .++.+.++.+.++-...| ++-..+-.++.|+.++..||+++-.|++-++..+..
T Consensus 420 ~~~~e-------~-------~i~pevl~~i~nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~----- 479 (559)
T KOG2081|consen 420 VSPEE-------N-------TIMPEVLKLICNLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQL----- 479 (559)
T ss_pred CCccc-------c-------chHHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhh-----
Confidence 54321 1 124456666666666666 666666789999999999999999999999887651
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001398 494 KDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAW 573 (1085)
Q Consensus 494 ~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ 573 (1085)
+ .+..+|+-.|-++|..+...+.++++++.+.+..+... ..+ .|-..|..++..+++..+..+-+.-+++
T Consensus 480 ~--------~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~-~~~-~e~a~l~~~~s~i~~~lp~~k~~~~~~e 549 (559)
T KOG2081|consen 480 K--------RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDST-QIN-EEAACLLQGISLIISNLPAHKAKIALEE 549 (559)
T ss_pred c--------chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hcc-HHHHHHHHHHHHHHhcCCHhhhhHHHHH
Confidence 1 15668999999999999999999999887777655543 333 3333477777777776667766777788
Q ss_pred HhHHHHh
Q 001398 574 LLEPLSQ 580 (1085)
Q Consensus 574 ll~P~~~ 580 (1085)
+.+|...
T Consensus 550 l~~~~l~ 556 (559)
T KOG2081|consen 550 LCEPQLR 556 (559)
T ss_pred HhhHHHh
Confidence 8777653
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.7e-08 Score=122.39 Aligned_cols=309 Identities=16% Similarity=0.174 Sum_probs=176.3
Q ss_pred cccchhHHHHhhhhcccchhhHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHH
Q 001398 4 EKSDSCPCRRVRREGINLWQELFPSLVSLSS-KGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILP 82 (1085)
Q Consensus 4 nKla~vlveivkrewp~~Wp~fl~eL~~l~~-~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~ 82 (1085)
+|++.+++||++-+.|..||++++-|.+..+ .++..+|.+++||..++|.+.. . + ...++.+..
T Consensus 98 ~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~-~-------------~~~~~~l~~ 162 (1075)
T KOG2171|consen 98 HKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-T-L-------------QPHLDDLLR 162 (1075)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-c-c-------------chhHHHHHH
Confidence 6999999999999999999999999999874 5689999999999999987764 1 1 111222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCC--cchhcc-cChHH----HHHhhc--CChhhhh
Q 001398 83 LLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAP--LPDLAK-YGIIH----GCGFLL--SSPDFRL 153 (1085)
Q Consensus 83 ~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip--~~~i~~-~~ll~----~L~~ll--~~~~~r~ 153 (1085)
++. +..+ + .+ ..+..++++++++|+.-.+ ...+-. .++++ .+.-.. ++.+.-.
T Consensus 163 lf~----q~~~------d--~s------~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 163 LFS----QTMT------D--PS------SPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred HHH----Hhcc------C--Cc------chHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 222 2211 0 01 1266777888888877665 222211 12444 332233 2345567
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccc
Q 001398 154 HACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAR 233 (1085)
Q Consensus 154 ~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~ 233 (1085)
.+.+||.+++.-- + +.+...+..|++..+.++.. ..+++.-
T Consensus 225 ~~l~~l~El~e~~--p----k~l~~~l~~ii~~~l~Ia~n---------~~l~~~~------------------------ 265 (1075)
T KOG2171|consen 225 SALEALIELLESE--P----KLLRPHLSQIIQFSLEIAKN---------KELENSI------------------------ 265 (1075)
T ss_pred HHHHHHHHHHhhc--h----HHHHHHHHHHHHHHHHHhhc---------ccccHHH------------------------
Confidence 8888888888644 2 34455555555443333221 1111111
Q ss_pred ccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhH
Q 001398 234 EDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDIS 313 (1085)
Q Consensus 234 ~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~ 313 (1085)
...+|.|-.++.+..-.+.+ +... +-+.++
T Consensus 266 -----------------------R~~ALe~ivs~~e~Ap~~~k--------------------------~~~~-~~~~lv 295 (1075)
T KOG2171|consen 266 -----------------------RHLALEFLVSLSEYAPAMCK--------------------------KLAL-LGHTLV 295 (1075)
T ss_pred -----------------------HHHHHHHHHHHHHhhHHHhh--------------------------hchh-hhccHH
Confidence 11122222233332000000 0000 001333
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCccccccccCCcch-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCC
Q 001398 314 GAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGD-FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTM 392 (1085)
Q Consensus 314 ~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~e-f~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~ 392 (1085)
+.++. |.-+++. + .++.+.|..+++| -.++|--.+-+=|..+++-|...+.-+.+++...+.+.
T Consensus 296 ~~~l~-----~mte~~~--D---~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~----- 360 (1075)
T KOG2171|consen 296 PVLLA-----MMTEEED--D---DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST----- 360 (1075)
T ss_pred HHHHH-----hcCCccc--c---hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC-----
Confidence 33332 2222221 1 1233333333333 36788777777788888999999999999999888653
Q ss_pred ChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCChhHHHHHHHHHHhhhh
Q 001398 393 PAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGP 466 (1085)
Q Consensus 393 ~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~ 466 (1085)
.|-+..|.-..+-++..||.+.. ...+..++...+. .+..+|.++--.+-.+++++.
T Consensus 361 ---~w~~R~AaL~Als~i~EGc~~~m--------------~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 361 ---EWKERHAALLALSVIAEGCSDVM--------------IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred ---CHHHHHHHHHHHHHHHcccHHHH--------------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 56778888888888877775521 2234444444443 477888888777777777765
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3.6e-07 Score=107.64 Aligned_cols=396 Identities=18% Similarity=0.175 Sum_probs=234.7
Q ss_pred ccchhHHHHhhhhccc-chhhHHHHHHHhhcCC--hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHH
Q 001398 5 KSDSCPCRRVRREGIN-LWQELFPSLVSLSSKG--PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEIL 81 (1085)
Q Consensus 5 Kla~vlveivkrewp~-~Wp~fl~eL~~l~~~~--~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~ 81 (1085)
-++++++.|+.-|-|+ .||+|+..|++--..+ ....|-+|..+..++||+.. + ...++-++++.++..-+.
T Consensus 109 ~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p--e-vl~~~sN~iLtaIv~gmr--- 182 (859)
T KOG1241|consen 109 SAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP--E-VLEQQSNDILTAIVQGMR--- 182 (859)
T ss_pred hHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH--H-HHHHHHhHHHHHHHhhcc---
Confidence 4689999999999997 7999999999876433 24678999999999999985 2 333334444333322111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhc--ccC-hHHHHH--hhcCChhhhhHHH
Q 001398 82 PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLA--KYG-IIHGCG--FLLSSPDFRLHAC 156 (1085)
Q Consensus 82 ~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~--~~~-ll~~L~--~ll~~~~~r~~A~ 156 (1085)
+ ......+..+|+++|...++..--+.=. +-+ +++..| -..++.++|.+|.
T Consensus 183 ----------------k--------~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~ 238 (859)
T KOG1241|consen 183 ----------------K--------EETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAF 238 (859)
T ss_pred ----------------c--------cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHH
Confidence 0 1112468899999998888876543322 223 556555 4667799999999
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccc
Q 001398 157 EFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDT 236 (1085)
Q Consensus 157 ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~ 236 (1085)
.||.-|++.- |+|.+.-.+
T Consensus 239 ~ClvkIm~Ly-------------------------------------------Y~~m~~yM~------------------ 257 (859)
T KOG1241|consen 239 QCLVKIMSLY-------------------------------------------YEFMEPYME------------------ 257 (859)
T ss_pred HHHHHHHHHH-------------------------------------------HHHHHHHHH------------------
Confidence 9999887643 122221110
Q ss_pred cHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHH
Q 001398 237 ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAI 316 (1085)
Q Consensus 237 ~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~L 316 (1085)
+..+.+-+.-++.+...|....++||+++....+.-...... .++.+..+ ..+. +..---++++|.|
T Consensus 258 --~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e--------~~d~~~~p--~~~~-fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 258 --QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE--------AVDQGLPP--SSKY-FARQALQDVVPVL 324 (859)
T ss_pred --HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhcCCCc--hhhH-HHHHHHhHhhHHH
Confidence 011111122223445567788899999988873221000000 00011110 0011 1101113566666
Q ss_pred HHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhh
Q 001398 317 LDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQD 396 (1085)
Q Consensus 317 l~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~ 396 (1085)
++ .|.|.++ |+|+|+ |+--+-...++-..+...-++...++..-+.+-+.+ |.
T Consensus 325 l~----~L~kqde-------------~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~--------pd 377 (859)
T KOG1241|consen 325 LE----LLTKQDE-------------DDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN--------PD 377 (859)
T ss_pred HH----HHHhCCC-------------Cccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC--------cc
Confidence 54 4444221 222222 666666677777777666677777766666666554 46
Q ss_pred HHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCh--hHHHHHHHHHHhhhhhhh---cC
Q 001398 397 LAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGHYLDALGPFLK---YY 471 (1085)
Q Consensus 397 ~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp--~l~s~~l~~l~~l~~fl~---~~ 471 (1085)
|-..|+......+|+.| +. ...+.+.+.+.+..++..-. || .++.-.-|+|++..-++- .+
T Consensus 378 wr~reaavmAFGSIl~g-p~------------~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 378 WRNREAAVMAFGSILEG-PE------------PDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hhhhhHHHHHHHhhhcC-Cc------------hhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhccc
Confidence 88899998888888775 11 12233344444544444222 55 466777888888776553 23
Q ss_pred CCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhcc---------CccchHHHHHHHHHHHHHHccc
Q 001398 472 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD---------KSILPHMKDIADTMAYLQREGR 542 (1085)
Q Consensus 472 ~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~---------~~l~P~~~~i~~~i~~l~~~~~ 542 (1085)
-..+..++.-+.+.|+..| ++-..+|-+|..+++.++ ....|+++.| +..|+...+
T Consensus 444 ~~~l~~~l~~l~~gL~DeP------------rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i---i~~Ll~~td 508 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLNDEP------------RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI---IGSLLKVTD 508 (859)
T ss_pred HhhhhHHHHHHHHHhhhCc------------hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH---HHHHHhhcc
Confidence 4567778887777776323 234578999999998742 1355888888 445555432
Q ss_pred c-chH---HHHHHHHHHHHHhc
Q 001398 543 L-LRG---EHNLLGEAFLVMAS 560 (1085)
Q Consensus 543 L-~~~---e~~~L~Eal~~iss 560 (1085)
. +.. -|.+.||||+-++-
T Consensus 509 r~dgnqsNLR~AAYeALmElIk 530 (859)
T KOG1241|consen 509 RADGNQSNLRSAAYEALMELIK 530 (859)
T ss_pred ccccchhhHHHHHHHHHHHHHH
Confidence 2 223 35699999998875
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00061 Score=78.48 Aligned_cols=393 Identities=12% Similarity=0.044 Sum_probs=205.7
Q ss_pred ccchhHHHHhhhhccc-chhhHHHHHHHhhcCC--hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhh-H
Q 001398 5 KSDSCPCRRVRREGIN-LWQELFPSLVSLSSKG--PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPE-I 80 (1085)
Q Consensus 5 Kla~vlveivkrewp~-~Wp~fl~eL~~l~~~~--~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~-I 80 (1085)
-.+++++.|+.-|-|. .||+|+.+++.....+ .+..--.+.++...+|-... +++. +.... +
T Consensus 113 ~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li------------~~sN~il 178 (858)
T COG5215 113 MAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLI------------QMSNVIL 178 (858)
T ss_pred HHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHH------------HHhhHHH
Confidence 4689999999999996 7999999999876433 22223356666666654332 1111 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcc--cC-hHHHHH--hhcCChhhhhHH
Q 001398 81 LPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAK--YG-IIHGCG--FLLSSPDFRLHA 155 (1085)
Q Consensus 81 ~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~--~~-ll~~L~--~ll~~~~~r~~A 155 (1085)
|..+...+. .....++..++|++|..-+..+.-+.=.+ -+ +++..| --.++.+++.+|
T Consensus 179 ~aiv~ga~k-----------------~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aa 241 (858)
T COG5215 179 FAIVMGALK-----------------NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAA 241 (858)
T ss_pred HHHHHhhcc-----------------cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHH
Confidence 111111111 11124688899999776544433322221 12 445444 344567778888
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccccc
Q 001398 156 CEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARED 235 (1085)
Q Consensus 156 ~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~ 235 (1085)
.-||.-|+... |.|.+-..|
T Consensus 242 fgCl~kim~Ly-------------------------------------------Y~fm~~ymE----------------- 261 (858)
T COG5215 242 FGCLNKIMMLY-------------------------------------------YKFMQSYME----------------- 261 (858)
T ss_pred HHHHHHHHHHH-------------------------------------------HHHHHHHHH-----------------
Confidence 88887665422 223321111
Q ss_pred ccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhh---hcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhh
Q 001398 236 TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSK---TKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDI 312 (1085)
Q Consensus 236 ~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i 312 (1085)
+....+.-+++..|...|...+++||.++....+.- .+..+ ..+..+.|| ...--.|+
T Consensus 262 ---~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p-e~p~qn~~f---------------a~aav~dv 322 (858)
T COG5215 262 ---NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP-EVPAQNHGF---------------ARAAVADV 322 (858)
T ss_pred ---HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc-cCchhhcch---------------HHHHHHHH
Confidence 012233455667777888899999998888762211 00000 000011111 11111478
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCC
Q 001398 313 SGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTM 392 (1085)
Q Consensus 313 ~~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~ 392 (1085)
+|.||...- |.+ +|+++|+ |+--.....++..-+.+.-.....-+..-+.+ .+
T Consensus 323 lP~lL~LL~----~q~-------------ed~~~Dd--Wn~smaA~sCLqlfaq~~gd~i~~pVl~FvEq--------ni 375 (858)
T COG5215 323 LPELLSLLE----KQG-------------EDYYGDD--WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQ--------NI 375 (858)
T ss_pred HHHHHHHHH----hcC-------------CCccccc--cchhhhHHHHHHHHHHHhhhHhHHHHHHHHHH--------hc
Confidence 888875331 111 1232222 33333334444444433322222222222222 24
Q ss_pred ChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCh--hHHHHHHHHHHhhhhhhhc
Q 001398 393 PAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGHYLDALGPFLKY 470 (1085)
Q Consensus 393 ~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp--~l~s~~l~~l~~l~~fl~~ 470 (1085)
.++.|...|+......+|+.|=.. ..+...+.+.+--++.... || .+.+...||+++++.++..
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~-------------~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCE-------------DCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccH-------------HHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHH
Confidence 556789999999988888775111 2233334444444443222 66 4778999999999887644
Q ss_pred --CC-CchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHh-------ccCccchHHHHHHHHHHHHHHc
Q 001398 471 --YP-DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-------SDKSILPHMKDIADTMAYLQRE 540 (1085)
Q Consensus 471 --~~-~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~-------~~~~l~P~~~~i~~~i~~l~~~ 540 (1085)
.| ..++.+..+..-.++..|. +-..||-.+..++.. .+..+.||+..|.+.+-.-...
T Consensus 442 ~i~p~~Hl~~~vsa~liGl~D~p~------------~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~ 509 (858)
T COG5215 442 IISPCGHLVLEVSASLIGLMDCPF------------RSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL 509 (858)
T ss_pred hcCccccccHHHHHHHhhhhccch------------HHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh
Confidence 23 4667777777555543232 112344445544443 3666888888885543311111
Q ss_pred cccchHHHHHHHHHHHHHhc
Q 001398 541 GRLLRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 541 ~~L~~~e~~~L~Eal~~iss 560 (1085)
..=...-|..+|++|+.++-
T Consensus 510 ~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 510 ALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred hccchhHHHHHHHHHHHHHh
Confidence 11113446799999999986
No 11
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00063 Score=83.42 Aligned_cols=418 Identities=15% Similarity=0.193 Sum_probs=220.6
Q ss_pred cchhHHHHhhhhcccchhhHHHHHHHhhcCC-hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHHHH
Q 001398 6 SDSCPCRRVRREGINLWQELFPSLVSLSSKG-PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLL 84 (1085)
Q Consensus 6 la~vlveivkrewp~~Wp~fl~eL~~l~~~~-~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~~~ 84 (1085)
++.++.-|++.++|.+||++++-+-.+.+.+ .++.--.|.+|+.|+- .+.| --..+|..|-..+..-+|.|+..+
T Consensus 109 l~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k-~ye~---k~~eeR~~l~~~v~~~fP~il~~~ 184 (1010)
T KOG1991|consen 109 LTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK-TYEW---KKDEERQPLGEAVEELFPDILQIF 184 (1010)
T ss_pred HHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH-HHhh---ccccccccHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999998877555 4555667788887762 1111 123455566667777789998888
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCChhhhhHHHHHHHHHcC
Q 001398 85 YSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSP 164 (1085)
Q Consensus 85 ~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~r~~A~ecL~~i~s 164 (1085)
++++...- -+.+.+...-|++...++----+-.+ ..++.-..=++-+..|++
T Consensus 185 ~~ll~~~s---------------~~s~el~klIlKifks~~~~~LP~~L-------------~~~~~f~~W~~l~l~i~~ 236 (1010)
T KOG1991|consen 185 NGLLSQES---------------YQSVELQKLILKIFKSLIYYELPLEL-------------SAPETFTSWMELFLSILN 236 (1010)
T ss_pred Hhhccccc---------------hHHHHHHHHHHHHHHHHHHHhCCHHh-------------hCchhHHHHHHHHHHHHc
Confidence 88876321 11234555556654434332122222 223333344444556677
Q ss_pred CCCCCC-------CChH--HH---HHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccc
Q 001398 165 RKGPAD-------ASAS--EF---ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIA 232 (1085)
Q Consensus 165 Rk~~~~-------~~~~--lf---~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~ 232 (1085)
|..+.+ +|.. -. .-++.. +.++|.+.+. +.....+..+|.+.++.-...
T Consensus 237 rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~--------L~Rlf~Ryg~-~~~~~~~y~~Fa~~f~~n~~~---------- 297 (1010)
T KOG1991|consen 237 RPVPVEVLSLDPEDRSSWPWWKCKKWALHI--------LNRLFERYGS-PSLVVPEYKEFAQMFLKNFAQ---------- 297 (1010)
T ss_pred CCCChhcccCChhhcccccchhhHHHHHHH--------HHHHHHHhCC-ccccchhhHHHHHHHHHHHHH----------
Confidence 765431 1111 01 001111 1223333322 222223333455555432111
Q ss_pred cccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhh
Q 001398 233 REDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDI 312 (1085)
Q Consensus 233 ~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i 312 (1085)
..+..||..+-+..+ .+.++-.++-+-..++.+..++... . ..
T Consensus 298 ---~ile~~lk~l~~~~~--~~yls~rvl~~~l~fl~~~Vs~~~t--------------------------w------kl 340 (1010)
T KOG1991|consen 298 ---GILEVFLKILEQWRQ--QLYLSDRVLYYLLNFLEQCVSHAST--------------------------W------KL 340 (1010)
T ss_pred ---HHHHHHHHHHHHHHh--cccCCHHHHHHHHHHHHHhccHHHH--------------------------H------HH
Confidence 123444554444444 4445555555555555552222110 0 12
Q ss_pred HHHHHHHHHHHhhcccCCCC--------CCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 001398 313 SGAILDISFQRLVKREKAPG--------TQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAII 384 (1085)
Q Consensus 313 ~~~Ll~v~~~km~~~~~~~~--------~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l 384 (1085)
+.+-+.++++..++|--... +++ .||.+.-||=-+++..=+.-..+++-.+++.+-..+++.+..-+...+
T Consensus 341 l~PHl~~ii~~vIFPlmc~~d~deelwe~DP-~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il 419 (1010)
T KOG1991|consen 341 LKPHLQVIIQDVIFPLMCFNDEDEELWEEDP-YEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDIL 419 (1010)
T ss_pred hhhHHHHHHHHhhhhhcCCCcccHHHHhcCH-HHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 22223444444444433221 111 334443343333443444555666777777775677776666676666
Q ss_pred hhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCh--hHHHHHHHHHH
Q 001398 385 NSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGHYLD 462 (1085)
Q Consensus 385 ~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp--~l~s~~l~~l~ 462 (1085)
.+..+.+.+-.....-|+..+.+.++.+-+.+.+ .+ -..++.++...+--.+++| -++++.+|+++
T Consensus 420 ~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s-~~-----------~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 420 TRYKEASPPNKNPRQKDGALRMVGSLASILLKKS-PY-----------KSQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred HhhcccCCCccChhhhhhHHHHHHHHHHHHccCC-ch-----------HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 6544433333456788899999988876554422 11 2346777777776566677 49999999999
Q ss_pred hhhhh-hhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHH---HhccCccchHHHHHHHHHH
Q 001398 463 ALGPF-LKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIA---KTSDKSILPHMKDIADTMA 535 (1085)
Q Consensus 463 ~l~~f-l~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~---~~~~~~l~P~~~~i~~~i~ 535 (1085)
+|+.. ++. +.-+.+.++-...+|.. +...-||-.|+-++..+- ..++..+.||+.++.+.+-
T Consensus 488 ~~~~~df~d-~~~l~~ale~t~~~l~~----------d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 488 QFSSIDFKD-PNNLSEALELTHNCLLN----------DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELL 553 (1010)
T ss_pred HHHhccCCC-hHHHHHHHHHHHHHhcc----------CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH
Confidence 99953 332 33344444544444431 111234555555554444 4455668888888744443
No 12
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.16 Score=62.00 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=34.2
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHc--cc-cchHHHHHHHHHHHHHhc
Q 001398 511 SFIRIAKTSDKSILPHMKDIADTMAYLQRE--GR-LLRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 511 ~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~--~~-L~~~e~~~L~Eal~~iss 560 (1085)
+..|+-...+..+.|+...++..+.++... .+ =.++-...|+|++++++.
T Consensus 571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~ 623 (960)
T KOG1992|consen 571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIR 623 (960)
T ss_pred HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Confidence 455666667778888888887766665543 12 345666688999988864
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.26 E-value=0.7 Score=57.18 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHH
Q 001398 449 TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMK 528 (1085)
Q Consensus 449 ~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~ 528 (1085)
..|.+.-...+.++-|+.-+...|+++.-.+++....++ +. .. . -+|-+||..|...| .+..+.|+.+
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~--~~-~~--~-----~~ki~a~~~~~~~~--~~~vl~~~~p 529 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALT--MD-VP--P-----PVKISAVRAFCGYC--KVKVLLSLQP 529 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc--cC-CC--C-----chhHHHHHHHHhcc--Cceeccccch
Confidence 356555577777776666556678888888888877665 11 11 1 13445666666666 5677889999
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHhc
Q 001398 529 DIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 529 ~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss 560 (1085)
.|.+.+.++.. +-+..-.+.++|+|-.++.
T Consensus 530 ~ild~L~qlas--~~s~evl~llmE~Ls~vv~ 559 (1005)
T KOG2274|consen 530 MILDGLLQLAS--KSSDEVLVLLMEALSSVVK 559 (1005)
T ss_pred HHHHHHHHHcc--cccHHHHHHHHHHHHHHhc
Confidence 99888877665 4555666788999877765
No 14
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.64 Score=56.71 Aligned_cols=270 Identities=13% Similarity=0.082 Sum_probs=126.5
Q ss_pred hhhcchhhhHHHHHHHHHHHhhccc--CCCC--CCCCccccccccCCcchH-HHHHHHHHHHHHHHhccCchHHHHHHHH
Q 001398 304 ILSFLNDDISGAILDISFQRLVKRE--KAPG--TQGPLELWSDDFEGKGDF-SQYRSRLLELVKFVASNKPLVAGVKVSE 378 (1085)
Q Consensus 304 ~~~~~~~~i~~~Ll~v~~~km~~~~--~~~~--~~~~~e~~~~dfd~~~ef-~~~R~~~~~ilr~i~~~~P~~~~~~~~~ 378 (1085)
...|+++.-+..|.+..+.+...-. +.++ .++ |.|..|-+. .++ -++|-+...+..-+-.-.-+.....+.+
T Consensus 362 ~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dP--E~~~~Eq~~-~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~ 438 (978)
T KOG1993|consen 362 YNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDP--EGWVLEQSG-GDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLD 438 (978)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcCh--HHhhhhccc-ccceeccchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 4467778888888888888776532 2210 011 222111111 123 3455554444444432222333344444
Q ss_pred HHHHHHhhcccCC-CChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHh-----ccCCCChh
Q 001398 379 RVMAIINSLLIST-MPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-----SLKWTEPP 452 (1085)
Q Consensus 379 ~l~~~l~~~~~~~-~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll-----~~~~~dp~ 452 (1085)
.+.+......... -+-...+.-||.+....-....++... | +..|++.-+ .-...--.
T Consensus 439 ~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~------d----------F~~Wl~~~llpEl~~~~~~~Ri 502 (978)
T KOG1993|consen 439 MIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL------D----------FDKWLQEALLPELANDHGNSRI 502 (978)
T ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC------C----------HHHHHHHhhCHHhhhcccchhH
Confidence 4444333210000 111345555665554443333332211 1 223333222 11222225
Q ss_pred HHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHh---ccCccchHHHH
Q 001398 453 LVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT---SDKSILPHMKD 529 (1085)
Q Consensus 453 l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~---~~~~l~P~~~~ 529 (1085)
++.++.+.+++-..+ +. +.-+...+-+.|--+. -|.+ -+-||..++.+|..+... .++.+.||++.
T Consensus 503 iRRRVa~ilg~Wvsv-q~-~~e~k~l~Y~a~lnLL-~d~~--------D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~len 571 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSV-QQ-KLELKPLLYCAFLNLL-QDQN--------DLVVRLTTARTLKLVVDDWNFSEDSFLPYLEN 571 (978)
T ss_pred HHHHHHHHHhhhhhe-ec-hHhHHHHHHHHHHHhc-Cccc--------cceeehHHHHHHHHhhhhccCChhhhhhhHHH
Confidence 778888888876651 22 1222333332222121 0321 124788899999888888 58999999999
Q ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhChHhHHh----hhcCChHHHHHhccCc
Q 001398 530 IADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQN----NYLSEPLGLVRLCSDT 605 (1085)
Q Consensus 530 i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W~~~~~~~----~~l~~~~~f~~~~g~~ 605 (1085)
+...+-.++..-.. -.-|......+..++...+..-. -+...+++-+-.-|...+-.+ +.+.....||+-+|+.
T Consensus 572 lf~~lfkll~~~~e-~Dtk~~VL~~ls~lI~r~~e~I~-P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 572 LFVLLFKLLKAVEE-CDTKTSVLNLLSTLIERVSEHIA-PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 98777777664211 12233333444444332222211 334445555555565333111 2333335677777743
No 15
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=1.8 Score=51.86 Aligned_cols=246 Identities=10% Similarity=0.113 Sum_probs=135.7
Q ss_pred cchhHHHHhhhhcccc------hhhHHHHHHHhhcCC-hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhh-h
Q 001398 6 SDSCPCRRVRREGINL------WQELFPSLVSLSSKG-PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS-L 77 (1085)
Q Consensus 6 la~vlveivkrewp~~------Wp~fl~eL~~l~~~~-~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~-~ 77 (1085)
+.++++.+-|.+|... ..+-+.++....+.+ .-+|-+...||-.|..|+-...-..+..+-|.+....+.. +
T Consensus 104 LiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL 183 (1082)
T KOG1410|consen 104 LIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADGMDPSTKHRKIASSFRDDSL 183 (1082)
T ss_pred HHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHH
Confidence 4577888999999863 356777777777665 5688899999999999987633335677778888888776 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHh-ccc-------------cCCcc--hhc-ccChHH
Q 001398 78 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINA-YAE-------------WAPLP--DLA-KYGIIH 140 (1085)
Q Consensus 78 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~-yl~-------------Wip~~--~i~-~~~ll~ 140 (1085)
=+||....+.|...+...++...++ .--..+..-+|+|++- |+. -||.+ .++ +...++
T Consensus 184 ~~vf~laln~L~~~~~~nlnd~~q~-----~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlq 258 (1082)
T KOG1410|consen 184 FDVFSLALNLLKDNVDLNLNDRAQL-----GLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQ 258 (1082)
T ss_pred HHHHHHHHHHHHHhcccCcccHhHh-----hHHHHHHHHHhhhccccccccccccccccccceecCcHHHHHhcCchHHH
Confidence 5899988888876653222110000 0011234445555431 111 23332 112 233677
Q ss_pred HHHhhcCC--hhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-hhhhHHHHHHH
Q 001398 141 GCGFLLSS--PDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAID-ESEFEFAEYIC 217 (1085)
Q Consensus 141 ~L~~ll~~--~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-E~~y~F~k~l~ 217 (1085)
+.+.+.++ |++-..|++||.++++-++..- +.+.=..++..+... ..+++. +|.+.. .++| ..+|
T Consensus 259 lfFdly~slp~~~S~~alsclvqlASvRRsLF-N~aeRa~yl~~Lv~G----vk~il~----np~~LsD~~ny---HeFC 326 (1082)
T KOG1410|consen 259 LFFDLYHSLPPELSELALSCLVQLASVRRSLF-NGAERAKYLQHLVEG----VKRILE----NPQGLSDPANY---HEFC 326 (1082)
T ss_pred HHHHHhccCCchhhHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH----HHHHHh----CCcCCCCcchH---HHHH
Confidence 66544433 7889999999999998764321 111111223332222 222222 343333 3333 4567
Q ss_pred HHHHHhhh--hhccccccccccHHHHHHHHHHhhcc--chHHH----HHHHHHHHHHHHHH
Q 001398 218 ESMVSLGT--SNLHCIAREDTILSMYLQQMLGYFQH--FKIAL----HFQSLLFWLALMRD 270 (1085)
Q Consensus 218 e~l~~lg~--~~~~~~~~~~~~l~~~L~~lL~~t~h--psl~l----s~~~l~~W~~lLr~ 270 (1085)
.++.-|-+ +++..+. .+.....++++-.||-- .+-.- -.-.+.+|..+...
T Consensus 327 RllaRlktNYQL~ELv~--v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaS 385 (1082)
T KOG1410|consen 327 RLLARLKTNYQLGELVK--VECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVAS 385 (1082)
T ss_pred HHHHHHHhhhhhHhhhc--cCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhc
Confidence 77776632 2332221 23455666666666621 11111 11235677776654
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=1.2 Score=56.75 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=57.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcc-cC-hHHHHHhhcCC--
Q 001398 73 LTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAK-YG-IIHGCGFLLSS-- 148 (1085)
Q Consensus 73 L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~-~~-ll~~L~~ll~~-- 148 (1085)
|..++|+|++...+.|+. .|.++..+|+++++.+-.=..+..-.. .. +++.|...+.+
T Consensus 383 m~~~l~~Il~~Vl~~l~D------------------phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 383 MIGNLPKILPIVLNGLND------------------PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHHHHHHHHhhcCC------------------CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC
Confidence 555677777777766552 256899999999999987555533322 22 55566444444
Q ss_pred -hhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHH
Q 001398 149 -PDFRLHACEFFKLVSPRKGPADASASEFESAMHDV 183 (1085)
Q Consensus 149 -~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i 183 (1085)
+.++.+|+-|+.....--. ++.-.+.++.+|++.
T Consensus 445 ~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~ 479 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKK 479 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHH
Confidence 6788999999987655432 112223456666643
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.97 Score=54.17 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=72.5
Q ss_pred cCChhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhh
Q 001398 146 LSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGT 225 (1085)
Q Consensus 146 l~~~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~ 225 (1085)
-++|++|.+|+.|+++++--. ...-...+|.+++.+|.- + .+++-+-.|.+|..++-|..
T Consensus 185 h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFal----a--------------nD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 185 HPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFAL----A--------------NDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred CCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHH----c--------------cCCCHHHHHHHHHHHHHHHH
Confidence 456999999999999977543 211122346666666632 1 12223577999998887765
Q ss_pred hhccccccccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 001398 226 SNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 270 (1085)
Q Consensus 226 ~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~ 270 (1085)
.....+ .+.+....+.||.-|+.+.-.|+-.+.+||.++...
T Consensus 245 vr~dkl---~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 245 VRPDKL---VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred hcHHhc---ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 555443 236778899999999998888999999999998765
No 18
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.08 E-value=2.1 Score=49.72 Aligned_cols=167 Identities=13% Similarity=0.111 Sum_probs=88.9
Q ss_pred hhHHHHHH-HHHHHhhcccCCC---CCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhh
Q 001398 311 DISGAILD-ISFQRLVKREKAP---GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINS 386 (1085)
Q Consensus 311 ~i~~~Ll~-v~~~km~~~~~~~---~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~ 386 (1085)
+.+.+|.+ +++..|...++.. ++++ .||.+.|+|+ +|+.+-|+-..++++.++...+..+...+.+.++..+..
T Consensus 183 ~~L~~Iie~VI~Pnl~~~e~D~ElfEddP-~EYIrrd~e~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~ 260 (370)
T PF08506_consen 183 PHLQQIIEKVIFPNLCLREEDEELFEDDP-EEYIRRDLEG-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQ 260 (370)
T ss_dssp HHHHHHHHHTHHHHHS--HHHHHHHHHSH-HHHHHHHSCS-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccCCCHHHHHHHccCH-HHHHHhhccc-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444443 5566666644421 1222 6788889987 678899999999999999998888888887777777763
Q ss_pred cccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCC-Ch-HHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhh
Q 001398 387 LLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGA-NS-EVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDAL 464 (1085)
Q Consensus 387 ~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~-~~-~~~~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l 464 (1085)
.... ++..|..-|++..++.|+.........+.+.. +. +..+++.+.+-.-|+ .-..+.|.++...+.++..|
T Consensus 261 y~~~--~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~F 335 (370)
T PF08506_consen 261 YASN--PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTF 335 (370)
T ss_dssp HHH---TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHH
T ss_pred HhhC--CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHH
Confidence 2111 12235677788777777744322111111111 11 222333332222222 23456788888888877776
Q ss_pred hhhhhcCCCchHHHHHHHHHhh
Q 001398 465 GPFLKYYPDAVGGVISKLFELL 486 (1085)
Q Consensus 465 ~~fl~~~~~~l~~VL~klfe~l 486 (1085)
-.-+. ++.+..++.-+...|
T Consensus 336 r~~l~--~~~l~~~~~~l~~~L 355 (370)
T PF08506_consen 336 RNQLP--KEQLLQIFPLLVNHL 355 (370)
T ss_dssp GGGS---HHHHHHHHHHHHHHT
T ss_pred HhhCC--HHHHHHHHHHHHHHh
Confidence 55332 234445555554444
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.66 E-value=3.1 Score=43.15 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=85.0
Q ss_pred CCCChhHHHHHHHHHHhhhh--hhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHh-ccCcc
Q 001398 447 KWTEPPLVVALGHYLDALGP--FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-SDKSI 523 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~--fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~-~~~~l 523 (1085)
+..+|.+|...+.++..+.. ++|.++..+..++. .+. | ...++|..|...|..+.++ .|+.+
T Consensus 35 ~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~----~l~-------D----~~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 35 RDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK----LLV-------D----ENPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH----HHc-------C----CCHHHHHHHHHHHHHHHHhccchHH
Confidence 68899999998888888765 66666555444443 232 2 2347999999999999999 88888
Q ss_pred chHHHHHHHHHHHHHHcc---ccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhh
Q 001398 524 LPHMKDIADTMAYLQREG---RLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQW 582 (1085)
Q Consensus 524 ~P~~~~i~~~i~~l~~~~---~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W 582 (1085)
..++.++...+......+ ..+..++..+|.+++-..+. ..++.++++.+..-+...+
T Consensus 100 ~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 100 YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHc
Confidence 888877765554322222 47788888999888765543 5567788888888887777
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.13 E-value=27 Score=43.24 Aligned_cols=202 Identities=18% Similarity=0.164 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHH-------HHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCC
Q 001398 351 SQYRSRLLELVKFVASNKPLVAGVKVSE-------RVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGG 423 (1085)
Q Consensus 351 ~~~R~~~~~ilr~i~~~~P~~~~~~~~~-------~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~ 423 (1085)
+++|....+-+--+....|.+....+.+ +|.+.+++ ..++-..--+..-++..+=+++..+.+... .
T Consensus 515 sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~---~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~---~ 588 (859)
T KOG1241|consen 515 SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISS---QILSLADRAQLNELQSLLCNTLQSIIRKVG---S 588 (859)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HhccHhhHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 5666666555555555566776655444 44444431 111222222333333333344343444221 1
Q ss_pred CChHHHHHHHHHHHHHHHHHhccCCCChhHHHHHH----HHHHhhhh-hhhcCCCchHHHHHHHHHhhccCCCCCCCCCc
Q 001398 424 ANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALG----HYLDALGP-FLKYYPDAVGGVISKLFELLTSLPFVFKDPST 498 (1085)
Q Consensus 424 ~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l----~~l~~l~~-fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~ 498 (1085)
+. ......+.+++-+++.. .+...+..-.+ ...+.++. |.+|-|.|.|-.+. .|. +
T Consensus 589 -~~---~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~----gL~----------n 649 (859)
T KOG1241|consen 589 -DI---REVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM----GLS----------N 649 (859)
T ss_pred -cc---hhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH----Hhh----------c
Confidence 11 22223344444444443 22332222222 22333443 77766554333222 221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhH
Q 001398 499 NSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLE 576 (1085)
Q Consensus 499 ~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss--~~~~~~q~~~l~~ll~ 576 (1085)
-....|--.|--..-++|+.....+.||.+.+.+.+-+.+++..+.+.-|-.....++=|+. ..++ ..+++.+|.
T Consensus 650 ~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F---~~Yl~~vm~ 726 (859)
T KOG1241|consen 650 FQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF---EPYLEMVMP 726 (859)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH---HHHHHHHHH
Confidence 12223555666677788999999999999999888888888877777777777777766654 2233 346666665
Q ss_pred HHHh
Q 001398 577 PLSQ 580 (1085)
Q Consensus 577 P~~~ 580 (1085)
-+.+
T Consensus 727 llq~ 730 (859)
T KOG1241|consen 727 LLQQ 730 (859)
T ss_pred HHHH
Confidence 5443
No 21
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.79 E-value=1.8 Score=40.00 Aligned_cols=38 Identities=26% Similarity=0.486 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH
Q 001398 502 RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR 539 (1085)
Q Consensus 502 ~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~ 539 (1085)
.+||..||.+|..|++...+.++||+++|.+.+..+..
T Consensus 41 ~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 41 SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37999999999999999999999999999777765554
No 22
>PTZ00429 beta-adaptin; Provisional
Probab=88.05 E-value=90 Score=39.92 Aligned_cols=161 Identities=11% Similarity=0.164 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 001398 352 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 431 (1085)
Q Consensus 352 ~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~ 431 (1085)
+|++....-|..|+...|. ..+++.+.|...++.. ..+.. ++ ..++..++.. +++ ..
T Consensus 383 ef~r~aIrAIg~lA~k~~~-~a~~cV~~Ll~ll~~~-------~~~v~-e~-i~vik~Ilrk-------yP~------~~ 439 (746)
T PTZ00429 383 VFVVEVVRAIASLAIKVDS-VAPDCANLLLQIVDRR-------PELLP-QV-VTAAKDIVRK-------YPE------LL 439 (746)
T ss_pred HHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHhcCC-------chhHH-HH-HHHHHHHHHH-------Ccc------HH
Confidence 6777777777777755554 5566677777776532 12322 32 2333333332 221 11
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHH
Q 001398 432 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 511 (1085)
Q Consensus 432 l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~ 511 (1085)
.+..++..+..-...+|..+..++|.++.|+.+.... +.+|+++.+.+. . ....||.+.-++
T Consensus 440 ---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a----~~~L~~~i~~f~---~--------E~~~VqlqlLta 501 (746)
T PTZ00429 440 ---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENG----KDIIQRFIDTIM---E--------HEQRVQLAILSA 501 (746)
T ss_pred ---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhH----HHHHHHHHhhhc---c--------CCHHHHHHHHHH
Confidence 2444444433346789999999999999999877543 445555533222 1 123689999999
Q ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHc-cccchHHHHHHHHHHH
Q 001398 512 FIRIAKTSDKSILPHMKDIADTMAYLQRE-GRLLRGEHNLLGEAFL 556 (1085)
Q Consensus 512 f~ri~~~~~~~l~P~~~~i~~~i~~l~~~-~~L~~~e~~~L~Eal~ 556 (1085)
..|+.-..|....+.+..+. ..+... .+-.-.+|..+|=.|+
T Consensus 502 ~vKlfl~~p~~~~~~l~~vL---~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 502 AVKMFLRDPQGMEPQLNRVL---ETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHhcCcHHHHHHHHHHH---HHHHhcCCChhHHHHHHHHHHHH
Confidence 99999998866555444442 222222 3445567777775554
No 23
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=87.46 E-value=39 Score=38.61 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=71.2
Q ss_pred chHHHHHHHHhhhcccchhhhHHHHHhHHHHHHhhhhccchhhhHHHHHH---HHHHHHHHhccCchHh---hHHHHHHH
Q 001398 908 LALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKD---LFSAIIRGLALESNAV---ISADLVGL 981 (1085)
Q Consensus 908 ~~~~~l~~~~~~l~w~Dt~~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~---~~~a~l~~L~~~~~~~---~~~~l~~L 981 (1085)
....++..+..++.=.+...+..++..+..++......+.+...+|.... ++.-++..|.+..|.. .|+.++.-
T Consensus 162 ~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~ 241 (319)
T PF08767_consen 162 QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSN 241 (319)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 33444445555544334445555556666666655433344444554332 3344445555554432 34444444
Q ss_pred HHHHHHh---cCCCC-----------chHHHHHHh-CCCCCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhc
Q 001398 982 CREIFIY---MCDRD-----------PAPRQVLLS-LPCITPQDLLAFEDALTKTAS-PREQKQHMRSLLVLGT 1039 (1085)
Q Consensus 982 ~~~iy~~---l~~~~-----------~~~~~vL~~-lP~i~~~~l~~f~~~l~~~~s-~K~qr~~~k~ll~~~~ 1039 (1085)
...+-+. =.|.. ....+.|.+ -|+++++.+..|-..|.+... ..+=|.+++++|-.++
T Consensus 242 Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~k 315 (319)
T PF08767_consen 242 LFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLK 315 (319)
T ss_dssp HHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 4433221 11111 124455554 599999999999999987655 5666999999988664
No 24
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=86.60 E-value=94 Score=38.62 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHH
Q 001398 434 RIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFI 513 (1085)
Q Consensus 434 ~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ 513 (1085)
+.+.++|..+..-..+|-.+......+..+|+.=. ..+++.+..-++--|.. +. -+||.+|+.+.-
T Consensus 759 ~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~---kpylpqi~stiL~rLnn-----ks------a~vRqqaadlis 824 (1172)
T KOG0213|consen 759 RLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRV---KPYLPQICSTILWRLNN-----KS------AKVRQQAADLIS 824 (1172)
T ss_pred HHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcc---ccchHHHHHHHHHHhcC-----CC------hhHHHHHHHHHH
Confidence 45778888887666666655555555555554322 23444444444333331 22 269999999999
Q ss_pred HHHHhcc----CccchHHHHH
Q 001398 514 RIAKTSD----KSILPHMKDI 530 (1085)
Q Consensus 514 ri~~~~~----~~l~P~~~~i 530 (1085)
+|+.-.. ..++.|+..|
T Consensus 825 ~la~Vlktc~ee~~m~~lGvv 845 (1172)
T KOG0213|consen 825 SLAKVLKTCGEEKLMGHLGVV 845 (1172)
T ss_pred HHHHHHHhccHHHHHHHhhHH
Confidence 9988733 3367777666
No 25
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=83.54 E-value=19 Score=42.96 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=51.7
Q ss_pred CCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHc---cccchHHH
Q 001398 472 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE---GRLLRGEH 548 (1085)
Q Consensus 472 ~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~---~~L~~~e~ 548 (1085)
.+++..+|+.+|..+.. ++. ..++ ...-...|+.....+.+.|+...+.+++..++.. .-=.++=.
T Consensus 21 ~p~~~~ll~~Lf~~i~~-~~s---~ENe-------ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEK-PGS---AENE-------YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp TCCHHHHHHHHHHHHHT-T-S---TC-H-------HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred hhhHHHHHHHHHHHHhc-CCC---ccch-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 35678999999998863 221 1233 3344567777788888999998887776665543 12345556
Q ss_pred HHHHHHHHHHhc
Q 001398 549 NLLGEAFLVMAS 560 (1085)
Q Consensus 549 ~~L~Eal~~iss 560 (1085)
..++|++++++-
T Consensus 90 HylFEsi~~lir 101 (435)
T PF03378_consen 90 HYLFESIGALIR 101 (435)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 689999988875
No 26
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=77.45 E-value=22 Score=40.53 Aligned_cols=154 Identities=13% Similarity=0.155 Sum_probs=91.3
Q ss_pred hHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHH-h-----hcCChhhh-hHHHHHHHHHcCCCCCCCCChHHH
Q 001398 104 LDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG-F-----LLSSPDFR-LHACEFFKLVSPRKGPADASASEF 176 (1085)
Q Consensus 104 ~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~-~-----ll~~~~~r-~~A~ecL~~i~sRk~~~~~~~~lf 176 (1085)
++..+..-.+-+..|+-+..|++..+-......++++-|+ . --+.|..| -+++.|+..|+.|=+. .-.+..
T Consensus 34 ~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~--~~~~~v 111 (319)
T PF08767_consen 34 TPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGE--LIQPQV 111 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGG--GCCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHH--hhhhhH
Confidence 3344444556688899988999988844444444444432 2 22457888 5678888888877432 112334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhh-HHHHHHHHHHHHhhhhhcccc-ccccccHHHHHHHHHHhhccchH
Q 001398 177 ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEF-EFAEYICESMVSLGTSNLHCI-AREDTILSMYLQQMLGYFQHFKI 254 (1085)
Q Consensus 177 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y-~F~k~l~e~l~~lg~~~~~~~-~~~~~~l~~~L~~lL~~t~hpsl 254 (1085)
..+++.+|.....+-. . |..+| ++...+=+++.++.......+ .-++..+..++..++--.+|+..
T Consensus 112 ~~I~~~vf~~Tl~MI~----------~--d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~ 179 (319)
T PF08767_consen 112 PQILEAVFECTLPMIN----------K--DFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNR 179 (319)
T ss_dssp HHHHHHHHHHHHHHHS----------S--TSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHH----------h--hhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 4566666665333321 1 11122 455555555555544332221 11344567788888888999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001398 255 ALHFQSLLFWLALMRDL 271 (1085)
Q Consensus 255 ~ls~~~l~~W~~lLr~~ 271 (1085)
.++..++..-..++.+.
T Consensus 180 ~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 180 EISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888888774
No 27
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.41 E-value=1.1e+02 Score=38.06 Aligned_cols=140 Identities=18% Similarity=0.297 Sum_probs=90.1
Q ss_pred HHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHc
Q 001398 461 LDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE 540 (1085)
Q Consensus 461 l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~ 540 (1085)
++.+++|.. |++...+-+-+|..|.+- + | -+|.+|...+.|++-+||+.+.|-|..+.+.+.
T Consensus 130 L~GLS~fvT--pdLARDLa~Dv~tLL~ss----k-p------YvRKkAIl~lykvFLkYPeAlr~~FprL~EkLe----- 191 (877)
T KOG1059|consen 130 LSGLSCIVT--PDLARDLADDVFTLLNSS----K-P------YVRKKAILLLYKVFLKYPEALRPCFPRLVEKLE----- 191 (877)
T ss_pred ecccccccC--chhhHHHHHHHHHHHhcC----c-h------HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhcc-----
Confidence 344444433 456666677777766521 1 1 479999999999999999999999998754443
Q ss_pred cccchHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHHhccCccchhhhHHHHHHH
Q 001398 541 GRLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFF 618 (1085)
Q Consensus 541 ~~L~~~e~~~L~Eal~~iss--~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~g~~~~~~~~~~~v~~~ 618 (1085)
+-.-...--|..+|+- .++++ +++.=...|-+++-+...+|.+...+..|
T Consensus 192 ----DpDp~V~SAAV~VICELArKnPk------------------------nyL~LAP~ffkllttSsNNWmLIKiiKLF 243 (877)
T KOG1059|consen 192 ----DPDPSVVSAAVSVICELARKNPQ------------------------NYLQLAPLFYKLLVTSSNNWVLIKLLKLF 243 (877)
T ss_pred ----CCCchHHHHHHHHHHHHHhhCCc------------------------ccccccHHHHHHHhccCCCeehHHHHHHH
Confidence 3333334445555543 33332 35555567777777888999999999888
Q ss_pred HHHhhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhc
Q 001398 619 ERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSI 669 (1085)
Q Consensus 619 ~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLP~ll~Llr~~h~l 669 (1085)
+.. ++.. |. +-..++|+|.-|++.-||+
T Consensus 244 ~aL-----tplE-----------PR-------LgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 244 AAL-----TPLE-----------PR-------LGKKLIEPITELMESTVAM 271 (877)
T ss_pred hhc-----cccC-----------ch-------hhhhhhhHHHHHHHhhHHH
Confidence 763 1111 11 2346788888887766553
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=73.88 E-value=2.2e+02 Score=34.77 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=86.3
Q ss_pred HHHHHHhc-cCCCChhHHHHHHHHHHhhhh------hh-hcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHH
Q 001398 438 GLLRQLLS-LKWTEPPLVVALGHYLDALGP------FL-KYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQIC 509 (1085)
Q Consensus 438 ~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~------fl-~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~ 509 (1085)
.++..+.. .+..|+..+.+.+..++.++. ++ ..+++.+..++.+++......+ .++|.+|-
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~-----------~~lk~r~l 358 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS-----------TELKLRAL 358 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc-----------hHHHHHHH
Confidence 34444443 278899999888888888886 34 4556778889999988765211 14677888
Q ss_pred HHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHhHHHHhhhChHhHH
Q 001398 510 TSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAG-IQQQQEVLAWLLEPLSQQWMQLEWQ 588 (1085)
Q Consensus 510 ~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~-~~~q~~~l~~ll~P~~~~W~~~~~~ 588 (1085)
.+|-.|-..... +.-+++.......+.. ++...... .+..+. ..+ ++-|..-+.-+-+-....|...++
T Consensus 359 ~al~~il~~~~~---~~~~~i~~~~~~w~~~--~~~~~~~~---~l~~~~-~qPF~elr~a~~~~l~~l~~~~Wg~~~i- 428 (503)
T PF10508_consen 359 HALASILTSGTD---RQDNDILSITESWYES--LSGSPLSN---LLMSLL-KQPFPELRCAAYRLLQALAAQPWGQREI- 428 (503)
T ss_pred HHHHHHHhcCCC---CchHHHHHHHHHHHHH--hcCCchHH---HHHHHh-cCCchHHHHHHHHHHHHHhcCHHHHHHH-
Confidence 888777544322 2233333222222221 22222221 122222 445 567888888888888888976654
Q ss_pred hhhcCChHHHHHhccCcc
Q 001398 589 NNYLSEPLGLVRLCSDTS 606 (1085)
Q Consensus 589 ~~~l~~~~~f~~~~g~~~ 606 (1085)
.+-.||++|+-|++
T Consensus 429 ----~~~~gfie~lldr~ 442 (503)
T PF10508_consen 429 ----CSSPGFIEYLLDRS 442 (503)
T ss_pred ----HhCccHHhhhcCCC
Confidence 34578999997543
No 29
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.79 E-value=1.9e+02 Score=38.32 Aligned_cols=132 Identities=20% Similarity=0.101 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchH-H
Q 001398 449 TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH-M 527 (1085)
Q Consensus 449 ~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~-~ 527 (1085)
+.|.++-..+++++....+--...+...++=-|-|..-...+....++..+..+.++.+-+..++.|+|.--....|. +
T Consensus 57 ~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i 136 (1041)
T KOG2020|consen 57 TNPILKYFALQLLENVIKFRWNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFI 136 (1041)
T ss_pred CCchhheeeHHHHHHHHHHhcccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhh
Confidence 455555555666666665432221222233222222111112211222255788999999999999999965555554 5
Q ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001398 528 KDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 580 (1085)
Q Consensus 528 ~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~ 580 (1085)
..+.+....-...+.++-..-..|.|-+...++....+++...+...+....+
T Consensus 137 ~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~ 189 (1041)
T KOG2020|consen 137 PDLAQSSKTSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQ 189 (1041)
T ss_pred hhHHHHhhcCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHH
Confidence 66544443111112344444457777777776655567777777777775443
No 30
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=64.44 E-value=1.1e+02 Score=35.79 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc---CCCH-------HHHHH
Q 001398 500 SARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS---AAGI-------QQQQE 569 (1085)
Q Consensus 500 ~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss---~~~~-------~~q~~ 569 (1085)
...+++..+|..+.+.+++|.+.+.||++.+++.+-+++.+-............++-.+++ .... +.=.+
T Consensus 108 ~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~ 187 (370)
T PF08506_consen 108 LLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQ 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHH
Confidence 4778999999999999999999999999999888888886522223333444444444433 1111 11134
Q ss_pred HHHHHhHHHHhhhChHhHHhhhcCChHHHHHhc
Q 001398 570 VLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLC 602 (1085)
Q Consensus 570 ~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~ 602 (1085)
+++.++=|... ..+.+.+- .-.+|.++++--
T Consensus 188 Iie~VI~Pnl~-~~e~D~El-fEddP~EYIrrd 218 (370)
T PF08506_consen 188 IIEKVIFPNLC-LREEDEEL-FEDDPEEYIRRD 218 (370)
T ss_dssp HHHHTHHHHHS---HHHHHH-HHHSHHHHHHHH
T ss_pred HHHHhccCccC-CCHHHHHH-HccCHHHHHHhh
Confidence 45555555542 23333332 446777777653
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.46 E-value=8.7 Score=27.22 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.8
Q ss_pred hHHHHHhhcCC--hhhhhHHHHHHHHHcC
Q 001398 138 IIHGCGFLLSS--PDFRLHACEFFKLVSP 164 (1085)
Q Consensus 138 ll~~L~~ll~~--~~~r~~A~ecL~~i~s 164 (1085)
+++.+..+++| +++|..|+.||..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35666555554 8999999999998863
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=62.84 E-value=4.5e+02 Score=34.11 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhccc----cCCcchhcccChHHHH-Hhh-cCChhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHH
Q 001398 113 TVTATLNAINAYAE----WAPLPDLAKYGIIHGC-GFL-LSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQI 186 (1085)
Q Consensus 113 ~v~~aL~tl~~yl~----Wip~~~i~~~~ll~~L-~~l-l~~~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~ 186 (1085)
+...+|..++.|+. -+|- +..+++..+ +.+ .+..-+|.-|+-||..+++-. + ...|..++..+...
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~--~---~~ly~~li~~Ll~~ 220 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC--N---RDLYVELIEHLLKG 220 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc--C---HHHHHHHHHHHHhc
Confidence 44455555555544 2222 334455554 333 334678999999999888654 2 23454444433211
Q ss_pred HHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhh---ccchHHHHHHHHHH
Q 001398 187 LMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYF---QHFKIALHFQSLLF 263 (1085)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t---~hpsl~ls~~~l~~ 263 (1085)
+ .++ .-.+.-..++++++.+..+-|..... .+....+++..|+ .-...++...|++.
T Consensus 221 -----------L-~~~-~q~~~~rt~Iq~l~~i~r~ag~r~~~-------h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 221 -----------L-SNR-TQMSATRTYIQCLAAICRQAGHRFGS-------HLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred -----------c-CCC-CchHHHHHHHHHHHHHHHHhcchhhc-------ccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 1 111 22233345777777776666655444 3345566677777 66778899999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCC----CC-C----
Q 001398 264 WLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAP----GT-Q---- 334 (1085)
Q Consensus 264 W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~Ll~v~~~km~~~~~~~----~~-~---- 334 (1085)
...|++.. ++ .+. .+++++...+.+.+.+..... ++ +
T Consensus 281 le~fl~rc---p~--------------------------ei~-----p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 281 LESFLRRC---PK--------------------------EIL-----PHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred HHHHHHhC---hh--------------------------hhc-----ccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 88888862 00 011 567778888888888854421 11 0
Q ss_pred CCcccc--ccccCCcchH-HHHHHHHHHHHHHHhccC
Q 001398 335 GPLELW--SDDFEGKGDF-SQYRSRLLELVKFVASNK 368 (1085)
Q Consensus 335 ~~~e~~--~~dfd~~~ef-~~~R~~~~~ilr~i~~~~ 368 (1085)
+..+.. +++|.||+|- |-.||-.-.++..+..-+
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 001111 2455555554 788887777666554433
No 33
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.02 E-value=5.9e+02 Score=34.88 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=39.5
Q ss_pred chHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 001398 474 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTM 534 (1085)
Q Consensus 474 ~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i 534 (1085)
-...++.-++-++.. ++. ...|..||+-+..++++|++-+++.+.||+..++-.+
T Consensus 1123 ~~~~~l~~iLPfLl~-~gi-----ms~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~l 1177 (1702)
T KOG0915|consen 1123 KGKEALDIILPFLLD-EGI-----MSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLL 1177 (1702)
T ss_pred cHHHHHHHHHHHHhc-cCc-----ccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHH
Confidence 344455555444432 231 1368899999999999999999999999999874333
No 34
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=60.40 E-value=74 Score=34.70 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccC-CCCCCCCCchHHHHHHHHHH
Q 001398 431 SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQIC 509 (1085)
Q Consensus 431 ~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~-p~~~~~~~~~~~~~vR~~A~ 509 (1085)
.+...-..++..|+..=..++.....++-+++.++..+|.+|.++..|+..+.++=... |........-.++.||+.-=
T Consensus 107 ~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk 186 (239)
T PF11935_consen 107 QLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLK 186 (239)
T ss_dssp HHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHH
Confidence 34444556666666644444455566677889999999999999999998876643211 11011223446778888888
Q ss_pred HHHHHHHHhccCccchHHHHHHHHHH
Q 001398 510 TSFIRIAKTSDKSILPHMKDIADTMA 535 (1085)
Q Consensus 510 ~~f~ri~~~~~~~l~P~~~~i~~~i~ 535 (1085)
..|+.+-+..+.. ||-+.|.+.+.
T Consensus 187 ~~l~~llk~~~~~--~~~~~i~~~L~ 210 (239)
T PF11935_consen 187 IFLLHLLKHPASS--PFQGRITQALT 210 (239)
T ss_dssp HHHHHHHTSGGGG--GGHHHHHHHHH
T ss_pred HHHHHHHCCCCch--hhHHHHHHHHH
Confidence 8888877754333 88888766655
No 35
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.44 E-value=4.7e+02 Score=32.88 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=75.7
Q ss_pred cchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhh--hHHHH
Q 001398 6 SDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLP--EILPL 83 (1085)
Q Consensus 6 la~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p--~I~~~ 83 (1085)
++.|+.|++++. |+++-.+-|.+..+...+.+. -+|+=+..|+-- ..-++..-++.++..+++-+. .-..+
T Consensus 201 AV~VICELArKn-PknyL~LAP~ffkllttSsNN--WmLIKiiKLF~a----LtplEPRLgKKLieplt~li~sT~AmSL 273 (877)
T KOG1059|consen 201 AVSVICELARKN-PQNYLQLAPLFYKLLVTSSNN--WVLIKLLKLFAA----LTPLEPRLGKKLIEPITELMESTVAMSL 273 (877)
T ss_pred HHHHHHHHHhhC-CcccccccHHHHHHHhccCCC--eehHHHHHHHhh----ccccCchhhhhhhhHHHHHHHhhHHHHH
Confidence 345777777553 777766666666554333110 012112222211 222445556677777777543 33344
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHH--------------------H
Q 001398 84 LYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC--------------------G 143 (1085)
Q Consensus 84 ~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L--------------------~ 143 (1085)
+|+-...-+..-+ +...++|...+..|++-|..|++=-+.+. .++.++ .
T Consensus 274 lYECvNTVVa~s~-------s~g~~d~~asiqLCvqKLr~fiedsDqNL----KYlgLlam~KI~ktHp~~Vqa~kdlIl 342 (877)
T KOG1059|consen 274 LYECVNTVVAVSM-------SSGMSDHSASIQLCVQKLRIFIEDSDQNL----KYLGLLAMSKILKTHPKAVQAHKDLIL 342 (877)
T ss_pred HHHHHHHheeehh-------ccCCCCcHHHHHHHHHHHhhhhhcCCccH----HHHHHHHHHHHhhhCHHHHHHhHHHHH
Confidence 4432221111000 11223466788888888888887555543 122222 1
Q ss_pred hhc--CChhhhhHHHHHHHHHcCCC
Q 001398 144 FLL--SSPDFRLHACEFFKLVSPRK 166 (1085)
Q Consensus 144 ~ll--~~~~~r~~A~ecL~~i~sRk 166 (1085)
..+ .|+.+|..|+|-|..+++++
T Consensus 343 rcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 343 RCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred HHhccCCchhHHHHHHHHHHHhhhh
Confidence 122 35899999999999999877
No 36
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=54.91 E-value=4e+02 Score=31.05 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=63.6
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCCCC-chHHHHHHhCCCCCHHHHHH
Q 001398 935 CSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRD-PAPRQVLLSLPCITPQDLLA 1013 (1085)
Q Consensus 935 ~~~l~~~~~~~~~~~l~~~~~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~~~-~~~~~vL~~lP~i~~~~l~~ 1013 (1085)
..++.+..+..++..-..-.+.++++.++++-+...-.+....+-+.++..-..+...| ...-++|.++-.++++-|..
T Consensus 258 lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~ 337 (373)
T PF14911_consen 258 LPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVIS 337 (373)
T ss_pred hHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHH
Confidence 34455555545545566688999999999887744434444445555555443333333 34577888888788887766
Q ss_pred HHHHHhc----------CCChHHHHHHHHHHHH
Q 001398 1014 FEDALTK----------TASPREQKQHMRSLLV 1036 (1085)
Q Consensus 1014 f~~~l~~----------~~s~K~qr~~~k~ll~ 1036 (1085)
.-..+.. ...+..+|....+|+.
T Consensus 338 Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 338 LIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 6666543 2345777877777765
No 37
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=53.83 E-value=2.5e+02 Score=34.78 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=75.5
Q ss_pred HHHHHHHHhccCC--CChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCC---CCCCCchHHHHHHHHHHH
Q 001398 436 FEGLLRQLLSLKW--TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFV---FKDPSTNSARHARLQICT 510 (1085)
Q Consensus 436 l~~Ll~~ll~~~~--~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~---~~~~~~~~~~~vR~~A~~ 510 (1085)
.+.|++.+++++| .++.++...+..+.. ....++.++..|+.++.+.+...+.. ..+......+.+..++..
T Consensus 71 ~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~---Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~ 147 (563)
T PF05327_consen 71 CKQLVEAILSLNWLGRDEDFVEAYIQFLIN---LVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHD 147 (563)
T ss_dssp CHHHHHHHHT-TGGGS-HHHHHHHHHHHHH---HHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHH
Confidence 3457777887777 566665554443333 34567889999999998876621110 011112234457789999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001398 511 SFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 580 (1085)
Q Consensus 511 ~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~ 580 (1085)
+|.+|.+..|....-....+.+.+. ...-+...+..+...++-++.-. ++-+...++-+++-+++
T Consensus 148 ~L~~Il~lvP~s~~~L~~~l~~~FP----~~~~~~~~~~~Yv~NlL~l~~Y~-P~L~~~Il~lIi~rLi~ 212 (563)
T PF05327_consen 148 ALQKILRLVPTSPSFLIPILVQNFP----HKRKSKDEHVNYVRNLLRLTEYC-PELRSDILSLIIERLIK 212 (563)
T ss_dssp HHHHHHHH-GGGHHHHHHHHHHTS------TTS-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCc----CCCCChHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHH
Confidence 9999999988776555555443333 12344566666777777777633 66677788877776654
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=49.59 E-value=3.6e+02 Score=33.12 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHH
Q 001398 434 RIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFI 513 (1085)
Q Consensus 434 ~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ 513 (1085)
..+..+|..+..-..++-++..+...+++.+.- +. ..+++.++.-++..|.+.| | +||.+|+.+.-
T Consensus 564 rl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~--r~-kp~l~~ivStiL~~L~~k~-----p------~vR~~aadl~~ 629 (975)
T COG5181 564 RLYDSILNAFQEQDTTVGLILPCFSTVLVSLEF--RG-KPHLSMIVSTILKLLRSKP-----P------DVRIRAADLMG 629 (975)
T ss_pred HHHHHHHHHHHhccccccEEEecccceeeehhh--cc-CcchHHHHHHHHHHhcCCC-----c------cHHHHHHHHHH
Confidence 457777877776666666665554444443331 22 2456666666666565322 2 57888887766
Q ss_pred HHHHh---cc-CccchHHHHH
Q 001398 514 RIAKT---SD-KSILPHMKDI 530 (1085)
Q Consensus 514 ri~~~---~~-~~l~P~~~~i 530 (1085)
.|++. +. ..++.++..|
T Consensus 630 sl~~vlk~c~e~~~l~klg~i 650 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNI 650 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHH
Confidence 66554 22 3455555554
No 39
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=49.36 E-value=70 Score=40.65 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=62.2
Q ss_pred chhHHHHhhhhcccchhhHHHHHHHhhcCC-hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHHHHH
Q 001398 7 DSCPCRRVRREGINLWQELFPSLVSLSSKG-PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLY 85 (1085)
Q Consensus 7 a~vlveivkrewp~~Wp~fl~eL~~l~~~~-~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~~~~ 85 (1085)
|.++.-|+.-++|..||+++++|+++-+.+ ....+.+++++.-+.-... +-.|-+++ +-+-.|.+..+++
T Consensus 106 a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r------~l~Rsd~l---f~ei~p~L~~~l~ 176 (947)
T COG5657 106 ALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR------RLFRSDAL---FLEIAPVLLSILC 176 (947)
T ss_pred HHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh------hhhccHHH---HHHHHHHHHHHHH
Confidence 677888999999999999999999988764 3555777777665442221 11122222 3334677777777
Q ss_pred HHHHHHHHHH-HHHhhhhchHHHhhHHHHHHHHHHHHHhccc
Q 001398 86 SLLERHFGAA-LSEVGRQQLDVAKQHAATVTATLNAINAYAE 126 (1085)
Q Consensus 86 ~~Le~~~~~~-~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~ 126 (1085)
+++-..+..+ +.. + ....--..-+.||+.+..|.+
T Consensus 177 pfl~~~~~~~s~~~---~---~~~~llslfqv~L~~~r~~~~ 212 (947)
T COG5657 177 PFLFSSAYFWSMSE---N---LDESLLSLFQVCLKLIRRYYD 212 (947)
T ss_pred HHHHhccchhHHhh---c---chhhHHHHHHHHHHHHHHHHH
Confidence 7665443221 100 0 011112345557777777754
No 40
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=48.02 E-value=3.2e+02 Score=27.85 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhcc-C-
Q 001398 370 LVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSL-K- 447 (1085)
Q Consensus 370 ~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~-~- 447 (1085)
....+....++.+.+.+. ..+-.|.+... +.+++..+. . +.+.+....|++.+++. +
T Consensus 20 ~~~l~~l~~ri~~LL~s~-------~~~~rw~G~~L-l~~~~~~~~----------~---e~l~~~~~~W~~~Ll~~L~~ 78 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSK-------SAYSRWAGLCL-LKVTVEQCS----------W---EILLSHGSQWLRALLSILEK 78 (165)
T ss_pred HHHHHHHHHHHHHHhCCC-------ChhhHHHHHHH-HHHHHHHhh----------H---HHHHHHHHHHHHHHHHHHcC
Confidence 456667777788877653 23567766644 333333320 0 22233445555555542 2
Q ss_pred CCChhHHHHHHHHHHhhhhhhhcCCCchHHH----HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCcc
Q 001398 448 WTEPPLVVALGHYLDALGPFLKYYPDAVGGV----ISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI 523 (1085)
Q Consensus 448 ~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~V----L~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l 523 (1085)
...+.+....+.++..+.......|++...+ +.++...+..+.. + ..+...|...|.++-+.||..+
T Consensus 79 ~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~---~------~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 79 PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQ---D------SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHh---c------cccHHHHHHHHHHHHHHCCccc
Confidence 3444567777777888777777776654332 3333333221101 0 1345689999999999999999
Q ss_pred chHHHHHHHHHHH
Q 001398 524 LPHMKDIADTMAY 536 (1085)
Q Consensus 524 ~P~~~~i~~~i~~ 536 (1085)
-||...|-..+-.
T Consensus 150 rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 150 RPFANKIESALLS 162 (165)
T ss_pred cchHHHHHHHHHH
Confidence 9999997555443
No 41
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=47.48 E-value=79 Score=32.47 Aligned_cols=104 Identities=17% Similarity=0.298 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhcCCcccccCCCchHHHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHH
Q 001398 738 GVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHC 817 (1085)
Q Consensus 738 ~~re~~y~ilg~~~~l~~~fy~~~~l~~l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~l~~~~ 817 (1085)
.+|-+||..+..+- +..+|.+ ++..+.+.+..++.- ++..|.+-+..+.-++..||...... +..+..|+=..+
T Consensus 42 elRK~ayE~lytlL--d~~~~~~-~~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~-Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLL--DTCLSRI-DISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQR-LDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHH--HSTCSSS--HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHC-CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHhC-CHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHh
Confidence 35555555555542 1225554 355566777666655 77788888888999999999887665 666777776666
Q ss_pred HHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001398 818 QQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTM 861 (1085)
Q Consensus 818 ~~rL~~~W~~i~~~~~~~~~~~E~~eE~llr~LTr~~~~ll~~~ 861 (1085)
..++. ++..++|+=. ..++-|.+++.+..+
T Consensus 116 ~~k~k-----------~~AvkQE~Ek---~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLK-----------ENAVKQEIEK---QQELIRSVLRAVKAL 145 (169)
T ss_dssp H---------------TTS-HHHHHH---HHHHHHHHHHHHHHH
T ss_pred hccCC-----------CCcccccHHH---HHHHHHHHHHHHHHH
Confidence 66654 3444555311 134557777777766
No 42
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=46.77 E-value=2.3e+02 Score=35.59 Aligned_cols=130 Identities=17% Similarity=0.253 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCch------------HHHHHHHHHhhccCCCCCCCCCchHH
Q 001398 434 RIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAV------------GGVISKLFELLTSLPFVFKDPSTNSA 501 (1085)
Q Consensus 434 ~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l------------~~VL~klfe~l~~~p~~~~~~~~~~~ 501 (1085)
...-++++..++.+...|.........+.+++.+.|-.+.-+ ...++-+|-.+.+.+ + .
T Consensus 640 ~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~---k------~ 710 (980)
T KOG2021|consen 640 DQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFN---K------F 710 (980)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhcc---c------c
Confidence 356677788888888888644333344667777665543222 122333333333222 2 2
Q ss_pred HHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc-CCCHH-HHHHHHHHHhHHHH
Q 001398 502 RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS-AAGIQ-QQQEVLAWLLEPLS 579 (1085)
Q Consensus 502 ~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss-~~~~~-~q~~~l~~ll~P~~ 579 (1085)
.++|...-.+|.|+.-.-...++||+....++ +++ +.|-.-+.++++.+++ -..+. +--++++..+.|+.
T Consensus 711 E~iRsavrft~hRmI~~lg~~vlPfipklie~---lL~-----s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll 782 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPILGNKVLPFIPKLIEL---LLS-----STDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLL 782 (980)
T ss_pred chhHHHHHHHHHHHHHhcchhhhcchHHHHHH---HHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999999999987443 344 3444466777777765 22222 33556666666665
Q ss_pred h
Q 001398 580 Q 580 (1085)
Q Consensus 580 ~ 580 (1085)
.
T Consensus 783 ~ 783 (980)
T KOG2021|consen 783 N 783 (980)
T ss_pred H
Confidence 3
No 43
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=46.41 E-value=75 Score=36.06 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHH---H--hCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001398 973 VISADLVGLCREIFIYMCDRDPAPRQVL---L--SLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1041 (1085)
Q Consensus 973 ~~~~~l~~L~~~iy~~l~~~~~~~~~vL---~--~lP~i~~~~l~~f~~~l~~~~s~K~qr~~~k~ll~~~~g~ 1041 (1085)
+.......++...|..+|......-.++ . .+|+.+.+++..+.+++.-..++++..+.|.+++..+.+.
T Consensus 221 ~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~ 294 (311)
T cd05167 221 TPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEK 294 (311)
T ss_pred hhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3445677788888888887776554443 2 5899999999999999988889999999999999988875
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=41.03 E-value=3.6e+02 Score=31.97 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred cccCCcchhcccC-----hHHHHHhhcCChhhhhHHHHHHHHHcCCCCCC-----CCC-hHHH-HHHHHHHHHHHHHHHH
Q 001398 125 AEWAPLPDLAKYG-----IIHGCGFLLSSPDFRLHACEFFKLVSPRKGPA-----DAS-ASEF-ESAMHDVFQILMKVSG 192 (1085)
Q Consensus 125 l~Wip~~~i~~~~-----ll~~L~~ll~~~~~r~~A~ecL~~i~sRk~~~-----~~~-~~lf-~~~l~~i~~~~~~~~~ 192 (1085)
+-|+--+.+...+ +++.+..+++++++...|++++..++.-.... ... ..+| +.+-..++-.++..
T Consensus 254 ~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~-- 331 (415)
T PF12460_consen 254 LIWITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEG-- 331 (415)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHH--
Confidence 4488888885543 45555678888999999999999998762100 001 1233 22222222221111
Q ss_pred HHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 001398 193 EFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 270 (1085)
Q Consensus 193 ~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~ 270 (1085)
|. +..++....|+..++-++..+....+. ..+...++++++-+..|+..+-..++..-..++++
T Consensus 332 --~~------~~~~~~k~~yL~ALs~ll~~vP~~vl~------~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 332 --FK------EADDEIKSNYLTALSHLLKNVPKSVLL------PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred --Hh------hcChhhHHHHHHHHHHHHhhCCHHHHH------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 11 111335567888888887766644432 25778999999999999888888888877766664
No 45
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=9.1e+02 Score=30.67 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=36.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHH
Q 001398 359 ELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVS 412 (1085)
Q Consensus 359 ~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~ 412 (1085)
..+..+...++..+++-+..-+...+++....+-+-.--.+-|+..+++-++.+
T Consensus 392 ~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 392 FFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred HHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence 455667788999999888888888886543222221224577778787777766
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=37.02 E-value=8.3e+02 Score=29.52 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 001398 352 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 431 (1085)
Q Consensus 352 ~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~ 431 (1085)
+||+.....+..++...|... +|+.+.+-..+... ..+..-+....+..- +..... ....
T Consensus 355 ~~~~~~i~~I~~la~~~~~~~-~~~v~~l~~ll~~~-------~~~~~~~~~~~i~~l-l~~~~~-----------~~~~ 414 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPPDA-EWYVDTLLKLLEIS-------GDYVSNEIINVIRDL-LSNNPE-----------LREK 414 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGSSH-HHHHHHHHHHHHCT-------GGGCHCHHHHHHHHH-HHHSTT-----------THHH
T ss_pred hhhhhHHHHHHHHHhccCchH-HHHHHHHHHhhhhc-------cccccchHHHHHHHH-hhcChh-----------hhHH
Confidence 477777777777777665543 34445555555421 012222222222222 222111 1122
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHH
Q 001398 432 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 511 (1085)
Q Consensus 432 l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~ 511 (1085)
.+..+++.+.. ..+|.++...+|++|.|+...... +..+.++..+.+.+. . ....+|..+.++
T Consensus 415 ---~l~~L~~~l~~--~~~~~~~~~~~wilGEy~~~~~~~-~~~~~~~~~l~~~~~---~--------~~~~vk~~ilt~ 477 (526)
T PF01602_consen 415 ---ILKKLIELLED--ISSPEALAAAIWILGEYGELIENT-ESAPDILRSLIENFI---E--------ESPEVKLQILTA 477 (526)
T ss_dssp ---HHHHHHHHHTS--SSSHHHHHHHHHHHHHHCHHHTTT-THHHHHHHHHHHHHT---T--------SHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH--hhHHHHHHHHHhhhcccCCccccc-ccHHHHHHHHHHhhc---c--------ccHHHHHHHHHH
Confidence 24455555543 788889999999999999887761 134444444433322 1 123689999999
Q ss_pred HHHHHHhccC-ccchHHHHHHHHHHHHHH--ccccchHHHHHHHHHHH
Q 001398 512 FIRIAKTSDK-SILPHMKDIADTMAYLQR--EGRLLRGEHNLLGEAFL 556 (1085)
Q Consensus 512 f~ri~~~~~~-~l~P~~~~i~~~i~~l~~--~~~L~~~e~~~L~Eal~ 556 (1085)
+.|+....|. ...+ .+.+.+.++.. +.+..-.+|..+|-.++
T Consensus 478 ~~Kl~~~~~~~~~~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 478 LAKLFKRNPENEVQN---EILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHSCSTTHHH---HHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCchhhHH---HHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 9999999875 3444 33333444444 33566677777765554
No 47
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.72 E-value=3.6e+02 Score=30.14 Aligned_cols=145 Identities=12% Similarity=0.159 Sum_probs=77.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcch---hcccChHHHH----H--
Q 001398 73 LTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPD---LAKYGIIHGC----G-- 143 (1085)
Q Consensus 73 L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~---i~~~~ll~~L----~-- 143 (1085)
+.+..|-|.+.+..+++.+. ...-..+++++.++++=++... +..+|+.+.+ .
T Consensus 113 i~~~~~liiP~iL~llDD~~------------------~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~ 174 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYS------------------PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPC 174 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCC------------------HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHH
Confidence 33445555666665555442 2355677788888888888888 7778755543 2
Q ss_pred -hhcC-------ChhhhhHHHHHHHHHcCCCC--CCCCChHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCChhhhHH
Q 001398 144 -FLLS-------SPDFRLHACEFFKLVSPRKG--PADASASEFESAMHD-VFQILMKVSGEFLYRSGTSAGAIDESEFEF 212 (1085)
Q Consensus 144 -~ll~-------~~~~r~~A~ecL~~i~sRk~--~~~~~~~lf~~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F 212 (1085)
.+++ +..+-..|-.||..++.... ....+...++..+.. |++. +.... ...-.+--.-+
T Consensus 175 L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~-------~~~~~---~~~~~~l~~~l 244 (282)
T PF10521_consen 175 LYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSS-------MEHES---SFSYPRLRTVL 244 (282)
T ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhh-------ceecc---ccCchhHHHHH
Confidence 2222 24566888899998866421 112344455554444 4332 10000 00011122346
Q ss_pred HHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhhccc
Q 001398 213 AEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHF 252 (1085)
Q Consensus 213 ~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hp 252 (1085)
++.+..++..+|...+.+ +...++.+.++...|
T Consensus 245 l~~l~~~i~~lGi~~~~h-------L~rii~~l~~~l~np 277 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVKH-------LQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHHhccHHHHH-------HHHHHHHHHHHhcCC
Confidence 777777777777655542 334444555444444
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=34.74 E-value=24 Score=28.48 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHc
Q 001398 503 HARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE 540 (1085)
Q Consensus 503 ~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~ 540 (1085)
.||..|+..|-+++...+..+.|++..++..+..++.+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d 39 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD 39 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC
Confidence 48999999999999999999999999998777766654
No 49
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=30.54 E-value=64 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhhhhhhhcCCC----chHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 001398 451 PPLVVALGHYLDALGPFLKYYPD----AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRI 515 (1085)
Q Consensus 451 p~l~s~~l~~l~~l~~fl~~~~~----~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri 515 (1085)
|.++..-++.++. +....++ +++.++..++..|. |+ ...||..||.+|-+|
T Consensus 1 p~vR~~A~~aLg~---l~~~~~~~~~~~~~~~~~~L~~~L~-------d~----~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGR---LAEGCPELLQPYLPELLPALIPLLQ-------DD----DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHC---TTTTTHHHHHHHHHHHHHHHHHHTT-------SS----SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhh---HhcccHHHHHHHHHHHHHHHHHHHc-------CC----CHHHHHHHHHHHhcC
Confidence 4456665666654 3333333 44455555554442 21 127899999988654
No 50
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=29.01 E-value=3.5e+02 Score=25.37 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=45.3
Q ss_pred HHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc-cCccchHHHHHHHHHHHHH
Q 001398 460 YLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS-DKSILPHMKDIADTMAYLQ 538 (1085)
Q Consensus 460 ~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~-~~~l~P~~~~i~~~i~~l~ 538 (1085)
++..+..+.+...+.+..+..|+...|.+. .. ..++|..|+....-+.+.- ++.+.|+++++.-.+-+.+
T Consensus 35 ~l~si~~lI~~~~~~i~~~~pQI~a~L~sa---l~------~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 35 ALRSIEELIKLGGSHISSARPQIMACLQSA---LE------IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---hC------ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 445555555555566777777777766531 11 1257778888888877773 5778888888865555443
No 51
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=28.61 E-value=2e+02 Score=32.41 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCchHHHHH-----HhCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001398 974 ISADLVGLCREIFIYMCDRDPAPRQVL-----LSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1041 (1085)
Q Consensus 974 ~~~~l~~L~~~iy~~l~~~~~~~~~vL-----~~lP~i~~~~l~~f~~~l~~~~s~K~qr~~~k~ll~~~~g~ 1041 (1085)
.......+|...|..+|......-.++ ..+|+.+.+++..+.+++.=..|+.+-+..|.++++...+.
T Consensus 200 ~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~ 272 (289)
T cd00893 200 DFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNS 272 (289)
T ss_pred hHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhh
Confidence 345577788888888887776665554 35799999999999999987889999999999999988874
No 52
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=28.51 E-value=1.8e+02 Score=33.61 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHH-----HhCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001398 973 VISADLVGLCREIFIYMCDRDPAPRQVL-----LSLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1041 (1085)
Q Consensus 973 ~~~~~l~~L~~~iy~~l~~~~~~~~~vL-----~~lP~i~-~~~l~~f~~~l~~~~s~K~qr~~~k~ll~~~~g~ 1041 (1085)
+.......+|...|..+|......-.++ ..+|+++ .+++..+.+++.-..++.+....|++++....+.
T Consensus 265 ~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s 339 (353)
T cd05166 265 QRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATIQFTKMIQSSLGS 339 (353)
T ss_pred chHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 4556677788888888887776665543 3589988 7799999999988889999999999999988754
No 53
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=26.20 E-value=2.2e+02 Score=33.04 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=58.3
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCchHHHHH---H--hCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCchHh
Q 001398 972 AVISADLVGLCREIFIYMCDRDPAPRQVL---L--SLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKA 1045 (1085)
Q Consensus 972 ~~~~~~l~~L~~~iy~~l~~~~~~~~~vL---~--~lP~i~-~~~l~~f~~~l~~~~s~K~qr~~~k~ll~~~~g~~l~~ 1045 (1085)
.+.....-.+|...|..+|......-.++ . .+|+++ .++++.+.+++.-..|+.+....|++++..+...+.+.
T Consensus 271 s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~ 350 (361)
T cd05174 271 SEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKT 350 (361)
T ss_pred CchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchh
Confidence 34455677888888888887776655543 3 689886 47899999999888899999999999999888766543
No 54
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.14 E-value=1.3e+03 Score=28.39 Aligned_cols=233 Identities=13% Similarity=0.111 Sum_probs=109.8
Q ss_pred HHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccC-C--c---hHHHHHHHHHHHHhhhhhHHHH
Q 001398 10 PCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNE-D--L---EGDRRRLLLRGLTQSLPEILPL 83 (1085)
Q Consensus 10 lveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~-d--l---~~~rr~~L~~~L~~~~p~I~~~ 83 (1085)
++-++|.+-+...+..+.-|+.++.-+..........|-+|.-|++...+ + + ..--|..|. ..+......+--
T Consensus 111 iaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy-~~n~~tR~flv~ 189 (675)
T KOG0212|consen 111 IAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIY-VINPMTRQFLVS 189 (675)
T ss_pred HHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHh-cCCchHHHHHHH
Confidence 56677788888889999999998876654444455556666666654222 1 1 111111110 011111111222
Q ss_pred HHHHHHHH----HHHHHH-------HhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchh-cccC-hHHHHH--hhcCC
Q 001398 84 LYSLLERH----FGAALS-------EVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL-AKYG-IIHGCG--FLLSS 148 (1085)
Q Consensus 84 ~~~~Le~~----~~~~~~-------~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i-~~~~-ll~~L~--~ll~~ 148 (1085)
|..+|... +-.|+. ...+.++ .++...|=.++..|+.=|..+.- ++.+ .++++. .-.++
T Consensus 190 Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s------~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~ 263 (675)
T KOG0212|consen 190 WLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS------DEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE 263 (675)
T ss_pred HHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc
Confidence 22222111 000110 0111111 12333333344445443333322 2433 788874 44566
Q ss_pred hhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhc
Q 001398 149 PDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNL 228 (1085)
Q Consensus 149 ~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~ 228 (1085)
+.+|..|+.-+.+++.-.++ +-.+....++..++ . .-.-+|.. =++..+.+++.+....+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~--~~l~~~s~il~~iL-----------p-----c~s~~e~~--~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGR--DLLLYLSGILTAIL-----------P-----CLSDTEEM--SIKEYAQMVNGLLLKLV 323 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCc--chhhhhhhhhhhcc-----------c-----CCCCCccc--cHHHHHHHHHHHHHHHH
Confidence 89999999999999987632 21221122222211 0 00011111 22333333333322222
Q ss_pred cccc-cccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 001398 229 HCIA-REDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 270 (1085)
Q Consensus 229 ~~~~-~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~ 270 (1085)
..-. ..+-++...++.+.+++.|........++. |...+-+
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~-Wi~~l~~ 365 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLN-WIILLYH 365 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHh
Confidence 1100 011256678888899999998888777766 6665554
No 55
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.86 E-value=1.6e+03 Score=28.67 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHH
Q 001398 237 ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAI 316 (1085)
Q Consensus 237 ~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~L 316 (1085)
.++.+.-=+|+++.-|.+++.+-|+++-..+..+. -+.++
T Consensus 314 il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------------------------------------Nvedi 353 (948)
T KOG1058|consen 314 ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------------------------------------NVEDI 353 (948)
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------------------------------------cHHHH
Confidence 45555556778888899999999988755554430 01122
Q ss_pred HHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 001398 317 LDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAI 383 (1085)
Q Consensus 317 l~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~ 383 (1085)
..+...+..+-... +.++-..||..+.+.+.+++-..|+.+...+...++-.
T Consensus 354 v~~Lkke~~kT~~~---------------e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fi 405 (948)
T KOG1058|consen 354 VQFLKKEVMKTHNE---------------ESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFI 405 (948)
T ss_pred HHHHHHHHHhcccc---------------ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHh
Confidence 22223333332110 11234799999999999999999999988866655443
No 56
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=23.51 E-value=2.3e+02 Score=31.31 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCChhhhhHHHHHHHHHcCCCCCC
Q 001398 112 ATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPA 169 (1085)
Q Consensus 112 ~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~r~~A~ecL~~i~sRk~~~ 169 (1085)
-+-..+|+.+..++.-++...=...+++..+..++. .++-..|++.|.+++++++.+
T Consensus 203 w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~-t~~~~eAL~VLd~~v~~s~s~ 259 (262)
T PF14225_consen 203 WLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQ-TDLWMEALEVLDEIVTRSGSP 259 (262)
T ss_pred HHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhC-CccHHHHHHHHHHHHhhcccc
Confidence 455677777777887777775455667777765654 568888999999999888654
No 57
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=23.27 E-value=1.2e+03 Score=27.12 Aligned_cols=240 Identities=13% Similarity=0.046 Sum_probs=111.4
Q ss_pred HHHHhhhhc----ccchhhHHHHHHHh-hcCChhHHHHHHHHHHhhhhhhccccCCchHHHHHH-HHHHHHh------hh
Q 001398 10 PCRRVRREG----INLWQELFPSLVSL-SSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRL-LLRGLTQ------SL 77 (1085)
Q Consensus 10 lveivkrew----p~~Wp~fl~eL~~l-~~~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~-L~~~L~~------~~ 77 (1085)
+|.++|+.. -..|..|.+++..+ .+.+...+-..++++|.+..|... .+.+...+-.- +-.+|.. +-
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence 566776633 36899999998863 344455666788999988765532 00000000000 0011111 11
Q ss_pred hhHHHHHHHHHHHH---------HHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHH-hhcC
Q 001398 78 PEILPLLYSLLERH---------FGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG-FLLS 147 (1085)
Q Consensus 78 p~I~~~~~~~Le~~---------~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~-~ll~ 147 (1085)
.+.+.++..+++-. +.+...+...+. --++...||.|+...+- ..+..++..|-+..+. .+..
T Consensus 86 ~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~------~D~lr~~cletL~El~l-~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHE------DDRLRRICLETLCELAL-LNPELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCC------chHHHHHHHHHHHHHHh-hCHHHHHHcCCHHHHHHHHHh
Confidence 24444444444431 001111111111 12467777777655442 3444555555445543 3332
Q ss_pred -ChhhhhHHHHHHHHHcCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhh
Q 001398 148 -SPDFRLHACEFFKLVSPRKGPADASAS-EFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGT 225 (1085)
Q Consensus 148 -~~~~r~~A~ecL~~i~sRk~~~~~~~~-lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~ 225 (1085)
..+.....+.++..+++... .|.- ..+.-++.++....+. .. ...-++.+.+.++.-+..++++..
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~---tR~yl~~~~dL~~l~apftd~----~~-----~~~~~~~~~~~l~~s~~ai~~~Lr 226 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPR---TRKYLRPGFDLESLLAPFTDF----HY-----RKIKDDRELERLQASAKAISTLLR 226 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcc---hhhhhcCCccHHHHHHhhhhh----hc-----cccccchHHHHHHHHHHHHHHHHh
Confidence 22344455555555555431 1110 0011123333221111 00 001111212466666666666632
Q ss_pred hhccccccccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 001398 226 SNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRD 270 (1085)
Q Consensus 226 ~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~ 270 (1085)
.--..+.=...+. .-++-++.++++|...+....++....+++-
T Consensus 227 sW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 227 SWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred cCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 2111110001122 4467788899999999999999988877764
No 58
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=23.25 E-value=3.7e+02 Score=30.32 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHH---H---hCCCCC--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCC
Q 001398 973 VISADLVGLCREIFIYMCDRDPAPRQVL---L---SLPCIT--PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 1041 (1085)
Q Consensus 973 ~~~~~l~~L~~~iy~~l~~~~~~~~~vL---~---~lP~i~--~~~l~~f~~~l~~~~s~K~qr~~~k~ll~~~~g~ 1041 (1085)
+.......+|...|..+|........++ . .+|..+ .+++..+.+++.-..++++-...|.+++..+.+.
T Consensus 200 ~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~lI~~s~~~ 276 (293)
T cd05168 200 DLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDELINQSLDN 276 (293)
T ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3456778888888888887777665543 3 467777 7899999999988889999999999999999875
No 59
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=23.06 E-value=1.5e+02 Score=30.98 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhccccCCcchhcccChHHHH----H--hhcCChhhhhHHHHHHHHHcCCCC
Q 001398 110 HAATVTATLNAINAYAEWAPLPDLAKYGIIHGC----G--FLLSSPDFRLHACEFFKLVSPRKG 167 (1085)
Q Consensus 110 ~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L----~--~ll~~~~~r~~A~ecL~~i~sRk~ 167 (1085)
+..+....|+|+...+.=.|.+.+. .|++..+ . ..-.|+++|.++.-|+..+++-..
T Consensus 115 ~~~~l~q~lK~la~Lv~~tPY~rL~-~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 115 SPPVLTQLLKCLAVLVQATPYHRLP-PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred ccHHHHHHHHHHHHHHccCChhhcC-HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 3568889999999999999998874 4555543 2 233679999999999999988663
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=22.93 E-value=3.2e+02 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHhhhChHhHHh
Q 001398 567 QQEVLAWLLEPLSQQWMQLEWQN 589 (1085)
Q Consensus 567 q~~~l~~ll~P~~~~W~~~~~~~ 589 (1085)
=.+++..|++|+..-..+++++.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rV 43 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRV 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHH
Confidence 57889999999999888888764
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=22.26 E-value=4.6e+02 Score=31.03 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhccccCCcchhcc--cChHHHH--HhhcCChhhhhHHHHHHHHHcCCC
Q 001398 113 TVTATLNAINAYAEWAPLPDLAK--YGIIHGC--GFLLSSPDFRLHACEFFKLVSPRK 166 (1085)
Q Consensus 113 ~v~~aL~tl~~yl~Wip~~~i~~--~~ll~~L--~~ll~~~~~r~~A~ecL~~i~sRk 166 (1085)
.-...|.++.+-+.++|.+.+.. ..+++++ +.-+++++++..++++|..++.-+
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 34556778888999999887743 3389987 366778899999999999998755
No 62
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=7.9e+02 Score=30.12 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=106.1
Q ss_pred hHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhh--hhh-cCC
Q 001398 396 DLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGP--FLK-YYP 472 (1085)
Q Consensus 396 ~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~--fl~-~~~ 472 (1085)
.|-..-+...-+|.+++++... ++. ..+-..++.++......-...+. +.- .++.-.. -+. ...
T Consensus 13 lYekRKaaalelEk~Vk~l~~~------~~~---~~i~k~I~~L~~d~a~s~~~n~r-kGg---LiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNN------NDY---DQIRKVISELAGDYAYSPHANMR-KGG---LIGLAAVAIALGIKDA 79 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc------CcH---HHHHHHHHHHHHHhccCcccccc-cch---HHHHHHHHHHhccccH
Confidence 3555566667778888876652 222 34555666677766643332221 111 1111111 111 111
Q ss_pred CchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccc--------cc
Q 001398 473 DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGR--------LL 544 (1085)
Q Consensus 473 ~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~--------L~ 544 (1085)
.++.+++..++.++. +....+|.-||.++-.||+.+...+.+|++.|.+.+..+....+ |.
T Consensus 80 ~Y~~~iv~Pv~~cf~-----------D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLL 148 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFS-----------DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELL 148 (675)
T ss_pred HHHHHhhHHHHHhcc-----------CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHH
Confidence 244455555544432 12236899999999999999999999999999777766655311 10
Q ss_pred -h--------HH-HHHHHHHHHHHh---cCCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCCh-HHHHHhccCccc--h
Q 001398 545 -R--------GE-HNLLGEAFLVMA---SAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEP-LGLVRLCSDTSF--M 608 (1085)
Q Consensus 545 -~--------~e-~~~L~Eal~~is---s~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~-~~f~~~~g~~~~--~ 608 (1085)
. .. .-.+-+++-++. ...++..|+-++.|+=---. =-.-+|-. ++.+. .|+..++||..- |
T Consensus 149 dRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~-yl~~~ldGLf~~LsD~s~eVr 225 (675)
T KOG0212|consen 149 DRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMIS-YLPSLLDGLFNMLSDSSDEVR 225 (675)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHh-cchHHHHHHHHHhcCCcHHHH
Confidence 0 00 112333333332 24466667777777521000 01113332 44444 678888886532 3
Q ss_pred hhhHHHHHHHHHHhhhh
Q 001398 609 WSLFHTVTFFERALKRS 625 (1085)
Q Consensus 609 ~~~~~~v~~~~~~lkr~ 625 (1085)
..--.++..|.+.++..
T Consensus 226 ~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 226 TLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 22222355666666644
No 63
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.31 E-value=2.3e+03 Score=29.65 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhhhhhcC------C---CchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCcc
Q 001398 453 LVVALGHYLDALGPFLKYY------P---DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI 523 (1085)
Q Consensus 453 l~s~~l~~l~~l~~fl~~~------~---~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l 523 (1085)
.....+.+++.|+||+.-. + ++.....+++|..|.++. +. ..-.+|++|...+-++|-.+|..+
T Consensus 1188 ~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~---k~----~~~~lR~~al~~Lg~~ci~hp~l~ 1260 (1692)
T KOG1020|consen 1188 KLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFS---KD----KDGELRRKALINLGFICIQHPSLF 1260 (1692)
T ss_pred HHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHH---Hh----hhhHHHHHHHHHHHHHHhhCchhh
Confidence 4556677889999865321 1 234567889988877531 21 114699999999999999999875
Q ss_pred -chHHHHHH
Q 001398 524 -LPHMKDIA 531 (1085)
Q Consensus 524 -~P~~~~i~ 531 (1085)
.+++..++
T Consensus 1261 ~~~~v~nly 1269 (1692)
T KOG1020|consen 1261 TSREVLNLY 1269 (1692)
T ss_pred hhHHHHHHH
Confidence 35555553
No 64
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=21.18 E-value=8.9e+02 Score=24.74 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=77.4
Q ss_pred hhhhHHHHhcCcCchHHHHHHHHhhhcccchhhhHHHH-HhHHHHHHhhhhccchhhhHHHHHHHHHHHHHHhccCchHh
Q 001398 895 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVS-SFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAV 973 (1085)
Q Consensus 895 ~~~l~~~~l~~~~~~~~~l~~~~~~l~w~Dt~~~~ka~-~~~~~l~~~~~~~~~~~l~~~~~~~~~~a~l~~L~~~~~~~ 973 (1085)
...|+..+.+.++++++.+...+.+|.=+| ..+++.+ ....-|+..-+. . +-..+|..++..|.++- .+
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~i----k----~k~~l~~~~l~~l~D~~-~~ 78 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMI----K----VKGQLFSRILKLLVDEN-PE 78 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCce----e----ehhhhhHHHHHHHcCCC-HH
Confidence 356888889999999999999999986333 2455544 333333321111 1 12444566666664443 33
Q ss_pred hHHHHHHHHHHHHHhcCCC--CchHHHHHHhCC---------CCCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhcCC
Q 001398 974 ISADLVGLCREIFIYMCDR--DPAPRQVLLSLP---------CITPQDLLAFEDALTKTAS-PREQKQHMRSLLVLGTGN 1041 (1085)
Q Consensus 974 ~~~~l~~L~~~iy~~l~~~--~~~~~~vL~~lP---------~i~~~~l~~f~~~l~~~~s-~K~qr~~~k~ll~~~~g~ 1041 (1085)
..+-....+.++.....|. ++..-+++..+. +.+.++-....+.|.+.-+ +|++-.++.||...+.+.
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~ 158 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNA 158 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 3333333333333332211 122233333333 2556666677777766555 888888888888877554
Q ss_pred c
Q 001398 1042 N 1042 (1085)
Q Consensus 1042 ~ 1042 (1085)
.
T Consensus 159 ~ 159 (178)
T PF12717_consen 159 V 159 (178)
T ss_pred c
Confidence 3
No 65
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=21.17 E-value=37 Score=17.34 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=5.4
Q ss_pred hhccCCh
Q 001398 793 MVKFCPL 799 (1085)
Q Consensus 793 lv~~CP~ 799 (1085)
++.+||.
T Consensus 2 ~i~nCP~ 8 (9)
T PF00220_consen 2 YIRNCPI 8 (9)
T ss_pred ccccCCC
Confidence 5789985
No 66
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=21.14 E-value=5.2e+02 Score=30.86 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHhhcCC--hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhh----hhhHHHHHHHHHHHH
Q 001398 18 GINLWQELFPSLVSLSSKG--PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS----LPEILPLLYSLLERH 91 (1085)
Q Consensus 18 wp~~Wp~fl~eL~~l~~~~--~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~----~p~I~~~~~~~Le~~ 91 (1085)
|-++...++..+++..+.+ +..+++.|++|+...+-=..-..|-+.---...+++-+.. +..--+-|..++..|
T Consensus 323 Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~ 402 (516)
T KOG2956|consen 323 WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH 402 (516)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHhhhhchHHHhhHHHHHHH--------HHHHHHhccccCCcchhcc--cChHHHH--HhhcCChhhhhHHHHHH
Q 001398 92 FGAALSEVGRQQLDVAKQHAATVTA--------TLNAINAYAEWAPLPDLAK--YGIIHGC--GFLLSSPDFRLHACEFF 159 (1085)
Q Consensus 92 ~~~~~~~~~~~~~~~a~~~~~~v~~--------aL~tl~~yl~Wip~~~i~~--~~ll~~L--~~ll~~~~~r~~A~ecL 159 (1085)
.. ...-..-+.++.. +++++...++=++...+.. +++.+.+ ..=..+..+|..|+=||
T Consensus 403 ~P----------~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 403 LP----------LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCL 472 (516)
T ss_pred Cc----------hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhH
Q ss_pred HHHcCC
Q 001398 160 KLVSPR 165 (1085)
Q Consensus 160 ~~i~sR 165 (1085)
..++.|
T Consensus 473 Vamv~~ 478 (516)
T KOG2956|consen 473 VAMVNR 478 (516)
T ss_pred HHHHHH
No 67
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=21.00 E-value=6e+02 Score=23.97 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=40.6
Q ss_pred HHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc-cCccchHHHHHHHHHHH
Q 001398 461 LDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS-DKSILPHMKDIADTMAY 536 (1085)
Q Consensus 461 l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~-~~~l~P~~~~i~~~i~~ 536 (1085)
+.++..+.+...+.+..++-||...|.+- .. ..++|..|+....-+.+.- ++.+.|.++++.-.+-+
T Consensus 36 i~ai~~lI~~~g~~i~~a~pQI~acL~sa---L~------~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 36 LRSIGFLIKLMGKHISSALPQIMACLQSA---LE------IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33444444433355666677777766521 11 2358888888888888874 46677777776544443
Done!