Query 001398
Match_columns 1085
No_of_seqs 218 out of 459
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 02:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a6p_A Exportin-5; exportin-5, 100.0 9E-126 3E-130 1247.2 80.8 1005 3-1084 113-1201(1204)
2 3gjx_A Exportin-1; transport, 100.0 1.3E-46 4.5E-51 480.3 66.6 519 4-585 130-670 (1073)
3 3ibv_A Exportin-T; karyopherin 100.0 5.3E-47 1.8E-51 486.9 52.6 815 3-1042 107-979 (980)
4 4hat_C Exportin-1; heat repeat 100.0 8.2E-44 2.8E-48 457.4 70.0 502 3-585 117-644 (1023)
5 3m1i_C Exportin-1; heat repeat 100.0 1.3E-38 4.4E-43 417.0 70.8 506 3-585 117-644 (1049)
6 2x19_B Importin-13; nuclear tr 100.0 2.3E-37 7.9E-42 402.5 56.3 806 3-1041 120-954 (963)
7 2x1g_F Cadmus; transport prote 100.0 4.8E-36 1.6E-40 390.3 59.2 813 3-1042 102-967 (971)
8 4fdd_A Transportin-1; heat rep 99.7 1.4E-13 4.7E-18 176.4 42.6 420 4-583 108-536 (852)
9 2bpt_A Importin beta-1 subunit 99.6 1.7E-12 5.9E-17 165.9 37.3 423 4-584 113-552 (861)
10 1wa5_C Importin alpha RE-expor 99.5 2E-12 7E-17 167.6 31.4 471 4-583 103-604 (960)
11 1qgr_A Protein (importin beta 99.5 1.6E-10 5.4E-15 148.0 42.6 422 4-584 107-560 (876)
12 1ibr_B P95, importin beta-1 su 98.8 1.3E-07 4.3E-12 111.2 21.3 341 4-486 107-460 (462)
13 4fdd_A Transportin-1; heat rep 97.8 0.012 4E-07 74.9 34.7 104 447-560 680-784 (852)
14 1u6g_C TIP120 protein, CAND1; 97.6 0.0097 3.3E-07 78.9 29.2 409 112-603 149-601 (1230)
15 2bpt_A Importin beta-1 subunit 97.1 0.3 1E-05 61.6 33.7 90 449-539 694-788 (861)
16 1qgr_A Protein (importin beta 96.8 1.2 4E-05 56.2 35.2 110 450-560 706-827 (876)
17 1u6g_C TIP120 protein, CAND1; 96.2 0.89 3E-05 60.0 29.6 122 447-581 529-658 (1230)
18 1b3u_A Protein (protein phosph 96.0 1.8 6.1E-05 51.4 28.5 115 447-580 412-526 (588)
19 2vgl_B AP-2 complex subunit be 95.4 5.7 0.00019 47.7 29.7 161 351-553 367-527 (591)
20 1b3u_A Protein (protein phosph 95.3 2.4 8.2E-05 50.3 25.6 63 447-521 490-552 (588)
21 2x19_B Importin-13; nuclear tr 90.0 46 0.0016 42.1 27.3 73 110-184 502-574 (963)
22 1w63_A Adapter-related protein 87.9 53 0.0018 39.4 27.7 166 351-556 399-575 (618)
23 1ibr_B P95, importin beta-1 su 87.8 41 0.0014 37.9 29.1 77 447-534 376-456 (462)
24 2qk1_A Protein STU2; STU2P, XM 87.1 11 0.00036 39.9 15.4 123 447-582 71-200 (249)
25 2qk2_A LP04448P; mini spindles 86.8 13 0.00043 38.7 15.8 116 448-582 68-185 (242)
26 2jdq_A Importin alpha-1 subuni 80.8 78 0.0027 35.5 24.6 191 20-260 13-212 (450)
27 2jdq_A Importin alpha-1 subuni 79.3 86 0.0029 35.1 22.6 54 113-166 36-96 (450)
28 2qk1_A Protein STU2; STU2P, XM 78.8 42 0.0014 35.2 15.9 113 438-563 104-223 (249)
29 2db0_A 253AA long hypothetical 76.5 66 0.0022 32.2 16.5 174 350-559 45-245 (253)
30 2vgl_A Adaptor protein complex 74.1 43 0.0015 40.3 16.3 114 433-560 144-270 (621)
31 1wa5_B Importin alpha subunit; 72.9 1.4E+02 0.0049 34.5 20.3 55 112-166 102-162 (530)
32 1wa5_C Importin alpha RE-expor 71.1 45 0.0015 42.4 16.2 141 432-581 494-649 (960)
33 2qk2_A LP04448P; mini spindles 65.5 26 0.00088 36.2 10.3 73 447-530 143-219 (242)
34 3o2t_A Symplekin; heat repeat, 64.7 1.8E+02 0.0062 32.5 26.3 103 431-538 218-320 (386)
35 3m1i_C Exportin-1; heat repeat 58.3 3.8E+02 0.013 34.1 31.0 54 112-165 515-570 (1049)
36 1wa5_B Importin alpha subunit; 56.5 2E+02 0.0069 33.1 17.1 128 113-262 147-279 (530)
37 3ibv_A Exportin-T; karyopherin 54.1 64 0.0022 41.1 12.8 72 502-580 715-787 (980)
38 4b8j_A Importin subunit alpha- 52.4 3.1E+02 0.011 31.4 20.1 53 113-165 90-148 (528)
39 2vgl_B AP-2 complex subunit be 47.5 1.5E+02 0.0051 35.1 14.0 127 112-266 136-265 (591)
40 4hat_C Exportin-1; heat repeat 42.0 6.4E+02 0.022 32.0 35.4 102 37-165 467-570 (1023)
41 2vgl_A Adaptor protein complex 41.4 5.1E+02 0.018 30.7 29.2 105 436-556 480-587 (621)
42 1w63_A Adapter-related protein 33.8 1.6E+02 0.0053 35.2 11.2 89 447-560 117-205 (618)
43 2of3_A ZYG-9; multifunctional 28.0 1.5E+02 0.0052 31.3 8.5 66 447-527 97-172 (266)
44 3gs3_A Symplekin, LD45768P; he 23.0 6.6E+02 0.022 26.2 20.7 52 430-482 204-256 (257)
45 3tjz_B Coatomer subunit gamma; 22.5 1.2E+02 0.0041 33.6 6.7 89 447-560 114-202 (355)
46 2of3_A ZYG-9; multifunctional 20.9 2.6E+02 0.009 29.5 8.6 52 112-166 182-238 (266)
No 1
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=8.5e-126 Score=1247.18 Aligned_cols=1005 Identities=21% Similarity=0.323 Sum_probs=783.6
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHH
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILP 82 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~ 82 (1085)
.||+++++++|+|++||+.||+|+++|+++++.++.++|++|.+|+.|+||++.+ +++...|++++++.|+.++|.||+
T Consensus 113 r~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~-~~~~~~r~~~l~~~l~~~~~~I~~ 191 (1204)
T 3a6p_A 113 KDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF-QTLPPQRRRDIQQTLTQNMERIFS 191 (1204)
T ss_dssp HHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTS-CCSCHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999889899999999999999999984 677779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-hhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccC--hHHHHHhhcCChhhhhHHHHHH
Q 001398 83 LLYSLLERHFGAALSEVG-RQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYG--IIHGCGFLLSSPDFRLHACEFF 159 (1085)
Q Consensus 83 ~~~~~Le~~~~~~~~~~~-~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~--ll~~L~~ll~~~~~r~~A~ecL 159 (1085)
+++.++++++..+..++. .++.+.+..+..++.++|+|++.|++|+|++.+++.+ +++.++.+++++++|..|++||
T Consensus 192 ~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL 271 (1204)
T 3a6p_A 192 FLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECL 271 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999887655433221 2223334456779999999999999999999998764 9999888899999999999999
Q ss_pred HHHcCCCCCCCCChHHH----HHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccc--
Q 001398 160 KLVSPRKGPADASASEF----ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAR-- 233 (1085)
Q Consensus 160 ~~i~sRk~~~~~~~~lf----~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~-- 233 (1085)
.+|++|+++++++.+++ +..+..++.. +. ..++.+++|++|+|.|++|++++++|.++..++++
T Consensus 272 ~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~----~~------~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~ 341 (1204)
T 3a6p_A 272 LIAVSRKGKLEDRKPLMVLFGDVAMHYILSA----AQ------TADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADS 341 (1204)
T ss_dssp HHHHTCCSCHHHHGGGGGGGSHHHHHHHHHH----HH------TCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhCCCChhhHHHHHHHHhhHHHHHHHHH----hh------cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999986543333322 1222333321 11 23455678999999999999999999887776653
Q ss_pred ---ccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh-hhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcch
Q 001398 234 ---EDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLM-SKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLN 309 (1085)
Q Consensus 234 ---~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 309 (1085)
....+..|+++|+.+++||+..++..+++||..++++.. +..+ ..
T Consensus 342 ~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~-------------------------------~~ 390 (1204)
T 3a6p_A 342 DVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDP-------------------------------LL 390 (1204)
T ss_dssp SCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCH-------------------------------HH
T ss_pred cccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccH-------------------------------HH
Confidence 345789999999999999999999999999999998721 1100 12
Q ss_pred hhhHHHHHHHH---HHHhhcccCCCCCCCCccccccccCCcch----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 001398 310 DDISGAILDIS---FQRLVKREKAPGTQGPLELWSDDFEGKGD----FSQYRSRLLELVKFVASNKPLVAGVKVSERVMA 382 (1085)
Q Consensus 310 ~~i~~~Ll~v~---~~km~~~~~~~~~~~~~e~~~~dfd~~~e----f~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~ 382 (1085)
.++++.|++++ +.||.+|++.. .++.++..+|||+++| |++||+++.++++.++++.|..++.++.+++..
T Consensus 391 ~~~l~~Ll~vl~~~l~k~~yp~~~~--~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~ 468 (1204)
T 3a6p_A 391 LAIIPKYLRASMTNLVKMGFPSKTD--SPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKY 468 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCCCCSSCCS--STHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccccC--CcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 47899999999 55665554321 1113345567777644 699999999999999999999999999999977
Q ss_pred HHhhcc-----------------cCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 001398 383 IINSLL-----------------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS 445 (1085)
Q Consensus 383 ~l~~~~-----------------~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~ 445 (1085)
.+.+.. .|+..++.|..||++..++||++++++++... ++.+. ..+.++++.|++
T Consensus 469 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~---~~l~~-----~~~~~Ll~~ll~ 540 (1204)
T 3a6p_A 469 QLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR---EEIPV-----NDGIELLQMVLN 540 (1204)
T ss_dssp HHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCCH-----HHHHHHHHHHHH
T ss_pred HHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccc---ccccH-----HHHHHHHHHHHh
Confidence 766421 12455678999999999999999999886531 11111 247789999999
Q ss_pred cCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccC-CCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccc
Q 001398 446 LKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL 524 (1085)
Q Consensus 446 ~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~-p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~ 524 (1085)
++++||.++..+++++++|++|+.++|+++++||++||..+... |+..++++++++|++|++||++|.+||+.+++.+.
T Consensus 541 ~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 541 FDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp CCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 89999999999999999999999999999999999999988753 44456677889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHHhc
Q 001398 525 PHMKDIADTMAYLQREGR-LLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLC 602 (1085)
Q Consensus 525 P~~~~i~~~i~~l~~~~~-L~~~e~~~L~Eal~~iss-~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~ 602 (1085)
||+++|.+.+.+++.+++ ++.+|++.||||++++++ ..+.++|.++++++++|+.+.|.+++|++ ++++|.+|++++
T Consensus 621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~-~~s~~~~f~~~~ 699 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHR-VLSDVDAFIAYV 699 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHH-hhcCHHHHHHHh
Confidence 999999999999999888 999999999999999986 56788999999999999999999999997 999999999999
Q ss_pred cCc-------------cchhhhHHHHHHHHHHhhhhcccccc---------ccccCCCCCCcccccchhhhhhhhhhhHH
Q 001398 603 SDT-------------SFMWSLFHTVTFFERALKRSGIRKAN---------LNLQSSSAENSAVMHPMASHLSWMLPPLL 660 (1085)
Q Consensus 603 g~~-------------~~~~~~~~~v~~~~~~lkr~~~~~~~---------~~s~~~~~~~~~~~~p~~~~~~~iLP~ll 660 (1085)
|.. ..|+.++++++.+++++||++++..+ +++ .++++|.++||+++++++|||+|+
T Consensus 700 G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~--~~~~~p~~~~p~~~~i~~ilP~ll 777 (1204)
T 3a6p_A 700 GTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGY--TSSGNPIFRNPCTEQILKLLDNLL 777 (1204)
T ss_dssp TSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEE--CSSCCEEECCTTHHHHHHHHHHHH
T ss_pred CCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceecc--CCCCCccccCchHHHHHHHhHHHH
Confidence 921 23799999999999999998654321 111 136788999999999999999999
Q ss_pred HHHHHHHhccCccccccCcHHHHHHcccCHHHHhhhcCCCCCCcccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHH
Q 001398 661 KLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVR 740 (1085)
Q Consensus 661 ~Llr~~h~l~~P~~~~~l~~~~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~r 740 (1085)
+|+|++|++|+|++|+++|++|+++++|+++||+|++|.+. .++ +|++.+ +.....+++|+|++.+|
T Consensus 778 ~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~--~~~---~~~~~~--------~~~~~~~~l~~~~~~~r 844 (1204)
T 3a6p_A 778 ALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQ--PLL---ELNDSP--------VFKTVLERMQRFFSTLY 844 (1204)
T ss_dssp HHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCC--CCC---CTTCCC--------SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCc--ccc---cccccC--------CCcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 233 244432 12467899999999999
Q ss_pred HHHHHHHHhhh-cCCcccccCCCchH-HHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHH
Q 001398 741 DSGYNVLGLSA-TIGDPFFKSLDSGS-VVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQ 818 (1085)
Q Consensus 741 e~~y~ilg~~~-~l~~~fy~~~~l~~-l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~l~~~~~ 818 (1085)
|+||+++|+++ ++|++||++++++. +.+|+|+++++||+||||.+||++++|+|++||+++|++|+.|+|+|+|.+|+
T Consensus 845 e~~y~~lg~~~~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p~i~~CP~~~~~~~l~plL~~lf~~~~ 924 (1204)
T 3a6p_A 845 ENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLH 924 (1204)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHHHHHTCCGGGTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999995 99999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhc---------cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccc--cccc
Q 001398 819 QVLSSSWSSLMHEV---------AGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVD--VLSL 887 (1085)
Q Consensus 819 ~rL~~~W~~i~~~~---------~~~~~~~E~~eE~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 887 (1085)
+||+++|..+.+++ +++++++||+||++||+|||++++++.+++.++.+ +.+ ..+|+.+.|| +.+.
T Consensus 925 ~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 1001 (1204)
T 3a6p_A 925 MRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKG-ADH--SSAPPADGDDEEMMAT 1001 (1204)
T ss_dssp HHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC-------------------------
T ss_pred HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc--cccccccccccccccc
Confidence 99999999999851 24679999999999999999999999999887632 211 2234443332 2222
Q ss_pred c--cchhhhhhhhHHHHhcCcCchHHHHHHHHhhhcccchh-hhHHHHHhHHHHHHhhhhccchhhhHHHHHHHHHHHHH
Q 001398 888 K--DLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGE-AVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIR 964 (1085)
Q Consensus 888 ~--~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~w~Dt~-~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~~~~a~l~ 964 (1085)
+ +......++|++|+|.|+++++|+|.+|+++|+|+||+ |+.+|+.||+++++..+. +..+.+. +.++|+++|+
T Consensus 1002 ~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~l~~~vl~ 1078 (1204)
T 3a6p_A 1002 EVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLS--GTLLADA-VTWLFTSVLK 1078 (1204)
T ss_dssp --------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCS--SCCCHHH-HHHHHHHHHH
T ss_pred cccccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhc--ccCchHH-HHHHHHHHHH
Confidence 1 22244568999999999999999999999999999999 899999999999987653 3345565 9999999999
Q ss_pred HhccCch-HhhHHHHHHHHHHHHHhcCCCCchHHHHHHhCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhhc
Q 001398 965 GLALESN-AVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTA----SPREQKQHMRSLLVLGT 1039 (1085)
Q Consensus 965 ~L~~~~~-~~~~~~l~~L~~~iy~~l~~~~~~~~~vL~~lP~i~~~~l~~f~~~l~~~~----s~K~qr~~~k~ll~~~~ 1039 (1085)
||+.+++ +++++|+++|++.||+.|++++++||+||++||||+++++++|+++|.++. ++|+||++|||||++++
T Consensus 1079 ~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~ 1158 (1204)
T 3a6p_A 1079 GLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCI 1158 (1204)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHSTTTCSTHHHHHTTSSSCCHHHHHHHHHHSSCC----------------------
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHhCCCCccHHHHHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhc
Confidence 9998885 999999999999999999999999999999999999999999999997644 59999999999999999
Q ss_pred CCchHhhhhhhcccc-ccccCCCCCCCCCCCCCCcccCCccccccC
Q 001398 1040 GNNLKALAAQKSVNV-ITNVSTRPRSSDNAPESRTEEGESIGLAAI 1084 (1085)
Q Consensus 1040 g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1085)
|+++++ |++++| |.|+|+..+.++++.+...-|.+..||+.|
T Consensus 1159 g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1201 (1204)
T 3a6p_A 1159 GKPLGE---QFRKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201 (1204)
T ss_dssp ----------------------------------------------
T ss_pred CCcHHH---hhcccccccCCCCCCCCCCCCCcCCCCCCccccHHHh
Confidence 999875 788888 999999976656665444445555599876
No 2
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1.3e-46 Score=480.32 Aligned_cols=519 Identities=15% Similarity=0.191 Sum_probs=404.5
Q ss_pred cccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccc-CCchHHHHHHHHHHHHhhhhhHHH
Q 001398 4 EKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHN-EDLEGDRRRLLLRGLTQSLPEILP 82 (1085)
Q Consensus 4 nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~-~dl~~~rr~~L~~~L~~~~p~I~~ 82 (1085)
||++++++.|+|++||+.||+|+++|+++++.++.+++++|.||+.|+|||+++. ++++..||+++++.|++.+|.|++
T Consensus 130 nKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ 209 (1073)
T 3gjx_A 130 GKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQ 209 (1073)
T ss_dssp HHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999899999999999999999999863 347889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHH-HhhcCChhhhhHHHHHHHH
Q 001398 83 LLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHACEFFKL 161 (1085)
Q Consensus 83 ~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~r~~A~ecL~~ 161 (1085)
+++.++++. .+..++.++|+|++.|++|+|+++++++++++++ +.+++++++|.+|++||.+
T Consensus 210 ll~~iL~~~-----------------~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~~~~r~aA~dcL~e 272 (1073)
T 3gjx_A 210 LCQFVMENS-----------------QNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNVPMFRNVSLKCLTE 272 (1073)
T ss_dssp HHHHHHHHC-----------------CCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHhccc-----------------CCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999888732 1246889999999999999999999999999988 7899999999999999999
Q ss_pred HcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCChhhhHHHHHHHHHHHHhhhhhccccccccc-
Q 001398 162 VSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTS----AGAIDESEFEFAEYICESMVSLGTSNLHCIAREDT- 236 (1085)
Q Consensus 162 i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~----~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~- 236 (1085)
|++++. +.|+..+..+|...++....++.. ..+ ....++++.+|.+.+|.+++.+|..+...+++++.
T Consensus 273 Iv~k~~------~~~~~~~~~lf~~~~~~i~~ilp~-~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~ 345 (1073)
T 3gjx_A 273 IAGVSV------SQYEEQFETLFTLTMMQLKQMLPL-NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNL 345 (1073)
T ss_dssp HHHSCS------GGGHHHHHHHHHHHHHHHHHHSCT-TSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHhccc------cchHHHHHHHHHHHHHHHHHhcCC-chhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999862 123333444554433333222210 000 01124556789999999999999999988876543
Q ss_pred --cHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHH
Q 001398 237 --ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISG 314 (1085)
Q Consensus 237 --~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~ 314 (1085)
.+...++.++.++.||..++++.|++||..|...++.+.+.....++... +.+ ..... .+..+|.+++.
T Consensus 346 ~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~-~~~---~~~~~-----~~~~~y~~i~~ 416 (1073)
T 3gjx_A 346 REALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLS-GSQ---HFDIP-----PRRQLYLTVLS 416 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTT-SSC---CSCSC-----HHHHTTHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccccc-ccc---cccch-----hHHHHHHHHHH
Confidence 23345567899999999999999999999999987654320000000000 000 00001 12345679999
Q ss_pred HHHHHHHHHhhcccCCC--CCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCC
Q 001398 315 AILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTM 392 (1085)
Q Consensus 315 ~Ll~v~~~km~~~~~~~--~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~ 392 (1085)
.|+.+++.||.||+++. +++ .++..+ ||-.|++-.+.|+.+++++.+++++++.+++..+.+.+.+.+++.
T Consensus 417 ~L~~vlI~~m~~P~ev~i~e~e-~ge~~r-e~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~----- 489 (1073)
T 3gjx_A 417 KVRLLMVSRMAKPEEVLVVEND-QGEVVR-EFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGT----- 489 (1073)
T ss_dssp HHHHHHHHTCCCSCCEEEEECS-SSCEEE-EECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHHhcCCCccccccCcc-cchHHH-HHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-----
Confidence 99999999999999753 222 244444 555555667899999999999999999999999999998887642
Q ss_pred ChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChh--HHHHHHHHHHhhhhhhhc
Q 001398 393 PAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPP--LVVALGHYLDALGPFLKY 470 (1085)
Q Consensus 393 ~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~--l~s~~l~~l~~l~~fl~~ 470 (1085)
.+.|......|+|+.+ +.+. +. ++.| ...+.+++..|++.+...+++|+. +++.+|+++++|++|++.
T Consensus 490 ----~~sW~~lea~~~aiga--Iag~--~~-~~~E-~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~ 559 (1073)
T 3gjx_A 490 ----EWSWKNLNTLCWAIGS--ISGA--MH-EEDE-KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA 559 (1073)
T ss_dssp ----CCCHHHHHHHHHHHHH--TTTS--SC-HHHH-HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----CCCHHHHhHHHHHHHH--HHCc--CC-cccc-cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence 3468888889998855 2221 11 0123 377888999999998888787765 789999999999999999
Q ss_pred CCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCcc--------chHHHHHHHHHHHHHHccc
Q 001398 471 YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI--------LPHMKDIADTMAYLQREGR 542 (1085)
Q Consensus 471 ~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l--------~P~~~~i~~~i~~l~~~~~ 542 (1085)
||+++.+|++|+|++|++. .+.|+.+||++|.+||+++...+ .||+++|++.+.+.. ++
T Consensus 560 h~~~L~~vl~~L~~~m~~~-----------~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~--~~ 626 (1073)
T 3gjx_A 560 HWKFLKTVVNKLFEFMHET-----------HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTII--CD 626 (1073)
T ss_dssp CHHHHHHHHHHHHHHTTCC-----------STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHH--TT
T ss_pred CHHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH--Hh
Confidence 9999999999999998621 22588999999999999987765 689999987777553 47
Q ss_pred cchHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHhHHHHhhhChH
Q 001398 543 LLRGEHNLLGEAFLVMASAAGI-QQQQEVLAWLLEPLSQQWMQL 585 (1085)
Q Consensus 543 L~~~e~~~L~Eal~~iss~~~~-~~q~~~l~~ll~P~~~~W~~~ 585 (1085)
|.+.....||||++.+++..+. ..+.++++.+|+|.++.|.+-
T Consensus 627 l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l 670 (1073)
T 3gjx_A 627 LQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSI 670 (1073)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999985555 468999999999999999754
No 3
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=5.3e-47 Score=486.93 Aligned_cols=815 Identities=13% Similarity=0.131 Sum_probs=529.3
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCC-h-hHHHHHHHHHHhhhhhhccc---cCCchHHHHHHHHHHHHhh-
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKG-P-IQAELVSMMLRWLPEDITVH---NEDLEGDRRRLLLRGLTQS- 76 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~-~-~~~El~l~iLr~L~EDv~~~---~~dl~~~rr~~L~~~L~~~- 76 (1085)
.||+++++++|++|+||+.||+|+++|+++++.+ + ...+.+|+||..|+|||+++ .++...+|++++++.|+++
T Consensus 107 rnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~ 186 (980)
T 3ibv_A 107 SNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRAND 186 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhcc
Confidence 4899999999999999999999999999999764 3 35677778888888999873 2224568888999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCChhhhhHHH
Q 001398 77 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHAC 156 (1085)
Q Consensus 77 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~r~~A~ 156 (1085)
++.|++.|+.+|+++.. ..+..++..+|+|++.|++|+|++++++++++++++.+++++++|.+||
T Consensus 187 ~~~i~~~~~~iL~~~~~--------------~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~~~~r~~A~ 252 (980)
T 3ibv_A 187 MSDIVSFVYEMMLAYSN--------------AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIEELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHHHHHHHH--------------TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--------------cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCChHHHHHHH
Confidence 99999999999987542 0134678999999999999999999999889999999999999999999
Q ss_pred HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccccc-
Q 001398 157 EFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARED- 235 (1085)
Q Consensus 157 ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~- 235 (1085)
|||++|++|++.++++.++++. + + ....+..... ++++.+|.+++|++++++|..++.+ ++.+
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~----l-----~-L~~~~~~l~~-----~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~ 316 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNI----L-----N-LNLFFSKSQE-----QSTDPNFDEHVAKLINAQGVELVAI-KSDPS 316 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHH----H-----H-HHHHHCC----------CCHHHHHHHHHHHHHHHHHHHHH-HTSCC
T ss_pred HHHHHHHHcCCChhhHHHHHHH----H-----h-HHHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHHHHH-ccCcc
Confidence 9999999999765443333332 1 1 1223322111 1456679999999999999998877 5443
Q ss_pred -----------ccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhh
Q 001398 236 -----------TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRI 304 (1085)
Q Consensus 236 -----------~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 304 (1085)
..+..+++++|.++.||+.+++..+++||..++........ . ....
T Consensus 317 ~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~-~----------------~~~~------ 373 (980)
T 3ibv_A 317 ELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS-S----------------KELS------ 373 (980)
T ss_dssp --CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT-S----------------CCCC------
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc-c----------------cccc------
Confidence 45778999999999999999999999999999986321110 0 0000
Q ss_pred hhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 001398 305 LSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAII 384 (1085)
Q Consensus 305 ~~~~~~~i~~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l 384 (1085)
....++++.|+.+++.||.+|++.+.+ .++|+|++++|.+||+++..+++.++.+.|..+++++.+.+...+
T Consensus 374 --~~~~~~l~~Ll~~li~k~~yp~d~~~~------~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 374 --ASLKEFLKSLLEAIIKKMKYDESQEWD------DDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 445 (980)
T ss_dssp --HHHHHHHHHHHHHHHHTTSCCTTCCCC------CCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHccCCCccccc------cccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 012488999999999999998753211 123557777899999999999999999999999994444444433
Q ss_pred hhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc---cCCCChhHHHHHHHHH
Q 001398 385 NSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS---LKWTEPPLVVALGHYL 461 (1085)
Q Consensus 385 ~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~---~~~~dp~l~s~~l~~l 461 (1085)
.+... .-++..|-..|+....+.++..++........+ +.+..+.+ ..++..++. .+..+|.++...++++
T Consensus 446 ~~~l~-~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~-~~~~lp~l----~~ll~~ll~s~i~~~~hp~V~~~~~~~l 519 (980)
T 3ibv_A 446 STAAT-LSPENSWQLIEFALYETYIFGEGLRGPDAFFNE-VDKSPTVL----SQILALVTTSQVCRHPHPLVQLLYMEIL 519 (980)
T ss_dssp HHHTT-SCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCS-SSCCBCHH----HHHHHHHHHSSTTTCCCHHHHHHHHHHH
T ss_pred HHHhc-ccCCCCHHHHHHHHHHHHHHHhhccccccccCc-ccchhHHH----HHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 32100 002345778888888888877765432110001 11112233 344445543 2467889999999999
Q ss_pred HhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHcc
Q 001398 462 DALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREG 541 (1085)
Q Consensus 462 ~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~ 541 (1085)
++|+.|+..||++++.+|+-++. |.+..++ .++||.+||++|.|+|+.+...+.||++.|++.++.++...
T Consensus 520 ~rys~~~~~~~~~l~~~L~~ll~-----~~gl~~~----~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~ 590 (980)
T 3ibv_A 520 VRYASFFDYESAAIPALIEYFVG-----PRGIHNT----NERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNIS 590 (980)
T ss_dssp HHTGGGGGTCCTTHHHHHHHHTS-----TTTTTCC----CTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCC
T ss_pred HHHHHHHhcCchhHHHHHHHHhc-----cccccCC----ChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCc
Confidence 99999999999999999998744 1122221 23689999999999999999999999999999888776632
Q ss_pred ccc-------------------hHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHH
Q 001398 542 RLL-------------------RGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVR 600 (1085)
Q Consensus 542 ~L~-------------------~~e~~~L~Eal~~iss--~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~ 600 (1085)
... ...+..||||++.+++ ..+.+++.++++.+++|+.+.|...--+ .-+++
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~--~~~~~----- 663 (980)
T 3ibv_A 591 VSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSS--DLSAL----- 663 (980)
T ss_dssp CCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT--SCC-------
T ss_pred CCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh--cccCc-----
Confidence 111 1258899999999986 3467899999999999999988532211 11100
Q ss_pred hccCccchhhhHHHHHHHHHHhhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhccCccccccCcH
Q 001398 601 LCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPG 680 (1085)
Q Consensus 601 ~~g~~~~~~~~~~~v~~~~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLP~ll~Llr~~h~l~~P~~~~~l~~ 680 (1085)
+... .+.|.+..++...| |++..+. ..+|+...+..+++-++..+..++. +
T Consensus 664 ---~~~~--~i~~~i~al~~lak--gf~~~~~-----------~~~p~~~~f~~~~~~il~~l~~~~~--~--------- 714 (980)
T 3ibv_A 664 ---ENII--SVYCSLMAIGNFAK--GFPARGS-----------EEVAWLASFNKASDEIFLILDRMGF--N--------- 714 (980)
T ss_dssp ---CHHH--HHHHHHHHHHHHHH--TSCSCC------------CCCSHHHHHHHHHHHHHHHHHHSCC--S---------
T ss_pred ---cHHH--HHHHHHHHHHHHhc--cCCcccC-----------CCCcHHHHHHHHHHHHHHHHHhcCC--c---------
Confidence 1111 55666666666555 4443211 1245666667777776665543110 0
Q ss_pred HHHHHcccCHHHHhhhcCCCCCCcccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCccccc
Q 001398 681 EIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFK 759 (1085)
Q Consensus 681 ~~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~~~-~l~~~fy~ 759 (1085)
..|||.+...+.-+- .+|..+
T Consensus 715 --------------------------------------------------------~~irea~~~~~~r~i~~lg~~~-- 736 (980)
T 3ibv_A 715 --------------------------------------------------------EDIRGAVRFTSGRIINVVGPDM-- 736 (980)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHTTTTHHHH--
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHccHhH--
Confidence 134455544444444 555442
Q ss_pred CCCchHHHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 001398 760 SLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKV 839 (1085)
Q Consensus 760 ~~~l~~l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~l~~~~~~rL~~~W~~i~~~~~~~~~~~ 839 (1085)
.|-++.+...+..+. +.+.+..++.. +.-+|...-.++++ .+..+|+|++.++...|.+ + ++.++
T Consensus 737 ~p~lp~~i~~ll~~~---~~~e~~~fL~l-~~qli~~f~~~~~~-~l~~ll~~l~~~if~~l~~--------~--~~~td 801 (980)
T 3ibv_A 737 LPKVPQLISILLNSI---DMNELVDVLSF-ISQLIHIYKDNMME-ITNRMLPTLLMRIFSSLSA--------A--PQGTD 801 (980)
T ss_dssp TTTHHHHHHHHHHHC---CTTTHHHHHHH-HHHHHHHTTTTSHH-HHHHHHHHHHHHHHHHTTC--------------CC
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC--------C--CCCcH
Confidence 233444555554332 23333333322 23333333333333 3666777777766665541 1 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccccccchhhhhhhhHHHHh--cCcCchHHHHHHHH
Q 001398 840 EVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLL--KHKDLALPALQISL 917 (1085)
Q Consensus 840 E~~eE~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~l~~~~ 917 (1085)
|+ +--++|-|.+..|+..++..+. ...++ .|....+.++..++
T Consensus 802 ~~---r~~~~l~r~~~~fl~~i~~~~~--------------------------------~~v~~s~~n~~~l~~~l~~l~ 846 (980)
T 3ibv_A 802 DA---VKQNDLRKSYISFILQLLNKGF--------------------------------GSILFTEENQVYFDPLINSIL 846 (980)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHTTC--------------------------------TGGGGSHHHHTTHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHhCCc--------------------------------hhhhcCCcchHHHHHHHHHHH
Confidence 43 2457788999999998887532 11111 13344455555555
Q ss_pred hh-hcccchhhhHHHHHhHHHHHHhhhhcc-chhhhHHHHHHHHHHHHHHhccCch--Hhh-----HHHHHHHHHHHHHh
Q 001398 918 EA-FTWTDGEAVTKVSSFCSAVVLLAIQSN-NIELRQFVSKDLFSAIIRGLALESN--AVI-----SADLVGLCREIFIY 988 (1085)
Q Consensus 918 ~~-l~w~Dt~~~~ka~~~~~~l~~~~~~~~-~~~l~~~~~~~~~~a~l~~L~~~~~--~~~-----~~~l~~L~~~iy~~ 988 (1085)
+. ...+|+.+.+.|+.+...++..-..++ -+-+.+|+-+ +.+.|......+.| .|. ..|++.+...||..
T Consensus 847 ~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~ 925 (980)
T 3ibv_A 847 HFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEK 925 (980)
T ss_dssp HHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHH
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHh
Confidence 43 335888888888888777776542211 3448999999 99999999988886 454 47999999999998
Q ss_pred cCCCCchHHHHHHh--CC--CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCc
Q 001398 989 MCDRDPAPRQVLLS--LP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNN 1042 (1085)
Q Consensus 989 l~~~~~~~~~vL~~--lP--~i~~~~l~~f~~~l~~~~s~K~qr~~~k~ll~~~~g~~ 1042 (1085)
.++ ..-+.|.+ +| |+.++..+.|-++|. ....|.=|.-|+.++...+|.+
T Consensus 926 ~g~---~~~~~l~~~~lp~~~~~~~~~~~~~~~l~-~~~~k~f~~~~~~~~~~~~~~~ 979 (980)
T 3ibv_A 926 LGD---IYKSYLVTVYFPTVNFPDVMASEYLQALS-NLDSRSFKQFFQKFIQALKSGN 979 (980)
T ss_dssp HHH---HHHHHHHHTTTTC----CCHHHHHHHC-----------------CHHHHC--
T ss_pred cCH---HHHHHHHHhcCCcCCCCHHHHHHHHHHHh-ccchhhHHHHHHHHHHHhhcCC
Confidence 874 44566644 67 678888899999994 4446666777777777766654
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=8.2e-44 Score=457.45 Aligned_cols=502 Identities=16% Similarity=0.240 Sum_probs=387.0
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccc-CCchHHHHHHHHHHHHhhhhhHH
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHN-EDLEGDRRRLLLRGLTQSLPEIL 81 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~-~dl~~~rr~~L~~~L~~~~p~I~ 81 (1085)
.||++++++.|+|++||++||+|+++|+++++.++.+++++|.||+.|+|||+.+. +++.+.||+.++++|+.++|.|+
T Consensus 117 ~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~ 196 (1023)
T 4hat_C 117 INKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIF 196 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999998754 46889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHH-hhcCChhhhhHHHHHHH
Q 001398 82 PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG-FLLSSPDFRLHACEFFK 160 (1085)
Q Consensus 82 ~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~-~ll~~~~~r~~A~ecL~ 160 (1085)
++++.+++.. ....++.++|+|++.|++|+|+++++++++++.++ .+++++++|.+|++||.
T Consensus 197 ~ll~~iL~~~-----------------~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~~~r~~A~ecL~ 259 (1023)
T 4hat_C 197 KLCFQVLEQG-----------------ASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKCLT 259 (1023)
T ss_dssp HHHHHHHHHC-----------------SSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-----------------CCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998742 12357899999999999999999999999999998 99999999999999999
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHHHHHHHHH-HHHHhhcC-CCC--CCCChhhhHHHHHHHHHHHHhhhhhccccccccc
Q 001398 161 LVSPRKGPADASASEFESAMHDVFQILMKVS-GEFLYRSG-TSA--GAIDESEFEFAEYICESMVSLGTSNLHCIAREDT 236 (1085)
Q Consensus 161 ~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~-~~~~~~~~-~~~--~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~ 236 (1085)
+|++++.+. +. ..++..+..+|...++.. +.++.... ..+ ...++++.+|.+.+|.+++++|..+...++.++.
T Consensus 260 eIv~~~~~~-~~-~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~ 337 (1023)
T 4hat_C 260 EVSNLKIPQ-DN-DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDES 337 (1023)
T ss_dssp HHHTSCCCS-SC-HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGG
T ss_pred HHHccccCC-ch-HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999976421 11 234444555554433322 22110000 000 0124456789999999999999999998876422
Q ss_pred ---cHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhH
Q 001398 237 ---ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDIS 313 (1085)
Q Consensus 237 ---~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~ 313 (1085)
.+...++.|+.++.|+...++..|++||..+....+.++. ...++.+++
T Consensus 338 ~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~----------------------------~~~~~~~~~ 389 (1023)
T 4hat_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL----------------------------KKHIYEEIC 389 (1023)
T ss_dssp GHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTT----------------------------TGGGGHHHH
T ss_pred hhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchH----------------------------HHHHHHHHH
Confidence 3344567899999999999999999999999987654311 122456999
Q ss_pred HHHHHHHHHHhhcccCCC--CCCCCccccccccCCc----chHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhc
Q 001398 314 GAILDISFQRLVKREKAP--GTQGPLELWSDDFEGK----GDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSL 387 (1085)
Q Consensus 314 ~~Ll~v~~~km~~~~~~~--~~~~~~e~~~~dfd~~----~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~ 387 (1085)
.+|+.++++||.+|+++. +++. ++..+ +|..+ +.|..+| +++.+++++.+.++++.+.+.+.+.+++.
T Consensus 390 ~~L~~vli~km~~P~e~~ive~d~-~~~~~-e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~~ 463 (1023)
T 4hat_C 390 SQLRLVIIENMVRPEEVLVVENDE-GEIVR-EFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1023)
T ss_dssp HHHHHHHHHSCCCCTTCCEEECTT-SCEEE-CSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHhcCCCcccccCCCCC-ccHHH-HhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998752 1111 33323 44322 2344444 99999999999999999999998887642
Q ss_pred ccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChh--HHHHHHHHHHhhh
Q 001398 388 LISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPP--LVVALGHYLDALG 465 (1085)
Q Consensus 388 ~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~--l~s~~l~~l~~l~ 465 (1085)
...|-..||....+.||..++.. +.+ .+.+..++..|++.+-..+++||. +++..++++++|+
T Consensus 464 ------~~~W~~~EA~~~a~gaIa~~~~~--------~~e-~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 464 ------EWSWHNINTLSWAIGSISGTMSE--------DTE-KRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp ------TCCHHHHHHHHHHHHHTTTSSCH--------HHH-HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred ------CCCHHHHHHHHHHHHHHHcCCCc--------hhH-HHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 12344455544444444332111 112 366777888888877666666664 5678999999999
Q ss_pred hhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCcc--------chHHHHHHHHHHHH
Q 001398 466 PFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI--------LPHMKDIADTMAYL 537 (1085)
Q Consensus 466 ~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l--------~P~~~~i~~~i~~l 537 (1085)
+|++.||+++++|++++|++|.. ..+.|+.+||.+|.+||+++...+ .||+++|++.+.+.
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~-----------~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~ 597 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHE-----------THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKT 597 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTC-----------SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHH
Confidence 99999999999999999999851 123688999999999999987655 58999998887766
Q ss_pred HHccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHhHHHHhhhChH
Q 001398 538 QREGRLLRGEHNLLGEAFLVMASAA-GIQQQQEVLAWLLEPLSQQWMQL 585 (1085)
Q Consensus 538 ~~~~~L~~~e~~~L~Eal~~iss~~-~~~~q~~~l~~ll~P~~~~W~~~ 585 (1085)
.. ++....+..+|||++.+++.. +.+.+.++++.+|+|+.+.|.+-
T Consensus 598 ~~--~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l 644 (1023)
T 4hat_C 598 TA--DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644 (1023)
T ss_dssp HT--TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HH--hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHH
Confidence 65 688999999999999999854 45579999999999999999753
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.3e-38 Score=417.02 Aligned_cols=506 Identities=16% Similarity=0.234 Sum_probs=374.8
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccc-CCchHHHHHHHHHHHHhhhhhHH
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHN-EDLEGDRRRLLLRGLTQSLPEIL 81 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~-~dl~~~rr~~L~~~L~~~~p~I~ 81 (1085)
.||+++++++|+|++||+.||+++++|+++++.++.++|+++.+|+.|+||++.+. ++++..|+++++..++..++.||
T Consensus 117 ~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~ 196 (1049)
T 3m1i_C 117 INKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIF 196 (1049)
T ss_dssp HHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999998788889999999999999999753 35788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHH-hhcCChhhhhHHHHHHH
Q 001398 82 PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG-FLLSSPDFRLHACEFFK 160 (1085)
Q Consensus 82 ~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~-~ll~~~~~r~~A~ecL~ 160 (1085)
.++...+++.. ...++.++|+|+..|++|+|++.+.++++++.++ .+++++++|..|++||.
T Consensus 197 ~~~~~~l~~~~-----------------~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~~a~~~L~ 259 (1049)
T 3m1i_C 197 KLCFQVLEQGS-----------------SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRAITLKCLT 259 (1049)
T ss_dssp HHHHHHHHHCC-----------------CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----------------CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHHHHHHHHH
Confidence 99998887421 1357899999999999999999999888999987 67789999999999999
Q ss_pred HHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-HHhhcC---CCCCCCChhhhHHHHHHHHHHHHhhhhhccccccc--
Q 001398 161 LVSPRKGPADASASEFESAMHDVFQILMKVSGE-FLYRSG---TSAGAIDESEFEFAEYICESMVSLGTSNLHCIARE-- 234 (1085)
Q Consensus 161 ~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~-~~~~~~---~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~-- 234 (1085)
+|+++++++.. ..|+..+..++...++..+. ++.... ..-....+.+.+|.+.+|++++.++..+...++..
T Consensus 260 ~i~~~~~~~~~--~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 337 (1049)
T 3m1i_C 260 EVSNLKIPQDN--DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDES 337 (1049)
T ss_dssp HHHHCCCCTTC--HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHhCCCCcch--hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 99999754311 11222222232222222211 110000 00000133456799999999999998888776542
Q ss_pred -cccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhH
Q 001398 235 -DTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDIS 313 (1085)
Q Consensus 235 -~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~ 313 (1085)
...+..+++.++.++.|++..++..+++||..+.++.+..+. ......+++
T Consensus 338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~----------------------------~~~~~~~~l 389 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL----------------------------KKHIYEEIC 389 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTT----------------------------CGGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchh----------------------------HHHHHHHHH
Confidence 224667899999999999999999999999999986421100 011224789
Q ss_pred HHHHHHHHHHhhcccCCC--CCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCC
Q 001398 314 GAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLIST 391 (1085)
Q Consensus 314 ~~Ll~v~~~km~~~~~~~--~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~ 391 (1085)
++|+.+++.||.++++.. ++++ +|+.+ +|++|+|.+++|+.++++++.++++.|..++.++.+.+.+.+++.
T Consensus 390 ~~Lv~~ll~~m~~~ed~~~~~dd~-~e~~r-~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~---- 463 (1049)
T 3m1i_C 390 SQLRLVIIENMVRPEEVLVVENDE-GEIVR-EFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS---- 463 (1049)
T ss_dssp HHHHHHHHHTCCCCTTCCEEECTT-SCEEE-CSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSS----
T ss_pred HHHHHHHHHhcCCCcceeeeeCCC-CcchH-hhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCC----
Confidence 999999999999876532 1111 34443 445555567899999999999999999999999999998887531
Q ss_pred CChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCC--CChhHHHHHHHHHHhhhhhhh
Q 001398 392 MPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKW--TEPPLVVALGHYLDALGPFLK 469 (1085)
Q Consensus 392 ~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~--~dp~l~s~~l~~l~~l~~fl~ 469 (1085)
...|-..|+....+.++..+ ..+ ..+ ...+..++..+++.+..... .+|.+++..++++++|++|++
T Consensus 464 --~~~W~~~eaal~algsia~~-------~~~-~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 464 --EWSWHNINTLSWAIGSISGT-------MSE-DTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp --SCCHHHHHHHHHHHHHTTTS-------SCH-HHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHhcc-------cCc-hhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 11234444443333333211 110 111 12233444444432222222 356677789999999999999
Q ss_pred cCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccc--------hHHHHHHHHHHHHHHcc
Q 001398 470 YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL--------PHMKDIADTMAYLQREG 541 (1085)
Q Consensus 470 ~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~--------P~~~~i~~~i~~l~~~~ 541 (1085)
.+|+++++|++++|+.|.. ....||.+||++|.++|+.++..+. ||+++|.+.+..+..
T Consensus 533 ~~~~~l~~vl~~ll~~l~~-----------~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~-- 599 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHE-----------THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-- 599 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTS-----------SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT--
T ss_pred hHHHHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH--
Confidence 9999999999999998751 1347999999999999999887775 999999888887776
Q ss_pred ccchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHhHHHHhhhChH
Q 001398 542 RLLRGEHNLLGEAFLVMASAAG-IQQQQEVLAWLLEPLSQQWMQL 585 (1085)
Q Consensus 542 ~L~~~e~~~L~Eal~~iss~~~-~~~q~~~l~~ll~P~~~~W~~~ 585 (1085)
++...+...+|||++.+++..+ .+.+..+++.+|+|+.+.|.+-
T Consensus 600 ~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~ 644 (1049)
T 3m1i_C 600 DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644 (1049)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999988444 6789999999999999999754
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=2.3e-37 Score=402.46 Aligned_cols=806 Identities=13% Similarity=0.128 Sum_probs=505.0
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcC------ChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhh
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSK------GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQS 76 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~------~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~ 76 (1085)
.+|++.++++|+|++||+.||+++++|+++++. ++.+++.++.+|+.|+||++.+ +. +..||+.+.+.+...
T Consensus 120 r~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~-~~-~~~~r~~~~~~l~~~ 197 (963)
T 2x19_B 120 LTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS-RL-PQYRKGLVRTSLAVE 197 (963)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC-CC----------CCSGGG
T ss_pred HHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc-cC-cHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999875 6778999999999999999873 33 678888888889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcc--cChHHHHHhhcCChhhhhH
Q 001398 77 LPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAK--YGIIHGCGFLLSSPDFRLH 154 (1085)
Q Consensus 77 ~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~--~~ll~~L~~ll~~~~~r~~ 154 (1085)
+|.|++++..++++.. ++ ..++..+|+|+. .|++++.... ..+++.++.++.++++|..
T Consensus 198 ~~~i~~ll~~~l~~~~-----------~~-----~~~~~~~l~~l~---~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 258 (963)
T 2x19_B 198 CGAVFPLLEQLLQQPS-----------SP-----SCVRQKVLKCFS---SWVQLEVPLQDCEALIQAAFAALQDSELFDS 258 (963)
T ss_dssp HHHHHHHHHHHHSCTT-----------CC-----HHHHHHHHHHHH---HHHTSSCCGGGTHHHHHHHHHHTTSTTTHHH
T ss_pred HHHHHHHHHHHHhCCC-----------Cc-----hHHHHHHHHHHH---HHHcCCCCcccchHHHHHHHHHhCCchHHHH
Confidence 9999999988875321 10 137788888864 5666555443 5588888777789999999
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccc-
Q 001398 155 ACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAR- 233 (1085)
Q Consensus 155 A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~- 233 (1085)
|++||.++++++.++ +..+.+..++..++.. ...+... +.++++.+.+.+|++++.++..+...+.+
T Consensus 259 a~~~l~~i~~~~~~~-~~~~~~~~l~~~~~~~----~~~~~~~-------~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 259 SVEAIVNAISQPDAQ-RYVNTLLKLIPLVLGL----QEQLRQA-------VQNGDMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp HHHHHHHHHTCTTGG-GCHHHHHHHHHHHHTT----HHHHHHH-------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcccccc-cCHHHHHHHHHHHHhh----HHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 999999999986433 2334444444433322 1111110 01123468999999999999877665542
Q ss_pred --ccccHHHHHHHHHHhhccc-----hHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhh
Q 001398 234 --EDTILSMYLQQMLGYFQHF-----KIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILS 306 (1085)
Q Consensus 234 --~~~~l~~~L~~lL~~t~hp-----sl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 306 (1085)
....+..+++.++.++.|| +..++..+++||..+.+.....++ ..+....
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~-----------------------~~~~~~~ 383 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEA-----------------------EKQAVYQ 383 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCH-----------------------HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhh-----------------------hhhHHHH
Confidence 2346778999999999984 567899999999999986321100 0000011
Q ss_pred cchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhh
Q 001398 307 FLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINS 386 (1085)
Q Consensus 307 ~~~~~i~~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~ 386 (1085)
....+++++|+.+++.+|.+|++. ++...|.|+.++|.+||+.+.++++.++++.+..+++.+.+.+...+.+
T Consensus 384 ~~~~~~l~~l~~~ll~~~~~p~~~-------~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~ 456 (963)
T 2x19_B 384 QVYRPVYFQLVDVLLHKAQFPSDE-------EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTS 456 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHH-------HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcc-------cccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHh
Confidence 123578899999999999875431 1111222334568999999999999999999999999999999888843
Q ss_pred cccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhh
Q 001398 387 LLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGP 466 (1085)
Q Consensus 387 ~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~ 466 (1085)
. -++..|...|+....+.++..++.... + + .+..+++.+......+|.++...++++++|+.
T Consensus 457 ~----~~~~~w~~~eaal~al~~i~~~~~~~~------~----~----~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~ 518 (963)
T 2x19_B 457 S----EEPYSWQHTEALLYGFQSIAETIDVNY------S----D----VVPGLIGLIPRISISNVQLADTVMFTIGALSE 518 (963)
T ss_dssp C----CCSCCHHHHHHHHHHHHHHTTSCCSSC------C----S----HHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHH
T ss_pred c----CCCCchHHHHHHHHHHHHHHhhcCchh------h----H----HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 2 012347788888888877766643311 0 1 13345555555554688999999999999999
Q ss_pred hhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchH
Q 001398 467 FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRG 546 (1085)
Q Consensus 467 fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~ 546 (1085)
|+..+|++++++++++|+.|.. ..||.+||.+|.++|+.++..+.||+++|.+.+.+++.++.+...
T Consensus 519 ~l~~~~~~l~~vl~~l~~~l~~-------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~ 585 (963)
T 2x19_B 519 WLADHPVMINSVLPLVLHALGN-------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTS 585 (963)
T ss_dssp HHHHCHHHHTTTHHHHHHHTTC-------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHhCHHHHHHHHHHHHHHhCC-------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChH
Confidence 9999999999999999988741 258899999999999999999999999999999988887778889
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHHhccCccchhhhHHHHHHHHHHhhhhc
Q 001398 547 EHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSG 626 (1085)
Q Consensus 547 e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~g~~~~~~~~~~~v~~~~~~lkr~~ 626 (1085)
++..+||+++.+++..+.+.+..+++.+|+|+.+.|.+-. ++ . .+ ...+..+.+.+..+..+.+..+
T Consensus 586 ~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~-~-~~----------~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 586 QCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLA-EE-I-PN----------PSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-SS-C-SC----------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-hC-C-CC----------HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999866677889999999999999996431 10 0 11 1122223333444434333332
Q ss_pred cccccccccCC---CCCCcccccchhhhhhhhhhhHHHHHHHHHhccCccccccCcHHHHHHcccCHHHHhhhcCCCCCC
Q 001398 627 IRKANLNLQSS---SAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPK 703 (1085)
Q Consensus 627 ~~~~~~~s~~~---~~~~~~~~~p~~~~~~~iLP~ll~Llr~~h~l~~P~~~~~l~~~~~~~~~~~~~Er~~~lg~~~~~ 703 (1085)
........+.. ....+...+|+......++|.+++++.... .++
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~------------------------------- 699 (963)
T 2x19_B 653 ISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL--NDA------------------------------- 699 (963)
T ss_dssp SSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT--TCH-------------------------------
T ss_pred CCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc--Cch-------------------------------
Confidence 11110000000 001123456777778888888887776521 121
Q ss_pred cccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchHHHHHHhcCCCCCccccH
Q 001398 704 FSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGSVVVALMENIQSMEFRHI 782 (1085)
Q Consensus 704 ~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~~~-~l~~~fy~~~~l~~l~~al~~~~~~l~~~~l 782 (1085)
.++|.++.+++.+. .+|+.|-.. +.++...+..+...-+...+
T Consensus 700 ----------------------------------~v~e~~~~~l~~~~~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~~ 743 (963)
T 2x19_B 700 ----------------------------------QVVEAVCAIFEKSVKTLLDDFAPM--VPQLCEMLGRMYSTIPQASA 743 (963)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHSSSTTGGG--HHHHHHHHHHHHHHSCCHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHhhccccccc--HHHHHHHHHHHHHcCCccHH
Confidence 11222222222222 222222110 11111111111110000001
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001398 783 RQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMA 862 (1085)
Q Consensus 783 r~ll~~~~~plv~~CP~~~~~~~l~plL~~l~~~~~~rL~~~W~~i~~~~~~~~~~~E~~eE~llr~LTr~~~~ll~~~~ 862 (1085)
=.++..+++-+ ..... ....+.+++..++..+..-+. ++- + . -.++..++..++..++
T Consensus 744 l~l~~~li~~f--~~~~~-~~~~~~~~l~~~~~~~l~~~~--------~~~-~-~---------~pd~~~~~f~ll~~~~ 801 (963)
T 2x19_B 744 LDLTRQLVHIF--AHEPA-HFPPIEALFLLVTSVTLTLFQ--------QGP-R-D---------HPDIVDSFMQLLAQAL 801 (963)
T ss_dssp HHHHHHHHHHH--TTCTT-TCHHHHHHHHHHHHHHHHHHH--------HCT-T-T---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcc-hHHHHHHHHHHHHHHHHHHHh--------hCc-c-c---------CchHHHHHHHHHHHHH
Confidence 11122222211 11111 112233444444444333222 000 0 0 1345567777777776
Q ss_pred cCCCCCCCCCCCCCCCcccccccccccchhhhhhhhHHHHhcCcCchHHHHHHHHhhhcccchhhhHHHHHhHHHHHHhh
Q 001398 863 SSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLA 942 (1085)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~w~Dt~~~~ka~~~~~~l~~~~ 942 (1085)
... ...++..+.....++.++..++.-.|...+..++.|...++...
T Consensus 802 ~~~---------------------------------~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 802 KRK---------------------------------PDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHC---------------------------------GGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HhC---------------------------------cHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 421 01112222236777888888888677777777777777776543
Q ss_pred hhccchhhhHH---HHHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCCCCc-hHHHHHH--hCC--CCCHHHHHHH
Q 001398 943 IQSNNIELRQF---VSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDP-APRQVLL--SLP--CITPQDLLAF 1014 (1085)
Q Consensus 943 ~~~~~~~l~~~---~~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~~~~-~~~~vL~--~lP--~i~~~~l~~f 1014 (1085)
. ..+.+.+| .+..++.+++.++..........++..++..++...+.... -..++|. .+| +++++..++|
T Consensus 849 ~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f 926 (963)
T 2x19_B 849 G--EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTF 926 (963)
T ss_dssp T--SSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHH
T ss_pred C--ChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHH
Confidence 2 12223332 26777778888886544444445555555666654221111 1334442 688 8999999999
Q ss_pred HHHHhcCC-ChHHHHHHHHHHHHhhcCC
Q 001398 1015 EDALTKTA-SPREQKQHMRSLLVLGTGN 1041 (1085)
Q Consensus 1015 ~~~l~~~~-s~K~qr~~~k~ll~~~~g~ 1041 (1085)
-++|...+ ..|.=|+.+++++..+.|.
T Consensus 927 ~~~l~~~~~~~~~f~~~l~~F~~~~r~~ 954 (963)
T 2x19_B 927 SQQILRERVNKRRVKEMVKEFTLLCRGL 954 (963)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHcCc
Confidence 99997665 7777899999999988774
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-36 Score=390.33 Aligned_cols=813 Identities=9% Similarity=0.079 Sum_probs=508.5
Q ss_pred ccccchhHHHHhhhhcccchhhHHHHHHHhhcC-------ChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHh
Q 001398 3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSK-------GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQ 75 (1085)
Q Consensus 3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~-------~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~ 75 (1085)
.+|++.++++|++++|| .||+++++|+++++. ++.++|+++.+|+.|+||++.+ + +..||..+++.+..
T Consensus 102 r~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~-~--~~~~r~~~~~~l~~ 177 (971)
T 2x1g_F 102 LNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVI-H--TSVKRVVLRAEIAK 177 (971)
T ss_dssp HHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHC-C--CSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhcc-C--cHHHHHHHHHHHHH
Confidence 37999999999999999 999999999999876 5679999999999999999863 2 55688888999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccc--cCCcchhcccChHHHHHh----hc---
Q 001398 76 SLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAE--WAPLPDLAKYGIIHGCGF----LL--- 146 (1085)
Q Consensus 76 ~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~--Wip~~~i~~~~ll~~L~~----ll--- 146 (1085)
++|.|++++...++.... ...+ .....++.++|+|++.|+. |+|.+ ....+++.++. ++
T Consensus 178 ~~~~vl~ll~~~l~~~~~------~~~~----~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~L~~~~~~~~ 245 (971)
T 2x1g_F 178 RVQLVIHTVERYLKLQMN------RVWD----AEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLEVVHKCYWPC 245 (971)
T ss_dssp THHHHHHHHHHHHHHHTT------SCCC----HHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhcccC------CCCC----ccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHhhhhhhcccc
Confidence 999999999988875421 0000 1134688999999999999 99998 55568887654 11
Q ss_pred ----------CChhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHH
Q 001398 147 ----------SSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYI 216 (1085)
Q Consensus 147 ----------~~~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l 216 (1085)
+++++|..|++||.+|++++.. .++.+.+..++..++ ++...+.... ..+ |++..++.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~~~~--~~~--d~~~~~~~~~l 316 (971)
T 2x1g_F 246 IHAGDGCMTADENELAESCLKTMVNIIIQPDC-HNYPKTAFVLIKMFL----DSLSEITKTE--WKR--ENDNEDIIVHI 316 (971)
T ss_dssp CC---CCCCHHHHHHHHHHHHHHHHHHHCSGG-GGCHHHHHHHHHHHH----HHHHHHHHHH--SSS--SCSCSHHHHHH
T ss_pred ccccccccCcCCcHHHHHHHHHHHHHHcCccc-cccHHHHHHHHHHHH----HhHHHHHHHH--hcc--cccchHHHHHH
Confidence 5689999999999999998632 234444444444433 2222211110 011 11002588899
Q ss_pred HHHHHHhhhhhccccc----c----ccccHHHHHHHHHHhhcc----c-hHHHHHHHHHHHHHHHHHHhhhhcccccCCC
Q 001398 217 CESMVSLGTSNLHCIA----R----EDTILSMYLQQMLGYFQH----F-KIALHFQSLLFWLALMRDLMSKTKVAHSTGD 283 (1085)
Q Consensus 217 ~e~l~~lg~~~~~~~~----~----~~~~l~~~L~~lL~~t~h----p-sl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~ 283 (1085)
|++++.++..+...+. + ....+..+++.++.++.| + +..++..++.||..+.+...+....
T Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~------ 390 (971)
T 2x1g_F 317 YMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSND------ 390 (971)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccc------
Confidence 9999999977665543 2 224677899999999988 3 7789999999999998753221100
Q ss_pred CCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHH
Q 001398 284 GSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKF 363 (1085)
Q Consensus 284 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~ 363 (1085)
... . ........++.+++.+++.||.+|++.+ +.+.|.+++++|.+||+.+.++++.
T Consensus 391 --------~~~---~-----~~~~~~~~~~~~ll~~l~~~~~~p~~~~-------~~~~d~~e~~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 391 --------EQK---H-----KCWEYIKPLYAHLTRILVRKSEQPDEKS-------LAKWSSDDLECFRCYRQDISDTFMY 447 (971)
T ss_dssp --------------C-----HHHHHHHHHHHHHHHHHHHHTSCCCTTT-------TSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cch---H-----HHHHHHHHHHHHHHHHHHHHhcCCCccc-------ccccCHhHHHHHHHHHHHHHHHHHH
Confidence 000 0 0011224788899999999997765321 1111223346789999999999999
Q ss_pred HhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 001398 364 VASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQL 443 (1085)
Q Consensus 364 i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~l 443 (1085)
++.+.+...++.+.+.+...+.+.... +..|...|+....+.++..++.... .. .+..+++.+
T Consensus 448 ~~~~~~~~~l~~~~~~l~~~l~~~~~~---~~~w~~~eaal~~l~~iae~~~~~~----------~~----~l~~l~~~l 510 (971)
T 2x1g_F 448 CYDVLNDYILEILAAMLDEAIADLQRH---PTHWTKLEACIYSFQSVAEHFGGEE----------KR----QIPRLMRVL 510 (971)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHTTTC----------------C----HHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHHHHhhcChhh----------hH----HHHHHHHHH
Confidence 999999889999888888877643111 1346788988888888866654321 01 233444444
Q ss_pred hccC--CCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccC
Q 001398 444 LSLK--WTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDK 521 (1085)
Q Consensus 444 l~~~--~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~ 521 (1085)
.... ..+|.++...++++++|+.|+..+|++++++++.+++.|. | .|+.+||++|.++|+.+..
T Consensus 511 ~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~--~------------~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 511 AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN--S------------SMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH--S------------SCHHHHHHHHHHHHHHCHH
T ss_pred HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC--h------------HHHHHHHHHHHHHHHHHHH
Confidence 4444 3489999999999999999999999999999999988772 2 3688999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHHh
Q 001398 522 SILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRL 601 (1085)
Q Consensus 522 ~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~ 601 (1085)
.+.||+++|.+.+.+++.++.+...++..+||+++.+++..+.+++..++..+++|+.+.|.+-- ..+..
T Consensus 577 ~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~------~~~~~---- 646 (971)
T 2x1g_F 577 QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC------QADSK---- 646 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH------TC-------
T ss_pred hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH------hcCCC----
Confidence 99999999999999999887888999999999999998855578889999999999999986331 11100
Q ss_pred ccCccchhhhHHHHHHHHHHhhhhccccccccccCCCCCCcccccchhhhhhhhhhhHHHHHHHHHhccCccccccCcHH
Q 001398 602 CSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGE 681 (1085)
Q Consensus 602 ~g~~~~~~~~~~~v~~~~~~lkr~~~~~~~~~s~~~~~~~~~~~~p~~~~~~~iLP~ll~Llr~~h~l~~P~~~~~l~~~ 681 (1085)
+.+.+..+.++++.+.++++--+...... . .+.. ..+|+.+.+..++|-+++++.. |.. .
T Consensus 647 --~~~~~~~~~~~l~~L~~~~~~l~~~~~~~--~---~~~~-~~~~~~~~~~~i~~~l~~~l~~----~~~------~-- 706 (971)
T 2x1g_F 647 --TPAARIRTIFRLNMISTLFSSLNTDVDEQ--A---TDQP-IVQPVLLVMQRTMPIFKRIAEM----WVE------E-- 706 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTC-------------------CCHHHHHTTHHHHHHHHHH----TTT------C--
T ss_pred --ChhhHHHHHHHHHHHHHHHhhcCCCcCcc--c---cccc-CCCchHHHHHHHHHHHHHHHHh----ccc------c--
Confidence 11123344455555555555432111000 0 0000 1355666677777777666542 110 0
Q ss_pred HHHHcccCHHHHhhhcCCCCCCcccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccC
Q 001398 682 IKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKS 760 (1085)
Q Consensus 682 ~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~re~~y~ilg~~~-~l~~~fy~~ 760 (1085)
..++|.++.++|.+. .+|..|=
T Consensus 707 -------------------------------------------------------~~v~e~~~~~~~~~~~~~~~~~~-- 729 (971)
T 2x1g_F 707 -------------------------------------------------------IDVLEAACSAMKHAITNLRSSFQ-- 729 (971)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHC--C--
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHHhhhhhcc--
Confidence 034455555555544 4454441
Q ss_pred CCchHHHHHHhcCCCCCccccHHHHHHHHHHHhhccCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 001398 761 LDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLD-MWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKV 839 (1085)
Q Consensus 761 ~~l~~l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~-~~~~~l~plL~~l~~~~~~rL~~~W~~i~~~~~~~~~~~ 839 (1085)
|-+..+...+...+.. .++ -..+.. +.-++...-.+ -....+.+++.+++.++...|.... +
T Consensus 730 p~l~~~~~~l~~~~~~--~~~-~~~l~l-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~------------~- 792 (971)
T 2x1g_F 730 PMLQDLCLFIVASFQT--RCC-APTLEI-SKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTP------------E- 792 (971)
T ss_dssp THHHHHHHHHHHHCC----CC-HHHHHH-HHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCT------------T-
T ss_pred ccHHHHHHHHHHHHhc--CCc-hHHHHH-HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhccc------------c-
Confidence 1123333444333332 111 122221 22333322221 1223355555665555554442110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccccccchhhhhhhhHHHHhcCcCc-hHHHHHHHHh
Q 001398 840 EVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDL-ALPALQISLE 918 (1085)
Q Consensus 840 E~~eE~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~l~~~~~ 918 (1085)
+..++ .-++.+++..|+..++... + +.++.+ .. ...++.++..
T Consensus 793 ~~~~~--~pd~~~~~f~ll~~~l~~~-----p----------------------------~~~~~s-~~~l~~i~~~~~~ 836 (971)
T 2x1g_F 793 QNFSN--ISDTMETFFGCLTQIIKKI-----P----------------------------QVLEDK-TLAYDRLVFYAQR 836 (971)
T ss_dssp THHHH--THHHHHHHHHHHHHHHHSS-----G----------------------------GGGGCT-TSCHHHHHHHHHH
T ss_pred cCCcc--CchHHHHHHHHHHHHHHhC-----c----------------------------HHHcCC-cccHHHHHHHHHH
Confidence 01111 2356677888888776532 0 111222 34 5778888888
Q ss_pred hhcccchhhhHHHHHhHHHHHHhhhhccchhhhHHH---HHHHHHHHHHHhccCchHhhHHHHHHHHHHHHHhcCCCC-c
Q 001398 919 AFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV---SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRD-P 994 (1085)
Q Consensus 919 ~l~w~Dt~~~~ka~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~a~l~~L~~~~~~~~~~~l~~L~~~iy~~l~~~~-~ 994 (1085)
++.-+|...+..|+.|...++... ...+.+.+++ +..+..+++.++..........++..++..++..+.... +
T Consensus 837 ~l~~~~~~~~~s~~~fl~~~i~~~--~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~ 914 (971)
T 2x1g_F 837 GMTLPESGAIRNSIQFLTHFVMQS--RNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAV 914 (971)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHH
Confidence 888777667667777777766542 1233344444 456666666666433323344445555555554332111 1
Q ss_pred hHHHHHH--hCCC--CCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCc
Q 001398 995 APRQVLL--SLPC--ITPQDLLAFEDALTKTA-SPREQKQHMRSLLVLGTGNN 1042 (1085)
Q Consensus 995 ~~~~vL~--~lP~--i~~~~l~~f~~~l~~~~-s~K~qr~~~k~ll~~~~g~~ 1042 (1085)
-..++|. .+|+ +++++.++|-++|.+.+ +.|.=|+.+|++...+.|..
T Consensus 915 ~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~~ 967 (971)
T 2x1g_F 915 WMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTRGLT 967 (971)
T ss_dssp HHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHcCcc
Confidence 2344453 5774 89999999999996554 78888999999999887754
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.67 E-value=1.4e-13 Score=176.43 Aligned_cols=420 Identities=14% Similarity=0.154 Sum_probs=263.6
Q ss_pred cccchhHHHHhhhhcccchhhHHHHHHHhhcC-ChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHH
Q 001398 4 EKSDSCPCRRVRREGINLWQELFPSLVSLSSK-GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILP 82 (1085)
Q Consensus 4 nKla~vlveivkrewp~~Wp~fl~eL~~l~~~-~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~ 82 (1085)
++++.+++.|++++||..||++++.|++..+. ++..++.++.+|..++|+.....+ + +.+...++.+++
T Consensus 108 ~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~------~----~~~~~~~~~il~ 177 (852)
T 4fdd_A 108 ATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD------S----DVLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH------H----CSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc------h----hhhcchHHHHHH
Confidence 57899999999999999999999999998865 578899999999999988753110 0 001111333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcc-cChHHHHHhhcC--ChhhhhHHHHHH
Q 001398 83 LLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAK-YGIIHGCGFLLS--SPDFRLHACEFF 159 (1085)
Q Consensus 83 ~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~-~~ll~~L~~ll~--~~~~r~~A~ecL 159 (1085)
.+...+.. ....+..+|+++++.|+...+-..... .++++.+..+++ ++.+|..|++||
T Consensus 178 ~l~~~l~~------------------~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 178 KFLQFFKH------------------SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp HHTTTTTC------------------SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHhcC------------------CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33322210 123567788888888887644322111 235666544443 367888888888
Q ss_pred HHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHH
Q 001398 160 KLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILS 239 (1085)
Q Consensus 160 ~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~ 239 (1085)
..++... + ..+. ..+.
T Consensus 240 ~~l~~~~--~----~~~~----------------------------------------------------------~~l~ 255 (852)
T 4fdd_A 240 VMLLEVR--M----DRLL----------------------------------------------------------PHMH 255 (852)
T ss_dssp HHHHHHC--H----HHHG----------------------------------------------------------GGHH
T ss_pred HHHHHhC--H----HHHH----------------------------------------------------------HHHH
Confidence 7776532 1 0000 0122
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHH
Q 001398 240 MYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDI 319 (1085)
Q Consensus 240 ~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~Ll~v 319 (1085)
.+++.++..+++++..+...++.||..+.++...+ +.. +.+++.++.+
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~---------------------------~~~-----~~~~~~l~p~ 303 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK---------------------------DVL-----VRHLPKLIPV 303 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH---------------------------HHH-----TTTHHHHHHH
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH---------------------------HHH-----HHHHHHHHHH
Confidence 34455555666777777888888888765431000 001 2445566666
Q ss_pred HHHHhhcccCCCCCCCCccccccccCCcc-hHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHH
Q 001398 320 SFQRLVKREKAPGTQGPLELWSDDFEGKG-DFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLA 398 (1085)
Q Consensus 320 ~~~km~~~~~~~~~~~~~e~~~~dfd~~~-ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~ 398 (1085)
+...|.+.++..+-.. .+..++|+|+++ +.++.|+.....+..++...|......+...+...+.+. .+.
T Consensus 304 ll~~l~~~e~d~~~~~-~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~--------~~~ 374 (852)
T 4fdd_A 304 LVNGMKYSDIDIILLK-GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--------EWV 374 (852)
T ss_dssp HHHHTSCCHHHHHHHH-C------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS--------SHH
T ss_pred HHHHcCCcHhHHHHhc-CCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--------CHH
Confidence 6777765432100000 000011111111 236788888888888888888777777777777777542 244
Q ss_pred HHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCChhHHHHHHHHHHhhhhhhhc--CCCch
Q 001398 399 VMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKY--YPDAV 475 (1085)
Q Consensus 399 ~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~fl~~--~~~~l 475 (1085)
..++....+.++..++.+. ... .+.+++..++. .+..+|.++...+++++.++.++.. ...++
T Consensus 375 ~R~aa~~alg~i~~~~~~~----------~~~----~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 440 (852)
T 4fdd_A 375 VKESGILVLGAIAEGCMQG----------MIP----YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 440 (852)
T ss_dssp HHHHHHHHHHHTTTTTHHH----------HGG----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH
T ss_pred HHHHHHHHHHHHHhcchHH----------HHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4555555555554433210 011 22333333332 2677889999999999999997754 45678
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHH
Q 001398 476 GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAF 555 (1085)
Q Consensus 476 ~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal 555 (1085)
..++..+++.+. + ....||..||.+|..+++..+..+.||++.+...+..++.. ........+++++
T Consensus 441 ~~ll~~L~~~L~-------d----~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~--~~~~~~~~~~~ai 507 (852)
T 4fdd_A 441 KPLMTELLKRIL-------D----SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK--YQHKNLLILYDAI 507 (852)
T ss_dssp HHHHHHHHHHHT-------C----SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------C----CCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH--hChHHHHHHHHHH
Confidence 888888888764 1 12379999999999999999999999999998888777754 2345556789999
Q ss_pred HHHhcCCCH-HHHHHHHHHHhHHHHhhhC
Q 001398 556 LVMASAAGI-QQQQEVLAWLLEPLSQQWM 583 (1085)
Q Consensus 556 ~~iss~~~~-~~q~~~l~~ll~P~~~~W~ 583 (1085)
..++...+. -.+.+++..+|+++.+.|.
T Consensus 508 ~~l~~~~~~~~~~~~~~~~l~p~l~~~~~ 536 (852)
T 4fdd_A 508 GTLADSVGHHLNKPEYIQMLMPPLIQKWN 536 (852)
T ss_dssp HHHHHHHGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHH
Confidence 999863332 2456799999999999874
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.57 E-value=1.7e-12 Score=165.88 Aligned_cols=423 Identities=11% Similarity=0.024 Sum_probs=260.3
Q ss_pred cccchhHHHHhhhhccc-chhhHHHHHHHhhcC--ChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhH
Q 001398 4 EKSDSCPCRRVRREGIN-LWQELFPSLVSLSSK--GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEI 80 (1085)
Q Consensus 4 nKla~vlveivkrewp~-~Wp~fl~eL~~l~~~--~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I 80 (1085)
+++++++..|++++||. .||++++.|++..+. ++..++.++.+|..+++++.. +. | .+...++.|
T Consensus 113 ~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~---~~---~------~~~~~~~~l 180 (861)
T 2bpt_A 113 NAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP---QS---Q------ALVSSSNNI 180 (861)
T ss_dssp HHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST---TS---S------TTGGGHHHH
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh---hh---h------HHHHHHHHH
Confidence 57889999999999995 999999999998854 678899999999999988542 11 0 123345666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhc---ccChHHHHHhhc--CChhhhhHH
Q 001398 81 LPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLA---KYGIIHGCGFLL--SSPDFRLHA 155 (1085)
Q Consensus 81 ~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~---~~~ll~~L~~ll--~~~~~r~~A 155 (1085)
++.+...+... .....+..+++++++.+++|+..+.-. ...+++.++..+ .++++|..|
T Consensus 181 l~~l~~~l~~~----------------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a 244 (861)
T 2bpt_A 181 LIAIVQGAQST----------------ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAA 244 (861)
T ss_dssp HHHHHHHHSTT----------------CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHhhcCC----------------CCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66665444311 002357789999999998887643211 122566664333 357888888
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccccc
Q 001398 156 CEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARED 235 (1085)
Q Consensus 156 ~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~ 235 (1085)
++||..++.+. ++ .|...+. +
T Consensus 245 ~~~l~~l~~~~--~~----~~~~~l~--------------------------------~--------------------- 265 (861)
T 2bpt_A 245 FGCLCKIMSKY--YT----FMKPYME--------------------------------Q--------------------- 265 (861)
T ss_dssp HHHHHHHHHHH--GG----GCHHHHH--------------------------------H---------------------
T ss_pred HHHHHHHHHHH--HH----HHHHHHH--------------------------------H---------------------
Confidence 88888877543 10 0000000 0
Q ss_pred ccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhh-hhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHH
Q 001398 236 TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMS-KTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISG 314 (1085)
Q Consensus 236 ~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~ 314 (1085)
.+++.++....++...+...++.+|..+.+.... ..+.... + ..|.. . .+ ....++.
T Consensus 266 ----~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~-----~~~~~--~-----~~-----~~~~~~~ 323 (861)
T 2bpt_A 266 ----ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF-P-----QSPLQ--S-----YN-----FALSSIK 323 (861)
T ss_dssp ----THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-T-----TCSCC--C-----CC-----HHHHHHH
T ss_pred ----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc-c-----CCchh--h-----HH-----HHHHHHH
Confidence 1112222333445566777888888888776211 0000000 0 00100 0 00 0123445
Q ss_pred HHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCCh
Q 001398 315 AILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPA 394 (1085)
Q Consensus 315 ~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s 394 (1085)
.++..++..|.+.++ +++| +.++.|+...+.+..++...+...+..+...+...+.+.
T Consensus 324 ~il~~ll~~l~~~~~------------d~~d---~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~------- 381 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNE------------DPED---DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD------- 381 (861)
T ss_dssp HHHHHHHHHTTCCCC------------C-CC---CCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS-------
T ss_pred HHHHHHHHHHHhccc------------cccc---ccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCC-------
Confidence 555555666654321 0111 124778888888888887666666666666666665432
Q ss_pred hhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCChhHHHHHHHHHHhhhhhhhcC--
Q 001398 395 QDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKYY-- 471 (1085)
Q Consensus 395 ~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~fl~~~-- 471 (1085)
.+-..++....+.++..++ .. ..+...+..++..++. .+..+|.++...+++++.+..++..+
T Consensus 382 -~~~~r~~a~~~l~~i~~~~----------~~---~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 382 -NWRNREAAVMAFGSIMDGP----------DK---VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp -SHHHHHHHHHHHHHTSSSS----------CH---HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred -ChhHHHHHHHHHHHHHcCC----------CH---HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 2333444433333332211 10 1122334445554443 35668899999999999999987643
Q ss_pred -CCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhcc----CccchHHHHHHHHHHHHHHccccchH
Q 001398 472 -PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD----KSILPHMKDIADTMAYLQREGRLLRG 546 (1085)
Q Consensus 472 -~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~----~~l~P~~~~i~~~i~~l~~~~~L~~~ 546 (1085)
++++..++..+++.+. ++ ..+|..||.+|..+++... ..+.||++.+...+..+....+....
T Consensus 448 ~~~~~~~~l~~l~~~l~-------~~-----~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~ 515 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQ-------DH-----PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFN 515 (861)
T ss_dssp TTTTHHHHHHHHHHHHT-------SC-----HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGG
T ss_pred CHHHHHHHHHHHHHHhc-------cC-----hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchH
Confidence 5688899998888764 11 3689999999999999864 77889999998887777764444455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhCh
Q 001398 547 EHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQ 584 (1085)
Q Consensus 547 e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W~~ 584 (1085)
-+...+++++.++...+. ....++..+++++.+.|.+
T Consensus 516 vr~~a~~al~~l~~~~~~-~~~~~~~~l~~~l~~~l~~ 552 (861)
T 2bpt_A 516 ARASAFSALTTMVEYATD-TVAETSASISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcch-hhHHHHHHHHHHHHHHHHH
Confidence 677889999999874443 3456778888888888753
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.52 E-value=2e-12 Score=167.59 Aligned_cols=471 Identities=13% Similarity=0.084 Sum_probs=256.6
Q ss_pred cccchhHHHHhhhhcccchhhHHHHHHHhhcC-ChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHH
Q 001398 4 EKSDSCPCRRVRREGINLWQELFPSLVSLSSK-GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILP 82 (1085)
Q Consensus 4 nKla~vlveivkrewp~~Wp~fl~eL~~l~~~-~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~ 82 (1085)
+|++.+++.|++++||.+||+++++|+++.+. ++...+.+|.+|..++++.-.... ...-+.++...+...+|.+++
T Consensus 103 ~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~--~~~~~~~l~~~l~~~~~~ll~ 180 (960)
T 1wa5_C 103 VQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR--SDELFLEIKLVLDVFTAPFLN 180 (960)
T ss_dssp HHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999998854 467889999999999886532111 112233555556666776666
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCChhhhhHHHHHHHHH
Q 001398 83 LLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLV 162 (1085)
Q Consensus 83 ~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~r~~A~ecL~~i 162 (1085)
++..+.+. . ... .++..........+..+++++.. +.|..........+-..+ ..+..+
T Consensus 181 ~~~~~~~~-l----~~~-~~~~~~~~~~~~~~~~~~k~~~~-l~~~~~~~~~~~~~~~~~--------------~~~~~~ 239 (960)
T 1wa5_C 181 LLKTVDEQ-I----TAN-ENNKASLNILFDVLLVLIKLYYD-FNCQDIPEFFEDNIQVGM--------------GIFHKY 239 (960)
T ss_dssp HHHHHHHH-T----TCC-C--CHHHHHHHHHHHHHHHHHHH-HHSSCCCHHHHHTHHHHH--------------HHHHHH
T ss_pred HHHHHHHH-H----Hhc-CCCHHHHHHHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHH--------------HHHHHH
Confidence 55433211 1 000 00101112233455667777644 445555443332221111 111122
Q ss_pred cCCCCCC-----CCCh-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccc
Q 001398 163 SPRKGPA-----DASA-SEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDT 236 (1085)
Q Consensus 163 ~sRk~~~-----~~~~-~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~ 236 (1085)
+....+. +++. ..... ..+.+++.++.+...+-..+. .
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~---------------------------------vk~~~~~~l~~l~~~~~~~f~---~ 283 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIK---------------------------------VKSSIQELVQLYTTRYEDVFG---P 283 (960)
T ss_dssp HSCCSCCCC------CCCHHHH---------------------------------HHHHHHHHHHHHHHHCHHHHH---H
T ss_pred HcCCCCcccCCcccccccHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHH---H
Confidence 2221000 0000 00000 111112222211111110000 0
Q ss_pred cHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHH-hhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchh
Q 001398 237 ILSMYLQQMLGYFQ-----HFKIALHFQSLLFWLALMRDL-MSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLND 310 (1085)
Q Consensus 237 ~l~~~L~~lL~~t~-----hpsl~ls~~~l~~W~~lLr~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 310 (1085)
.+..+++.++.+.. ..+..+...++.||.++.+.. ..+ .+..+
T Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~-------------------------------~~~~~ 332 (960)
T 1wa5_C 284 MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE-------------------------------IFNNE 332 (960)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG-------------------------------GGCSH
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHH-------------------------------HHcCc
Confidence 11222233332221 234566778889999876541 111 01123
Q ss_pred hhHHHHH-HHHHHHhhcccCCCCC--CCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhc
Q 001398 311 DISGAIL-DISFQRLVKREKAPGT--QGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSL 387 (1085)
Q Consensus 311 ~i~~~Ll-~v~~~km~~~~~~~~~--~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~ 387 (1085)
+++++++ .+++..|...++..+. ....+|.++|.| ++++.+.|+...++++.++...+......+.+.+.+.+...
T Consensus 333 ~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e-~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~ 411 (960)
T 1wa5_C 333 SAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQY 411 (960)
T ss_dssp HHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH-C----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccC-cccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHh
Confidence 6788888 5778888764432111 001233333343 34567999999999999999999888877777777776532
Q ss_pred ccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH-HHHHHhccCCCChhHHHHHHHHHHhhhh
Q 001398 388 LISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG-LLRQLLSLKWTEPPLVVALGHYLDALGP 466 (1085)
Q Consensus 388 ~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~-Ll~~ll~~~~~dp~l~s~~l~~l~~l~~ 466 (1085)
... .++.|..-||....+.++..+............. ...+...+.. ++..+-..+..+|.++...++++++|..
T Consensus 412 ~~~--~~~~w~~reaal~algaia~~~~~~~~~~~~~~~--~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~ 487 (960)
T 1wa5_C 412 MSD--PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNN--LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRN 487 (960)
T ss_dssp HC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT--TCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred ccC--cchhHHHHHHHHHHHHHHHHHhccccCCcccccc--cccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHh
Confidence 111 1234778899999888886542110001110000 0012222222 2332322222489999999999999998
Q ss_pred hhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHh-----------ccCccchHHHHHHHHHH
Q 001398 467 FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-----------SDKSILPHMKDIADTMA 535 (1085)
Q Consensus 467 fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~-----------~~~~l~P~~~~i~~~i~ 535 (1085)
++ .++.+..+++.++..|. + ....||.+||.+|.+++.. .+..+.||++.+.+.+-
T Consensus 488 ~~--~~~~l~~~l~~l~~~L~-------d----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~ 554 (960)
T 1wa5_C 488 QL--TKAQLIELMPILATFLQ-------T----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI 554 (960)
T ss_dssp GS--CHHHHHHHHHHHHHHTT-------C----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHH
T ss_pred hC--CHHHHHHHHHHHHHHhC-------C----CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHH
Confidence 76 45677777777766653 1 1357999999999999984 24569999999988888
Q ss_pred HHHHcc-c--cchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhC
Q 001398 536 YLQREG-R--LLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWM 583 (1085)
Q Consensus 536 ~l~~~~-~--L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W~ 583 (1085)
.++... . ....+.-.+++++..++...+.+- ..++..+++++...|.
T Consensus 555 ~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~-~p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 555 ALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-QPLFPQLLAQFIEIVT 604 (960)
T ss_dssp HHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 777653 1 111245688999988765222221 1366677777777764
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=1.6e-10 Score=147.98 Aligned_cols=422 Identities=12% Similarity=0.067 Sum_probs=249.4
Q ss_pred cccchhHHHHhhhhcc-cchhhHHHHHHHhhcC---ChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhh
Q 001398 4 EKSDSCPCRRVRREGI-NLWQELFPSLVSLSSK---GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPE 79 (1085)
Q Consensus 4 nKla~vlveivkrewp-~~Wp~fl~eL~~l~~~---~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~ 79 (1085)
+++++++.+|++++|| ..||++++.|.+..+. ++..++.++.+|..+++++.. + .+...++.
T Consensus 107 ~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~---~-----------~~~~~~~~ 172 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP---E-----------QLQDKSNE 172 (876)
T ss_dssp CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH---H-----------HHGGGHHH
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH---h-----------hHHhHHHH
Confidence 5788999999999999 9999999999998754 567889999999999987531 0 13444666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchh---cccChHHHHHhhcC--ChhhhhH
Q 001398 80 ILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL---AKYGIIHGCGFLLS--SPDFRLH 154 (1085)
Q Consensus 80 I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i---~~~~ll~~L~~ll~--~~~~r~~ 154 (1085)
+++.+...+... + ....+...++++++.++.+++.+.- ....+++.+...+. ++++|..
T Consensus 173 ll~~l~~~l~~~-----------~-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 173 ILTAIIQGMRKE-----------E-----PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HHHHHHHHHSTT-----------C-----SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHhhcCC-----------C-----CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 666666544311 0 0124667788888887776543211 01125565543333 4677888
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccc
Q 001398 155 ACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARE 234 (1085)
Q Consensus 155 A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~ 234 (1085)
|++||..++.+. ++.-.+.+.
T Consensus 237 a~~~l~~l~~~~--~~~~~~~~~--------------------------------------------------------- 257 (876)
T 1qgr_A 237 ALQNLVKIMSLY--YQYMETYMG--------------------------------------------------------- 257 (876)
T ss_dssp HHHHHHHHHHHS--GGGCHHHHT---------------------------------------------------------
T ss_pred HHHHHHHHHHHh--HHHHHHHHH---------------------------------------------------------
Confidence 888888777654 210000000
Q ss_pred cccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhh----hhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchh
Q 001398 235 DTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMS----KTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLND 310 (1085)
Q Consensus 235 ~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 310 (1085)
..+++.++....+++..+...++.+|..+.+.... ..+...... .|.. .... .. .
T Consensus 258 ----~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~--~~~~----~~-----~ 316 (876)
T 1qgr_A 258 ----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR------PPEH--TSKF----YA-----K 316 (876)
T ss_dssp ----TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------CCSS--CCCC----HH-----H
T ss_pred ----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCC------Cccc--hhHH----HH-----H
Confidence 01223333334455556667777788777765210 000000000 0000 0000 00 1
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccC
Q 001398 311 DISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLIS 390 (1085)
Q Consensus 311 ~i~~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~ 390 (1085)
..+..++..+.+.|.+.++ |.| ++.++.|+...+.+..++...+...+..+...+...+.+.
T Consensus 317 ~~~~~ll~~ll~~l~~~~~-------------d~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~--- 378 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDE-------------NDD--DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--- 378 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCS-------------SCC--TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS---
T ss_pred HHHHHHhHHHHHHhhcccc-------------ccc--ccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC---
Confidence 2334444455555543221 111 1225788888888888887777655666565555555432
Q ss_pred CCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCChhHHHHHHHHHHhhhhhhh
Q 001398 391 TMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLK 469 (1085)
Q Consensus 391 ~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~fl~ 469 (1085)
.+...++....+..+..++ .. ..+...+.+++..++. .+..+|.++...+++++.+...+.
T Consensus 379 -----~~~~r~~a~~~l~~i~~~~----------~~---~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 379 -----DWRYRDAAVMAFGCILEGP----------EP---SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp -----SHHHHHHHHHHHHHTSSSS----------CH---HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred -----ChHHHHHHHHHHHHHHcCC----------CH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 2333344333333332211 10 1111223333333332 256778999999999999888765
Q ss_pred c---CCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhcc--------------CccchHHHHHHH
Q 001398 470 Y---YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD--------------KSILPHMKDIAD 532 (1085)
Q Consensus 470 ~---~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~--------------~~l~P~~~~i~~ 532 (1085)
. .++++..+++.++..+. + . .+||..||.+|.+++.... ..+.||++.+..
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~-------~----~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~ 508 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLS-------A----E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTT-------S----C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHc-------C----C-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHH
Confidence 4 45788899999988764 1 1 3689999999999998854 458899999987
Q ss_pred HHHHHHHcccc-chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhhhCh
Q 001398 533 TMAYLQREGRL-LRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQ 584 (1085)
Q Consensus 533 ~i~~l~~~~~L-~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~W~~ 584 (1085)
.+..++..... ...-+...+|++..++...+. ....++..+++++.+.|..
T Consensus 509 ~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~ 560 (876)
T 1qgr_A 509 KLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK-DCYPAVQKTTLVIMERLQQ 560 (876)
T ss_dssp HHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-hhHHHHHHHHHHHHHHHHH
Confidence 77766654221 123456799999999875544 3456889999999988863
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.82 E-value=1.3e-07 Score=111.25 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=187.5
Q ss_pred cccchhHHHHhhhhccc-chhhHHHHHHHhhcC---ChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhh
Q 001398 4 EKSDSCPCRRVRREGIN-LWQELFPSLVSLSSK---GPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPE 79 (1085)
Q Consensus 4 nKla~vlveivkrewp~-~Wp~fl~eL~~l~~~---~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~ 79 (1085)
++++.++++|++++||. .||++++.|++..+. ++..++.++.+|..++++... . . +...++.
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~-~------------~~~~~~~ 172 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-E-Q------------LQDKSNE 172 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-G-G------------TGGGHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc-h-h------------hHhHHHH
Confidence 67899999999999996 999999999998754 578899999999999998742 1 0 2233455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchh---cccChHHHHHhhc--CChhhhhH
Q 001398 80 ILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL---AKYGIIHGCGFLL--SSPDFRLH 154 (1085)
Q Consensus 80 I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i---~~~~ll~~L~~ll--~~~~~r~~ 154 (1085)
+++.+...+... + ....+..+++++++.+++++.-..- ...-+++.+...+ .++++|..
T Consensus 173 ll~~l~~~l~~~-----------~-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 173 ILTAIIQGMRKE-----------E-----PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHHHHHHSTT-----------C-----CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHhCCC-----------C-----CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 666665554311 0 0135677888888877665431110 0011344443222 24666677
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccc
Q 001398 155 ACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARE 234 (1085)
Q Consensus 155 A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~ 234 (1085)
+++||..++.+. ++ .+..
T Consensus 237 ~~~~l~~l~~~~--~~-----------------------------------------------------------~~~~- 254 (462)
T 1ibr_B 237 ALQNLVKIMSLY--YQ-----------------------------------------------------------YMET- 254 (462)
T ss_dssp HHHHHHHHHHHC--GG-----------------------------------------------------------GCTT-
T ss_pred HHHHHHHHHHHH--HH-----------------------------------------------------------HHHH-
Confidence 777776666543 10 0000
Q ss_pred cccHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhH
Q 001398 235 DTILS-MYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDIS 313 (1085)
Q Consensus 235 ~~~l~-~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~ 313 (1085)
.+. .+++.++..+.+++..+...++.||..+.+............. ..+.|.. ... .. +.+..+
T Consensus 255 --~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~----~~-----~~~~~~ 319 (462)
T 1ibr_B 255 --YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA---EQGRPPE-HTS----KF-----YAKGAL 319 (462)
T ss_dssp --TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTT---CSSSCSS-CCC----CC-----HHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCcc-chh----HH-----HHHHHh
Confidence 001 1222233333445556666777888877765211100000000 0000000 000 00 001223
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCC
Q 001398 314 GAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMP 393 (1085)
Q Consensus 314 ~~Ll~v~~~km~~~~~~~~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~ 393 (1085)
+.++..+.+.|...++ | .+++.++.|+...+.+..++...+...+..+...+...+.+.
T Consensus 320 ~~l~p~l~~~l~~~d~-------------d--~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~------ 378 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDE-------------N--DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP------ 378 (462)
T ss_dssp HHHHHHHHHHTTCCCS-------------S--CCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS------
T ss_pred hhccHHHHHHHHhccc-------------c--cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC------
Confidence 4444444444432110 1 111224778888899999988888777777777776666532
Q ss_pred hhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhc---
Q 001398 394 AQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKY--- 470 (1085)
Q Consensus 394 s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~--- 470 (1085)
.|...++....+.++..|+.... .. +....+++.+... .+..+|.++...+++++.+...+..
T Consensus 379 --~~~~r~aal~~l~~l~~~~~~~~--~~----~~l~~~~~~l~~~------l~d~~~~Vr~~a~~~l~~~~~~~~~~~~ 444 (462)
T 1ibr_B 379 --DWRYRDAAVMAFGCILEGPEPSQ--LK----PLVIQAMPTLIEL------MKDPSVVVRDTAAWTVGRICELLPEAAI 444 (462)
T ss_dssp --SHHHHHHHHHHHHHTSSSSCTTT--TC----TTTTTHHHHHHHG------GGCSCHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred --ChHHHHHHHHHHHHHhcCCcHHH--HH----HHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 34555666666655554432100 00 0112222222222 2567899999999999999987765
Q ss_pred CCCchHHHHHHHHHhh
Q 001398 471 YPDAVGGVISKLFELL 486 (1085)
Q Consensus 471 ~~~~l~~VL~klfe~l 486 (1085)
.++++..+++.++..|
T Consensus 445 ~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 445 NDVYLAPLLQCLIEGL 460 (462)
T ss_dssp STTTHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHh
Confidence 3578888888886654
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.85 E-value=0.012 Score=74.94 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=76.8
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhc-CCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccch
Q 001398 447 KWTEPPLVVALGHYLDALGPFLKY-YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILP 525 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~~-~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P 525 (1085)
+..++.++...++.++.+..-+.. ..+++..++..++..+.. |. ..+.+|..|+.++-||+..+|..+.|
T Consensus 680 ~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~-~~--------~~~~~~~~a~~~igrl~~~~~~~~~~ 750 (852)
T 4fdd_A 680 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR-PN--------TPKTLLENTAITIGRLGYVCPQEVAP 750 (852)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTC-SS--------CCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCC-CC--------CCchHHHHHHHHHHHHHHhCHHHhCc
Confidence 566788999999998888776532 356778888888887652 21 23479999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc
Q 001398 526 HMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 526 ~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss 560 (1085)
|+++++...-..... .=+..|+..-+.++..+..
T Consensus 751 ~l~~~~~~~~~~l~~-~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 751 MLQQFIRPWCTSLRN-IRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHH
Confidence 999986655444432 1224578888888877764
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.59 E-value=0.0097 Score=78.89 Aligned_cols=409 Identities=9% Similarity=0.005 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHhccc----cCCcchhcccChHHHHHhhcC--ChhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHH
Q 001398 112 ATVTATLNAINAYAE----WAPLPDLAKYGIIHGCGFLLS--SPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQ 185 (1085)
Q Consensus 112 ~~v~~aL~tl~~yl~----Wip~~~i~~~~ll~~L~~ll~--~~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~~ 185 (1085)
.+...++.++...++ ++.. ++ ..+++.+...+. ++.+|..|+.||..++..... ..|+.+|..+..
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l~~-~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~-----~~~~~~l~~l~~ 220 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLLVN-FH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-----IVFVDLIEHLLS 220 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCTT-TH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhHHHH-HH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHH
Confidence 355566666655552 3322 21 336666643333 378999999999999875421 123334444432
Q ss_pred HHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 001398 186 ILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWL 265 (1085)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~ 265 (1085)
. +.. ..+ .+......+.++.+....|..... .+...++.++..+.+++..+...++..|.
T Consensus 221 ~----L~~--------~~~-~~~r~~a~~~l~~l~~~~~~~~~~-------~l~~l~~~ll~~l~d~~~~vR~~a~~~l~ 280 (1230)
T 1u6g_C 221 E----LSK--------NDS-MSTTRTYIQCIAAISRQAGHRIGE-------YLEKIIPLVVKFCNVDDDELREYCIQAFE 280 (1230)
T ss_dssp H----HHH--------TCS-SCSCTTHHHHHHHHHHHSSGGGTT-------SCTTHHHHHHHHHSSCCTTTHHHHHHHHH
T ss_pred H----hcc--------CCc-hhHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2 111 010 111222455666555555542222 23456778888888888888888888777
Q ss_pred HHHHHHhhhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcchhhhHHHHHHHHHHHhhcccCCC--CCCC----Ccc-
Q 001398 266 ALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAP--GTQG----PLE- 338 (1085)
Q Consensus 266 ~lLr~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~Ll~v~~~km~~~~~~~--~~~~----~~e- 338 (1085)
.+.+... +. + ..++++++..+.+.|.+.++.. ++.. ..+
T Consensus 281 ~l~~~~~-~~----------------------------~-----~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~ 326 (1230)
T 1u6g_C 281 SFVRRCP-KE----------------------------V-----YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 326 (1230)
T ss_dssp HHHHCTT-CC----------------------------C-----HHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHCh-HH----------------------------H-----HHhHHHHHHHHHHHhCCCCCCCCccccccccccccc
Confidence 7766411 00 0 1334444444444444321110 0000 000
Q ss_pred -cccc------ccCCcch-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHH
Q 001398 339 -LWSD------DFEGKGD-FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENV 410 (1085)
Q Consensus 339 -~~~~------dfd~~~e-f~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav 410 (1085)
..++ +|.++++ .+..|+...+.+..++...|.....++...+...+... . .........+...+ ..+
T Consensus 327 ~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~---d~~~~Vr~~a~~~l-~~l 401 (1230)
T 1u6g_C 327 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-K---EREENVKADVFHAY-LSL 401 (1230)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-S---CSSSHHHHHHHHHH-HHH
T ss_pred ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc-C---CCchHHHHHHHHHH-HHH
Confidence 0001 1111112 26789998899888887776533344333333322211 0 11112233333332 223
Q ss_pred HHhhhc---CCC---CCCCC-ChHHHHHHHHHHHHHHHHHhc-cCCCChhHHHHHHHHHHhhhhhhhcCC----CchHHH
Q 001398 411 VSAVFD---GSN---QFGGA-NSEVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKYYP----DAVGGV 478 (1085)
Q Consensus 411 ~~~~~~---~~~---~~~~~-~~~~~~~l~~~l~~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~fl~~~~----~~l~~V 478 (1085)
+..+-. |.. ++.+. +. ...+...+..++..+.. ++..++.++...+..++.+. +..+ +++..+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~---~~~~~~l~~~l~~l 476 (1230)
T 1u6g_C 402 LKQTRPVQSWLCDPDAMEQGETP--LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV---NVLPGALTQHIPVL 476 (1230)
T ss_dssp HHHHCCC------------CCCH--HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH---HHSTTTTGGGHHHH
T ss_pred HHHhccccccccCccccccccch--HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHH---HHchhhhHHHHHHH
Confidence 232211 000 00000 00 11222233333333332 35667777766555555444 3333 345566
Q ss_pred HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHH
Q 001398 479 ISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD-KSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLV 557 (1085)
Q Consensus 479 L~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~-~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~ 557 (1085)
+..+++.|. ++.. ++.+|..++..+..+.+.++ ..+.||++.+...+-....... ..-+..-..++..
T Consensus 477 l~~l~~~L~-------d~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~--~~v~~~al~~l~~ 545 (1230)
T 1u6g_C 477 VPGIIFSLN-------DKSS--SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF--YKITSEALLVTQQ 545 (1230)
T ss_dssp HHHHHHHTT-------CSSS--CHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHc-------CCCC--cchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc--hHHHHHHHHHHHH
Confidence 666666554 1111 35789999999999998764 4588998888666655443321 1111111223333
Q ss_pred Hhc-CCC-----HHHHHHHHHHHhHHHHhhhC----hHhHHhhhcCChHHHHHhcc
Q 001398 558 MAS-AAG-----IQQQQEVLAWLLEPLSQQWM----QLEWQNNYLSEPLGLVRLCS 603 (1085)
Q Consensus 558 iss-~~~-----~~~q~~~l~~ll~P~~~~W~----~~~~~~~~l~~~~~f~~~~g 603 (1085)
++. ..+ ...-..++..+++.+...+. +++.+.++......++..+|
T Consensus 546 l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 546 LVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 332 111 11223566777777766662 23344333333344555555
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.12 E-value=0.3 Score=61.56 Aligned_cols=90 Identities=8% Similarity=0.056 Sum_probs=58.4
Q ss_pred CChhHHHHHHHHHHhhhhhhhcC-CCchHHHHHHHHHhhccCCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcc---Ccc
Q 001398 449 TEPPLVVALGHYLDALGPFLKYY-PDAVGGVISKLFELLTSLPFVFKDP-STNSARHARLQICTSFIRIAKTSD---KSI 523 (1085)
Q Consensus 449 ~dp~l~s~~l~~l~~l~~fl~~~-~~~l~~VL~klfe~l~~~p~~~~~~-~~~~~~~vR~~A~~~f~ri~~~~~---~~l 523 (1085)
.|+.++...+.+++.+....... .+++..++..+++.+...++ ..++ ..+...++|..++.++..+++... ..+
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~ 772 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE-NGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEAL 772 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 35778888877777776654322 23456677777666552121 1111 012345799999999999998865 668
Q ss_pred chHHHHHHHHHHHHHH
Q 001398 524 LPHMKDIADTMAYLQR 539 (1085)
Q Consensus 524 ~P~~~~i~~~i~~l~~ 539 (1085)
.||++.+.+.+.....
T Consensus 773 ~~~~~~i~~~l~~~~~ 788 (861)
T 2bpt_A 773 FPYVGTIFQFIAQVAE 788 (861)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8999998777765543
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.81 E-value=1.2 Score=56.17 Aligned_cols=110 Identities=7% Similarity=0.002 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHHhhhhhhhc-CCCchHHHHHHHHHhhccCCCCCCCCCc-hHHHHHHHHHHHHHHHHHHhcc-------
Q 001398 450 EPPLVVALGHYLDALGPFLKY-YPDAVGGVISKLFELLTSLPFVFKDPST-NSARHARLQICTSFIRIAKTSD------- 520 (1085)
Q Consensus 450 dp~l~s~~l~~l~~l~~fl~~-~~~~l~~VL~klfe~l~~~p~~~~~~~~-~~~~~vR~~A~~~f~ri~~~~~------- 520 (1085)
++.++...+++++.+..-+.. ...+++.++..+...+..-++ ..++.. +-...+|..+..++..+++...
T Consensus 706 ~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~ 784 (876)
T 1qgr_A 706 HRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD-KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH 784 (876)
T ss_dssp CGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred cHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 456777777777776653322 234677777777665541110 111111 1134799999999998888743
Q ss_pred ---CccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc
Q 001398 521 ---KSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 521 ---~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss 560 (1085)
..+.||++.+.+.+..+......+..-|..-.++++.++.
T Consensus 785 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 785 PDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp GGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4688999998877765554322244556666667777665
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.22 E-value=0.89 Score=60.01 Aligned_cols=122 Identities=7% Similarity=-0.059 Sum_probs=71.8
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhc----CC----CchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 001398 447 KWTEPPLVVALGHYLDALGPFLKY----YP----DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT 518 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~~----~~----~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~ 518 (1085)
+..++.++...+.++..+...+.. .+ +++..++..++..+.. . +....+|..|...+-.++..
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~-----~----d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA-----A----DIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC-----S----SSCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc-----c----CCCHHHHHHHHHHHHHHHHH
Confidence 445666766666667766655543 11 2334455555444421 1 12337999999999999999
Q ss_pred ccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHhh
Q 001398 519 SDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQ 581 (1085)
Q Consensus 519 ~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~~ 581 (1085)
.+..+.|++..+...+.+.+.+. ..+.....++..++.......-..++..+++.+.+.
T Consensus 600 ~g~~~~~~~~~~l~~L~~~l~~e----~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~ 658 (1230)
T 1u6g_C 600 LGDNLGSDLPNTLQIFLERLKNE----ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASF 658 (1230)
T ss_dssp TGGGCCTHHHHHHHHHHHHTTSS----SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHH
T ss_pred hCchhhhhHHHHHHHHHHHhccc----hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence 99889999999877766544432 234445556666654221111235556666555543
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.01 E-value=1.8 Score=51.45 Aligned_cols=115 Identities=11% Similarity=-0.014 Sum_probs=63.9
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchH
Q 001398 447 KWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH 526 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~ 526 (1085)
+..+..++...+..++.+...+... .+.+.++..++..+. + ....||..|+..+-.+++..+... +
T Consensus 412 ~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~-------d----~~~~Vr~~a~~~l~~l~~~~~~~~--~ 477 (588)
T 1b3u_A 412 EDAKWRVRLAIIEYMPLLAGQLGVE-FFDEKLNSLCMAWLV-------D----HVYAIREAATSNLKKLVEKFGKEW--A 477 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHHGGG-------C----SSHHHHHHHHHHHHHHHHHHCHHH--H
T ss_pred cCCCchHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHhc-------C----CcHHHHHHHHHHHHHHHHHhCchh--H
Confidence 4567778888777777776544322 123455555555443 1 234799999999999999865431 2
Q ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHh
Q 001398 527 MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 580 (1085)
Q Consensus 527 ~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~P~~~ 580 (1085)
++.+...+..+.. .-.+.-|....++++.++...+. ..++..+++++..
T Consensus 478 ~~~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~ 526 (588)
T 1b3u_A 478 HATIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLR 526 (588)
T ss_dssp HHHTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHh
Confidence 3444333333222 22345556666777666542221 2244555554443
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.41 E-value=5.7 Score=47.74 Aligned_cols=161 Identities=9% Similarity=0.126 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 001398 351 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQL 430 (1085)
Q Consensus 351 ~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~ 430 (1085)
.+||+....-+..++...|.. ..|+.+.+...+... ..+..-|+.. .+..++...+.. +.
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~-~~~~v~~Ll~ll~~~-------~~~v~~e~i~-~l~~ii~~~p~~---~~-------- 426 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQS-AERCVSTLLDLIQTK-------VNYVVQEAIV-VIRDIFRKYPNK---YE-------- 426 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHTC-------CHHHHHHHHH-HHHHHHHHSCSS---CC--------
T ss_pred HHHHHHHHHHHHHHHHhChhH-HHHHHHHHHHHHccc-------chHHHHHHHH-HHHHHHHHCcch---HH--------
Confidence 468888888888888887754 456666777776542 1244445433 333344432221 10
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHH
Q 001398 431 SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICT 510 (1085)
Q Consensus 431 ~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~ 510 (1085)
. .+..|++.+. +..+|.++...+|+++.|+..... .+.+++.+.+.+ .. ....+|..+.+
T Consensus 427 ~---~v~~L~~~l~--~~~~~~~~~~~~wilGey~~~~~~----~~~~l~~l~~~~---~~--------~~~~vr~~~l~ 486 (591)
T 2vgl_B 427 S---IIATLCENLD--SLDEPDARAAMIWIVGEYAERIDN----ADELLESFLEGF---HD--------ESTQVQLTLLT 486 (591)
T ss_dssp T---THHHHHHTTT--TCCSHHHHHHHHHHHHTTCTTCTT----HHHHHHHHSTTC---SS--------SCHHHHHHHHH
T ss_pred H---HHHHHHHHHH--hccCHHHHHHHHHHHHcccccccC----HHHHHHHHHHhh---cc--------CCHHHHHHHHH
Confidence 0 1233333322 367899999999999999987654 345555552211 11 12368999999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHH
Q 001398 511 SFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGE 553 (1085)
Q Consensus 511 ~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~E 553 (1085)
++.|+....|....+.+..+.+... ..+.+..-.+|...|-
T Consensus 487 a~~Kl~~~~p~~~~~~i~~ll~~~~--~d~~d~evrdRA~~y~ 527 (591)
T 2vgl_B 487 AIVKLFLKKPSETQELVQQVLSLAT--QDSDNPDLRDRGYIYW 527 (591)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHH--TTCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhh--hcCCChHHHHHHHHHH
Confidence 9999999998766555554432211 1112344455555553
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.25 E-value=2.4 Score=50.33 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=41.4
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccC
Q 001398 447 KWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDK 521 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~ 521 (1085)
+..++.++...+.+++.+...+... .++..++.-+...+. + ...+||..++.+|-++++....
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~-------d----~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQD-ITTKHMLPTVLRMAG-------D----PVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHGGG-------C----SCHHHHHHHHHHHHHHGGGSCH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhhCC-------C----CCchHHHHHHHHHHHHHHHhch
Confidence 4567788888888888877654432 133444444433332 2 2347999999999999987644
No 21
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.01 E-value=46 Score=42.12 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCChhhhhHHHHHHHHHcCCCCCCCCChHHHHHHHHHHH
Q 001398 110 HAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVF 184 (1085)
Q Consensus 110 ~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~~~~r~~A~ecL~~i~sRk~~~~~~~~lf~~~l~~i~ 184 (1085)
+..+...++.+++.|.+|+....-.-..+++.+...+.++.+|..||.+|..++.. ++. .-.+.++.++..++
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~-~~~-~l~p~~~~il~~l~ 574 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRE-CKY-DLPPYAANIVAVSQ 574 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHH-TGG-GCTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHH-HHHhhHHHHHHHHH
Confidence 34688999999999999976432112347777765556799999999999998853 211 22244555555544
No 22
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.90 E-value=53 Score=39.41 Aligned_cols=166 Identities=8% Similarity=0.087 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 001398 351 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQL 430 (1085)
Q Consensus 351 ~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~ 430 (1085)
.+||+.....+..++...|... .|....+-..+.... .+..-+....+.+-+ .. ++ +. +.
T Consensus 399 ~e~r~~~v~~I~~la~k~~~~~-~~~v~~ll~lL~~~~-------~~v~~~~~~~l~~ii-~~-------~p--~l--~~ 458 (618)
T 1w63_A 399 PEFKADCASGIFLAAEKYAPSK-RWHIDTIMRVLTTAG-------SYVRDDAVPNLIQLI-TN-------SV--EM--HA 458 (618)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCH-HHHHHHHHHHHHHTG-------GGSCSSHHHHHHHHH-HH-------SC--ST--HH
T ss_pred HHHHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHhcc-------chhHHHHHHHHHHHH-hc-------Ch--hH--HH
Confidence 4688888888888887765443 444444545554321 011111122222211 21 11 11 12
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhc-----------CCCchHHHHHHHHHhhccCCCCCCCCCch
Q 001398 431 SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKY-----------YPDAVGGVISKLFELLTSLPFVFKDPSTN 499 (1085)
Q Consensus 431 ~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~-----------~~~~l~~VL~klfe~l~~~p~~~~~~~~~ 499 (1085)
..+..++..+..-...++..+ ..+|+++.|+..+.. .|..+..+|..+++...
T Consensus 459 ---~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------------ 522 (618)
T 1w63_A 459 ---YTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNM------------ 522 (618)
T ss_dssp ---HHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTT------------
T ss_pred ---HHHHHHHHHHhcccccHHHHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccC------------
Confidence 234455555554223455554 689999999987654 23334455555422110
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 001398 500 SARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFL 556 (1085)
Q Consensus 500 ~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~ 556 (1085)
....+|..+-+++.|+....|.. .+.+..+ +.....+.++.-.+|...|-.++
T Consensus 523 ~~~~vr~~~lta~~Kl~~~~~~~-~~~l~~~---L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 523 STSVTRGYALTAIMKLSTRFTCT-VNRIKKV---VSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSSC-HHHHHHH---HHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcch-HHHHHHH---HHHhcCCCCHHHHHHHHHHHHHH
Confidence 11268999999999999998753 3333333 33333334556667776665553
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=87.77 E-value=41 Score=37.95 Aligned_cols=77 Identities=14% Similarity=0.012 Sum_probs=52.7
Q ss_pred CCCChhHHHHHHHHHHhhhhhhh--cCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCcc-
Q 001398 447 KWTEPPLVVALGHYLDALGPFLK--YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI- 523 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~--~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l- 523 (1085)
+..++.++...+..++.+..-.. .-.+.++.++..++..+. ++ ...||..||.++-+++...+..+
T Consensus 376 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~-------d~----~~~Vr~~a~~~l~~~~~~~~~~~~ 444 (462)
T 1ibr_B 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-------DP----SVVVRDTAAWTVGRICELLPEAAI 444 (462)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG-------CS----CHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred cCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-------CC----CHHHHHHHHHHHHHHHHhcccccc
Confidence 45688888888888888775221 112344566666666553 21 24799999999999999987765
Q ss_pred -chHHHHHHHHH
Q 001398 524 -LPHMKDIADTM 534 (1085)
Q Consensus 524 -~P~~~~i~~~i 534 (1085)
.||++.++..+
T Consensus 445 ~~~~l~~ll~~L 456 (462)
T 1ibr_B 445 NDVYLAPLLQCL 456 (462)
T ss_dssp STTTHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 47888875543
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.15 E-value=11 Score=39.88 Aligned_cols=123 Identities=15% Similarity=0.037 Sum_probs=79.2
Q ss_pred CCCChhHHHHHHHHHHhhhhhhh--cCC-CchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccC-c
Q 001398 447 KWTEPPLVVALGHYLDALGPFLK--YYP-DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDK-S 522 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~--~~~-~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~-~ 522 (1085)
+..++.++...+.+++++..-+. ... .+...++..+++.+.. + ...||.++..++..++...+. .
T Consensus 71 ~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~d-----k------k~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 71 KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKE-----K------KPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGC-----C------CHHHHHHHHHHHHHHHHHSCTTC
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcC-----C------CHHHHHHHHHHHHHHHHHccccc
Confidence 46678888899999999998775 344 5778888888887641 1 236899999999999998643 2
Q ss_pred cchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCH--HHHHHHH-HHHhHHHHhhh
Q 001398 523 ILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGI--QQQQEVL-AWLLEPLSQQW 582 (1085)
Q Consensus 523 l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~--~~q~~~l-~~ll~P~~~~W 582 (1085)
..++++.+.+.+-..+.+. .+..|.....++..+....+. ..=..++ ..+++.+....
T Consensus 140 ~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp TTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh
Confidence 2244888776666555543 345666556666555542221 2212355 55665555443
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=86.78 E-value=13 Score=38.67 Aligned_cols=116 Identities=10% Similarity=0.060 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHhhhhhhhcC-CCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchH
Q 001398 448 WTEPPLVVALGHYLDALGPFLKYY-PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH 526 (1085)
Q Consensus 448 ~~dp~l~s~~l~~l~~l~~fl~~~-~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~ 526 (1085)
.+++.++...+.+++.+..-+... ..++..++..+++.+. + ....||..|+.++..++...+
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~-------d----~~~~vr~~a~~aL~~~~~~~~------ 130 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFK-------E----KKPNVVTALREAIDAIYASTS------ 130 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG-------C----CCHHHHHHHHHHHHHHHTTSC------
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-------C----CCHHHHHHHHHHHHHHHHcCC------
Confidence 578888888888888888654321 2345566666666553 1 123699999999999998643
Q ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHhHHHHhhh
Q 001398 527 MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQ-QQQEVLAWLLEPLSQQW 582 (1085)
Q Consensus 527 ~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~-~q~~~l~~ll~P~~~~W 582 (1085)
++.+...+...+... ...-|....+++..+....+++ .-...+..+++.+....
T Consensus 131 ~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l 185 (242)
T 2qk2_A 131 LEAQQESIVESLSNK--NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185 (242)
T ss_dssp HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh
Confidence 344444444333332 3556666777777765533333 22455666777666555
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=80.84 E-value=78 Score=35.48 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=89.0
Q ss_pred cchhhH---HHHHHHhhc-CChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001398 20 NLWQEL---FPSLVSLSS-KGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAA 95 (1085)
Q Consensus 20 ~~Wp~f---l~eL~~l~~-~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~~~~~~Le~~~~~~ 95 (1085)
..|++. ++.|++..+ .++..++.++..|+.+...- . +.... . .+.. +.+++.+...+....
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~---~-~~~~~---~---~~~~--~~~i~~L~~~L~~~~--- 77 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKE---P-NPPID---E---VIST--PGVVARFVEFLKRKE--- 77 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSS---S-SCCHH---H---HHTS--TTHHHHHHHHHTCTT---
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---C-CCcHH---H---HHHc--CCcHHHHHHHHCCCC---
Confidence 366666 677776554 45677888999998864210 1 11110 0 0111 133444433332110
Q ss_pred HHHhhhhchHHHhhHHHHHHHHHHHHHhccccCC--cchhcccChHHHHHhhcC--ChhhhhHHHHHHHHHcCCCCCCCC
Q 001398 96 LSEVGRQQLDVAKQHAATVTATLNAINAYAEWAP--LPDLAKYGIIHGCGFLLS--SPDFRLHACEFFKLVSPRKGPADA 171 (1085)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip--~~~i~~~~ll~~L~~ll~--~~~~r~~A~ecL~~i~sRk~~~~~ 171 (1085)
...+...++.++.....--+ ...+.+.+.++.+..++. ++.+|..|+.||..+.... ++.
T Consensus 78 --------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~--~~~ 141 (450)
T 2jdq_A 78 --------------NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS--TMC 141 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHH
T ss_pred --------------CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC--HHH
Confidence 01233444444444433211 123455788888865544 4899999999999998643 111
Q ss_pred ChHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhhc
Q 001398 172 SASEFE-SAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQ 250 (1085)
Q Consensus 172 ~~~lf~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~ 250 (1085)
+...++ .++..+ + .++. ++.+....+..+..+..+....-... ........++.++.++.
T Consensus 142 ~~~~~~~~~i~~L----~----~~l~---------~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 142 RDYVLDCNILPPL----L----QLFS---------KQNRLTMTRNAVWALSNLCRGKSPPP--EFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp HHHHHHTTCHHHH----H----HHTT---------SCCCHHHHHHHHHHHHHHHCCSSSCC--CGGGTGGGHHHHHHHTT
T ss_pred HHHHHHCCCHHHH----H----HHhc---------CCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHc
Confidence 111111 111111 1 1111 11223456666666666653220100 01123456777888888
Q ss_pred cchHHHHHHH
Q 001398 251 HFKIALHFQS 260 (1085)
Q Consensus 251 hpsl~ls~~~ 260 (1085)
+++..+...+
T Consensus 203 ~~~~~v~~~a 212 (450)
T 2jdq_A 203 VSDTDVLADA 212 (450)
T ss_dssp CCCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 8776655544
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=79.33 E-value=86 Score=35.10 Aligned_cols=54 Identities=6% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcc---ccCCcchhccc-ChHHHHHhhc--C-ChhhhhHHHHHHHHHcCCC
Q 001398 113 TVTATLNAINAYA---EWAPLPDLAKY-GIIHGCGFLL--S-SPDFRLHACEFFKLVSPRK 166 (1085)
Q Consensus 113 ~v~~aL~tl~~yl---~Wip~~~i~~~-~ll~~L~~ll--~-~~~~r~~A~ecL~~i~sRk 166 (1085)
+...|+.++...+ ...+...+.+. ++++.|..++ + ++.+|..|+.||..+....
T Consensus 36 ~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 36 QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp HHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4556666665554 23444555666 8898885333 3 5799999999999998743
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=78.78 E-value=42 Score=35.16 Aligned_cols=113 Identities=12% Similarity=0.199 Sum_probs=75.1
Q ss_pred HHHHHHhc-cCCCChhHHHHHHHHHHhhhhhhhcCC--CchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHH
Q 001398 438 GLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKYYP--DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIR 514 (1085)
Q Consensus 438 ~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~fl~~~~--~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~r 514 (1085)
.++..++. ++.+.+.++......+..+.....-.. ..+..+++.+++.|.. + ...+|..++..+.+
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-----k------~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-----K------TPQIRMECTQLFNA 172 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-----S------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-----C------ChHHHHHHHHHHHH
Confidence 34444443 366667788777777776665432111 2367899999888751 1 22689999999999
Q ss_pred HHHhcc---CccchHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCC
Q 001398 515 IAKTSD---KSILPHM-KDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAG 563 (1085)
Q Consensus 515 i~~~~~---~~l~P~~-~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~ 563 (1085)
++...+ ..+.|++ +.++..+..+.... ...=|..=+|+++.+....+
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhC
Confidence 999987 4688899 88887777766543 34455566777777765333
No 29
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=76.49 E-value=66 Score=32.22 Aligned_cols=174 Identities=9% Similarity=0.135 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHH
Q 001398 350 FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQ 429 (1085)
Q Consensus 350 f~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~ 429 (1085)
.|..++....++-.+++-.|+.....+...+.-+-.+. ...--......+.-+.. ..
T Consensus 45 lwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE--------aIpltqeIa~a~G~la~---------------i~ 101 (253)
T 2db0_A 45 LWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE--------AIPLTQEIAKAFGQMAK---------------EK 101 (253)
T ss_dssp CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--------SHHHHHHHHHHHHHHHH---------------HC
T ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc--------cCchHHHHHHHHhHHHH---------------hC
Confidence 38999999999999999999887766544443322221 11000111111111111 01
Q ss_pred HHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCC--------------CC-
Q 001398 430 LSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFV--------------FK- 494 (1085)
Q Consensus 430 ~~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~--------------~~- 494 (1085)
+.++..+-.++ .-++...||.++-++.|.++. ..+.+|..++.|...++..+++ |.+ ..
T Consensus 102 Pe~v~~vVp~l--fanyrigd~kikIn~~yaLee---IaranP~l~~~v~rdi~smlts-kd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 102 PELVKSMIPVL--FANYRIGDEKTKINVSYALEE---IAKANPMLMASIVRDFMSMLSS-KNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp HHHHHHHHHHH--HHHSCCCSHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHTCCTTT
T ss_pred HHHHHhhHHHH--HHHHhcCCccceecHHHHHHH---HHHhChHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhccC
Confidence 22222222222 234667788877776665554 4456777777777776665553 110 00
Q ss_pred ----CC--------CchHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHh
Q 001398 495 ----DP--------STNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMA 559 (1085)
Q Consensus 495 ----~~--------~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~is 559 (1085)
.| ..+..+-||..|..++..+|...|+ +-|.+....+.+ .+-|.--+-...|++.-+.
T Consensus 176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~------~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEEL------NDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHC------CCSCHHHHHHHHHHHHHHH
T ss_pred ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHh------cCcHHHHHHHHHHHHHHHH
Confidence 00 1123456888888888888888776 555544433222 2334444445666665543
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=74.13 E-value=43 Score=40.26 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchH--HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHH
Q 001398 433 SRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVG--GVISKLFELLTSLPFVFKDPSTNSARHARLQICT 510 (1085)
Q Consensus 433 ~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~--~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~ 510 (1085)
.+.+..-+..++..+..+|-+++..+.++.. +++.+|+.++ ..++++.+.|. . +++ .|+..|..
T Consensus 144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~k---l~~~~p~~~~~~~~~~~l~~lL~---d--~d~------~V~~~a~~ 209 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLR---LYRTSPDLVPMGDWTSRVVHLLN---D--QHL------GVVTAATS 209 (621)
T ss_dssp HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHH---HHHHCGGGCCCCSCHHHHHHHTT---C--SCH------HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---HHHhChhhcCchhHHHHHHHHhC---C--CCc------cHHHHHHH
Confidence 3344445555554467899999887555444 4456677776 67788877664 1 221 58899999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHcccc-----------chHHHHHHHHHHHHHhc
Q 001398 511 SFIRIAKTSDKSILPHMKDIADTMAYLQREGRL-----------LRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 511 ~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L-----------~~~e~~~L~Eal~~iss 560 (1085)
+|..++...|..+.+++..+.+.+.++...+.. ++--++.+.+.+..+..
T Consensus 210 ~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 210 LITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 999999999988888888888888877765444 35566666666665543
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=72.88 E-value=1.4e+02 Score=34.46 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhccccC---CcchhcccChHHHHHhhcC---ChhhhhHHHHHHHHHcCCC
Q 001398 112 ATVTATLNAINAYAEWA---PLPDLAKYGIIHGCGFLLS---SPDFRLHACEFFKLVSPRK 166 (1085)
Q Consensus 112 ~~v~~aL~tl~~yl~Wi---p~~~i~~~~ll~~L~~ll~---~~~~r~~A~ecL~~i~sRk 166 (1085)
.+...|+.++...+.-- +...+.+.++++.|..++. ++.+|..|+.||..+..-.
T Consensus 102 ~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 35566777777776542 3345677889998865443 4789999999999998643
No 32
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=71.06 E-value=45 Score=42.36 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhh------------cCCCchHHHHHHHHHhhccCCCCCCCCCch
Q 001398 432 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLK------------YYPDAVGGVISKLFELLTSLPFVFKDPSTN 499 (1085)
Q Consensus 432 l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~------------~~~~~l~~VL~klfe~l~~~p~~~~~~~~~ 499 (1085)
+..++..+++.+ ...++.++...++.+..|..... .-.++++.+++++|..+... + . .|
T Consensus 494 l~~~l~~l~~~L---~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~-~-~~--- 564 (960)
T 1wa5_C 494 LIELMPILATFL---QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH-G-S-SP--- 564 (960)
T ss_dssp HHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-C-C-CH---
T ss_pred HHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc-c-C-CC---
Confidence 344454455443 34467777777666666554311 12357788999998877631 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHcc---ccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhH
Q 001398 500 SARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREG---RLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLE 576 (1085)
Q Consensus 500 ~~~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~---~L~~~e~~~L~Eal~~iss~~~~~~q~~~l~~ll~ 576 (1085)
.-......+..++-+++...++.+.||++.+...+...+..- .=.+.-+..+.|+++.++...+++....+.+.+++
T Consensus 565 ~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p 644 (960)
T 1wa5_C 565 EKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMP 644 (960)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 000122478889999999999999999999987777666531 11233345689999999876677777777788887
Q ss_pred HHHhh
Q 001398 577 PLSQQ 581 (1085)
Q Consensus 577 P~~~~ 581 (1085)
++...
T Consensus 645 ~~~~i 649 (960)
T 1wa5_C 645 TFLTV 649 (960)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 33
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=65.51 E-value=26 Score=36.22 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=47.1
Q ss_pred CCCChhHHHHHHHHHHhhhhhhh---cCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCc-
Q 001398 447 KWTEPPLVVALGHYLDALGPFLK---YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKS- 522 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~---~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~- 522 (1085)
+.++|.++...+..+..+..-.. ....+++.++..+++.+. | ....||..|..++..+++..+..
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~-------D----~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN-------E----PDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT-------S----SCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc-------C----CChHHHHHHHHHHHHHHHHcCHHH
Confidence 56788888877666666322111 112345666666666653 1 23479999999999999997765
Q ss_pred cchHHHHH
Q 001398 523 ILPHMKDI 530 (1085)
Q Consensus 523 l~P~~~~i 530 (1085)
+.|+++.+
T Consensus 212 ~~~~l~~L 219 (242)
T 2qk2_A 212 VTPLLADV 219 (242)
T ss_dssp HGGGGTTS
T ss_pred HHHHHHhc
Confidence 66766554
No 34
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=64.68 E-value=1.8e+02 Score=32.49 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHH
Q 001398 431 SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICT 510 (1085)
Q Consensus 431 ~l~~~l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~ 510 (1085)
.+...-.+++..|+..=..+...-..++-+++.++...+.+|.++..|++.+...-...|.. +..-.++.||+..=.
T Consensus 218 ~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t---~sk~qvkSv~KtLR~ 294 (386)
T 3o2t_A 218 VLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPT---LAKSQVSSVRKNLKL 294 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC-------CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHHHH
Confidence 34445556666666532221111123445789999999999999999999875432223321 133468889999999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHH
Q 001398 511 SFIRIAKTSDKSILPHMKDIADTMAYLQ 538 (1085)
Q Consensus 511 ~f~ri~~~~~~~l~P~~~~i~~~i~~l~ 538 (1085)
.|+.+-+. |.. .||-..|.+.+.++-
T Consensus 295 ~Ll~lLK~-p~s-~~~~~~I~~~L~~Lg 320 (386)
T 3o2t_A 295 HLLSVLKH-PAS-LEFQAQITTLLVDLG 320 (386)
T ss_dssp HHHHHHTS-GGG-GGGHHHHHHHHHHTT
T ss_pred HHHHHHcC-CCc-hhhHHHHHHHHHHHc
Confidence 99998874 433 388777766666433
No 35
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=58.32 E-value=3.8e+02 Score=34.08 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhccccCCcchhcccChHHHHHhhcC--ChhhhhHHHHHHHHHcCC
Q 001398 112 ATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLS--SPDFRLHACEFFKLVSPR 165 (1085)
Q Consensus 112 ~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~--~~~~r~~A~ecL~~i~sR 165 (1085)
.+...+..+++.|.+|.....-.=..+++.+...+. ++.+|..||.+|.-++..
T Consensus 515 ~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 344468899999999975432111124454432333 489999999999988864
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=56.45 E-value=2e+02 Score=33.15 Aligned_cols=128 Identities=10% Similarity=-0.000 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccccCC--cchhcccChHHHHHhh--cCChhhhhHHHHHHHHHcCCCCCCCCChHHHH-HHHHHHHHHH
Q 001398 113 TVTATLNAINAYAEWAP--LPDLAKYGIIHGCGFL--LSSPDFRLHACEFFKLVSPRKGPADASASEFE-SAMHDVFQIL 187 (1085)
Q Consensus 113 ~v~~aL~tl~~yl~Wip--~~~i~~~~ll~~L~~l--l~~~~~r~~A~ecL~~i~sRk~~~~~~~~lf~-~~l~~i~~~~ 187 (1085)
+...|+.+|.....--+ ...+.+.+.++.|..+ -+++.+|..|+.+|..+.... ++.+...+. .++..+
T Consensus 147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L---- 220 (530)
T 1wa5_B 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPI---- 220 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHH----
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--ccchHHHHHcCcHHHH----
Confidence 44455555555544221 1234567788877433 356899999999999998643 101111111 111111
Q ss_pred HHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhhccchHHHHHHHHH
Q 001398 188 MKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLL 262 (1085)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~ 262 (1085)
+ .++. + .+....+..+..|..|....-... ........++.++.++.|+...+...++.
T Consensus 221 ~----~ll~----~------~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~~~~l~~L~~lL~~~d~~v~~~a~~ 279 (530)
T 1wa5_B 221 L----GLFN----S------NKPSLIRTATWTLSNLCRGKKPQP--DWSVVSQALPTLAKLIYSMDTETLVDACW 279 (530)
T ss_dssp H----HGGG----S------CCHHHHHHHHHHHHHHHCCSSSCC--CHHHHGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred H----HHhc----c------CCHHHHHHHHHHHHHHhCCCCCCC--cHHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1121 0 123455666666666643221100 01123456778888888887666655544
No 37
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=54.06 E-value=64 Score=41.11 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHh
Q 001398 502 RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQ 580 (1085)
Q Consensus 502 ~~vR~~A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss-~~~~~~q~~~l~~ll~P~~~ 580 (1085)
..+|.++|..|.|+.......+.|++..+++.+- . .++..|..-+...++-++. +++. -..+|..++.|+.+
T Consensus 715 ~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll---~--~~~~~e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 715 EDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL---N--SIDMNELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLM 787 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH---H--HCCTTTHHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH---h--cCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3799999999999999999999999999866554 2 3556777777778877776 5443 34566777777654
No 38
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=52.45 E-value=3.1e+02 Score=31.36 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhccccC---CcchhcccChHHHHHhhcC--C-hhhhhHHHHHHHHHcCC
Q 001398 113 TVTATLNAINAYAEWA---PLPDLAKYGIIHGCGFLLS--S-PDFRLHACEFFKLVSPR 165 (1085)
Q Consensus 113 ~v~~aL~tl~~yl~Wi---p~~~i~~~~ll~~L~~ll~--~-~~~r~~A~ecL~~i~sR 165 (1085)
+...|+.++...+.-- +...+.+.++++.|..++. + +.+|..|+.||..+...
T Consensus 90 ~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 4455566665554432 3456677889998864443 3 78999999999999874
No 39
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=47.50 E-value=1.5e+02 Score=35.15 Aligned_cols=127 Identities=9% Similarity=0.096 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhccccCCcchhcccChHHHHHhhcCC--hhhhhHHHHHHHHHcCCCCCCCC-ChHHHHHHHHHHHHHHH
Q 001398 112 ATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSS--PDFRLHACEFFKLVSPRKGPADA-SASEFESAMHDVFQILM 188 (1085)
Q Consensus 112 ~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll~~--~~~r~~A~ecL~~i~sRk~~~~~-~~~lf~~~l~~i~~~~~ 188 (1085)
.+...|..++..... ..+..+...++++.+..++.+ +.+|..|+.+|.+|.... ++. ...+....+..++..
T Consensus 136 ~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~--~~~~~~~l~~~~~~~Ll~~-- 210 (591)
T 2vgl_B 136 YVRKTAAVCVAKLHD-INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH--PNSNLLDLNPQNINKLLTA-- 210 (591)
T ss_dssp HHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC--CSCCSCCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHh-hChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC--CCccchhccHHHHHHHHHc--
Confidence 455666666665555 223344444577777655554 688999999999988765 211 111112223333221
Q ss_pred HHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 001398 189 KVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLA 266 (1085)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~ 266 (1085)
... . + +|... .++-.++ .++ ..++.....+++.++..++|.+-.|...+...+..
T Consensus 211 --l~~--------~---~----~~~q~--~il~~l~-~l~---~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 211 --LNE--------C---T----EWGQI--FILDCLS-NYN---PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp --HHH--------C---C----HHHHH--HHHHHHH-TSC---CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred --CCC--------C---C----chHHH--HHHHHHH-HhC---CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 111 0 1 12221 2222222 111 11223456788889999999888877777666554
No 40
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=41.98 E-value=6.4e+02 Score=31.98 Aligned_cols=102 Identities=9% Similarity=0.052 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHH
Q 001398 37 PIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTA 116 (1085)
Q Consensus 37 ~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~ 116 (1085)
-..+|-.+..++.++|-+.. ......+|++++.+..+.++.- + . .....+...
T Consensus 467 W~~~EA~~~a~gaIa~~~~~--------------~~e~~~l~~vi~~Ll~l~~~~~---------~-~---d~k~~v~~t 519 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSE--------------DTEKRFVVTVIKDLLDLCVKKR---------G-K---DNKAVVASD 519 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCH--------------HHHHHHHHHHHHHHHHHHHHCC---------S-H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCc--------------hhHHHHHHHHHHHHHHhhhccc---------c-C---cchHHHHHH
Confidence 45667777777777652221 1133346777777666554210 0 0 012345557
Q ss_pred HHHHHHhccccCCcchhcccChHHHHHhhc--CChhhhhHHHHHHHHHcCC
Q 001398 117 TLNAINAYAEWAPLPDLAKYGIIHGCGFLL--SSPDFRLHACEFFKLVSPR 165 (1085)
Q Consensus 117 aL~tl~~yl~Wip~~~i~~~~ll~~L~~ll--~~~~~r~~A~ecL~~i~sR 165 (1085)
+.-+++.|.+|+..+.=.=..+++.|...+ +.+.++..||.+|.-|+..
T Consensus 520 ~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 779999999998432111112344443333 3478999999999988864
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=41.41 E-value=5.1e+02 Score=30.68 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHhhhhhhhcCCCchH-HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHH
Q 001398 436 FEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVG-GVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIR 514 (1085)
Q Consensus 436 l~~Ll~~ll~~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~-~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~r 514 (1085)
+..++..+..-+..+ .+....+|++|-|+..+...+...+ .+++.+.+.+. . ....+|.++-+++.|
T Consensus 480 ~~~l~~~l~~~~~~~-~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~---~--------~~~~v~~~~Lta~~K 547 (621)
T 2vgl_A 480 AKTVFEALQAPACHE-NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH---L--------CSVPTRALLLSTYIK 547 (621)
T ss_dssp HHHHHHHHTSSSCCH-HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT---T--------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccchH-HHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc---c--------CCHHHHHHHHHHHHH
Confidence 344454444322222 3445666999999998887654433 55665544333 1 112689999999999
Q ss_pred HHHhccCccchHHHHHHHHHHHHHH--ccccchHHHHHHHHHHH
Q 001398 515 IAKTSDKSILPHMKDIADTMAYLQR--EGRLLRGEHNLLGEAFL 556 (1085)
Q Consensus 515 i~~~~~~~l~P~~~~i~~~i~~l~~--~~~L~~~e~~~L~Eal~ 556 (1085)
+....|. +.+.+..+ ++.... +.+..-++|..+|-.++
T Consensus 548 l~~~~p~-~~~~i~~~---l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 548 FVNLFPE-VKATIQDV---LRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHCGG-GHHHHHHH---HSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHChH-HHHHHHHH---HHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 9988764 22332222 222222 33455566666665554
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=33.85 E-value=1.6e+02 Score=35.24 Aligned_cols=89 Identities=9% Similarity=0.109 Sum_probs=59.2
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchH
Q 001398 447 KWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH 526 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~ 526 (1085)
+..+|.++...+++++.+. .++....++..+...+.. . ...||+.|+.++.++++.+|+.+..+
T Consensus 117 ~~~n~~vr~lAL~~L~~i~-----~~~~~~~l~~~l~~~L~~-----~------~~~VRk~A~~al~~l~~~~p~~v~~~ 180 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMG-----SSEMCRDLAGEVEKLLKT-----S------NSYLRKKAALCAVHVIRKVPELMEMF 180 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHS-----C------CHHHHHHHHHHHHHHHHHCGGGGGGG
T ss_pred CCCCHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHcC-----C------CHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 5788999988888888776 234555556666555541 1 23799999999999999999876544
Q ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc
Q 001398 527 MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 527 ~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss 560 (1085)
++.+ . ..|.+......+.|+.++..
T Consensus 181 ~~~l----~-----~lL~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 181 LPAT----K-----NLLNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp GGGT----T-----TSTTCCCHHHHHHHHHHHHH
T ss_pred HHHH----H-----HHhCCCCHhHHHHHHHHHHH
Confidence 4443 2 13444455566666666654
No 43
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=28.00 E-value=1.5e+02 Score=31.32 Aligned_cols=66 Identities=11% Similarity=0.047 Sum_probs=40.5
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhcC---------CCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001398 447 KWTEPPLVVALGHYLDALGPFLKYY---------PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAK 517 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~~~---------~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~ 517 (1085)
..+++.+....+.++..+...+... ..++|.+++|+ ++.+ ..+|..+-..+..++.
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKl--------Gd~k-------~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKT--------GEAK-------DNMRTSVRDIVNVLSD 161 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGG--------GCSS-------HHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--------CCCh-------HHHHHHHHHHHHHHHH
Confidence 3557777777777777766555332 12344455544 3223 2588888888888888
Q ss_pred hccCc-cchHH
Q 001398 518 TSDKS-ILPHM 527 (1085)
Q Consensus 518 ~~~~~-l~P~~ 527 (1085)
.+|.. +.+++
T Consensus 162 v~~~~~v~~~l 172 (266)
T 2of3_A 162 VVGPLKMTPML 172 (266)
T ss_dssp HHCHHHHHHHH
T ss_pred HCCHHHHHHHH
Confidence 76544 55554
No 44
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=22.99 E-value=6.6e+02 Score=26.16 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhccCCCChhHH-HHHHHHHHhhhhhhhcCCCchHHHHHHH
Q 001398 430 LSLSRIFEGLLRQLLSLKWTEPPLV-VALGHYLDALGPFLKYYPDAVGGVISKL 482 (1085)
Q Consensus 430 ~~l~~~l~~Ll~~ll~~~~~dp~l~-s~~l~~l~~l~~fl~~~~~~l~~VL~kl 482 (1085)
+.+...-.+++..|+.+- .+|.+- ..++-+++.++...|.+|.++.+|++.+
T Consensus 204 ~~Le~Ea~~lL~~LL~~~-~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~a~ 256 (257)
T 3gs3_A 204 EKLQEEGNNILDILLQFH-GTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEAF 256 (257)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCccchHHHHHHHHHHHHHHHhCcHHHHHHHHhc
Confidence 334445556666666642 233222 2356688999999999999999998754
No 45
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=22.48 E-value=1.2e+02 Score=33.56 Aligned_cols=89 Identities=8% Similarity=-0.077 Sum_probs=59.5
Q ss_pred CCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccchH
Q 001398 447 KWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH 526 (1085)
Q Consensus 447 ~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~P~ 526 (1085)
+.++|.++...++++..+- .|+.+..+...+-.++. . ++ -.||+.|+-...|+....|+.+..+
T Consensus 114 ~~~N~~iR~lALRtL~~I~-----~~~m~~~l~~~lk~~L~---d--~~------pyVRk~A~l~~~kL~~~~pe~v~~~ 177 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQIT-----DSTMLQAIERYMKQAIV---D--KV------PSVSSSALVSSLHLLKCSFDVVKRW 177 (355)
T ss_dssp HSSCHHHHHHHHHHHHHHC-----CTTTHHHHHHHHHHHHT---C--SS------HHHHHHHHHHHHHHTTTCHHHHHTT
T ss_pred CCCcHhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHcC---C--CC------HHHHHHHHHHHHHHhccCHHHHHHH
Confidence 5678889988877776653 34555555555544554 1 22 2699999999999999999887666
Q ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHhc
Q 001398 527 MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 560 (1085)
Q Consensus 527 ~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss 560 (1085)
++.+ +++.. +......|.|++++..
T Consensus 178 ~~~l----~~ll~-----d~n~~V~~~Al~lL~e 202 (355)
T 3tjz_B 178 VNEA----QEAAS-----SDNIMVQYHALGLLYH 202 (355)
T ss_dssp HHHH----HHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHH----HHHhc-----CCCccHHHHHHHHHHH
Confidence 5554 33333 3344556788887765
No 46
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=20.92 E-value=2.6e+02 Score=29.46 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhccccCCcchhcccChH---HHHHhhcCC--hhhhhHHHHHHHHHcCCC
Q 001398 112 ATVTATLNAINAYAEWAPLPDLAKYGII---HGCGFLLSS--PDFRLHACEFFKLVSPRK 166 (1085)
Q Consensus 112 ~~v~~aL~tl~~yl~Wip~~~i~~~~ll---~~L~~ll~~--~~~r~~A~ecL~~i~sRk 166 (1085)
+....+|.++...++=--+. ....+ +.++.+++| ..+|.+|..|+.+++..-
T Consensus 182 R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 182 RQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 44555555554444322222 12245 777766665 779999999999988543
Done!