Query 001399
Match_columns 1085
No_of_seqs 411 out of 1905
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 23:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02400 cellulose synthase 100.0 0E+00 0E+00 2913.5 85.5 1083 1-1085 1-1085(1085)
2 PLN02436 cellulose synthase A 100.0 2E-319 5E-324 2824.1 84.9 1072 1-1085 1-1093(1094)
3 PLN02638 cellulose synthase A 100.0 3E-311 7E-316 2761.8 84.1 1054 22-1085 3-1079(1079)
4 PLN02189 cellulose synthase 100.0 1E-301 3E-306 2672.3 84.4 1026 1-1085 1-1040(1040)
5 PLN02915 cellulose synthase A 100.0 7E-297 1E-301 2631.7 79.8 1001 31-1085 10-1044(1044)
6 PLN02195 cellulose synthase A 100.0 5E-282 1E-286 2491.9 79.9 971 33-1085 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 1E-249 2E-254 2223.1 73.2 953 4-1072 89-1126(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 4E-217 8E-222 1895.5 49.3 719 358-1079 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 7E-199 2E-203 1743.6 60.3 726 260-1063 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-190 3E-195 1681.6 63.8 707 259-1061 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 4.4E-67 9.4E-72 640.3 48.3 491 279-1037 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 4.6E-67 1E-71 640.8 44.9 473 280-1036 188-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 7.6E-45 1.6E-49 320.1 4.4 80 28-107 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 3.1E-35 6.7E-40 356.8 46.6 356 277-874 40-413 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1E-33 2.2E-38 308.2 22.6 182 523-832 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 8.5E-31 1.8E-35 300.5 28.4 233 355-836 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 6.4E-29 1.4E-33 289.7 33.5 232 353-837 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 3.3E-27 7.1E-32 275.2 33.1 288 352-888 45-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 5.8E-27 1.2E-31 269.9 33.8 232 352-837 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 5.8E-25 1.3E-29 259.5 31.2 265 354-862 64-355 (504)
21 PRK11234 nfrB bacteriophage N4 99.9 1.2E-24 2.6E-29 266.1 28.2 197 539-865 132-363 (727)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 3.9E-25 8.5E-30 231.2 20.5 229 356-834 1-234 (234)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 1E-24 2.2E-29 230.3 21.4 228 356-830 1-232 (232)
24 cd06435 CESA_NdvC_like NdvC_li 99.9 2.3E-23 5E-28 219.6 22.7 172 525-835 58-233 (236)
25 cd06427 CESA_like_2 CESA_like_ 99.9 4.7E-23 1E-27 219.8 20.7 233 356-836 1-236 (241)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 2.5E-23 5.5E-28 217.8 9.8 224 356-829 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 2.1E-19 4.5E-24 218.4 29.3 171 539-835 140-342 (703)
28 TIGR03472 HpnI hopanoid biosyn 99.8 1.1E-19 2.4E-24 207.8 24.6 235 353-830 38-272 (373)
29 cd04190 Chitin_synth_C C-termi 99.8 5.4E-21 1.2E-25 205.7 11.9 52 779-832 190-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.8 2.8E-19 6.1E-24 185.8 18.1 226 360-829 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 9.1E-19 2E-23 181.3 17.6 195 356-829 1-195 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 9.4E-18 2E-22 176.3 17.6 58 539-605 63-120 (235)
33 COG2943 MdoH Membrane glycosyl 99.8 3.2E-15 7E-20 171.4 37.2 218 524-876 213-435 (736)
34 cd06439 CESA_like_1 CESA_like_ 99.8 4.3E-17 9.3E-22 173.6 19.8 127 352-604 25-151 (251)
35 TIGR03469 HonB hopene-associat 99.7 2.3E-16 5.1E-21 181.4 26.5 135 352-600 36-171 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.7 3.6E-15 7.8E-20 157.0 20.6 55 780-836 179-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.7 1.3E-15 2.9E-20 156.7 15.7 138 560-830 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 7.4E-14 1.6E-18 144.8 13.5 115 524-645 51-175 (191)
39 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 3.6E-12 7.9E-17 130.8 17.0 122 356-601 1-123 (202)
40 cd06438 EpsO_like EpsO protein 99.4 1.1E-12 2.3E-17 134.4 12.0 62 538-605 61-123 (183)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.4 1.6E-11 3.4E-16 126.3 16.9 65 525-603 57-122 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 3.2E-11 6.8E-16 125.3 10.6 60 538-605 15-74 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 2.2E-10 4.7E-15 116.0 16.3 55 540-603 62-117 (202)
44 cd04196 GT_2_like_d Subfamily 99.2 5.7E-10 1.2E-14 115.0 15.9 65 525-603 56-121 (214)
45 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 9.7E-10 2.1E-14 121.8 17.7 109 360-585 2-110 (299)
46 cd02522 GT_2_like_a GT_2_like_ 99.1 2.9E-09 6.3E-14 110.9 18.1 40 358-403 1-40 (221)
47 cd06420 GT2_Chondriotin_Pol_N 99.1 3.3E-09 7.2E-14 107.2 17.2 52 525-586 55-106 (182)
48 cd04186 GT_2_like_c Subfamily 99.1 3E-09 6.4E-14 104.6 15.8 50 540-598 61-111 (166)
49 PLN02726 dolichyl-phosphate be 99.0 9.3E-09 2E-13 110.6 18.1 60 525-598 70-129 (243)
50 PF14570 zf-RING_4: RING/Ubox 99.0 1.3E-10 2.9E-15 96.1 2.8 48 39-89 1-48 (48)
51 cd06913 beta3GnTL1_like Beta 1 99.0 1E-08 2.3E-13 107.7 16.0 43 360-407 1-43 (219)
52 PF03142 Chitin_synth_2: Chiti 99.0 1.2E-07 2.6E-12 113.4 26.7 54 780-835 324-379 (527)
53 cd06423 CESA_like CESA_like is 99.0 6.9E-09 1.5E-13 100.9 13.4 63 525-601 55-118 (180)
54 cd02526 GT2_RfbF_like RfbF is 99.0 5.2E-09 1.1E-13 110.4 13.5 65 525-601 49-117 (237)
55 PF00535 Glycos_transf_2: Glyc 98.9 1.6E-09 3.4E-14 105.7 7.5 110 524-645 54-165 (169)
56 cd06442 DPM1_like DPM1_like re 98.9 2.3E-08 4.9E-13 104.5 16.4 60 525-598 55-114 (224)
57 cd04185 GT_2_like_b Subfamily 98.9 1.8E-08 4E-13 104.1 15.0 65 525-601 53-117 (202)
58 cd04188 DPG_synthase DPG_synth 98.7 2.4E-07 5.1E-12 97.0 14.6 62 525-600 59-120 (211)
59 PRK10073 putative glycosyl tra 98.7 3.7E-07 8E-12 103.8 16.1 110 354-586 4-113 (328)
60 cd04179 DPM_DPG-synthase_like 98.6 2.2E-07 4.7E-12 94.0 12.1 65 525-603 56-120 (185)
61 TIGR01556 rhamnosyltran L-rham 98.6 8.6E-07 1.9E-11 97.3 16.9 68 524-601 46-113 (281)
62 PRK10018 putative glycosyl tra 98.6 1.3E-06 2.9E-11 97.4 16.9 53 523-585 60-112 (279)
63 PRK10063 putative glycosyl tra 98.5 2.9E-06 6.3E-11 92.8 18.3 48 356-407 1-49 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.4 4.6E-06 1E-10 79.1 14.4 60 525-598 54-114 (156)
65 cd04187 DPM1_like_bac Bacteria 98.4 2.2E-06 4.8E-11 87.2 12.3 105 524-646 56-160 (181)
66 PF10111 Glyco_tranf_2_2: Glyc 98.3 1.6E-05 3.4E-10 88.4 16.9 62 540-607 75-136 (281)
67 KOG2571 Chitin synthase/hyalur 98.3 1.8E-05 4E-10 98.3 17.9 52 780-833 549-600 (862)
68 COG1216 Predicted glycosyltran 98.3 3E-05 6.6E-10 87.0 17.8 69 523-603 56-126 (305)
69 PTZ00260 dolichyl-phosphate be 98.2 2.4E-05 5.3E-10 89.4 16.7 51 525-585 139-189 (333)
70 PRK13915 putative glucosyl-3-p 98.1 1.9E-05 4E-10 89.4 11.9 51 539-597 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.6 0.00058 1.3E-08 77.9 12.7 40 540-584 77-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.4 0.0029 6.4E-08 72.5 15.3 159 538-828 155-314 (431)
73 COG0463 WcaA Glycosyltransfera 97.0 0.0054 1.2E-07 59.1 10.8 47 355-407 2-48 (291)
74 cd02511 Beta4Glucosyltransfera 97.0 0.0053 1.1E-07 65.9 11.6 41 541-586 59-99 (229)
75 COG5175 MOT2 Transcriptional r 96.6 0.00082 1.8E-08 75.3 1.7 48 38-88 16-63 (480)
76 TIGR00570 cdk7 CDK-activating 95.3 0.018 3.9E-07 65.3 4.6 60 35-96 2-61 (309)
77 cd02514 GT13_GLCNAC-TI GT13_GL 95.1 0.23 5.1E-06 57.5 12.9 41 359-403 3-43 (334)
78 PF14446 Prok-RING_1: Prokaryo 94.9 0.019 4.2E-07 49.4 2.5 45 36-88 5-51 (54)
79 PF02364 Glucan_synthase: 1,3- 93.4 1.7 3.6E-05 55.4 16.0 112 722-868 380-493 (817)
80 KOG2978 Dolichol-phosphate man 90.3 1.6 3.5E-05 46.8 9.4 53 524-586 64-116 (238)
81 cd00162 RING RING-finger (Real 88.3 0.47 1E-05 37.1 2.9 44 38-87 1-44 (45)
82 PF05290 Baculo_IE-1: Baculovi 85.8 0.49 1.1E-05 47.8 2.2 52 37-92 81-135 (140)
83 smart00504 Ubox Modified RING 82.0 1.5 3.2E-05 37.8 3.3 44 38-89 3-46 (63)
84 KOG2977 Glycosyltransferase [G 80.5 9.2 0.0002 43.6 9.5 40 541-584 145-186 (323)
85 KOG0823 Predicted E3 ubiquitin 77.8 2.1 4.6E-05 47.0 3.6 47 35-89 46-95 (230)
86 PHA02862 5L protein; Provision 76.5 1.8 3.8E-05 44.5 2.3 49 36-90 2-54 (156)
87 PRK14559 putative protein seri 76.4 1.4 3E-05 55.4 1.9 23 66-89 30-52 (645)
88 PHA02929 N1R/p28-like protein; 76.0 3.1 6.7E-05 46.3 4.2 55 34-89 172-227 (238)
89 PLN03208 E3 ubiquitin-protein 73.0 3.7 8E-05 44.3 3.8 54 29-89 11-79 (193)
90 PF14447 Prok-RING_4: Prokaryo 72.3 1.8 3.9E-05 37.7 1.1 47 35-91 6-52 (55)
91 PF13639 zf-RING_2: Ring finge 72.1 2.7 5.7E-05 34.1 2.0 43 38-85 2-44 (44)
92 PF13712 Glyco_tranf_2_5: Glyc 68.7 17 0.00037 39.7 7.8 58 525-595 31-89 (217)
93 PHA02825 LAP/PHD finger-like p 67.9 4.2 9.2E-05 42.5 2.8 51 35-91 7-61 (162)
94 smart00659 RPOLCX RNA polymera 67.7 3.5 7.5E-05 34.4 1.7 27 37-65 3-29 (44)
95 PF03966 Trm112p: Trm112p-like 66.5 1.5 3.2E-05 39.3 -0.7 25 67-91 42-66 (68)
96 KOG2068 MOT2 transcription fac 66.4 4.5 9.7E-05 46.7 2.9 52 36-91 249-300 (327)
97 PF03604 DNA_RNApol_7kD: DNA d 65.5 4.6 9.9E-05 31.5 1.9 26 38-65 2-27 (32)
98 smart00184 RING Ring finger. E 63.0 6.4 0.00014 29.4 2.4 39 39-84 1-39 (39)
99 PF02318 FYVE_2: FYVE-type zin 62.8 1.6 3.5E-05 43.2 -1.3 48 34-84 52-100 (118)
100 KOG3800 Predicted E3 ubiquitin 60.3 6.7 0.00014 44.5 2.8 53 37-91 1-53 (300)
101 KOG2932 E3 ubiquitin ligase in 59.9 5.8 0.00013 45.3 2.2 45 49-93 84-138 (389)
102 KOG3737 Predicted polypeptide 59.7 36 0.00077 40.4 8.5 48 351-401 150-197 (603)
103 PF13923 zf-C3HC4_2: Zinc fing 59.4 9.4 0.0002 30.3 2.8 39 39-84 1-39 (39)
104 PRK00420 hypothetical protein; 56.4 5.1 0.00011 39.7 1.0 29 56-90 24-52 (112)
105 KOG0006 E3 ubiquitin-protein l 55.8 9.4 0.0002 43.7 3.0 40 31-71 310-352 (446)
106 PF00097 zf-C3HC4: Zinc finger 55.7 9 0.00019 30.3 2.1 40 39-84 1-41 (41)
107 smart00249 PHD PHD zinc finger 54.5 8.9 0.00019 30.2 1.9 43 38-84 1-47 (47)
108 PF13920 zf-C3HC4_3: Zinc fing 54.3 12 0.00025 31.3 2.7 46 37-90 3-49 (50)
109 smart00291 ZnF_ZZ Zinc-binding 54.2 14 0.00029 30.5 3.0 37 36-77 4-41 (44)
110 PF14471 DUF4428: Domain of un 53.9 8.3 0.00018 33.1 1.7 28 38-71 1-28 (51)
111 PRK15103 paraquat-inducible me 50.0 12 0.00027 44.8 3.0 31 53-92 219-249 (419)
112 COG5114 Histone acetyltransfer 49.7 6 0.00013 45.2 0.3 36 38-77 7-43 (432)
113 PHA02926 zinc finger-like prot 49.3 18 0.00038 40.0 3.7 61 34-94 168-235 (242)
114 PF07282 OrfB_Zn_ribbon: Putat 48.4 13 0.00028 33.0 2.2 33 35-68 27-59 (69)
115 PRK12495 hypothetical protein; 47.1 11 0.00023 41.5 1.7 28 56-90 43-70 (226)
116 PRK04023 DNA polymerase II lar 45.0 14 0.00031 48.1 2.6 45 34-89 624-674 (1121)
117 TIGR00155 pqiA_fam integral me 44.7 14 0.0003 44.2 2.3 29 55-91 215-243 (403)
118 PRK07220 DNA topoisomerase I; 44.4 13 0.00029 47.7 2.2 48 37-86 590-643 (740)
119 PRK00398 rpoP DNA-directed RNA 44.3 15 0.00032 30.5 1.8 27 38-65 5-31 (46)
120 KOG0457 Histone acetyltransfer 43.2 11 0.00023 45.0 1.0 58 36-100 14-74 (438)
121 cd00350 rubredoxin_like Rubred 42.1 11 0.00023 29.3 0.6 20 70-89 9-28 (33)
122 COG4818 Predicted membrane pro 41.6 1.7E+02 0.0037 28.6 8.4 26 933-958 5-30 (105)
123 KOG3736 Polypeptide N-acetylga 41.4 36 0.00078 42.6 5.2 49 352-403 138-186 (578)
124 COG4858 Uncharacterized membra 41.4 1.5E+02 0.0033 32.3 8.9 59 987-1045 100-161 (226)
125 PF06906 DUF1272: Protein of u 40.2 33 0.00072 30.2 3.2 47 38-90 7-53 (57)
126 KOG2068 MOT2 transcription fac 40.1 12 0.00027 43.2 0.9 30 62-91 1-32 (327)
127 cd02335 ZZ_ADA2 Zinc finger, Z 39.7 25 0.00054 29.7 2.4 31 38-72 2-33 (49)
128 COG0551 TopA Zn-finger domain 39.4 22 0.00048 36.1 2.5 49 34-86 15-68 (140)
129 cd02249 ZZ Zinc finger, ZZ typ 38.7 24 0.00053 29.2 2.2 31 38-73 2-33 (46)
130 KOG1941 Acetylcholine receptor 38.6 12 0.00027 43.9 0.6 69 36-107 365-439 (518)
131 TIGR02443 conserved hypothetic 36.9 24 0.00051 31.4 1.9 31 34-64 7-40 (59)
132 PF01155 HypA: Hydrogenase exp 36.6 8.2 0.00018 38.1 -1.0 30 55-91 70-99 (113)
133 PF11077 DUF2616: Protein of u 36.0 12 0.00026 39.9 -0.0 26 39-68 55-81 (173)
134 PRK12380 hydrogenase nickel in 35.7 12 0.00027 36.9 0.0 26 55-87 70-95 (113)
135 PF07649 C1_3: C1-like domain; 35.5 23 0.00049 26.8 1.4 28 38-69 2-29 (30)
136 COG4707 Uncharacterized protei 35.5 15 0.00033 35.4 0.6 44 460-514 20-70 (107)
137 PF14634 zf-RING_5: zinc-RING 35.1 39 0.00084 27.6 2.8 43 39-86 2-44 (44)
138 cd00730 rubredoxin Rubredoxin; 34.5 14 0.0003 31.7 0.1 8 80-87 36-43 (50)
139 TIGR00599 rad18 DNA repair pro 34.4 30 0.00064 41.4 2.9 52 30-89 19-71 (397)
140 PRK14973 DNA topoisomerase I; 34.4 29 0.00063 45.8 3.0 48 37-87 589-644 (936)
141 COG1996 RPC10 DNA-directed RNA 34.0 21 0.00046 30.6 1.1 29 36-65 6-34 (49)
142 TIGR01562 FdhE formate dehydro 33.9 47 0.001 38.5 4.3 43 35-86 183-232 (305)
143 COG0068 HypF Hydrogenase matur 33.7 34 0.00073 43.4 3.3 59 34-93 99-190 (750)
144 PRK11827 hypothetical protein; 33.1 30 0.00065 30.9 2.0 33 64-96 12-44 (60)
145 KOG0311 Predicted E3 ubiquitin 32.9 6.5 0.00014 45.7 -2.7 45 38-88 45-89 (381)
146 PRK00564 hypA hydrogenase nick 32.3 17 0.00038 36.1 0.5 29 55-90 71-100 (117)
147 cd02336 ZZ_RSC8 Zinc finger, Z 32.3 40 0.00086 28.4 2.5 36 38-78 2-38 (45)
148 PF03452 Anp1: Anp1; InterPro 32.0 5.4E+02 0.012 29.6 12.0 57 352-412 21-79 (269)
149 PF00628 PHD: PHD-finger; Int 31.7 36 0.00077 28.2 2.2 45 38-86 1-50 (51)
150 PF11238 DUF3039: Protein of u 31.6 14 0.0003 32.6 -0.3 13 78-90 44-56 (58)
151 PF03884 DUF329: Domain of unk 31.4 26 0.00057 31.0 1.3 34 74-107 14-53 (57)
152 COG1813 Predicted transcriptio 31.3 38 0.00083 35.9 2.7 37 39-79 6-42 (165)
153 PRK14890 putative Zn-ribbon RN 31.2 64 0.0014 28.8 3.6 49 36-86 7-56 (59)
154 PRK07219 DNA topoisomerase I; 31.2 29 0.00062 45.3 2.2 53 36-91 688-746 (822)
155 PF09484 Cas_TM1802: CRISPR-as 31.1 25 0.00054 44.0 1.6 40 33-72 195-250 (593)
156 PRK11595 DNA utilization prote 31.0 32 0.0007 37.7 2.3 39 36-87 5-43 (227)
157 COG4739 Uncharacterized protei 30.9 24 0.00052 36.6 1.2 45 45-89 77-121 (182)
158 PRK14503 mannosyl-3-phosphogly 30.8 1.6E+02 0.0034 35.1 7.7 41 538-581 142-182 (393)
159 PRK14873 primosome assembly pr 29.7 24 0.00053 44.8 1.2 10 78-87 422-431 (665)
160 KOG3005 GIY-YIG type nuclease 29.6 39 0.00084 38.3 2.6 62 24-90 170-244 (276)
161 TIGR00100 hypA hydrogenase nic 29.6 23 0.00051 35.1 0.8 28 56-90 71-98 (115)
162 KOG2824 Glutaredoxin-related p 29.4 33 0.00072 39.0 2.0 22 33-62 226-247 (281)
163 PRK03681 hypA hydrogenase nick 29.4 21 0.00045 35.4 0.4 27 56-89 71-98 (114)
164 TIGR00595 priA primosomal prot 29.2 28 0.0006 42.9 1.5 50 48-97 205-259 (505)
165 PRK04296 thymidine kinase; Pro 28.9 28 0.00061 36.9 1.4 35 37-71 141-186 (190)
166 PF13896 Glyco_transf_49: Glyc 28.5 65 0.0014 37.3 4.3 39 556-595 126-164 (317)
167 PF07851 TMPIT: TMPIT-like pro 28.4 1.1E+03 0.023 28.1 14.3 18 916-933 174-191 (330)
168 PRK12438 hypothetical protein; 28.2 7.9E+02 0.017 33.2 14.1 46 1017-1062 259-304 (991)
169 COG2191 Formylmethanofuran deh 27.6 35 0.00075 37.3 1.7 26 36-71 172-201 (206)
170 COG4391 Uncharacterized protei 27.2 25 0.00054 31.5 0.5 17 74-90 44-60 (62)
171 PF11781 RRN7: RNA polymerase 27.0 38 0.00083 27.1 1.5 23 39-63 11-33 (36)
172 PF15050 SCIMP: SCIMP protein 27.0 45 0.00097 33.6 2.2 40 923-963 2-46 (133)
173 TIGR02460 osmo_MPGsynth mannos 26.7 2E+02 0.0044 34.1 7.6 41 538-581 141-181 (381)
174 PF13248 zf-ribbon_3: zinc-rib 26.7 20 0.00043 26.4 -0.2 15 73-87 11-25 (26)
175 PRK08359 transcription factor; 26.3 26 0.00055 37.5 0.5 30 37-74 7-42 (176)
176 PF08274 PhnA_Zn_Ribbon: PhnA 26.2 28 0.00061 26.9 0.6 24 38-63 4-27 (30)
177 PF13240 zinc_ribbon_2: zinc-r 26.1 21 0.00046 25.8 -0.1 13 75-87 10-22 (23)
178 cd03031 GRX_GRX_like Glutaredo 26.1 35 0.00076 35.4 1.4 43 35-86 98-141 (147)
179 PRK06319 DNA topoisomerase I/S 25.4 44 0.00096 43.8 2.5 55 35-92 591-659 (860)
180 PRK14714 DNA polymerase II lar 25.3 39 0.00084 45.5 1.9 48 37-91 668-722 (1337)
181 PF00265 TK: Thymidine kinase; 25.1 23 0.0005 37.6 -0.1 34 37-70 138-176 (176)
182 TIGR01206 lysW lysine biosynth 25.1 50 0.0011 28.9 1.9 12 38-49 4-15 (54)
183 KOG2792 Putative cytochrome C 24.9 47 0.001 37.6 2.2 40 339-379 159-198 (280)
184 PTZ00293 thymidine kinase; Pro 24.1 37 0.0008 37.3 1.2 35 37-71 138-177 (211)
185 PF07754 DUF1610: Domain of un 24.0 66 0.0014 23.8 2.0 24 39-63 1-24 (24)
186 PF09526 DUF2387: Probable met 23.9 52 0.0011 30.3 1.9 31 34-64 6-39 (71)
187 COG2888 Predicted Zn-ribbon RN 23.9 75 0.0016 28.5 2.8 48 36-85 9-57 (61)
188 TIGR00155 pqiA_fam integral me 23.1 54 0.0012 39.3 2.4 35 54-92 12-47 (403)
189 KOG3507 DNA-directed RNA polym 23.0 38 0.00082 30.1 0.8 29 35-65 19-47 (62)
190 PF00643 zf-B_box: B-box zinc 22.7 62 0.0014 25.8 2.0 31 36-73 3-33 (42)
191 KOG2177 Predicted E3 ubiquitin 22.7 43 0.00092 36.0 1.4 44 35-86 12-55 (386)
192 cd00065 FYVE FYVE domain; Zinc 22.6 45 0.00097 28.2 1.2 38 36-76 2-39 (57)
193 COG2835 Uncharacterized conser 22.6 34 0.00075 30.5 0.5 42 55-101 8-49 (60)
194 KOG4217 Nuclear receptors of t 22.6 39 0.00085 40.9 1.1 33 34-91 267-299 (605)
195 cd02340 ZZ_NBR1_like Zinc fing 22.5 68 0.0015 26.5 2.2 29 38-71 2-31 (43)
196 smart00744 RINGv The RING-vari 22.4 1.1E+02 0.0023 26.0 3.4 45 38-85 1-49 (49)
197 PRK15103 paraquat-inducible me 22.3 42 0.00091 40.4 1.3 34 56-92 11-44 (419)
198 KOG0916 1,3-beta-glucan syntha 22.3 2E+03 0.044 30.7 16.0 81 780-869 1173-1258(1679)
199 PRK03824 hypA hydrogenase nick 22.2 32 0.00069 35.1 0.2 12 76-87 105-116 (135)
200 KOG1785 Tyrosine kinase negati 22.2 52 0.0011 39.1 1.9 48 35-89 368-416 (563)
201 PF13719 zinc_ribbon_5: zinc-r 22.1 38 0.00082 27.1 0.6 11 80-90 4-14 (37)
202 COG0551 TopA Zn-finger domain 22.1 42 0.00092 34.0 1.1 52 34-89 58-112 (140)
203 PF12773 DZR: Double zinc ribb 22.0 62 0.0013 26.9 1.9 12 36-47 12-23 (50)
204 PF04641 Rtf2: Rtf2 RING-finge 21.8 75 0.0016 35.7 3.1 52 34-91 111-163 (260)
205 PRK06393 rpoE DNA-directed RNA 21.7 42 0.00092 30.4 0.9 23 54-87 4-26 (64)
206 PF13717 zinc_ribbon_4: zinc-r 21.4 40 0.00087 26.9 0.6 10 80-89 4-13 (36)
207 TIGR03830 CxxCG_CxxCG_HTH puta 21.3 41 0.00089 32.9 0.8 41 39-89 1-42 (127)
208 TIGR02556 cas_TM1802 CRISPR-as 21.2 55 0.0012 40.9 2.1 41 36-77 170-222 (555)
209 TIGR00143 hypF [NiFe] hydrogen 21.1 72 0.0016 41.1 3.1 57 33-90 65-152 (711)
210 COG1645 Uncharacterized Zn-fin 21.1 49 0.0011 33.9 1.3 27 56-89 29-55 (131)
211 COG1198 PriA Primosomal protei 21.1 50 0.0011 42.5 1.7 44 39-94 438-491 (730)
212 PF03833 PolC_DP2: DNA polymer 21.0 32 0.0007 44.4 0.0 47 34-90 653-704 (900)
213 PRK05580 primosome assembly pr 20.9 46 0.001 42.5 1.3 44 38-93 383-436 (679)
214 KOG2857 Predicted MYND Zn-fing 20.8 52 0.0011 34.1 1.4 44 36-91 5-49 (157)
215 KOG1609 Protein involved in mR 20.5 63 0.0014 36.4 2.2 59 36-95 78-140 (323)
216 PF03107 C1_2: C1 domain; Int 20.0 72 0.0016 24.3 1.7 28 38-69 2-29 (30)
No 1
>PLN02400 cellulose synthase
Probab=100.00 E-value=0 Score=2913.54 Aligned_cols=1083 Identities=94% Similarity=1.541 Sum_probs=1013.0
Q ss_pred CCCCccccccccCCceEEEeecCCCCCCCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCC
Q 001399 1 MEANAGMVAGSHRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQS 80 (1085)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~ 80 (1085)
||+++|||||||||||||+|++|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCccCCCCcCccchhhhhhccccCCccccccccccccccccccCCCCCCCCccccCCCcccCCCCC
Q 001399 81 CPQCKTRYKRHKGSPRVEGDDEEDDIDDLENEFNYAQGNSKARRQWQGEDLELSASSRHESQQPIPLLTNGQSVSGEIPC 160 (1085)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (1085)
|||||||||||||||||+|||||||+||+||||||++.+++...+..|++.|...++++++ +++|+||+||.|++|+++
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~lt~g~~~s~ei~~ 159 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQWQGEDIELSSSSRHES-QPIPLLTHGQPVSGEIPC 159 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhccccccccccccccccCccccCcccccC-CCCccccCCcccCCCCCC
Confidence 9999999999999999999999999999999999985444322222467666555556653 578999999999999999
Q ss_pred CCCCCcccccCCCCCCCCCCccccCCCCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCC
Q 001399 161 ATPDTQSVRTTSGPLGPSERNVHSSPYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEG 240 (1085)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~ 240 (1085)
++++|+++.++.+++|..+|||||+||+|+++|+++|.+||+||+++||||||+||||||+||+||+|++.++.+...+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~~~~ 239 (1085)
T PLN02400 160 ATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKYHEG 239 (1085)
T ss_pred CCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhccccccccccc
Confidence 88888777776554445789999999999999999999999999999999999999999999999998877665533122
Q ss_pred C-CCCCCCCCCCcccccccccCCCCeeEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCchhHHHHHHHHHHHHH
Q 001399 241 K-GDIEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFA 319 (1085)
Q Consensus 241 ~-~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lWl~~~~~Ei~f~ 319 (1085)
+ ++.++++++++|+++|++.++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+
T Consensus 240 ~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFa 319 (1085)
T PLN02400 240 KGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFA 319 (1085)
T ss_pred cccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHH
Confidence 1 344433445788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccchhHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecC
Q 001399 320 LSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDD 399 (1085)
Q Consensus 320 ~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDD 399 (1085)
|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+||||||
T Consensus 320 f~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDD 399 (1085)
T PLN02400 320 LSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDD 399 (1085)
T ss_pred HHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecC
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001399 400 GSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQK 479 (1085)
Q Consensus 400 G~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~ 479 (1085)
|+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++++++
T Consensus 400 GgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~ 479 (1085)
T PLN02400 400 GSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQK 479 (1085)
T ss_pred CchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCc
Q 001399 480 MPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGA 559 (1085)
Q Consensus 480 ~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~ 559 (1085)
+|+++|+|+||++|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||
T Consensus 480 ~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP 559 (1085)
T PLN02400 480 IPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGA 559 (1085)
T ss_pred CCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCce
Q 001399 560 YLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCC 639 (1085)
Q Consensus 560 ~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcv 639 (1085)
||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+|+||||+
T Consensus 560 ~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~ 639 (1085)
T PLN02400 560 YLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCC 639 (1085)
T ss_pred eEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhh
Q 001399 640 FNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQ 719 (1085)
Q Consensus 640 fRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1085)
|||+||||++|+..+........|++||+.|++.++.+.+..++++..+..+++.++++++++++++++++++++..+++
T Consensus 640 frR~aLYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1085)
T PLN02400 640 FNRQALYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSLLMSQ 719 (1085)
T ss_pred eeeeeeccCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 99999999999865443223334556778776654333222223333344556778999999999999999999999999
Q ss_pred HHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEE
Q 001399 720 KSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISI 799 (1085)
Q Consensus 720 ~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsv 799 (1085)
++++++||+|.+|++|++++.||.+...+++++++||+||+||+||++|+||+||||+|||+|||+.||++||++||||+
T Consensus 720 ~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSv 799 (1085)
T PLN02400 720 KSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISI 799 (1085)
T ss_pred hhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceE
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHH
Q 001399 800 YCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAF 879 (1085)
Q Consensus 800 Y~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l 879 (1085)
|++|++++|.|+||+|+.++++||+|||+|++||+++++||+++|+.++|+++||++|+++++||++++++++|+++|++
T Consensus 800 Y~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l 879 (1085)
T PLN02400 800 YCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLLAYCVLPAF 879 (1085)
T ss_pred ecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877899999999999999999999999999999999
Q ss_pred HHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeE
Q 001399 880 CLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFT 959 (1085)
Q Consensus 880 ~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~ 959 (1085)
||++|++++|.++.+++++|+++|+++++++++|++|+|+++++|||+||||+|.++|+||||++++++|+|++++++|.
T Consensus 880 ~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~ 959 (1085)
T PLN02400 880 CLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFT 959 (1085)
T ss_pred HHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCcccce
Confidence 99999999999998998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 001399 960 VTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGR 1039 (1085)
Q Consensus 960 VTpKg~~~d~~~~~ly~f~ws~l~iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~gR 1039 (1085)
||+|..++++.++++|+|+|+++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||
T Consensus 960 VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR 1039 (1085)
T PLN02400 960 VTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGR 1039 (1085)
T ss_pred ecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999876556789999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCC-CCcccCCCC
Q 001399 1040 QNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKAN-SNGQCGINC 1085 (1085)
Q Consensus 1040 ~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~-~~~~~~~~~ 1085 (1085)
++|+|+||++||++||++|+||||+|+||++++ +|| ++++|||||
T Consensus 1040 ~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~-~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1040 QNRTPTIVIVWSILLASIFSLLWVRIDPFVSDT-TKAAANGQCGVNC 1085 (1085)
T ss_pred CCCCceeHHHHHHHHHHHHHHHheeccccccCC-CCchhHhhcCcCC
Confidence 999999999999999999999999999999999 999 899999999
No 2
>PLN02436 cellulose synthase A
Probab=100.00 E-value=1.5e-319 Score=2824.06 Aligned_cols=1072 Identities=69% Similarity=1.221 Sum_probs=993.6
Q ss_pred CCCCccccccccCCceEEEeecCCCCCCCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCC
Q 001399 1 MEANAGMVAGSHRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQS 80 (1085)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~ 80 (1085)
||+++||+||||||||||++++|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999999777789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCccCCCCcCccchhhhhhccccCCcc------ccccc---cccccccccc---cCCCC---CCCC
Q 001399 81 CPQCKTRYKRHKGSPRVEGDDEEDDIDDLENEFNYAQGNSK------ARRQW---QGEDLELSAS---SRHES---QQPI 145 (1085)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e~~~~~~~~~------~~~~~---~~~~~~~~~~---~~~~~---~~~~ 145 (1085)
|||||||||||||||||+||||||++||+||||||++.++. +|+|| +|++.+.+.. +..+. .+++
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQI 160 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCC
Confidence 99999999999999999999999999999999999821111 68887 6776554321 01111 2568
Q ss_pred ccccCCCcccCCCCCCCCCCcccccCCCCCCCCCCccccCCCCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHH
Q 001399 146 PLLTNGQSVSGEIPCATPDTQSVRTTSGPLGPSERNVHSSPYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLK 225 (1085)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~ 225 (1085)
|+|++|| +++|++ +++|++++++.++ .+|||||+||+|++++++.|.+||+||+++||||||+||||||+||+|
T Consensus 161 ~~~~~~~-~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~k 234 (1094)
T PLN02436 161 PLLTYGE-EDVEIS--SDRHALIVPPSTG---HGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKK 234 (1094)
T ss_pred cccccCc-ccCccC--CcccccccCCccc---ccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhh
Confidence 9999998 578887 2556665666543 359999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCC-CCCCCCCCCCcccccccccCCCCeeEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCc
Q 001399 226 QEKNMMQVTGKYSEGK-GDIEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDA 304 (1085)
Q Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a 304 (1085)
|++|++++.+. .+++ +++++.+.+++|++++|++++||+||+++++++++|||++++++|+++++||+||++|++.++
T Consensus 235 q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a 313 (1094)
T PLN02436 235 QNEKLQVVKHE-GGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDA 313 (1094)
T ss_pred hhhcccccccc-cccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 99655444442 1221 344432334678898999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHc
Q 001399 305 YPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILA 384 (1085)
Q Consensus 305 ~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la 384 (1085)
+|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||
T Consensus 314 ~~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA 393 (1094)
T PLN02436 314 YGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILA 393 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHH
Q 001399 385 VDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYE 464 (1085)
Q Consensus 385 ~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYe 464 (1085)
+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+||||||
T Consensus 394 ~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYE 473 (1094)
T PLN02436 394 VDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYE 473 (1094)
T ss_pred hcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhh
Q 001399 465 EFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGA 544 (1085)
Q Consensus 465 e~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGa 544 (1085)
|||+|||+|+++++++|+++|+|+||++|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||
T Consensus 474 e~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGA 553 (1094)
T PLN02436 474 EFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGA 553 (1094)
T ss_pred HHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhh
Confidence 99999999998889999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred hHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcccccccchhhhhhhhccc
Q 001399 545 MNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKG 624 (1085)
Q Consensus 545 lNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~g 624 (1085)
||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|
T Consensus 554 MNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~G 633 (1094)
T PLN02436 554 MNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKG 633 (1094)
T ss_pred hhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccCceehhhhhcCCCCCCcccCCCCccc-----ccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccc
Q 001399 625 LDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNII-----VKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNM 699 (1085)
Q Consensus 625 lDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~-----~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1085)
+||+|||+|+||||+|||+||||++||...+.+...++ ||+||+.|+++++.+++..+ ..++.++..+++.+
T Consensus 634 lDGlqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 710 (1094)
T PLN02436 634 LDGIQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK---KKKNREASKQIHAL 710 (1094)
T ss_pred cccCCCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccc---cccccccccccccc
Confidence 99999999999999999999999999876553332322 45677877664433221111 12333455678889
Q ss_pred hhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecc
Q 001399 700 EDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYG 779 (1085)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~yg 779 (1085)
++++++++++++|++..+++++++++||+|.+|++|++++.||.+...+++++++||+||+||+||++|+||+||||+||
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYG 790 (1094)
T PLN02436 711 ENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYG 790 (1094)
T ss_pred cccccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeecc
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhh
Q 001399 780 SVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYIN 859 (1085)
Q Consensus 780 svTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~ 859 (1085)
|+|||+.||++||++||||+|++|.++||.|+||+|+.+++.||+|||+|++||+++|++|+++|+.++|+++||++|++
T Consensus 791 SvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~ 870 (1094)
T PLN02436 791 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYIN 870 (1094)
T ss_pred ceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988778999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHH
Q 001399 860 TIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAH 939 (1085)
Q Consensus 860 ~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~ 939 (1085)
+++||++++++++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|.++++|
T Consensus 871 ~~ly~l~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~ 950 (1094)
T PLN02436 871 SVVYPWTSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSH 950 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999989889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEeccCCCCCCcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 001399 940 LFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKL 1019 (1085)
Q Consensus 940 LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~l~iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l 1019 (1085)
+||++++++|+|++++++|.||+|..+ ++.++++|+|+|+++++|+++++++|++|+++|+.+++++++++|+++++++
T Consensus 951 Lfavl~~iLKvLggs~~~F~VTsK~~d-~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l 1029 (1094)
T PLN02436 951 LFALFQGLLKVLAGVNTNFTVTSKAAD-DGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRL 1029 (1094)
T ss_pred HHHHHHHHHHHhccCcccceecccccc-cccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 999999999999999999999999887 4467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001399 1020 FFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1085 (1085)
Q Consensus 1020 ~~~~Wvv~~L~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
|+++|+++|+|||++|||||++|+||||++||++||++||||||+|+||+++ +||++++|||||
T Consensus 1030 ~~~~wvvv~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~--~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1030 FFALWVIVHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK--GGPVLEICGLDC 1093 (1094)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC--CCccccccCccC
Confidence 9999999999999999999999999999999999999999999999999999 799999999999
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=3.3e-311 Score=2761.82 Aligned_cols=1054 Identities=76% Similarity=1.314 Sum_probs=967.2
Q ss_pred cCCCCCCCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCC
Q 001399 22 HDSDSGPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDD 101 (1085)
Q Consensus 22 ~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ 101 (1085)
.|+|.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||
T Consensus 3 ~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDe 82 (1079)
T PLN02638 3 SEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDE 82 (1079)
T ss_pred CCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccc
Confidence 46677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCc-cchhhhhhccccCCcc-------ccccc---cccccccccccCCC---CCCCCccccCCCcccCCCCCCCCCCcc
Q 001399 102 EEDD-IDDLENEFNYAQGNSK-------ARRQW---QGEDLELSASSRHE---SQQPIPLLTNGQSVSGEIPCATPDTQS 167 (1085)
Q Consensus 102 ee~~-~dd~~~e~~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~ 167 (1085)
|||+ +||+||||+|++.++. +|+|| +|++.|.... .++ +++++|+||+||.+++|++.+++++++
T Consensus 83 eed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 161 (1079)
T PLN02638 83 EEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAP-NYDKEVSHNHIPLLTNGQSVSGELSAASPERLS 161 (1079)
T ss_pred cccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccc-cccccCCCCCCcccccCccccCccCCCCCcccc
Confidence 8886 8999999999853321 67787 7777554321 111 235789999999889999977777666
Q ss_pred cccCCCCCCCCCCccccCCCCCCC-CCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccC----CCCCC
Q 001399 168 VRTTSGPLGPSERNVHSSPYTDPR-QPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKY----SEGKG 242 (1085)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~----~~~~~ 242 (1085)
+.++.+ ++||| ||+|+. +|.+.|+|||+||+++||||||+||||||+||+||+||+.++.+.. ++|.+
T Consensus 162 ~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~ 234 (1079)
T PLN02638 162 MASPGA----GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGG 234 (1079)
T ss_pred ccCccc----cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcC
Confidence 655544 24888 899865 7889999999999999999999999999999999998776555432 12223
Q ss_pred CCCC-CCCCCcccccccccCCCCeeEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCchhHHHHHHHHHHHHHHH
Q 001399 243 DIEG-TGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALS 321 (1085)
Q Consensus 243 ~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lWl~~~~~Ei~f~~~ 321 (1085)
+.++ ++.+++|+++++++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~ 314 (1079)
T PLN02638 235 DIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALS 314 (1079)
T ss_pred CCCCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence 3322 223467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccchhHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCC
Q 001399 322 WLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGS 401 (1085)
Q Consensus 322 wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~ 401 (1085)
|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+
T Consensus 315 Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGg 394 (1079)
T PLN02638 315 WILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGA 394 (1079)
T ss_pred HHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001399 402 AMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMP 481 (1085)
Q Consensus 402 ~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p 481 (1085)
++||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|
T Consensus 395 S~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p 474 (1079)
T PLN02638 395 AMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVP 474 (1079)
T ss_pred hHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEE
Q 001399 482 EEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYL 561 (1085)
Q Consensus 482 ~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~I 561 (1085)
+++|+|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||++||||||
T Consensus 475 ~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfI 554 (1079)
T PLN02638 475 EEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFL 554 (1079)
T ss_pred CccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceeh
Q 001399 562 LNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFN 641 (1085)
Q Consensus 562 l~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfR 641 (1085)
||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+||
T Consensus 555 LNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fR 634 (1079)
T PLN02638 555 LNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFN 634 (1079)
T ss_pred eecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCcccCCCCcccccccCCC-CCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCC--chhhHHhhhh
Q 001399 642 RQALYGYDPVLTEEDLEPNIIVKGCCGP-RKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEG--YDDERSLLMS 718 (1085)
Q Consensus 642 R~ALyG~~p~~~~~~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 718 (1085)
|+||||++||...+.......| +||+. +++.++.+.+...+++..++.+.+.+++++++++++.++ ++++++..++
T Consensus 635 R~ALYG~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1079)
T PLN02638 635 RTALYGYEPPIKPKHKKPGFLS-SLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMS 713 (1079)
T ss_pred ehhhcCcCCccccccccccccc-ccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhh
Confidence 9999999998754321111222 35555 333222211111111112233445567788888887765 5678888999
Q ss_pred hHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEE
Q 001399 719 QKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWIS 798 (1085)
Q Consensus 719 ~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrs 798 (1085)
+.+++++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||++||++||||
T Consensus 714 ~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrS 793 (1079)
T PLN02638 714 QMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRS 793 (1079)
T ss_pred hhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcE
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHH
Q 001399 799 IYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPA 878 (1085)
Q Consensus 799 vY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~ 878 (1085)
+|++|.++||.|+||+|+.++++||+|||+|++||+++|+||+++|++++|+++||++|+++++||++++++++|+++|+
T Consensus 794 vY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~ 873 (1079)
T PLN02638 794 IYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPA 873 (1079)
T ss_pred EecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999899999999999999999999999999999999999999887789999999999999999999999999999999
Q ss_pred HHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCe
Q 001399 879 FCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNF 958 (1085)
Q Consensus 879 l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F 958 (1085)
+||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|.++++|+||++++++|+|++++++|
T Consensus 874 l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F 953 (1079)
T PLN02638 874 VCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNF 953 (1079)
T ss_pred HHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccc
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 001399 959 TVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLG 1038 (1085)
Q Consensus 959 ~VTpKg~~~d~~~~~ly~f~ws~l~iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~g 1038 (1085)
.||+|..++++.++++|+|+|++++||+++|+++|++|+++|+++++.+++++|+++++++|+++|+++|+|||++||||
T Consensus 954 ~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~g 1033 (1079)
T PLN02638 954 TVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMG 1033 (1079)
T ss_pred eeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987666789999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001399 1039 RQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1085 (1085)
Q Consensus 1039 R~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
|++|+||||++||++|+++|+||||+|+||++++ +||.+++||++|
T Consensus 1034 R~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~-~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1034 RQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRV-TGPDVEQCGINC 1079 (1079)
T ss_pred cCCCCCeeehHHHHHHHHHHHHHHheecccccCC-CCchhhccCcCC
Confidence 9999999999999999999999999999999998 999999999999
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.2e-301 Score=2672.34 Aligned_cols=1026 Identities=71% Similarity=1.250 Sum_probs=947.3
Q ss_pred CCCCccccccccCCceEEEeecCCCCCCCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCC
Q 001399 1 MEANAGMVAGSHRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQS 80 (1085)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~ 80 (1085)
||+++||+||||||||||++++| + ++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~-~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~ 78 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-E-EPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQN 78 (1040)
T ss_pred CCcccccccccccccceeeeccc-c-CCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999977 4 468999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCccCCCCcCccchhhhhhccccCCcc------ccccc---cccccccccccCCCCCCCCccccCC
Q 001399 81 CPQCKTRYKRHKGSPRVEGDDEEDDIDDLENEFNYAQGNSK------ARRQW---QGEDLELSASSRHESQQPIPLLTNG 151 (1085)
Q Consensus 81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (1085)
|||||||||||||||||+|||||||+||+||||+|++.++. +|+|+ +|++.+... +.+++|++++|
T Consensus 79 CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 153 (1040)
T PLN02189 79 CPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDE-----NNQFPPVITGV 153 (1040)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCC-----CcCCCcccccC
Confidence 99999999999999999999999999999999999842211 67777 677655442 12468899998
Q ss_pred Cc--ccCCCCCCCC--CCcccccCCCCCCCCCCccccCCCCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhh
Q 001399 152 QS--VSGEIPCATP--DTQSVRTTSGPLGPSERNVHSSPYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQE 227 (1085)
Q Consensus 152 ~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~ 227 (1085)
|+ +++|++..|+ +|+++.++.+ +|+|||+||+|.+ .|+|||+||++ ||||||+||+||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~--------wk~rv~~wk~~~~ 216 (1040)
T PLN02189 154 RSRPVSGEFPIGSGYGHGEQMLSSSL-----HKRVHPYPVSEPG----SAKWDEKKEGG--------WKERMDDWKMQQG 216 (1040)
T ss_pred ccccccCCcCccccccccccccCCcc-----cCccCcccccCCC----cccCCcccccc--------HHHHHHHHHhhcc
Confidence 73 7888884333 2334444433 4999999999854 68999999975 9999999999995
Q ss_pred hccccccccCCCCCCCCCCCCCCCcccccccccCCCCeeEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCchhH
Q 001399 228 KNMMQVTGKYSEGKGDIEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPL 307 (1085)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~l 307 (1085)
+. ++ ++ +++++|+++++++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+
T Consensus 217 ~~---------~~----~~-~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~ 282 (1040)
T PLN02189 217 NL---------GP----DP-DDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGL 282 (1040)
T ss_pred cC---------CC----CC-CCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHH
Confidence 11 11 11 233567888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCC
Q 001399 308 WLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDY 387 (1085)
Q Consensus 308 Wl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dY 387 (1085)
|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+||
T Consensus 283 W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 362 (1040)
T PLN02189 283 WLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDY 362 (1040)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHH
Q 001399 388 PVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFK 467 (1085)
Q Consensus 388 P~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k 467 (1085)
|+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||
T Consensus 363 P~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k 442 (1040)
T PLN02189 363 PVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFK 442 (1040)
T ss_pred cccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHH
Q 001399 468 VRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNA 547 (1085)
Q Consensus 468 ~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNa 547 (1085)
+|||+++++++++|+++|.|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+
T Consensus 443 vRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNa 522 (1040)
T PLN02189 443 VRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNA 522 (1040)
T ss_pred HHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcccccccchhhhhhhhcccccc
Q 001399 548 LIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDG 627 (1085)
Q Consensus 548 llrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg 627 (1085)
|+||||++||||||||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|++++|||++|+|+||
T Consensus 523 LlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDG 602 (1040)
T PLN02189 523 LIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDG 602 (1040)
T ss_pred HHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccC
Q 001399 628 IQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVE 707 (1085)
Q Consensus 628 ~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1085)
+|||+||||||+|||+||||++|++....+..+++|++||..++++++.+... + ....+++
T Consensus 603 lqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-------~~~~~~~ 663 (1040)
T PLN02189 603 IQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKNGL------------N-------GEVAALG 663 (1040)
T ss_pred CCCccccccCceeeeeeeeccCcccccccccccccchhhhccccccccccccc------------c-------ccccccc
Confidence 99999999999999999999998865544444444444555443322111000 0 0012234
Q ss_pred CchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHH
Q 001399 708 GYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILT 787 (1085)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~T 787 (1085)
+++++++..+++++++++||+|.+|++|++.+.+|.+..++++++++||++|+||+||++|+||+||||+|||+|||+.|
T Consensus 664 ~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~T 743 (1040)
T PLN02189 664 GMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILT 743 (1040)
T ss_pred ccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHH
Confidence 45566667788999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhhcCccccccC-CCCCccchhhhhhcchhhhh
Q 001399 788 GFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYN-GRLKLLERLAYINTIVYPLT 866 (1085)
Q Consensus 788 g~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~-~~L~l~QRL~Yl~~~ly~l~ 866 (1085)
|++||++||||+|++|++++|.|+||+|+.++++||+|||+|++||+++|+||+++|++ ++|+++||++|+++++||++
T Consensus 744 G~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~ 823 (1040)
T PLN02189 744 GFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFT 823 (1040)
T ss_pred HHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998763 67999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHH
Q 001399 867 SIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQG 946 (1085)
Q Consensus 867 sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~a 946 (1085)
++++++|+++|++||++|++++|.++.+++.+|+++|++++++.++|++|+|+++++||||||||+|.++++|+||++++
T Consensus 824 sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ 903 (1040)
T PLN02189 824 SLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQG 903 (1040)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCeEeccCCCCCCcCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 001399 947 LLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVI 1026 (1085)
Q Consensus 947 Llk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~l~iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv 1026 (1085)
++|+|++++++|.||+|..+ ++.++++|+|+|++++||+++|+++|++|+++|+++++.+++++|+++++++|+++|++
T Consensus 904 ilKvlggs~~~F~VTsK~~~-d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv 982 (1040)
T PLN02189 904 LLKVLAGIDTNFTVTSKATD-DDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVI 982 (1040)
T ss_pred HHHHhccCcccceecccccc-ccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHH
Confidence 99999999999999999887 55678999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001399 1027 AHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1085 (1085)
Q Consensus 1027 ~~L~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
+|+|||++|||||++|+||||++||++|+++|+||||+|+||++++ +||.+++||++|
T Consensus 983 ~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~-~~~~~~~~~~~~ 1040 (1040)
T PLN02189 983 VHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKT-KGPDVKQCGINC 1040 (1040)
T ss_pred HHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCC-CCchhhccCcCC
Confidence 9999999999999999999999999999999999999999999998 999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=6.7e-297 Score=2631.71 Aligned_cols=1001 Identities=70% Similarity=1.270 Sum_probs=915.2
Q ss_pred CCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCC-CCcCccchh
Q 001399 31 LKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGD-DEEDDIDDL 109 (1085)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd-~ee~~~dd~ 109 (1085)
-++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3778999999999999999999999999999999999999999999999999999999999999999999 567889999
Q ss_pred hhhhccccCCc-cccccc---cccccccccccCCCCCCCCccccCCCcccCCCCCCCCCCcccccCCCCCCCCCCccccC
Q 001399 110 ENEFNYAQGNS-KARRQW---QGEDLELSASSRHESQQPIPLLTNGQSVSGEIPCATPDTQSVRTTSGPLGPSERNVHSS 185 (1085)
Q Consensus 110 ~~e~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1085)
||||||...++ ..|+|+ +|++.+.+.++ + ++++|++++ ++|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~----~~~~~-------------------------- 136 (1044)
T PLN02915 90 EDEFQIKSPQDHEPVHQNVFAGSENGDYNAQQ-W--RPGGPAFSS----TGSVA-------------------------- 136 (1044)
T ss_pred hhhhccccccccchhhhhhccCCCCccccccc-c--CCCCccccC----CCCcC--------------------------
Confidence 99999985332 346655 45544332110 0 123444443 12221
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCCCCCCCCCCCCcccccccccCCCCe
Q 001399 186 PYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGKGDIEGTGSNGEELQMADDARQPLS 265 (1085)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 265 (1085)
.+.+||+|| |||||+||||||+||+||+|+ +.+.+ +. ++.++ ..+++|+++|++.++||+
T Consensus 137 ----------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~~~-~~~~~---~~-~~~~~-~~~~~~~~~~~~~~~pL~ 196 (1044)
T PLN02915 137 ----------GKDLEAERE----GYGNAEWKDRVDKWKTRQEKR-GLVNK---DD-SDDGD-DKGDEEEYLLAEARQPLW 196 (1044)
T ss_pred ----------CCCcCcccc----CcCCHHHHHHHHHHHhhhhhh-ccccc---cc-cCCCC-CCCCcccccccccCCCce
Confidence 235899998 899999999999999999743 33333 11 11111 223678899999999999
Q ss_pred eEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCchhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhh
Q 001399 266 RVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALR 345 (1085)
Q Consensus 266 ~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r 345 (1085)
||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++|
T Consensus 197 ~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r 276 (1044)
T PLN02915 197 RKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMR 276 (1044)
T ss_pred EEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhh
Q 001399 346 YDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKK 425 (1085)
Q Consensus 346 ~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk 425 (1085)
||+++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+|||||||
T Consensus 277 ~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK 356 (1044)
T PLN02915 277 FERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKK 356 (1044)
T ss_pred hccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhh
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchh
Q 001399 426 HNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMI 505 (1085)
Q Consensus 426 ~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~ii 505 (1085)
|+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+|+||++|||++++|||+||
T Consensus 357 ~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~II 436 (1044)
T PLN02915 357 HNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMI 436 (1044)
T ss_pred cCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcC
Q 001399 506 QVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
Q Consensus 506 qv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~D 585 (1085)
|||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+|||||||
T Consensus 437 qVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD 516 (1044)
T PLN02915 437 QVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 516 (1044)
T ss_pred EEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCccc---
Q 001399 586 PAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNII--- 662 (1085)
Q Consensus 586 p~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~--- 662 (1085)
|+.|+++|||||||||+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||+||||++||..++.++.++.
T Consensus 517 ~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~ 596 (1044)
T PLN02915 517 PQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWP 596 (1044)
T ss_pred CCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876555444433
Q ss_pred --ccccCCCCCCCCCCCch-hh---------hhHh------------hhhcccCCCccccchhhhhccCCchh-hHHhhh
Q 001399 663 --VKGCCGPRKKGKGSNKK-YI---------DKKR------------AMKRTESTVPIFNMEDIEEGVEGYDD-ERSLLM 717 (1085)
Q Consensus 663 --~~~c~~~~~~~~~~~~~-~~---------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 717 (1085)
|++||+.++++++...+ .. .+++ .+...+++.+++++++|++++|++++ |+++.+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1044)
T PLN02915 597 SWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLM 676 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 34577776654332111 00 0000 01123345678899999999999887 888899
Q ss_pred hhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcE
Q 001399 718 SQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWI 797 (1085)
Q Consensus 718 ~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWr 797 (1085)
++++++++||+|.+|++|++++.+|.+...+++++++||+||+||+||++|+||+||||.|||+|||+.||++||++|||
T Consensus 677 ~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWr 756 (1044)
T PLN02915 677 SQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWK 756 (1044)
T ss_pred hhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHH
Q 001399 798 SIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLP 877 (1085)
Q Consensus 798 svY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP 877 (1085)
|+|++|.++||.|+||+|+.++++||+|||+|++||++++++|+++++.++|+++||++|+++++||++++++++|+++|
T Consensus 757 SvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp~liY~llP 836 (1044)
T PLN02915 757 SVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIP 836 (1044)
T ss_pred EEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987778999999999999999999999999999999
Q ss_pred HHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCC
Q 001399 878 AFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTN 957 (1085)
Q Consensus 878 ~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~ 957 (1085)
++||++|++++|.++.+++++|+++|++++++++++++|+|+++++|||+||||+|+++++|+||++++++|+|++++++
T Consensus 837 ~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~ 916 (1044)
T PLN02915 837 AVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTN 916 (1044)
T ss_pred HHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 99999999999988877778889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccCCCCCC-cCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 001399 958 FTVTSKASDDD-GDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGL 1036 (1085)
Q Consensus 958 F~VTpKg~~~d-~~~~~ly~f~ws~l~iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL 1036 (1085)
|+||+|+.+++ +.++++|+|+|+++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++||
T Consensus 917 F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgL 996 (1044)
T PLN02915 917 FTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGL 996 (1044)
T ss_pred ceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997643 34679999999999999999999999999999999998888999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCCCCcccCCCC
Q 001399 1037 LGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 1085 (1085)
Q Consensus 1037 ~gR~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
|||++|+||||++||++||++|+||||+|+||++++ +||.+++|||+|
T Consensus 997 mgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~-~~~~~~~~~~~~ 1044 (1044)
T PLN02915 997 MGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQ-TGPILKQCGVEC 1044 (1044)
T ss_pred hCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCC-CCccccccCCCC
Confidence 999999999999999999999999999999999998 999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=4.7e-282 Score=2491.88 Aligned_cols=971 Identities=68% Similarity=1.208 Sum_probs=873.8
Q ss_pred CCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCccchhhhh
Q 001399 33 NLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDIDDLENE 112 (1085)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e 112 (1085)
++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| |||++||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 568999999999999999999999999999999999999999999999999999998 57778999999
Q ss_pred hccccCCccccccccccccccccccCCCCCCCCccccCCCcccCCCCCCCCCCcccccCCCCCCCCCCccccCCCCCCCC
Q 001399 113 FNYAQGNSKARRQWQGEDLELSASSRHESQQPIPLLTNGQSVSGEIPCATPDTQSVRTTSGPLGPSERNVHSSPYTDPRQ 192 (1085)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1085)
|+- +++.+. + .+++|+. .+. +.++++.+++.+...
T Consensus 71 ~~~---~~~~~~-~--------------------~~~~~~~----~~~-----------------~~~~~~~~~~~~~~~ 105 (977)
T PLN02195 71 HSR---NQSTMA-S--------------------HLNDTQD----VGI-----------------HARHISSVSTVDSEL 105 (977)
T ss_pred hcc---chhhhh-h--------------------hcccCcC----CCC-----------------CCccccccccCCCcc
Confidence 942 112111 0 1222220 000 001111111111111
Q ss_pred CCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccCCCCCCCCCCCCCCCcccccccccCCCCeeEeecCC
Q 001399 193 PVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKYSEGKGDIEGTGSNGEELQMADDARQPLSRVVPIPS 272 (1085)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 272 (1085)
| | +|||++||||||+||.||+||+.++.+... .+++.++ +++++|+++ ||.++||+||+++++
T Consensus 106 ~----------~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~pL~~~~~i~~ 168 (977)
T PLN02195 106 N----------D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HKAQIPP-EQQMEEKPS-ADAYEPLSRVIPIPR 168 (977)
T ss_pred c----------C----ccCCHHHHHHHHHHHHhhhhhccccccccc-cccCCCC-ccCCccccc-ccccCCceEEEecCc
Confidence 1 1 399999999999999999988775554221 1123322 334678886 999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhheeeecccCCchhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhhcCCCCCC
Q 001399 273 SHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEP 352 (1085)
Q Consensus 273 ~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~ 352 (1085)
++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++
T Consensus 169 ~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~ 248 (977)
T PLN02195 169 NKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYEREGEP 248 (977)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001399 353 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
Q Consensus 353 ~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~ 432 (1085)
++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 328 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRA 328 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001399 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 512 (1085)
Q Consensus 433 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~ 512 (1085)
||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|+|+||++|||++++|||+|||||++++
T Consensus 329 Pe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~ 408 (977)
T PLN02195 329 PEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGET 408 (977)
T ss_pred HHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcE
Q 001399 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKT 592 (1085)
Q Consensus 513 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~v 592 (1085)
|+.|.+|++||+||||||||||||+||+||||||+++||||++||||||||||||||+|||++||+|||||+||+.|+++
T Consensus 409 ~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~v 488 (977)
T PLN02195 409 GARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDV 488 (977)
T ss_pred CCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCccccc-ccCCCCC
Q 001399 593 CYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVK-GCCGPRK 671 (1085)
Q Consensus 593 a~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~-~c~~~~~ 671 (1085)
|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+..++.++.++.|+ +||+.++
T Consensus 489 a~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~ 568 (977)
T PLN02195 489 CYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSSCCCPTKK 568 (977)
T ss_pred EEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999987655544444442 3455443
Q ss_pred CCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchh
Q 001399 672 KGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPAS 751 (1085)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~ 751 (1085)
+....+++. .+..++.+.+.+++.++++++ ..+++++..+++++++++||+|.+|++|++++.+|.+...++++
T Consensus 569 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ 642 (977)
T PLN02195 569 KPEQDPSEI---YRDAKREDLNAAIFNLREIDN---YDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPST 642 (977)
T ss_pred cccccchhh---ccccccccccccccccccccc---cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHH
Confidence 322111000 111112222233444444332 12346777889999999999999999999999999998888999
Q ss_pred hHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcch
Q 001399 752 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSI 831 (1085)
Q Consensus 752 ~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~l 831 (1085)
+++||++|+||+||++|+||+||||+|||+|||+.||++||++||||+|++|.+++|.|+||+|+.++++||+|||+|++
T Consensus 643 ~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~l 722 (977)
T PLN02195 643 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSV 722 (977)
T ss_pred HHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchh
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred hHhhhhcCccccccC-CCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHH
Q 001399 832 EILLSRHCPIWYGYN-GRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATG 910 (1085)
Q Consensus 832 QIllsr~~Pl~~g~~-~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~ 910 (1085)
||+++|+||+++|+. ++|+++||++|+++++||++++++++|+++|++||++|++++|.++.+++++|+++|+++++++
T Consensus 723 qI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~ 802 (977)
T PLN02195 723 EIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTS 802 (977)
T ss_pred hhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHHHHH
Confidence 999999999998764 7899999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCCcCccceeeeccccchHHHHHHH
Q 001399 911 ILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVL 990 (1085)
Q Consensus 911 iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~l~iP~~~Ll 990 (1085)
++|++|+|+++++||||||||+|.++|+||||++++++|+|++++++|.||+|..+ +++++++|+|+|++++||+++++
T Consensus 803 ~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~d-d~~~~~~Y~f~~S~l~iP~ttl~ 881 (977)
T PLN02195 803 VLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAAD-DTEFGELYMVKWTTLLIPPTSLL 881 (977)
T ss_pred HHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceecccccc-ccchhcceeccceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887 56788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCC
Q 001399 991 IVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS 1070 (1085)
Q Consensus 991 ilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~ 1070 (1085)
++||+|+++|+++++.+++++|+++++++|+++|+++|+|||++|||||++|+|+||++||++|+++||||||+|+||++
T Consensus 882 ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~ 961 (977)
T PLN02195 882 IINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVG 961 (977)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeecccccc
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-Cccc-CCCC
Q 001399 1071 DDTKANS-NGQC-GINC 1085 (1085)
Q Consensus 1071 ~~~~~~~-~~~~-~~~~ 1085 (1085)
++ +||+ +++| |++|
T Consensus 962 ~~-~~~~~~~~~~~~~~ 977 (977)
T PLN02195 962 KT-DTTTLSNNCISIDC 977 (977)
T ss_pred CC-CCCchhhccCCCCC
Confidence 99 9999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=1.1e-249 Score=2223.13 Aligned_cols=953 Identities=51% Similarity=0.929 Sum_probs=829.1
Q ss_pred CccccccccC---CceEEEeecCCCCCCCCCCCCCCccccc--cCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCC
Q 001399 4 NAGMVAGSHR---RNELVRIRHDSDSGPKPLKNLNGQTCQI--CGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGT 78 (1085)
Q Consensus 4 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~ 78 (1085)
+++||||+|| |+|+|++..|.+..|+++.+..+..|.+ |+.+++.+++|++..+| ||+|.|||+||-++.|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 5789999999 9999999999999999999999999998 99999999999999999 999999999999999996
Q ss_pred CCCCCCcccccccCCCCCccCCCCcCccchhhhhhccccCCccccccccccccccccccCCCCCCC-CccccCCCcccCC
Q 001399 79 QSCPQCKTRYKRHKGSPRVEGDDEEDDIDDLENEFNYAQGNSKARRQWQGEDLELSASSRHESQQP-IPLLTNGQSVSGE 157 (1085)
Q Consensus 79 ~~CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 157 (1085)
+.||+||++||.+ |+++++ +|.++ ...++.. .+ +..++. +. +..+ ...+..+| +||
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~~~~-------~~~~~~~-~~-~~~~~~--~~-~~~~~~~~~~~~~--~~~ 223 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PDESS-------GALPLPP-PG-GSKMDR--RL-SLMKSNSLLMRSQ--TGD 223 (1135)
T ss_pred CCCCCCccccccc--------cccccc-ccccc-------ccccCCC-CC-Cccccc--cc-ccccccchhccCC--CCC
Confidence 7999999999865 332222 22111 1222110 01 000000 00 0000 01244456 677
Q ss_pred CCCCCCCCcccccCCCCCCCCCCccccCCCCCCCCCCCccccCCCCCCCCCCCCccccchhhhhHHHHhhhccccccccC
Q 001399 158 IPCATPDTQSVRTTSGPLGPSERNVHSSPYTDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTGKY 237 (1085)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~ 237 (1085)
|+| +||++++| ++|||||+.|++... ..
T Consensus 224 ~~~-----------------------------------~~w~~~~~--~~~~~~~~~~~~~~~-------------~~-- 251 (1135)
T PLN02248 224 FDH-----------------------------------NRWLFETK--GTYGYGNAVWPKDDG-------------YG-- 251 (1135)
T ss_pred CCC-----------------------------------ceeeeecc--cccccccccCccccc-------------cC--
Confidence 775 79999999 999999999998632 11
Q ss_pred CCCCCCCCCCCCCCcccccccccCCCCeeEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCchhHHHHHHHHHHH
Q 001399 238 SEGKGDIEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIW 317 (1085)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lWl~~~~~Ei~ 317 (1085)
++ .+ +.. ...+|+++|+||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+|
T Consensus 252 -~~---~~--~~~--~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~W 323 (1135)
T PLN02248 252 -DD---GG--GGG--PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIW 323 (1135)
T ss_pred -CC---CC--ccc--cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 11 01 111 11468999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHhhcccccccccchhHhHHhhhcCCCC-----CCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCc
Q 001399 318 FALSWLLDQFPKWYPVNRETYLDRLALRYDREG-----EPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKV 392 (1085)
Q Consensus 318 f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~-----~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl 392 (1085)
|+|+|+|+|++||+||+|.||+|||++|||.|+ ++++||+|||||||+||.||||++|+||||||||+|||+|||
T Consensus 324 Faf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKL 403 (1135)
T PLN02248 324 FAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKL 403 (1135)
T ss_pred HHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccce
Confidence 999999999999999999999999999998653 467899999999999999999999999999999999999999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 001399 393 SCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 472 (1085)
Q Consensus 393 ~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~ 472 (1085)
+|||||||+++||||||.|||+|||+||||||||+||||+||+||++|.|+++++.+|+|++|||+|||||||||+|||+
T Consensus 404 acYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~ 483 (1135)
T PLN02248 404 ACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRING 483 (1135)
T ss_pred eEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh------------------------------hhcCCccccccCCCCCCCCCC--------CCCCcchhhhhhcCCC-
Q 001399 473 LVAK------------------------------AQKMPEEGWTMQDGTPWPGNN--------PRDHPGMIQVFLGRSG- 513 (1085)
Q Consensus 473 l~~~------------------------------~~~~p~~~w~m~dg~~w~g~~--------~~dhp~iiqv~~~~~g- 513 (1085)
|++. ++++|+++| |+|||+|||++ ++|||+|||||+++++
T Consensus 484 l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~ 562 (1135)
T PLN02248 484 LPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSD 562 (1135)
T ss_pred hhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCc
Confidence 9641 246789999 99999999984 4699999999998754
Q ss_pred -----------CCCC--CCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHH
Q 001399 514 -----------GLDT--DGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAM 580 (1085)
Q Consensus 514 -----------~~d~--~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am 580 (1085)
..|. .+++||+||||||||||||+||+||||||+|+||||++||||||||||||||+|||++||+||
T Consensus 563 e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AM 642 (1135)
T PLN02248 563 EPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGM 642 (1135)
T ss_pred ccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcc
Confidence 1122 244999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCcEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCc
Q 001399 581 CFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPN 660 (1085)
Q Consensus 581 ~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~ 660 (1085)
||||||+ |+++|||||||+|+|+|++|||+||+++|||++|+|+||+|||+||||||+|||+||||++||+.+...+.
T Consensus 643 Cf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~- 720 (1135)
T PLN02248 643 CFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC- 720 (1135)
T ss_pred hheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc-
Confidence 9999997 99999999999999999999999999999999999999999999999999999999999999876443222
Q ss_pred ccccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHh-h
Q 001399 661 IIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFM-E 739 (1085)
Q Consensus 661 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~-e 739 (1085)
|++||+.++++++.+.. .+ ..+++++ .++ .++.+.++++||+|..|++|+.. +
T Consensus 721 --~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~-----~~~----~~~~~~~~~rfG~S~~fi~S~~~a~ 774 (1135)
T PLN02248 721 --FGSCKFTKKKKKETSAS--------------EP-EEQPDLE-----DDD----DLELSLLPKRFGNSTMFAASIPVAE 774 (1135)
T ss_pred --ccccccccccccccccc--------------cc-ccccccc-----ccc----hhhhhhhhhhhccchhhhhhhHHHh
Confidence 33455544332211100 00 0011111 111 13566789999999999999843 3
Q ss_pred hCCCCC-------------------CCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEE
Q 001399 740 QGGIPP-------------------TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIY 800 (1085)
Q Consensus 740 ~GG~p~-------------------~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY 800 (1085)
..|.+. ...++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|
T Consensus 775 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY 854 (1135)
T PLN02248 775 FQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVY 854 (1135)
T ss_pred hcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEe
Confidence 232221 2235689999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHH
Q 001399 801 CMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFC 880 (1085)
Q Consensus 801 ~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~ 880 (1085)
|++++.+|.|+||+|+.++++||+|||+|++||++++++|+++ .++|+++||++|+++++||++++++++|+++|++|
T Consensus 855 ~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~ 932 (1135)
T PLN02248 855 CVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALS 932 (1135)
T ss_pred CCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999985 46899999999999999999999999999999999
Q ss_pred HHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEe
Q 001399 881 LLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTV 960 (1085)
Q Consensus 881 Ll~G~~iip~~s~~~~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~V 960 (1085)
|++|++++|+.+..++++++.++++++++.+++++|+|+++++|||+||||+|.++++|++|++++++|+|++++++|.|
T Consensus 933 LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~V 1012 (1135)
T PLN02248 933 LFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTL 1012 (1135)
T ss_pred HHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCcccccee
Confidence 99999999987655555565667888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC--cCccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 001399 961 TSKASDDD--GDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLG 1038 (1085)
Q Consensus 961 TpKg~~~d--~~~~~ly~f~ws~l~iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~g 1038 (1085)
|+|..+.+ +.++++|+|+|+++++|+++++++|++|+++|+++++.++++.|+.+++++|+++|+++|+|||++||||
T Consensus 1013 TsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~g 1092 (1135)
T PLN02248 1013 TSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMG 1092 (1135)
T ss_pred CCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99987643 2478999999999999999999999999999999999887888999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhheeecCCCCCC
Q 001399 1039 RQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDD 1072 (1085)
Q Consensus 1039 R~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~~~ 1072 (1085)
|++|+||||++||++|+++++||||+|+||+...
T Consensus 1093 R~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~~ 1126 (1135)
T PLN02248 1093 RRGRTPTIVYVWSGLLSITISLLWVAISPPSGAA 1126 (1135)
T ss_pred cCCCCCeehHHHHHHHHHHHHHHheEeccccCcc
Confidence 9999999999999999999999999999999655
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=3.9e-217 Score=1895.53 Aligned_cols=719 Identities=71% Similarity=1.245 Sum_probs=690.7
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhh
Q 001399 358 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 437 (1085)
Q Consensus 358 VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YF 437 (1085)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+||||+||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCC
Q 001399 438 AQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDT 517 (1085)
Q Consensus 438 s~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~d~ 517 (1085)
++|.|+++++.+|+|++|||+|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||+++++|+.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEec
Q 001399 518 DGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQF 597 (1085)
Q Consensus 518 ~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~ 597 (1085)
+|++||+||||||||||||+||+||||||+|+||||++||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCC
Q 001399 598 PQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSN 677 (1085)
Q Consensus 598 PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~ 677 (1085)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++|+...+..+.++.|++||++++|+++.+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777776666666666554433
Q ss_pred chhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHH
Q 001399 678 KKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAI 757 (1085)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~ 757 (1085)
++. +++..++.+++.++++++++++++++.++|++..+++++|+++||+|++|++|+..+.|+.+...+++++|+||+
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~ 398 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAI 398 (720)
T ss_pred ccc--hhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 222 123345566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhh
Q 001399 758 HVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSR 837 (1085)
Q Consensus 758 ~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr 837 (1085)
||+||+||++|+|||||||+|||+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||+++|
T Consensus 399 ~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr 478 (720)
T PF03552_consen 399 HVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSR 478 (720)
T ss_pred HHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 001399 838 HCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWS 917 (1085)
Q Consensus 838 ~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~iLe~~ws 917 (1085)
+||+|+|+.++|+++||++|++.++|+++|+|+++|+++|++||++|++++|+++..++++|+++|+++++++++|++|+
T Consensus 479 ~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~ws 558 (720)
T PF03552_consen 479 HCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFRWS 558 (720)
T ss_pred CCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEeccCCCC-CCcCccceeeeccccchHHHHHHHHHHHHH
Q 001399 918 GVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASD-DDGDFAELYVFKWTSLLIPPTTVLIVNLVG 996 (1085)
Q Consensus 918 G~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~VTpKg~~-~d~~~~~ly~f~ws~l~iP~~~Llilnlig 996 (1085)
|+++++||||||||+|.++++|+||++++++|+|++++++|.||+|..+ +++.++++|.|+|+++++|+++|+++|++|
T Consensus 559 G~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilNLva 638 (720)
T PF03552_consen 559 GVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILNLVA 638 (720)
T ss_pred cCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 345578999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhheeecCCCCCCCCCC
Q 001399 997 IVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKAN 1076 (1085)
Q Consensus 997 iv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~ 1076 (1085)
+++|+++++++++++|+++++++|+++|+++|+|||++|||+|++|+||||++||++||++|+||||+||||++++ +||
T Consensus 639 ~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~-~~~ 717 (720)
T PF03552_consen 639 FVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKT-TGP 717 (720)
T ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCc
Q 001399 1077 SNG 1079 (1085)
Q Consensus 1077 ~~~ 1079 (1085)
+++
T Consensus 718 ~~~ 720 (720)
T PF03552_consen 718 DLK 720 (720)
T ss_pred CCC
Confidence 875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=7.3e-199 Score=1743.56 Aligned_cols=726 Identities=36% Similarity=0.636 Sum_probs=656.8
Q ss_pred cCCCCeeEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCchhHHHHHHHHHHHHHHHHHHhhcccccccccchhH
Q 001399 260 ARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYL 339 (1085)
Q Consensus 260 ~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~ 339 (1085)
+.+||++++++++.. ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999985 899999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhh
Q 001399 340 DRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKW 419 (1085)
Q Consensus 340 drL~~r~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~W 419 (1085)
|||++|++ +||+|||||+||||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCC--CCCCCCC
Q 001399 420 VPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG--TPWPGNN 497 (1085)
Q Consensus 420 vPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg--~~w~g~~ 497 (1085)
|||||||+||||+||+||+++.+ .+..++|++|||+|||||||||+||++.+ +...|.+.|+ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33558999999999999999999999864 3466777666 6899999
Q ss_pred CCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHH
Q 001399 498 PRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALK 577 (1085)
Q Consensus 498 ~~dhp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr 577 (1085)
++|||+||||+++++|+ +.+|++||+||||||||||||+||+||||||+|+||||++||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-CcEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccC
Q 001399 578 EAMCFMMDPAYG-KKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEED 656 (1085)
Q Consensus 578 ~am~ff~Dp~~g-~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~ 656 (1085)
+||||||||+.+ +++|||||||+|+ |+|+|++++|||++|+|+||+|||+|+||||+|||+||||++||.....
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999999744 5899999999998 7899999999999999999999999999999999999999988753221
Q ss_pred CCCcccccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHH
Q 001399 657 LEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAAT 736 (1085)
Q Consensus 657 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~ 736 (1085)
... . +.+ ++ ...++.+++++||+|+.|++|+
T Consensus 382 ~~~----------------~----------------~~~----------------~~-~~~~~~~~~~~fg~s~~f~~s~ 412 (756)
T PLN02190 382 GSL----------------S----------------SVA----------------TR-EFLAEDSLAREFGNSKEMVKSV 412 (756)
T ss_pred ccc----------------c----------------ccc----------------cc-cccchhhhhhhcCCcHHHHHHH
Confidence 000 0 000 00 0233556788999999999999
Q ss_pred HhhhCCCCC-CCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCC
Q 001399 737 FMEQGGIPP-TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPIN 815 (1085)
Q Consensus 737 l~e~GG~p~-~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~t 815 (1085)
+.+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|+++||.|++|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~ 492 (756)
T PLN02190 413 VDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPG 492 (756)
T ss_pred HHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCC
Confidence 876644332 3345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccchhhhhhHH
Q 001399 816 LSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFA 895 (1085)
Q Consensus 816 l~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~ 895 (1085)
+.++++||+|||+|++||+++|+||+++++.++|++.||++|++.++ |++++|+++|+++|++||++|++++|.. .+
T Consensus 493 l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~~ 569 (756)
T PLN02190 493 GPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--VY 569 (756)
T ss_pred hHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--cH
Confidence 99999999999999999999999999976668999999999999988 9999999999999999999999999975 35
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEeccCCCC---------
Q 001399 896 SMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASD--------- 966 (1085)
Q Consensus 896 ~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~VTpKg~~--------- 966 (1085)
+.+++++++++++++++|++|+|+++++||||||||+|.++|+|+||++++++|+|++++++|+||+|..+
T Consensus 570 ~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~ 649 (756)
T PLN02190 570 LGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSG 649 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccc
Confidence 66778888889999999999999999999999999999999999999999999999999999999999643
Q ss_pred -----CCcCc--cceeeeccccchHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 001399 967 -----DDGDF--AELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINS---GYQSWGPLFGKLFFAIWVIAHLYPFLKGL 1036 (1085)
Q Consensus 967 -----~d~~~--~~ly~f~ws~l~iP~~~Llilnligiv~Gi~~~i~~---~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL 1036 (1085)
+++.+ +++|+|+|+++++|+++++++|++|++.|+++++.. ..+.|+. ++++++++|+++|++||++||
T Consensus 650 ~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl 728 (756)
T PLN02190 650 PSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLKGL 728 (756)
T ss_pred cccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 11122 678999999999999999999999999888876542 2244554 599999999999999999999
Q ss_pred hcCC-CCCchhHHHHHHHHHHHHHhhhe
Q 001399 1037 LGRQ-NRTPTIVIVWSILLASIFSLLWV 1063 (1085)
Q Consensus 1037 ~gR~-~~~P~~v~~~s~~la~~f~~l~v 1063 (1085)
|+|+ +++|++|+++|++|+.+|+.+.|
T Consensus 729 ~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 729 FEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred hcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 9775 69999999999999999998875
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.4e-190 Score=1681.57 Aligned_cols=707 Identities=36% Similarity=0.673 Sum_probs=650.3
Q ss_pred ccCCCCeeEeecCCCCCchhHHHHHHHHHHHHHhhheeeecccCCc-hhHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 001399 259 DARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDA-YPLWLTSVICEIWFALSWLLDQFPKWYPVNRET 337 (1085)
Q Consensus 259 ~~~~pl~~~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~ 337 (1085)
...+||++++++++.. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|+|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4567999999998885 6999999999999999999999876654 789999999999999999999999999999999
Q ss_pred hHhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhh
Q 001399 338 YLDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAR 417 (1085)
Q Consensus 338 ~~drL~~r~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~ 417 (1085)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997664 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCC-----CC
Q 001399 418 KWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDG-----TP 492 (1085)
Q Consensus 418 ~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg-----~~ 492 (1085)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 467899999999999999999999976 888887 655444 68
Q ss_pred CCCCC-CCCCcchhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCC
Q 001399 493 WPGNN-PRDHPGMIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFN 571 (1085)
Q Consensus 493 w~g~~-~~dhp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~ 571 (1085)
|++|. ++|||+||||+++++++.|.+|++||+||||||||||||+||+||||||+++|+||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98775 68999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCC
Q 001399 572 NSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPV 651 (1085)
Q Consensus 572 ~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~ 651 (1085)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred CcccCCCCcccccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHH
Q 001399 652 LTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPV 731 (1085)
Q Consensus 652 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~ 731 (1085)
.. .++++ .+++
T Consensus 393 ~~---------------------------------------------~~~~~---------------------~~~~--- 403 (734)
T PLN02893 393 LI---------------------------------------------LPEIP---------------------ELNP--- 403 (734)
T ss_pred cc---------------------------------------------chhhh---------------------hccc---
Confidence 00 00000 0000
Q ss_pred HHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCccccc
Q 001399 732 FIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGS 811 (1085)
Q Consensus 732 f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~Gl 811 (1085)
.++...+....++++||++|+||.||++|+||+||||.|+|+|||+.||++||++||||+|++|++.+|.|+
T Consensus 404 --------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~ 475 (734)
T PLN02893 404 --------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGD 475 (734)
T ss_pred --------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccC
Confidence 011123345667999999999999999999999999999999999999999999999999999988889999
Q ss_pred CCCCHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccchhhh
Q 001399 812 APINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEI 891 (1085)
Q Consensus 812 aP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~ 891 (1085)
+|+|+.++++||+|||+|++||+++|+||+++|. ++|++.||++|++.++||++++++++|+++|++||++|++++|.+
T Consensus 476 aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~ 554 (734)
T PLN02893 476 SPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKA 554 (734)
T ss_pred CCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccc
Confidence 9999999999999999999999999999999764 789999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCCcC-
Q 001399 892 SNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGD- 970 (1085)
Q Consensus 892 s~~~~~~fi~lfls~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~- 970 (1085)
+..++++++++++++++++++|++|+|.++++|||+||||+|.++++++++++++++|.|++++.+|+||+|+.+.+..
T Consensus 555 s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~ 634 (734)
T PLN02893 555 SDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSK 634 (734)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccccccc
Confidence 8888888888999999999999999999999999999999999999999999999999999999999999999764222
Q ss_pred -c-cceeeecc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCC--CCch
Q 001399 971 -F-AELYVFKW-TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQN--RTPT 1045 (1085)
Q Consensus 971 -~-~~ly~f~w-s~l~iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~gR~~--~~P~ 1045 (1085)
+ .++|+|+| +++++|+++++++|++|+++|+++++.+ ..|+.+++++++++|++++++||++||++|++ |+|+
T Consensus 635 ~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~ 712 (734)
T PLN02893 635 RYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPV 712 (734)
T ss_pred ccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Confidence 2 48899995 8899999999999999999999999875 35788899999999999999999999999986 9999
Q ss_pred hHHHHHHHHHHHHHhh
Q 001399 1046 IVIVWSILLASIFSLL 1061 (1085)
Q Consensus 1046 ~v~~~s~~la~~f~~l 1061 (1085)
+|++||++||.+++++
T Consensus 713 ~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 713 KITLISIVLAWALYLA 728 (734)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=4.4e-67 Score=640.27 Aligned_cols=491 Identities=26% Similarity=0.386 Sum_probs=386.9
Q ss_pred HH-HHHHHHHHHHHhhheeeecccCCc----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhhcCCCCCCC
Q 001399 279 RV-VIILRLIILGFFLQYRVTHPVKDA----YPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPS 353 (1085)
Q Consensus 279 R~-~i~~~l~~l~~yl~wRi~~~~~~a----~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~ 353 (1085)
|+ ++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|... ..+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPV--------PLPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc--------CCCCCcc
Confidence 55 466666778999999999987643 2356778999999999999988888888877542 1233467
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCc
Q 001399 354 QLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433 (1085)
Q Consensus 354 ~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~P 433 (1085)
.+|+|||+||||| |++.++.+|+.+++++|||.||+.|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 8999999999999 9999999999999999999999999999999987432211110
Q ss_pred hhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001399 434 EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSG 513 (1085)
Q Consensus 434 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g 513 (1085)
..|. ++..+++ .+++++ .
T Consensus 185 -------------------~~~~---~~~~~~~----~~l~~~-----------------------------------~- 202 (713)
T TIGR03030 185 -------------------QAEA---AQRREEL----KEFCRK-----------------------------------L- 202 (713)
T ss_pred -------------------hhhh---hhhHHHH----HHHHHH-----------------------------------c-
Confidence 0000 0001122 223311 1
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCcE
Q 001399 514 GLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKT 592 (1085)
Q Consensus 514 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~v 592 (1085)
++.|+.|++ |+|+||||||++++. ++||||+++|||++ ++|++|++++++| .|| ++
T Consensus 203 ----------~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 203 ----------GVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ----------CcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 388999988 788999999999996 79999999999998 6899999999988 588 89
Q ss_pred EEEecCccccCCCcc-------cccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccc
Q 001399 593 CYVQFPQRFDGIDLH-------DRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKG 665 (1085)
Q Consensus 593 a~VQ~PQ~F~nid~~-------Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 665 (1085)
++||+||.|+|.|+. +++.+++..||+.+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998754 34567788999999999999999999999999999877
Q ss_pred cCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCC
Q 001399 666 CCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPP 745 (1085)
Q Consensus 666 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~ 745 (1085)
+++||+++
T Consensus 320 ------------------------------------------------------------------------~~iGGf~~ 327 (713)
T TIGR03030 320 ------------------------------------------------------------------------DEIGGIAG 327 (713)
T ss_pred ------------------------------------------------------------------------HHcCCCCC
Confidence 45788765
Q ss_pred CCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHH
Q 001399 746 TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLR 825 (1085)
Q Consensus 746 ~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~R 825 (1085)
++++||++++++|+++||+++|++++.. +|++|+|++++++||.|
T Consensus 328 ---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~~--~g~~p~sl~~~~~Qr~R 372 (713)
T TIGR03030 328 ---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPLI--AGLAPETLSGHIGQRIR 372 (713)
T ss_pred ---------------------------------CCcCcHHHHHHHHHHcCCeEEEeccccc--cccCCCCHHHHHHHHHH
Confidence 4899999999999999999999987665 89999999999999999
Q ss_pred HhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHH
Q 001399 826 WALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFIS 905 (1085)
Q Consensus 826 WA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls 905 (1085)
|++|++|+++. .+|++ .+++++.||++|+++++||+.++++++|+++|++++++|..+++.....+ ++.+++
T Consensus 373 Wa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~----~~~~lp 444 (713)
T TIGR03030 373 WAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASALEI----LAYALP 444 (713)
T ss_pred HhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHHHH----HHHHHH
Confidence 99999999974 58987 68999999999999999999999999999999999999999887632221 222344
Q ss_pred HHHHHHHHhhh-cCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCCcCccceeeeccccchH
Q 001399 906 IFATGILEIRW-SGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLI 984 (1085)
Q Consensus 906 ~~~~~iLe~~w-sG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~l~i 984 (1085)
+++.+++.+.| .|.....||+ +. +.+....+.+...+.+.+++++.+|+||||++..+..+ .+++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~~-------~~~~~~ 512 (713)
T TIGR03030 445 HMLHSLLTNSYLFGRVRWPFWS-EV----YETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDEDY-------FSPLSR 512 (713)
T ss_pred HHHHHHHHHHHHcCCeecchHH-HH----HHHHHHHHHHHHHHHHHhCcCCCCceecCCCccccccc-------cchHHH
Confidence 44445544333 3444456775 33 33333334445556667889999999999998644332 135899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 001399 985 PPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLL 1037 (1085)
Q Consensus 985 P~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~ 1037 (1085)
|+++++++|++|+++|+++.+..+. ...+.+++.+|.++|++-+..++.
T Consensus 513 p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 513 PYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864332 234568999999999998877773
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=4.6e-67 Score=640.83 Aligned_cols=473 Identities=26% Similarity=0.414 Sum_probs=376.7
Q ss_pred HHHHHHHHHHHHhhheeeecccCCc----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhhcCCCCCCCCC
Q 001399 280 VVIILRLIILGFFLQYRVTHPVKDA----YPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPSQL 355 (1085)
Q Consensus 280 ~~i~~~l~~l~~yl~wRi~~~~~~a----~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~~l 355 (1085)
+++++.+++.++|++||++.+++.. ..+.++++++|+++.++.+++.+..+.|..|+.. +.+...+.+
T Consensus 188 ~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~ 259 (852)
T PRK11498 188 MLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLW 259 (852)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCC
Confidence 3567788889999999999987633 3456778999999999999988888888877531 223345678
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|+|||+||||| ||..++.+|+.+++++|||.+|+.|||+|||+++- +.
T Consensus 260 P~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~-------t~---------------------- 307 (852)
T PRK11498 260 PTVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE-------FR---------------------- 307 (852)
T ss_pred CcEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH-------HH----------------------
Confidence 99999999999 99999999999999999999999999999998861 11
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
+ ++++ .
T Consensus 308 -----------------------------~-------la~~-----------------------------------~--- 313 (852)
T PRK11498 308 -----------------------------Q-------FAQE-----------------------------------V--- 313 (852)
T ss_pred -----------------------------H-------HHHH-----------------------------------C---
Confidence 1 1100 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCcEEE
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCY 594 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~va~ 594 (1085)
++.|+.|++ |.|+||||+|++++. ++||||+++||||+ +++++|+++|++| .|| ++|+
T Consensus 314 --------~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~Vgl 372 (852)
T PRK11498 314 --------GVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAM 372 (852)
T ss_pred --------CcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEE
Confidence 278999987 678899999999996 79999999999998 7999999999865 788 8999
Q ss_pred EecCccccCCCccc-------ccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccC
Q 001399 595 VQFPQRFDGIDLHD-------RYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCC 667 (1085)
Q Consensus 595 VQ~PQ~F~nid~~D-------r~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~ 667 (1085)
||+||.|+|.|+.. .+.++++.||+..++|+|.+++.++|||++++||+||
T Consensus 373 VQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL---------------------- 430 (852)
T PRK11498 373 MQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL---------------------- 430 (852)
T ss_pred EEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH----------------------
Confidence 99999999987643 2467788999999999999999999999999999777
Q ss_pred CCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCC
Q 001399 668 GPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTT 747 (1085)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~ 747 (1085)
+|+||+++
T Consensus 431 ----------------------------------------------------------------------eeVGGfd~-- 438 (852)
T PRK11498 431 ----------------------------------------------------------------------DEIGGIAV-- 438 (852)
T ss_pred ----------------------------------------------------------------------HHhcCCCC--
Confidence 46898876
Q ss_pred CchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHh
Q 001399 748 NPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWA 827 (1085)
Q Consensus 748 ~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA 827 (1085)
+++|||++++++|+++||+++|++++.+ .|++|+|++++++||.||+
T Consensus 439 -------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~RWa 485 (852)
T PRK11498 439 -------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIRWA 485 (852)
T ss_pred -------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHHHH
Confidence 4899999999999999999999987766 8999999999999999999
Q ss_pred hcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHH
Q 001399 828 LGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIF 907 (1085)
Q Consensus 828 ~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~ 907 (1085)
+|++|+++ +++|++ .++|++.||++|+++++||+.+++.++|+++|++|+++|+.++.+.....+ +.+++.+
T Consensus 486 rG~lQi~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~~i~----~y~lP~~ 557 (852)
T PRK11498 486 RGMVQIFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIA----LFVLPHM 557 (852)
T ss_pred HHHHHHHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChHHHH----HHHHHHH
Confidence 99999997 578987 689999999999999999999999999999999999999888754221111 2223333
Q ss_pred HHHHHHhhh-cCCccccccccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCCCcCccceeeeccccchHHH
Q 001399 908 ATGILEIRW-SGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPP 986 (1085)
Q Consensus 908 ~~~iLe~~w-sG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~l~iP~ 986 (1085)
+...+...| +|.....||+ +. +..+.++.++ ...+...+++++.+|+||+|++..+.. .|+|. ++.|+
T Consensus 558 ~~~~l~~~~~~g~~r~~~ws-ei---ye~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~-----~~~~~-~~~P~ 626 (852)
T PRK11498 558 IHASLTNSRIQGKYRHSFWS-EI---YETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEE-----YVDWV-ISRPY 626 (852)
T ss_pred HHHHHHHHHhcCcchHhHHH-HH---HHHHHHHHHH-HHHHHHHcCccCCCcccCCCCcccccc-----ceehH-HHHHH
Confidence 333333333 3332333443 22 2333343333 233444778899999999999864433 25565 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 001399 987 TTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGL 1036 (1085)
Q Consensus 987 ~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL 1036 (1085)
++|+++|++|+++|+++.+.+.. ....+.+++++|+++|++-+..++
T Consensus 627 ~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 627 IFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999865321 223456799999999998877666
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=7.6e-45 Score=320.13 Aligned_cols=80 Identities=85% Similarity=1.620 Sum_probs=42.2
Q ss_pred CCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCccc
Q 001399 28 PKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDID 107 (1085)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~d 107 (1085)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=3.1e-35 Score=356.76 Aligned_cols=356 Identities=17% Similarity=0.218 Sum_probs=243.1
Q ss_pred hhHHHHHHHHHHHHHhhheeeecccCCc-h--------hHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhhcC
Q 001399 277 PYRVVIILRLIILGFFLQYRVTHPVKDA-Y--------PLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYD 347 (1085)
Q Consensus 277 ~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~--------~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e 347 (1085)
..|+++++..++...|..|+....+... . .+-.+++..+.+.+.+-+++.+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 3577777778888999999987754321 1 11222333444444444444332211 11111 1110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCCChHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhh
Q 001399 348 REGEPSQLAPVDIFVSTVDPLKEPPLVT----ANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFC 423 (1085)
Q Consensus 348 ~~~~~~~lp~VDvfV~T~dp~kEp~~v~----~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFC 423 (1085)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456899999999999 998754 4555677779998 589999999999872211
Q ss_pred hhcCCCCCCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcc
Q 001399 424 KKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPG 503 (1085)
Q Consensus 424 kk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~ 503 (1085)
.|+ +.+++++. +.
T Consensus 176 ------------------------------~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHH-------hc--------------------------
Confidence 011 12333321 10
Q ss_pred hhhhhhcCCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh
Q 001399 504 MIQVFLGRSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM 583 (1085)
Q Consensus 504 iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff 583 (1085)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||+++|||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 012599999988 77889999999999765 67899999999998 6899999999988
Q ss_pred c-CCCCCCcEEEEecCccccCCCcc-ccccc-chhhhhhhhccccccCC--CccccccCceehhhhhcCCCCCCcccCCC
Q 001399 584 M-DPAYGKKTCYVQFPQRFDGIDLH-DRYAN-RNIVFFDINLKGLDGIQ--GPVYVGTGCCFNRQALYGYDPVLTEEDLE 658 (1085)
Q Consensus 584 ~-Dp~~g~~va~VQ~PQ~F~nid~~-Dr~~n-~~~vFfdi~~~glDg~q--gp~yvGTgcvfRR~ALyG~~p~~~~~~~~ 658 (1085)
. || ++|+||+|+.+.|.+.- .|..+ ...++.++...|++.|| ...|+|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 99 89999999999987631 12111 23455566678888776 357899999999998841
Q ss_pred CcccccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHh
Q 001399 659 PNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFM 738 (1085)
Q Consensus 659 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~ 738 (1085)
|||.. .+.
T Consensus 311 -------~~glp-----------------------------------------------------------------~L~ 318 (691)
T PRK05454 311 -------HCGLP-----------------------------------------------------------------PLP 318 (691)
T ss_pred -------hcCCc-----------------------------------------------------------------ccc
Confidence 11110 001
Q ss_pred hhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHH
Q 001399 739 EQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSD 818 (1085)
Q Consensus 739 e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~ 818 (1085)
+.|| |..++++||+++|.+|+++|||++|+++ ...+++++|+|+.+
T Consensus 319 g~~p---------------------------------~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl~~ 364 (691)
T PRK05454 319 GRGP---------------------------------FGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNLLD 364 (691)
T ss_pred ccCC---------------------------------CCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCHHH
Confidence 1233 3336899999999999999999999965 22348999999999
Q ss_pred HHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHH
Q 001399 819 RLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYC 874 (1085)
Q Consensus 819 ~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liyl 874 (1085)
+++||.||++|++|++.. +. .+++++.+|++|++.++.++.+...++++
T Consensus 365 ~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l 413 (691)
T PRK05454 365 ELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFL 413 (691)
T ss_pred HHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999852 23 57899999999998877777664444443
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1e-33 Score=308.22 Aligned_cols=182 Identities=20% Similarity=0.278 Sum_probs=145.4
Q ss_pred CcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEecCccc
Q 001399 523 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFPQRF 601 (1085)
Q Consensus 523 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~~va~VQ~PQ~F 601 (1085)
++++|++|++ +.|+||||||+++...+ +++|||+++|||+. +.|++|++++.+|. || +||.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 55669999999998532 68899999999998 78999999999886 99 89999999999
Q ss_pred cCCCcc-ccc-ccchhhhhhhhccccccCCC--ccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCC
Q 001399 602 DGIDLH-DRY-ANRNIVFFDINLKGLDGIQG--PVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSN 677 (1085)
Q Consensus 602 ~nid~~-Dr~-~n~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~ 677 (1085)
.|.+.- .+. +-.+..|..+.+.|++.|++ .+|+||+.++||+||...
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~----------------------------- 186 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH----------------------------- 186 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-----------------------------
Confidence 987632 111 11356677788888887755 588999999999998310
Q ss_pred chhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHH
Q 001399 678 KKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAI 757 (1085)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~ 757 (1085)
..+.++||+.
T Consensus 187 ---------------------------------------------------------~~~~~i~g~g------------- 196 (254)
T cd04191 187 ---------------------------------------------------------CALPVLPGRP------------- 196 (254)
T ss_pred ---------------------------------------------------------cCCccccCCC-------------
Confidence 0001233321
Q ss_pred HhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchh
Q 001399 758 HVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIE 832 (1085)
Q Consensus 758 ~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQ 832 (1085)
||..++++||+++|++++.+||+++|.+.... .++++|+|++++++||.||++|++|
T Consensus 197 -----------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~-~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 -----------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLEG-SYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred -----------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCcc-eEeECCCCHHHHHHHHHHHHhhcCc
Confidence 35557999999999999999999999965442 3789999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=8.5e-31 Score=300.54 Aligned_cols=233 Identities=30% Similarity=0.433 Sum_probs=174.0
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCch
Q 001399 355 LAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPE 434 (1085)
Q Consensus 355 lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe 434 (1085)
+|.|||+||+|| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+.| ++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~--------------~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEE--------------LGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHH--------------HHhh-----
Confidence 699999999999 99999999999999999995 78999999999855543222 1100
Q ss_pred hhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCC
Q 001399 435 FYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGG 514 (1085)
Q Consensus 435 ~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~ 514 (1085)
| + | .+
T Consensus 109 ----------------------------~-----------------~------------~---------~~--------- 113 (439)
T COG1215 109 ----------------------------Y-----------------G------------P---------NF--------- 113 (439)
T ss_pred ----------------------------c-----------------C------------c---------ce---------
Confidence 0 0 0 00
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEE
Q 001399 515 LDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCY 594 (1085)
Q Consensus 515 ~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~ 594 (1085)
+++|. ++ .+++|+||+|.++.. +.+|+|+++|||++ +.+++|++++..|.|+. .+|.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 12211 22 678899999999996 67999999999998 79999999999999884 3479
Q ss_pred EecCccccCCCcccccccch-----hhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCC
Q 001399 595 VQFPQRFDGIDLHDRYANRN-----IVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGP 669 (1085)
Q Consensus 595 VQ~PQ~F~nid~~Dr~~n~~-----~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~ 669 (1085)
+|.||.+.+.++........ ..|+-....+.++....++.|++.+|||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL------------------------ 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL------------------------ 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH------------------------
Confidence 99999998876411111111 1122112222222244555666666666555
Q ss_pred CCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCc
Q 001399 670 RKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNP 749 (1085)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~ 749 (1085)
++.||+.+
T Consensus 227 --------------------------------------------------------------------~~~g~~~~---- 234 (439)
T COG1215 227 --------------------------------------------------------------------EEVGGWLE---- 234 (439)
T ss_pred --------------------------------------------------------------------HHhCCCCC----
Confidence 56676444
Q ss_pred hhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhc
Q 001399 750 ASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALG 829 (1085)
Q Consensus 750 ~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G 829 (1085)
.++|||.+++++|+.+|||++|++++.. ++++|+|+.++++||.||++|
T Consensus 235 -----------------------------~~i~ED~~lt~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~g 283 (439)
T COG1215 235 -----------------------------DTITEDADLTLRLHLRGYRVVYVPEAIV--WTEAPETLKELWRQRLRWARG 283 (439)
T ss_pred -----------------------------CceeccHHHHHHHHHCCCeEEEeecceE--eeeCcccHHHHHHHHHHHHcc
Confidence 5999999999999999999999987655 999999999999999999999
Q ss_pred chhHhhh
Q 001399 830 SIEILLS 836 (1085)
Q Consensus 830 ~lQIlls 836 (1085)
++|++..
T Consensus 284 ~~~~~~~ 290 (439)
T COG1215 284 GLQVLLL 290 (439)
T ss_pred cceeeeh
Confidence 9999974
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=6.4e-29 Score=289.67 Aligned_cols=232 Identities=23% Similarity=0.265 Sum_probs=170.8
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001399 353 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
Q Consensus 353 ~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~ 432 (1085)
...|.|+|+||+|| |+. .+.+|+.|+++++|| ++.++|.|||+++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999999 875 578999999999999 589999999998744332211
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001399 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 512 (1085)
Q Consensus 433 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~ 512 (1085)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCc
Q 001399 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKK 591 (1085)
Q Consensus 513 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~ 591 (1085)
.|++.++.++++ ..||+|+|++++. +++|||+++|+|.+ ++|++|++.+..| .|| +
T Consensus 129 ---------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 023555555542 3499999999986 68999999999998 7999999999866 467 8
Q ss_pred EEEEecCccccCCCcc-ccc-ccchhhhhhhhccccccCCCccc-cccCceehhhhhcCCCCCCcccCCCCcccccccCC
Q 001399 592 TCYVQFPQRFDGIDLH-DRY-ANRNIVFFDINLKGLDGIQGPVY-VGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCG 668 (1085)
Q Consensus 592 va~VQ~PQ~F~nid~~-Dr~-~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~ 668 (1085)
++.||..++..+.+.. .+. ..+...++....++.+-.+..+. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al----------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL----------------------- 242 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH-----------------------
Confidence 9999998776543211 111 11223334444444444433333 355556666554
Q ss_pred CCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCC
Q 001399 669 PRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTN 748 (1085)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 748 (1085)
+++||+.+
T Consensus 243 ---------------------------------------------------------------------~~vGg~~~--- 250 (444)
T PRK14583 243 ---------------------------------------------------------------------ADVGYWSP--- 250 (444)
T ss_pred ---------------------------------------------------------------------HHcCCCCC---
Confidence 56787554
Q ss_pred chhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhh
Q 001399 749 PASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWAL 828 (1085)
Q Consensus 749 ~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~ 828 (1085)
+.++||++++++|+.+||++.|++.... ++++|+|+.++++||.||++
T Consensus 251 ------------------------------~~i~ED~dl~~rl~~~G~~i~~~p~a~~--~~~~p~t~~~~~~Qr~RW~~ 298 (444)
T PRK14583 251 ------------------------------DMITEDIDISWKLQLKHWSVFFEPRGLC--WILMPETLRGLWKQRLRWAQ 298 (444)
T ss_pred ------------------------------CcccccHHHHHHHHHcCCeEEEeeccEE--eeeCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999976554 89999999999999999999
Q ss_pred cchhHhhhh
Q 001399 829 GSIEILLSR 837 (1085)
Q Consensus 829 G~lQIllsr 837 (1085)
|.+|+++++
T Consensus 299 G~~~~~~~~ 307 (444)
T PRK14583 299 GGAEVFLKN 307 (444)
T ss_pred cHHHHHHHH
Confidence 999999753
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=3.3e-27 Score=275.24 Aligned_cols=288 Identities=17% Similarity=0.205 Sum_probs=192.5
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR 431 (1085)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.+++.|+|.|||+++-|.+.+.|+
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 467999999999998 76 7899999999999999999999999999998554433221
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001399 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 511 (1085)
Q Consensus 432 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~ 511 (1085)
.++ +
T Consensus 102 ------------------------------------------~~~------------------------~---------- 105 (439)
T TIGR03111 102 ------------------------------------------QNE------------------------F---------- 105 (439)
T ss_pred ------------------------------------------HHh------------------------C----------
Confidence 000 0
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCCC
Q 001399 512 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGK 590 (1085)
Q Consensus 512 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~ 590 (1085)
|++ ++.+.+ +.+.||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||
T Consensus 106 -----------~~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 106 -----------PGL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred -----------CCe-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 112 121111 225699999999996 68999999999998 69999999999885 77
Q ss_pred cEEEEecCccccCCCcccc-------cccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccc
Q 001399 591 KTCYVQFPQRFDGIDLHDR-------YANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIV 663 (1085)
Q Consensus 591 ~va~VQ~PQ~F~nid~~Dr-------~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~ 663 (1085)
+++.|+..+.-. .+..+. +..++. +++.... ++.| |..- ...+
T Consensus 161 ~v~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~y~~~--------~l~~------r~~~---------s~~~----- 210 (439)
T TIGR03111 161 DIHAMTGVILTD-KELIEKTKGRFLKLIRRCE-YFEYAQA--------FLAG------RNFE---------SQVN----- 210 (439)
T ss_pred CeEEEEeEEecC-chhhhhhcchhhhHhHHhH-HHHHHHH--------HHhh------hHHH---------HhcC-----
Confidence 676665544211 110000 000000 0110000 0000 0000 0000
Q ss_pred cccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCC
Q 001399 664 KGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGI 743 (1085)
Q Consensus 664 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~ 743 (1085)
..--..|....|+++++++.||+
T Consensus 211 ---------------------------------------------------------~~~~~sGa~~~~Rr~~l~~vggf 233 (439)
T TIGR03111 211 ---------------------------------------------------------SLFTLSGAFSAFRRETILKTQLY 233 (439)
T ss_pred ---------------------------------------------------------CeEEEccHHHhhhHHHHHHhCCC
Confidence 00001255567888888899987
Q ss_pred CCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHH-CCcEEEEeCCCCCcccccCCCCHHHHHHH
Q 001399 744 PPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHA-RGWISIYCMPPRPAFKGSAPINLSDRLNQ 822 (1085)
Q Consensus 744 p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~-rGWrsvY~~~~~aaf~GlaP~tl~~~lkQ 822 (1085)
++ ++++||++++++++. .|+|+.|++++. ++.++|+|++++++|
T Consensus 234 ~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~a~--~~~~~p~t~~~~~~Q 278 (439)
T TIGR03111 234 NS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCENAI--FYVDPIDGLNKLYTQ 278 (439)
T ss_pred CC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCCCE--EEEECCcCHHHHHHH
Confidence 76 489999999999975 699999996644 488999999999999
Q ss_pred HHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccch
Q 001399 823 VLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFII 888 (1085)
Q Consensus 823 R~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ii 888 (1085)
|.||++|.+|++.....+.. ..+.++.+++.+......+...++.+++.++++++.+++..+.
T Consensus 279 R~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 279 RQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999964333332 3446666666554445555667787888888888877775443
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=5.8e-27 Score=269.89 Aligned_cols=232 Identities=25% Similarity=0.287 Sum_probs=167.1
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR 431 (1085)
....|.|.|+||+|| |+ ..+.+|+.|+++++|| ++.++|.|||.++-|.+.+.+
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~-------------------- 103 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR-------------------- 103 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH--------------------
Confidence 356899999999998 76 6789999999999999 578999999998733322111
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001399 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 511 (1085)
Q Consensus 432 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~ 511 (1085)
+++
T Consensus 104 -----------------------------------------~~~------------------------------------ 106 (420)
T PRK11204 104 -----------------------------------------LAA------------------------------------ 106 (420)
T ss_pred -----------------------------------------HHH------------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCC
Q 001399 512 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGK 590 (1085)
Q Consensus 512 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~ 590 (1085)
+.|++.++.++++. .||+|+|.+++. +++|||+++|+|.+ +.|++|++++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n~-----Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAENQ-----GKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 01347788766533 399999999996 68999999999998 6899999999988 587
Q ss_pred cEEEEecCccccCCCcccccccchh----hhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCccccccc
Q 001399 591 KTCYVQFPQRFDGIDLHDRYANRNI----VFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGC 666 (1085)
Q Consensus 591 ~va~VQ~PQ~F~nid~~Dr~~n~~~----vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c 666 (1085)
+++.||...+..|... ..+..+. .++....++..-.+...++
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 209 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTV-------------------------------- 209 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEe--------------------------------
Confidence 8999999877665321 1111011 1111111111001111110
Q ss_pred CCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCC
Q 001399 667 CGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPT 746 (1085)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~ 746 (1085)
-|....|++++++++||+.+
T Consensus 210 -----------------------------------------------------------~G~~~~~rr~~l~~vgg~~~- 229 (420)
T PRK11204 210 -----------------------------------------------------------SGVITAFRKSALHEVGYWST- 229 (420)
T ss_pred -----------------------------------------------------------cceeeeeeHHHHHHhCCCCC-
Confidence 13333455566677888655
Q ss_pred CCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHH
Q 001399 747 TNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRW 826 (1085)
Q Consensus 747 ~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RW 826 (1085)
+.++||++++++++.+||+++|+++... +++.|+|++++++||.||
T Consensus 230 --------------------------------~~~~ED~~l~~rl~~~G~~i~~~p~~~~--~~~~p~t~~~~~~Qr~RW 275 (420)
T PRK11204 230 --------------------------------DMITEDIDISWKLQLRGWDIRYEPRALC--WILMPETLKGLWKQRLRW 275 (420)
T ss_pred --------------------------------CcccchHHHHHHHHHcCCeEEeccccEE--EeECcccHHHHHHHHHHH
Confidence 4789999999999999999999976554 999999999999999999
Q ss_pred hhcchhHhhhh
Q 001399 827 ALGSIEILLSR 837 (1085)
Q Consensus 827 A~G~lQIllsr 837 (1085)
++|.+|.++..
T Consensus 276 ~~G~~~~l~~~ 286 (420)
T PRK11204 276 AQGGAEVLLKN 286 (420)
T ss_pred hcCHHHHHHHH
Confidence 99999999743
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=5.8e-25 Score=259.54 Aligned_cols=265 Identities=20% Similarity=0.231 Sum_probs=181.2
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001399 354 QLAPVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
Q Consensus 354 ~lp~VDvfV~T~dp~kEp~~v~~nTvls~l-a~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~ 432 (1085)
..|+|+|+||++| |. .++.+||-|++ ++||| ++.|+|.||+..+-|.+.+.+.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999999 86 78999999975 78997 7999999999887555543321
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001399 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 512 (1085)
Q Consensus 433 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~ 512 (1085)
++ .|
T Consensus 118 -----------------------------------------~~------------------------~~----------- 121 (504)
T PRK14716 118 -----------------------------------------AA------------------------RY----------- 121 (504)
T ss_pred -----------------------------------------HH------------------------HC-----------
Confidence 10 01
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhcc--ccCCC---cEEEEecCCCCCCchHHHHHHHHhhcCCC
Q 001399 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSA--VLTNG---AYLLNVDCDHYFNNSKALKEAMCFMMDPA 587 (1085)
Q Consensus 513 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa--v~tng---~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~ 587 (1085)
|++..+. .+++| .+.||+|||.+++... -...| ++|+++|||.+ ++|++|+....++.|
T Consensus 122 ----------p~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 122 ----------PRVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ----------CCeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 1222222 12222 3579999999987521 01234 99999999998 699999976555433
Q ss_pred CCCcEEEEecCccccCCCcccc----cccchhhhhhhhccccccCCCcc-ccccCceehhhhhcCCCCCCcccCCCCccc
Q 001399 588 YGKKTCYVQFPQRFDGIDLHDR----YANRNIVFFDINLKGLDGIQGPV-YVGTGCCFNRQALYGYDPVLTEEDLEPNII 662 (1085)
Q Consensus 588 ~g~~va~VQ~PQ~F~nid~~Dr----~~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 662 (1085)
.++||.|....+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|-
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe---------------- 245 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE---------------- 245 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH----------------
Confidence 458999987665443322 22222222334466677887765 57999999998871
Q ss_pred ccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCC
Q 001399 663 VKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGG 742 (1085)
Q Consensus 663 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG 742 (1085)
..+.+.||
T Consensus 246 ------------------------------------------------------------------------~l~~~~GG 253 (504)
T PRK14716 246 ------------------------------------------------------------------------RLAAERGG 253 (504)
T ss_pred ------------------------------------------------------------------------HHHhhcCC
Confidence 00122343
Q ss_pred CCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCC-------------ccc
Q 001399 743 IPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRP-------------AFK 809 (1085)
Q Consensus 743 ~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~a-------------af~ 809 (1085)
. +|..+++|||+++|++++.+|||++|++.+.. +++
T Consensus 254 ~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~ 302 (504)
T PRK14716 254 Q-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATR 302 (504)
T ss_pred C-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccccc
Confidence 1 25557999999999999999999999976521 245
Q ss_pred ccCCCCHHHHHHHHHHHhhcc-hhHhhhhc--CccccccCCCCCccchhhhhhcch
Q 001399 810 GSAPINLSDRLNQVLRWALGS-IEILLSRH--CPIWYGYNGRLKLLERLAYINTIV 862 (1085)
Q Consensus 810 GlaP~tl~~~lkQR~RWA~G~-lQIllsr~--~Pl~~g~~~~L~l~QRL~Yl~~~l 862 (1085)
+++|+|++++++||.||+.|. +|.....- .++. .+-+.|++|...+..++
T Consensus 303 e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 303 EFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred ccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 889999999999999999995 78874211 1111 23467788887766544
No 21
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=1.2e-24 Score=266.06 Aligned_cols=197 Identities=22% Similarity=0.342 Sum_probs=135.2
Q ss_pred CcchhhhHHHHHhcccc---CCC--cEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcccc----
Q 001399 539 HKKAGAMNALIRVSAVL---TNG--AYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDR---- 609 (1085)
Q Consensus 539 h~KAGalNallrvSav~---tng--~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr---- 609 (1085)
+.||+|||.++....-. +.+ +.++++|||.+ ++|++|+ .+.+|.++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 46999999999863100 133 56888999998 6999998 67888887 5 89999966333222221
Q ss_pred cccchhhhhhhhccccccCCCccc-cccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCchhhhhHhhhh
Q 001399 610 YANRNIVFFDINLKGLDGIQGPVY-VGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMK 688 (1085)
Q Consensus 610 ~~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 688 (1085)
|..+....+...+++++.++|++. .|+|++|.|++|
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 223344455577888888877654 599999954333
Q ss_pred cccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhC-CCCCCCCchhhHHHHHHhhccccccc
Q 001399 689 RTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQG-GIPPTTNPASLLKEAIHVISCGYEDK 767 (1085)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G~p~~~~~~~~~~ea~~v~sC~YE~~ 767 (1085)
+++.+.| |+
T Consensus 242 ----------------------------------------------~al~~~ggg~------------------------ 251 (727)
T PRK11234 242 ----------------------------------------------TALLEDGDGI------------------------ 251 (727)
T ss_pred ----------------------------------------------HHHHHhcCCC------------------------
Confidence 1234555 42
Q ss_pred CccccccceecccccchHHHHHHHHHCCcEEEEeCCCC---------------------CcccccCCCCHHHHHHHHHHH
Q 001399 768 TEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPR---------------------PAFKGSAPINLSDRLNQVLRW 826 (1085)
Q Consensus 768 T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~---------------------aaf~GlaP~tl~~~lkQR~RW 826 (1085)
+|..+++|||+++|++|+.+||+++|++.++ .+++++.|+|+++.++||.||
T Consensus 252 -------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW 324 (727)
T PRK11234 252 -------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRW 324 (727)
T ss_pred -------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHH
Confidence 4777899999999999999999999997222 336788899999999999999
Q ss_pred hhc-chhHhhhhcCcccccc--CCCCCccchhhhhhcchhhh
Q 001399 827 ALG-SIEILLSRHCPIWYGY--NGRLKLLERLAYINTIVYPL 865 (1085)
Q Consensus 827 A~G-~lQIllsr~~Pl~~g~--~~~L~l~QRL~Yl~~~ly~l 865 (1085)
.+| .+|.+.. .. |.+. .+-+.|+.|-.++..++..+
T Consensus 325 ~~G~~~q~~~~-~~--w~~~~~~~~~~~r~r~~~~~~~~s~~ 363 (727)
T PRK11234 325 IIGIVFQGFKT-LG--WTSSLTLNYFLWRDRKGAITNFVSFL 363 (727)
T ss_pred HcccHHHHHHH-hC--CCcchhhhhhhHHhhhHHHHHHHHHH
Confidence 999 6888752 21 2110 12244556655554444433
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.93 E-value=3.9e-25 Score=231.15 Aligned_cols=229 Identities=35% Similarity=0.590 Sum_probs=179.5
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+||++| |++..+..++-|+++.+||.+++.++|.|||.++-|.+-+.
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~------------------------- 52 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA------------------------- 52 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH-------------------------
Confidence 67999999999 88889999999999999999889999999998763222110
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
++..+
T Consensus 53 ------------------------------------~~~~~--------------------------------------- 57 (234)
T cd06421 53 ------------------------------------ELGVE--------------------------------------- 57 (234)
T ss_pred ------------------------------------Hhhcc---------------------------------------
Confidence 11000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcC-CCCCCcEEE
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD-PAYGKKTCY 594 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~D-p~~g~~va~ 594 (1085)
.++.|+.+++ +.+.|+||+|.+++. .+++||+.+|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0256777766 445699999999996 58999999999998 589999999999976 6 8999
Q ss_pred EecCccccCCCccc----ccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCC
Q 001399 595 VQFPQRFDGIDLHD----RYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPR 670 (1085)
Q Consensus 595 VQ~PQ~F~nid~~D----r~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~ 670 (1085)
||+++.+.+.+..+ .+......|+.....+...+....+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999998776542 2333445555555555544555666777777776555
Q ss_pred CCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCch
Q 001399 671 KKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPA 750 (1085)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~ 750 (1085)
+++||++.
T Consensus 173 -------------------------------------------------------------------~~ig~~~~----- 180 (234)
T cd06421 173 -------------------------------------------------------------------DEIGGFPT----- 180 (234)
T ss_pred -------------------------------------------------------------------HHhCCCCc-----
Confidence 45777764
Q ss_pred hhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001399 751 SLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 830 (1085)
Q Consensus 751 ~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~ 830 (1085)
..+.||++++++++.+||+++|++.... ++..|.++.++++||.||.+|.
T Consensus 181 ----------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~~~ 230 (234)
T cd06421 181 ----------------------------DSVTEDLATSLRLHAKGWRSVYVPEPLA--AGLAPETLAAYIKQRLRWARGM 230 (234)
T ss_pred ----------------------------cceeccHHHHHHHHHcCceEEEecCccc--cccCCccHHHHHHHHHHHhcCC
Confidence 3678999999999999999999987665 8999999999999999999999
Q ss_pred hhHh
Q 001399 831 IEIL 834 (1085)
Q Consensus 831 lQIl 834 (1085)
+|+|
T Consensus 231 ~~~~ 234 (234)
T cd06421 231 LQIL 234 (234)
T ss_pred eeeC
Confidence 9864
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.93 E-value=1e-24 Score=230.29 Aligned_cols=228 Identities=24% Similarity=0.332 Sum_probs=164.5
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| +++-|++.+.+..
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH----------------------
Confidence 67999999998 85 678999999999999998899999998 6665555433210
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
.++..
T Consensus 54 ----------------------------~~~~~----------------------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYAA----------------------------------------------- 58 (232)
T ss_pred ----------------------------HHHhh-----------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEE
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 595 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~V 595 (1085)
.-+++.++.+.+++|+ ||+|+|.+++. .+++||+++|+|.+ ++|++|++.+.++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 0135888888886665 99999999996 68999999999998 6899999988888888 89999
Q ss_pred ecCccccCCCccc--ccc-cchhhhhhhhccccccCCCcc-ccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCC
Q 001399 596 QFPQRFDGIDLHD--RYA-NRNIVFFDINLKGLDGIQGPV-YVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRK 671 (1085)
Q Consensus 596 Q~PQ~F~nid~~D--r~~-n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~ 671 (1085)
|....+.+.+.+- ++. -....+|...+.+.......+ .+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 163 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFN------------------------------------- 163 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEec-------------------------------------
Confidence 9987665543221 100 001111222111111111100 12
Q ss_pred CCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchh
Q 001399 672 KGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPAS 751 (1085)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~ 751 (1085)
|...+|++++++++||+.+
T Consensus 164 -------------------------------------------------------g~~~~~rr~~~~~vgg~~~------ 182 (232)
T cd06437 164 -------------------------------------------------------GTAGVWRKECIEDAGGWNH------ 182 (232)
T ss_pred -------------------------------------------------------cchhhhhHHHHHHhCCCCC------
Confidence 3344566677788899865
Q ss_pred hHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001399 752 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 830 (1085)
Q Consensus 752 ~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~ 830 (1085)
.++.||+++++||+.+||+++|++.... +...|+|+.++++||+||++|.
T Consensus 183 ---------------------------~~~~ED~~l~~rl~~~G~~~~~~~~~~v--~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 ---------------------------DTLTEDLDLSYRAQLKGWKFVYLDDVVV--PAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred ---------------------------CcchhhHHHHHHHHHCCCeEEEecccee--eeeCCcCHHHHHHHHHHhccCC
Confidence 3678999999999999999999976443 8999999999999999999984
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.91 E-value=2.3e-23 Score=219.58 Aligned_cols=172 Identities=27% Similarity=0.443 Sum_probs=123.6
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGI 604 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~ni 604 (1085)
+.++..++.+| .||||+|.+++... .+++||+++|+|-. ..|++|.+.+.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 66777666444 49999999999742 46899999999987 6899999999999877 89999998765432
Q ss_pred Ccccccc----cchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCchh
Q 001399 605 DLHDRYA----NRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKY 680 (1085)
Q Consensus 605 d~~Dr~~----n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 680 (1085)
... .+. -....+|...++.....+..+..|+++++||
T Consensus 127 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr-------------------------------------- 167 (236)
T cd06435 127 EES-LFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRR-------------------------------------- 167 (236)
T ss_pred Ccc-HHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEH--------------------------------------
Confidence 211 110 0011112222222222222333444444444
Q ss_pred hhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhh
Q 001399 681 IDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVI 760 (1085)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~ 760 (1085)
++++++||+.+
T Consensus 168 ------------------------------------------------------~~~~~iGgf~~--------------- 178 (236)
T cd06435 168 ------------------------------------------------------SALDDVGGWDE--------------- 178 (236)
T ss_pred ------------------------------------------------------HHHHHhCCCCC---------------
Confidence 45567888765
Q ss_pred cccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhh
Q 001399 761 SCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILL 835 (1085)
Q Consensus 761 sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIll 835 (1085)
....||++++++++.+|||+.|++.... +...|.|+.++++||.||++|++|++.
T Consensus 179 ------------------~~~~eD~dl~~r~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~q~~rw~~g~~~~~~ 233 (236)
T cd06435 179 ------------------WCITEDSELGLRMHEAGYIGVYVAQSYG--HGLIPDTFEAFKKQRFRWAYGAVQILK 233 (236)
T ss_pred ------------------ccccchHHHHHHHHHCCcEEEEcchhhc--cCcCcccHHHHHHHHHHHhcchhhhhh
Confidence 3578999999999999999999976554 889999999999999999999999996
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.91 E-value=4.7e-23 Score=219.82 Aligned_cols=233 Identities=24% Similarity=0.290 Sum_probs=165.4
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||+++-|.+.+.+.
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~----------------------- 53 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL----------------------- 53 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh-----------------------
Confidence 68999999999 86 7889999999999999888999999999887444422110
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
. . +
T Consensus 54 --------------------------------------~---~--~---------------------------------- 56 (241)
T cd06427 54 --------------------------------------R---L--P---------------------------------- 56 (241)
T ss_pred --------------------------------------c---c--C----------------------------------
Confidence 0 0 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEE
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 595 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~V 595 (1085)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.+ ..|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001245544332 23599999999996 78999999999998 6899999999988621 1289999
Q ss_pred ecCccccCCCccc--c-cccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCC
Q 001399 596 QFPQRFDGIDLHD--R-YANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKK 672 (1085)
Q Consensus 596 Q~PQ~F~nid~~D--r-~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~ 672 (1085)
|.+..+.+...+- + +......+|+..+++....+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 160 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIP--------------------------------------- 160 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeee---------------------------------------
Confidence 9988877543210 0 001111122222333222221111
Q ss_pred CCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhh
Q 001399 673 GKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASL 752 (1085)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~ 752 (1085)
..|+..+|++++++++||+.+
T Consensus 161 ----------------------------------------------------~~g~~~~~rr~~~~~vgg~~~------- 181 (241)
T cd06427 161 ----------------------------------------------------LGGTSNHFRTDVLRELGGWDP------- 181 (241)
T ss_pred ----------------------------------------------------cCCchHHhhHHHHHHcCCCCc-------
Confidence 123444566677788898754
Q ss_pred HHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchh
Q 001399 753 LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIE 832 (1085)
Q Consensus 753 ~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQ 832 (1085)
...+||+++++|++.+|||++|++. . ++...|+|+.++++||.||++|.+|
T Consensus 182 --------------------------~~~~eD~~l~~rl~~~G~r~~~~~~-~--~~~~~~~~~~~~~~q~~Rw~~g~~~ 232 (241)
T cd06427 182 --------------------------FNVTEDADLGLRLARAGYRTGVLNS-T--TLEEANNALGNWIRQRSRWIKGYMQ 232 (241)
T ss_pred --------------------------ccchhhHHHHHHHHHCCceEEEecc-c--ccccCcHhHHHHHHHHHHHhccHHH
Confidence 3678999999999999999999954 3 2689999999999999999999999
Q ss_pred Hhhh
Q 001399 833 ILLS 836 (1085)
Q Consensus 833 Ills 836 (1085)
++..
T Consensus 233 ~~~~ 236 (241)
T cd06427 233 TWLV 236 (241)
T ss_pred HHHH
Confidence 9974
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.89 E-value=2.5e-23 Score=217.83 Aligned_cols=224 Identities=29% Similarity=0.418 Sum_probs=137.1
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+||++| |+ ..+..|+.|+++++|| ++.++|+||+..+-|.+.+
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 78999999998 76 4999999999999995 5999999999876222211
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
++++++ .|.
T Consensus 49 -----------------------------------~~~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 49 -----------------------------------RALAAR---YPR--------------------------------- 57 (228)
T ss_dssp -----------------------------------HHHHHT---TGG---------------------------------
T ss_pred -----------------------------------HHHHHH---cCC---------------------------------
Confidence 112111 000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEE
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 595 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~V 595 (1085)
-++.|+.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0267777765321 23699999999996 56999999999998 5999999999999888 89999
Q ss_pred ecCccccCCCcccccccchhhhhhh----hccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCC
Q 001399 596 QFPQRFDGIDLHDRYANRNIVFFDI----NLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRK 671 (1085)
Q Consensus 596 Q~PQ~F~nid~~Dr~~n~~~vFfdi----~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~ 671 (1085)
|++..+++ +.+ .+..-...++.. ...+....+.+++.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 322 122112222211 1233344444556777777777655
Q ss_pred CCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchh
Q 001399 672 KGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPAS 751 (1085)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~ 751 (1085)
+++||+.+
T Consensus 172 ------------------------------------------------------------------~~~g~fd~------ 179 (228)
T PF13641_consen 172 ------------------------------------------------------------------EEVGGFDP------ 179 (228)
T ss_dssp ------------------------------------------------------------------HHH-S--S------
T ss_pred ------------------------------------------------------------------HHhCCCCC------
Confidence 46677654
Q ss_pred hHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhc
Q 001399 752 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALG 829 (1085)
Q Consensus 752 ~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G 829 (1085)
..+.||.++++++..+||+++|++.... +...|.|++++++||.||++|
T Consensus 180 ---------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~~v--~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 ---------------------------FILGEDFDLCLRLRAAGWRIVYAPDALV--YHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp ---------------------------SSSSHHHHHHHHHHHTT--EEEEEEEEE--EE--SSSTHHHHHHHHHHH--
T ss_pred ---------------------------CCcccHHHHHHHHHHCCCcEEEECCcEE--EEeCCCCHHHHHHHHhccCcC
Confidence 3778999999999999999999965443 899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.85 E-value=2.1e-19 Score=218.40 Aligned_cols=171 Identities=22% Similarity=0.292 Sum_probs=126.0
Q ss_pred CcchhhhHHHHHhc---cccCCCcE--EEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCcc-ccCCCcc---cc
Q 001399 539 HKKAGAMNALIRVS---AVLTNGAY--LLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQR-FDGIDLH---DR 609 (1085)
Q Consensus 539 h~KAGalNallrvS---av~tng~~--Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~-F~nid~~---Dr 609 (1085)
..||.|||.++... .-.+.++| |+++|||-+ ++|++|+. |-++.+. + -+||.|-. ..|...+ .-
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHHH
Confidence 45999999988752 11234455 999999998 79999985 5676643 1 36998721 1211111 23
Q ss_pred cccchhhhhhhhccccccCCCcccc-ccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCchhhhhHhhhh
Q 001399 610 YANRNIVFFDINLKGLDGIQGPVYV-GTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMK 688 (1085)
Q Consensus 610 ~~n~~~vFfdi~~~glDg~qgp~yv-GTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 688 (1085)
|+.+....|+..|+++..+.+++.+ |||++|||.||-
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~------------------------------------------ 250 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL------------------------------------------ 250 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH------------------------------------------
Confidence 6677778888899999999998874 799999998881
Q ss_pred cccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccC
Q 001399 689 RTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKT 768 (1085)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T 768 (1085)
.+.+.||..
T Consensus 251 -----------------------------------------------~l~~~gg~~------------------------ 259 (703)
T PRK15489 251 -----------------------------------------------ALMKERGNQ------------------------ 259 (703)
T ss_pred -----------------------------------------------HHHHhcCCC------------------------
Confidence 012334321
Q ss_pred ccccccceecccccchHHHHHHHHHCCcEEEEeCC---------------------CCCcccccCCCCHHHHHHHHHHHh
Q 001399 769 EWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMP---------------------PRPAFKGSAPINLSDRLNQVLRWA 827 (1085)
Q Consensus 769 ~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~---------------------~~aaf~GlaP~tl~~~lkQR~RWA 827 (1085)
+|..+++|||+++|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.||.
T Consensus 260 ------~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~ 333 (703)
T PRK15489 260 ------PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWV 333 (703)
T ss_pred ------CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHH
Confidence 47778999999999999999999999321 124567889999999999999999
Q ss_pred hcch-hHhh
Q 001399 828 LGSI-EILL 835 (1085)
Q Consensus 828 ~G~l-QIll 835 (1085)
.|-. |-..
T Consensus 334 ~Gi~~q~~~ 342 (703)
T PRK15489 334 LGIAFQGWE 342 (703)
T ss_pred hHHHHhhHH
Confidence 9987 7753
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.85 E-value=1.1e-19 Score=207.82 Aligned_cols=235 Identities=17% Similarity=0.206 Sum_probs=157.9
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001399 353 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
Q Consensus 353 ~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~ 432 (1085)
...|+|.|+||++| |.+ .+.+++.|++++|||. +.++|.||+.++-|.+.+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~--------------------- 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR--------------------- 90 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH---------------------
Confidence 34899999999999 875 5679999999999995 88999999887643332211
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001399 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 512 (1085)
Q Consensus 433 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~ 512 (1085)
+.++ ||.
T Consensus 91 ----------------------------------------~~~~------------------------~p~--------- 97 (373)
T TIGR03472 91 ----------------------------------------LRAD------------------------FPD--------- 97 (373)
T ss_pred ----------------------------------------HHHh------------------------CCC---------
Confidence 1100 100
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcE
Q 001399 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKT 592 (1085)
Q Consensus 513 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~v 592 (1085)
.++.++.+.++.| .+.|++|+|++++. +.+|+|+++|+|.+ +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1366665544333 45799999998875 78999999999998 5899999999999998 89
Q ss_pred EEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCC
Q 001399 593 CYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKK 672 (1085)
Q Consensus 593 a~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~ 672 (1085)
+.|+.+.+..+ ... +.++.... ..+.. ++-+.. + . ...|
T Consensus 157 ~~V~~~~~~~~--~~~-~~~~l~~~------~~~~~---~~~~~~-~-~--~~~~------------------------- 195 (373)
T TIGR03472 157 GLVTCLYRGRP--VPG-FWSRLGAM------GINHN---FLPSVM-V-A--RALG------------------------- 195 (373)
T ss_pred ceEeccccCCC--CCC-HHHHHHHH------Hhhhh---hhHHHH-H-H--Hhcc-------------------------
Confidence 99998644221 111 11110000 00000 000000 0 0 0000
Q ss_pred CCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhh
Q 001399 673 GKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASL 752 (1085)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~ 752 (1085)
...-..|++..|++++++++||+...
T Consensus 196 ------------------------------------------------~~~~~~G~~~a~RR~~l~~iGGf~~~------ 221 (373)
T TIGR03472 196 ------------------------------------------------RARFCFGATMALRRATLEAIGGLAAL------ 221 (373)
T ss_pred ------------------------------------------------CCccccChhhheeHHHHHHcCChHHh------
Confidence 00012466667788888899998641
Q ss_pred HHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001399 753 LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 830 (1085)
Q Consensus 753 ~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~ 830 (1085)
..+++||++++.++..+||++.|.+.... ....|+|++++++||.||++..
T Consensus 222 -------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~~v~--~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 -------------------------AHHLADDYWLGELVRALGLRVVLAPVVVD--TDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred -------------------------cccchHHHHHHHHHHHcCCeEEecchhhh--cCCCccCHHHHHHHHHHHHhhh
Confidence 13688999999999999999999865443 7788899999999999997543
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.84 E-value=5.4e-21 Score=205.75 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=47.2
Q ss_pred ccccchHHHHHHHHHCCcEEEE--eCCCCCcccccCCCCHHHHHHHHHHHhhcchh
Q 001399 779 GSVTEDILTGFKMHARGWISIY--CMPPRPAFKGSAPINLSDRLNQVLRWALGSIE 832 (1085)
Q Consensus 779 gsvTEDi~Tg~rLh~rGWrsvY--~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQ 832 (1085)
.+++||.+++++|..+||++.| ++...+ +.++|+|+.++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~--~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPGAVA--ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEecccEE--EEECCCCHHHHHHHhHhhhccccc
Confidence 4799999999999999999999 765554 999999999999999999999874
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.82 E-value=2.8e-19 Score=185.75 Aligned_cols=226 Identities=19% Similarity=0.224 Sum_probs=153.6
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001399 360 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQ 439 (1085)
Q Consensus 360 vfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YFs~ 439 (1085)
|+|||+| |+ ..+.+||-|+++++||.+++.++|.|||+++-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 75 78999999999999998889999999998763333211
Q ss_pred ccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCC
Q 001399 440 KIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDG 519 (1085)
Q Consensus 440 k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~d~~~ 519 (1085)
|. + +
T Consensus 48 -----------------------~~--------~--~------------------------------------------- 51 (229)
T cd04192 48 -----------------------FA--------A--A------------------------------------------- 51 (229)
T ss_pred -----------------------HH--------H--h-------------------------------------------
Confidence 00 0 0
Q ss_pred CCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCc
Q 001399 520 NELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQ 599 (1085)
Q Consensus 520 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ 599 (1085)
...|++.++.++. + ....|+.++|.++.. ++++||+++|+|.+ ..|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012366665543 1 235689999999985 68999999999998 6899999999988766 677888888
Q ss_pred cccCCCcc-cccccchhhhhhhhccccccCCCc-cccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCC
Q 001399 600 RFDGIDLH-DRYANRNIVFFDINLKGLDGIQGP-VYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSN 677 (1085)
Q Consensus 600 ~F~nid~~-Dr~~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~ 677 (1085)
.+...+.. ..+..-...+......+.-+++.+ ...|++.+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------------------------------- 162 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAY------------------------------------- 162 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEE-------------------------------------
Confidence 87622211 111110000111111111112211 122333334
Q ss_pred chhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHH
Q 001399 678 KKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAI 757 (1085)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~ 757 (1085)
++++++++||+++.
T Consensus 163 -------------------------------------------------------rr~~~~~~ggf~~~----------- 176 (229)
T cd04192 163 -------------------------------------------------------RKEAFFEVGGFEGN----------- 176 (229)
T ss_pred -------------------------------------------------------EHHHHHHhcCCccc-----------
Confidence 44555678887641
Q ss_pred HhhcccccccCccccccceecccccchHHHHHHHHHCCc-EEEEeCCCCCcccccCCCCHHHHHHHHHHHhhc
Q 001399 758 HVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGW-ISIYCMPPRPAFKGSAPINLSDRLNQVLRWALG 829 (1085)
Q Consensus 758 ~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGW-rsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G 829 (1085)
....+||.++.+++..+|| ++.|+..+....+...|.+++++++||+||++|
T Consensus 177 --------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 --------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred --------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 1367899999999999999 999986555555899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.80 E-value=9.1e-19 Score=181.31 Aligned_cols=195 Identities=17% Similarity=0.185 Sum_probs=146.8
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+||+|| |... +..++-|+++++||. +.++|.|||+++-|.+.+.+
T Consensus 1 p~vsviip~~n---~~~~-l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~------------------------ 50 (196)
T cd02520 1 PGVSILKPLCG---VDPN-LYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK------------------------ 50 (196)
T ss_pred CCeEEEEecCC---CCcc-HHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH------------------------
Confidence 67999999999 7654 689999999999985 88999999998744432211
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
+.++ ||. .
T Consensus 51 -------------------------------------~~~~------------------------~~~---------~-- 58 (196)
T cd02520 51 -------------------------------------LIAK------------------------YPN---------V-- 58 (196)
T ss_pred -------------------------------------HHHH------------------------CCC---------C--
Confidence 1100 000 0
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEE
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 595 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~V 595 (1085)
++.|+...++.| ...|++|||.+++. .+++||+++|+|.. ..|++|.+.+..+.+| +++.|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 144554443222 23589999999995 68999999999997 5899999999998888 67788
Q ss_pred ecCccccCCCcccccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCC
Q 001399 596 QFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKG 675 (1085)
Q Consensus 596 Q~PQ~F~nid~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~ 675 (1085)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 45577888888666
Q ss_pred CCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHH
Q 001399 676 SNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKE 755 (1085)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 755 (1085)
+++||++..
T Consensus 137 --------------------------------------------------------------~~~ggf~~~--------- 145 (196)
T cd02520 137 --------------------------------------------------------------DAIGGFEAF--------- 145 (196)
T ss_pred --------------------------------------------------------------HhccChHHH---------
Confidence 345665320
Q ss_pred HHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhc
Q 001399 756 AIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALG 829 (1085)
Q Consensus 756 a~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G 829 (1085)
...+.||+++++++..+||++.|++.... +...|.+++++++||.||++.
T Consensus 146 ----------------------~~~~~eD~~l~~rl~~~G~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 146 ----------------------ADYLAEDYFLGKLIWRLGYRVVLSPYVVM--QPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred ----------------------hHHHHHHHHHHHHHHHcCCeEEEcchhee--ccCCcccHHHHHHHHHHHhcc
Confidence 12468999999999999999999976544 889999999999999999863
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.77 E-value=9.4e-18 Score=176.34 Aligned_cols=58 Identities=26% Similarity=0.151 Sum_probs=51.7
Q ss_pred CcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCC
Q 001399 539 HKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGID 605 (1085)
Q Consensus 539 h~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid 605 (1085)
..|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 3499999999986 58999999999998 6899999999999888 899999998887664
No 33
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=3.2e-15 Score=171.41 Aligned_cols=218 Identities=21% Similarity=0.348 Sum_probs=151.6
Q ss_pred cEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCcEEEEecCcccc
Q 001399 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCYVQFPQRFD 602 (1085)
Q Consensus 524 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~va~VQ~PQ~F~ 602 (1085)
++.|-.|.+ |-..||||+-...|.-| +..+|+++||||.+. ..+.+-+.+-.| .+| +.|++||--.-.
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 377777776 56679999999999877 788999999999985 788998888888 577 899999955444
Q ss_pred CCCc-cccccc-chhhhhhhhccccccCCC--ccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCc
Q 001399 603 GIDL-HDRYAN-RNIVFFDINLKGLDGIQG--PVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNK 678 (1085)
Q Consensus 603 nid~-~Dr~~n-~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 678 (1085)
|.|- ..|..+ ..+|+=-+.--|+..||+ .-|-|.|++.|-+|+
T Consensus 282 gg~TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF--------------------------------- 328 (736)
T COG2943 282 GGDTLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAF--------------------------------- 328 (736)
T ss_pred CcchHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhh---------------------------------
Confidence 4331 011100 122333334455555554 345566666665555
Q ss_pred hhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHH
Q 001399 679 KYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIH 758 (1085)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~ 758 (1085)
.|.-|.|.-
T Consensus 329 -----------------------------------------------------------~~hcgLp~L------------ 337 (736)
T COG2943 329 -----------------------------------------------------------IEHCGLPPL------------ 337 (736)
T ss_pred -----------------------------------------------------------HHhcCCCCC------------
Confidence 333222210
Q ss_pred hhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhhhc
Q 001399 759 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRH 838 (1085)
Q Consensus 759 v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIllsr~ 838 (1085)
..+-..|. ..++.|+..+-.|.+.||. +.+.+.+...+.+.|.|+.|++++-+|||+|++|-+.
T Consensus 338 ------pG~~pFgG------~ilSHDfvEAALmRRaGW~-v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~r--- 401 (736)
T COG2943 338 ------PGRGPFGG------HILSHDFVEAALMRRAGWG-VWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHFR--- 401 (736)
T ss_pred ------CCCCCCCc------cccchHHHHHHHHhhcCce-EEEeccCCCchhhCCchHHHHHhhhhHhhhcchhhce---
Confidence 00011111 2578899999999999995 5555678888999999999999999999999999874
Q ss_pred CccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHH
Q 001399 839 CPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTL 876 (1085)
Q Consensus 839 ~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylll 876 (1085)
++. .++|.+..|++++.+++.|+++-..++++++
T Consensus 402 --l~~--~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll~ 435 (736)
T COG2943 402 --LFL--VKGLHWVSRAHFLTGVMSYLSAPLWFLFLLL 435 (736)
T ss_pred --eec--cCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 332 5899999999999999888876444444433
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.75 E-value=4.3e-17 Score=173.58 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=98.4
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR 431 (1085)
.+..|.|.|+|||+| |+ ..+..++.|+++++||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 456889999999998 65 678999999999999988899999999998733321110
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001399 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 511 (1085)
Q Consensus 432 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~ 511 (1085)
+.+
T Consensus 81 -----------------------------------------~~~------------------------------------ 83 (251)
T cd06439 81 -----------------------------------------YAD------------------------------------ 83 (251)
T ss_pred -----------------------------------------Hhh------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCc
Q 001399 512 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKK 591 (1085)
Q Consensus 512 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~ 591 (1085)
. ++.++..+++ ..|++|+|.+++. .++++|+++|+|.++ .+++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 0 1455555443 3499999999996 678999999999985 699999999999877 7
Q ss_pred EEEEecCccccCC
Q 001399 592 TCYVQFPQRFDGI 604 (1085)
Q Consensus 592 va~VQ~PQ~F~ni 604 (1085)
+++|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8899987766543
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.75 E-value=2.3e-16 Score=181.36 Aligned_cols=135 Identities=24% Similarity=0.205 Sum_probs=95.1
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR 431 (1085)
+...|+|.|+||++| |. ..+..++-|++++|||. ++.++|.|||+++-|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 76 67889999999999995 489999999998854442221
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001399 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 511 (1085)
Q Consensus 432 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~ 511 (1085)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1000 000
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccC-CCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCC
Q 001399 512 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLT-NGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGK 590 (1085)
Q Consensus 512 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~t-ng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~ 590 (1085)
-+++.++..+.+|. .-..|+.|+|.+++.+.... ++|+|+.+|+|.. ++|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01355555433332 23579999999999742111 1899999999998 6899999999999876
Q ss_pred cEEEEecCcc
Q 001399 591 KTCYVQFPQR 600 (1085)
Q Consensus 591 ~va~VQ~PQ~ 600 (1085)
++++|..+-+
T Consensus 162 ~~~~vs~~~~ 171 (384)
T TIGR03469 162 GLDLVSLMVR 171 (384)
T ss_pred CCCEEEeccc
Confidence 4556654333
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.67 E-value=3.6e-15 Score=156.99 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=48.7
Q ss_pred cccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhhh
Q 001399 780 SVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLS 836 (1085)
Q Consensus 780 svTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIlls 836 (1085)
...||.+.+++++.+|+++.|++.... .-..|.+++++++|+.||+.|.+|.+..
T Consensus 179 ~~~eD~~l~~r~~~~G~~~~~~~~~~~--~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 179 VRNEDAELNYRLRKAGYKIWLSPDIRV--YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred CccchhHHHHHHHHcCcEEEEcCCeEE--EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 346999999999999999999976554 6678899999999999999999999973
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.66 E-value=1.3e-15 Score=156.67 Aligned_cols=138 Identities=26% Similarity=0.335 Sum_probs=104.9
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcccccccchhhhhhhhc----cccccCCC-cccc
Q 001399 560 YLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINL----KGLDGIQG-PVYV 634 (1085)
Q Consensus 560 ~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~Dr~~n~~~vFfdi~~----~glDg~qg-p~yv 634 (1085)
+|+++|+|.. +.+++|++++.+|.|| ++++||+|+.+++ .++...+.+..+|+... ...+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999998 6799999999999888 8999999999863 34455555556553221 11122222 2345
Q ss_pred ccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHH
Q 001399 635 GTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERS 714 (1085)
Q Consensus 635 GTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1085)
|+|.++||+||
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 66666666554
Q ss_pred hhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHC
Q 001399 715 LLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHAR 794 (1085)
Q Consensus 715 ~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~r 794 (1085)
+++||+.. ..+++||+++++++.++
T Consensus 85 -----------------------~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~ 109 (193)
T PF13632_consen 85 -----------------------REVGGFDD--------------------------------PFSIGEDMDLGFRLRRA 109 (193)
T ss_pred -----------------------HHhCcccc--------------------------------cccccchHHHHHHHHHC
Confidence 56776540 35899999999999999
Q ss_pred CcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcc
Q 001399 795 GWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGS 830 (1085)
Q Consensus 795 GWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~ 830 (1085)
|||+.|++.... +..+|.|+.++++||+||+.|.
T Consensus 110 G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 110 GYRIVYVPDAIV--YTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred CCEEEEecccce--eeeCCCCHHHHHHHHHHHHhhh
Confidence 999999976543 8999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.53 E-value=7.4e-14 Score=144.75 Aligned_cols=115 Identities=16% Similarity=0.076 Sum_probs=81.3
Q ss_pred cEEEEeccCCCCCCcCcchhhhHHHHHhcc-------ccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEe
Q 001399 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSA-------VLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQ 596 (1085)
Q Consensus 524 ~lvYvsRekrPg~~hh~KAGalNallrvSa-------v~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ 596 (1085)
++.++.++.. + ....|++|+|.+++.+. .-..+++|+++|+|.. +.|++|+++..+|.|| +++.||
T Consensus 51 ~v~~i~~~~~-~-~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLP-N-ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCC-c-CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 4677766421 1 23359999999998631 0113589999999998 6899999988899998 899999
Q ss_pred cCccccCCCccc--c-cccchhhhhhhhccccccCCCccccccCceehhhhh
Q 001399 597 FPQRFDGIDLHD--R-YANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQAL 645 (1085)
Q Consensus 597 ~PQ~F~nid~~D--r-~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 645 (1085)
.+.++.|.+.+- + +..+...++.+++.++.......+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 1 112333344556666665555557899999999777
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.43 E-value=3.6e-12 Score=130.82 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=89.8
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+|||+| |....+.+|+.|+++.+|| .+.++|+|||...-|.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHHH------------------------
Confidence 57999999998 6667889999999999998 468999999987522211110
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
+ +..+
T Consensus 52 --------------------------~----------~~~~--------------------------------------- 56 (202)
T cd04184 52 --------------------------K----------YAAQ--------------------------------------- 56 (202)
T ss_pred --------------------------H----------HHhc---------------------------------------
Confidence 0 1000
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCcEEE
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCY 594 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~va~ 594 (1085)
.+++.++..+.+. .++.|+|.+++. +.++||+.+|+|.+ +.|++|.+++-.| .+| ++++
T Consensus 57 ------~~~~~~~~~~~~~-----g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREENG-----GISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEcccCC-----CHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 0235555555433 479999999996 67899999999998 6899999999987 777 6777
Q ss_pred EecCccc
Q 001399 595 VQFPQRF 601 (1085)
Q Consensus 595 VQ~PQ~F 601 (1085)
|+.....
T Consensus 117 v~~~~~~ 123 (202)
T cd04184 117 IYSDEDK 123 (202)
T ss_pred EEccHHh
Confidence 7665543
No 40
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.41 E-value=1.1e-12 Score=134.45 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=47.4
Q ss_pred cCcchhhhHHHHHhcc-ccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCC
Q 001399 538 HHKKAGAMNALIRVSA-VLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGID 605 (1085)
Q Consensus 538 hh~KAGalNallrvSa-v~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid 605 (1085)
+..|++|+|.+++... .-.++++|+++|+|.. +.|++|++++..|.+. ...||......+.+
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~ 123 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPD 123 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCc
Confidence 3459999999998631 1257999999999998 5799999999988653 24688877666543
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.37 E-value=1.6e-11 Score=126.27 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEecCccccC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFPQRFDG 603 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~~va~VQ~PQ~F~n 603 (1085)
+.|+.+++..| +++|+|.+++. +.|+||+++|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n~G-----~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKNRG-----LGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 66777766444 89999999996 68999999999998 68999999999885 56 7888887665443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.24 E-value=3.2e-11 Score=125.32 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=51.8
Q ss_pred cCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCC
Q 001399 538 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGID 605 (1085)
Q Consensus 538 hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid 605 (1085)
-+.|..||.++++. . ...++|+++|+|+. .+|++|++.+.-|.|| ++++|..+.++.+.+
T Consensus 15 ~N~Kv~nL~~~~~~-~--a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-G--AKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CChHHHHHHHHHHh-h--CCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 47799999999985 2 78999999999998 5899999999999999 899998877755444
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.23 E-value=2.2e-10 Score=116.04 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=43.4
Q ss_pred cchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHH-hhcCCCCCCcEEEEecCccccC
Q 001399 540 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC-FMMDPAYGKKTCYVQFPQRFDG 603 (1085)
Q Consensus 540 ~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~-ff~Dp~~g~~va~VQ~PQ~F~n 603 (1085)
.+++|+|.+++. .+++||+++|+|-. ..++.+.+.+. +..++ ++.+|.....+.+
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~ 117 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVD 117 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEc
Confidence 389999999996 68999999999998 57899999984 55666 5667766655443
No 44
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.17 E-value=5.7e-10 Score=114.97 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=50.4
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHh-hcCCCCCCcEEEEecCccccC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCF-MMDPAYGKKTCYVQFPQRFDG 603 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~f-f~Dp~~g~~va~VQ~PQ~F~n 603 (1085)
+.++..+++ +.+++|+|.+++. .+++||+++|+|-+ ..|+.|.+.+-. +.+| ..+++.....+.+
T Consensus 56 ~~~~~~~~~-----~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 121 (214)
T cd04196 56 IILIRNGKN-----LGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELVD 121 (214)
T ss_pred EEEEeCCCC-----ccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEEC
Confidence 455555543 3489999999885 78999999999998 589999999998 5555 6777887765543
No 45
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.15 E-value=9.7e-10 Score=121.82 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=83.6
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001399 360 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQ 439 (1085)
Q Consensus 360 vfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~YFs~ 439 (1085)
|+|||+| |++..+.+||.|+++..||.....|+|.|||++.-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7999999 887999999999999999865678999999998744332211
Q ss_pred ccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCC
Q 001399 440 KIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGLDTDG 519 (1085)
Q Consensus 440 k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~d~~~ 519 (1085)
+.. .
T Consensus 51 -------------------------~~~----------~----------------------------------------- 54 (299)
T cd02510 51 -------------------------EYY----------K----------------------------------------- 54 (299)
T ss_pred -------------------------HHH----------h-----------------------------------------
Confidence 000 0
Q ss_pred CCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcC
Q 001399 520 NELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
Q Consensus 520 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~D 585 (1085)
...|++.++..++.- .++.|.|.+++. +.|+||+.+|+|.. +.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKRE-----GLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCCC-----CHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 011347777666533 478999999996 78999999999998 589999999998754
No 46
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.11 E-value=2.9e-09 Score=110.94 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=34.7
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001399 358 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAM 403 (1085)
Q Consensus 358 VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 403 (1085)
|.|+||++| |+. .+..++.|+++..|+ .+.++|.|||+.+
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999998 764 779999999999984 6789999999876
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.09 E-value=3.3e-09 Score=107.18 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=41.2
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
++++.+++ +...|++|+|.+++. ++++||+.+|+|-. +.+++|.+.+-++ ++
T Consensus 55 ~~~~~~~~----~~~~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 55 IKHVWQED----EGFRKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred eEEEEcCC----cchhHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 45555443 223589999999995 78999999999997 6899999999887 44
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.08 E-value=3e-09 Score=104.63 Aligned_cols=50 Identities=26% Similarity=0.207 Sum_probs=41.1
Q ss_pred cchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEecC
Q 001399 540 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFP 598 (1085)
Q Consensus 540 ~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~~va~VQ~P 598 (1085)
.+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+. +| ++++|+..
T Consensus 61 g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 61 GFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred ChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 489999999996 48999999999998 68999999998654 44 67777554
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.02 E-value=9.3e-09 Score=110.57 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=46.7
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFP 598 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~P 598 (1085)
+.++.+++..| |++|+|++++. +.|+||+.+|+|.. .+|++|.+++-.+.++ +..+|...
T Consensus 70 v~~~~~~~n~G-----~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGKLG-----LGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCCCC-----HHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 56666554333 89999999985 68999999999998 6999999999888765 45555543
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.02 E-value=1.3e-10 Score=96.09 Aligned_cols=48 Identities=33% Similarity=0.954 Sum_probs=30.5
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||+||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 77899997 8899999999 999999999999999989999999999996
No 51
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.98 E-value=1e-08 Score=107.73 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.2
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 001399 360 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFE 407 (1085)
Q Consensus 360 vfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~ 407 (1085)
|+||+|| + ...+..|+-|+++++|| +.+.++|.|||+.+-|.+
T Consensus 1 ViIp~yn---~-~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~ 43 (219)
T cd06913 1 IILPVHN---G-EQWLDECLESVLQQDFE-GTLELSVFNDASTDKSAE 43 (219)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHH
Confidence 6899998 5 37999999999999998 468999999999874443
No 52
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.98 E-value=1.2e-07 Score=113.36 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=46.8
Q ss_pred cccchHHHHHHHHHC--CcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhHhh
Q 001399 780 SVTEDILTGFKMHAR--GWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILL 835 (1085)
Q Consensus 780 svTEDi~Tg~rLh~r--GWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQIll 835 (1085)
.+.||=.++..|.++ |||..|+..+.+ +..+|++++.+++||+||..|++--++
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl~ 379 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNLF 379 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhHh
Confidence 578998888777776 899999987776 899999999999999999999985543
No 53
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.97 E-value=6.9e-09 Score=100.87 Aligned_cols=63 Identities=35% Similarity=0.453 Sum_probs=47.8
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHH-HhhcCCCCCCcEEEEecCccc
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAM-CFMMDPAYGKKTCYVQFPQRF 601 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am-~ff~Dp~~g~~va~VQ~PQ~F 601 (1085)
++|+.+++..| |+.|+|.+++. .++++|+++|+|.+ ..+++|.+.+ .++.++ +++.|+..+..
T Consensus 55 ~~~~~~~~~~g-----~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 118 (180)
T cd06423 55 VLVVRDKENGG-----KAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRV 118 (180)
T ss_pred EEEEEecccCC-----chHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEE
Confidence 55666655444 99999999996 58999999999998 5799999994 455666 66677655443
No 54
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.97 E-value=5.2e-09 Score=110.39 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=46.1
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHH---Hhh-cCCCCCCcEEEEecCcc
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAM---CFM-MDPAYGKKTCYVQFPQR 600 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am---~ff-~Dp~~g~~va~VQ~PQ~ 600 (1085)
+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.++. -.+ .+| .++.+ .|+.
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 67777766444 99999999996321 25699999999998 5799999985 333 344 56654 4554
Q ss_pred c
Q 001399 601 F 601 (1085)
Q Consensus 601 F 601 (1085)
.
T Consensus 117 ~ 117 (237)
T cd02526 117 I 117 (237)
T ss_pred E
Confidence 3
No 55
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.94 E-value=1.6e-09 Score=105.65 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=74.8
Q ss_pred cEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccC
Q 001399 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDG 603 (1085)
Q Consensus 524 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~n 603 (1085)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.++ +..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKN--PPDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHC--TTEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhC--CCcEEEEEEEEecCC
Confidence 489999987 33 699999999996 78899999999998 5778999999999874 123444444433333
Q ss_pred CCcccccc--cchhhhhhhhccccccCCCccccccCceehhhhh
Q 001399 604 IDLHDRYA--NRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQAL 645 (1085)
Q Consensus 604 id~~Dr~~--n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 645 (1085)
........ .....++..............++|.++++||++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 22222111 1223444444555666777899999999999988
No 56
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.94 E-value=2.3e-08 Score=104.48 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=47.3
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFP 598 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~P 598 (1085)
+.++..++..| |++|+|.+++. +.++||+.+|+|.. .+|++|...+..+.++ +..+|..+
T Consensus 55 i~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 55566665444 89999999996 67899999999987 6899999999998776 44556554
No 57
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.92 E-value=1.8e-08 Score=104.06 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=47.5
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccc
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRF 601 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F 601 (1085)
+.|+.-++.. ..+.++|.++...- ...++|++.+|+|.+ +.+++|++.+..+.+| +++.| +|.++
T Consensus 53 i~~~~~~~n~-----g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 53 IVYLRLPENL-----GGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred eEEEECcccc-----chhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 5566655422 36888898887532 457899999999998 6899999999988877 56665 34443
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.70 E-value=2.4e-07 Score=96.96 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=46.5
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCcc
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQR 600 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~ 600 (1085)
+.++..++..| |++|+|.+++. +.++||+.+|+|.. ..+++|.+.+..+.++ ...+|..+..
T Consensus 59 i~~i~~~~n~G-----~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 59 IRVLTLPKNRG-----KGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred EEEEEcccCCC-----cHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 35555554333 89999999996 67899999999998 6899999999987654 3344555433
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.67 E-value=3.7e-07 Score=103.78 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=83.5
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCc
Q 001399 354 QLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433 (1085)
Q Consensus 354 ~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~P 433 (1085)
..|.|.|+||+|| ++ ..+..++-|++++.|+ .+.++|.|||+++-|.+.+.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~---------------------- 55 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH---------------------- 55 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH----------------------
Confidence 3578999999998 54 6889999999999997 578999999998743332111
Q ss_pred hhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001399 434 EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSG 513 (1085)
Q Consensus 434 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g 513 (1085)
| ++
T Consensus 56 -----------------------------~----------~~-------------------------------------- 58 (328)
T PRK10073 56 -----------------------------Y----------AE-------------------------------------- 58 (328)
T ss_pred -----------------------------H----------Hh--------------------------------------
Confidence 1 10
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 514 GLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 514 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
+.|++.++..+ ....++|.|.++.. ..|+||+.+|+|-+ ..|++|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01246666532 23489999999996 79999999999998 5799999999887654
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.65 E-value=2.2e-07 Score=94.02 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=51.3
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDG 603 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~n 603 (1085)
+.++..+++.| |++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+..+..+ ...+|+.+..+.+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45666666555 99999999986 67899999999987 5899999999986655 4667777765554
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.63 E-value=8.6e-07 Score=97.34 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=50.1
Q ss_pred cEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccc
Q 001399 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRF 601 (1085)
Q Consensus 524 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F 601 (1085)
.+.|+..++.-| .|||+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+.++..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 477777665444 799999999862 1237899999999998 5799999999888642 22677775 4433
No 62
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.58 E-value=1.3e-06 Score=97.43 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=43.5
Q ss_pred CcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcC
Q 001399 523 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
Q Consensus 523 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~D 585 (1085)
|++.|+..++..| ++.|+|.++.. .+|+||+.+|+|-+ ..|+.|.+.+-++..
T Consensus 60 ~ri~~i~~~~n~G-----~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 60 PRITYIHNDINSG-----ACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCEEEEECCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 3588887765444 89999999985 79999999999998 479999998887653
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.55 E-value=2.9e-06 Score=92.81 Aligned_cols=48 Identities=19% Similarity=0.044 Sum_probs=36.7
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCC-CCCCCcEEEEecCCCchhhHH
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVD-YPVDKVSCYVSDDGSAMLTFE 407 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~d-YP~~kl~~yvsDDG~~~lt~~ 407 (1085)
|.|.|+||||| |. ..+..|+.|++++. .+...+.++|.|||+++-|.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~ 49 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTRE 49 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHH
Confidence 56899999998 64 56899999998642 233468899999999874444
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.44 E-value=4.6e-06 Score=79.14 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=45.2
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHH-hhcCCCCCCcEEEEecC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC-FMMDPAYGKKTCYVQFP 598 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~-ff~Dp~~g~~va~VQ~P 598 (1085)
.+++.+++ +..|++++|.++.. .++++++++|+|.+ ..++++...+- +..++ +..+|+.+
T Consensus 54 ~~~~~~~~-----~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 54 VIRVINEE-----NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred eEEEEecC-----CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 44444443 33499999999986 47999999999998 58899988744 44555 67778776
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.42 E-value=2.2e-06 Score=87.25 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=63.4
Q ss_pred cEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccC
Q 001399 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDG 603 (1085)
Q Consensus 524 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~n 603 (1085)
++.|+..++. ..|++|+|.+++. +.+++|+.+|+|.. ..+++|.+.+.. +++. .++.+.+... .+
T Consensus 56 ~i~~i~~~~n-----~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSRN-----FGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEEG--YDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecCC-----CCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhCC--CcEEEEEecC--Cc
Confidence 3666665542 3499999999996 67899999999998 589999999987 4431 2444433222 11
Q ss_pred CCcccccccchhhhhhhhccccccCCCccccccCceehhhhhc
Q 001399 604 IDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALY 646 (1085)
Q Consensus 604 id~~Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 646 (1085)
.....++.+. .++. ....+.+..-+...|+..++||+++-
T Consensus 121 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 1111111111 1111 11222334445566778899999984
No 66
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.31 E-value=1.6e-05 Score=88.43 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=45.3
Q ss_pred cchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEEecCccccCCCcc
Q 001399 540 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLH 607 (1085)
Q Consensus 540 ~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~VQ~PQ~F~nid~~ 607 (1085)
.+|.|.|.++.. +++++|+.+|+|.+ +.|++|.+++-+.+.=. ....+++-.|..|.+.+..
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhh
Confidence 699999999996 79999999999998 68999999999322100 0134566667666655433
No 67
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.28 E-value=1.8e-05 Score=98.31 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=46.9
Q ss_pred cccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhhcchhH
Q 001399 780 SVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEI 833 (1085)
Q Consensus 780 svTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~G~lQI 833 (1085)
+..||=.+..++..+||+.-|+....+ ...+|+++..++.||+||..|.+-+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~a--~t~~Pe~~~efl~QrrRW~~s~f~~ 600 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASDA--ETEAPESFLEFLNQRRRWLNSIFNA 600 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccccc--cccCcHhHHHHHHHhhhhcccchhH
Confidence 589999999999999999999987666 8999999999999999999994433
No 68
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.26 E-value=3e-05 Score=87.00 Aligned_cols=69 Identities=26% Similarity=0.340 Sum_probs=52.0
Q ss_pred CcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCc-EEEEecCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEecCcc
Q 001399 523 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGA-YLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQFPQR 600 (1085)
Q Consensus 523 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~-~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~~va~VQ~PQ~ 600 (1085)
|.+.|+.-.+.-|| ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .+++|+.-.+
T Consensus 56 ~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 34777777776676 89999888863 35544 9999999976 79999999998774 45 7888877666
Q ss_pred ccC
Q 001399 601 FDG 603 (1085)
Q Consensus 601 F~n 603 (1085)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 543
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.24 E-value=2.4e-05 Score=89.35 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=40.1
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcC
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~D 585 (1085)
+..+..++. ..|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 139 i~vi~~~~N-----~G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 139 IRLLSLLRN-----KGKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred EEEEEcCCC-----CChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 455554432 3499999999996 68999999999997 689998888887754
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.10 E-value=1.9e-05 Score=89.40 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=42.7
Q ss_pred CcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCcEEEEec
Q 001399 539 HKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGKKTCYVQF 597 (1085)
Q Consensus 539 h~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~~va~VQ~ 597 (1085)
..|++|+|.++.. ++|++|+.+|||....+|++|.+.+..+. || ++.+|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 3499999999985 78999999999985358999999998875 77 6777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.57 E-value=0.00058 Score=77.90 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=35.7
Q ss_pred cchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc
Q 001399 540 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM 584 (1085)
Q Consensus 540 ~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~ 584 (1085)
.|++|+|++++. +.|++|+.+|||.. .+|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 489999999986 68999999999998 68999999998774
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.42 E-value=0.0029 Score=72.45 Aligned_cols=159 Identities=28% Similarity=0.405 Sum_probs=109.4
Q ss_pred cCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEE-ecCccccCCCcccccccchhh
Q 001399 538 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV-QFPQRFDGIDLHDRYANRNIV 616 (1085)
Q Consensus 538 hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~V-Q~PQ~F~nid~~Dr~~n~~~v 616 (1085)
-+-|--||=-+.|. ...|+|++.|.|-. -.|+.+....-=||.|+ ++|+| |+|-.++-..
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 34577777777775 68899999999988 58999999888898875 89998 6776655221
Q ss_pred hhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccccCCCCCCCCCCCchhhhhHhhhhcccCCCcc
Q 001399 617 FFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKGCCGPRKKGKGSNKKYIDKKRAMKRTESTVPI 696 (1085)
Q Consensus 617 Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1085)
||.-. .-+|.||. +-|-.|-|- -..++ |.+
T Consensus 216 -f~atl-------e~~~fgTs--h~r~yl~~n---------~~~~~---c~t---------------------------- 245 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTS--HPRIYLSGN---------VLGFN---CST---------------------------- 245 (431)
T ss_pred -chhhh-------hheeeccC--CceEEEccc---------ccccc---ccc----------------------------
Confidence 11111 11556654 233222110 00011 211
Q ss_pred ccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccce
Q 001399 697 FNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGW 776 (1085)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW 776 (1085)
|-|...++++++|.||+... |
T Consensus 246 ------------------------------gms~~mrK~~ld~~ggi~~f----------------------------~- 266 (431)
T KOG2547|consen 246 ------------------------------GMSSMMRKEALDECGGISAF----------------------------G- 266 (431)
T ss_pred ------------------------------cHHHHHHHHHHHHhccHHHH----------------------------H-
Confidence 45667888999999997542 2
Q ss_pred ecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHHHhh
Q 001399 777 IYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWAL 828 (1085)
Q Consensus 777 ~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~RWA~ 828 (1085)
+.+.||+..+-.+..+|||+.+...+.. .-.+-.+...+..|-.||..
T Consensus 267 --~yLaedyFaaksllSRG~ksaist~pal--QnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 267 --GYLAEDYFAAKSLLSRGWKSAISTHPAL--QNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred --HHHHHHHHHHHHHHhhhhhhhhcccchh--hhhhhhHHHHHHHHHHHhhh
Confidence 3899999999999999999999965433 56667888889999999976
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.0054 Score=59.06 Aligned_cols=47 Identities=28% Similarity=0.307 Sum_probs=40.3
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHH
Q 001399 355 LAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFE 407 (1085)
Q Consensus 355 lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~ 407 (1085)
.|.+.|+|||+| |+ .....+|-|++...|+. ..+.|.|||.++-|-+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~ 48 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTE 48 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHH
Confidence 578999999998 65 89999999999999996 5599999999984333
No 74
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.02 E-value=0.0053 Score=65.90 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=35.8
Q ss_pred chhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 541 KAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 541 KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
.+.+.|.++.. ..+++|+.+|+|.+ ..++.+.+...++.++
T Consensus 59 ~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 59 FGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred hHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 78999999985 67899999999998 5899999999888654
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.63 E-value=0.00082 Score=75.31 Aligned_cols=48 Identities=29% Similarity=0.945 Sum_probs=43.7
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 88 (1085)
.|..|=+.+.++ ..-|.+| -|||.|||.||.--|.+=|+.||-|+..|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 699999998776 3459999 99999999999999999999999999999
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.018 Score=65.34 Aligned_cols=60 Identities=22% Similarity=0.520 Sum_probs=51.6
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCC
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPR 96 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgspr 96 (1085)
..+.|.+|-.+..++.+=.+++. +|+-..|+.|.+---+.|...||+|++..++.+=.|.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 35799999999999988888888 9999999999988778899999999999987643333
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.11 E-value=0.23 Score=57.45 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=34.4
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001399 359 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAM 403 (1085)
Q Consensus 359 DvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 403 (1085)
-|+|.||| - |.-+.+|+-|+++..+-.+...+||++||+..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888897 4 68999999999998744567889999999875
No 78
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.86 E-value=0.019 Score=49.36 Aligned_cols=45 Identities=38% Similarity=0.911 Sum_probs=36.1
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCC--Ccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQ--CKTRY 88 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~Cpq--Ckt~Y 88 (1085)
+.+|.+||+.+ .+|++.|.|.+|+=|.=|+||+++- .|-- |++.+
T Consensus 5 ~~~C~~Cg~~~---~~~dDiVvCp~CgapyHR~C~~~~g-----~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKF---KDGDDIVVCPECGAPYHRDCWEKAG-----GCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcc---cCCCCEEECCCCCCcccHHHHhhCC-----ceEeccCCCCc
Confidence 56899999997 3478899999999999999998753 4444 66655
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=93.37 E-value=1.7 Score=55.43 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=71.6
Q ss_pred HhhhcCCcHHHHHHHHhhhCCCCCCCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEe
Q 001399 722 LEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYC 801 (1085)
Q Consensus 722 ~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~ 801 (1085)
.+-+||+-.+|-+--...-||+... . |. =.+.||+..|+....||=++.++
T Consensus 380 ~rlHYGHPD~~n~~f~~TRGGvSKA----------s--------------k~-----lhLsEDIfaG~n~~lRGG~i~h~ 430 (817)
T PF02364_consen 380 VRLHYGHPDVFNRIFMTTRGGVSKA----------S--------------KG-----LHLSEDIFAGMNATLRGGRIKHC 430 (817)
T ss_pred hhccCCCchhhhhhheeccCccchH----------h--------------hc-----ccccHHHHHHHHHHhcCCceeeh
Confidence 4567888887776667788997652 1 11 18999999999999999999998
Q ss_pred CCCCCcccccCCC-CHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchhhhhhc-chhhhhhH
Q 001399 802 MPPRPAFKGSAPI-NLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINT-IVYPLTSI 868 (1085)
Q Consensus 802 ~~~~aaf~GlaP~-tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~-~ly~l~sl 868 (1085)
. =.+ .|..-+ .+..-..=...-+.|+=|..+||.--. .+.+|.+..-+.+..+ .-+++..+
T Consensus 431 e-y~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yr---Lg~~ld~~R~LSfyy~~~Gf~~n~~ 493 (817)
T PF02364_consen 431 E-YIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSREYYR---LGTRLDFFRFLSFYYAHPGFYINNM 493 (817)
T ss_pred h-hhh--cccccccCchhhhhhHhHhcCCccchhhhHHHHH---hhccCCHHHHHHHHhcCccHhHhhH
Confidence 4 333 233221 233333334567899999988875322 2567777766644433 33444443
No 80
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=90.33 E-value=1.6 Score=46.78 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=38.5
Q ss_pred cEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 524 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
++.-..|.+.-|. .-|--+.+.+ ..|+|+++.|||-- -+|+++-+.+....+-
T Consensus 64 ~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 64 NILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred cEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhcc
Confidence 5788888884442 1233344554 78999999999986 7899999988776653
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.26 E-value=0.47 Score=37.08 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=33.2
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 87 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 87 (1085)
.|.||.++. .+.+. ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22322 335899999999987666678899999975
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.80 E-value=0.49 Score=47.78 Aligned_cols=52 Identities=33% Similarity=0.816 Sum_probs=39.1
Q ss_pred ccccccCCccccCCCCCeeeecCC-CCCCcchhhhHhHhh--cCCCCCCCCcccccccC
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNE-CAFPVCRPCYEYERK--DGTQSCPQCKTRYKRHK 92 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~e-C~fpvCr~Cyeyerk--eG~~~CpqCkt~Ykr~k 92 (1085)
--|.||.|. ..-|-|.-=|| |||.||--||--=.| .-.-+||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 469999874 12344665555 599999999976666 45589999999999653
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=82.00 E-value=1.5 Score=37.76 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=34.2
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999864 22 333 378999999999877766 678999998873
No 84
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=80.52 E-value=9.2 Score=43.60 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=28.7
Q ss_pred chhhhHHHHHhccccCCCcEEEEecCCCC--CCchHHHHHHHHhhc
Q 001399 541 KAGAMNALIRVSAVLTNGAYLLNVDCDHY--FNNSKALKEAMCFMM 584 (1085)
Q Consensus 541 KAGalNallrvSav~tng~~Il~lDcD~~--~~~~~~Lr~am~ff~ 584 (1085)
|.||..-.+-. +.|.+++..|||-- .++-..|.++|.=..
T Consensus 145 KGgAvR~g~l~----~rG~~ilfadAdGaTkf~d~ekLe~al~~~~ 186 (323)
T KOG2977|consen 145 KGGAVRKGMLS----SRGQKILFADADGATKFADLEKLEKALNDKA 186 (323)
T ss_pred CCcceehhhHh----ccCceEEEEcCCCCccCCCHHHHHHHHHhhc
Confidence 78887765543 68999999999952 256677777775443
No 85
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.75 E-value=2.1 Score=46.98 Aligned_cols=47 Identities=32% Similarity=0.760 Sum_probs=38.6
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH---hhcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE---RKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye---rkeG~~~CpqCkt~Yk 89 (1085)
+---|.||=|.+ =|+.|-| ||---|.||. |- ....+++||=||..-.
T Consensus 46 ~~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred Cceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 344899998775 5678888 9999999998 76 5688999999998653
No 86
>PHA02862 5L protein; Provisional
Probab=76.49 E-value=1.8 Score=44.53 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=32.3
Q ss_pred CccccccCCccccCCCCCeeeecCCC---CCCcchhhhHhH-hhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNEC---AFPVCRPCYEYE-RKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC---~fpvCr~Cyeye-rkeG~~~CpqCkt~Ykr 90 (1085)
+.+|.||-++- +|..-+| .| -==|=+.|.+-= ...++..|+|||++|.-
T Consensus 2 ~diCWIC~~~~-----~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-----DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-----CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899998862 3445777 44 112335665322 44788999999999963
No 87
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=76.35 E-value=1.4 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=17.1
Q ss_pred chhhhHhHhhcCCCCCCCCccccc
Q 001399 66 CRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 66 Cr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
|.-|- .+...|..-||+|+++-.
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CCCCC-CCCCcccccccccCCccc
Confidence 55554 456788899999998865
No 88
>PHA02929 N1R/p28-like protein; Provisional
Probab=75.98 E-value=3.1 Score=46.29 Aligned_cols=55 Identities=24% Similarity=0.545 Sum_probs=39.7
Q ss_pred CCCccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 34 LNGQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
.....|.||.+.+..++ ....+..-..|+=.-|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 34679999999875443 111233444889999999995 44557889999999875
No 89
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=72.99 E-value=3.7 Score=44.28 Aligned_cols=54 Identities=30% Similarity=0.589 Sum_probs=36.7
Q ss_pred CCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHh---------------hcCCCCCCCCccccc
Q 001399 29 KPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYER---------------KDGTQSCPQCKTRYK 89 (1085)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer---------------keG~~~CpqCkt~Yk 89 (1085)
+-+.....-.|.||-|.+- ++.+ -.|+--.|++|-+.-. +.+...||-|+++..
T Consensus 11 ~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred eeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3344445569999999751 3334 2689999999996321 113468999999884
No 90
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=72.27 E-value=1.8 Score=37.68 Aligned_cols=47 Identities=30% Similarity=0.715 Sum_probs=34.6
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
..|.|-.||..-.. ..+.+ |+=-||+-|+.-||-.| ||=|++|+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34567777765211 12344 59999999999999887 99999999764
No 91
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=72.11 E-value=2.7 Score=34.13 Aligned_cols=43 Identities=30% Similarity=0.651 Sum_probs=33.3
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCK 85 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCk 85 (1085)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999754 67777774 9999999998654444 57999996
No 92
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=68.66 E-value=17 Score=39.65 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=42.6
Q ss_pred EEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCcEEEE
Q 001399 525 LVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCYV 595 (1085)
Q Consensus 525 lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~va~V 595 (1085)
+-.++++.. ..-|-+.|++++. ++++|++.+.=|-.+.+++++.+++-.| .|| ++|+|
T Consensus 31 i~i~~~~~~-----~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 31 IEIDNVRNA-----KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp EEEE-SSS------S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred EEEeccCCC-----cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 445566543 3368899999995 8999999999999999999999999999 898 66555
No 93
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=67.91 E-value=4.2 Score=42.49 Aligned_cols=51 Identities=25% Similarity=0.528 Sum_probs=34.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCC---CcchhhhHhH-hhcCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAF---PVCRPCYEYE-RKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeye-rkeG~~~CpqCkt~Ykr~ 91 (1085)
.+..|.||-++- ++..-+| .|.= -|=+.|.+-= ...++..|++|+++|+-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456999997662 2344688 5632 3456787654 345789999999999744
No 94
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=67.71 E-value=3.5 Score=34.36 Aligned_cols=27 Identities=26% Similarity=0.711 Sum_probs=21.2
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPV 65 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpv 65 (1085)
-+|.-||.++.++.. .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 348899999876
No 95
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=66.55 E-value=1.5 Score=39.34 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.7
Q ss_pred hhhhHhHhhcCCCCCCCCccccccc
Q 001399 67 RPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 67 r~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
+-|+|++..||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5688899999999999999999644
No 96
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=66.45 E-value=4.5 Score=46.66 Aligned_cols=52 Identities=31% Similarity=0.846 Sum_probs=43.1
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
...|.||+++. +.+-..|++| -|+|-+|-+|- --.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~-~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCH-KTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhh-hcccccCCCCCccCCccccC
Confidence 36899999985 4455679999 99999999998 34568999999999999764
No 97
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=65.53 E-value=4.6 Score=31.54 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=18.8
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPV 65 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpv 65 (1085)
+|.-||.++.+.. ++ -+-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6889999998664 33 37999999865
No 98
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=63.04 E-value=6.4 Score=29.35 Aligned_cols=39 Identities=36% Similarity=0.870 Sum_probs=27.5
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCC
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQC 84 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqC 84 (1085)
|.||.+.. ....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~~-----~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-----KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-----CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 77887771 12222 25888899999976666677889987
No 99
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=62.77 E-value=1.6 Score=43.20 Aligned_cols=48 Identities=29% Similarity=0.769 Sum_probs=35.4
Q ss_pred CCCccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCC
Q 001399 34 LNGQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQC 84 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqC 84 (1085)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 35669999999987763 35 88999999999999988555555556555
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=60.25 E-value=6.7 Score=44.54 Aligned_cols=53 Identities=25% Similarity=0.605 Sum_probs=44.0
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
+-|.+|--++-++.+ ++.--|+|+.+.|-.|..-=-.-|...||.|.+.-+..
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358889888888755 66666799999999999777778999999999988754
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=59.91 E-value=5.8 Score=45.27 Aligned_cols=45 Identities=33% Similarity=0.865 Sum_probs=37.4
Q ss_pred CCCCCeeeecCCCCCCc--------ch--hhhHhHhhcCCCCCCCCcccccccCC
Q 001399 49 TAMGDIFVACNECAFPV--------CR--PCYEYERKDGTQSCPQCKTRYKRHKG 93 (1085)
Q Consensus 49 ~~~G~~fvaC~eC~fpv--------Cr--~CyeyerkeG~~~CpqCkt~Ykr~kg 93 (1085)
..+|+..--|..|+||| |+ .|||-+|.|-.+.||.|..|-.|..-
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 44677677899999998 54 69999999999999999999887643
No 102
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.73 E-value=36 Score=40.44 Aligned_cols=48 Identities=19% Similarity=0.079 Sum_probs=36.6
Q ss_pred CCCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCC
Q 001399 351 EPSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGS 401 (1085)
Q Consensus 351 ~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~ 401 (1085)
-|.+||++.|+|--.| |--...++||-|++.-.=|.=--.|.+.||=+
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfS 197 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFS 197 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCC
Confidence 4679999999999998 99999999999998754332223466667643
No 103
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=59.36 E-value=9.4 Score=30.26 Aligned_cols=39 Identities=33% Similarity=0.839 Sum_probs=28.1
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCC
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQC 84 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqC 84 (1085)
|.||-|... ++++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~-----~~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-----DPVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-----SEEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc-----CcCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 778877642 254444 89999999999777666 7999987
No 104
>PRK00420 hypothetical protein; Validated
Probab=56.45 E-value=5.1 Score=39.75 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=22.7
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 56 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 56 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
-.|..|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 45888888863 338999999999998864
No 105
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=55.84 E-value=9.4 Score=43.71 Aligned_cols=40 Identities=30% Similarity=0.714 Sum_probs=30.0
Q ss_pred CCCCCCccccc--cCCccccCCCCCeeeecCC-CCCCcchhhhH
Q 001399 31 LKNLNGQTCQI--CGDNVGLTAMGDIFVACNE-CAFPVCRPCYE 71 (1085)
Q Consensus 31 ~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~e-C~fpvCr~Cye 71 (1085)
+.+..|-.|.- ||...-...| +--|.|.. |+|-.||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 44566788986 9987655442 33588877 99999999998
No 106
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=55.67 E-value=9 Score=30.32 Aligned_cols=40 Identities=28% Similarity=0.688 Sum_probs=30.4
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh-cCCCCCCCC
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK-DGTQSCPQC 84 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-eG~~~CpqC 84 (1085)
|.||.+...... --.+|+=..|+.|..--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888753322 3347899999999987766 788899988
No 107
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=54.33 E-value=12 Score=31.28 Aligned_cols=46 Identities=26% Similarity=0.640 Sum_probs=32.5
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCC-cchhhhHhHhhcCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFP-VCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
..|.||.++.-. -.+. .|+=- +|..|++--.+ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999997321 2344 56778 99999976666 77999999998753
No 109
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=54.19 E-value=14 Score=30.51 Aligned_cols=37 Identities=24% Similarity=0.875 Sum_probs=28.6
Q ss_pred CccccccCCccccCCCCCeeeecCCC-CCCcchhhhHhHhhcC
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYEYERKDG 77 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 77 (1085)
...|..|+..+ .|.-| -|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999854 36666 79999 9999999997655444
No 110
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=53.89 E-value=8.3 Score=33.09 Aligned_cols=28 Identities=29% Similarity=0.927 Sum_probs=17.8
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhH
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYE 71 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye 71 (1085)
.|.|||+++|+... .-+ +=+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999998642 111 1123 6777774
No 111
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=50.02 E-value=12 Score=44.84 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=22.5
Q ss_pred CeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccC
Q 001399 53 DIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHK 92 (1085)
Q Consensus 53 ~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~k 92 (1085)
+.-++|++|+.-+ ..+...||+|++.-.|++
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~~ 249 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVRR 249 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCCC
Confidence 3467899999864 234458999999886653
No 112
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=49.71 E-value=6 Score=45.23 Aligned_cols=36 Identities=33% Similarity=0.876 Sum_probs=27.4
Q ss_pred cccccCCccccCCCCCeeeecCCC-CCCcchhhhHhHhhcC
Q 001399 38 TCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYEYERKDG 77 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~CyeyerkeG 77 (1085)
-|.+|--++ +.-.|+-|+|| +|-.|-||+.--...|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 588887664 24579999999 9999999995444444
No 113
>PHA02926 zinc finger-like protein; Provisional
Probab=49.27 E-value=18 Score=40.03 Aligned_cols=61 Identities=23% Similarity=0.517 Sum_probs=42.6
Q ss_pred CCCccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHhhc-----CCCCCCCCcccccccCCC
Q 001399 34 LNGQTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYERKD-----GTQSCPQCKTRYKRHKGS 94 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerke-----G~~~CpqCkt~Ykr~kgs 94 (1085)
.....|.||=+.|-.. ++..-|--=..|+-.-|..|..-=|+. +...||.|+++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 4457999999997543 222223334468899999999766653 346799999999866444
No 114
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=48.42 E-value=13 Score=32.97 Aligned_cols=33 Identities=33% Similarity=0.757 Sum_probs=24.4
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchh
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRP 68 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~ 68 (1085)
.+|.|..||.....+..+..|+ |..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 5889999999987755565544 87788866554
No 115
>PRK12495 hypothetical protein; Provisional
Probab=47.09 E-value=11 Score=41.50 Aligned_cols=28 Identities=36% Similarity=0.953 Sum_probs=20.4
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 56 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 56 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 43 ~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 43 AHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 34556666553 45899999999999964
No 116
>PRK04023 DNA polymerase II large subunit; Validated
Probab=45.05 E-value=14 Score=48.11 Aligned_cols=45 Identities=20% Similarity=0.654 Sum_probs=32.9
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCC-----cchhhhHhHhhcC-CCCCCCCccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFP-----VCRPCYEYERKDG-TQSCPQCKTRYK 89 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fp-----vCr~CyeyerkeG-~~~CpqCkt~Yk 89 (1085)
.....|.-||... ....|.+|+=. .|..| ++.+ .-.||.|++.=.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4566999999983 45689999843 68888 3433 367999998654
No 117
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=44.74 E-value=14 Score=44.21 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=19.2
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 55 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
-++|++|+..+ . ......||+|++.--|.
T Consensus 215 ~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 215 LRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 56788888865 1 13345789998886443
No 118
>PRK07220 DNA topoisomerase I; Validated
Probab=44.35 E-value=13 Score=47.68 Aligned_cols=48 Identities=19% Similarity=0.582 Sum_probs=32.6
Q ss_pred ccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHhh----cCCCCCCCCcc
Q 001399 37 QTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYERK----DGTQSCPQCKT 86 (1085)
Q Consensus 37 ~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerk----eG~~~CpqCkt 86 (1085)
..|..||.++... ..|..|..|. +||-|+-.+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875442 3466799996 57888755543321 13578999985
No 119
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=44.33 E-value=15 Score=30.45 Aligned_cols=27 Identities=33% Similarity=0.808 Sum_probs=15.7
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPV 65 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpv 65 (1085)
.|+-||..+..+++.. -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5777777766655443 34555555544
No 120
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=43.15 E-value=11 Score=45.03 Aligned_cols=58 Identities=24% Similarity=0.618 Sum_probs=39.4
Q ss_pred CccccccCCccccCCCCCeeeecCCCC-CCcchhhhHhHhhcCCCCCCCCcccccccCC--CCCccCC
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECA-FPVCRPCYEYERKDGTQSCPQCKTRYKRHKG--SPRVEGD 100 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kg--sprv~gd 100 (1085)
...|-.|..+| +|-.+|-|.||. |-+|-+|+.--..-|.+ ||.-+|+-.+. .|.+.+|
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 34899999886 477899999998 99999999433333332 44566764433 4454444
No 121
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.14 E-value=11 Score=29.33 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=13.4
Q ss_pred hHhHhhcCCCCCCCCccccc
Q 001399 70 YEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 70 yeyerkeG~~~CpqCkt~Yk 89 (1085)
|.|+-++....||.|+.+-.
T Consensus 9 y~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 9 YIYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred CEECCCcCCCcCcCCCCcHH
Confidence 34444446789999988644
No 122
>COG4818 Predicted membrane protein [Function unknown]
Probab=41.58 E-value=1.7e+02 Score=28.64 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCe
Q 001399 933 IGGTSAHLFAVFQGLLKVLAGIDTNF 958 (1085)
Q Consensus 933 I~~vs~~LfAv~~aLlk~L~g~~~~F 958 (1085)
|.+..+++++.+.+++-.|.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 34566788888888887776666666
No 123
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.44 E-value=36 Score=42.56 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAM 403 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 403 (1085)
...||++-|+|+-+| |...+..+||-|++..-=|.---.+.|.||....
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999998887655545678899998764
No 124
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=41.43 E-value=1.5e+02 Score=32.27 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc-CCCCCch
Q 001399 987 TTVLIVNLVGIVAGVSWAINSGYQSWGP--LFGKLFFAIWVIAHLYPFLKGLLG-RQNRTPT 1045 (1085)
Q Consensus 987 ~~Llilnligiv~Gi~~~i~~~~~~w~~--l~g~l~~~~Wvv~~L~Pfl~gL~g-R~~~~P~ 1045 (1085)
..|+++.+++++-|+.-+++...+..|- ++...+..+.+++.+|-|+--+.+ +..|.++
T Consensus 100 ssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 100 SSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 4467788888999988888655443332 344556677888888888766655 4457777
No 125
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.16 E-value=33 Score=30.23 Aligned_cols=47 Identities=26% Similarity=0.728 Sum_probs=34.9
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +.+||-|+..+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999964443 355666679987 999997554 4799999977644
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.13 E-value=12 Score=43.21 Aligned_cols=30 Identities=27% Similarity=0.904 Sum_probs=25.3
Q ss_pred CCCcchhhhHhHhhcCC--CCCCCCccccccc
Q 001399 62 AFPVCRPCYEYERKDGT--QSCPQCKTRYKRH 91 (1085)
Q Consensus 62 ~fpvCr~CyeyerkeG~--~~CpqCkt~Ykr~ 91 (1085)
+|.|||.|+---+-+-+ +-||-|.++|+.-
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999977776666 9999999999854
No 127
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=39.71 E-value=25 Score=29.68 Aligned_cols=31 Identities=32% Similarity=1.027 Sum_probs=25.7
Q ss_pred cccccCCccccCCCCCeeeecCCC-CCCcchhhhHh
Q 001399 38 TCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYEY 72 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cyey 72 (1085)
.|..|+.++. +...+.|.+| .|-+|-+||..
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhhC
Confidence 5888987652 4588999999 99999999963
No 128
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=39.37 E-value=22 Score=36.05 Aligned_cols=49 Identities=35% Similarity=0.806 Sum_probs=36.2
Q ss_pred CCCccccccCCcccc--CCCCCeeeecCCCCCCcchhhhHh---HhhcCCCCCCCCcc
Q 001399 34 LNGQTCQICGDNVGL--TAMGDIFVACNECAFPVCRPCYEY---ERKDGTQSCPQCKT 86 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~--~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CpqCkt 86 (1085)
..++.|..||....+ ...| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 457899999999555 4568 999994 6999986 221 22255689999997
No 129
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=38.66 E-value=24 Score=29.21 Aligned_cols=31 Identities=29% Similarity=0.856 Sum_probs=25.2
Q ss_pred cccccCCccccCCCCCeeeecCCCC-CCcchhhhHhH
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECA-FPVCRPCYEYE 73 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~-fpvCr~Cyeye 73 (1085)
.|.+|+..| .| ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i----~g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI----VG-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC----cC-CEEECCCCCCCcCHHHHHCcC
Confidence 588999854 25 789999997 99999999643
No 130
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=38.63 E-value=12 Score=43.89 Aligned_cols=69 Identities=29% Similarity=0.551 Sum_probs=44.7
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcc-hhhhHhHhhcCCCCCCCCcccc---cc--cCCCCCccCCCCcCccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVC-RPCYEYERKDGTQSCPQCKTRY---KR--HKGSPRVEGDDEEDDID 107 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvC-r~CyeyerkeG~~~CpqCkt~Y---kr--~kgsprv~gd~ee~~~d 107 (1085)
+--|..||+-+|+...----.+|-. -.= |==|||--+.|.++||-|+.-- +| .-|||-|+.+-++-++-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~vT 439 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCVT 439 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcccccccccccc
Confidence 4579999999999865444555521 111 1126777899999999998322 32 23678887776555543
No 131
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=36.95 E-value=24 Score=31.42 Aligned_cols=31 Identities=23% Similarity=0.588 Sum_probs=24.7
Q ss_pred CCCccccccCCc---cccCCCCCeeeecCCCCCC
Q 001399 34 LNGQTCQICGDN---VGLTAMGDIFVACNECAFP 64 (1085)
Q Consensus 34 ~~~~~C~iCgd~---vg~~~~G~~fvaC~eC~fp 64 (1085)
..|-+|.-|+.- +...+||...+-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 457789999854 4456899999999999985
No 132
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.65 E-value=8.2 Score=38.07 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=16.7
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 55 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
-+-|+.|+. +++..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 355766664 344444445699999986543
No 133
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=36.03 E-value=12 Score=39.86 Aligned_cols=26 Identities=27% Similarity=0.759 Sum_probs=20.0
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCc-chh
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAFPV-CRP 68 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~fpv-Cr~ 68 (1085)
|+-|... .+.+.-..|+.|-||+ |-.
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~ 81 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTN 81 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccc
Confidence 9999876 2344578899999999 654
No 134
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=35.71 E-value=12 Score=36.92 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=18.1
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001399 55 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 87 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 87 (1085)
-+-|+.|+ ++++..+-.-.||+|+.+
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCC
Confidence 35577776 556666566679999965
No 135
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=35.51 E-value=23 Score=26.81 Aligned_cols=28 Identities=36% Similarity=1.045 Sum_probs=12.0
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhh
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPC 69 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~C 69 (1085)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998863 357889999999998877
No 136
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.50 E-value=15 Score=35.43 Aligned_cols=44 Identities=34% Similarity=0.605 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCccccccCCC-------CCCCCCCCCCCcchhhhhhcCCCC
Q 001399 460 KREYEEFKVRINALVAKAQKMPEEGWTMQDG-------TPWPGNNPRDHPGMIQVFLGRSGG 514 (1085)
Q Consensus 460 kreYee~k~ri~~l~~~~~~~p~~~w~m~dg-------~~w~g~~~~dhp~iiqv~~~~~g~ 514 (1085)
|-||+|+|+. . ..+|+|+|= +.|.-.+--.||.+.+-|--.+||
T Consensus 20 k~eyqel~~~-------~----~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKEK-------D----FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHHh-------h----hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 4599998852 1 268999875 345444456788888887666664
No 137
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=35.13 E-value=39 Score=27.59 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=31.6
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcc
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 86 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt 86 (1085)
|.+|-.+. +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898887 33333333 2 689999999996554 67789999985
No 138
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.46 E-value=14 Score=31.71 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.1
Q ss_pred CCCCCccc
Q 001399 80 SCPQCKTR 87 (1085)
Q Consensus 80 ~CpqCkt~ 87 (1085)
.||.|+.+
T Consensus 36 ~CP~C~a~ 43 (50)
T cd00730 36 VCPVCGAG 43 (50)
T ss_pred CCCCCCCc
Confidence 55555543
No 139
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.42 E-value=30 Score=41.43 Aligned_cols=52 Identities=23% Similarity=0.579 Sum_probs=36.6
Q ss_pred CCCCCCC-ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 30 PLKNLNG-QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 30 ~~~~~~~-~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
.+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 19 ~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred cccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 3555444 48999998651 2333 368999999999755433 458999999875
No 140
>PRK14973 DNA topoisomerase I; Provisional
Probab=34.38 E-value=29 Score=45.80 Aligned_cols=48 Identities=21% Similarity=0.640 Sum_probs=31.8
Q ss_pred ccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHhh-cC-----CCCCCCCccc
Q 001399 37 QTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYERK-DG-----TQSCPQCKTR 87 (1085)
Q Consensus 37 ~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyerk-eG-----~~~CpqCkt~ 87 (1085)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 5799999876432 3454 99996 66888865544322 12 3689999973
No 141
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=33.97 E-value=21 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=20.3
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPV 65 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpv 65 (1085)
.-.|..||.+|.++.. ..-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~~-~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQE-TRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhhc-cCceeCCCCCcEE
Confidence 3479999999854432 2357888888865
No 142
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=33.87 E-value=47 Score=38.46 Aligned_cols=43 Identities=23% Similarity=0.565 Sum_probs=28.2
Q ss_pred CCccccccCCcc--c--c---CCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcc
Q 001399 35 NGQTCQICGDNV--G--L---TAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 86 (1085)
Q Consensus 35 ~~~~C~iCgd~v--g--~---~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt 86 (1085)
+.+.|.+||..= + . +++|.-+.-|.-|+. |..-.+-.||.|+.
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCC
Confidence 445999999881 1 1 258999999987764 33333455666665
No 143
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=34 Score=43.44 Aligned_cols=59 Identities=29% Similarity=0.833 Sum_probs=41.5
Q ss_pred CCCccccccCCccccCCCCC----eeeecCCCC--------------------CCcchhhhH-hH----hh--cCCCCCC
Q 001399 34 LNGQTCQICGDNVGLTAMGD----IFVACNECA--------------------FPVCRPCYE-YE----RK--DGTQSCP 82 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~----~fvaC~eC~--------------------fpvCr~Cye-ye----rk--eG~~~Cp 82 (1085)
..-.+|.-|=.++ .|++-. +|..|-.|| ||.|-.|-+ |+ |+ --.-+||
T Consensus 99 pD~a~C~~Cl~Ei-~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 99 PDAATCEDCLEEI-FDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CchhhhHHHHHHh-cCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 4556899999987 444332 699999994 999999974 33 33 2236999
Q ss_pred CCccccc--ccCC
Q 001399 83 QCKTRYK--RHKG 93 (1085)
Q Consensus 83 qCkt~Yk--r~kg 93 (1085)
.|+-.|. +++|
T Consensus 178 ~CGP~~~l~~~~g 190 (750)
T COG0068 178 KCGPHLFLVNHDG 190 (750)
T ss_pred ccCCCeEEEcCCC
Confidence 9997554 5543
No 144
>PRK11827 hypothetical protein; Provisional
Probab=33.13 E-value=30 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=19.6
Q ss_pred CcchhhhHhHhhcCCCCCCCCcccccccCCCCC
Q 001399 64 PVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPR 96 (1085)
Q Consensus 64 pvCr~CyeyerkeG~~~CpqCkt~Ykr~kgspr 96 (1085)
|+|+-=.+|...+..-+|..|+-.|--..|=|-
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPV 44 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV 44 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCccc
Confidence 455444445433344678888888876655553
No 145
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.88 E-value=6.5 Score=45.70 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=37.9
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 88 (1085)
+|.||-+=+-.+- --.||+-..|+.|.--.-+.||..||-|++.-
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 8999988765542 23489999999999999999999999999875
No 146
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.35 E-value=17 Score=36.12 Aligned_cols=29 Identities=14% Similarity=0.509 Sum_probs=16.3
Q ss_pred eeecCCCCCCcchhhhHhHhhcCC-CCCCCCcccccc
Q 001399 55 FVACNECAFPVCRPCYEYERKDGT-QSCPQCKTRYKR 90 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~-~~CpqCkt~Ykr 90 (1085)
..-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 71 ~~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 71 ELECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 34466665 334443322 359999987544
No 147
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=32.29 E-value=40 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.555 Sum_probs=26.9
Q ss_pred cccccCCccccCCCCCeeeecCCCC-CCcchhhhHhHhhcCC
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECA-FPVCRPCYEYERKDGT 78 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~ 78 (1085)
.|.+||-|+. .+..-|-.++ +-+|.+||+-.|--++
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f~~~ 38 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRFPSN 38 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCCCCC
Confidence 6999999973 2666677776 9999999965554433
No 148
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=32.05 E-value=5.4e+02 Score=29.59 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=37.1
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEE-EEecCCC-chhhHHHHHHH
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSC-YVSDDGS-AMLTFEALSET 412 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~-yvsDDG~-~~lt~~al~Ea 412 (1085)
..+-++|=|+.|-.| +++ ..-.=.-.+++++||++++++ .+..|.. -.-|.+.|.++
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~ 79 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAA 79 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHH
Confidence 356678988888887 454 355556677888999998777 3333332 24455555543
No 149
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.74 E-value=36 Score=28.23 Aligned_cols=45 Identities=24% Similarity=0.684 Sum_probs=32.4
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh-----cCCCCCCCCcc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK-----DGTQSCPQCKT 86 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-----eG~~~CpqCkt 86 (1085)
+|++||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 566778999999987766777765432 34567777753
No 150
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.60 E-value=14 Score=32.64 Aligned_cols=13 Identities=38% Similarity=0.984 Sum_probs=7.7
Q ss_pred CCCCCCCcccccc
Q 001399 78 TQSCPQCKTRYKR 90 (1085)
Q Consensus 78 ~~~CpqCkt~Ykr 90 (1085)
.-+||+||+-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3456666666654
No 151
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=31.44 E-value=26 Score=30.95 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=14.9
Q ss_pred hhcCCCCCCCCccccc------ccCCCCCccCCCCcCccc
Q 001399 74 RKDGTQSCPQCKTRYK------RHKGSPRVEGDDEEDDID 107 (1085)
Q Consensus 74 rkeG~~~CpqCkt~Yk------r~kgsprv~gd~ee~~~d 107 (1085)
..+.|..-|=|-+|=| -..|+=||+|.+++++.+
T Consensus 14 ~~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 14 WSPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp -SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred ccCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 3456666666666655 456777888876544433
No 152
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=31.34 E-value=38 Score=35.89 Aligned_cols=37 Identities=22% Similarity=0.573 Sum_probs=22.0
Q ss_pred ccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCC
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQ 79 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~ 79 (1085)
|.|||-.|-.. - -|.-.-=-.-||+.||.|.++...+
T Consensus 6 CEiCG~~i~~~---~-~v~vegsel~VC~~Cak~G~~~~~~ 42 (165)
T COG1813 6 CELCGREIDKP---I-KVKVEGAELTVCDDCAKFGTAAKTA 42 (165)
T ss_pred eeccccccCCC---e-eEEeecceeehhHHHHHhccCcccc
Confidence 99999986421 0 1222122356889999888554433
No 153
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=31.23 E-value=64 Score=28.81 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=35.3
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCC-CCCCCCcc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGT-QSCPQCKT 86 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~-~~CpqCkt 86 (1085)
..+|.-||-.|.-.+.+- -.+|.+|+=-+-+=|. .-||-++ -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~~-~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAV-KFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCccC-EeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 458999999986665564 4579999877444465 5577776 57999973
No 154
>PRK07219 DNA topoisomerase I; Validated
Probab=31.16 E-value=29 Score=45.25 Aligned_cols=53 Identities=25% Similarity=0.682 Sum_probs=31.1
Q ss_pred CccccccCCccccC--CCCCeeeecCCCCCCcchhhhHhHh----hcCCCCCCCCccccccc
Q 001399 36 GQTCQICGDNVGLT--AMGDIFVACNECAFPVCRPCYEYER----KDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~--~~G~~fvaC~eC~fpvCr~Cyeyer----keG~~~CpqCkt~Ykr~ 91 (1085)
...|..||..+.+. ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664432 3455 88885 5777753332211 12347899998866543
No 155
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=31.06 E-value=25 Score=44.00 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=24.4
Q ss_pred CCCCccccccCCccccCCCCCe-----------eee-----cCCCCCCcchhhhHh
Q 001399 33 NLNGQTCQICGDNVGLTAMGDI-----------FVA-----CNECAFPVCRPCYEY 72 (1085)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~-----------fva-----C~eC~fpvCr~Cyey 72 (1085)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..|+..
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~ 250 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALK 250 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHH
Confidence 3455689999999444444222 222 012368999999954
No 156
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.03 E-value=32 Score=37.68 Aligned_cols=39 Identities=26% Similarity=0.615 Sum_probs=25.9
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 87 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 87 (1085)
...|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998874321 23788887654333 3589999865
No 157
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=30.88 E-value=24 Score=36.63 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=40.3
Q ss_pred ccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 45 NVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 45 ~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
-||+..+|-.-+-|.-|+|.-|..=.|-++..-+-.=|+|--+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478888888889999999999999998888888899999999995
No 158
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=30.79 E-value=1.6e+02 Score=35.12 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=29.4
Q ss_pred cCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHH
Q 001399 538 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC 581 (1085)
Q Consensus 538 hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ 581 (1085)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+| .++.|-+-
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYvk 182 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYVK 182 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHHH
Confidence 4558888875443322 45889999999999985 56777554
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.67 E-value=24 Score=44.83 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=5.6
Q ss_pred CCCCCCCccc
Q 001399 78 TQSCPQCKTR 87 (1085)
Q Consensus 78 ~~~CpqCkt~ 87 (1085)
...||.|+..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 3566666554
No 160
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=29.60 E-value=39 Score=38.31 Aligned_cols=62 Identities=26% Similarity=0.568 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchh-----hhHhH---hhcC-----CCCCCCCcccccc
Q 001399 24 SDSGPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRP-----CYEYE---RKDG-----TQSCPQCKTRYKR 90 (1085)
Q Consensus 24 ~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~-----Cyeye---rkeG-----~~~CpqCkt~Ykr 90 (1085)
+|+-+++-...-+..|.+|+++|. + -+.++|| |-+|-|+. |.--| -..| .+.||-|++.+.-
T Consensus 170 eDal~~~~~~~~~~~celc~~ei~--e-~~~~~a~--c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 170 EDALPQPRTGALNVECELCEKEIL--E-TDWSRAT--CPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred hhcccCccccccchhhHHHHHHhc--c-ccceecc--CCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 344334444455679999999986 2 3346777 78888873 65433 2222 2579999998863
No 161
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.59 E-value=23 Score=35.08 Aligned_cols=28 Identities=21% Similarity=0.590 Sum_probs=17.2
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 56 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 56 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.-|+.|+ ++++..+-...||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4466665 344444445679999976533
No 162
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=33 Score=39.00 Aligned_cols=22 Identities=32% Similarity=0.930 Sum_probs=17.4
Q ss_pred CCCCccccccCCccccCCCCCeeeecCCCC
Q 001399 33 NLNGQTCQICGDNVGLTAMGDIFVACNECA 62 (1085)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~ 62 (1085)
...+..|.-||+- -|++|-.|.
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 5567899999954 699998884
No 163
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=29.36 E-value=21 Score=35.42 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=16.3
Q ss_pred eecCCCCCCcchhhhHhHhhcCC-CCCCCCccccc
Q 001399 56 VACNECAFPVCRPCYEYERKDGT-QSCPQCKTRYK 89 (1085)
Q Consensus 56 vaC~eC~fpvCr~CyeyerkeG~-~~CpqCkt~Yk 89 (1085)
.-|+.|+ ++++..+-. -.||+|+.+-.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCc
Confidence 4476666 244444443 56999997643
No 164
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.24 E-value=28 Score=42.86 Aligned_cols=50 Identities=26% Similarity=0.608 Sum_probs=31.5
Q ss_pred cCCCCC-eeeecCCCCCC-cchhhh---HhHhhcCCCCCCCCcccccccCCCCCc
Q 001399 48 LTAMGD-IFVACNECAFP-VCRPCY---EYERKDGTQSCPQCKTRYKRHKGSPRV 97 (1085)
Q Consensus 48 ~~~~G~-~fvaC~eC~fp-vCr~Cy---eyerkeG~~~CpqCkt~Ykr~kgsprv 97 (1085)
++-.|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCC
Confidence 345565 47788888765 366663 344556666677777777666666654
No 165
>PRK04296 thymidine kinase; Provisional
Probab=28.89 E-value=28 Score=36.92 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=23.9
Q ss_pred ccccccCCccccC----------CCCCe-eeecCCCCCCcchhhhH
Q 001399 37 QTCQICGDNVGLT----------AMGDI-FVACNECAFPVCRPCYE 71 (1085)
Q Consensus 37 ~~C~iCgd~vg~~----------~~G~~-fvaC~eC~fpvCr~Cye 71 (1085)
.+|..||.+--.| .+|+. .+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 4899999874332 23444 35555666899999994
No 166
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=28.49 E-value=65 Score=37.28 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.0
Q ss_pred CCCcEEEEecCCCCCCchHHHHHHHHhhcCCCCCCcEEEE
Q 001399 556 TNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYV 595 (1085)
Q Consensus 556 tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp~~g~~va~V 595 (1085)
+..+||+++|.|++ |.+++-+....+..--....+.+||
T Consensus 126 a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 126 ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 57899999999998 7777666666655322233466666
No 167
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.41 E-value=1.1e+03 Score=28.10 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=13.3
Q ss_pred hcCCccccccccchhhhh
Q 001399 916 WSGVGIEDWWRNEQFWVI 933 (1085)
Q Consensus 916 wsG~s~~~wWr~eq~W~I 933 (1085)
-.|-.++.||....|+.+
T Consensus 174 ~NGS~Ik~WW~~HHy~s~ 191 (330)
T PF07851_consen 174 VNGSRIKGWWVFHHYIST 191 (330)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 456778899988887643
No 168
>PRK12438 hypothetical protein; Provisional
Probab=28.20 E-value=7.9e+02 Score=33.20 Aligned_cols=46 Identities=22% Similarity=0.386 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhh
Q 001399 1017 GKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLW 1062 (1085)
Q Consensus 1017 g~l~~~~Wvv~~L~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~ 1062 (1085)
++.++++-.++...-|+.+++.|+-|.|.+.+..-++.++++..+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566667777888999887766555555554444
No 169
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=27.64 E-value=35 Score=37.28 Aligned_cols=26 Identities=38% Similarity=0.889 Sum_probs=19.7
Q ss_pred CccccccCCccccC----CCCCeeeecCCCCCCcchhhhH
Q 001399 36 GQTCQICGDNVGLT----AMGDIFVACNECAFPVCRPCYE 71 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~----~~G~~fvaC~eC~fpvCr~Cye 71 (1085)
.-+|..||+-++-. .||+ |||++||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 36999999987643 3666 68999985
No 170
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.21 E-value=25 Score=31.49 Aligned_cols=17 Identities=41% Similarity=0.993 Sum_probs=14.8
Q ss_pred hhcCCCCCCCCcccccc
Q 001399 74 RKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 74 rkeG~~~CpqCkt~Ykr 90 (1085)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 57899999999999973
No 171
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=27.03 E-value=38 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=17.6
Q ss_pred ccccCCccccCCCCCeeeecCCCCC
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAF 63 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~f 63 (1085)
|.+||.......||- .-|.+|+-
T Consensus 11 C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 11 CPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred CCCCCCeEeEccCCE--EEhhhCce
Confidence 999999987788885 44777764
No 172
>PF15050 SCIMP: SCIMP protein
Probab=27.01 E-value=45 Score=33.63 Aligned_cols=40 Identities=20% Similarity=0.570 Sum_probs=26.3
Q ss_pred cccccchhhhhhhHHHHHHHH-----HHHHHHHHcCCCCCeEeccC
Q 001399 923 DWWRNEQFWVIGGTSAHLFAV-----FQGLLKVLAGIDTNFTVTSK 963 (1085)
Q Consensus 923 ~wWr~eq~W~I~~vs~~LfAv-----~~aLlk~L~g~~~~F~VTpK 963 (1085)
+|||+ -||+|-++...+..+ +..+.+.+.++..+|+++.-
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 58995 799987775444332 23344556667788988864
No 173
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=26.74 E-value=2e+02 Score=34.09 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=29.2
Q ss_pred cCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHH
Q 001399 538 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMC 581 (1085)
Q Consensus 538 hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ 581 (1085)
.+.|+-.|=-.+-... ..+.+||-.+|||.|+| .++.|-+-
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYvk 181 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYVK 181 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHHH
Confidence 4558888875443322 35889999999999985 56777554
No 174
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.66 E-value=20 Score=26.43 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=10.3
Q ss_pred HhhcCCCCCCCCccc
Q 001399 73 ERKDGTQSCPQCKTR 87 (1085)
Q Consensus 73 erkeG~~~CpqCkt~ 87 (1085)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 346667778888765
No 175
>PRK08359 transcription factor; Validated
Probab=26.34 E-value=26 Score=37.55 Aligned_cols=30 Identities=37% Similarity=0.885 Sum_probs=19.4
Q ss_pred ccccccCCccccC-----CCCCeeeecCCCCCCcchhhh-HhHh
Q 001399 37 QTCQICGDNVGLT-----AMGDIFVACNECAFPVCRPCY-EYER 74 (1085)
Q Consensus 37 ~~C~iCgd~vg~~-----~~G~~fvaC~eC~fpvCr~Cy-eyer 74 (1085)
..|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 3599999997322 24433 45778888 6644
No 176
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=26.24 E-value=28 Score=26.95 Aligned_cols=24 Identities=33% Similarity=1.000 Sum_probs=11.6
Q ss_pred cccccCCccccCCCCCeeeecCCCCC
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAF 63 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~f 63 (1085)
.|..|+.+-.. +||..|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 57788877655 6777766 778875
No 177
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.12 E-value=21 Score=25.80 Aligned_cols=13 Identities=38% Similarity=0.951 Sum_probs=6.5
Q ss_pred hcCCCCCCCCccc
Q 001399 75 KDGTQSCPQCKTR 87 (1085)
Q Consensus 75 keG~~~CpqCkt~ 87 (1085)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 4444555555543
No 178
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=26.10 E-value=35 Score=35.39 Aligned_cols=43 Identities=35% Similarity=0.838 Sum_probs=26.1
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH-hhcCCCCCCCCcc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE-RKDGTQSCPQCKT 86 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CpqCkt 86 (1085)
.+..|..||+ .-||+|.+|.= -|+--.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4567999984 46999998842 222212111 1234578999986
No 179
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.39 E-value=44 Score=43.81 Aligned_cols=55 Identities=22% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCccccccCCc--ccc-CCCCCeeeecCCCCCCcchhhhHhHh-----------hcCCCCCCCCcccccccC
Q 001399 35 NGQTCQICGDN--VGL-TAMGDIFVACNECAFPVCRPCYEYER-----------KDGTQSCPQCKTRYKRHK 92 (1085)
Q Consensus 35 ~~~~C~iCgd~--vg~-~~~G~~fvaC~eC~fpvCr~Cyeyer-----------keG~~~CpqCkt~Ykr~k 92 (1085)
....|..||.. +.. .-.| .|++|. +||-|+-=....+ ......||.|+......+
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~ 659 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRH 659 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEec
Confidence 45689999864 222 2345 599994 5777742111111 112468999987665443
No 180
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.33 E-value=39 Score=45.46 Aligned_cols=48 Identities=23% Similarity=0.632 Sum_probs=30.9
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCc-----chhhhHhHh--hcCCCCCCCCccccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPV-----CRPCYEYER--KDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpv-----Cr~Cyeyer--keG~~~CpqCkt~Ykr~ 91 (1085)
..|.-||..+-. .-|.+|+-+. |..|=-.-- ..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886421 2688888664 777753211 12356899999877644
No 181
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=25.13 E-value=23 Score=37.58 Aligned_cols=34 Identities=35% Similarity=0.890 Sum_probs=21.4
Q ss_pred ccccccCCcccc----CCCCC-eeeecCCCCCCcchhhh
Q 001399 37 QTCQICGDNVGL----TAMGD-IFVACNECAFPVCRPCY 70 (1085)
Q Consensus 37 ~~C~iCgd~vg~----~~~G~-~fvaC~eC~fpvCr~Cy 70 (1085)
.+|..||.+--. ..+|+ ..|--+|--.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988333 23444 35555677889999998
No 182
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=25.05 E-value=50 Score=28.86 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=9.9
Q ss_pred cccccCCccccC
Q 001399 38 TCQICGDNVGLT 49 (1085)
Q Consensus 38 ~C~iCgd~vg~~ 49 (1085)
.|..||.+|.+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 788999988775
No 183
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=24.93 E-value=47 Score=37.58 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=27.1
Q ss_pred HhHHhhhcCCCCCCCCCCceEEEEecCCCCCCChHHHHHHH
Q 001399 339 LDRLALRYDREGEPSQLAPVDIFVSTVDPLKEPPLVTANTV 379 (1085)
Q Consensus 339 ~drL~~r~e~~~~~~~lp~VDvfV~T~dp~kEp~~v~~nTv 379 (1085)
++.+++-++.=.....+|.|=|||+ +||+..++.++++-+
T Consensus 159 LeKm~~~Vd~i~~~~~~~~~PlFIs-vDPeRD~~~~~~eY~ 198 (280)
T KOG2792|consen 159 LEKMSAVVDEIEAKPGLPPVPLFIS-VDPERDSVEVVAEYV 198 (280)
T ss_pred HHHHHHHHHHHhccCCCCccceEEE-eCcccCCHHHHHHHH
Confidence 5555554432223456788878886 799999999888743
No 184
>PTZ00293 thymidine kinase; Provisional
Probab=24.09 E-value=37 Score=37.32 Aligned_cols=35 Identities=20% Similarity=0.699 Sum_probs=22.4
Q ss_pred ccccccCCccccC----CCCCe-eeecCCCCCCcchhhhH
Q 001399 37 QTCQICGDNVGLT----AMGDI-FVACNECAFPVCRPCYE 71 (1085)
Q Consensus 37 ~~C~iCgd~vg~~----~~G~~-fvaC~eC~fpvCr~Cye 71 (1085)
.+|..||.+.-.| ++|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5899999884432 33443 22223444789999995
No 185
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.96 E-value=66 Score=23.85 Aligned_cols=24 Identities=29% Similarity=0.826 Sum_probs=13.1
Q ss_pred ccccCCccccCCCCCeeeecCCCCC
Q 001399 39 CQICGDNVGLTAMGDIFVACNECAF 63 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC~f 63 (1085)
|..||-.|--.+.|..| .|.+|+|
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55566665433444444 3767765
No 186
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=23.91 E-value=52 Score=30.26 Aligned_cols=31 Identities=26% Similarity=0.735 Sum_probs=24.4
Q ss_pred CCCccccccCC--cccc-CCCCCeeeecCCCCCC
Q 001399 34 LNGQTCQICGD--NVGL-TAMGDIFVACNECAFP 64 (1085)
Q Consensus 34 ~~~~~C~iCgd--~vg~-~~~G~~fvaC~eC~fp 64 (1085)
..|-+|.-|+. .|.+ .+||...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 45779999984 4544 6889999999999984
No 187
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=23.85 E-value=75 Score=28.45 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=33.8
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCC-CCCCCCc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGT-QSCPQCK 85 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~-~~CpqCk 85 (1085)
..+|.-||-.|-..+.+-.| +|..|+=-+-.-|- --||-|| -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 34899999999887777665 69999943333333 2367776 5799886
No 188
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=23.12 E-value=54 Score=39.32 Aligned_cols=35 Identities=23% Similarity=0.566 Sum_probs=23.2
Q ss_pred eeeecCCCCCCcchhhhHhHhh-cCCCCCCCCcccccccC
Q 001399 54 IFVACNECAFPVCRPCYEYERK-DGTQSCPQCKTRYKRHK 92 (1085)
Q Consensus 54 ~fvaC~eC~fpvCr~Cyeyerk-eG~~~CpqCkt~Ykr~k 92 (1085)
..++|+||+.-+=+| ..+ .....||+|++.-.|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 368899998764333 112 23357999999987653
No 189
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=23.04 E-value=38 Score=30.13 Aligned_cols=29 Identities=31% Similarity=0.751 Sum_probs=20.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPV 65 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpv 65 (1085)
---+|.-||.+-.+. .|| .+-|.||||.|
T Consensus 19 miYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 19 MIYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEEecccccccccc-CCC-cEehhhcchHH
Confidence 345899999885444 354 46899999976
No 190
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=22.74 E-value=62 Score=25.79 Aligned_cols=31 Identities=19% Similarity=0.578 Sum_probs=23.5
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE 73 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye 73 (1085)
...|..|++.. .-.-|.+|.-++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45788887652 45779999999999999654
No 191
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=43 Score=35.99 Aligned_cols=44 Identities=30% Similarity=0.700 Sum_probs=35.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKT 86 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt 86 (1085)
.--.|.||-+..-.. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 345899999886333 5667899999999988877 8899999993
No 192
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.62 E-value=45 Score=28.24 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=30.1
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD 76 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke 76 (1085)
.+.|.+|+...+...+. .-|.-|+--+|..|..+....
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeeec
Confidence 46899999988875432 569999999999999887663
No 193
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=34 Score=30.53 Aligned_cols=42 Identities=33% Similarity=0.777 Sum_probs=32.9
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCC
Q 001399 55 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDD 101 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ 101 (1085)
.+|| |+||-=..|-+..+.-.||+||.-|.-..|-|..--||
T Consensus 8 iLaC-----P~~kg~L~~~~~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 8 ILAC-----PVCKGPLVYDEEKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred eeec-----cCcCCcceEeccCCEEEecccCceeecccCccccCchh
Confidence 5788 44444477777777899999999999888888776665
No 194
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=22.57 E-value=39 Score=40.88 Aligned_cols=33 Identities=39% Similarity=0.937 Sum_probs=21.7
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
.+.+.|.+|||+ .||-.= |-.-|-+||-=|||.
T Consensus 267 ~~e~~CAVCgDn----------AaCqHY---------------GvRTCEGCKGFFKRT 299 (605)
T KOG4217|consen 267 SAEGLCAVCGDN----------AACQHY---------------GVRTCEGCKGFFKRT 299 (605)
T ss_pred CccceeeecCCh----------HHhhhc---------------CccccccchHHHHHH
Confidence 346799999998 566333 445566666666653
No 195
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=22.48 E-value=68 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.825 Sum_probs=23.2
Q ss_pred cccccCCccccCCCCCeeeecCCC-CCCcchhhhH
Q 001399 38 TCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYE 71 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cye 71 (1085)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588898843 35 46789999 8999999995
No 196
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.37 E-value=1.1e+02 Score=26.03 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=28.6
Q ss_pred cccccCCccccCCCCCeeeecCCCCC---CcchhhhHhHhh-cCCCCCCCCc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAF---PVCRPCYEYERK-DGTQSCPQCK 85 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeyerk-eG~~~CpqCk 85 (1085)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899988 334444457788 4542 244577765544 4467899996
No 197
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=22.34 E-value=42 Score=40.44 Aligned_cols=34 Identities=24% Similarity=0.602 Sum_probs=22.9
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccC
Q 001399 56 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHK 92 (1085)
Q Consensus 56 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~k 92 (1085)
++|++|+--+..|=- +..+...||+|+++-.|++
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~~ 44 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVRW 44 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCCC
Confidence 789999887654321 1223457999999987653
No 198
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=22.32 E-value=2e+03 Score=30.75 Aligned_cols=81 Identities=25% Similarity=0.271 Sum_probs=49.7
Q ss_pred cccchHHHHHHHHHCCcEEEEeCCCCCcc----cccCCCCHHHHHHHHHHHhhcchhHhhhhcCccccccCCCCCccchh
Q 001399 780 SVTEDILTGFKMHARGWISIYCMPPRPAF----KGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERL 855 (1085)
Q Consensus 780 svTEDi~Tg~rLh~rGWrsvY~~~~~aaf----~GlaP~tl~~~lkQR~RWA~G~lQIllsr~~Pl~~g~~~~L~l~QRL 855 (1085)
.+.||+..|+....||=++.++.- .++= .|+..++.= -..=+.|+=|-.+||.- |.++.++.+..-+
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~EY-iQvGKGRDvGlnqI~~F-----eaKia~G~GEQ~LSRd~---YrLG~~ldffRmL 1243 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHHEY-IQVGKGRDVGLNQISNF-----EAKIANGNGEQTLSRDY---YRLGTQLDFFRML 1243 (1679)
T ss_pred ccchHhhhhhhHHhhCCCccccee-eecccccccCcchhhhh-----hhhhcCCCcchhhhHHH---HHhcccccHHHHH
Confidence 789999999999999988887731 2210 233332222 23458899988888752 2235567776555
Q ss_pred h-hhhcchhhhhhHH
Q 001399 856 A-YINTIVYPLTSIP 869 (1085)
Q Consensus 856 ~-Yl~~~ly~l~sl~ 869 (1085)
. |+.+.-+++.++.
T Consensus 1244 Sfyftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1244 SFYFTTVGFYFNNMF 1258 (1679)
T ss_pred HHHhccccHHHHhHH
Confidence 4 3344445555544
No 199
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.21 E-value=32 Score=35.14 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=8.7
Q ss_pred cCCCCCCCCccc
Q 001399 76 DGTQSCPQCKTR 87 (1085)
Q Consensus 76 eG~~~CpqCkt~ 87 (1085)
+..-.||+|+.+
T Consensus 105 ~~~~~CP~Cgs~ 116 (135)
T PRK03824 105 HAFLKCPKCGSR 116 (135)
T ss_pred ccCcCCcCCCCC
Confidence 344569999976
No 200
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=22.21 E-value=52 Score=39.07 Aligned_cols=48 Identities=29% Similarity=0.659 Sum_probs=33.4
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHh-hcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYER-KDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer-keG~~~CpqCkt~Yk 89 (1085)
.-+.|.||.++= - -|-=.-||--.|-+|.--=. .++.|-||=|+-.-|
T Consensus 368 TFeLCKICaend-----K--dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 368 TFELCKICAEND-----K--DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred hHHHHHHhhccC-----C--CcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 345788998751 1 13344689999999986444 465799999987654
No 201
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.15 E-value=38 Score=27.07 Aligned_cols=11 Identities=45% Similarity=1.431 Sum_probs=9.6
Q ss_pred CCCCCcccccc
Q 001399 80 SCPQCKTRYKR 90 (1085)
Q Consensus 80 ~CpqCkt~Ykr 90 (1085)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999964
No 202
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=22.06 E-value=42 Score=34.00 Aligned_cols=52 Identities=29% Similarity=0.609 Sum_probs=33.2
Q ss_pred CCCccccccCCc--cccCCCC-CeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 34 LNGQTCQICGDN--VGLTAMG-DIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 34 ~~~~~C~iCgd~--vg~~~~G-~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
..+..|.-||.. |....++ -.|..| +.||.||-=.-. +...+.||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~~--~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEKP--KPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeecC--CcccccCCcCCCcee
Confidence 445689899943 3333333 379999 789999854322 333345999997443
No 203
>PF12773 DZR: Double zinc ribbon
Probab=21.98 E-value=62 Score=26.90 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=7.5
Q ss_pred CccccccCCccc
Q 001399 36 GQTCQICGDNVG 47 (1085)
Q Consensus 36 ~~~C~iCgd~vg 47 (1085)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 446666766665
No 204
>PF04641 Rtf2: Rtf2 RING-finger
Probab=21.85 E-value=75 Score=35.73 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=39.2
Q ss_pred CCCccccccCCccccCCCCC-eeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGD-IFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~-~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
...-+|.|++... +|. -||+=--||=-+|..|.+-- + .+..||.|.++|...
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccC
Confidence 3445999998776 454 58888889988888888544 4 456799999999743
No 205
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=21.70 E-value=42 Score=30.36 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=16.8
Q ss_pred eeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001399 54 IFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 87 (1085)
Q Consensus 54 ~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 87 (1085)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 367888887776 23 499999984
No 206
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.36 E-value=40 Score=26.85 Aligned_cols=10 Identities=40% Similarity=1.550 Sum_probs=9.0
Q ss_pred CCCCCccccc
Q 001399 80 SCPQCKTRYK 89 (1085)
Q Consensus 80 ~CpqCkt~Yk 89 (1085)
.||+|+++|+
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5999999995
No 207
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=21.28 E-value=41 Score=32.91 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=24.9
Q ss_pred ccccCCcccc-CCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 39 CQICGDNVGL-TAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 39 C~iCgd~vg~-~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
|.+||...+. ...-+.|.=+ .+.+.|..|++ .||+|++.|=
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~~ 42 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEELL 42 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEEE
Confidence 8899965433 3344445445 34455544444 6999999883
No 208
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=21.24 E-value=55 Score=40.89 Aligned_cols=41 Identities=29% Similarity=0.583 Sum_probs=24.1
Q ss_pred CccccccCCccccCCCCC----------eeee--cCCCCCCcchhhhHhHhhcC
Q 001399 36 GQTCQICGDNVGLTAMGD----------IFVA--CNECAFPVCRPCYEYERKDG 77 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~----------~fva--C~eC~fpvCr~CyeyerkeG 77 (1085)
+.+|.|||.+--++.+-. -|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 589999999733222211 1222 112268999999944 3445
No 209
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.14 E-value=72 Score=41.07 Aligned_cols=57 Identities=28% Similarity=0.723 Sum_probs=42.2
Q ss_pred CCCCccccccCCccccCCC----CCeeeecCCCC--------------------CCcchhhhH-hH----hhc--CCCCC
Q 001399 33 NLNGQTCQICGDNVGLTAM----GDIFVACNECA--------------------FPVCRPCYE-YE----RKD--GTQSC 81 (1085)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~----G~~fvaC~eC~--------------------fpvCr~Cye-ye----rke--G~~~C 81 (1085)
...-.+|.-|-+++ .|.+ +=+|.-|..|| |+.|..|.. |+ |+- ---+|
T Consensus 65 ppD~a~C~~Cl~E~-~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C 143 (711)
T TIGR00143 65 PADVATCSDCLEEM-LDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIAC 143 (711)
T ss_pred CCchhhHHHHHHHh-cCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccC
Confidence 34567999999998 4443 55899999994 899999984 32 332 23589
Q ss_pred CCCcccccc
Q 001399 82 PQCKTRYKR 90 (1085)
Q Consensus 82 pqCkt~Ykr 90 (1085)
|.|+=|+.-
T Consensus 144 ~~Cgp~l~l 152 (711)
T TIGR00143 144 PRCGPQLNF 152 (711)
T ss_pred CCCCcEEEE
Confidence 999988864
No 210
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.14 E-value=49 Score=33.91 Aligned_cols=27 Identities=41% Similarity=0.850 Sum_probs=21.1
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 56 VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 56 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
-.|.+|+-|.=| |+|.-.||-|.++..
T Consensus 29 ~hCp~Cg~PLF~-------KdG~v~CPvC~~~~~ 55 (131)
T COG1645 29 KHCPKCGTPLFR-------KDGEVFCPVCGYREV 55 (131)
T ss_pred hhCcccCCccee-------eCCeEECCCCCceEE
Confidence 358888888743 899999999996543
No 211
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.06 E-value=50 Score=42.51 Aligned_cols=44 Identities=34% Similarity=0.783 Sum_probs=0.0
Q ss_pred ccccCCccccCCCCCeeeecCCC----------CCCcchhhhHhHhhcCCCCCCCCcccccccCCC
Q 001399 39 CQICGDNVGLTAMGDIFVACNEC----------AFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGS 94 (1085)
Q Consensus 39 C~iCgd~vg~~~~G~~fvaC~eC----------~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgs 94 (1085)
|+-||-- .-|..| +-..|+-|- |. +.--+.||+|+..+-+..|.
T Consensus 438 C~~Cg~v----------~~Cp~Cd~~lt~H~~~~~L~CH~Cg-~~-~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 438 CRDCGYI----------AECPNCDSPLTLHKATGQLRCHYCG-YQ-EPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred cccCCCc----------ccCCCCCcceEEecCCCeeEeCCCC-CC-CCCCCCCCCCCCCeeEEecc
No 212
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=20.98 E-value=32 Score=44.39 Aligned_cols=47 Identities=26% Similarity=0.743 Sum_probs=0.0
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCC-----cchhhhHhHhhcCCCCCCCCcccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFP-----VCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fp-----vCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
..--.|.-||..- .+.-|.+|+-+ .|+.|-...- + ..||.|++.-..
T Consensus 653 i~~r~Cp~Cg~~t-------~~~~Cp~CG~~T~~~~~Cp~C~~~~~-~--~~C~~C~~~~~~ 704 (900)
T PF03833_consen 653 IGRRRCPKCGKET-------FYNRCPECGSHTEPVYVCPDCGIEVE-E--DECPKCGRETTS 704 (900)
T ss_dssp --------------------------------------------------------------
T ss_pred eecccCcccCCcc-------hhhcCcccCCccccceeccccccccC-c--cccccccccCcc
Confidence 3445788898762 45679889876 7888874222 2 289999877543
No 213
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.93 E-value=46 Score=42.46 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=0.0
Q ss_pred cccccCCccccCCCCCeeeecCCCCCC----------cchhhhHhHhhcCCCCCCCCcccccccCC
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFP----------VCRPCYEYERKDGTQSCPQCKTRYKRHKG 93 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fp----------vCr~CyeyerkeG~~~CpqCkt~Ykr~kg 93 (1085)
.|.-||.. +-|..|.-+ .|+-|- |...-. ..||+|+...-+..|
T Consensus 383 ~C~~Cg~~----------~~C~~C~~~l~~h~~~~~l~Ch~Cg-~~~~~~-~~Cp~Cg~~~l~~~g 436 (679)
T PRK05580 383 LCRDCGWV----------AECPHCDASLTLHRFQRRLRCHHCG-YQEPIP-KACPECGSTDLVPVG 436 (679)
T ss_pred EhhhCcCc----------cCCCCCCCceeEECCCCeEECCCCc-CCCCCC-CCCCCCcCCeeEEee
No 214
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=20.76 E-value=52 Score=34.07 Aligned_cols=44 Identities=34% Similarity=0.820 Sum_probs=31.5
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcch-hhhHhHhhcCCCCCCCCccccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCR-PCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr-~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
.++|-||-..+- ---|.-|.||-|. +||.-- +.=|||+|+=+..
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~ 49 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNN 49 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCcc
Confidence 468888877542 3569999999996 898443 3378998876544
No 215
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=20.52 E-value=63 Score=36.39 Aligned_cols=59 Identities=22% Similarity=0.429 Sum_probs=44.1
Q ss_pred CccccccCCccccCCCCCeeeecCCCC-CCc--chhhhHhHhh-cCCCCCCCCcccccccCCCC
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECA-FPV--CRPCYEYERK-DGTQSCPQCKTRYKRHKGSP 95 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-fpv--Cr~Cyeyerk-eG~~~CpqCkt~Ykr~kgsp 95 (1085)
+..|.||.++........+-++| .|. .+. =|.|.+-..+ -|+-.|..|+..|......+
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~ 140 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKL 140 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceecceee
Confidence 46899999987655444678999 672 222 5899988876 57799999999999875443
No 216
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=20.04 E-value=72 Score=24.26 Aligned_cols=28 Identities=32% Similarity=0.878 Sum_probs=21.2
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhh
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPC 69 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~C 69 (1085)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998775 3443889999999887655
Done!