BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001399
         (1085 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic
          Subunit (Irx3) Of Cellulose Synthase
          Length = 93

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 65/72 (90%)

Query: 26 SGPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCK 85
          SGPKPLKNL+GQ C+ICGD +GLT  GD+FVACNEC FP CRPCYEYER++GTQ+CPQCK
Sbjct: 6  SGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCK 65

Query: 86 TRYKRHKGSPRV 97
          TRYKR +GSPRV
Sbjct: 66 TRYKRLRGSPRV 77


>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 6/89 (6%)

Query: 775 GWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIL 834
           G+   ++TED  T  ++H+RGW S+Y    R    G  P   +  + Q  RWA G +++L
Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQML 391

Query: 835 LSRHCPIWYGYNGRLKLLERLAYINTIVY 863
           L ++     G    L + +RL Y+N++ +
Sbjct: 392 LLKNPLFRRG----LGIAQRLCYLNSMSF 416


>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
 pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
          Length = 261

 Score = 30.8 bits (68), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 376 ANTVLSILAVDYPVDKVSCYV--SDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433
           A  +  +L + Y  D++S  +  S     + T E L + A+   +W    KK  +E   P
Sbjct: 135 AGGIYQVLEIPYEGDEISMMLALSRQEVPLATLEPLLK-AQLIEEWANSVKKQKVEVYLP 193

Query: 434 EFYFAQKIDYLKDKIQPSFVKE 455
            F   Q+ID LKD ++   V E
Sbjct: 194 RFTVEQEID-LKDILKALGVTE 214


>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
 pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
          Length = 397

 Score = 30.0 bits (66), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 376 ANTVLSILAVDYPVDKVSCYV--SDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433
           A  +  +L + Y  D++S  +  S     + T E L + A+   +W    KK  +E   P
Sbjct: 232 AGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVK-AQLVEEWANSVKKQKVEVYLP 290

Query: 434 EFYFAQKIDYLKDKIQPSFVKE 455
            F   Q+ID LKD ++   + E
Sbjct: 291 RFTVEQEID-LKDVLKALGITE 311


>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
 pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
 pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
 pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
 pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
          Length = 407

 Score = 30.0 bits (66), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 376 ANTVLSILAVDYPVDKVSCYV--SDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433
           A  +  +L + Y  D++S  +  S     + T E L + A+   +W    KK  +E   P
Sbjct: 232 AGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVK-AQLVEEWANSVKKQKVEVYLP 290

Query: 434 EFYFAQKIDYLKDKIQPSFVKE 455
            F   Q+ID LKD ++   + E
Sbjct: 291 RFTVEQEID-LKDVLKALGITE 311


>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
 pdb|3F02|B Chain B, Cleaved Human Neuroserpin
          Length = 359

 Score = 29.6 bits (65), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 376 ANTVLSILAVDYPVDKVSCYV--SDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433
           A  +  +L + Y  D++S  +  S     + T E L + A+   +W    KK  +E   P
Sbjct: 232 AGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVK-AQLVEEWANSVKKQKVEVYLP 290

Query: 434 EFYFAQKIDYLKDKIQPSFVKE 455
            F   Q+ID LKD ++   + E
Sbjct: 291 RFTVEQEID-LKDVLKALGITE 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,155,988
Number of Sequences: 62578
Number of extensions: 1481732
Number of successful extensions: 2702
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2699
Number of HSP's gapped (non-prelim): 10
length of query: 1085
length of database: 14,973,337
effective HSP length: 109
effective length of query: 976
effective length of database: 8,152,335
effective search space: 7956678960
effective search space used: 7956678960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)